BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023118
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 151/233 (64%), Gaps = 4/233 (1%)
Query: 57 VSKDSNAHDVESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEIL 114
VS +++ +E+G+ S + + +LK K EV L+G+ ++LVGMMGSGKTTVG+I+
Sbjct: 9 VSDKNSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIM 68
Query: 115 SDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXXX-X 173
+ +L YTF D D +E+ M GTSVA+IF+ GE+ FRE E++AL+KLSL
Sbjct: 69 ARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGG 128
Query: 174 XXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL-DYDSADSYTKAFTALSA 232
RP+NW++M +GI+++L+VPL+ALA RIAAVGT S PLL D +S D+YT A LS
Sbjct: 129 GAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLST 188
Query: 233 LSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285
+ R EAY A A VSL N+ +G + V D+TP IA+E Q Q YL +
Sbjct: 189 IWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 241
>pdb|2PT5|A Chain A, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|B Chain B, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|C Chain C, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
pdb|2PT5|D Chain D, Crystal Structure Of Shikimate Kinase (Aq_2177) From
Aquifex Aeolicus Vf5
Length = 168
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
++L+G SGK+TVG +LS +L+ F D D+ V+K G S+ QIF++ GEAYFR+ E +
Sbjct: 3 IYLIGFXCSGKSTVGSLLSRSLNIPFYDVDEEVQK-REGLSIPQIFEKKGEAYFRKLEFE 61
Query: 157 ALQKLSLXXXXXXXXXXXXXXRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLL 215
L+ LS F + +G TVF+++P + R + PLL
Sbjct: 62 VLKDLSEKENVVISTGGGLGANEEALNFXKSRGTTVFIDIPFEVFLERCKD--SKERPLL 119
Query: 216 DYDSADSYTKAFTALSALSKERSEAYANADATV 248
+ + L +ER + Y+ AD V
Sbjct: 120 --------KRPLDEIKNLFEERRKIYSKADIKV 144
>pdb|3VAA|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
pdb|3VAA|C Chain C, 1.7 Angstrom Resolution Crystal Structure Of Shikimate
Kinase From Bacteroides Thetaiotaomicron
Length = 199
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 57/109 (52%), Gaps = 2/109 (1%)
Query: 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
+FL G MG+GKTT+G+ + L+ F D D Y+E+ T V ++F E GEA FRE E
Sbjct: 28 IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKT-VGELFTERGEAGFRELERN 86
Query: 157 ALQKLSLXXXXXXXXXXXXXXRPLNWRFM-RQGITVFLNVPLDALARRI 204
L +++ N FM R G TVFLNV D L RR+
Sbjct: 87 MLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRL 135
>pdb|1KAG|A Chain A, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
pdb|1KAG|B Chain B, Crystal Structure Of The Escherichia Coli Shikimate Kinase
I (Arok)
Length = 173
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 12/164 (7%)
Query: 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
+FLVG MG+GK+T+G L+ L+ F DSD+ +EK G V +F GE FR+ E K
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA-DVGWVFDLEGEEGFRDREEK 65
Query: 157 ALQKLSLXX-XXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTD-SFPL 214
+ +L+ R R +G+ V+L ++ +++A D PL
Sbjct: 66 VINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIE---KQLARTQRDKKRPL 122
Query: 215 LDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACI 257
L + T L AL+ ER+ Y AD T+ + +A +
Sbjct: 123 LHVE-----TPPREVLEALANERNPLYEEIADVTIRTDDQSAKV 161
>pdb|1SHK|A Chain A, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|A Chain A, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
pdb|1SHK|B Chain B, The Three-dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi
pdb|2SHK|B Chain B, The Three-Dimensional Structure Of Shikimate Kinase From
Erwinia Chrysanthemi Complexed With Adp
Length = 173
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 57/113 (50%), Gaps = 3/113 (2%)
Query: 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
+ +F+VG G GKTTVG L+ AL Y F D+D +++ G +VA + G FR E
Sbjct: 3 EPIFMVGARGCGKTTVGRELARALGYEFVDTDIFMQH-TSGMTVADVVAAEGWPGFRRRE 61
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMR-QGITVFLNVPLDALARRIAA 206
S+ALQ ++ N +FMR G V+L P + LA R+ A
Sbjct: 62 SEALQAVATPNRVVATGGGMVLLE-QNRQFMRAHGTVVYLFAPAEELALRLQA 113
>pdb|1E6C|A Chain A, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
pdb|1E6C|B Chain B, K15m Mutant Of Shikimate Kinase From Erwinia Chrysanthemi
Length = 173
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
+ +F+VG G G TTVG L+ AL Y F D+D +++ G +VA + G FR E
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH-TSGMTVADVVAAEGWPGFRRRE 61
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMR-QGITVFLNVPLDALARRIAA 206
S+ALQ ++ N +FMR G V+L P + LA R+ A
Sbjct: 62 SEALQAVATPNRVVATGGGMVLLE-QNRQFMRAHGTVVYLFAPAEELALRLQA 113
>pdb|3TRF|A Chain A, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
pdb|3TRF|B Chain B, Structure Of A Shikimate Kinase (Arok) From Coxiella
Burnetii
Length = 185
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
++L+G+MG+GKT+VG L+ DSDK +EK G +A IF+ GEA FR E +
Sbjct: 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA-DIAWIFEMEGEAGFRRRERE 66
Query: 157 ALQKL-SLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLL 215
++ L L + G+ ++L +D +RI G PL
Sbjct: 67 MIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLF 126
>pdb|1ZUH|A Chain A, Structural Basis For Shikimate-Binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|1ZUI|A Chain A, Structural Basis For Shikimate-binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|3HR7|A Chain A, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3HR7|B Chain B, Crystal Structure Of The Shikimate Kinase-Sulfate Complex
From Helicobacter Pylori
pdb|3MUF|A Chain A, Shikimate Kinase From Helicobacter Pylori In Complex With
Shikimate-3- Phosphate And Adp
Length = 168
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
Q L L+G MGSGK+++ + L AL D+D + + + G SV +IF+E GE FR +E
Sbjct: 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFE 66
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPL 214
+ +L N + + G T +L + + L +R+ + PL
Sbjct: 67 KNLIDELKTLKTPHVISTGGGIVMHENLKGL--GTTFYLKMDFETLIKRLNQKEREKRPL 124
Query: 215 LD 216
L+
Sbjct: 125 LN 126
>pdb|3N2E|A Chain A, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|B Chain B, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
pdb|3N2E|C Chain C, Crystal Structure Of Helicobactor Pylori Shikimate Kinase
In Complex With Nsc162535
Length = 168
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
Q L L+G MGSGK+++ + L AL D+D + + + G SV +IF+E GE FR +E
Sbjct: 2 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFE 60
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPL 214
+ +L N + + G T +L + + L +R+ PL
Sbjct: 61 KNLIDELKTLKTPHVISTGGGIVMHENLKGL--GTTFYLKMDFETLIKRLNQKERAKRPL 118
Query: 215 LD 216
L+
Sbjct: 119 LN 120
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 98 FLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157
LVG+ GSGK+T+G L+ AL D+D +E+ G S+A IF GE FR E
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDV 64
Query: 158 LQ 159
++
Sbjct: 65 VR 66
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 98 FLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157
LVG+ GSGK+T+G L+ AL D+D +E+ G S+A IF GE FR E
Sbjct: 6 VLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDV 64
Query: 158 LQ 159
++
Sbjct: 65 VR 66
>pdb|3MRS|A Chain A, Crystal Structure Of Shikimate Kinase Mutant (R57a) From
Helicobacter Pylori
Length = 168
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYE 154
Q L L+G MGSGK+++ + L AL D+D + + + G SV +IF+E GE F +E
Sbjct: 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFAMFE 66
Query: 155 SKALQKLSLXXXXXXXXXXXXXXRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPL 214
+ +L N + + G T +L + + L +R+ + PL
Sbjct: 67 KNLIDELKTLKTPHVISTGGGIVMHENLKGL--GTTFYLKMDFETLIKRLNQKEREKRPL 124
Query: 215 LD 216
L+
Sbjct: 125 LN 126
>pdb|1VIA|A Chain A, Crystal Structure Of Shikimate Kinase
pdb|1VIA|B Chain B, Crystal Structure Of Shikimate Kinase
Length = 175
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK 156
+ +G GSGK+T+ L+ LD F DSD +E+ V++IF++ E +FRE E K
Sbjct: 7 IVFIGFXGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQK 65
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 97 LFLVGMMGSGKTTVGEILSDALD--YTFADSDKYVEKLMGGTSVAQIFKE 144
+ L+G GSGKT + E L+ LD +T AD+ E G V I ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQK 103
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 97 LFLVGMMGSGKTTVGEILSDALD--YTFADSDKYVEKLMGGTSVAQIFKE 144
+ L+G GSGKT + E L+ LD +T AD+ E G V I ++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQK 103
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 14/67 (20%)
Query: 99 LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV----------AQIFKESGE- 147
L G +GSGKTT+ + +D L D+D +++ S AQI E GE
Sbjct: 7 LTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGEL 65
Query: 148 --AYFRE 152
A RE
Sbjct: 66 NRAALRE 72
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 74 SLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121
S+DG+ +LK V G+ L+G G+GK+T+G+IL+ +YT
Sbjct: 12 SIDGETILKGVNLVVPK---GEVHALMGPNGAGKSTLGKILAGDPEYT 56
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124
+G+CL + G GSGK+T+ +I++ ++ T D
Sbjct: 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124
+G+CL + G GSGK+T+ +I++ ++ T D
Sbjct: 34 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 65
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 80 LLKAKGREVASCLDGQ--CLFLVGMMGSGKT 108
+ K G+ V S LDG C+F G GSGKT
Sbjct: 69 VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKT 99
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 80 LLKAKGREVASCLDGQ--CLFLVGMMGSGKT 108
+ K G+ V S LDG C+F G GSGKT
Sbjct: 80 VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKT 110
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 80 LLKAKGREVASCLDGQ--CLFLVGMMGSGKT 108
+ K G+ V S LDG C+F G GSGKT
Sbjct: 69 VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKT 99
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 80 LLKAKGREVASCLDGQ--CLFLVGMMGSGKT 108
+ K G+ V S LDG C+F G GSGKT
Sbjct: 68 VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKT 98
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 80 LLKAKGREVASCLDGQ--CLFLVGMMGSGKT 108
+ K G+ V S LDG C+F G GSGKT
Sbjct: 69 VFKEVGQLVQSSLDGYNVCIFAYGQTGSGKT 99
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 80 LLKAKGREVASCLDGQ--CLFLVGMMGSGKT 108
+ K G+ + S LDG C+F G GSGKT
Sbjct: 91 IFKEVGQLIQSSLDGYNVCIFAYGQTGSGKT 121
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 91 CLD-GQCLFLVGMMGSGKTTVGEILSDAL 118
C++ G ++L G+ GSGKTT+ L+D L
Sbjct: 9 CIEKGIVVWLTGLPGSGKTTIATRLADLL 37
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 97 LFLVGMMGSGKTTVGEILSDALDYTFADSD 126
+ L+G GSGKT + + L+ LD A SD
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128
+ ++G+ GSGKTT+ ++D FA++D +
Sbjct: 32 VVVMGVSGSGKTTIAHGVADETGLEFAEADAF 63
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 88 VASCLDG--QCLFLVGMMGSGKT 108
V SC+DG C+F G G+GKT
Sbjct: 73 VTSCIDGFNVCIFAYGQTGAGKT 95
>pdb|4F0P|A Chain A, Mspji Restriction Endonuclease - P31 Form
pdb|4F0P|B Chain B, Mspji Restriction Endonuclease - P31 Form
pdb|4F0P|C Chain C, Mspji Restriction Endonuclease - P31 Form
pdb|4F0P|D Chain D, Mspji Restriction Endonuclease - P31 Form
pdb|4F0Q|A Chain A, Mspji Restriction Endonuclease - P21 Form
pdb|4F0Q|B Chain B, Mspji Restriction Endonuclease - P21 Form
pdb|4F0Q|C Chain C, Mspji Restriction Endonuclease - P21 Form
pdb|4F0Q|D Chain D, Mspji Restriction Endonuclease - P21 Form
Length = 456
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 120 YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157
Y F D K+ +L+ A++F+ESG Y + S++
Sbjct: 290 YKFYDGRKHAFELLASRVAAEVFRESGARYKEGWLSRS 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,575,662
Number of Sequences: 62578
Number of extensions: 288693
Number of successful extensions: 823
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 790
Number of HSP's gapped (non-prelim): 31
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)