Query 023118
Match_columns 287
No_of_seqs 345 out of 2859
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02199 shikimate kinase 100.0 1.1E-56 2.3E-61 412.5 18.3 279 5-286 4-294 (303)
2 COG0703 AroK Shikimate kinase 100.0 7.6E-37 1.6E-41 261.3 17.9 167 94-282 2-170 (172)
3 PRK13948 shikimate kinase; Pro 100.0 1E-32 2.2E-37 239.7 19.3 168 94-283 10-178 (182)
4 PRK13949 shikimate kinase; Pro 100.0 1.1E-31 2.4E-36 230.4 17.9 166 95-277 2-168 (169)
5 PRK05057 aroK shikimate kinase 100.0 7.5E-30 1.6E-34 219.5 18.0 166 94-280 4-171 (172)
6 PRK14021 bifunctional shikimat 100.0 6E-30 1.3E-34 255.3 18.0 165 94-280 6-176 (542)
7 PF01202 SKI: Shikimate kinase 100.0 4.6E-30 1E-34 217.5 11.5 156 103-279 1-158 (158)
8 PRK13946 shikimate kinase; Pro 100.0 1.4E-28 3E-33 213.3 18.9 174 92-286 8-182 (184)
9 PRK00625 shikimate kinase; Pro 100.0 2E-28 4.4E-33 211.1 18.1 164 96-278 2-171 (173)
10 PRK13947 shikimate kinase; Pro 100.0 3.7E-27 8.1E-32 200.5 17.8 163 96-279 3-167 (171)
11 PRK00131 aroK shikimate kinase 99.9 7.7E-25 1.7E-29 185.4 19.2 169 93-282 3-173 (175)
12 PRK08154 anaerobic benzoate ca 99.9 5.1E-25 1.1E-29 205.9 19.0 175 86-283 128-304 (309)
13 PRK03731 aroL shikimate kinase 99.9 1.4E-24 3E-29 185.1 17.5 165 95-280 3-170 (171)
14 PRK13951 bifunctional shikimat 99.9 2E-24 4.4E-29 212.9 16.7 157 96-277 2-158 (488)
15 cd00464 SK Shikimate kinase (S 99.9 1.9E-23 4.1E-28 174.0 14.1 151 96-268 1-153 (154)
16 COG1102 Cmk Cytidylate kinase 99.8 1.4E-19 3.1E-24 152.6 14.2 171 96-285 2-177 (179)
17 PRK13477 bifunctional pantoate 99.8 4.1E-18 8.9E-23 168.4 17.7 182 71-283 265-506 (512)
18 PRK09169 hypothetical protein; 99.8 3.4E-18 7.4E-23 185.8 14.4 151 92-248 2108-2261(2316)
19 COG0283 Cmk Cytidylate kinase 99.8 1E-17 2.2E-22 147.6 14.6 169 95-282 5-221 (222)
20 PRK10078 ribose 1,5-bisphospho 99.7 4.1E-18 9E-23 147.7 8.9 161 94-284 2-180 (186)
21 PRK04182 cytidylate kinase; Pr 99.7 1E-16 2.2E-21 136.5 13.2 160 96-286 2-179 (180)
22 COG3265 GntK Gluconate kinase 99.7 1.9E-16 4.2E-21 131.8 11.4 150 100-280 1-159 (161)
23 KOG3354 Gluconate kinase [Carb 99.7 2.2E-16 4.8E-21 132.5 10.4 157 95-280 13-188 (191)
24 PRK03839 putative kinase; Prov 99.7 9.1E-16 2E-20 131.9 12.9 153 96-282 2-155 (180)
25 PRK05537 bifunctional sulfate 99.6 2.8E-16 6.2E-21 157.8 8.2 151 93-280 391-562 (568)
26 PRK05541 adenylylsulfate kinas 99.6 5.7E-16 1.2E-20 132.7 5.5 154 94-282 7-174 (176)
27 PRK13975 thymidylate kinase; P 99.6 3.5E-15 7.7E-20 129.4 10.6 164 94-283 2-193 (196)
28 PRK14532 adenylate kinase; Pro 99.6 3.1E-14 6.7E-19 123.1 15.8 162 96-279 2-186 (188)
29 TIGR01313 therm_gnt_kin carboh 99.6 2.7E-14 5.9E-19 120.6 13.5 152 97-279 1-162 (163)
30 COG1120 FepC ABC-type cobalami 99.6 2E-15 4.3E-20 137.4 6.7 93 65-177 2-94 (258)
31 TIGR02173 cyt_kin_arch cytidyl 99.6 1.6E-13 3.5E-18 115.9 16.7 162 96-278 2-170 (171)
32 PRK11860 bifunctional 3-phosph 99.6 3.3E-14 7.2E-19 145.4 14.1 166 94-281 442-656 (661)
33 PRK03846 adenylylsulfate kinas 99.5 1.7E-14 3.7E-19 126.3 8.2 157 94-280 24-192 (198)
34 PRK14530 adenylate kinase; Pro 99.5 4.2E-13 9.2E-18 118.9 16.9 112 93-208 2-127 (215)
35 TIGR02322 phosphon_PhnN phosph 99.5 1.6E-13 3.6E-18 117.6 13.0 156 94-279 1-177 (179)
36 TIGR00017 cmk cytidylate kinas 99.5 7.6E-13 1.6E-17 118.1 16.3 163 95-277 3-216 (217)
37 PRK00889 adenylylsulfate kinas 99.5 3.3E-14 7.2E-19 121.7 7.1 156 94-280 4-170 (175)
38 PRK09518 bifunctional cytidyla 99.5 3.5E-13 7.5E-18 139.1 15.3 166 95-284 2-235 (712)
39 COG1125 OpuBA ABC-type proline 99.5 2E-14 4.4E-19 129.7 4.4 89 65-166 1-89 (309)
40 COG3842 PotA ABC-type spermidi 99.5 3.1E-14 6.7E-19 134.8 5.2 68 64-140 4-71 (352)
41 COG3839 MalK ABC-type sugar tr 99.5 3.5E-14 7.7E-19 133.8 5.0 68 64-140 2-69 (338)
42 COG1116 TauB ABC-type nitrate/ 99.5 5.2E-14 1.1E-18 126.7 5.7 66 64-138 2-67 (248)
43 COG1126 GlnQ ABC-type polar am 99.5 5.4E-14 1.2E-18 124.2 5.4 65 65-138 2-66 (240)
44 PRK09825 idnK D-gluconate kina 99.5 2.8E-12 6.1E-17 110.8 15.9 159 93-283 2-171 (176)
45 PRK00023 cmk cytidylate kinase 99.4 3.6E-12 7.8E-17 114.2 15.8 171 94-282 4-223 (225)
46 TIGR01360 aden_kin_iso1 adenyl 99.4 5.5E-12 1.2E-16 108.1 15.8 165 94-280 3-187 (188)
47 PRK12269 bifunctional cytidyla 99.4 2.4E-12 5.3E-17 134.3 15.3 166 93-281 33-286 (863)
48 COG1136 SalX ABC-type antimicr 99.4 1.7E-13 3.6E-18 122.6 5.1 77 65-151 1-81 (226)
49 COG1127 Ttg2A ABC-type transpo 99.4 4.4E-13 9.4E-18 120.1 6.0 70 63-141 6-75 (263)
50 PRK06762 hypothetical protein; 99.4 5.8E-12 1.3E-16 106.6 12.5 152 94-279 2-163 (166)
51 PRK13536 nodulation factor exp 99.4 4.8E-13 1E-17 126.9 6.1 59 64-128 40-98 (340)
52 COG3638 ABC-type phosphate/pho 99.4 5.3E-13 1.2E-17 119.3 5.6 68 64-140 2-70 (258)
53 COG1124 DppF ABC-type dipeptid 99.4 4.3E-13 9.2E-18 120.3 5.0 66 64-138 2-71 (252)
54 COG4619 ABC-type uncharacteriz 99.4 2.3E-13 5E-18 116.3 3.0 78 65-155 3-80 (223)
55 COG2884 FtsE Predicted ATPase 99.4 2.5E-13 5.4E-18 117.9 3.0 68 65-141 1-69 (223)
56 PRK01184 hypothetical protein; 99.4 1.1E-11 2.5E-16 106.7 12.8 162 96-284 3-182 (184)
57 PRK06217 hypothetical protein; 99.4 1.4E-11 2.9E-16 106.6 13.1 103 95-208 2-105 (183)
58 TIGR02673 FtsE cell division A 99.3 7.1E-13 1.5E-17 116.8 4.8 65 65-138 1-66 (214)
59 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 9.3E-13 2E-17 119.6 5.7 59 64-128 3-61 (254)
60 cd03261 ABC_Org_Solvent_Resist 99.3 6.5E-13 1.4E-17 118.8 4.6 58 66-129 1-58 (235)
61 PRK11831 putative ABC transpor 99.3 8.3E-13 1.8E-17 120.9 5.4 61 62-128 4-64 (269)
62 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 7.6E-13 1.7E-17 116.9 4.8 64 66-138 1-68 (218)
63 PRK13540 cytochrome c biogenes 99.3 1.1E-12 2.3E-17 114.8 5.7 65 65-138 1-65 (200)
64 TIGR00960 3a0501s02 Type II (G 99.3 1E-12 2.2E-17 116.0 5.3 66 65-139 1-68 (216)
65 cd03259 ABC_Carb_Solutes_like 99.3 8.3E-13 1.8E-17 116.3 4.6 64 66-138 1-64 (213)
66 COG0411 LivG ABC-type branched 99.3 2.5E-13 5.5E-18 121.7 1.3 68 64-140 3-70 (250)
67 cd03265 ABC_DrrA DrrA is the A 99.3 9.4E-13 2E-17 116.7 4.9 58 66-129 1-58 (220)
68 PRK11248 tauB taurine transpor 99.3 1.1E-12 2.3E-17 119.4 5.2 58 65-128 1-58 (255)
69 cd03269 ABC_putative_ATPase Th 99.3 1.2E-12 2.6E-17 115.1 5.3 64 66-138 1-64 (210)
70 TIGR02315 ABC_phnC phosphonate 99.3 1E-12 2.2E-17 117.9 4.9 65 65-138 1-66 (243)
71 PRK10895 lipopolysaccharide AB 99.3 1.2E-12 2.6E-17 117.6 5.4 60 64-129 2-61 (241)
72 PRK05416 glmZ(sRNA)-inactivati 99.3 2.2E-11 4.9E-16 113.0 14.0 147 94-280 6-160 (288)
73 PRK14250 phosphate ABC transpo 99.3 1.3E-12 2.8E-17 117.6 5.5 60 64-129 2-61 (241)
74 PRK13538 cytochrome c biogenes 99.3 1.3E-12 2.9E-17 114.6 5.4 65 65-138 1-65 (204)
75 PLN02674 adenylate kinase 99.3 8.5E-11 1.8E-15 106.7 17.2 168 94-278 31-243 (244)
76 cd03257 ABC_NikE_OppD_transpor 99.3 1.1E-12 2.4E-17 116.4 4.8 65 65-138 1-69 (228)
77 PRK13537 nodulation ABC transp 99.3 1.4E-12 3E-17 121.9 5.7 59 64-128 6-64 (306)
78 PRK11264 putative amino-acid A 99.3 1.4E-12 3E-17 117.7 5.5 58 65-128 3-60 (250)
79 cd03296 ABC_CysA_sulfate_impor 99.3 1.3E-12 2.7E-17 117.3 5.2 59 65-129 2-60 (239)
80 cd03262 ABC_HisP_GlnQ_permease 99.3 1.2E-12 2.7E-17 115.0 4.9 64 66-138 1-64 (213)
81 PRK11432 fbpC ferric transport 99.3 1.3E-12 2.9E-17 124.3 5.5 60 63-128 4-63 (351)
82 TIGR03864 PQQ_ABC_ATP ABC tran 99.3 1.3E-12 2.9E-17 117.0 5.1 58 65-128 1-58 (236)
83 cd03218 ABC_YhbG The ABC trans 99.3 1.3E-12 2.7E-17 116.5 4.9 57 66-128 1-57 (232)
84 TIGR01288 nodI ATP-binding ABC 99.3 1.4E-12 3.1E-17 121.5 5.4 59 64-128 3-61 (303)
85 cd03224 ABC_TM1139_LivF_branch 99.3 1.1E-12 2.5E-17 115.9 4.5 58 66-129 1-58 (222)
86 cd03258 ABC_MetN_methionine_tr 99.3 1.3E-12 2.8E-17 116.6 4.9 65 65-138 1-69 (233)
87 PRK09493 glnQ glutamine ABC tr 99.3 1.4E-12 3E-17 117.1 5.1 59 65-129 1-59 (240)
88 cd03260 ABC_PstB_phosphate_tra 99.3 1.2E-12 2.6E-17 116.4 4.6 65 66-139 1-70 (227)
89 PRK10247 putative ABC transpor 99.3 1.3E-12 2.8E-17 116.4 4.7 65 65-138 7-71 (225)
90 PRK10575 iron-hydroxamate tran 99.3 2E-12 4.3E-17 118.0 6.0 59 64-128 10-68 (265)
91 cd03301 ABC_MalK_N The N-termi 99.3 1.4E-12 3E-17 114.8 4.7 64 66-138 1-64 (213)
92 TIGR01359 UMP_CMP_kin_fam UMP- 99.3 1.4E-10 3E-15 99.5 17.0 159 96-278 1-182 (183)
93 cd03216 ABC_Carb_Monos_I This 99.3 1.5E-12 3.2E-17 110.8 4.7 64 66-138 1-64 (163)
94 cd03263 ABC_subfamily_A The AB 99.3 1.3E-12 2.9E-17 115.5 4.6 64 66-138 1-66 (220)
95 PRK13638 cbiO cobalt transport 99.3 1.3E-12 2.9E-17 119.6 4.7 58 65-128 1-58 (271)
96 cd03219 ABC_Mj1267_LivG_branch 99.3 1.3E-12 2.9E-17 116.7 4.6 64 66-138 1-64 (236)
97 PRK10908 cell division protein 99.3 1.5E-12 3.3E-17 115.5 4.9 65 65-138 1-66 (222)
98 PRK11247 ssuB aliphatic sulfon 99.3 1.7E-12 3.6E-17 118.5 5.3 59 64-128 11-69 (257)
99 cd03256 ABC_PhnC_transporter A 99.3 1.5E-12 3.3E-17 116.6 4.8 58 66-129 1-59 (241)
100 cd03266 ABC_NatA_sodium_export 99.3 1.7E-12 3.6E-17 114.7 4.9 65 65-138 1-69 (218)
101 cd03235 ABC_Metallic_Cations A 99.3 1.5E-12 3.3E-17 114.7 4.4 63 67-138 1-63 (213)
102 PRK13543 cytochrome c biogenes 99.3 2.4E-12 5.2E-17 113.9 5.7 66 64-138 10-75 (214)
103 cd03268 ABC_BcrA_bacitracin_re 99.3 2E-12 4.4E-17 113.5 5.1 64 66-138 1-64 (208)
104 PRK13539 cytochrome c biogenes 99.3 2.3E-12 5E-17 113.4 5.4 59 65-129 2-60 (207)
105 PRK11614 livF leucine/isoleuci 99.3 1.7E-12 3.8E-17 116.2 4.7 60 64-129 4-63 (237)
106 TIGR03410 urea_trans_UrtE urea 99.3 1.8E-12 3.9E-17 115.5 4.8 58 66-129 1-58 (230)
107 COG4604 CeuD ABC-type enteroch 99.3 1.5E-12 3.2E-17 113.9 4.1 68 65-141 1-68 (252)
108 PRK11231 fecE iron-dicitrate t 99.3 2.3E-12 5E-17 116.8 5.5 58 65-128 2-59 (255)
109 cd03229 ABC_Class3 This class 99.3 1.9E-12 4.1E-17 111.4 4.7 64 66-138 1-64 (178)
110 TIGR03411 urea_trans_UrtD urea 99.3 2.4E-12 5.2E-17 115.6 5.5 59 65-129 2-60 (242)
111 PRK11300 livG leucine/isoleuci 99.3 2.3E-12 5E-17 116.5 5.4 60 64-129 4-63 (255)
112 PRK11629 lolD lipoprotein tran 99.3 2E-12 4.3E-17 115.7 4.8 67 64-139 4-74 (233)
113 TIGR01189 ccmA heme ABC export 99.3 2.1E-12 4.6E-17 112.7 4.9 64 66-138 1-64 (198)
114 PRK10584 putative ABC transpor 99.3 2.6E-12 5.7E-17 114.3 5.6 66 64-138 5-74 (228)
115 TIGR02211 LolD_lipo_ex lipopro 99.3 2.4E-12 5.2E-17 113.9 5.3 66 65-139 1-70 (221)
116 TIGR03265 PhnT2 putative 2-ami 99.3 2.1E-12 4.5E-17 123.1 5.2 60 64-129 3-62 (353)
117 PRK11124 artP arginine transpo 99.3 2.3E-12 5.1E-17 115.7 5.2 59 65-129 2-60 (242)
118 cd03293 ABC_NrtD_SsuB_transpor 99.3 2E-12 4.4E-17 114.5 4.7 58 66-129 1-62 (220)
119 PRK14242 phosphate transporter 99.3 2.7E-12 5.8E-17 116.1 5.5 53 64-119 5-57 (253)
120 TIGR00972 3a0107s01c2 phosphat 99.3 2.4E-12 5.1E-17 116.1 5.1 53 65-120 1-53 (247)
121 PRK11650 ugpC glycerol-3-phosp 99.3 2E-12 4.4E-17 123.3 4.9 59 65-129 3-62 (356)
122 cd03264 ABC_drug_resistance_li 99.3 2.4E-12 5.2E-17 113.2 4.9 63 66-138 1-63 (211)
123 PRK13548 hmuV hemin importer A 99.3 2.4E-12 5.2E-17 117.1 5.1 59 65-129 2-60 (258)
124 cd03226 ABC_cobalt_CbiO_domain 99.3 1.8E-12 4E-17 113.6 4.1 63 67-138 1-64 (205)
125 PRK11545 gntK gluconate kinase 99.3 3.8E-11 8.2E-16 102.4 12.0 149 100-280 1-160 (163)
126 cd03225 ABC_cobalt_CbiO_domain 99.3 1.9E-12 4.1E-17 113.8 4.1 63 67-138 1-65 (211)
127 COG0410 LivF ABC-type branched 99.3 2.8E-12 6E-17 114.3 5.0 69 64-141 2-70 (237)
128 TIGR01978 sufC FeS assembly AT 99.3 2.5E-12 5.5E-17 115.2 4.8 58 66-129 1-60 (243)
129 PRK11701 phnK phosphonate C-P 99.3 3.3E-12 7.3E-17 116.0 5.6 60 64-129 5-64 (258)
130 PRK14267 phosphate ABC transpo 99.3 3E-12 6.5E-17 115.7 5.2 54 64-120 3-56 (253)
131 PRK13547 hmuV hemin importer A 99.3 2.8E-12 6.1E-17 117.9 5.1 53 65-120 1-53 (272)
132 PRK14259 phosphate ABC transpo 99.3 3.9E-12 8.4E-17 116.6 5.9 55 63-120 11-65 (269)
133 PRK14274 phosphate ABC transpo 99.3 3.3E-12 7.2E-17 116.1 5.4 53 64-119 11-63 (259)
134 PRK14247 phosphate ABC transpo 99.3 3.4E-12 7.3E-17 115.2 5.3 54 64-120 2-55 (250)
135 COG4559 ABC-type hemin transpo 99.3 5.5E-12 1.2E-16 111.4 6.4 68 65-141 1-68 (259)
136 TIGR02769 nickel_nikE nickel i 99.3 3.2E-12 7E-17 116.7 5.2 59 65-129 2-69 (265)
137 PRK14235 phosphate transporter 99.3 3.8E-12 8.2E-17 116.4 5.6 54 64-120 18-71 (267)
138 PRK10253 iron-enterobactin tra 99.3 3.9E-12 8.6E-17 116.1 5.7 59 64-128 6-64 (265)
139 TIGR02323 CP_lyasePhnK phospho 99.3 3.6E-12 7.8E-17 115.2 5.3 60 64-129 2-61 (253)
140 PRK14248 phosphate ABC transpo 99.3 3.8E-12 8.2E-17 116.3 5.5 54 63-119 19-72 (268)
141 PRK09536 btuD corrinoid ABC tr 99.3 3E-12 6.5E-17 123.9 5.1 59 64-128 2-60 (402)
142 PRK14261 phosphate ABC transpo 99.3 3.9E-12 8.5E-17 115.1 5.5 53 64-119 5-57 (253)
143 cd03292 ABC_FtsE_transporter F 99.3 2.8E-12 6.2E-17 112.8 4.5 64 66-138 1-65 (214)
144 KOG0058 Peptide exporter, ABC 99.3 5.6E-12 1.2E-16 127.1 7.1 87 45-141 446-535 (716)
145 TIGR03575 selen_PSTK_euk L-ser 99.3 4.3E-12 9.3E-17 120.1 5.8 107 97-216 2-130 (340)
146 cd03230 ABC_DR_subfamily_A Thi 99.3 3.4E-12 7.4E-17 109.3 4.7 64 66-138 1-64 (173)
147 TIGR03522 GldA_ABC_ATP gliding 99.3 3.4E-12 7.4E-17 118.8 5.1 58 65-128 2-59 (301)
148 PRK11153 metN DL-methionine tr 99.3 3.1E-12 6.7E-17 121.4 4.9 58 65-128 1-62 (343)
149 PRK09452 potA putrescine/sperm 99.3 3.7E-12 8.1E-17 122.3 5.5 60 63-128 12-71 (375)
150 PRK06547 hypothetical protein; 99.3 4.7E-12 1E-16 109.2 5.5 144 94-248 15-170 (172)
151 PRK11000 maltose/maltodextrin 99.3 3.7E-12 7.9E-17 122.1 5.3 58 65-128 3-60 (369)
152 cd03231 ABC_CcmA_heme_exporter 99.3 3.7E-12 8E-17 111.6 4.9 64 66-138 1-64 (201)
153 TIGR03608 L_ocin_972_ABC putat 99.3 3.2E-12 6.9E-17 111.8 4.5 62 68-138 1-62 (206)
154 TIGR03005 ectoine_ehuA ectoine 99.3 3.3E-12 7E-17 115.6 4.6 58 66-129 1-58 (252)
155 PRK13632 cbiO cobalt transport 99.3 3.9E-12 8.6E-17 116.5 5.2 61 62-128 4-66 (271)
156 PRK14265 phosphate ABC transpo 99.3 5.1E-12 1.1E-16 116.1 5.9 57 61-120 16-72 (274)
157 PRK10744 pstB phosphate transp 99.3 4.5E-12 9.7E-17 115.3 5.4 54 63-119 11-64 (260)
158 cd03295 ABC_OpuCA_Osmoprotecti 99.3 3.6E-12 7.9E-17 114.6 4.7 58 66-129 1-59 (242)
159 cd02020 CMPK Cytidine monophos 99.3 4.6E-11 1E-15 98.1 10.8 102 96-207 1-103 (147)
160 PRK10619 histidine/lysine/argi 99.3 5.3E-12 1.2E-16 114.6 5.6 59 65-129 5-63 (257)
161 COG4987 CydC ABC-type transpor 99.3 8.7E-12 1.9E-16 122.2 7.2 86 47-141 316-405 (573)
162 PRK14255 phosphate ABC transpo 99.3 5.9E-12 1.3E-16 113.8 5.7 53 64-119 4-56 (252)
163 cd03228 ABCC_MRP_Like The MRP 99.3 4.3E-12 9.4E-17 108.5 4.5 65 66-139 1-67 (171)
164 PRK14237 phosphate transporter 99.3 5.2E-12 1.1E-16 115.5 5.3 54 64-120 19-72 (267)
165 PRK15112 antimicrobial peptide 99.3 4.4E-12 9.6E-17 116.0 4.8 59 64-128 3-70 (267)
166 PRK09580 sufC cysteine desulfu 99.3 4.7E-12 1E-16 113.9 4.9 65 65-138 1-67 (248)
167 PRK10851 sulfate/thiosulfate t 99.3 4.9E-12 1.1E-16 120.6 5.3 59 65-129 2-60 (353)
168 COG1131 CcmA ABC-type multidru 99.3 4.7E-12 1E-16 117.8 5.1 58 65-128 4-62 (293)
169 PRK10419 nikE nickel transport 99.3 5.3E-12 1.1E-16 115.6 5.2 59 64-128 2-69 (268)
170 PRK14240 phosphate transporter 99.3 5.5E-12 1.2E-16 113.9 5.2 62 65-129 3-66 (250)
171 PRK14269 phosphate ABC transpo 99.3 5.5E-12 1.2E-16 113.8 5.2 68 65-138 2-69 (246)
172 TIGR02314 ABC_MetN D-methionin 99.3 4.7E-12 1E-16 120.2 5.0 58 65-128 1-62 (343)
173 cd03214 ABC_Iron-Siderophores_ 99.3 4.5E-12 9.8E-17 109.2 4.4 64 67-139 1-64 (180)
174 PRK14241 phosphate transporter 99.3 5.7E-12 1.2E-16 114.4 5.3 53 65-120 4-56 (258)
175 PRK14271 phosphate ABC transpo 99.2 9E-12 2E-16 114.7 6.6 55 63-120 19-73 (276)
176 PRK09544 znuC high-affinity zi 99.2 7.2E-12 1.6E-16 113.9 5.8 59 64-128 3-61 (251)
177 PRK14260 phosphate ABC transpo 99.2 6.3E-12 1.4E-16 114.3 5.4 54 64-120 6-59 (259)
178 PRK15056 manganese/iron transp 99.2 5.5E-12 1.2E-16 115.6 5.0 59 65-129 6-65 (272)
179 PRK14262 phosphate ABC transpo 99.2 6.1E-12 1.3E-16 113.6 5.1 53 65-120 3-55 (250)
180 PRK14243 phosphate transporter 99.2 6.5E-12 1.4E-16 114.7 5.3 63 64-129 9-73 (264)
181 PRK14268 phosphate ABC transpo 99.2 6.6E-12 1.4E-16 114.1 5.3 55 63-120 10-64 (258)
182 TIGR03873 F420-0_ABC_ATP propo 99.2 5.7E-12 1.2E-16 114.3 4.9 57 66-128 2-58 (256)
183 cd03247 ABCC_cytochrome_bd The 99.2 5.8E-12 1.3E-16 108.3 4.6 64 66-138 1-66 (178)
184 PRK09984 phosphonate/organopho 99.2 6.9E-12 1.5E-16 114.1 5.4 55 64-121 3-57 (262)
185 PRK13541 cytochrome c biogenes 99.2 7.3E-12 1.6E-16 109.2 5.3 64 65-138 1-64 (195)
186 cd03254 ABCC_Glucan_exporter_l 99.2 6.4E-12 1.4E-16 111.7 5.0 65 66-139 3-68 (229)
187 COG0396 sufC Cysteine desulfur 99.2 6.5E-12 1.4E-16 112.0 4.9 71 64-141 2-73 (251)
188 PRK14251 phosphate ABC transpo 99.2 7E-12 1.5E-16 113.2 5.2 52 65-119 4-55 (251)
189 TIGR00455 apsK adenylylsulfate 99.2 1.9E-11 4E-16 105.6 7.6 154 94-278 18-184 (184)
190 PRK14256 phosphate ABC transpo 99.2 7.5E-12 1.6E-16 113.2 5.3 52 65-119 4-55 (252)
191 PRK14239 phosphate transporter 99.2 8.4E-12 1.8E-16 112.7 5.5 53 64-119 4-56 (252)
192 PRK13644 cbiO cobalt transport 99.2 6.5E-12 1.4E-16 115.4 4.8 58 65-128 1-59 (274)
193 TIGR03740 galliderm_ABC gallid 99.2 7.1E-12 1.5E-16 111.3 4.9 57 66-128 1-57 (223)
194 PRK14238 phosphate transporter 99.2 8.4E-12 1.8E-16 114.5 5.4 53 64-119 23-75 (271)
195 cd03248 ABCC_TAP TAP, the Tran 99.2 1.2E-11 2.5E-16 110.0 6.1 68 63-139 9-79 (226)
196 PRK13647 cbiO cobalt transport 99.2 7E-12 1.5E-16 115.2 4.6 58 65-128 4-62 (274)
197 CHL00131 ycf16 sulfate ABC tra 99.2 8E-12 1.7E-16 112.8 4.9 59 65-129 7-67 (252)
198 PRK14266 phosphate ABC transpo 99.2 9E-12 2E-16 112.4 5.3 62 65-129 3-66 (250)
199 TIGR02324 CP_lyasePhnL phospho 99.2 1.2E-11 2.6E-16 109.8 5.9 59 65-129 1-66 (224)
200 cd03246 ABCC_Protease_Secretio 99.2 7E-12 1.5E-16 107.4 4.3 65 66-139 1-67 (173)
201 TIGR02982 heterocyst_DevA ABC 99.2 9.6E-12 2.1E-16 110.3 5.3 66 65-139 1-70 (220)
202 PRK15093 antimicrobial peptide 99.2 8.5E-12 1.8E-16 117.8 5.2 63 64-129 2-69 (330)
203 PRK14273 phosphate ABC transpo 99.2 1.5E-11 3.3E-16 111.3 6.6 54 64-120 6-59 (254)
204 PRK14245 phosphate ABC transpo 99.2 9.2E-12 2E-16 112.5 5.2 53 64-119 2-54 (250)
205 cd03233 ABC_PDR_domain1 The pl 99.2 7.1E-12 1.5E-16 110.1 4.3 69 64-138 2-74 (202)
206 cd03217 ABC_FeS_Assembly ABC-t 99.2 8.3E-12 1.8E-16 109.4 4.7 65 66-139 1-67 (200)
207 PRK13652 cbiO cobalt transport 99.2 8.2E-12 1.8E-16 114.8 4.8 59 64-128 2-61 (277)
208 PRK08356 hypothetical protein; 99.2 4.4E-10 9.5E-15 98.2 15.5 159 94-281 5-193 (195)
209 PRK13549 xylose transporter AT 99.2 9.1E-12 2E-16 123.6 5.5 54 64-120 4-57 (506)
210 PRK11607 potG putrescine trans 99.2 1.3E-11 2.8E-16 118.7 6.3 59 64-128 18-76 (377)
211 cd03245 ABCC_bacteriocin_expor 99.2 9.8E-12 2.1E-16 109.9 5.0 64 66-138 3-68 (220)
212 PRK13648 cbiO cobalt transport 99.2 8.2E-12 1.8E-16 114.3 4.6 60 64-129 6-67 (269)
213 PRK13639 cbiO cobalt transport 99.2 8.9E-12 1.9E-16 114.5 4.9 58 65-128 1-59 (275)
214 PRK15439 autoinducer 2 ABC tra 99.2 1E-11 2.2E-16 123.5 5.7 59 64-128 10-68 (510)
215 cd03251 ABCC_MsbA MsbA is an e 99.2 8.2E-12 1.8E-16 111.4 4.5 64 66-138 1-66 (234)
216 TIGR02868 CydC thiol reductant 99.2 9.4E-12 2E-16 123.9 5.3 68 65-141 334-402 (529)
217 PRK09700 D-allose transporter 99.2 9.2E-12 2E-16 123.6 5.2 59 64-128 4-62 (510)
218 PRK10636 putative ABC transpor 99.2 1.1E-11 2.4E-16 126.5 5.9 58 65-128 1-58 (638)
219 PRK14270 phosphate ABC transpo 99.2 1.2E-11 2.6E-16 111.8 5.5 54 64-120 3-56 (251)
220 PRK14236 phosphate transporter 99.2 1.4E-11 2.9E-16 113.1 5.8 55 63-120 23-77 (272)
221 PRK13637 cbiO cobalt transport 99.2 8.9E-12 1.9E-16 115.3 4.7 58 65-128 2-64 (287)
222 PRK14254 phosphate ABC transpo 99.2 1.2E-11 2.7E-16 114.3 5.6 54 64-120 38-91 (285)
223 cd03213 ABCG_EPDR ABCG transpo 99.2 9.5E-12 2.1E-16 108.6 4.5 65 65-138 3-75 (194)
224 PRK13636 cbiO cobalt transport 99.2 1E-11 2.2E-16 114.6 5.0 58 65-128 5-63 (283)
225 PRK10762 D-ribose transporter 99.2 9.9E-12 2.2E-16 123.2 5.2 59 64-128 3-61 (501)
226 PRK13641 cbiO cobalt transport 99.2 9.9E-12 2.1E-16 115.0 4.7 58 65-128 2-64 (287)
227 PRK09473 oppD oligopeptide tra 99.2 1.2E-11 2.7E-16 116.8 5.5 70 63-138 10-83 (330)
228 cd03215 ABC_Carb_Monos_II This 99.2 1.1E-11 2.3E-16 107.1 4.6 63 64-139 3-65 (182)
229 PRK13649 cbiO cobalt transport 99.2 1E-11 2.2E-16 114.2 4.7 57 66-128 3-64 (280)
230 PRK13635 cbiO cobalt transport 99.2 9.9E-12 2.1E-16 114.6 4.7 59 64-128 4-64 (279)
231 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 1.5E-11 3.2E-16 102.7 5.2 58 66-129 1-58 (144)
232 PRK11022 dppD dipeptide transp 99.2 1.1E-11 2.3E-16 116.9 4.9 53 65-120 3-59 (326)
233 PRK11308 dppF dipeptide transp 99.2 1.2E-11 2.6E-16 116.7 5.3 60 64-129 4-73 (327)
234 cd03232 ABC_PDR_domain2 The pl 99.2 1.4E-11 3.1E-16 107.2 5.3 61 64-129 2-67 (192)
235 PRK13643 cbiO cobalt transport 99.2 1E-11 2.2E-16 115.0 4.6 58 65-128 1-63 (288)
236 cd03300 ABC_PotA_N PotA is an 99.2 1.1E-11 2.5E-16 110.8 4.7 57 66-128 1-57 (232)
237 TIGR03258 PhnT 2-aminoethylpho 99.2 1.2E-11 2.5E-16 118.4 5.1 52 66-120 6-57 (362)
238 COG1119 ModF ABC-type molybden 99.2 2.4E-11 5.2E-16 109.3 6.7 55 64-121 30-84 (257)
239 PRK10938 putative molybdenum t 99.2 1.7E-11 3.6E-16 121.2 6.3 58 65-128 3-60 (490)
240 PRK14253 phosphate ABC transpo 99.2 2.2E-11 4.8E-16 109.8 6.6 54 64-120 2-55 (249)
241 COG4608 AppF ABC-type oligopep 99.2 2.5E-11 5.4E-16 110.7 6.8 69 64-141 3-80 (268)
242 cd03252 ABCC_Hemolysin The ABC 99.2 1.2E-11 2.6E-16 110.7 4.7 64 66-138 1-66 (237)
243 PRK13645 cbiO cobalt transport 99.2 1.2E-11 2.5E-16 114.5 4.7 58 65-128 6-68 (289)
244 cd03223 ABCD_peroxisomal_ALDP 99.2 1.8E-11 4E-16 104.3 5.6 58 66-129 1-59 (166)
245 COG2274 SunT ABC-type bacterio 99.2 1.3E-11 2.9E-16 126.8 5.5 68 65-141 471-540 (709)
246 PRK13633 cobalt transporter AT 99.2 1.3E-11 2.8E-16 113.7 4.9 59 64-128 3-67 (280)
247 PRK14272 phosphate ABC transpo 99.2 2.5E-11 5.4E-16 109.6 6.7 53 65-120 4-56 (252)
248 PRK13646 cbiO cobalt transport 99.2 1.2E-11 2.7E-16 114.2 4.8 58 65-128 2-64 (286)
249 cd00227 CPT Chloramphenicol (C 99.2 4E-10 8.6E-15 96.7 13.8 155 94-278 2-174 (175)
250 cd03250 ABCC_MRP_domain1 Domai 99.2 1.7E-11 3.7E-16 107.4 5.3 58 66-129 1-63 (204)
251 COG1135 AbcC ABC-type metal io 99.2 1.6E-11 3.4E-16 113.7 5.3 68 65-141 1-73 (339)
252 TIGR00968 3a0106s01 sulfate AB 99.2 1.3E-11 2.9E-16 110.8 4.7 57 66-128 1-57 (237)
253 PRK13650 cbiO cobalt transport 99.2 1.4E-11 3.1E-16 113.5 5.0 58 65-128 4-64 (279)
254 cd03244 ABCC_MRP_domain2 Domai 99.2 1.5E-11 3.3E-16 108.8 4.9 65 66-139 3-69 (221)
255 PRK10418 nikD nickel transport 99.2 1.5E-11 3.2E-16 111.6 5.0 60 65-128 4-64 (254)
256 PRK11147 ABC transporter ATPas 99.2 1.7E-11 3.6E-16 125.1 5.9 59 64-128 2-60 (635)
257 PRK14531 adenylate kinase; Pro 99.2 9.2E-10 2E-14 95.2 15.9 164 95-278 3-182 (183)
258 PRK14246 phosphate ABC transpo 99.2 2E-11 4.4E-16 111.1 5.8 55 63-120 8-62 (257)
259 PRK14275 phosphate ABC transpo 99.2 1.9E-11 4.1E-16 113.0 5.7 55 62-119 36-90 (286)
260 PRK13631 cbiO cobalt transport 99.2 1.7E-11 3.7E-16 115.3 5.4 60 64-129 20-84 (320)
261 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.2 1.3E-11 2.9E-16 110.5 4.4 64 66-138 1-67 (238)
262 PRK13808 adenylate kinase; Pro 99.2 9.2E-10 2E-14 103.9 17.0 170 96-283 2-196 (333)
263 cd03369 ABCC_NFT1 Domain 2 of 99.2 2.1E-11 4.5E-16 107.1 5.5 66 65-139 6-73 (207)
264 PRK15079 oligopeptide ABC tran 99.2 1.6E-11 3.5E-16 116.1 5.1 66 64-138 7-85 (331)
265 PRK13634 cbiO cobalt transport 99.2 1.4E-11 3.1E-16 114.1 4.6 57 66-128 3-64 (290)
266 TIGR03797 NHPM_micro_ABC2 NHPM 99.2 1.6E-11 3.4E-16 126.1 5.3 68 65-141 451-520 (686)
267 cd03253 ABCC_ATM1_transporter 99.2 1.5E-11 3.3E-16 109.8 4.6 64 66-138 1-65 (236)
268 PRK11288 araG L-arabinose tran 99.2 1.8E-11 3.8E-16 121.4 5.4 59 64-128 3-61 (501)
269 PRK14252 phosphate ABC transpo 99.2 4.7E-11 1E-15 108.9 7.5 55 63-120 14-68 (265)
270 PRK11819 putative ABC transpor 99.2 2.3E-11 4.9E-16 122.3 5.9 59 64-128 5-64 (556)
271 COG1129 MglA ABC-type sugar tr 99.2 1.9E-11 4.1E-16 120.2 5.1 67 63-138 6-72 (500)
272 TIGR01193 bacteriocin_ABC ABC- 99.2 2E-11 4.4E-16 125.7 5.6 68 65-141 473-541 (708)
273 PRK14249 phosphate ABC transpo 99.2 3.6E-11 7.8E-16 108.7 6.6 54 64-120 3-56 (251)
274 PRK15064 ABC transporter ATP-b 99.2 2.5E-11 5.4E-16 121.1 6.0 58 65-128 1-58 (530)
275 COG1118 CysA ABC-type sulfate/ 99.2 1.1E-11 2.5E-16 114.5 3.3 63 65-136 2-64 (345)
276 COG1936 Predicted nucleotide k 99.2 2.5E-11 5.3E-16 103.9 5.1 151 96-280 2-156 (180)
277 COG4152 ABC-type uncharacteriz 99.2 1.5E-11 3.2E-16 110.7 3.6 58 65-128 2-59 (300)
278 PRK11176 lipid transporter ATP 99.2 2.9E-11 6.4E-16 121.6 6.3 68 65-141 341-410 (582)
279 cd03222 ABC_RNaseL_inhibitor T 99.2 4.9E-11 1.1E-15 103.3 6.7 60 69-138 4-63 (177)
280 COG4181 Predicted ABC-type tra 99.2 1.8E-11 3.8E-16 105.2 3.8 78 65-152 6-87 (228)
281 TIGR03796 NHPM_micro_ABC1 NHPM 99.2 2.4E-11 5.1E-16 125.2 5.6 68 65-141 477-546 (710)
282 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.2 9.7E-12 2.1E-16 110.9 2.3 58 66-129 23-80 (224)
283 PRK10771 thiQ thiamine transpo 99.2 2.3E-11 4.9E-16 108.7 4.7 57 65-129 1-57 (232)
284 PLN02200 adenylate kinase fami 99.2 2.7E-09 5.8E-14 96.3 17.8 168 94-283 43-227 (234)
285 COG4555 NatA ABC-type Na+ tran 99.2 1.1E-11 2.3E-16 108.8 2.0 58 65-128 1-59 (245)
286 cd03288 ABCC_SUR2 The SUR doma 99.2 2.9E-11 6.3E-16 109.9 4.9 60 64-129 18-79 (257)
287 COG1132 MdlB ABC-type multidru 99.2 3.3E-11 7.1E-16 121.1 5.7 68 65-141 328-396 (567)
288 cd03298 ABC_ThiQ_thiamine_tran 99.2 3E-11 6.4E-16 106.3 4.6 62 66-138 1-62 (211)
289 cd03294 ABC_Pro_Gly_Bertaine T 99.1 1.3E-11 2.8E-16 113.1 2.4 56 67-128 26-81 (269)
290 PRK13640 cbiO cobalt transport 99.1 2.8E-11 6.1E-16 111.6 4.6 55 64-121 4-60 (282)
291 TIGR02857 CydD thiol reductant 99.1 3.6E-11 7.7E-16 119.7 5.7 68 65-141 320-389 (529)
292 TIGR03574 selen_PSTK L-seryl-t 99.1 3.4E-10 7.3E-15 102.4 11.5 154 97-280 2-169 (249)
293 PRK14526 adenylate kinase; Pro 99.1 2.2E-09 4.8E-14 95.5 16.5 107 96-208 2-123 (211)
294 PRK14244 phosphate ABC transpo 99.1 3.7E-11 8.1E-16 108.6 5.3 51 66-119 6-56 (251)
295 PRK02496 adk adenylate kinase; 99.1 1.9E-09 4.2E-14 92.9 15.7 162 95-278 2-182 (184)
296 PRK00279 adk adenylate kinase; 99.1 1.7E-09 3.7E-14 95.8 15.6 107 96-208 2-128 (215)
297 TIGR02633 xylG D-xylose ABC tr 99.1 3.3E-11 7.1E-16 119.4 5.1 53 65-120 1-53 (500)
298 PRK14258 phosphate ABC transpo 99.1 6.3E-11 1.4E-15 107.9 6.5 53 65-120 7-59 (261)
299 PRK13651 cobalt transporter AT 99.1 4.4E-11 9.5E-16 111.8 5.4 58 65-128 2-64 (305)
300 PRK04040 adenylate kinase; Pro 99.1 2.4E-09 5.2E-14 93.5 16.0 121 94-215 2-139 (188)
301 COG1117 PstB ABC-type phosphat 99.1 5.5E-11 1.2E-15 105.2 5.7 54 64-120 6-59 (253)
302 TIGR00958 3a01208 Conjugate Tr 99.1 4.3E-11 9.3E-16 123.5 5.8 68 65-141 478-548 (711)
303 COG4525 TauB ABC-type taurine 99.1 3.3E-11 7.2E-16 105.4 4.2 55 64-121 2-58 (259)
304 PRK10070 glycine betaine trans 99.1 3E-11 6.5E-16 116.9 4.3 45 78-128 41-85 (400)
305 PRK10636 putative ABC transpor 99.1 6.7E-11 1.4E-15 120.8 7.0 60 63-128 310-369 (638)
306 COG0488 Uup ATPase components 99.1 5E-11 1.1E-15 118.9 5.9 59 64-128 2-60 (530)
307 cd02021 GntK Gluconate kinase 99.1 2.3E-10 4.9E-15 95.2 8.9 109 97-211 2-122 (150)
308 PRK11160 cysteine/glutathione 99.1 4.6E-11 1E-15 120.4 5.6 68 65-141 338-407 (574)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 5.3E-11 1.1E-15 119.5 5.9 59 64-128 3-62 (552)
310 PRK08233 hypothetical protein; 99.1 8.9E-10 1.9E-14 93.9 12.7 167 94-280 3-177 (182)
311 TIGR03375 type_I_sec_LssB type 99.1 4.6E-11 1E-15 122.8 5.5 68 65-141 463-532 (694)
312 PRK10790 putative multidrug tr 99.1 4.8E-11 1E-15 120.4 5.5 67 65-140 340-407 (592)
313 PRK13642 cbiO cobalt transport 99.1 4.1E-11 8.9E-16 110.2 4.5 58 65-128 4-64 (277)
314 PRK03333 coaE dephospho-CoA ki 99.1 7.3E-10 1.6E-14 107.2 13.4 159 96-283 3-195 (395)
315 PRK11147 ABC transporter ATPas 99.1 7.6E-11 1.6E-15 120.3 6.8 54 64-120 318-371 (635)
316 PTZ00322 6-phosphofructo-2-kin 99.1 1.7E-11 3.6E-16 125.7 2.0 149 94-248 215-380 (664)
317 cd03299 ABC_ModC_like Archeal 99.1 4.1E-11 8.8E-16 107.5 4.2 56 66-128 1-56 (235)
318 PRK15064 ABC transporter ATP-b 99.1 7.1E-11 1.5E-15 117.9 6.1 59 64-128 318-376 (530)
319 PRK14264 phosphate ABC transpo 99.1 5.5E-11 1.2E-15 111.0 5.0 52 65-119 45-96 (305)
320 PRK14527 adenylate kinase; Pro 99.1 3.4E-09 7.3E-14 92.1 15.9 166 94-278 6-190 (191)
321 cd03234 ABCG_White The White s 99.1 4.3E-11 9.4E-16 106.5 4.0 59 65-129 3-68 (226)
322 PRK10522 multidrug transporter 99.1 5.7E-11 1.2E-15 119.0 5.3 67 65-140 322-389 (547)
323 PRK14263 phosphate ABC transpo 99.1 6.8E-11 1.5E-15 107.9 5.3 54 64-120 7-60 (261)
324 PRK15134 microcin C ABC transp 99.1 6.4E-11 1.4E-15 118.2 5.3 54 64-120 4-61 (529)
325 cd03290 ABCC_SUR1_N The SUR do 99.1 5.5E-11 1.2E-15 105.2 4.3 63 67-138 2-65 (218)
326 PRK13657 cyclic beta-1,2-gluca 99.1 7E-11 1.5E-15 119.2 5.5 67 65-140 334-401 (588)
327 PRK00081 coaE dephospho-CoA ki 99.1 2.7E-09 5.9E-14 93.3 14.8 38 95-133 3-40 (194)
328 COG4133 CcmA ABC-type transpor 99.1 4.7E-11 1E-15 103.6 3.4 66 65-139 2-67 (209)
329 PRK11174 cysteine/glutathione 99.1 6.7E-11 1.5E-15 119.2 5.0 67 65-141 349-416 (588)
330 PRK10938 putative molybdenum t 99.1 8.6E-11 1.9E-15 116.1 5.7 53 64-119 259-311 (490)
331 TIGR01277 thiQ thiamine ABC tr 99.1 5.7E-11 1.2E-15 104.8 3.9 62 66-138 1-62 (213)
332 TIGR03269 met_CoM_red_A2 methy 99.1 8.9E-11 1.9E-15 116.9 5.6 57 66-128 1-59 (520)
333 COG1122 CbiO ABC-type cobalt t 99.1 9.3E-11 2E-15 105.9 5.1 59 64-128 2-61 (235)
334 TIGR01188 drrA daunorubicin re 99.1 5.4E-11 1.2E-15 110.8 3.6 50 73-128 1-50 (302)
335 TIGR02203 MsbA_lipidA lipid A 99.1 1E-10 2.3E-15 117.2 5.8 67 65-140 330-398 (571)
336 PRK10982 galactose/methyl gala 99.1 6.4E-11 1.4E-15 117.1 4.1 56 68-129 1-56 (491)
337 PRK11819 putative ABC transpor 99.1 1.1E-10 2.5E-15 117.2 6.0 59 64-128 323-381 (556)
338 KOG0056 Heavy metal exporter H 99.1 2.3E-10 5E-15 111.4 7.7 87 46-141 518-605 (790)
339 TIGR01166 cbiO cobalt transpor 99.1 6.2E-11 1.3E-15 102.7 3.3 55 75-138 2-56 (190)
340 TIGR01351 adk adenylate kinase 99.1 5.6E-09 1.2E-13 92.1 15.8 106 97-208 2-125 (210)
341 TIGR02204 MsbA_rel ABC transpo 99.1 1.2E-10 2.6E-15 116.9 5.7 68 65-141 337-407 (576)
342 PRK14528 adenylate kinase; Pro 99.1 7.5E-09 1.6E-13 90.0 16.2 161 95-277 2-185 (186)
343 PRK11144 modC molybdate transp 99.1 1.1E-10 2.4E-15 111.1 5.1 55 65-128 1-55 (352)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 99.1 1.3E-10 2.8E-15 116.7 5.8 59 64-128 321-379 (552)
345 TIGR01194 cyc_pep_trnsptr cycl 99.1 1.1E-10 2.4E-15 117.2 5.3 68 65-141 337-409 (555)
346 TIGR01842 type_I_sec_PrtD type 99.1 1.2E-10 2.6E-15 116.5 5.5 68 65-141 316-385 (544)
347 TIGR01846 type_I_sec_HlyB type 99.1 1.3E-10 2.9E-15 119.5 5.6 68 65-141 455-524 (694)
348 PRK10261 glutathione transport 99.1 2.3E-10 5E-15 116.6 6.9 54 64-120 11-68 (623)
349 cd01428 ADK Adenylate kinase ( 99.1 3.4E-09 7.3E-14 91.4 13.2 107 96-208 1-126 (194)
350 PRK10261 glutathione transport 99.1 1.4E-10 3E-15 118.2 5.1 60 64-129 312-382 (623)
351 KOG0057 Mitochondrial Fe/S clu 99.0 1.7E-10 3.8E-15 113.3 5.4 67 65-141 351-418 (591)
352 PRK13549 xylose transporter AT 99.0 9.9E-11 2.1E-15 116.2 3.7 61 64-129 258-321 (506)
353 COG4136 ABC-type uncharacteriz 99.0 1.7E-10 3.6E-15 97.4 4.3 69 65-139 2-70 (213)
354 PTZ00088 adenylate kinase 1; P 99.0 1.2E-08 2.6E-13 91.9 16.6 109 94-207 6-130 (229)
355 TIGR01192 chvA glucan exporter 99.0 1.7E-10 3.7E-15 116.6 5.3 66 65-139 334-400 (585)
356 PRK10789 putative multidrug tr 99.0 1.9E-10 4.1E-15 115.8 5.5 66 65-139 313-380 (569)
357 COG1137 YhbG ABC-type (unclass 99.0 1.7E-11 3.6E-16 107.5 -1.8 60 64-129 3-62 (243)
358 PRK14734 coaE dephospho-CoA ki 99.0 1E-08 2.2E-13 90.3 15.8 37 96-133 3-39 (200)
359 PRK14257 phosphate ABC transpo 99.0 2.6E-10 5.5E-15 107.8 5.9 54 64-120 79-134 (329)
360 TIGR02633 xylG D-xylose ABC tr 99.0 1.2E-10 2.5E-15 115.4 3.7 61 64-129 256-319 (500)
361 COG4988 CydD ABC-type transpor 99.0 2.7E-10 5.8E-15 112.9 6.1 68 65-141 320-388 (559)
362 TIGR03269 met_CoM_red_A2 methy 99.0 2.4E-10 5.1E-15 113.9 5.8 61 63-129 277-342 (520)
363 PRK08118 topology modulation p 99.0 2.7E-09 5.9E-14 91.3 11.6 96 95-207 2-99 (167)
364 COG1123 ATPase components of v 99.0 2.1E-10 4.7E-15 113.6 5.2 67 62-137 277-354 (539)
365 cd03291 ABCC_CFTR1 The CFTR su 99.0 2.7E-10 5.9E-15 105.5 5.6 57 64-128 38-94 (282)
366 cd00267 ABC_ATPase ABC (ATP-bi 99.0 2.8E-10 6.1E-15 95.7 5.2 62 68-138 2-63 (157)
367 cd03289 ABCC_CFTR2 The CFTR su 99.0 2.2E-10 4.7E-15 105.7 4.8 51 66-119 3-55 (275)
368 PRK15134 microcin C ABC transp 99.0 1.6E-10 3.5E-15 115.3 4.3 59 64-129 274-343 (529)
369 COG1134 TagH ABC-type polysacc 99.0 2.1E-10 4.4E-15 103.2 4.4 47 76-128 38-84 (249)
370 PRK14733 coaE dephospho-CoA ki 99.0 1.1E-08 2.5E-13 90.5 15.3 162 95-282 7-200 (204)
371 PLN02459 probable adenylate ki 99.0 1.3E-08 2.9E-13 93.1 16.1 109 95-207 30-153 (261)
372 COG0488 Uup ATPase components 99.0 3.4E-10 7.4E-15 113.0 6.0 63 61-129 317-380 (530)
373 TIGR00152 dephospho-CoA kinase 99.0 7E-09 1.5E-13 89.9 13.4 38 96-133 1-38 (188)
374 COG2019 AdkA Archaeal adenylat 99.0 2.2E-08 4.7E-13 85.6 15.7 167 95-280 5-188 (189)
375 PLN03073 ABC transporter F fam 99.0 3.8E-10 8.3E-15 116.6 6.2 59 64-128 507-566 (718)
376 COG4107 PhnK ABC-type phosphon 99.0 1.8E-10 3.8E-15 99.4 3.1 61 63-129 4-64 (258)
377 PRK14529 adenylate kinase; Pro 99.0 1.7E-08 3.8E-13 90.5 16.0 106 96-208 2-127 (223)
378 PRK09700 D-allose transporter 99.0 2E-10 4.3E-15 114.2 3.7 64 64-138 264-327 (510)
379 TIGR02142 modC_ABC molybdenum 99.0 3E-10 6.6E-15 108.2 4.8 51 70-128 4-54 (354)
380 cd03267 ABC_NatA_like Similar 99.0 3E-10 6.5E-15 102.0 4.4 51 73-129 29-79 (236)
381 PRK05506 bifunctional sulfate 99.0 1.1E-09 2.4E-14 111.7 9.1 156 94-280 460-628 (632)
382 cd02023 UMPK Uridine monophosp 99.0 1.7E-09 3.7E-14 94.3 8.9 34 96-129 1-37 (198)
383 PLN03073 ABC transporter F fam 99.0 5.4E-10 1.2E-14 115.5 6.6 52 64-118 176-227 (718)
384 TIGR01186 proV glycine betaine 99.0 2E-10 4.4E-15 109.9 2.9 50 73-128 1-50 (363)
385 PRK14731 coaE dephospho-CoA ki 99.0 2.9E-08 6.2E-13 87.8 16.3 37 95-132 6-42 (208)
386 PRK13545 tagH teichoic acids e 99.0 6.5E-10 1.4E-14 110.6 6.2 59 64-128 20-81 (549)
387 PLN03232 ABC transporter C fam 99.0 4.9E-10 1.1E-14 123.9 5.5 68 65-141 1234-1303(1495)
388 KOG0055 Multidrug/pheromone ex 99.0 4.9E-10 1.1E-14 119.0 5.1 68 64-140 349-419 (1228)
389 PTZ00265 multidrug resistance 99.0 6.2E-10 1.3E-14 122.7 5.9 53 65-120 1165-1220(1466)
390 cd03236 ABC_RNaseL_inhibitor_d 99.0 5.5E-10 1.2E-14 101.9 4.5 53 69-128 4-57 (255)
391 cd01672 TMPK Thymidine monopho 99.0 5.3E-08 1.1E-12 83.6 16.6 23 96-118 2-24 (200)
392 cd03297 ABC_ModC_molybdenum_tr 98.9 6.9E-10 1.5E-14 97.9 4.8 60 66-138 2-61 (214)
393 PF13671 AAA_33: AAA domain; P 98.9 3.7E-09 8E-14 86.6 8.8 110 96-209 1-120 (143)
394 PLN03130 ABC transporter C fam 98.9 5.7E-10 1.2E-14 124.1 5.2 68 65-141 1237-1306(1622)
395 COG0444 DppD ABC-type dipeptid 98.9 6.2E-10 1.3E-14 103.6 4.6 69 65-139 1-75 (316)
396 COG3845 ABC-type uncharacteriz 98.9 6.9E-10 1.5E-14 108.1 4.9 66 64-138 3-68 (501)
397 PTZ00243 ABC transporter; Prov 98.9 7.3E-10 1.6E-14 122.9 5.3 68 65-141 1308-1377(1560)
398 PTZ00265 multidrug resistance 98.9 9.3E-10 2E-14 121.3 5.9 59 65-129 382-443 (1466)
399 PRK14730 coaE dephospho-CoA ki 98.9 3.3E-08 7.2E-13 86.7 14.3 39 95-133 2-40 (195)
400 PLN02165 adenylate isopentenyl 98.9 3.2E-09 6.9E-14 100.2 8.2 113 94-207 43-195 (334)
401 PRK13546 teichoic acids export 98.9 1.3E-09 2.9E-14 99.8 5.4 40 78-120 37-76 (264)
402 TIGR00957 MRP_assoc_pro multi 98.9 9.5E-10 2.1E-14 121.9 5.2 68 65-141 1284-1353(1522)
403 PLN02422 dephospho-CoA kinase 98.9 4.8E-08 1E-12 88.2 15.2 37 96-133 3-39 (232)
404 PRK00300 gmk guanylate kinase; 98.9 2E-08 4.3E-13 87.7 12.4 26 94-119 5-30 (205)
405 PHA02530 pseT polynucleotide k 98.9 1.7E-08 3.7E-13 93.3 12.6 115 95-209 3-125 (300)
406 PF00005 ABC_tran: ABC transpo 98.9 3.8E-10 8.2E-15 92.1 1.2 51 81-140 1-51 (137)
407 PRK15177 Vi polysaccharide exp 98.9 1E-09 2.2E-14 97.3 4.0 44 79-128 1-44 (213)
408 TIGR00954 3a01203 Peroxysomal 98.9 1.7E-09 3.6E-14 111.0 6.0 58 65-128 451-509 (659)
409 PRK14732 coaE dephospho-CoA ki 98.9 9.6E-08 2.1E-12 84.0 16.3 159 97-284 2-194 (196)
410 PRK10535 macrolide transporter 98.9 1.3E-09 2.8E-14 111.6 5.0 58 65-128 4-65 (648)
411 PRK10982 galactose/methyl gala 98.9 7.9E-10 1.7E-14 109.3 3.2 58 64-129 249-306 (491)
412 COG4167 SapF ABC-type antimicr 98.9 7.9E-10 1.7E-14 96.0 2.7 76 64-153 3-87 (267)
413 COG3840 ThiQ ABC-type thiamine 98.9 1.4E-09 3E-14 94.4 4.1 57 65-129 1-57 (231)
414 PRK13409 putative ATPase RIL; 98.9 2.5E-09 5.4E-14 108.4 6.0 58 64-128 339-396 (590)
415 PF07931 CPT: Chloramphenicol 98.9 2.2E-08 4.7E-13 86.6 10.9 154 94-279 1-174 (174)
416 KOG0055 Multidrug/pheromone ex 98.9 1.9E-09 4.1E-14 114.6 5.1 68 65-141 987-1057(1228)
417 TIGR03415 ABC_choXWV_ATP choli 98.9 1.2E-09 2.7E-14 105.1 3.1 54 69-128 28-81 (382)
418 PLN03211 ABC transporter G-25; 98.9 1.2E-09 2.6E-14 112.1 3.1 51 67-120 70-120 (659)
419 TIGR01257 rim_protein retinal- 98.8 2E-09 4.4E-14 120.9 5.0 59 64-128 1936-1996(2272)
420 PRK05480 uridine/cytidine kina 98.8 2.9E-08 6.3E-13 87.3 11.4 36 94-129 6-44 (209)
421 PLN02842 nucleotide kinase 98.8 9.5E-08 2.1E-12 94.7 16.0 173 99-284 2-206 (505)
422 COG4615 PvdE ABC-type sideroph 98.8 4.7E-09 1E-13 100.2 6.5 82 65-159 322-404 (546)
423 TIGR01184 ntrCD nitrate transp 98.8 1.7E-09 3.6E-14 96.8 3.0 43 81-129 1-43 (230)
424 COG1123 ATPase components of v 98.8 3E-09 6.5E-14 105.6 5.0 69 64-138 4-77 (539)
425 TIGR02770 nickel_nikD nickel i 98.8 2E-09 4.2E-14 96.2 3.3 38 80-120 1-38 (230)
426 COG4598 HisP ABC-type histidin 98.8 1.6E-09 3.5E-14 93.9 2.4 60 64-129 5-64 (256)
427 COG4674 Uncharacterized ABC-ty 98.8 1.9E-09 4.1E-14 94.5 2.7 60 64-129 4-63 (249)
428 PRK13973 thymidylate kinase; P 98.8 1.7E-07 3.7E-12 83.1 15.1 173 93-283 2-209 (213)
429 PRK13409 putative ATPase RIL; 98.8 4.9E-09 1.1E-13 106.3 5.7 52 70-128 78-130 (590)
430 PRK00698 tmk thymidylate kinas 98.8 9.1E-08 2E-12 83.1 12.7 26 93-118 2-27 (205)
431 PRK10762 D-ribose transporter 98.8 3.1E-09 6.8E-14 105.4 3.3 55 64-129 256-310 (501)
432 PRK11288 araG L-arabinose tran 98.8 3.1E-09 6.7E-14 105.5 3.2 55 65-129 257-311 (501)
433 TIGR01257 rim_protein retinal- 98.8 4.9E-09 1.1E-13 117.9 4.8 59 64-128 927-987 (2272)
434 TIGR01271 CFTR_protein cystic 98.8 6.5E-09 1.4E-13 115.1 5.2 66 65-140 1217-1284(1490)
435 PRK14738 gmk guanylate kinase; 98.8 1.8E-07 3.9E-12 82.6 13.3 25 93-117 12-36 (206)
436 COG4778 PhnL ABC-type phosphon 98.8 9.1E-09 2E-13 88.5 4.8 62 65-132 4-72 (235)
437 PRK13974 thymidylate kinase; P 98.7 7.3E-07 1.6E-11 79.0 17.1 27 93-119 2-28 (212)
438 PRK03695 vitamin B12-transport 98.7 6E-09 1.3E-13 94.3 3.8 46 67-119 2-47 (248)
439 COG4618 ArpD ABC-type protease 98.7 9.9E-09 2.2E-13 100.4 5.3 56 63-121 332-389 (580)
440 PRK15439 autoinducer 2 ABC tra 98.7 4.7E-09 1E-13 104.5 3.1 54 64-128 267-320 (510)
441 COG1101 PhnK ABC-type uncharac 98.7 4.2E-09 9E-14 93.5 2.2 68 65-141 1-73 (263)
442 TIGR00956 3a01205 Pleiotropic 98.7 9.3E-09 2E-13 113.2 5.0 61 65-128 759-823 (1394)
443 PRK12339 2-phosphoglycerate ki 98.7 3.6E-07 7.7E-12 80.5 14.1 167 94-278 3-195 (197)
444 cd03238 ABC_UvrA The excision 98.7 1.1E-08 2.5E-13 88.4 4.4 36 77-115 7-42 (176)
445 cd02022 DPCK Dephospho-coenzym 98.7 2.4E-07 5.3E-12 79.8 11.9 37 96-133 1-37 (179)
446 COG1428 Deoxynucleoside kinase 98.7 7.5E-07 1.6E-11 78.8 15.0 83 188-283 128-211 (216)
447 PF13207 AAA_17: AAA domain; P 98.7 2.4E-08 5.2E-13 79.7 4.9 34 96-129 1-34 (121)
448 cd02030 NDUO42 NADH:Ubiquinone 98.7 6.4E-07 1.4E-11 79.7 14.1 70 188-275 144-216 (219)
449 TIGR00041 DTMP_kinase thymidyl 98.7 1E-06 2.2E-11 76.2 14.9 28 93-120 2-29 (195)
450 KOG0054 Multidrug resistance-a 98.7 3.3E-08 7.2E-13 107.1 6.8 75 58-141 1130-1207(1381)
451 COG0563 Adk Adenylate kinase a 98.6 4.9E-07 1.1E-11 78.5 12.6 38 96-133 2-39 (178)
452 TIGR00235 udk uridine kinase. 98.6 1.8E-07 4E-12 82.3 10.0 35 94-128 6-43 (207)
453 cd03237 ABC_RNaseL_inhibitor_d 98.6 2.1E-08 4.5E-13 91.0 3.7 47 79-128 8-56 (246)
454 COG0237 CoaE Dephospho-CoA kin 98.6 4.7E-07 1E-11 80.1 12.1 38 94-132 2-39 (201)
455 PRK07261 topology modulation p 98.6 7.2E-08 1.6E-12 82.8 6.5 97 96-207 2-99 (171)
456 PTZ00451 dephospho-CoA kinase; 98.6 1.8E-06 3.9E-11 78.5 15.8 38 96-133 3-40 (244)
457 COG4586 ABC-type uncharacteriz 98.6 1.8E-08 4E-13 92.2 2.5 44 79-128 38-81 (325)
458 cd00820 PEPCK_HprK Phosphoenol 98.6 3.6E-08 7.9E-13 78.6 3.9 35 78-115 2-36 (107)
459 KOG0927 Predicted transporter 98.6 3E-08 6.4E-13 97.7 3.9 59 60-121 384-443 (614)
460 COG0529 CysC Adenylylsulfate k 98.6 1.2E-07 2.6E-12 81.8 7.1 156 94-281 23-192 (197)
461 COG4175 ProV ABC-type proline/ 98.6 7.1E-08 1.5E-12 90.0 6.1 91 65-165 4-119 (386)
462 PF03668 ATP_bind_2: P-loop AT 98.6 1.7E-06 3.6E-11 80.0 15.0 69 189-279 84-155 (284)
463 PRK09270 nucleoside triphospha 98.6 3.2E-07 7E-12 82.1 10.0 42 166-207 138-181 (229)
464 KOG3347 Predicted nucleotide k 98.6 5.7E-07 1.2E-11 75.7 10.5 139 94-250 7-148 (176)
465 COG4161 ArtP ABC-type arginine 98.6 4.6E-08 9.9E-13 83.7 4.0 57 66-128 3-59 (242)
466 PLN03232 ABC transporter C fam 98.6 6E-08 1.3E-12 107.6 6.0 54 65-121 614-670 (1495)
467 TIGR00957 MRP_assoc_pro multi 98.6 5E-08 1.1E-12 108.4 5.4 53 65-120 636-690 (1522)
468 TIGR03263 guanyl_kin guanylate 98.6 1.1E-06 2.5E-11 74.9 12.5 27 94-120 1-27 (180)
469 PLN03130 ABC transporter C fam 98.5 6.7E-08 1.4E-12 107.8 5.4 54 65-121 614-670 (1622)
470 KOG3079 Uridylate kinase/adeny 98.5 3.2E-06 6.9E-11 73.3 14.5 168 94-280 8-193 (195)
471 COG3709 Uncharacterized compon 98.5 1.7E-06 3.8E-11 73.7 12.6 158 94-281 5-183 (192)
472 COG5265 ATM1 ABC-type transpor 98.5 1.2E-07 2.6E-12 91.2 6.2 68 65-141 262-330 (497)
473 PF13189 Cytidylate_kin2: Cyti 98.5 4.8E-07 1E-11 78.2 9.2 147 96-263 1-178 (179)
474 PRK14737 gmk guanylate kinase; 98.5 3.2E-06 7E-11 73.7 14.3 25 94-118 4-28 (186)
475 TIGR03238 dnd_assoc_3 dnd syst 98.5 7.1E-08 1.5E-12 94.7 3.7 52 79-140 20-71 (504)
476 cd02026 PRK Phosphoribulokinas 98.5 3.4E-07 7.3E-12 84.5 8.0 33 96-128 1-36 (273)
477 PLN03140 ABC transporter G fam 98.5 1.1E-07 2.5E-12 105.0 5.5 53 65-120 867-932 (1470)
478 PF00406 ADK: Adenylate kinase 98.5 7.8E-07 1.7E-11 74.2 9.4 102 99-206 1-122 (151)
479 TIGR03771 anch_rpt_ABC anchore 98.5 7.2E-08 1.6E-12 85.8 2.8 44 86-138 1-44 (223)
480 cd01673 dNK Deoxyribonucleosid 98.5 1.3E-06 2.7E-11 75.7 10.3 29 96-124 1-29 (193)
481 PF01583 APS_kinase: Adenylyls 98.5 3E-07 6.6E-12 78.1 6.2 103 94-203 2-116 (156)
482 PF13238 AAA_18: AAA domain; P 98.5 5.5E-07 1.2E-11 71.8 7.3 22 97-118 1-22 (129)
483 KOG0927 Predicted transporter 98.5 2.4E-07 5.2E-12 91.4 6.0 54 65-121 75-128 (614)
484 PF02224 Cytidylate_kin: Cytid 98.4 5.1E-07 1.1E-11 76.7 6.7 110 147-276 45-157 (157)
485 cd03270 ABC_UvrA_I The excisio 98.4 1.4E-07 3E-12 84.4 3.3 33 76-111 6-38 (226)
486 TIGR00955 3a01204 The Eye Pigm 98.4 1.1E-07 2.4E-12 96.9 3.1 42 76-120 36-77 (617)
487 PRK06696 uridine kinase; Valid 98.4 1.6E-06 3.4E-11 77.4 9.9 24 95-118 23-46 (223)
488 PRK07933 thymidylate kinase; V 98.4 1.8E-05 4E-10 70.3 16.6 76 188-278 134-211 (213)
489 smart00072 GuKc Guanylate kina 98.4 7.2E-06 1.6E-10 70.9 13.2 25 94-118 2-26 (184)
490 PLN03140 ABC transporter G fam 98.4 1.7E-07 3.6E-12 103.7 3.3 42 77-121 177-218 (1470)
491 PRK12338 hypothetical protein; 98.4 1.5E-05 3.2E-10 75.1 15.5 169 94-283 4-207 (319)
492 TIGR01271 CFTR_protein cystic 98.4 3.6E-07 7.8E-12 101.5 5.4 45 78-128 439-483 (1490)
493 COG0125 Tmk Thymidylate kinase 98.4 1.7E-05 3.7E-10 70.5 15.0 29 93-121 2-30 (208)
494 KOG0066 eIF2-interacting prote 98.4 3.6E-07 7.8E-12 88.5 4.5 55 64-121 585-640 (807)
495 cd02027 APSK Adenosine 5'-phos 98.4 1.6E-06 3.5E-11 72.7 7.9 103 96-204 1-114 (149)
496 COG4172 ABC-type uncharacteriz 98.4 1.5E-06 3.3E-11 83.5 8.6 68 64-141 275-353 (534)
497 KOG2355 Predicted ABC-type tra 98.3 4.7E-07 1E-11 80.2 4.4 53 64-119 12-65 (291)
498 PF01121 CoaE: Dephospho-CoA k 98.3 4.6E-06 9.9E-11 72.5 10.5 37 96-133 2-38 (180)
499 PF00625 Guanylate_kin: Guanyl 98.3 1.5E-05 3.3E-10 68.7 12.7 26 94-119 2-27 (183)
500 TIGR00956 3a01205 Pleiotropic 98.3 4.1E-07 8.9E-12 100.4 3.5 39 77-118 73-111 (1394)
No 1
>PLN02199 shikimate kinase
Probab=100.00 E-value=1.1e-56 Score=412.52 Aligned_cols=279 Identities=44% Similarity=0.698 Sum_probs=258.1
Q ss_pred cccceeeeecccccc-cccc--cccccccch------hhhhhh--cCccc-cccccccccCCCcCCCCCCCccEEEcceE
Q 023118 5 TYGSTLQFSTSVGGE-IGSF--NQNCKRQQT------QQHFIN--LNPLK-LKRHRTLNLVPAHVSKDSNAHDVESGTFC 72 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~--~~~~~~~~r------~~~~~~--~~~~r-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 72 (287)
.++|+||||+|++++ |+|| ++|++||+| ++++++ ++|.| .+++++++++++|+ +++++++|+.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~le~~~~~ 82 (303)
T PLN02199 4 AITQRIQYPSWVDCRKVECKPQRGSLRYSQQVKVDRRFRGLSLARLQPERRNDQRRAVSPAVSCS-DNNSSALLETGSVY 82 (303)
T ss_pred hhhhheeeeceecHhhhcCCCCCcceehhhccccccceeEEEeccccccccchhhhccccccccC-CCCchhhcccCCCC
Confidence 578999999999999 9988 799999997 678888 89999 78899999999999 66777799999999
Q ss_pred EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhh
Q 023118 73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFRE 152 (287)
Q Consensus 73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~ 152 (287)
+|++. .|++++.++.+++.|.+|+|+|++||||||++++||..++++|+|+|.++++...|+++.++|...|++.||+
T Consensus 83 -~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~ 160 (303)
T PLN02199 83 -PFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRG 160 (303)
T ss_pred -CCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHH
Confidence 89876 5999999999999999999999999999999999999999999999999999755999999999999999999
Q ss_pred hHHHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHH
Q 023118 153 YESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSA 232 (287)
Q Consensus 153 ~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~ 232 (287)
.|.++++++....+.||+||||+|.++.||.+|++|++|||++|++.+++||...+...||++..++++.|.++.+.+.+
T Consensus 161 ~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~ 240 (303)
T PLN02199 161 KETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSA 240 (303)
T ss_pred HHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHH
Confidence 99999999987778999999999999999999999999999999999999998644467999976666667667789999
Q ss_pred HHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhcC
Q 023118 233 LSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR 286 (287)
Q Consensus 233 l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~~ 286 (287)
+|++|.|+|++||++|+++|+|.++||-||+++||++|+.+|++.+.+++++++
T Consensus 241 L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~~ 294 (303)
T PLN02199 241 IWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKEE 294 (303)
T ss_pred HHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999998653
No 2
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-37 Score=261.31 Aligned_cols=167 Identities=36% Similarity=0.596 Sum_probs=150.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
...|+|||+|||||||+++.||+.|+++|+|+|.+|++.. |++|+++|..+|++.||+.|.++++++...++.|+||||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~-g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRT-GMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHH-CcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 4579999999999999999999999999999999999998 999999999999999999999999999988789999999
Q ss_pred ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118 174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL 251 (287)
Q Consensus 174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~ 251 (287)
|+|++++|++.|++ |++|||++|+|.+.+|+.. ...||++...+. .+.+.++|++|.|+|++ ||.++
T Consensus 81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~--~~~RPll~~~~~------~~~l~~L~~~R~~~Y~e~a~~~~--- 149 (172)
T COG0703 81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQR--DRKRPLLQTEDP------REELEELLEERQPLYREVADFII--- 149 (172)
T ss_pred ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhcc--ccCCCcccCCCh------HHHHHHHHHHHHHHHHHhCcEEe---
Confidence 99999999999985 8999999999999999983 357999986542 25689999999999998 67765
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 252 NLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
++++.+ ++++++|+..+..++
T Consensus 150 ---------~~~~~~-~~v~~~i~~~l~~~~ 170 (172)
T COG0703 150 ---------DTDDRS-EEVVEEILEALEGSL 170 (172)
T ss_pred ---------cCCCCc-HHHHHHHHHHHHHhc
Confidence 666655 999999999987654
No 3
>PRK13948 shikimate kinase; Provisional
Probab=100.00 E-value=1e-32 Score=239.67 Aligned_cols=168 Identities=29% Similarity=0.485 Sum_probs=152.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
+..|+|+|++||||||+++.||..++++|+|+|.++++.. |+++.++|...|+..||+.|.++++++....+.|++|||
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~-g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~Gg 88 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVT-GKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGG 88 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHH-hCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 6899999999999999999999999999999999999998 999999999999999999999999999877888999999
Q ss_pred ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccc
Q 023118 174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLN 252 (287)
Q Consensus 174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~ 252 (287)
|+++++.|+..|++ |.+|||++|++++.+|+.. ..||++.... + .+++.++|++|.|+|+.||++|
T Consensus 89 G~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~---~~RPll~~~~--~----~~~l~~l~~~R~~~Y~~a~~~i---- 155 (182)
T PRK13948 89 GTFMHEENRRKLLSRGPVVVLWASPETIYERTRP---GDRPLLQVED--P----LGRIRTLLNEREPVYRQATIHV---- 155 (182)
T ss_pred cEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcC---CCCCCCCCCC--h----HHHHHHHHHHHHHHHHhCCEEE----
Confidence 99999999988875 8999999999999999953 4699986432 2 3678999999999998888876
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 253 LAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 253 ~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
||++.++++++++|++.+..++.
T Consensus 156 --------~t~~~~~~ei~~~i~~~l~~~~~ 178 (182)
T PRK13948 156 --------STDGRRSEEVVEEIVEKLWAWAE 178 (182)
T ss_pred --------ECCCCCHHHHHHHHHHHHHHHhh
Confidence 78899999999999999987653
No 4
>PRK13949 shikimate kinase; Provisional
Probab=100.00 E-value=1.1e-31 Score=230.39 Aligned_cols=166 Identities=31% Similarity=0.469 Sum_probs=147.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG 174 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG 174 (287)
..|+|+||+||||||+++.||+.++++|+|.|.++++.+ |.++.++|...|++.||+.|.++++++....+.|+++|||
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~-~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRF-HKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHH-CccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 469999999999999999999999999999999999988 8899999999999999999999999987667889999999
Q ss_pred eEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecccc
Q 023118 175 AVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNL 253 (287)
Q Consensus 175 ~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~ 253 (287)
++..+.++.+|++ |++|||++|++++.+|+.... ..||++...+.+. .++.+.++|++|.|+|++||++|
T Consensus 81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~-~~RP~~~~~~~~~---~~~~i~~l~~~R~~~Y~~ad~~i----- 151 (169)
T PRK13949 81 APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK-QQRPLLKGKSDEE---LLDFIIEALEKRAPFYRQAKIIF----- 151 (169)
T ss_pred ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC-CCCCCCCCCChHH---HHHHHHHHHHHHHHHHHhCCEEE-----
Confidence 9999999999975 999999999999999997542 4699886433222 24678999999999999999765
Q ss_pred ccccccccCCCCCHHHHHHHHHHH
Q 023118 254 AACIGLKDVLDITPTTIAMEVLVQ 277 (287)
Q Consensus 254 a~~~~~idt~~~t~~eva~~i~~~ 277 (287)
|+++++|+|++++|++.
T Consensus 152 -------d~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 152 -------NADKLEDESQIEQLVQR 168 (169)
T ss_pred -------ECCCCCHHHHHHHHHHh
Confidence 88999999999999875
No 5
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.97 E-value=7.5e-30 Score=219.45 Aligned_cols=166 Identities=32% Similarity=0.507 Sum_probs=148.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
..+|+|+||+||||||+++.|++.++++|+|+|..+++.. |.++.++|...|+..||..|.++++++....+.|+++||
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~-g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~gg 82 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGG 82 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHh-CcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 5689999999999999999999999999999999998887 899999999999999999999999998877788999999
Q ss_pred ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118 174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL 251 (287)
Q Consensus 174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~ 251 (287)
|++.++.++.+|++ |++|||++|++.+.+|+..+ ..||++.... . .+.+.+++++|.|+|++ ||++|
T Consensus 83 g~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~--~~rP~~~~~~--~----~~~~~~l~~~R~~~Y~~~Ad~~i--- 151 (172)
T PRK05057 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRD--KKRPLLQVDD--P----REVLEALANERNPLYEEIADVTI--- 151 (172)
T ss_pred chhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCC--CCCCCCCCCC--H----HHHHHHHHHHHHHHHHhhCCEEE---
Confidence 99999999999974 99999999999999999753 4699886422 1 24588999999999998 89876
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 252 NLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
||++++++++++.|++.++.
T Consensus 152 ---------dt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 152 ---------RTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred ---------ECCCCCHHHHHHHHHHHHhh
Confidence 89999999999999988754
No 6
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.97 E-value=6e-30 Score=255.26 Aligned_cols=165 Identities=27% Similarity=0.424 Sum_probs=149.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
-..|+|+|+|||||||+++.||..++++|+|+|.++++.. |++++++|.++|++.||+.|.++++++....+.||+|||
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~-g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GG 84 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREI-GMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGG 84 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 4679999999999999999999999999999999999998 999999999999999999999999998866788999999
Q ss_pred ceEeccccHHhh----c-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeE
Q 023118 174 GAVVRPLNWRFM----R-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADAT 247 (287)
Q Consensus 174 G~v~~~~~~~~L----~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~ 247 (287)
|+|+++.|+.+| + .|++|||++|++++++|+... ..||++... + .+++.++|++|+|+|++ ||++
T Consensus 85 G~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~--~~RPll~~~---~----~~~~~~l~~~R~~~Y~~~Ad~~ 155 (542)
T PRK14021 85 GAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRG--GGRPMLNGD---A----NKRWKKLFKQRDPVFRQVANVH 155 (542)
T ss_pred chhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCC--CCCCCCCCC---c----HHHHHHHHHHHHHHHHhhCCEE
Confidence 999999999865 4 389999999999999999753 469998542 1 25789999999999998 8998
Q ss_pred EeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 248 VSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 248 v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
| ||++.+|++++++|++.+..
T Consensus 156 i------------~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 156 V------------HTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred E------------ECCCCCHHHHHHHHHHHHHh
Confidence 6 78899999999999998865
No 7
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.96 E-value=4.6e-30 Score=217.48 Aligned_cols=156 Identities=37% Similarity=0.553 Sum_probs=135.5
Q ss_pred CCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCceEeccccH
Q 023118 103 MGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNW 182 (287)
Q Consensus 103 ~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~ 182 (287)
|||||||++++||..|+++|+|+|.++++.. |+++.++|...|++.||..|.++++++....+.||+||||+++.+.++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~-g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERT-GMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHh-CCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 7999999999999999999999999999998 999999999999999999999999999988799999999999999999
Q ss_pred Hhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccc
Q 023118 183 RFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLK 260 (287)
Q Consensus 183 ~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~i 260 (287)
++|+ .|.+|||+++++.+.+|+..+.. ||++..... ...+.+++.+|.|.|+. +++++
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~~--Rp~l~~~~~------~~~~~~~~~~R~~~Y~~~a~~~v------------ 139 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAERLRARDN--RPLLKGKME------HEEILELLFEREPLYEQAADIVV------------ 139 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHHHHHHHCT--SGGTCSHHH------HHHHHHHHHHHHHHHHHHSSEEE------------
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHhCCCC--CCCCCCCCh------HHHHHHHHHHHHHHHHhcCeEEE------------
Confidence 9998 59999999999999999988653 899874221 12345566699999998 66664
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q 023118 261 DVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 261 dt~~~t~~eva~~i~~~i~ 279 (287)
|+++.+|++++++|++.|+
T Consensus 140 ~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 140 DTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp ETSSCHHHHHHHHHHHHH-
T ss_pred eCCCCCHHHHHHHHHHHhC
Confidence 7888888999999999874
No 8
>PRK13946 shikimate kinase; Provisional
Probab=99.96 E-value=1.4e-28 Score=213.32 Aligned_cols=174 Identities=35% Similarity=0.529 Sum_probs=154.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118 92 LDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 92 l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ 171 (287)
+....|+|+|++||||||+++.||..++++|+|+|.++++.. |.++.++|...|++.||..|.++++++....+.|+++
T Consensus 8 ~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~-g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~ 86 (184)
T PRK13946 8 LGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAA-RMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLAT 86 (184)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 346789999999999999999999999999999999998887 9999999999999999999999999988777889999
Q ss_pred CCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEec
Q 023118 172 GGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL 250 (287)
Q Consensus 172 ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~ 250 (287)
|||++..+.++.+|+ .+++|||++|++.+.+|+..+ ..||++...+ + .+.+.++++.|.|.|..+|+++
T Consensus 87 ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r--~~rp~~~~~~--~----~~~i~~~~~~R~~~y~~~dl~i-- 156 (184)
T PRK13946 87 GGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRR--DTRPLLRTAD--P----KETLARLMEERYPVYAEADLTV-- 156 (184)
T ss_pred CCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCC--CCCCcCCCCC--h----HHHHHHHHHHHHHHHHhCCEEE--
Confidence 999999999999986 589999999999999999865 3578775322 2 2568889999999999888875
Q ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHhhhcC
Q 023118 251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR 286 (287)
Q Consensus 251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~~ 286 (287)
|+++++++++++.|+++++.+++++.
T Consensus 157 ----------~~~~~~~~~~~~~i~~~i~~~~~~~~ 182 (184)
T PRK13946 157 ----------ASRDVPKEVMADEVIEALAAYLEKEE 182 (184)
T ss_pred ----------ECCCCCHHHHHHHHHHHHHHhhcccc
Confidence 78899999999999999999988763
No 9
>PRK00625 shikimate kinase; Provisional
Probab=99.96 E-value=2e-28 Score=211.11 Aligned_cols=164 Identities=24% Similarity=0.339 Sum_probs=144.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC----chhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT----SVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ 171 (287)
.|+|+|++||||||+++.||..++++|+|.|.++++.. |. ++.++|...|++.||..|.++++++.. .+.|+++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~-g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~ 79 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY-HGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh-CCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence 58999999999999999999999999999999999987 65 999999999999999999999998875 5679999
Q ss_pred CCceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEe
Q 023118 172 GGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVS 249 (287)
Q Consensus 172 ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~ 249 (287)
|||++..++++..|+. |++|||++|++.+.+|+.. ||+..... + .+.+.++|++|.|.|++ ||++|+
T Consensus 80 GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~-----R~~~~~~~---~---~~~~~~ll~~R~~~Y~~~ad~~i~ 148 (173)
T PRK00625 80 GGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQK-----RGLPERLK---H---APSLEEILSQRIDRMRSIADYIFS 148 (173)
T ss_pred CCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhc-----CCCCcccC---c---HHHHHHHHHHHHHHHHHHCCEEEe
Confidence 9999999999999965 8999999999999999975 45443211 1 25688999999999998 999998
Q ss_pred ccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 250 LLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 250 ~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
+++ +++|+..++.++++.++..+
T Consensus 149 ~~~------~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 149 LDH------VAETSSESLMRACQSFCTLL 171 (173)
T ss_pred CCC------cccCCCCCHHHHHHHHHHHh
Confidence 776 45899999999999988765
No 10
>PRK13947 shikimate kinase; Provisional
Probab=99.95 E-value=3.7e-27 Score=200.51 Aligned_cols=163 Identities=37% Similarity=0.582 Sum_probs=143.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~ 175 (287)
.|+|+|++||||||+++.||..++++|+|+|.++++.. |.++.++|...|+..||..|..+++.+....+.|+++|+|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~ 81 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMT-GMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGV 81 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhc-CCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCC
Confidence 59999999999999999999999999999999998887 99999999999999999999999999887778899999999
Q ss_pred EeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccc
Q 023118 176 VVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLA 254 (287)
Q Consensus 176 v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a 254 (287)
++++.++..|++ +++|||++|++.+.+|+..+ ..||..... +. .+.+.+++++|.+.|+.||+.|
T Consensus 82 vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r--~~rp~~~~~--~~----~~~i~~~~~~r~~~y~~ad~~I------ 147 (171)
T PRK13947 82 VLNPENVVQLRKNGVVICLKARPEVILRRVGKK--KSRPLLMVG--DP----EERIKELLKEREPFYDFADYTI------ 147 (171)
T ss_pred cCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCC--CCCCCCCCC--Ch----HHHHHHHHHHHHHHHHhcCEEE------
Confidence 999988888875 89999999999999999865 347876532 12 3567888999999998888775
Q ss_pred cccccccCCCCCHHHHHHHHHH-HHH
Q 023118 255 ACIGLKDVLDITPTTIAMEVLV-QAQ 279 (287)
Q Consensus 255 ~~~~~idt~~~t~~eva~~i~~-~i~ 279 (287)
||++.++++++++|.+ ++.
T Consensus 148 ------dt~~~~~~~i~~~I~~~~~~ 167 (171)
T PRK13947 148 ------DTGDMTIDEVAEEIIKAYLK 167 (171)
T ss_pred ------ECCCCCHHHHHHHHHHHHHh
Confidence 8899999999999998 443
No 11
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.93 E-value=7.7e-25 Score=185.40 Aligned_cols=169 Identities=36% Similarity=0.612 Sum_probs=147.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecC
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATG 172 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~g 172 (287)
++..|.|+|++||||||+++.||..++..|+|.|.++++.. |.++.+++...|+..|+..+..+++++......|+++|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g 81 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARA-GKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTG 81 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 47899999999999999999999999999999999998887 99999998889999999999999999887666799999
Q ss_pred CceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEec
Q 023118 173 GGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSL 250 (287)
Q Consensus 173 gG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~ 250 (287)
+|.+..+.++..|+ .+++|||++|++.+.+|+..+. .||+..... ..+.+.+.+.+|.+.|.. +|++|
T Consensus 82 ~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~--~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~dl~i-- 151 (175)
T PRK00131 82 GGAVLREENRALLRERGTVVYLDASFEELLRRLRRDR--NRPLLQTND------PKEKLRDLYEERDPLYEEVADITV-- 151 (175)
T ss_pred CCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCC--CCCcCCCCC------hHHHHHHHHHHHHHHHHhhcCeEE--
Confidence 99999988898884 5899999999999999998754 377665211 125678899999999987 88775
Q ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
||++++|+++++.|++.++.+-
T Consensus 152 ----------dt~~~~~~e~~~~I~~~v~~~~ 173 (175)
T PRK00131 152 ----------ETDGRSPEEVVNEILEKLEAAW 173 (175)
T ss_pred ----------eCCCCCHHHHHHHHHHHHHhhc
Confidence 8999999999999999998653
No 12
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.93 E-value=5.1e-25 Score=205.88 Aligned_cols=175 Identities=30% Similarity=0.471 Sum_probs=151.9
Q ss_pred eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhc-C
Q 023118 86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSL-V 164 (287)
Q Consensus 86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~-~ 164 (287)
-.+.+ +.+|+|+|++||||||+++.|+..++++|+|.|..+++.. |.++.+++...|++.||..|.+.+.++.. .
T Consensus 128 ~~~~~---~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~-G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~ 203 (309)
T PRK08154 128 RRAAR---RRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREA-GLSVSEIFALYGQEGYRRLERRALERLIAEH 203 (309)
T ss_pred hhccC---CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHHHhhC
Confidence 34556 8999999999999999999999999999999999999987 99999999999999999999999998754 4
Q ss_pred CCeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023118 165 PQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN 243 (287)
Q Consensus 165 ~~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ 243 (287)
...|+++|||++..+.++..+. .+++|||++|++.+.+|+..++ +.||+.... ++ .+.+.++++.|.|+|+.
T Consensus 204 ~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~-~~rp~~~~~--~~----~e~i~~~~~~R~~~y~~ 276 (309)
T PRK08154 204 EEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQG-DLRPMADNR--EA----MEDLRRILASREPLYAR 276 (309)
T ss_pred CCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCC-CCCCCCCCC--Ch----HHHHHHHHHHHHHHHHh
Confidence 5689999999998888887775 5899999999999999998764 468876432 22 36688999999999998
Q ss_pred CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 244 ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 244 ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+|++| |++.++++++++.|+..++.++.
T Consensus 277 ad~~I------------~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 277 ADAVV------------DTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred CCEEE------------ECCCCCHHHHHHHHHHHHHHHhc
Confidence 88875 79999999999999999987754
No 13
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.93 E-value=1.4e-24 Score=185.09 Aligned_cols=165 Identities=37% Similarity=0.583 Sum_probs=140.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG 174 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG 174 (287)
..|+|+|++||||||+++.||..++++|+|.|.+++... |+++.+++...|+..||..|.+.++.+.. ...|+++|||
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~-g~~~~~~~~~~g~~~~~~~e~~~~~~~~~-~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTS-NMTVAEIVEREGWAGFRARESAALEAVTA-PSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHh-CCCHHHHHHHHCHHHHHHHHHHHHHHhcC-CCeEEECCCC
Confidence 579999999999999999999999999999999998887 99999999999999999999999977653 5679999999
Q ss_pred eEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118 175 AVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL 251 (287)
Q Consensus 175 ~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~ 251 (287)
+|+++.++.+|++ |++|||++|++.+.+|+..+.. ..||.+...+ + .+.+.+.+++|.+.|.. ++++|
T Consensus 81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~---~---~~~~~~~~~~r~~~y~~~a~~~I--- 151 (171)
T PRK03731 81 IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKP---I---SEEVAEVLAEREALYREVAHHII--- 151 (171)
T ss_pred ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCC---h---HHHHHHHHHHHHHHHHHhCCEEE---
Confidence 9999999999874 8999999999999999987532 3577664321 1 25578889999999987 66554
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 252 NLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
|++ .++++|+.+|+..+.+
T Consensus 152 ---------d~~-~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 152 ---------DAT-QPPSQVVSEILSALAQ 170 (171)
T ss_pred ---------cCC-CCHHHHHHHHHHHHhc
Confidence 776 6999999999988753
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.92 E-value=2e-24 Score=212.94 Aligned_cols=157 Identities=36% Similarity=0.563 Sum_probs=139.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~ 175 (287)
+|+|+|++||||||+++.||..++++|+|+|.++++.. |+++.++|...|++.||+.|.++++++....+.|++||||+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~-g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggv 80 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERRE-GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGV 80 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHc-CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCcc
Confidence 58999999999999999999999999999999999987 99999999999999999999999999876677899999999
Q ss_pred EeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecccccc
Q 023118 176 VVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAA 255 (287)
Q Consensus 176 v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~ 255 (287)
|.++.++++|+++.+|||++|++++.+|+..+ .||++... .+++.++|++|.|.|+++ +.
T Consensus 81 v~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~---~RPLl~~~--------~e~l~~L~~~R~~lY~~~-~~-------- 140 (488)
T PRK13951 81 VIDPENRELLKKEKTLFLYAPPEVLMERVTTE---NRPLLREG--------KERIREIWERRKQFYTEF-RG-------- 140 (488)
T ss_pred ccChHHHHHHhcCeEEEEECCHHHHHHHhccC---CCCCcccc--------HHHHHHHHHHHHHHHhcc-cE--------
Confidence 99999999998877999999999999999643 58987531 146788999999999875 22
Q ss_pred ccccccCCCCCHHHHHHHHHHH
Q 023118 256 CIGLKDVLDITPTTIAMEVLVQ 277 (287)
Q Consensus 256 ~~~~idt~~~t~~eva~~i~~~ 277 (287)
||++++++++++.+|+-.
T Consensus 141 ----IDt~~~s~~e~~~~iv~~ 158 (488)
T PRK13951 141 ----IDTSKLNEWETTALVVLE 158 (488)
T ss_pred ----EECCCCCHHHHHHHHHHH
Confidence 589999999888877543
No 15
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.91 E-value=1.9e-23 Score=174.02 Aligned_cols=151 Identities=41% Similarity=0.645 Sum_probs=129.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~ 175 (287)
.|+|+|++||||||+++.|+..++++|+|.|.+++... |.++.+++...|++.|+..+.+++..+....+.|+++|+|.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRA-GMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHc-CCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 38899999999999999999999999999999998887 88899988889999999999998888887778899999999
Q ss_pred EeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecccc
Q 023118 176 VVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNL 253 (287)
Q Consensus 176 v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~ 253 (287)
+.++.++..+. .+++|||++|++.+.+|+..++ .||.+...+. +.+.+++++|.+.|.+ +|+++
T Consensus 80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~~~~~-------~~~~~~~~~r~~~Y~~~ad~~i----- 145 (154)
T cd00464 80 VLREENRRLLLENGIVVWLDASPEELLERLARDK--TRPLLQDEDP-------ERLRELLEEREPLYREVADLTI----- 145 (154)
T ss_pred cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCC--CCCCCCCCCH-------HHHHHHHHHHHHHHHHhCcEEE-----
Confidence 88876655544 5899999999999999998764 5887764321 4678999999999998 89887
Q ss_pred ccccccccCCCCCHH
Q 023118 254 AACIGLKDVLDITPT 268 (287)
Q Consensus 254 a~~~~~idt~~~t~~ 268 (287)
||+++|++
T Consensus 146 -------~~~~~~~~ 153 (154)
T cd00464 146 -------DTDELSPE 153 (154)
T ss_pred -------ECCCCCCC
Confidence 67777775
No 16
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.83 E-value=1.4e-19 Score=152.63 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=121.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhhhHHHH-HHHhhcCCCeEEecC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFREYESKA-LQKLSLVPQQVVATG 172 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~~e~~~-l~~l~~~~~~via~g 172 (287)
.|+|.||+||||||+++.||..+|++|+++|.++.++. .|+++.++-+....+..-+.+.+- ..+++. ...+|..|
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVleg 80 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVLEG 80 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEEhh
Confidence 68999999999999999999999999999999988765 699998874322222222223332 334455 45566555
Q ss_pred CceEeccccHHhh-cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEec
Q 023118 173 GGAVVRPLNWRFM-RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSL 250 (287)
Q Consensus 173 gG~v~~~~~~~~L-~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~ 250 (287)
..+ .|-.. ...+.|||++|++++++|++.|++ ..+.+++.++.+.-......|.+ +.+ ++
T Consensus 81 rLA-----~Wi~k~~adlkI~L~Apl~vRa~Ria~REg-----------i~~~~a~~~~~~RE~se~kRY~~~YgI--Di 142 (179)
T COG1102 81 RLA-----GWIVREYADLKIWLKAPLEVRAERIAKREG-----------IDVDEALAETVEREESEKKRYKKIYGI--DI 142 (179)
T ss_pred hhH-----HHHhccccceEEEEeCcHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHHHHHHHHHHhCC--CC
Confidence 422 23111 136889999999999999998653 23334444444433344467777 555 55
Q ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHhhhc
Q 023118 251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285 (287)
Q Consensus 251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~ 285 (287)
+|++.++.+|||+.++|++|+..+..+++.....+
T Consensus 143 dDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~~ 177 (179)
T COG1102 143 DDLSIYDLVINTSKWDPEEVFLILLDAIDALSIKE 177 (179)
T ss_pred ccceeeEEEEecccCCHHHHHHHHHHHHHhhcccc
Confidence 78999999999999999999999999998876544
No 17
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.78 E-value=4.1e-18 Score=168.37 Aligned_cols=182 Identities=18% Similarity=0.151 Sum_probs=131.4
Q ss_pred eEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhhh--hh
Q 023118 71 FCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQI--FK 143 (287)
Q Consensus 71 l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~~--~~ 143 (287)
+...+|+..+++|+.+.. + +..|+|.||+||||||+++.|+..+++.|+|+|.++... ..|.+..+. +.
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~---~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~ 340 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-R---QPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALA 340 (512)
T ss_pred EEEEeCCeEEEeeeEecc-C---CcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHH
Confidence 445778899999999977 5 899999999999999999999999999999999886553 134443221 00
Q ss_pred ---------h-----h----------------------------chhhhhhhHHHHHHHhhcCCCeEEecCC--ceEecc
Q 023118 144 ---------E-----S----------------------------GEAYFREYESKALQKLSLVPQQVVATGG--GAVVRP 179 (287)
Q Consensus 144 ---------~-----~----------------------------g~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~ 179 (287)
. . ..+..|..-....++++... .+|..|. |++..|
T Consensus 341 ~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~-~iV~eGRDigtvV~P 419 (512)
T PRK13477 341 ELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKG-GLVAEGRDIGTHVFP 419 (512)
T ss_pred HHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcC-CEEEEcccceeEEcC
Confidence 0 0 11223333333444444433 4667776 666666
Q ss_pred ccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEec
Q 023118 180 LNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSL 250 (287)
Q Consensus 180 ~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~ 250 (287)
.. .+.|||++|++.+++|..... ..||++.. .+ +.+.+++.+|+ |+|..+|..+
T Consensus 420 ~A------dlKIfL~As~evRa~RR~~~l-~~Rpll~~----~~----e~i~~~i~eRd~~D~~R~i~PLy~a~dai~-- 482 (512)
T PRK13477 420 DA------ELKIFLTASVEERARRRALDL-QAQGFPVI----DL----EQLEAQIAERDRLDSTREIAPLRKADDAIE-- 482 (512)
T ss_pred CC------CEEEEEECCHHHHHHHHHhhh-hhCCCccC----CH----HHHHHHHHHHHhhhcccccccccccCCeEE--
Confidence 54 489999999999999976532 35777531 12 66788899999 9998855444
Q ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 251 LNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
|||+++++++|+++|++.+++.+.
T Consensus 483 ---------IDTs~lsieeVv~~Il~~i~~~~~ 506 (512)
T PRK13477 483 ---------LITDGLSIEEVVDKIIDLYRDRIP 506 (512)
T ss_pred ---------EECCCCCHHHHHHHHHHHHHHhCc
Confidence 699999999999999999987543
No 18
>PRK09169 hypothetical protein; Validated
Probab=99.77 E-value=3.4e-18 Score=185.76 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=130.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118 92 LDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 92 l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ 171 (287)
|.+..|+|+|++|+||||+++.|++.+++.|+|+|..|++.. |++|.++|..+| .||+.|...++++.. ...|+++
T Consensus 2108 L~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~-GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLST 2183 (2316)
T PRK09169 2108 LGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKI-GKKIARIQALRG--LSPEQAAARVRDALR-WEVVLPA 2183 (2316)
T ss_pred HhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHh-CCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEeC
Confidence 447899999999999999999999999999999999999998 999999999999 999999999999886 6789999
Q ss_pred CCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcc-hhhHHHHHHHHHHHHHHhhhhh-CCeEE
Q 023118 172 GGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSAD-SYTKAFTALSALSKERSEAYAN-ADATV 248 (287)
Q Consensus 172 ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~-~~~~~~~~l~~l~~~R~~~Y~~-ad~~v 248 (287)
|||++..+.++..|. +|++|||..+++.+.+|+... .+||++...+.+ +..-.-.+..+++++|.++|++ +|+.|
T Consensus 2184 GGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g--~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvADl~V 2261 (2316)
T PRK09169 2184 EGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYAG--LNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQDLEV 2261 (2316)
T ss_pred CCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhccC--CCCccccCCCCccchhccHHHHHHHHHHhHHHHHHhcCccc
Confidence 999999999999997 599999999999999999753 569998754321 0000113456688899999987 89887
No 19
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.76 E-value=1e-17 Score=147.57 Aligned_cols=169 Identities=27% Similarity=0.321 Sum_probs=106.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhh-------------hh------hhchhh-
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQI-------------FK------ESGEAY- 149 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~-------------~~------~~g~~~- 149 (287)
-.|+|.||+||||||+++.||..|++.|+|+|.++.... .|.++.+. |. ..|++.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs 84 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVS 84 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhh
Confidence 579999999999999999999999999999998854421 34433331 11 122232
Q ss_pred --hhhhHH------------------HHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhc
Q 023118 150 --FREYES------------------KALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 150 --fr~~e~------------------~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
.|..+. +..++++.....+|..|. |+|..|.. .+.|||++++|++++|=..
T Consensus 85 ~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTvV~PdA------~lKiFLtAS~e~RA~RR~~- 157 (222)
T COG0283 85 EEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTVVFPDA------ELKIFLTASPEERAERRYK- 157 (222)
T ss_pred hhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcceECCCC------CeEEEEeCCHHHHHHHHHH-
Confidence 232222 123333443344666665 66666665 3889999999999999322
Q ss_pred CCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 208 GTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 208 ~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
.+......+. +++|.+-+.+|+..-.. +...+ -.|.+..+|||++||.+||+++|++.+++.+
T Consensus 158 -----q~~~~g~~~~----~e~ll~eI~~RD~~D~~R~~~PL---k~A~DA~~iDTs~msieeVv~~il~~~~~~~ 221 (222)
T COG0283 158 -----QLQAKGFSEV----FEELLAEIKERDERDSNRAVAPL---KPAEDALLLDTSSLSIEEVVEKILELIRQKL 221 (222)
T ss_pred -----HHHhccCcch----HHHHHHHHHHhhhccccCcCCCC---cCCCCeEEEECCCCcHHHHHHHHHHHHHHhh
Confidence 2222211111 36677777888843332 11111 0133333499999999999999999998543
No 20
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.74 E-value=4.1e-18 Score=147.72 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=108.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHH--------------
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQ-------------- 159 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~-------------- 159 (287)
|++++|+||||||||||+++|++.+++.|++.+..+.... .....+.+...+++.+|..+...+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPA-SAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCcc-chhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 7899999999999999999999999999988887764332 3334455555666666655443322
Q ss_pred ---HhhcCCCeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 160 ---KLSLVPQQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 160 ---~l~~~~~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
........|++.|++.+. ....+.+. .+.+|||++|++.+.+|+..++ +|.. +.+.+.+
T Consensus 81 ~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~---~~~~------------~~i~~rl- 143 (186)
T PRK10078 81 EIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRG---RENA------------SEINARL- 143 (186)
T ss_pred HHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC---CCCH------------HHHHHHH-
Confidence 111223457776665443 23334443 3678999999999999998653 3211 2244444
Q ss_pred HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
.|.+.|..+|..+ || ++.++++++++|.+.+..-.+.
T Consensus 144 ~r~~~~~~ad~~v-----------i~-~~~s~ee~~~~i~~~l~~~~~~ 180 (186)
T PRK10078 144 ARAARYQPQDCHT-----------LN-NDGSLRQSVDTLLTLLHLSQKE 180 (186)
T ss_pred HHhhhhccCCEEE-----------Ee-CCCCHHHHHHHHHHHHhhcCcc
Confidence 4667787777554 46 3469999999999988765443
No 21
>PRK04182 cytidylate kinase; Provisional
Probab=99.72 E-value=1e-16 Score=136.52 Aligned_cols=160 Identities=22% Similarity=0.313 Sum_probs=103.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhh---hhhHHHHHHHhhcCCCeEEe
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYF---REYESKALQKLSLVPQQVVA 170 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~f---r~~e~~~l~~l~~~~~~via 170 (287)
+|+|+|++||||||+++.||..++++|+|+|+++.... .|.++.+++. .++..+ +..+. .+..++.....+|.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~Vi 79 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEIDR-RQLEIAEKEDNVVL 79 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHHH-HHHHHHhcCCCEEE
Confidence 68999999999999999999999999999887654432 3777777643 333332 22222 23334412223333
Q ss_pred cCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh-------
Q 023118 171 TGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY------- 241 (287)
Q Consensus 171 ~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y------- 241 (287)
.|. +.+..+ ..+++|||++|++.+.+|+..+. .+|... +...+.+....|...|
T Consensus 80 ~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~--~~~~~~---------a~~~~~~~d~~~~~~~~~~~~~~ 142 (180)
T PRK04182 80 EGRLAGWMAKD------YADLKIWLKAPLEVRAERIAERE--GISVEE---------ALEETIEREESEAKRYKEYYGID 142 (180)
T ss_pred EEeecceEecC------CCCEEEEEECCHHHHHHHHHhcc--CCCHHH---------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 442 222211 03689999999999999998764 244321 2233333333343333
Q ss_pred ----hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhcC
Q 023118 242 ----ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR 286 (287)
Q Consensus 242 ----~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~~ 286 (287)
..||++ |||+.++++++++.|++.+..+.++.+
T Consensus 143 ~~~~~~~d~~------------idt~~~~~~~~~~~I~~~~~~~~~~~~ 179 (180)
T PRK04182 143 IDDLSIYDLV------------INTSRWDPEGVFDIILTAIDKLLKAKD 179 (180)
T ss_pred ccccccccEE------------EECCCCCHHHHHHHHHHHHHHHhcccC
Confidence 345544 589999999999999999998776543
No 22
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.9e-16 Score=131.85 Aligned_cols=150 Identities=21% Similarity=0.323 Sum_probs=104.4
Q ss_pred EcCCCCCHHHHHHHHHhccCCccccchhH-----HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118 100 VGMMGSGKTTVGEILSDALDYTFADSDKY-----VEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG 174 (287)
Q Consensus 100 vG~~GsGKSTl~k~La~~l~~~fid~d~~-----ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG 174 (287)
+|.+||||||++..||..+++.|+|+|++ |++|..|.++++-- .+++..................|++|+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdD---R~pWL~~l~~~~~~~~~~~~~~vi~CSA- 76 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDD---RWPWLEALGDAAASLAQKNKHVVIACSA- 76 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcch---hhHHHHHHHHHHHHhhcCCCceEEecHH-
Confidence 69999999999999999999999999998 88898999998752 2333222222222222222235777775
Q ss_pred eEeccccHHhhcC---C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEec
Q 023118 175 AVVRPLNWRFMRQ---G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL 250 (287)
Q Consensus 175 ~v~~~~~~~~L~~---g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~ 250 (287)
+....+..|+. + .+|||+.+++.+.+|+.+|.+|++|.-.- . .+|..| ..|--.. |++.
T Consensus 77 --LKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll------~---SQfa~L---E~P~~de-~vi~-- 139 (161)
T COG3265 77 --LKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLL------D---SQFATL---EEPGADE-DVLT-- 139 (161)
T ss_pred --HHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHH------H---HHHHHh---cCCCCCC-CEEE--
Confidence 34566778875 2 47999999999999999999999884321 1 223332 2233222 4433
Q ss_pred cccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 251 LNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 251 ~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
||.+. ++++++++++..+..
T Consensus 140 ---------idi~~-~~e~vv~~~~~~l~~ 159 (161)
T COG3265 140 ---------IDIDQ-PPEEVVAQALAWLKE 159 (161)
T ss_pred ---------eeCCC-CHHHHHHHHHHHHhc
Confidence 67764 899999999998865
No 23
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.2e-16 Score=132.47 Aligned_cols=157 Identities=18% Similarity=0.297 Sum_probs=115.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhH-----HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEE
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY-----VEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVV 169 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~-----ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi 169 (287)
..|+++|++||||||++++|+..|++.|+|+|++ +++|..|.++.+- +.+++......+..++++.....|+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~---DR~pWL~~i~~~~~~~l~~~q~vVl 89 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDD---DRWPWLKKIAVELRKALASGQGVVL 89 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcc---cccHHHHHHHHHHHHHhhcCCeEEE
Confidence 4799999999999999999999999999999998 8888889998765 4566666666677777777677788
Q ss_pred ecCCceEeccccHHhhcC----C----------cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 170 ATGGGAVVRPLNWRFMRQ----G----------ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 170 a~ggG~v~~~~~~~~L~~----g----------~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
+|+. +....+.+|+. | .+|||.++.|++.+|+..|.+|++|.-. .+ .+|..|
T Consensus 90 ACSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~l------le---SQf~~L-- 155 (191)
T KOG3354|consen 90 ACSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADL------LE---SQFATL-- 155 (191)
T ss_pred EhHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHH------HH---HHHHhc--
Confidence 8875 23344555542 1 4799999999999999999999988532 11 122222
Q ss_pred HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.-|--.+.|++- ||+...+++++++.|.+.+..
T Consensus 156 -E~p~~~e~div~-----------isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 156 -EAPDADEEDIVT-----------ISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred -cCCCCCccceEE-----------EeeccCCHHHHHHHHHHHHHh
Confidence 123222333332 566668999999999987754
No 24
>PRK03839 putative kinase; Provisional
Probab=99.67 E-value=9.1e-16 Score=131.94 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=101.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~ 175 (287)
.|+|+|+|||||||+++.||..++++|+|.|+++.+. .+.+.+...++..|+..+..+.+... ...++.+|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~vIidG~-- 73 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK----GIGEEKDDEMEIDFDKLAYFIEEEFK--EKNVVLDGH-- 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc----CCcccCChhhhcCHHHHHHHHHHhcc--CCCEEEEec--
Confidence 5899999999999999999999999999999998543 34455555677778887777665432 222455542
Q ss_pred EeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccc
Q 023118 176 VVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLA 254 (287)
Q Consensus 176 v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a 254 (287)
....+..+++|||+++++.+.+|+..++. .+|.... . ...++.+++. ...|.. ..+.+
T Consensus 74 -----~~~l~~~~~vi~L~~~~~~~~~Rl~~R~~-~~~~~~~----~---~~~~~~~~~~--~~~~~~r~~~~~------ 132 (180)
T PRK03839 74 -----LSHLLPVDYVIVLRAHPKIIKERLKERGY-SKKKILE----N---VEAELVDVCL--CEALEEKEKVIE------ 132 (180)
T ss_pred -----cccccCCCEEEEEECCHHHHHHHHHHcCC-CHHHHHH----H---HHHHHHHHHH--HHHHHhcCCEEE------
Confidence 11223348899999999999999987642 2222110 0 0112222111 122322 22222
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 255 ACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 255 ~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
||+++.++++++.+|++.++...
T Consensus 133 -----Id~~~~s~eev~~~I~~~l~~~~ 155 (180)
T PRK03839 133 -----VDTTGKTPEEVVEEILELIKSGK 155 (180)
T ss_pred -----EECCCCCHHHHHHHHHHHHhcCC
Confidence 68988899999999999987653
No 25
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.64 E-value=2.8e-16 Score=157.77 Aligned_cols=151 Identities=21% Similarity=0.344 Sum_probs=112.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCC------ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHH-HHHhhcCC
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDY------TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA-LQKLSLVP 165 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~------~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~-l~~l~~~~ 165 (287)
.|..|+|+|+|||||||+++.|+..++. .|+|+|.+...+. |+..|+..+.+. .+.++...
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~------------ge~~f~~~er~~~~~~l~~~a 458 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS------------SELGFSKEDRDLNILRIGFVA 458 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc------------CCCCCCHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999996 8999997753222 233455544442 22233333
Q ss_pred CeEEecCCceEecc---------ccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHH
Q 023118 166 QQVVATGGGAVVRP---------LNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSAL 233 (287)
Q Consensus 166 ~~via~ggG~v~~~---------~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l 233 (287)
..++.+|+++++++ .+++.+++ | ++|||++|++.+.+|+ .+|++.... .+.+.++
T Consensus 459 ~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~------rr~Ll~~~~-------~~~i~~l 525 (568)
T PRK05537 459 SEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD------RKGLYAKAR-------EGKIKGF 525 (568)
T ss_pred HHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhc------cccccccch-------hchhhcc
Confidence 45677888888773 56777765 5 5799999999999995 256664321 1457888
Q ss_pred HHHHHhhhh-h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 234 SKERSEAYA-N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 234 ~~~R~~~Y~-~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
+..|++.|. . ||++| ||++.++++++++|+..++.
T Consensus 526 ~~~R~~yy~p~~Adl~I------------Dt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 526 TGISDPYEPPANPELVI------------DTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred ccccccccCCCCCcEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence 899999996 3 78765 88999999999999998874
No 26
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.61 E-value=5.7e-16 Score=132.74 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=102.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHH-----HHHHhhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK-----ALQKLSL 163 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~-----~l~~l~~ 163 (287)
|..|+|+|++||||||+++.|++.+. ..|+|+|.+-+ .+ ...|.+.+...+.. +.+.+..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~-~~---------~~~~~~~~~~~~~~~~~~~l~~~l~~ 76 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE-IL---------GHYGYDKQSRIEMALKRAKLAKFLAD 76 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh-hc---------CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999886 55677766542 12 11222222222221 1222333
Q ss_pred CCCeEEecCCceE--eccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118 164 VPQQVVATGGGAV--VRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY 241 (287)
Q Consensus 164 ~~~~via~ggG~v--~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y 241 (287)
....||++|++.+ ....++..+...++|||++|++++.+|+. +|++... ..+++.+++..|.|.|
T Consensus 77 ~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~------~~l~~~~-------~~~~~~~~~~~~~~~~ 143 (176)
T PRK05541 77 QGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQ------KGLYTKA-------LKGEIKNVVGVDIPFD 143 (176)
T ss_pred CCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhch------hhHHHHH-------HcCcccccccCCCccc
Confidence 4457888877654 23334444444678999999999999963 3433210 0135677888999999
Q ss_pred hh-CCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHHHh
Q 023118 242 AN-ADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 242 ~~-ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~~l 282 (287)
+. ||++| |+++ .++++++++|+..++..+
T Consensus 144 ~~~Ad~vI------------~~~~~~~~~~~v~~i~~~l~~~~ 174 (176)
T PRK05541 144 EPKADLVI------------DNSCRTSLDEKVDLILNKLKLRL 174 (176)
T ss_pred CCCCCEEE------------eCCCCCCHHHHHHHHHHHHHHhc
Confidence 77 77775 6766 599999999999887654
No 27
>PRK13975 thymidylate kinase; Provisional
Probab=99.61 E-value=3.5e-15 Score=129.42 Aligned_cols=164 Identities=16% Similarity=0.278 Sum_probs=102.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH----HHHhC-----CCchhhhhhhhchhhhhhhHHHHHHHhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV----EKLMG-----GTSVAQIFKESGEAYFREYESKALQKLS 162 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i----e~~~~-----G~~i~~~~~~~g~~~fr~~e~~~l~~l~ 162 (287)
|..|+|.|++||||||+++.|+..++ +.|.++|..+ .+... +.++..+|...+...|+..+....+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~--- 78 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK--- 78 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 57899999999999999999999998 4555665443 33222 2233445666666666654432221
Q ss_pred cCCCeEEe-----------cCCceEec---cccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHH
Q 023118 163 LVPQQVVA-----------TGGGAVVR---PLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFT 228 (287)
Q Consensus 163 ~~~~~via-----------~ggG~v~~---~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~ 228 (287)
..|+. +++|.... ..+...+..+++|||++|++.+.+|+..++ +|.... ..| ++
T Consensus 79 ---~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~---~~~~~~---~~~---~~ 146 (196)
T PRK13975 79 ---RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRD---KEIFEK---KEF---LK 146 (196)
T ss_pred ---CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccC---ccccch---HHH---HH
Confidence 23333 23332211 011111234789999999999999998763 554431 122 34
Q ss_pred HHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 229 ALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 229 ~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
++.+.|.++.. .|......+ ||+++.++++++++|.+.+...+.
T Consensus 147 ~~~~~y~~~~~~~~~~~~~~~~~-----------Id~~~~~~eev~~~I~~~i~~~~~ 193 (196)
T PRK13975 147 KVQEKYLELANNEKFMPKYGFIV-----------IDTTNKSIEEVFNEILNKIKDKIP 193 (196)
T ss_pred HHHHHHHHHHhhcccCCcCCEEE-----------EECCCCCHHHHHHHHHHHHHHhCC
Confidence 55666666554 222222332 689889999999999999987654
No 28
>PRK14532 adenylate kinase; Provisional
Probab=99.60 E-value=3.1e-14 Score=123.10 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=108.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVA 170 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via 170 (287)
.|+|+||+||||||+++.||..+++.++++|+++++.. . |..+.+++. .|...+...-..++.+... .+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~----~~~ 76 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLP----EAE 76 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHh----CcC
Confidence 58999999999999999999999999999999988753 1 334455544 5666655444444443332 234
Q ss_pred cCCceEecc--cc------H-Hhhc-CC----cEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 171 TGGGAVVRP--LN------W-RFMR-QG----ITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 171 ~ggG~v~~~--~~------~-~~L~-~g----~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
+|+|.|++. .+ + +.+. .| .+|||++|++++.+|+..|.. ..||... .+. ...++.+.++
T Consensus 77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~---~~~---~~~Rl~~~~~ 150 (188)
T PRK14532 77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDN---PEV---FVTRLDAYNA 150 (188)
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCC---HHH---HHHHHHHHHH
Confidence 677777763 21 1 1232 23 689999999999999987632 2344221 122 2456777777
Q ss_pred HHH---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 236 ERS---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 236 ~R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
.+. +.|+..+..+. ||.+ .++++|.++|...+.
T Consensus 151 ~~~~i~~~y~~~~~~~~----------id~~-~~~eev~~~I~~~l~ 186 (188)
T PRK14532 151 QTAPLLPYYAGQGKLTE----------VDGM-GSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHHHh
Confidence 775 56776554443 4544 599999999998875
No 29
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.58 E-value=2.7e-14 Score=120.60 Aligned_cols=152 Identities=15% Similarity=0.237 Sum_probs=98.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ 171 (287)
|+|+||+||||||+++.|++.++..|+|+|.+. +.+..|....+ ...+.+++.........+......|+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~Vi~~ 77 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLND---DDRWPWLQNLNDASTAAAAKNKVGIITC 77 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCCh---hhHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 579999999999999999999999999999973 22333443322 2344555555544444444444457777
Q ss_pred CCceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH-HHHhhhhhCCe
Q 023118 172 GGGAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK-ERSEAYANADA 246 (287)
Q Consensus 172 ggG~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~-~R~~~Y~~ad~ 246 (287)
+. .++..+..++. + .+|||++|++.+.+|+..|+.+..| . +.+...+. .+.|.+..++.
T Consensus 78 t~---~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~------~-------~~i~~~~~~~~~~~~~e~~~ 141 (163)
T TIGR01313 78 SA---LKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMK------A-------DMLESQFAALEEPLADETDV 141 (163)
T ss_pred cc---cHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCC------H-------HHHHHHHHHhCCCCCCCCce
Confidence 52 34555555543 2 5699999999999999876422111 0 22333333 23444555555
Q ss_pred EEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 247 TVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 247 ~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
.+ ||++. ++++++++|.+.+-
T Consensus 142 ~~-----------id~~~-~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 142 LR-----------VDIDQ-PLEGVEEDCIAVVL 162 (163)
T ss_pred EE-----------EECCC-CHHHHHHHHHHHHh
Confidence 54 78886 79999999988763
No 30
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.58 E-value=2e-15 Score=137.40 Aligned_cols=93 Identities=26% Similarity=0.309 Sum_probs=77.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKE 144 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~ 144 (287)
+++++|+++.|+++.+++|+||++++ |++++|+||||||||||+|.|++.+.| +.|.+. .+|.++.++
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~---G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~---l~g~~i~~~--- 69 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPK---GEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVL---LDGKDIASL--- 69 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecC---CcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEE---ECCCchhhc---
Confidence 58999999999999999999999999 999999999999999999999999999 566665 467777655
Q ss_pred hchhhhhhhHHHHHHHhhcCCCeEEecCCceEe
Q 023118 145 SGEAYFREYESKALQKLSLVPQQVVATGGGAVV 177 (287)
Q Consensus 145 ~g~~~fr~~e~~~l~~l~~~~~~via~ggG~v~ 177 (287)
...+..+.++..+|.-....+-+|.
T Consensus 70 --------~~kelAk~ia~vpQ~~~~~~~~tV~ 94 (258)
T COG1120 70 --------SPKELAKKLAYVPQSPSAPFGLTVY 94 (258)
T ss_pred --------CHHHHhhhEEEeccCCCCCCCcEEe
Confidence 4566778888877765455555554
No 31
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.57 E-value=1.6e-13 Score=115.95 Aligned_cols=162 Identities=20% Similarity=0.280 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhc-hhhhhhhHHHHHHHhh-cCCCeEEec
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESG-EAYFREYESKALQKLS-LVPQQVVAT 171 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g-~~~fr~~e~~~l~~l~-~~~~~via~ 171 (287)
+|+|.|++||||||+++.|+..+++++++.|.++.... .|.++..+..... .+.....-...+.+++ .... +|..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~Vi~ 80 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN-VVLE 80 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC-EEEE
Confidence 68999999999999999999999999999988765543 2555544321111 0111111112233333 3233 3334
Q ss_pred CCceEeccccHHhhc--CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEE
Q 023118 172 GGGAVVRPLNWRFMR--QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATV 248 (287)
Q Consensus 172 ggG~v~~~~~~~~L~--~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v 248 (287)
|.+. .+ .+. ..++|||++|++.+.+|+..+++ . +..++..++.+....|...|.. ...
T Consensus 81 g~~~-----~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~--~---------s~~~a~~~~~~~d~~~~~~~~~~~~~-- 141 (171)
T TIGR02173 81 SRLA-----GW-IVREYADVKIWLKAPLEVRARRIAKREG--K---------SLTVARSETIEREESEKRRYLKFYGI-- 141 (171)
T ss_pred eccc-----ce-eecCCcCEEEEEECCHHHHHHHHHHccC--C---------CHHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 4321 11 111 24789999999999999987542 1 1223445566665666666654 222
Q ss_pred eccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 249 SLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 249 ~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
+..|...++.+|||+.+++++ ++.|..++
T Consensus 142 ~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 142 DIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred CccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 123444556678999999999 99998875
No 32
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.56 E-value=3.3e-14 Score=145.45 Aligned_cols=166 Identities=23% Similarity=0.206 Sum_probs=109.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhh--hhh----------------h-----
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQI--FKE----------------S----- 145 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~--~~~----------------~----- 145 (287)
...|+|.||+||||||+++.||..++++|+|+|.++.... .|.++.+. +.. +
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT 521 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence 4589999999999999999999999999999999865541 45554331 000 0
Q ss_pred ----------------chhhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhc
Q 023118 146 ----------------GEAYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 146 ----------------g~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
..+..|+.-....++++.. ..+|..|. |+|..|.+ .+.|||+++++++++|-...
T Consensus 522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~-~~~v~eGRdigtvv~p~a------~~kifl~a~~~~Ra~Rr~~~ 594 (661)
T PRK11860 522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRL-PGLVADGRDMGTVIFPDA------ALKVFLTASAEARAERRYKQ 594 (661)
T ss_pred hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhC-CCEEEECCCCccEECCCC------CeEEEEECChhHHHHHHHHH
Confidence 1223344434445555543 34777775 77777764 48999999999999996531
Q ss_pred CCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 208 GTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 208 ~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+........| +++.+.+.+|+..-.+ +.+. .+.+..+|||++++++||+++|++.+++.
T Consensus 595 ------~~~~~~~~~~----~~~~~~~~~Rd~~d~~R~~~pl~-----~~~da~~idts~~~~~~v~~~i~~~i~~~ 656 (661)
T PRK11860 595 ------LISKGISANI----ADLLADLEARDARDTQRSVAPLK-----PAQDALLLDNSDLTIEQAVAQVLDWWQER 656 (661)
T ss_pred ------HHhCCCCCCH----HHHHHHHHHHhHHhhcCCCCCCc-----cCCCEEEEECCCCCHHHHHHHHHHHHHhh
Confidence 1111111234 4455556677743332 2222 23445569999999999999999999764
No 33
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.54 E-value=1.7e-14 Score=126.31 Aligned_cols=157 Identities=20% Similarity=0.248 Sum_probs=95.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
|..|+|+|++||||||+++.|++.+ +..++|+|.+......+.. +..+.....++.. .++...+......|
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~---~~~~~~~~~~~~l-~~~a~~~~~~G~~V 99 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLG---FSDADRKENIRRV-GEVAKLMVDAGLVV 99 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCC---cCcccHHHHHHHH-HHHHHHHhhCCCEE
Confidence 8999999999999999999999987 3467888877533221111 1011111222221 11233333333344
Q ss_pred EecCCce--EeccccHHhhcC-Cc-EEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh--
Q 023118 169 VATGGGA--VVRPLNWRFMRQ-GI-TVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA-- 242 (287)
Q Consensus 169 ia~ggG~--v~~~~~~~~L~~-g~-~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~-- 242 (287)
+++.... -.+...+.++.+ ++ +|||++|++.+.+| ..||++..... +.+..++..|.| |+
T Consensus 100 I~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R------~~r~l~~~~~~-------~~~~~l~~~r~~-Y~~p 165 (198)
T PRK03846 100 LTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEAR------DPKGLYKKARA-------GEIRNFTGIDSV-YEAP 165 (198)
T ss_pred EEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhc------CchhHHHHhhc-------CCccCccccccc-CCCC
Confidence 4322110 011123334444 55 79999999999999 12777653211 224456677888 88
Q ss_pred h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 243 N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 243 ~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
. ||++| ||++.++++++++|++.+..
T Consensus 166 ~~ad~~I------------dt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 166 ESPEIHL------------DTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred CCCCEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence 5 67765 88899999999999998864
No 34
>PRK14530 adenylate kinase; Provisional
Probab=99.53 E-value=4.2e-13 Score=118.86 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=75.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchh---------hhhhhHHHHHHHhh-
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEA---------YFREYESKALQKLS- 162 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~---------~fr~~e~~~l~~l~- 162 (287)
.|..|+|+||+||||||+++.||..+++.|+++|+++.+.. +.++.++....|.. ........++++..
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~-~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANK-QMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhc-cCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999998776 55555543332321 11123334444432
Q ss_pred cCCCeEEecCCceEeccccHHhhc----CCcEEEEecCHHHHHHHHhhcC
Q 023118 163 LVPQQVVATGGGAVVRPLNWRFMR----QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 163 ~~~~~via~ggG~v~~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
.....|+. | .+.+....+.|. .+.+|||++|.+.+.+|+..+.
T Consensus 81 ~~~~~Ild-G--~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 81 DADGFVLD-G--YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred cCCCEEEc-C--CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 23333443 3 333333334432 3789999999999999998763
No 35
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.52 E-value=1.6e-13 Score=117.56 Aligned_cols=156 Identities=22% Similarity=0.221 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCc----cccchhHHHHHhCC-----Cchhhhhhhhchhhh----------hhhH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYT----FADSDKYVEKLMGG-----TSVAQIFKESGEAYF----------REYE 154 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~----fid~d~~ie~~~~G-----~~i~~~~~~~g~~~f----------r~~e 154 (287)
|+.++|+|||||||||+++.|+..++.. |+.+..--....+| .+..+++...+...| ...-
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 5689999999999999999999987542 21110000000011 111122111111101 0111
Q ss_pred HHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118 155 SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS 234 (287)
Q Consensus 155 ~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~ 234 (287)
..+.........|+++|++.+. +..++.+....+|||++|++.+.+|+..|+ +|.. +.+.+.+
T Consensus 81 -~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~---~~~~------------~~~~~rl 143 (179)
T TIGR02322 81 -AEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARG---RESR------------EEIEERL 143 (179)
T ss_pred -HHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcC---CCCH------------HHHHHHH
Confidence 1223333345568888886543 334444456789999999999999998753 3321 2233444
Q ss_pred HHHHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 235 KERSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 235 ~~R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
.|.+.|. .+|+.+ ++++ .++++++.+|.+.+.
T Consensus 144 -~~~~~~~~~~~~~~v-----------i~~~-~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 144 -ARSARFAAAPADVTT-----------IDNS-GSLEVAGETLLRLLR 177 (179)
T ss_pred -HHHhhcccccCCEEE-----------EeCC-CCHHHHHHHHHHHHc
Confidence 4667775 367664 3454 589999999988775
No 36
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.50 E-value=7.6e-13 Score=118.10 Aligned_cols=163 Identities=23% Similarity=0.296 Sum_probs=94.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhh------hhhhh----------------ch
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQ------IFKES----------------GE 147 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~------~~~~~----------------g~ 147 (287)
..|+|+||+||||||+++.|++.+++.|+|+|.++... ..|.++.+ ..... |+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 82 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGE 82 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCc
Confidence 37999999999999999999999999999999885332 12332211 00000 11
Q ss_pred ---------------------hhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHH
Q 023118 148 ---------------------AYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRI 204 (287)
Q Consensus 148 ---------------------~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri 204 (287)
+..|..-...+++++... .+|..|. |.+..+. ..+.|||++|++.+++|.
T Consensus 83 ~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~a~~~-~~Vi~Gr~~~~~v~~~------a~~~ifl~a~~~~Ra~Rr 155 (217)
T TIGR00017 83 DVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKND-GIIADGRDIGTVVFPN------AEVKIFLDASVEERAKRR 155 (217)
T ss_pred chHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC-CEEEEEcCcceEEeCC------CCEEEEEECCHHHHHHHH
Confidence 111212222333333322 3444443 2232222 258999999999999997
Q ss_pred hhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHH
Q 023118 205 AAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQ 277 (287)
Q Consensus 205 ~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~ 277 (287)
..+.. ..+ ....| +++.+.+.+|+..-.. +. +--+.+.+..+|||++++++++++.|++.
T Consensus 156 ~~~~~-----~~g-~~~~~----e~~~~~i~~RD~~D~~R~~---~~~~~a~~~i~Idts~l~ieevv~~I~~~ 216 (217)
T TIGR00017 156 YKQLQ-----IKG-NEVNF----EELLAEIKERDDRDSNREV---APLKKADDALYLDTSNLSIDEVVEKILEY 216 (217)
T ss_pred HHHHh-----ccC-CCCCH----HHHHHHHHHHHhccccccc---CcccCCCCeEEEECCCCCHHHHHHHHHHh
Confidence 65321 110 01233 4556667777532211 10 01122333445899999999999999764
No 37
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.50 E-value=3.3e-14 Score=121.68 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
|+.|+|+|++||||||+++.|++.+. ..|+|+|.+...+..+..... ......++... .+.+.+.. .+.+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~---~~r~~~~~~~~-~~a~~~~~-~g~~ 78 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSK---EDRDTNIRRIG-FVANLLTR-HGVI 78 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCCh---hhHHHHHHHHH-HHHHHHHh-CCCE
Confidence 89999999999999999999999883 567899887644432322111 11122233221 12222222 3334
Q ss_pred EecCCceEeccccHHhhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh-h
Q 023118 169 VATGGGAVVRPLNWRFMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA-N 243 (287)
Q Consensus 169 ia~ggG~v~~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~-~ 243 (287)
+.+++..+ ....+..++ +..+|||++|++.+.+|. .+|++.... .+.+..++..|.++|. .
T Consensus 79 vi~~~~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~------~~~l~~~~~-------~~~i~~~~~~~~~~~~p~ 144 (175)
T PRK00889 79 VLVSAISP-YRETREEVRANIGNFLEVFVDAPLEVCEQRD------VKGLYAKAR-------AGEIKHFTGIDDPYEPPL 144 (175)
T ss_pred EEEecCCC-CHHHHHHHHhhcCCeEEEEEcCCHHHHHHhC------cccHHHHHH-------cCCCCCCcccCCCCCCCC
Confidence 44444322 233444443 256899999999999993 355543110 0224456678999997 3
Q ss_pred -CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 244 -ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 244 -ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
+|+++ |+++.++++++++|++.+..
T Consensus 145 ~ad~~i------------~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 145 NPEVEC------------RTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCcEEE------------ECCCCCHHHHHHHHHHHHHH
Confidence 77765 67788999999999999863
No 38
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.50 E-value=3.5e-13 Score=139.05 Aligned_cols=166 Identities=16% Similarity=0.164 Sum_probs=107.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhh--------------h------------
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIF--------------K------------ 143 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~--------------~------------ 143 (287)
..|+|.||+||||||+++.||+.+++.|+|+|.++.... .|.++.+.. .
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 379999999999999999999999999999998864421 233322210 0
Q ss_pred ----hh---------------------chhhhhhhHHHHHHHhhcCCC---------eEEecCC--ceEeccccHHhhcC
Q 023118 144 ----ES---------------------GEAYFREYESKALQKLSLVPQ---------QVVATGG--GAVVRPLNWRFMRQ 187 (287)
Q Consensus 144 ----~~---------------------g~~~fr~~e~~~l~~l~~~~~---------~via~gg--G~v~~~~~~~~L~~ 187 (287)
.. ..+..|+.-....++++.... .+|..|. |+|..|.+
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~~~~~~~~~~~~~~~v~eGRdigtvv~p~a------ 155 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIAREASADSFSGGLGIVAEGRDITTVVAPDA------ 155 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCccccccccCcEEEecCccceEEecCC------
Confidence 00 111233333334445442222 5777775 66766665
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCC
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDIT 266 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t 266 (287)
.+.|||+++++++++|...+.. . ..| +++.+.+.+|+..-.+ .+- -..+++..+|||++++
T Consensus 156 ~~K~~l~A~~~~Ra~Rr~~~~~------~----~~~----~~~~~~~~~Rd~~d~R~~~p----l~~~~da~~idts~~~ 217 (712)
T PRK09518 156 EVRILLTAREEVRQARRSGQDR------S----ETP----GVVLEDVAARDEADSKVTSF----LSAADGVTTLDNSDLD 217 (712)
T ss_pred CeEEEEECCHHHHHHHHHHhhh------c----CCH----HHHHHHHHHHhhhcccccCC----CCCCCCeEEEECCCCC
Confidence 4899999999999999764321 1 334 3444455666643222 111 1235555669999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 023118 267 PTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 267 ~~eva~~i~~~i~~~l~~ 284 (287)
++||++.|+..+++.+..
T Consensus 218 ~~~v~~~i~~~i~~~~~~ 235 (712)
T PRK09518 218 FDETLDLLIGLVEDAIEE 235 (712)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999877653
No 39
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.48 E-value=2e-14 Score=129.69 Aligned_cols=89 Identities=20% Similarity=0.352 Sum_probs=76.2
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKE 144 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~ 144 (287)
|++++||+|.|+++.+++++||+|++ |+.++|+|||||||||++|+|.+++.| ++|.+. ++|.++.++
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~---gef~vliGpSGsGKTTtLkMINrLiep---t~G~I~---i~g~~i~~~--- 68 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEE---GEFLVLIGPSGSGKTTTLKMINRLIEP---TSGEIL---IDGEDISDL--- 68 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecC---CeEEEEECCCCCcHHHHHHHHhcccCC---CCceEE---ECCeecccC---
Confidence 58999999999999999999999999 999999999999999999999999999 677765 589888776
Q ss_pred hchhhhhhhHHHHHHHhhcCCC
Q 023118 145 SGEAYFREYESKALQKLSLVPQ 166 (287)
Q Consensus 145 ~g~~~fr~~e~~~l~~l~~~~~ 166 (287)
..-..|+.--.++++++..+.
T Consensus 69 -d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 69 -DPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred -CHHHHHHhhhhhhhhcccCCC
Confidence 445566666677777776554
No 40
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.47 E-value=3.1e-14 Score=134.81 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=61.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
+.++++|+++.||+..+++|+|++|.+ |++++|+|||||||||++++|||...| |+|.+. ++|.++..
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~---Gef~~lLGPSGcGKTTlLR~IAGfe~p---~~G~I~---l~G~~i~~ 71 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKK---GEFVTLLGPSGCGKTTLLRMIAGFEQP---SSGEIL---LDGEDITD 71 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEECCC
Confidence 469999999999999999999999999 999999999999999999999999999 788774 45665544
No 41
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.5e-14 Score=133.76 Aligned_cols=68 Identities=21% Similarity=0.340 Sum_probs=60.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
..++++|++|.||+..+++++|+++++ |++++|+|||||||||++++|||+..+ ++|.+. ++|.++++
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~---Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~---i~g~~vt~ 69 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIED---GEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEIL---IDGRDVTD 69 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEECCC
Confidence 468999999999976699999999999 999999999999999999999999999 677764 46666555
No 42
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=5.2e-14 Score=126.66 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=58.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
.+++++++++.|+...+|+|+||+|.+ |++++|+||||||||||+++|||++.| ++|.+. .+|..+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~---GEfvsilGpSGcGKSTLLriiAGL~~p---~~G~V~---~~g~~v 67 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEK---GEFVAILGPSGCGKSTLLRLIAGLEKP---TSGEVL---LDGRPV 67 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCccc
Confidence 358999999999999999999999999 999999999999999999999999999 677653 345544
No 43
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.46 E-value=5.4e-14 Score=124.24 Aligned_cols=65 Identities=28% Similarity=0.380 Sum_probs=58.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+|+++|++|+||+.++|+++|+++.+ |+.++|+||||||||||+|.|.++..+ |+|.+. ++|..+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~---Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~---i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEK---GEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSIT---VDGEDV 66 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcC---CCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEE---ECCEec
Confidence 68999999999999999999999999 999999999999999999999999988 677665 456444
No 44
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.46 E-value=2.8e-12 Score=110.78 Aligned_cols=159 Identities=16% Similarity=0.231 Sum_probs=95.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHh-hcCCC
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKL-SLVPQ 166 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l-~~~~~ 166 (287)
.|+.++|+|+|||||||+++.|++.+++.++|+|.+. .++..|....+. ....+...-......+ .....
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 77 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDE----DRLPWLERLNDASYSLYKKNET 77 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcc----cchHHHHHHHHHHHHHHhcCCC
Confidence 4899999999999999999999999999999999852 222234433321 1111221212222222 11123
Q ss_pred eEEecCCceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118 167 QVVATGGGAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA 242 (287)
Q Consensus 167 ~via~ggG~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~ 242 (287)
.++.++. .....++.+++ + .+|||++|++.+.+|+..|..+.. .. +-+...++..+|...
T Consensus 78 g~iv~s~---~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~------~~-------~vl~~Q~~~~e~~~~ 141 (176)
T PRK09825 78 GFIVCSS---LKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFM------PP-------DLLQSQFDALERPCA 141 (176)
T ss_pred EEEEEEe---cCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCC------CH-------HHHHHHHHHcCCCCC
Confidence 3333332 23334455543 2 579999999999999998764321 11 223333333333333
Q ss_pred h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 243 N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 243 ~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
. .+... +|++. +|+++++.+..+++.+..
T Consensus 142 ~e~~~~~-----------~d~~~-~~~~~~~~~~~~~~~~~~ 171 (176)
T PRK09825 142 DEHDIAR-----------IDVNH-DIENVTEQCRQAVQAFRQ 171 (176)
T ss_pred CcCCeEE-----------EECCC-CHHHHHHHHHHHHHHHHh
Confidence 2 34333 78886 789999999999987654
No 45
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.44 E-value=3.6e-12 Score=114.25 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH-----HhCCCchhhh--hhh--------------------hc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK-----LMGGTSVAQI--FKE--------------------SG 146 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~-----~~~G~~i~~~--~~~--------------------~g 146 (287)
..+|+|.|++||||||++++|++.++++|+|+|.++.. ...|.++.+. ..+ .|
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 46899999999999999999999999999999997443 2246655442 000 00
Q ss_pred ---------------------hhhhhhhHHHHHHHhhcCCCeEEecCCceEeccccHHhhcC-CcEEEEecCHHHHHHHH
Q 023118 147 ---------------------EAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRI 204 (287)
Q Consensus 147 ---------------------~~~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri 204 (287)
.+..|+.-....+.++...+ +|..|.. ..+..++. .+.|||++|.+.+++|.
T Consensus 84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~-~Vi~GR~-----~~~~vl~~a~~~ifl~a~~e~R~~Rr 157 (225)
T PRK00023 84 EDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPG-LVMDGRD-----IGTVVFPDAELKIFLTASAEERAERR 157 (225)
T ss_pred cchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCC-EEEEecC-----hheEEeCCCCEEEEEECCHHHHHHHH
Confidence 00111111112223333222 3333421 01112332 68999999999998885
Q ss_pred hhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 205 AAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 205 ~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
.... ..+ .....++++.+.+.+.-..|...|- .+.. .+.+..+|||+.++++++++.|.+.+++.+
T Consensus 158 ~~~~-~~~-----g~~~~~~~~~~~i~~rD~~~~~r~~-~~l~-----~~~d~l~IDTs~l~~ee~v~~I~~~i~~~~ 223 (225)
T PRK00023 158 YKEL-QAK-----GISVDFEDLLAEIKERDERDSNRAV-APLK-----PAEDALLLDTSGLSIEEVVEKILALVEEKL 223 (225)
T ss_pred HHHH-Hhc-----CCCCCHHHHHHHHHHHHHhhhhccc-cccc-----ccCCEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 4321 001 1123444444444333222222221 1111 011123589999999999999999998654
No 46
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.43 E-value=5.5e-12 Score=108.15 Aligned_cols=165 Identities=16% Similarity=0.224 Sum_probs=95.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
..+|+|+|++||||||+++.|+..++..++++|+++.+.. .+.+ +..++. .|...-...-.+.+.+.... .
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~---~ 78 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIME-SGDLVPLDTVLDLLKDAMVA---A 78 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHc---c
Confidence 5689999999999999999999999999999999876653 2222 222221 12110000001111111100 1
Q ss_pred EecCCceEecc--ccH---Hhhc-----CCcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118 169 VATGGGAVVRP--LNW---RFMR-----QGITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKER 237 (287)
Q Consensus 169 ia~ggG~v~~~--~~~---~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~R 237 (287)
+..|.|.|++. .++ ..+. ...+|||++|++.+.+|+..|+.. .|+. ...+. ..+++...++++
T Consensus 79 ~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d---~~~~~---~~~r~~~~~~~~ 152 (188)
T TIGR01360 79 LGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVD---DNEKT---IKKRLETYYKAT 152 (188)
T ss_pred cCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCC---CCHHH---HHHHHHHHHHhh
Confidence 22233334332 222 1121 257899999999999999876521 2211 11122 235666666666
Q ss_pred Hhh---hhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 238 SEA---YAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 238 ~~~---Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.|. |.. ..+.+ ||.+ .+++++..+|...++.
T Consensus 153 ~~~~~~y~~~~~~~~-----------id~~-~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 153 EPVIAYYETKGKLRK-----------INAE-GTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHHHHHHhCCCEEE-----------EECC-CCHHHHHHHHHHHHhc
Confidence 654 543 33333 5765 6999999999998864
No 47
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.42 E-value=2.4e-12 Score=134.30 Aligned_cols=166 Identities=17% Similarity=0.137 Sum_probs=103.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCc--------hhh---hh-------------h
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTS--------VAQ---IF-------------K 143 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~--------i~~---~~-------------~ 143 (287)
.+-.|+|.||+||||||+++.||..+++.|+|+|.++.... .|.+ +.+ +. .
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTS 112 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceE
Confidence 35689999999999999999999999999999999865542 3321 111 00 0
Q ss_pred -----------------------------------hhc---hhhhhhhHHH------------------HHHHhhcCCCe
Q 023118 144 -----------------------------------ESG---EAYFREYESK------------------ALQKLSLVPQQ 167 (287)
Q Consensus 144 -----------------------------------~~g---~~~fr~~e~~------------------~l~~l~~~~~~ 167 (287)
.+| ....|..+.. ..++++.. ..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~-~~ 191 (863)
T PRK12269 113 YAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCG-AR 191 (863)
T ss_pred ecccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-CC
Confidence 000 1111222211 22233322 34
Q ss_pred EEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-C
Q 023118 168 VVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-A 244 (287)
Q Consensus 168 via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-a 244 (287)
+|..|. |+|..|++. +.|||+++++++++|=.. .+.. ...| +++.+-+.+|+..-.. +
T Consensus 192 ~V~eGRDigTvVfPdA~------~KifL~As~e~RA~RR~~------e~~~---~~~~----~~i~~~i~~RD~~D~~R~ 252 (863)
T PRK12269 192 VVCEGRDLTTVVFVDAD------LKCYLDASIEARVARRWA------QGTS---RLSK----QELEQRMRARDAHDRART 252 (863)
T ss_pred EEEECCCCccEECCCCC------EEEEEECCHHHHHHHHHH------hhhc---cCCH----HHHHHHHHHhhhhhccCc
Confidence 666665 677777654 889999999999999332 2221 1234 5566666778744432 1
Q ss_pred CeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 245 DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 245 d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
-.-+ ..|.+..+|||+++|++|+++.|+..++..
T Consensus 253 ~~pL---~~a~dAi~iDts~l~ieevv~~i~~~~~~~ 286 (863)
T PRK12269 253 VGGL---RCAPDALYVDTSCLTIEEVCERIAREAHRR 286 (863)
T ss_pred cCCC---ccCCCeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 1000 023344459999999999999999999753
No 48
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.41 E-value=1.7e-13 Score=122.59 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=62.8
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
+++++|+++.|+. ..+|+++||+|++ |+.++|+||||||||||+++|+++..| ++|.++ +.|.++..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~---Ge~vaI~GpSGSGKSTLLniig~ld~p---t~G~v~---i~g~d~~~ 71 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEA---GEFVAIVGPSGSGKSTLLNLLGGLDKP---TSGEVL---INGKDLTK 71 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCceEE---ECCEEcCc
Confidence 4679999999953 4799999999999 999999999999999999999999999 788755 46877665
Q ss_pred hhhhhchhhhh
Q 023118 141 IFKESGEAYFR 151 (287)
Q Consensus 141 ~~~~~g~~~fr 151 (287)
+ .......||
T Consensus 72 l-~~~~~~~~R 81 (226)
T COG1136 72 L-SEKELAKLR 81 (226)
T ss_pred C-CHHHHHHHH
Confidence 5 233344454
No 49
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.39 E-value=4.4e-13 Score=120.11 Aligned_cols=70 Identities=23% Similarity=0.371 Sum_probs=63.2
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.+.+++++|+++||++.+++++||+|.+ |++.+|+||||||||||+|.|.|++.| +.|.+. ..|.++.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~---Gei~~iiGgSGsGKStlLr~I~Gll~P---~~GeI~---i~G~~i~~l 75 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPR---GEILAILGGSGSGKSTLLRLILGLLRP---DKGEIL---IDGEDIPQL 75 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecC---CcEEEEECCCCcCHHHHHHHHhccCCC---CCCeEE---EcCcchhcc
Confidence 4679999999999999999999999999 999999999999999999999999999 677764 457776655
No 50
>PRK06762 hypothetical protein; Provisional
Probab=99.38 E-value=5.8e-12 Score=106.64 Aligned_cols=152 Identities=12% Similarity=0.043 Sum_probs=93.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ 171 (287)
...|+|.|++||||||+++.|+..+ +..+++.|.+......+..-.. ....+. -...++........|+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~g~~vild 74 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPG---NLSIDL----IEQLVRYGLGHCEFVILE 74 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCC---CcCHHH----HHHHHHHHHhCCCEEEEc
Confidence 4689999999999999999999998 4556888887654432211000 001111 111222222223345444
Q ss_pred CCceEeccc---cHHhhcC--C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh
Q 023118 172 GGGAVVRPL---NWRFMRQ--G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN 243 (287)
Q Consensus 172 ggG~v~~~~---~~~~L~~--g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ 243 (287)
+. ..... .+..+.+ + ..|||++|++++.+|+..|. ..+... .+.+...|+.|+++|.
T Consensus 75 ~~--~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~-----~~~~~~-------~~~l~~~~~~~~~~~~- 139 (166)
T PRK06762 75 GI--LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRP-----KSHEFG-------EDDMRRWWNPHDTLGV- 139 (166)
T ss_pred hh--hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccc-----ccccCC-------HHHHHHHHhhcCCcCC-
Confidence 32 11111 1222321 2 68999999999999987653 221111 1567888889998864
Q ss_pred CCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 244 ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 244 ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
++.+ ++|++.+++||++.|+.++.
T Consensus 140 ~~~~------------~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 140 IGET------------IFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred CCeE------------EecCCCCHHHHHHHHHHHhc
Confidence 4544 47888999999999998874
No 51
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.38 E-value=4.8e-13 Score=126.87 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=54.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~---Gei~gLlGpNGaGKSTLl~~L~Gl~~p---~~G~i 98 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVAS---GECFGLLGPNGAGKSTIARMILGMTSP---DAGKI 98 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CceEE
Confidence 469999999999999999999999999 999999999999999999999999988 45543
No 52
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=5.3e-13 Score=119.26 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=58.8
Q ss_pred ccEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
++|+++||++.| +++++|+++||++++ |+.++|+|+||||||||+|.|+++.++ ..|.++ .+|..+..
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~---GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~---~~g~~i~~ 70 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQ---GEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEIL---FNGVQITK 70 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCC---CcEEEEECCCCCcHHHHHHHHhcccCC---CcceEE---ecccchhc
Confidence 479999999999 889999999999999 999999999999999999999998888 455554 35554433
No 53
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.3e-13 Score=120.30 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=58.4
Q ss_pred ccEEEcceEEEcCCee----eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKW----LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~----il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|+++.|+... +++++||++.+ |++++|+|+||||||||+++|+|+..| +.|.+. ++|..+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~---Ge~lgivGeSGsGKSTL~r~l~Gl~~p---~~G~I~---~~G~~~ 71 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIER---GETLGIVGESGSGKSTLARLLAGLEKP---SSGSIL---LDGKPL 71 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecC---CCEEEEEcCCCCCHHHHHHHHhcccCC---CCceEE---ECCccc
Confidence 4799999999998776 99999999999 999999999999999999999999999 677664 456443
No 54
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.37 E-value=2.3e-13 Score=116.29 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=66.4
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKE 144 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~ 144 (287)
.++++++...-++..+|+++||.+.+ |++|+|+||||||||||+|++|.+..| |+|.+. +.|.+++.+
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~---Ge~iaitGPSG~GKStllk~va~Lisp---~~G~l~---f~Ge~vs~~--- 70 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRA---GEFIAITGPSGCGKSTLLKIVASLISP---TSGTLL---FEGEDVSTL--- 70 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecC---CceEEEeCCCCccHHHHHHHHHhccCC---CCceEE---EcCcccccc---
Confidence 45667776666788999999999999 999999999999999999999999999 677776 579988777
Q ss_pred hchhhhhhhHH
Q 023118 145 SGEAYFREYES 155 (287)
Q Consensus 145 ~g~~~fr~~e~ 155 (287)
+.+.||..-.
T Consensus 71 -~pea~Rq~Vs 80 (223)
T COG4619 71 -KPEAYRQQVS 80 (223)
T ss_pred -ChHHHHHHHH
Confidence 8888885443
No 55
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.37 E-value=2.5e-13 Score=117.95 Aligned_cols=68 Identities=18% Similarity=0.340 Sum_probs=60.3
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
|++++||+|.|+ +.++|+|+||++++ |+.++|+|||||||||++|+|.+...| +.|.+. ++|.++..+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~---Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~---~~~~dl~~l 69 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPK---GEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKIL---VNGHDLSRL 69 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecC---ceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEE---ECCeecccc
Confidence 589999999996 46699999999999 999999999999999999999999999 566665 478777666
No 56
>PRK01184 hypothetical protein; Provisional
Probab=99.35 E-value=1.1e-11 Score=106.65 Aligned_cols=162 Identities=16% Similarity=0.174 Sum_probs=90.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHH---HHHHHhhcCCCeEEecC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYES---KALQKLSLVPQQVVATG 172 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~---~~l~~l~~~~~~via~g 172 (287)
.|+|+|++||||||+++ ++..++++++++|+++.+...+..+..+....|+..++..+. .++..++. ..+...+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~i~~~~ 79 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTV--PKIREKG 79 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHH--HHHHhcC
Confidence 78999999999999998 678899999999888766542112222222223322221111 11111110 0111112
Q ss_pred -CceEeccc-c---HHhh----c-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-----H
Q 023118 173 -GGAVVRPL-N---WRFM----R-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-----R 237 (287)
Q Consensus 173 -gG~v~~~~-~---~~~L----~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-----R 237 (287)
..+|.+.- . .+.+ . ...+||+++|.+.+.+|+..++ +|- ++... +.+.+..+. .
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~---~~~----d~~~~----~~~~~r~~~q~~~~~ 148 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRG---RSD----DPKSW----EELEERDERELSWGI 148 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcC---CCC----ChhhH----HHHHHHHHHHhccCH
Confidence 22233221 1 1222 2 2478999999999999998754 321 01111 223333222 2
Q ss_pred HhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 238 SEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 238 ~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
.+.+..||++| |++ .++++...++.+.++.+++.
T Consensus 149 ~~~~~~ad~vI------------~N~-~~~~~l~~~v~~~~~~~~~~ 182 (184)
T PRK01184 149 GEVIALADYMI------------VND-STLEEFRARVRKLLERILRS 182 (184)
T ss_pred HHHHHhcCEEE------------eCC-CCHHHHHHHHHHHHHHHhcc
Confidence 23566688876 433 38999999999998877653
No 57
>PRK06217 hypothetical protein; Validated
Probab=99.35 E-value=1.4e-11 Score=106.58 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=67.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG 174 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG 174 (287)
..|+|+|++||||||+++.|+..++.+|+|.|.++.+.. +.+. ...+...++ +..+++.+......|+. |.-
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~-~~~~----~~~~~~~~~--~~~~~~~~~~~~~~vi~-G~~ 73 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT-DPPF----TTKRPPEER--LRLLLEDLRPREGWVLS-GSA 73 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC-CCCc----cccCCHHHH--HHHHHHHHhcCCCEEEE-ccH
Confidence 469999999999999999999999999999999884332 3221 112222222 33344444443444554 331
Q ss_pred eEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcC
Q 023118 175 AVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 175 ~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
. . .....+. .+.+|||++|++.+.+|+..|.
T Consensus 74 -~-~-~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 74 -L-G-WGDPLEPLFDLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred -H-H-HHHHHHhhCCEEEEEECCHHHHHHHHHcCc
Confidence 1 1 0111222 3789999999999999999874
No 58
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.35 E-value=7.1e-13 Score=116.76 Aligned_cols=65 Identities=28% Similarity=0.374 Sum_probs=56.5
Q ss_pred cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.| ++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+. ++|.++
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~---G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~---~~g~~~ 66 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRK---GEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVR---IAGEDV 66 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence 47899999999 567899999999999 999999999999999999999999887 566654 356544
No 59
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=9.3e-13 Score=119.57 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=54.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|+..++|+|+||++.+ |+.++|+||||+|||||+|.|.|++.| ..|.+
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~---G~~~~iiGPNGaGKSTLlK~iLGll~p---~~G~i 61 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEK---GEITALIGPNGAGKSTLLKAILGLLKP---SSGEI 61 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCcC---CcceE
Confidence 469999999999965899999999999 999999999999999999999999998 45554
No 60
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.35 E-value=6.5e-13 Score=118.81 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=53.0
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~ 58 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRR---GEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVL 58 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 4689999999988899999999999 999999999999999999999999988 566553
No 61
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.34 E-value=8.3e-13 Score=120.88 Aligned_cols=61 Identities=18% Similarity=0.221 Sum_probs=55.5
Q ss_pred CCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 62 NAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 62 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++.+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 4 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 64 (269)
T PRK11831 4 VANLVDMRGVSFTRGNRCIFDNISLTVPR---GKITAIMGPSGIGKTTLLRLIGGQIAP---DHGEI 64 (269)
T ss_pred ccceEEEeCeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence 34579999999999988999999999999 999999999999999999999999987 55554
No 62
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.34 E-value=7.6e-13 Score=116.86 Aligned_cols=64 Identities=27% Similarity=0.358 Sum_probs=55.7
Q ss_pred EEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++ ..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~---G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~---~~g~~~ 68 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEK---GEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVR---VDGTDI 68 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcC---CCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEE---ECCEeh
Confidence 468999999976 7899999999999 999999999999999999999999988 566654 356554
No 63
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.34 E-value=1.1e-12 Score=114.83 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=57.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+. ++|.++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~---~~g~~~ 65 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPA---GGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEIL---FERQSI 65 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEE---ECCCcc
Confidence 47899999999988899999999999 999999999999999999999999988 566654 456554
No 64
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.34 E-value=1e-12 Score=115.99 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=56.7
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
+++++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~~ 68 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITK---GEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIR---FNGQDLT 68 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEehh
Confidence 4789999999964 4699999999999 999999999999999999999999988 566654 4565553
No 65
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=8.3e-13 Score=116.34 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=55.6
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~---~~g~~~ 64 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEP---GEFLALLGPSGCGKTTLLRLIAGLERP---DSGEIL---IDGRDV 64 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEc
Confidence 4689999999888899999999999 999999999999999999999999987 566553 345443
No 66
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.34 E-value=2.5e-13 Score=121.75 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=61.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
+++++++++++||+..+++|+||++.+ |++++||||||+||||+.++|+|.+.| |+|.++ +.|.+|+.
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~---Gei~~LIGPNGAGKTTlfNlitG~~~P---~~G~v~---~~G~~it~ 70 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRP---GEIVGLIGPNGAGKTTLFNLITGFYKP---SSGTVI---FRGRDITG 70 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcC---CeEEEEECCCCCCceeeeeeecccccC---CCceEE---ECCcccCC
Confidence 468999999999999999999999999 999999999999999999999999999 788775 45665543
No 67
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=9.4e-13 Score=116.66 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=53.2
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~ 58 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRR---GEIFGLLGPNGAGKTTTIKMLTTLLKP---TSGRAT 58 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 4789999999988999999999999 999999999999999999999999888 566554
No 68
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.33 E-value=1.1e-12 Score=119.42 Aligned_cols=58 Identities=22% Similarity=0.345 Sum_probs=53.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|++..+++|+||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 58 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLES---GELLVVLGPSGCGKTTLLNLIAGFVPY---QHGSI 58 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence 47899999999888899999999999 999999999999999999999999987 56655
No 69
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.33 E-value=1.2e-12 Score=115.08 Aligned_cols=64 Identities=22% Similarity=0.260 Sum_probs=55.4
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 64 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEK---GEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVL---FDGKPL 64 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCCch
Confidence 4689999999988899999999999 999999999999999999999999887 566554 345443
No 70
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.33 E-value=1e-12 Score=117.94 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=56.7
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|+ +..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~ 66 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINP---GEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSIL---LEGTDI 66 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEE---ECCEEh
Confidence 478999999998 77899999999999 999999999999999999999999987 566654 355544
No 71
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.2e-12 Score=117.58 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=54.7
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~~sl~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 61 (241)
T PRK10895 2 ATLTAKNLAKAYKGRRVVEDVSLTVNS---GEIVGLLGPNGAGKTTTFYMVVGIVPR---DAGNII 61 (241)
T ss_pred ceEEEeCcEEEeCCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence 368999999999988999999999999 999999999999999999999999987 566543
No 72
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.33 E-value=2.2e-11 Score=113.01 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=87.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
.+.|+|.|++||||||+++.|.. .|+.++| +.++..+ ..| - +.+.+-.......+..+-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d----------~~~~~L~------~~l---~-~~~~~~~~~~~~av~iD~ 64 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-LGYYCVD----------NLPPSLL------PKL---V-ELLAQSGGIRKVAVVIDV 64 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-cCCeEEC----------CcCHHHH------HHH---H-HHHHhcCCCCCeEEEEcc
Confidence 67899999999999999999963 4665443 3332221 000 0 001110001111222111
Q ss_pred ---ceE-eccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCC
Q 023118 174 ---GAV-VRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANAD 245 (287)
Q Consensus 174 ---G~v-~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad 245 (287)
+.. ....++..|++ | .+|||+++++++++|+.... ..||++... .. .+.+.+..+.+.|+|+.||
T Consensus 65 r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~r-r~RPLl~~~---~l---~e~I~~eR~~l~pl~~~AD 137 (288)
T PRK05416 65 RSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETR-RRHPLSGDG---SL---LEGIELERELLAPLRERAD 137 (288)
T ss_pred CchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcc-cCCCccCCc---cH---HHHHHHHHhhhhhHHHhCC
Confidence 110 11234444543 4 56999999999999997532 358987531 11 1233343334467777799
Q ss_pred eEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 246 ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 246 ~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
++| ||++++++|++++|.+.+..
T Consensus 138 ivI------------DTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 138 LVI------------DTSELSVHQLRERIRERFGG 160 (288)
T ss_pred EEE------------ECCCCCHHHHHHHHHHHHhc
Confidence 775 89999999999999998854
No 73
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.33 E-value=1.3e-12 Score=117.60 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=54.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+.++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~ 61 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEG---GAIYTIVGPSGAGKSTLIKLINRLIDP---TEGSIL 61 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence 358999999999888899999999999 999999999999999999999999987 566553
No 74
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.33 E-value=1.3e-12 Score=114.57 Aligned_cols=65 Identities=20% Similarity=0.292 Sum_probs=57.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|+...+++++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~v~---~~g~~~ 65 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNA---GELVQIEGPNGAGKTSLLRILAGLARP---DAGEVL---WQGEPI 65 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEc
Confidence 47899999999988899999999999 999999999999999999999999988 566654 455544
No 75
>PLN02674 adenylate kinase
Probab=99.33 E-value=8.5e-11 Score=106.68 Aligned_cols=168 Identities=18% Similarity=0.214 Sum_probs=108.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
..+|+|+||+||||||+++.||..+++.++++|+++.+.. .|..+.+++ ..|+.........++.+.....
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~-~~G~lvpd~iv~~lv~~~l~~~--- 106 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAM-DKGELVSDDLVVGIIDEAMKKP--- 106 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHH-HcCCccCHHHHHHHHHHHHhCc---
Confidence 4679999999999999999999999999999999987763 255556665 3788887777777776654332
Q ss_pred EecCCceEec--cccHH-------hhc-----CCcEEEEecCHHHHHHHHhhcCCC----------C-C-----------
Q 023118 169 VATGGGAVVR--PLNWR-------FMR-----QGITVFLNVPLDALARRIAAVGTD----------S-F----------- 212 (287)
Q Consensus 169 ia~ggG~v~~--~~~~~-------~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~----------~-R----------- 212 (287)
.++.|.+++ |.+.. .+. -..+|+|++|.+.+.+|+..|... + .
T Consensus 107 -~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~g 185 (244)
T PLN02674 107 -SCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVTG 185 (244)
T ss_pred -CcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccccccccCCccccccCCCcccCcccccC
Confidence 233455554 33321 121 146899999999999999876311 0 0
Q ss_pred -CCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 213 -PLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 213 -Pll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
|+... ..|..+....+|..-.+...| .|++-+..+. ||.+ .++++|.+.|...+
T Consensus 186 ~~L~~R-~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~----------Ida~-~~~~eV~~~i~~~l 243 (244)
T PLN02674 186 EPLIQR-KDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVAN----------LHAE-KPPKEVTAEVQKAL 243 (244)
T ss_pred CccccC-CCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHHh
Confidence 12221 223332233344333334444 4655443332 5665 48999999988765
No 76
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.33 E-value=1.1e-12 Score=116.36 Aligned_cols=65 Identities=25% Similarity=0.291 Sum_probs=56.4
Q ss_pred cEEEcceEEEcCCe----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGK----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++. .+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 69 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKK---GETLGLVGESGSGKSTLARAILGLLKP---TSGSII---FDGKDL 69 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence 47899999999765 799999999999 999999999999999999999999988 566654 456554
No 77
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.32 E-value=1.4e-12 Score=121.90 Aligned_cols=59 Identities=22% Similarity=0.294 Sum_probs=54.7
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~---Gei~gllGpNGaGKSTLl~~l~Gl~~p---~~G~v 64 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQR---GECFGLLGPNGAGKTTTLRMLLGLTHP---DAGSI 64 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence 479999999999988999999999999 999999999999999999999999988 56643
No 78
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.32 E-value=1.4e-12 Score=117.66 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=53.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i 60 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKP---GEVVAIIGPSGSGKTTLLRCINLLEQP---EAGTI 60 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence 68999999999888899999999999 999999999999999999999999877 55654
No 79
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.3e-12 Score=117.34 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=54.1
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~ 60 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPS---GELVALLGPSGSGKTTLLRLIAGLERP---DSGTIL 60 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 48899999999988899999999999 999999999999999999999999887 566553
No 80
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.32 E-value=1.2e-12 Score=114.99 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=55.7
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~---G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 64 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKK---GEVVVIIGPSGSGKSTLLRCINLLEEP---DSGTII---IDGLKL 64 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEC
Confidence 4689999999988899999999999 999999999999999999999999988 566654 345443
No 81
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=1.3e-12 Score=124.34 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=55.7
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I 63 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQ---GTMVTLLGPSGCGKTTVLRLVAGLEKP---TEGQI 63 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHHCCCCC---CceEE
Confidence 4579999999999988899999999999 999999999999999999999999988 56655
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.32 E-value=1.3e-12 Score=116.97 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=53.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|++++|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i 58 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRP---GEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQI 58 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CceEE
Confidence 47899999999988999999999999 999999999999999999999999987 56655
No 83
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.32 E-value=1.3e-12 Score=116.55 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=52.5
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i 57 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQ---GEIVGLLGPNGAGKTTTFYMIVGLVKP---DSGKI 57 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence 4689999999988899999999999 999999999999999999999999988 56654
No 84
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.32 E-value=1.4e-12 Score=121.48 Aligned_cols=59 Identities=24% Similarity=0.375 Sum_probs=53.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i 61 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIAR---GECFGLLGPNGAGKSTIARMLLGMISP---DRGKI 61 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 368999999999988899999999999 999999999999999999999999887 45543
No 85
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.32 E-value=1.1e-12 Score=115.93 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=52.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|++++|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~ 58 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPE---GEIVALLGRNGAGKTTLLKTIMGLLPP---RSGSIR 58 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence 4789999999888899999999999 999999999999999999999999988 566553
No 86
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=1.3e-12 Score=116.60 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=56.6
Q ss_pred cEEEcceEEEcCCe----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGK----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++. .+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 69 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPK---GEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVL---VDGTDL 69 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence 47899999999866 899999999999 999999999999999999999999988 566554 355544
No 87
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.32 E-value=1.4e-12 Score=117.05 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=53.9
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 59 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQ---GEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLI 59 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 47899999999888899999999999 999999999999999999999999887 566553
No 88
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.32 E-value=1.2e-12 Score=116.36 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=56.5
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchh
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+ .+ ++|.+. ++|.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~---~~g~~~~ 70 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPK---GEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVL---LDGKDIY 70 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEE---ECCEEhh
Confidence 4789999999888899999999999 9999999999999999999999998 66 567654 4565543
No 89
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.32 E-value=1.3e-12 Score=116.44 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=57.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+. ++|.++
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRA---GEFKLITGPSGCGKSTLLKIVASLISP---TSGTLL---FEGEDI 71 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEE---ECCEEc
Confidence 69999999999988899999999999 999999999999999999999999877 677664 455444
No 90
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.32 E-value=2e-12 Score=118.04 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=54.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i 68 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPA---GKVTGLIGHNGSGKSTLLKMLGRHQPP---SEGEI 68 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEE
Confidence 479999999999888999999999999 999999999999999999999999887 55654
No 91
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.31 E-value=1.4e-12 Score=114.84 Aligned_cols=64 Identities=25% Similarity=0.365 Sum_probs=55.7
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~---~~g~~~ 64 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIAD---GEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIY---IGGRDV 64 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEC
Confidence 4689999999988899999999999 999999999999999999999999988 566554 345443
No 92
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.31 E-value=1.4e-10 Score=99.53 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=89.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCc----hhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTS----VAQIFKESGEAYFREYESKALQKLSLVPQQVVA 170 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via 170 (287)
.|+|+|++||||||+++.|+..++..+++.|+++.+... +.. +.+++ ..|...-......++++......
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~---- 75 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADG---- 75 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccC----
Confidence 378999999999999999999999999999888766542 222 22222 23333333333344443322111
Q ss_pred cCCceEecc--cc------HH-hhc----CCcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 171 TGGGAVVRP--LN------WR-FMR----QGITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 171 ~ggG~v~~~--~~------~~-~L~----~g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
+.|.|++. .+ |. .+. -..+|||++|++.+.+|+..|... .|+ .+.. +.+..-.+.|.+
T Consensus 76 -~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~------dd~~-e~~~~r~~~y~~ 147 (183)
T TIGR01359 76 -SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRV------DDNI-ESIKKRFRTYNE 147 (183)
T ss_pred -CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCC------CCCH-HHHHHHHHHHHH
Confidence 22333322 21 11 222 146899999999999999876421 111 1111 111111112221
Q ss_pred -HH---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 237 -RS---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 237 -R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
.. ..|+..+..+ +||++ .++++|.+.|.+.+
T Consensus 148 ~~~~i~~~~~~~~~~~----------~Id~~-~~~~~v~~~i~~~l 182 (183)
T TIGR01359 148 QTLPVIEHYENKGKVK----------EINAE-GSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHhCCCEE----------EEECC-CCHHHHHHHHHHHh
Confidence 11 3344443322 26877 58999999888754
No 93
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.31 E-value=1.5e-12 Score=110.78 Aligned_cols=64 Identities=28% Similarity=0.364 Sum_probs=56.2
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++.++++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~---~~g~~~ 64 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRR---GEVHALLGENGAGKSTLMKILSGLYKP---DSGEIL---VDGKEV 64 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEC
Confidence 4689999999888899999999999 999999999999999999999999988 566654 456544
No 94
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.31 E-value=1.3e-12 Score=115.48 Aligned_cols=64 Identities=23% Similarity=0.284 Sum_probs=55.6
Q ss_pred EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
|+++|+++.|++ +++|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~ 66 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYK---GEIFGLLGHNGAGKTTTLKMLTGELRP---TSGTAY---INGYSI 66 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEec
Confidence 478999999986 7899999999999 999999999999999999999999988 566654 355544
No 95
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.31 E-value=1.3e-12 Score=119.61 Aligned_cols=58 Identities=21% Similarity=0.140 Sum_probs=53.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 58 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSL---SPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAV 58 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CccEE
Confidence 48899999999888899999999999 999999999999999999999999988 56654
No 96
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.31 E-value=1.3e-12 Score=116.69 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=55.5
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~ 64 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRP---GEIHGLIGPNGAGKTTLFNLISGFLRP---TSGSVL---FDGEDI 64 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEE---ECCEEC
Confidence 4689999999888899999999999 999999999999999999999999987 566553 345443
No 97
>PRK10908 cell division protein FtsE; Provisional
Probab=99.31 E-value=1.5e-12 Score=115.49 Aligned_cols=65 Identities=18% Similarity=0.305 Sum_probs=57.0
Q ss_pred cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.| ++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~i 66 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRP---GEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIW---FSGHDI 66 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEc
Confidence 47899999999 677899999999999 999999999999999999999999987 677654 456554
No 98
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.31 E-value=1.7e-12 Score=118.49 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=54.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~---Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i 69 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPA---GQFVAVVGRSGCGKSTLLRLLAGLETP---SAGEL 69 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence 569999999999988899999999999 999999999999999999999999987 55554
No 99
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=1.5e-12 Score=116.57 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=52.4
Q ss_pred EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~ 59 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINP---GEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVL 59 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEE
Confidence 468999999987 7899999999999 999999999999999999999999987 566553
No 100
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.31 E-value=1.7e-12 Score=114.71 Aligned_cols=65 Identities=22% Similarity=0.258 Sum_probs=56.2
Q ss_pred cEEEcceEEEcCCe----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGK----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++. .+++++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~ 69 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKP---GEVTGLLGPNGAGKTTTLRMLAGLLEP---DAGFAT---VDGFDV 69 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CCceEE---ECCEEc
Confidence 47899999999865 799999999999 999999999999999999999999988 566554 355544
No 101
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.30 E-value=1.5e-12 Score=114.69 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=54.7
Q ss_pred EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+. ++|.++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~---~~g~~~ 63 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKP---GEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIR---VFGKPL 63 (213)
T ss_pred CcccceeEECCEEeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEE---ECCccH
Confidence 368999999888899999999999 999999999999999999999999988 566654 355544
No 102
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.30 E-value=2.4e-12 Score=113.87 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=58.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|++++|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.+ +.|.+. ++|.++
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~i 75 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDA---GEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQ---IDGKTA 75 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECC---CCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEE---ECCEEc
Confidence 479999999999888899999999999 999999999999999999999999988 566554 355544
No 103
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.30 E-value=2e-12 Score=113.49 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=56.1
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++.++|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~ 64 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKK---GEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEIT---FDGKSY 64 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEE---ECCCcc
Confidence 4689999999888999999999999 999999999999999999999999987 566654 456544
No 104
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.30 E-value=2.3e-12 Score=113.44 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=54.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 60 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAA---GEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIK 60 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence 58999999999888899999999999 999999999999999999999999887 566554
No 105
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=1.7e-12 Score=116.21 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=54.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~ 63 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQ---GEIVTLIGANGAGKTTLLGTLCGDPRA---TSGRIV 63 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCceEE
Confidence 369999999999888899999999999 999999999999999999999999987 566553
No 106
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.30 E-value=1.8e-12 Score=115.48 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=52.9
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 58 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPK---GEVTCVLGRNGVGKTTLLKTLMGLLPV---KSGSIR 58 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE
Confidence 4689999999988999999999999 999999999999999999999999988 566553
No 107
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=1.5e-12 Score=113.89 Aligned_cols=68 Identities=21% Similarity=0.308 Sum_probs=61.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
|++++|++|+|+.+.+++++|+++++ |...+|+||||+|||||+.+++++++. |+|.+. ..|..++..
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~---g~iTs~IGPNGAGKSTLLS~~sRL~~~---d~G~i~---i~g~~~~~~ 68 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPK---GGITSIIGPNGAGKSTLLSMMSRLLKK---DSGEIT---IDGLELTST 68 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecC---CceeEEECCCCccHHHHHHHHHHhccc---cCceEE---EeeeecccC
Confidence 57899999999999999999999999 999999999999999999999999999 888775 467666543
No 108
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.3e-12 Score=116.84 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=53.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|++++|++..+|+++||++++ |++++|+|+||||||||+++|+|.+.+ ++|.+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i 59 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPT---GKITALIGPNGCGKSTLLKCFARLLTP---QSGTV 59 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CCcEE
Confidence 58999999999988999999999999 999999999999999999999999887 55644
No 109
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.30 E-value=1.9e-12 Score=111.40 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=55.9
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 64 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEA---GEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSIL---IDGEDL 64 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEc
Confidence 4689999999888899999999999 999999999999999999999999887 566654 356544
No 110
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.30 E-value=2.4e-12 Score=115.57 Aligned_cols=59 Identities=22% Similarity=0.248 Sum_probs=54.4
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~ 60 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDP---GELRVIIGPNGAGKTTMMDVITGKTRP---DEGSVL 60 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEE
Confidence 58999999999888899999999999 999999999999999999999999987 566554
No 111
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.3e-12 Score=116.51 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=55.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~ 63 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVRE---QEIVSLIGPNGAGKTTVFNCLTGFYKP---TGGTIL 63 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcC---CeEEEEECCCCCCHHHHHHHHhCCcCC---CcceEE
Confidence 469999999999988999999999999 999999999999999999999999887 566553
No 112
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2e-12 Score=115.65 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=57.6
Q ss_pred ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++++|+++.|+. ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~i~ 74 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGE---GEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVI---FNGQPMS 74 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEEcC
Confidence 36999999999964 5799999999999 999999999999999999999999987 566654 4565543
No 113
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.30 E-value=2.1e-12 Score=112.71 Aligned_cols=64 Identities=27% Similarity=0.337 Sum_probs=56.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 64 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNA---GEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVR---WNGTAL 64 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CccEEE---ECCEEc
Confidence 4689999999988999999999999 999999999999999999999999988 566654 456554
No 114
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.30 E-value=2.6e-12 Score=114.29 Aligned_cols=66 Identities=27% Similarity=0.285 Sum_probs=57.0
Q ss_pred ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~---~~g~~~ 74 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKR---GETIALIGESGSGKSTLLAILAGLDDG---SSGEVS---LVGQPL 74 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEE---ECCEEc
Confidence 46999999999975 3699999999999 999999999999999999999999988 566654 456544
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.30 E-value=2.4e-12 Score=113.91 Aligned_cols=66 Identities=21% Similarity=0.324 Sum_probs=56.5
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
+++++|+++.|++ ..+++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~~ 70 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGK---GEIVAIVGSSGSGKSTLLHLLGGLDNP---TSGEVL---FNGQSLS 70 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEhh
Confidence 3789999999964 5799999999999 999999999999999999999999988 566654 4565543
No 116
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.30 E-value=2.1e-12 Score=123.11 Aligned_cols=60 Identities=20% Similarity=0.195 Sum_probs=55.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+++++|++++|++..+|+++||++.+ |++++|+||||||||||+++|||.+.| ++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~GpsGsGKSTLLr~iaGl~~p---~~G~I~ 62 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKK---GEFVCLLGPSGCGKTTLLRIIAGLERQ---TAGTIY 62 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHCCCCC---CceEEE
Confidence 469999999999988899999999999 999999999999999999999999988 666553
No 117
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.30 E-value=2.3e-12 Score=115.72 Aligned_cols=59 Identities=17% Similarity=0.137 Sum_probs=54.1
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 60 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQ---GETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLN 60 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 48899999999988899999999999 999999999999999999999999887 566554
No 118
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=2e-12 Score=114.51 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=52.4
Q ss_pred EEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~ 62 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEE---GEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVL 62 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 468999999987 7899999999999 999999999999999999999999887 566553
No 119
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.29 E-value=2.7e-12 Score=116.08 Aligned_cols=53 Identities=23% Similarity=0.167 Sum_probs=50.3
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.++
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQ---NQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999988899999999999 99999999999999999999999865
No 120
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.29 E-value=2.4e-12 Score=116.13 Aligned_cols=53 Identities=25% Similarity=0.224 Sum_probs=50.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPK---NQVTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECC---CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 47899999999988899999999999 999999999999999999999999986
No 121
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=2e-12 Score=123.32 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=54.5
Q ss_pred cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.| ++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~ 62 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVAD---GEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIW 62 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcC---CCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEE
Confidence 58999999999 788899999999999 999999999999999999999999988 666553
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=2.4e-12 Score=113.23 Aligned_cols=63 Identities=24% Similarity=0.277 Sum_probs=55.2
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+++++||++.+ | +++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~---g-~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~ 63 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGP---G-MYGLLGPNGAGKTTLMRILATLTPP---SSGTIR---IDGQDV 63 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcC---C-cEEEECCCCCCHHHHHHHHhCCCCC---CccEEE---ECCCcc
Confidence 4689999999888899999999999 9 9999999999999999999999988 577654 456544
No 123
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.29 E-value=2.4e-12 Score=117.15 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=54.0
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~p---~~G~i~ 60 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRP---GEVVAILGPNGAGKSTLLRALSGELSP---DSGEVR 60 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE
Confidence 58899999999988899999999999 999999999999999999999999887 566543
No 124
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.29 E-value=1.8e-12 Score=113.58 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=54.6
Q ss_pred EEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 67 ESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 67 ~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~ 64 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYA---GEIIALTGKNGAGKTTLAKILAGLIKE---SSGSIL---LNGKPI 64 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEEh
Confidence 36799999987 7899999999999 999999999999999999999999988 666654 355544
No 125
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.29 E-value=3.8e-11 Score=102.36 Aligned_cols=149 Identities=17% Similarity=0.260 Sum_probs=85.7
Q ss_pred EcCCCCCHHHHHHHHHhccCCccccchhH-----HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcC-CCeEEecCC
Q 023118 100 VGMMGSGKTTVGEILSDALDYTFADSDKY-----VEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLV-PQQVVATGG 173 (287)
Q Consensus 100 vG~~GsGKSTl~k~La~~l~~~fid~d~~-----ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~-~~~via~gg 173 (287)
+|+|||||||+++.|++.++..|+|+|.+ +.++..|....+. .-..+....+ .+...+... ...|+.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~viv~s~ 76 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDD---DRKPWLQALN-DAAFAMQRTNKVSLIVCSA 76 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChh---hHHHHHHHHH-HHHHHHHHcCCceEEEEec
Confidence 69999999999999999999999999976 3333335443321 1111222222 222222211 222333322
Q ss_pred ceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEE
Q 023118 174 GAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATV 248 (287)
Q Consensus 174 G~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v 248 (287)
.....++.+++ + ..|||++|++++.+|+..|..+ + . .. +-+...+..-+|.... .+.+
T Consensus 77 ---~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~--~--a--~~-------~vl~~Q~~~~ep~~~~e~~~~- 139 (163)
T PRK11545 77 ---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGH--F--F--KT-------QMLVTQFETLQEPGADETDVL- 139 (163)
T ss_pred ---chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCC--C--C--CH-------HHHHHHHHHcCCCCCCCCCEE-
Confidence 12333444543 2 5799999999999999987532 1 1 11 1222223333343322 2232
Q ss_pred eccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 249 SLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 249 ~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
++|++. +++++++.++.++.+
T Consensus 140 ----------~id~~~-~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 140 ----------VVDIDQ-PLEGVVASTIEVIKK 160 (163)
T ss_pred ----------EEeCCC-CHHHHHHHHHHHHHH
Confidence 268875 899999999999865
No 126
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.29 E-value=1.9e-12 Score=113.77 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=54.6
Q ss_pred EEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 67 ESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 67 ~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~---G~~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 65 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKK---GEFVLIVGPNGSGKSTLLRLLNGLLGP---TSGEVL---VDGKDL 65 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEEc
Confidence 36789999987 7899999999999 999999999999999999999999988 667654 355544
No 127
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.29 E-value=2.8e-12 Score=114.29 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=62.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
++++++|++..||..++|+++||++++ |++++|+|+||+||||+++.|+|...+ .+|.+. ++|.+|+..
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~---Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~---~~G~dit~~ 70 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVER---GEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRII---FDGEDITGL 70 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEE---ECCeecCCC
Confidence 479999999999999999999999999 999999999999999999999999999 477765 567777544
No 128
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.28 E-value=2.5e-12 Score=115.23 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=51.9
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~i 129 (287)
++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+ .| ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~ 60 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKK---GEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTIL 60 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEE
Confidence 4689999999988899999999999 9999999999999999999999995 34 566553
No 129
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.28 E-value=3.3e-12 Score=115.96 Aligned_cols=60 Identities=23% Similarity=0.189 Sum_probs=54.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~ 64 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYP---GEVLGIVGESGSGKTTLLNALSARLAP---DAGEVH 64 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE
Confidence 469999999999888899999999999 999999999999999999999999988 566553
No 130
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3e-12 Score=115.74 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=51.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.|
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQ---NGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 468999999999888899999999999 999999999999999999999999876
No 131
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.28 E-value=2.8e-12 Score=117.92 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=50.8
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~laG~~~p 53 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEP---GRVTALLGRNGAGKSTLLKALAGDLTG 53 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 47899999999988999999999999 999999999999999999999999987
No 132
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.9e-12 Score=116.55 Aligned_cols=55 Identities=22% Similarity=0.137 Sum_probs=51.5
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 65 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPR---GKVTALIGPSGCGKSTVLRSLNRMNDL 65 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcC---CCEEEEECCCCCCHHHHHHHHhccccc
Confidence 3579999999999988899999999999 999999999999999999999998763
No 133
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.3e-12 Score=116.06 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=50.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPE---NEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 579999999999988899999999999 99999999999999999999999986
No 134
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.4e-12 Score=115.23 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=50.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 55 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPD---NTITALMGPSGSGKSTLLRVFNRLIEL 55 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 358999999999988899999999999 999999999999999999999999864
No 135
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.28 E-value=5.5e-12 Score=111.40 Aligned_cols=68 Identities=26% Similarity=0.417 Sum_probs=60.8
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
||+.+|++.+..++.+++++||++.+ |+..+|+||||+|||||+|.|+|.+.| ++|.+- ++|.++...
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~p---Gev~ailGPNGAGKSTlLk~LsGel~p---~~G~v~---~~g~~l~~~ 68 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRP---GEVLAILGPNGAGKSTLLKALSGELSP---DSGEVT---LNGVPLNSW 68 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccC---CcEEEEECCCCccHHHHHHHhhCccCC---CCCeEe---eCCcChhhC
Confidence 57899999999999999999999999 999999999999999999999999999 677664 467666543
No 136
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.28 E-value=3.2e-12 Score=116.69 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=53.3
Q ss_pred cEEEcceEEEcC---------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLD---------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~---------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|+ ++.+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~ 69 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEE---GETVGLLGRSGCGKSTLARLLLGLEKP---AQGTVS 69 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence 589999999995 36799999999999 999999999999999999999999987 566553
No 137
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.8e-12 Score=116.43 Aligned_cols=54 Identities=17% Similarity=0.118 Sum_probs=51.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 71 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPE---KTVTAFIGPSGCGKSTFLRCLNRMNDT 71 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 479999999999988899999999999 999999999999999999999999875
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.28 E-value=3.9e-12 Score=116.10 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=54.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|++++|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i 64 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPD---GHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHV 64 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEE
Confidence 468999999999988899999999999 999999999999999999999999987 56654
No 139
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.28 E-value=3.6e-12 Score=115.23 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=54.7
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 61 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYP---GEVLGIVGESGSGKSTLLGCLAGRLAP---DHGTAT 61 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence 368999999999888899999999999 999999999999999999999999988 566553
No 140
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.8e-12 Score=116.32 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=50.6
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEK---HAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcC---CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3579999999999988899999999999 99999999999999999999999764
No 141
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.27 E-value=3e-12 Score=123.95 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=54.7
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|+++.+|+++||++.+ |++++|+||||||||||+|+|+|.+.| ++|.+
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~---Geiv~liGpNGaGKSTLLk~LaGll~p---~sG~I 60 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVRE---GSLVGLVGPNGAGKTTLLRAINGTLTP---TAGTV 60 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECC---CCEEEEECCCCchHHHHHHHHhcCCCC---CCcEE
Confidence 368999999999999999999999999 999999999999999999999999988 56654
No 142
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.9e-12 Score=115.10 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=50.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|+++.|++..+|+|+||++.+ |++++|+||||||||||+++|+|.++
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPK---NRVTALIGPSGCGKSTLLRCFNRMND 57 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECC---CcEEEEECCCCCCHHHHHHHHhcccc
Confidence 479999999999988999999999999 99999999999999999999999876
No 143
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.27 E-value=2.8e-12 Score=112.77 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=55.0
Q ss_pred EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++ +.+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~i 65 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISA---GEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIR---VNGQDV 65 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEEc
Confidence 468999999964 6899999999999 999999999999999999999999887 566654 355544
No 144
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.6e-12 Score=127.10 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=69.8
Q ss_pred ccccccccCCCcCCCCCCCccEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 45 KRHRTLNLVPAHVSKDSNAHDVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.+++....+..+... .....++++||+|.|. +.++|+|+||+++| |+.++||||||+||||++.+|-..+.|
T Consensus 446 dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~p---Ge~vALVGPSGsGKSTiasLL~rfY~P- 520 (716)
T KOG0058|consen 446 DRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRP---GEVVALVGPSGSGKSTIASLLLRFYDP- 520 (716)
T ss_pred ccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCC---CCEEEEECCCCCCHHHHHHHHHHhcCC-
Confidence 344444444222222 3334699999999996 45699999999999 999999999999999999999999999
Q ss_pred cccchhHHHHHhCCCchhhh
Q 023118 122 FADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 122 fid~d~~ie~~~~G~~i~~~ 141 (287)
.+|.+. .+|.+|.++
T Consensus 521 --tsG~Il---lDG~~i~~~ 535 (716)
T KOG0058|consen 521 --TSGRIL---LDGVPISDI 535 (716)
T ss_pred --CCCeEE---ECCeehhhc
Confidence 688776 589998887
No 145
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.27 E-value=4.3e-12 Score=120.15 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=82.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCc------cccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCC
Q 023118 97 LFLVGMMGSGKTTVGEILSDALDYT------FADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVP 165 (287)
Q Consensus 97 i~LvG~~GsGKSTl~k~La~~l~~~------fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~ 165 (287)
++|+|++||||||+++.|+..+... |+|.|+++ +... |.++.++| ..||..-.+.++
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~-~~~~~~~~-----k~~R~~i~~~le------ 69 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQ-SREIPSQW-----KQFRQELLKYLE------ 69 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhc-CCCcHHHH-----HHHHHHHHHHHH------
Confidence 5799999999999999999888744 89999998 5554 88998886 667733222222
Q ss_pred CeEEecCCceEecc------ccH----Hhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcC
Q 023118 166 QQVVATGGGAVVRP------LNW----RFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLD 216 (287)
Q Consensus 166 ~~via~ggG~v~~~------~~~----~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~ 216 (287)
+.|+++|||+++++ ..| ..|+ +|++|||+++++.+..|+.... -.||++.
T Consensus 70 ~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~-Lsrpllv 130 (340)
T TIGR03575 70 HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPA-VSRPLCL 130 (340)
T ss_pred HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHH-HhCCCCc
Confidence 45788999999865 445 6776 4999999999999999997532 2588654
No 146
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=3.4e-12 Score=109.29 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=55.4
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~ 64 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEK---GEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIK---VLGKDI 64 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEc
Confidence 4689999999887899999999999 999999999999999999999999887 566554 355544
No 147
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.27 E-value=3.4e-12 Score=118.83 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=53.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++|++++|++..+|+|+||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~---Gei~~l~G~NGaGKTTLl~~l~Gl~~~---~~G~i 59 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQK---GRIVGFLGPNGAGKSTTMKIITGYLPP---DSGSV 59 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 38899999999999999999999999 999999999999999999999999887 56643
No 148
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=3.1e-12 Score=121.39 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=52.6
Q ss_pred cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|++++|++++|+ +..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~---Gei~~iiG~nGsGKSTLlk~L~Gl~~p---~~G~I 62 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPA---GEIFGVIGASGAGKSTLIRCINLLERP---TSGRV 62 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence 478999999997 46899999999999 999999999999999999999999988 55544
No 149
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.27 E-value=3.7e-12 Score=122.29 Aligned_cols=60 Identities=30% Similarity=0.362 Sum_probs=55.1
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ +.|.+
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~---Ge~~~LlGpsGsGKSTLLr~IaGl~~p---~~G~I 71 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINN---GEFLTLLGPSGCGKTTVLRLIAGFETP---DSGRI 71 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence 3479999999999988899999999999 999999999999999999999999988 56654
No 150
>PRK06547 hypothetical protein; Provisional
Probab=99.27 E-value=4.7e-12 Score=109.15 Aligned_cols=144 Identities=20% Similarity=0.217 Sum_probs=90.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCc-----hhhhhhhhchhhhhhh--HHHHHHH--hhcC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTS-----VAQIFKESGEAYFREY--ESKALQK--LSLV 164 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~-----i~~~~~~~g~~~fr~~--e~~~l~~--l~~~ 164 (287)
-..|+|.|++||||||+++.|+..++..+++.|.++.... +.+ +.+.+...|...++.. ....... ....
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~-~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~ 93 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWH-GLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEP 93 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccc-cCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCC
Confidence 3578888999999999999999999999999998874321 322 2222322343332210 0000000 1112
Q ss_pred CCeEEecCCceEeccccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118 165 PQQVVATGGGAVVRPLNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY 241 (287)
Q Consensus 165 ~~~via~ggG~v~~~~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y 241 (287)
...+|..|.++. .+..+..+.+ | ++|||++|.+.+.+|+..|..+.+|.. +.| ....+.|-...+-.
T Consensus 94 ~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~~~~~~-----~~w----~~~e~~~~~~~~~~ 163 (172)
T PRK06547 94 GRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALARDPDYAPHW-----EMW----AAQEERHFARYDPR 163 (172)
T ss_pred CCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCchhhHHH-----HHH----HHHHHHHHhcCCCh
Confidence 346778888876 4556666653 4 689999999999999998865544332 122 33445555555656
Q ss_pred hhCCeEE
Q 023118 242 ANADATV 248 (287)
Q Consensus 242 ~~ad~~v 248 (287)
+.||++|
T Consensus 164 ~~ad~~~ 170 (172)
T PRK06547 164 DVADWLG 170 (172)
T ss_pred hccEEEe
Confidence 6677776
No 151
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.27 E-value=3.7e-12 Score=122.06 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=53.9
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLL~~iaGl~~p---~~G~I 60 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHE---GEFVVFVGPSGCGKSTLLRMIAGLEDI---TSGDL 60 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence 58999999999988899999999999 999999999999999999999999988 56654
No 152
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.27 E-value=3.7e-12 Score=111.64 Aligned_cols=64 Identities=27% Similarity=0.361 Sum_probs=55.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 64 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAA---GEALQVTGPNGSGKTTLLRILAGLSPP---LAGRVL---LNGGPL 64 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEec
Confidence 4789999999988999999999999 999999999999999999999999988 566554 345443
No 153
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.27 E-value=3.2e-12 Score=111.82 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=53.9
Q ss_pred EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 62 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEK---GKMYAIIGESGSGKSTLLNIIGLLEKF---DSGQVY---LNGKET 62 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEE---ECCEEc
Confidence 47899999988899999999999 999999999999999999999999988 566554 355543
No 154
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.27 E-value=3.3e-12 Score=115.56 Aligned_cols=58 Identities=26% Similarity=0.257 Sum_probs=52.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 58 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAA---GEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQ 58 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 4689999999888899999999999 999999999999999999999999988 566543
No 155
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.27 E-value=3.9e-12 Score=116.54 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=54.5
Q ss_pred CCccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 62 NAHDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 62 ~~~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+.++++++|+++.|+ +..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I 66 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINE---GEYVAILGHNGSGKSTISKILTGLLKP---QSGEI 66 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence 345799999999995 56799999999999 999999999999999999999999987 56654
No 156
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.27 E-value=5.1e-12 Score=116.14 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=52.5
Q ss_pred CCCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 61 SNAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 61 ~~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+.++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~---Ge~~~IiG~nGsGKSTLl~~l~Gl~~~ 72 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPA---KKIIAFIGPSGCGKSTLLRCFNRMNDL 72 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcC---CCEEEEECCCCCCHHHHHHHHhccccc
Confidence 334589999999999988899999999999 999999999999999999999999864
No 157
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=4.5e-12 Score=115.35 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=50.9
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
..+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAK---NQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 3479999999999988899999999999 99999999999999999999999986
No 158
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=3.6e-12 Score=114.57 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=52.5
Q ss_pred EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|++++|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 59 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAK---GEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIF 59 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE
Confidence 468999999987 7899999999999 999999999999999999999999987 566553
No 159
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.26 E-value=4.6e-11 Score=98.15 Aligned_cols=102 Identities=21% Similarity=0.315 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~ 175 (287)
+|+|+|++||||||+++.|+..++.+|++.|.+....... ..... .....++......+.++..... +|..|.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~-~~~~~---~~~~~i~~~l~~~~~~~~~~~~-~Vidg~~~ 75 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGK-LASEV---AAIPEVRKALDERQRELAKKPG-IVLEGRDI 75 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHH-HHHHh---cccHhHHHHHHHHHHHHhhCCC-EEEEeeee
Confidence 4899999999999999999999999999999553222200 00000 0112233333344455554443 33344321
Q ss_pred EeccccHHhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118 176 VVRPLNWRFMR-QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 176 v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
.+..+. ..++|||++|++.+.+|+..+
T Consensus 76 -----~~~~~~~~~~~i~l~~~~~~r~~R~~~r 103 (147)
T cd02020 76 -----GTVVFPDADLKIFLTASPEVRAKRRAKQ 103 (147)
T ss_pred -----eeEEcCCCCEEEEEECCHHHHHHHHHHH
Confidence 111122 258899999999999999863
No 160
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.26 E-value=5.3e-12 Score=114.58 Aligned_cols=59 Identities=17% Similarity=0.194 Sum_probs=54.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.++++|+++.|+++.+++++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~ 63 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANA---GDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIV 63 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE
Confidence 58999999999988999999999999 999999999999999999999999987 566553
No 161
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.7e-12 Score=122.23 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=69.0
Q ss_pred ccccccCCCcCCCCCCCc--cEEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcc
Q 023118 47 HRTLNLVPAHVSKDSNAH--DVESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTF 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~f 122 (287)
......++.|.....+.. .++++|++++|++. ++|+|+||++++ |++|+|+|++||||||++++|++.+.|
T Consensus 316 i~~q~~e~~~~~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~---GEkvAIlG~SGsGKSTllqLl~~~~~~-- 390 (573)
T COG4987 316 ILDQKPEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQ---GEKVAILGRSGSGKSTLLQLLAGAWDP-- 390 (573)
T ss_pred hccCCcccCCCccccCCccceeeeccceeecCCCccchhhccceeecC---CCeEEEECCCCCCHHHHHHHHHhccCC--
Confidence 333444555652223322 68999999999764 599999999999 999999999999999999999999999
Q ss_pred ccchhHHHHHhCCCchhhh
Q 023118 123 ADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 123 id~d~~ie~~~~G~~i~~~ 141 (287)
+.|.+- .+|.++..+
T Consensus 391 -~~G~i~---~~g~~~~~l 405 (573)
T COG4987 391 -QQGSIT---LNGVEIASL 405 (573)
T ss_pred -CCCeee---ECCcChhhC
Confidence 788776 578888766
No 162
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.26 E-value=5.9e-12 Score=113.79 Aligned_cols=53 Identities=21% Similarity=0.119 Sum_probs=50.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQ---NEITALIGPSGCGKSTYLRTLNRMND 56 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 468999999999988899999999999 99999999999999999999999865
No 163
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=4.3e-12 Score=108.46 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=55.8
Q ss_pred EEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 66 VESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 66 l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++|+++.|++. .+++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~---G~~~~l~G~nGsGKstLl~~i~G~~~~---~~G~i~---~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKP---GEKVAIVGPSGSGKSTLLKLLLRLYDP---TSGEIL---IDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEE---ECCEEhh
Confidence 4688999999865 799999999999 999999999999999999999999988 566554 4565543
No 164
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.26 E-value=5.2e-12 Score=115.51 Aligned_cols=54 Identities=20% Similarity=0.148 Sum_probs=51.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++|++++|+++.+|+++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 72 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEK---NKITALIGPSGSGKSTYLRSLNRMNDT 72 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 479999999999988999999999999 999999999999999999999999864
No 165
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.26 E-value=4.4e-12 Score=115.97 Aligned_cols=59 Identities=22% Similarity=0.305 Sum_probs=53.0
Q ss_pred ccEEEcceEEEcCC---------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDG---------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~---------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|++++|+. ..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i 70 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLRE---GQTLAIIGENGSGKSTLAKMLAGMIEP---TSGEL 70 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecC---CCEEEEEcCCCCCHHHHHHHHhCCCCC---CCCEE
Confidence 36899999999962 4699999999999 999999999999999999999999988 56654
No 166
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.26 E-value=4.7e-12 Score=113.94 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=55.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+ .+ ++|.+. ++|.++
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~---~~g~~~ 67 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRP---GEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVE---FKGKDL 67 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHcCCccCCC---CceEEE---ECCCcc
Confidence 47899999999988899999999999 9999999999999999999999995 35 566553 345443
No 167
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.25 E-value=4.9e-12 Score=120.57 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=54.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~ 60 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPS---GQMVALLGPSGSGKTTLLRIIAGLEHQ---TSGHIR 60 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE
Confidence 48899999999988899999999999 999999999999999999999999988 566553
No 168
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.25 E-value=4.7e-12 Score=117.75 Aligned_cols=58 Identities=29% Similarity=0.324 Sum_probs=54.1
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+ .+.+|+++||++++ |++++|+|||||||||++++|+|.+.| ++|.+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~---Gei~gllG~NGAGKTTllk~l~gl~~p---~~G~i 62 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEP---GEIFGLLGPNGAGKTTLLKILAGLLKP---TSGEI 62 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCcCC---CceEE
Confidence 578999999999 69999999999999 999999999999999999999999999 56654
No 169
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.25 E-value=5.3e-12 Score=115.60 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=53.5
Q ss_pred ccEEEcceEEEcC---------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD---------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~---------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|+ ++.+|+|+||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~sG~i 69 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKS---GETVALLGRSGCGKSTLARLLVGLESP---SQGNV 69 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence 3689999999997 47899999999999 999999999999999999999999887 56654
No 170
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.5e-12 Score=113.86 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=53.4
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i 129 (287)
.++++|+++.|++..+++|+||++.+ |++++|+|+||||||||+++|+|.+. |.+.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 66 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEE---NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVL 66 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEE
Confidence 48899999999888899999999999 99999999999999999999999875 3222455543
No 171
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.5e-12 Score=113.79 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=56.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+...++|.+. ++|.++
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~---~~g~~i 69 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQ---NKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVE---IEGKDV 69 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEE---ECCEec
Confidence 57899999999988899999999999 999999999999999999999998753112566553 345444
No 172
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.25 E-value=4.7e-12 Score=120.24 Aligned_cols=58 Identities=17% Similarity=0.144 Sum_probs=52.5
Q ss_pred cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
||+++|+++.|+ ...+|+|+||++.+ |++++|+||||||||||+++|++.+.| ++|.+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~---Gei~gIiG~sGaGKSTLlr~I~gl~~p---~~G~I 62 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPA---GQIYGVIGASGAGKSTLIRCVNLLERP---TSGSV 62 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence 489999999995 24799999999999 999999999999999999999999988 56655
No 173
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.25 E-value=4.5e-12 Score=109.20 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=56.1
Q ss_pred EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
+++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ +.|.+. ++|.++.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~---G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~---~~g~~~~ 64 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEA---GEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEIL---LDGKDLA 64 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEECC
Confidence 468999999888899999999999 999999999999999999999999988 677664 4566553
No 174
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.7e-12 Score=114.43 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=50.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++|++++|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEP---RSVTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 58999999999888899999999999 999999999999999999999999864
No 175
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=9e-12 Score=114.67 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=52.3
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPA---RAVTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCc
Confidence 4579999999999988999999999999 999999999999999999999999875
No 176
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.25 E-value=7.2e-12 Score=113.86 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=54.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~---Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i 61 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKP---GKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVI 61 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 368999999999988899999999999 999999999999999999999999887 55644
No 177
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6.3e-12 Score=114.30 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=51.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLlk~l~Gl~~~ 59 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYR---NKVTAIIGPSGCGKSTFIKTLNRISEL 59 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 468999999999988899999999999 999999999999999999999999875
No 178
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.25 E-value=5.5e-12 Score=115.64 Aligned_cols=59 Identities=25% Similarity=0.274 Sum_probs=53.6
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|+ ++.+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~ 65 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPG---GSIAALVGVNGSGKSTLFKALMGFVRL---ASGKIS 65 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 589999999995 57899999999999 999999999999999999999999987 566553
No 179
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.25 E-value=6.1e-12 Score=113.57 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=50.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 55 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFK---NQITAIIGPSGCGKTTLLRSINRMNDH 55 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecC---CCEEEEECCCCCCHHHHHHHHhccccC
Confidence 68999999999888899999999999 999999999999999999999998874
No 180
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=6.5e-12 Score=114.67 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=54.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC--ccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY--TFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~--~fid~d~~i 129 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+++ .+.++|.+.
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 73 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPK---NQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVT 73 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcC---CCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEE
Confidence 369999999999988899999999999 999999999999999999999998763 222556553
No 181
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=6.6e-12 Score=114.10 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=51.6
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~ 64 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPK---NSVTALIGPSGCGKSTFIRCLNRMNDL 64 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 3579999999999988899999999999 999999999999999999999999875
No 182
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.24 E-value=5.7e-12 Score=114.30 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=52.5
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ +.|.+
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i 58 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPP---GSLTGLLGPNGSGKSTLLRLLAGALRP---DAGTV 58 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCCEE
Confidence 5789999999988999999999999 999999999999999999999999987 45544
No 183
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.24 E-value=5.8e-12 Score=108.25 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=55.2
Q ss_pred EEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++. .+++++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~ 66 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQ---GEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEIT---LDGVPV 66 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEE---ECCEEH
Confidence 4688999999764 799999999999 999999999999999999999999888 566654 456544
No 184
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.24 E-value=6.9e-12 Score=114.14 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=52.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.|.
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHH---GEMVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcC---CcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 379999999999988999999999999 9999999999999999999999999873
No 185
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.24 E-value=7.3e-12 Score=109.16 Aligned_cols=64 Identities=11% Similarity=0.173 Sum_probs=54.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|++++|+++.+++ +||++++ |++++|+|+||||||||+++|+|.+.+ +.|.+. ++|.++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~i 64 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLP---SAITYIKGANGCGKSSLLRMIAGIMQP---SSGNIY---YKNCNI 64 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCccc
Confidence 478999999998766665 9999999 999999999999999999999999988 566554 456554
No 186
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=6.4e-12 Score=111.75 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=56.0
Q ss_pred EEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 66 VESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 66 l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++|+++.|++ ..+++++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+. ++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~~ 68 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKP---GETVAIVGPTGAGKTTLINLLMRFYDP---QKGQIL---IDGIDIR 68 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCEeHH
Confidence 789999999974 5799999999999 999999999999999999999999988 566654 3555443
No 187
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=6.5e-12 Score=111.96 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=62.4
Q ss_pred ccEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 64 HDVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.+|+++|+....+++ .||+++|++|++ |+..+|+||||||||||+..|+|.-+|....++.++ +|.+|.++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~---GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~----~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKE---GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF----DGEDILEL 73 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcC---CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEE----CCcccccC
Confidence 479999999999985 999999999999 999999999999999999999999988766665555 67777664
No 188
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=7e-12 Score=113.23 Aligned_cols=52 Identities=19% Similarity=0.131 Sum_probs=50.0
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+++++|++++|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEE---KELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhhccc
Confidence 58999999999988899999999999 99999999999999999999999986
No 189
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.24 E-value=1.9e-11 Score=105.56 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=88.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
|..++|+|++||||||+++.|++.+. ..++++|.+-..+..+.... .......++.. ..+.+.+......|
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~G~~V 93 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFS---EEDRKENIRRI-GEVAKLFVRNGIIV 93 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCC---HHHHHHHHHHH-HHHHHHHHcCCCEE
Confidence 89999999999999999999999872 35678887654332211111 01111222211 12233333333444
Q ss_pred EecCCceEeccccHHhhc----C--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118 169 VATGGGAVVRPLNWRFMR----Q--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA 242 (287)
Q Consensus 169 ia~ggG~v~~~~~~~~L~----~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~ 242 (287)
|...- -.....+..++ . -++|||++|++.+.+| ..+|++..... +.+..+...+.++|.
T Consensus 94 I~d~~--~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R------~~~~l~~~~~~-------~~~~~l~~~~~~y~~ 158 (184)
T TIGR00455 94 ITSFI--SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR------DPKGLYKKARN-------GEIKGFTGIDSPYEA 158 (184)
T ss_pred EEecC--CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh------CchhHHHHHhc-------CCccCcccccCCCCC
Confidence 44321 11112222222 2 2569999999999999 12565532111 123334445666664
Q ss_pred -h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 243 -N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 243 -~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
. +|++| ||++.++++++++|++.+
T Consensus 159 p~~adl~I------------dt~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 159 PENPEVVL------------DTDQNDREECVGQIIEKL 184 (184)
T ss_pred CCCCcEEE------------ECCCCCHHHHHHHHHHhC
Confidence 3 77765 888999999999998753
No 190
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.24 E-value=7.5e-12 Score=113.17 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=49.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.++++|++++|++..+|+|+||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPE---NSVTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 48999999999888899999999999 99999999999999999999999985
No 191
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.24 E-value=8.4e-12 Score=112.66 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=49.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|+++.|++..+++++||++.+ |++++|+||||||||||+++|+|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYP---NEITALIGPSGSGKSTLLRSINRMND 56 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhcccc
Confidence 368999999999988899999999999 99999999999999999999999853
No 192
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=6.5e-12 Score=115.43 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=52.0
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+ +..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| +.|.+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 59 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKK---GEYIGIIGKNGSGKSTLALHLNGLLRP---QKGKV 59 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence 478999999995 56799999999999 999999999999999999999999887 45543
No 193
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.23 E-value=7.1e-12 Score=111.27 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=52.2
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| +.|.+
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i 57 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPK---NSVYGLLGPNGAGKSTLLKMITGILRP---TSGEI 57 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 4689999999988899999999999 999999999999999999999999887 56644
No 194
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.23 E-value=8.4e-12 Score=114.45 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=50.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHE---NEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 479999999999888899999999999 99999999999999999999999986
No 195
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.23 E-value=1.2e-11 Score=110.01 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=58.0
Q ss_pred CccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 63 AHDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
..+++++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~~ 79 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHP---GEVTALVGPSGSGKSTVVALLENFYQP---QGGQVL---LDGKPIS 79 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEE---ECCCchH
Confidence 357999999999974 4699999999999 999999999999999999999999988 566654 4565543
No 196
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=7e-12 Score=115.23 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=52.8
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+ ...+|+|+||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 62 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPE---GSKTALLGPNGAGKSTLLLHLNGIYLP---QRGRV 62 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CceEE
Confidence 689999999996 56799999999999 999999999999999999999999987 45544
No 197
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.23 E-value=8e-12 Score=112.80 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=52.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~i 129 (287)
+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.. .+ +.|.+.
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~ 67 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINK---GEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDIL 67 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcC---CcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEE
Confidence 69999999999888899999999999 9999999999999999999999973 44 566553
No 198
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=9e-12 Score=112.43 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=53.9
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i 129 (287)
+++++|+++.|+++.+++++||++.+ |++++|+|+||||||||+++|+|.++ +.+.++|.+.
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~ 66 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPK---NSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIY 66 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEE
Confidence 58899999999988899999999999 99999999999999999999999875 3223566543
No 199
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.23 E-value=1.2e-11 Score=109.77 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=52.4
Q ss_pred cEEEcceEEEcCC-------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDG-------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~-------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|+. ..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~ 66 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNA---GECVALSGPSGAGKSTLLKSLYANYLP---DSGRIL 66 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEE
Confidence 4789999999962 4799999999999 999999999999999999999999988 556543
No 200
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.23 E-value=7e-12 Score=107.38 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=55.6
Q ss_pred EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++|++++|++ ..+++++||++.+ |+.++|+||||||||||+++|+|.+.| ++|.+. ++|.++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEP---GESLAIIGPSGSGKSTLARLILGLLRP---TSGRVR---LDGADIS 67 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEE---ECCEEcc
Confidence 468999999975 5699999999999 999999999999999999999999988 566654 4565543
No 201
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.23 E-value=9.6e-12 Score=110.30 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=56.9
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
+++++|+++.|+. ..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+. ++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~---G~~~~I~G~nGsGKStLl~~l~G~~~~---~~G~i~---~~g~~~~ 70 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINP---GEIVILTGPSGSGKTTLLTLIGGLRSV---QEGSLK---VLGQELY 70 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEhH
Confidence 3789999999974 6799999999999 999999999999999999999999887 566654 4566553
No 202
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.23 E-value=8.5e-12 Score=117.77 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=53.6
Q ss_pred ccEEEcceEEEc----CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcc-ccchhHH
Q 023118 64 HDVESGTFCDSL----DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTF-ADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~----~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~f-id~d~~i 129 (287)
++|+++|+++.| +...+|+++||+|.+ |++++|+|+||||||||+++|+|.+.++. .++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~---Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~ 69 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTE---GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR 69 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE
Confidence 368999999999 456799999999999 99999999999999999999999986421 2555543
No 203
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.5e-11 Score=111.35 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=51.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNINIKILK---NSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred ceEEEeeeEEEeCCceeecceeeEEcC---CCEEEEECCCCCCHHHHHHHHhccccC
Confidence 479999999999888899999999999 999999999999999999999999876
No 204
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=9.2e-12 Score=112.47 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|..+
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEE---KSVVAFIGPSGCGKSTFLRLFNRMND 54 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeC---CCEEEEECCCCCCHHHHHHHHhhhhc
Confidence 468999999999988899999999999 99999999999999999999999743
No 205
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=7.1e-12 Score=110.07 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=56.6
Q ss_pred ccEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+.+.++|++|.|. +..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+...++|.+. ++|.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~---i~g~~~ 74 (202)
T cd03233 2 STLSWRNISFTTGKGRSKIPILKDFSGVVKP---GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIH---YNGIPY 74 (202)
T ss_pred ceEEEEccEEEeccCCCCceeeeeEEEEECC---CcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEE---ECCEEC
Confidence 4578999999994 56799999999999 999999999999999999999999883112566554 355544
No 206
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.22 E-value=8.3e-12 Score=109.39 Aligned_cols=65 Identities=23% Similarity=0.363 Sum_probs=55.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCchh
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+ .| +.|.+. ++|.++.
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~---~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKK---GEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEIL---FKGEDIT 67 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECC---CcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEE---ECCEECC
Confidence 4689999999888899999999999 9999999999999999999999995 45 566554 3565543
No 207
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=8.2e-12 Score=114.85 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=53.0
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|++++|+ ...+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i 61 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPR---NSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSV 61 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence 3589999999995 56799999999999 999999999999999999999999988 56654
No 208
>PRK08356 hypothetical protein; Provisional
Probab=99.22 E-value=4.4e-10 Score=98.18 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCC--------------chhhhhhhhchhhhhh---hH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGT--------------SVAQIFKESGEAYFRE---YE 154 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~--------------~i~~~~~~~g~~~fr~---~e 154 (287)
...|+|+||+||||||+++.|.. .+...+..++.+.... .+. +..++. +.|. ..+. .+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~-e~g~-~~~~~yG~~ 81 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLI-ELGR-YLKEKYGED 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHH-HHHH-HHHHhcCcH
Confidence 45789999999999999999975 7888888886431110 010 001110 0010 0110 11
Q ss_pred ---HHHHHHhhcCCCeEEecCCceEeccccHHhhcC--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHH
Q 023118 155 ---SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTA 229 (287)
Q Consensus 155 ---~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~ 229 (287)
..+++.+.... .++-.|- .+..+++.|.+ +.+|||++|++.+.+|+..|+...+|+... .+.
T Consensus 82 ~~~~~~~~~~~~~~-~ividG~---r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~---------~e~ 148 (195)
T PRK08356 82 ILIRLAVDKKRNCK-NIAIDGV---RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKS---------FED 148 (195)
T ss_pred HHHHHHHHHhccCC-eEEEcCc---CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCcccccccc---------HHH
Confidence 11223332112 3444432 33344444543 689999999999999998876544444321 244
Q ss_pred HHHHHHHHHhhhh-----h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 230 LSALSKERSEAYA-----N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 230 l~~l~~~R~~~Y~-----~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+.+++..+..+|. + ||++| ++ +.++++++.+|...+..+
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~aD~vI------------~N-~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 149 FLKFDEWEEKLYHTTKLKDKADFVI------------VN-EGTLEELRKKVEEILREL 193 (195)
T ss_pred HHHHHHHHHHhhhhhhHHHhCcEEE------------EC-CCCHHHHHHHHHHHHHHh
Confidence 5566555554443 3 78876 23 358999999999888765
No 209
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=9.1e-12 Score=123.63 Aligned_cols=54 Identities=24% Similarity=0.298 Sum_probs=51.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|++++|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRA---GEIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 479999999999988899999999999 999999999999999999999999876
No 210
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=1.3e-11 Score=118.69 Aligned_cols=59 Identities=20% Similarity=0.297 Sum_probs=54.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|||.+.+ +.|.+
T Consensus 18 ~~l~l~~v~~~~~~~~~l~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I 76 (377)
T PRK11607 18 PLLEIRNLTKSFDGQHAVDDVSLTIYK---GEIFALLGASGCGKSTLLRMLAGFEQP---TAGQI 76 (377)
T ss_pred ceEEEEeEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEE
Confidence 469999999999988899999999999 999999999999999999999999988 56654
No 211
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.22 E-value=9.8e-12 Score=109.93 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=55.4
Q ss_pred EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++ ..+++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~---G~~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~ 68 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRA---GEKVAIIGRVGSGKSTLLKLLAGLYKP---TSGSVL---LDGTDI 68 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCeEE---ECCEEh
Confidence 789999999975 5799999999999 999999999999999999999999887 566654 355544
No 212
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=8.2e-12 Score=114.26 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=53.5
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|++ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~---Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~ 67 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPK---GQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIF 67 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE
Confidence 46999999999975 4599999999999 999999999999999999999999987 566553
No 213
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=8.9e-12 Score=114.52 Aligned_cols=58 Identities=24% Similarity=0.227 Sum_probs=52.2
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+ ...+++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i 59 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEK---GEMVALLGPNGAGKSTLFLHFNGILKP---TSGEV 59 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEE
Confidence 478999999996 46799999999999 999999999999999999999999887 45544
No 214
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.22 E-value=1e-11 Score=123.48 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=54.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~Gl~~p---~~G~i 68 (510)
T PRK15439 10 PLLCARSISKQYSGVEVLKGIDFTLHA---GEVHALLGGNGAGKSTLMKIIAGIVPP---DSGTL 68 (510)
T ss_pred ceEEEEeEEEEeCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 479999999999988899999999999 999999999999999999999999987 56654
No 215
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=8.2e-12 Score=111.41 Aligned_cols=64 Identities=28% Similarity=0.426 Sum_probs=55.0
Q ss_pred EEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++. .+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~ 66 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPA---GETVALVGPSGSGKSTLVNLIPRFYDV---DSGRIL---IDGHDV 66 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhccccC---CCCEEE---ECCEEh
Confidence 4689999999765 799999999999 999999999999999999999999988 566654 345444
No 216
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.22 E-value=9.4e-12 Score=123.89 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=59.6
Q ss_pred cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||+++|++ ..+|+|+||++++ |+.++|+||||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~---G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~---i~g~~i~~~ 402 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPP---GERVAILGPSGSGKSTLLMLLTGLLDP---LQGEVT---LDGVSVSSL 402 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEhhhH
Confidence 4899999999975 5699999999999 999999999999999999999999999 577665 477776544
No 217
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.22 E-value=9.2e-12 Score=123.64 Aligned_cols=59 Identities=22% Similarity=0.230 Sum_probs=54.7
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|+++.+++|+||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~---Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~i 62 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYP---GEIHALLGENGAGKSTLMKVLSGIHEP---TKGTI 62 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCcCC---CccEE
Confidence 469999999999988899999999999 999999999999999999999999987 56655
No 218
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.1e-11 Score=126.49 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=53.9
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+|.++|++++|+++.+|+++||+|.+ |++++|+||||||||||+++|+|.+.| |+|.+
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~---Ge~v~LvG~NGsGKSTLLkiL~G~~~p---d~G~I 58 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINP---GQKVGLVGKNGCGKSTLLALLKNEISA---DGGSY 58 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence 47899999999999999999999999 999999999999999999999999887 56654
No 219
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.22 E-value=1.2e-11 Score=111.82 Aligned_cols=54 Identities=22% Similarity=0.162 Sum_probs=50.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYE---NKITALIGPSGCGKSTFLRCLNRMNDL 56 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCc
Confidence 578999999999888899999999999 999999999999999999999998764
No 220
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.4e-11 Score=113.07 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=51.5
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~---Ge~~~I~G~nGsGKSTLl~~laGl~~~ 77 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPK---NRVTAFIGPSGCGKSTLLRCFNRMNDL 77 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3479999999999888899999999999 999999999999999999999999764
No 221
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=8.9e-12 Score=115.30 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=51.8
Q ss_pred cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++|+++.|+. +.+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~l~Gl~~p---~~G~i 64 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIED---GEFVGLIGHTGSGKSTLIQHLNGLLKP---TSGKI 64 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CccEE
Confidence 3889999999974 4699999999999 999999999999999999999999987 45544
No 222
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.21 E-value=1.2e-11 Score=114.30 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=51.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+
T Consensus 38 ~~l~i~~l~~~~~~~~il~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 91 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDVSMDIPE---NQVTAMIGPSGCGKSTFLRCINRMNDL 91 (285)
T ss_pred ceEEEEEEEEEECCEeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 479999999999888899999999999 999999999999999999999999873
No 223
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.21 E-value=9.5e-12 Score=108.60 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=55.8
Q ss_pred cEEEcceEEEcCC------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCC
Q 023118 65 DVESGTFCDSLDG------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGT 136 (287)
Q Consensus 65 ~l~~~~l~~~~~~------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~ 136 (287)
.++++|+++.|+. ..+++++||++.+ |++++|+||||||||||+++|+|.+ .+ ++|.+. ++|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~---Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~---~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKP---GELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVL---INGR 73 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEE---ECCE
Confidence 4789999999975 6799999999999 9999999999999999999999999 77 566554 3555
Q ss_pred ch
Q 023118 137 SV 138 (287)
Q Consensus 137 ~i 138 (287)
++
T Consensus 74 ~~ 75 (194)
T cd03213 74 PL 75 (194)
T ss_pred eC
Confidence 44
No 224
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1e-11 Score=114.60 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=52.9
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+ ++.+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGaGKSTLl~~i~Gl~~p---~~G~i 63 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKK---GEVTAILGGNGAGKSTLFQNLNGILKP---SSGRI 63 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CccEE
Confidence 699999999996 57899999999999 999999999999999999999999987 45543
No 225
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.21 E-value=9.9e-12 Score=123.20 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=54.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|++++|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p---~~G~i 61 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYP---GRVMALVGENGAGKSTMMKVLTGIYTR---DAGSI 61 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcC---CeEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence 369999999999988899999999999 999999999999999999999999988 56654
No 226
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=9.9e-12 Score=114.95 Aligned_cols=58 Identities=24% Similarity=0.209 Sum_probs=52.0
Q ss_pred cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+. ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i 64 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEE---GSFVALVGHTGSGKSTLMQHFNALLKP---SSGTI 64 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEE
Confidence 4789999999973 4699999999999 999999999999999999999999988 55543
No 227
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.21 E-value=1.2e-11 Score=116.75 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=57.9
Q ss_pred CccEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 63 AHDVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 63 ~~~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
.++++++|+++.|+ ...+|+++||++.+ |++++|+|+||||||||+++|+|.+.+..+.+|.+. ++|.++
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~---~~G~~i 83 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRA---GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT---FNGREI 83 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE---ECCEEC
Confidence 35799999999994 36799999999999 999999999999999999999999987433366553 345444
No 228
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.21 E-value=1.1e-11 Score=107.08 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=55.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++++|+++.| +++++||++++ |++++|+|+||||||||+++|+|.+.+ ++|.+. ++|.++.
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~---G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~~ 65 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRA---GEIVGIAGLVGNGQTELAEALFGLRPP---ASGEIT---LDGKPVT 65 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEECC
Confidence 368999999998 89999999999 999999999999999999999999988 567654 4565543
No 229
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1e-11 Score=114.23 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=51.5
Q ss_pred EEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++|+++.|++ ..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i 64 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIED---GSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSV 64 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 789999999974 3699999999999 999999999999999999999999887 55554
No 230
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=9.9e-12 Score=114.57 Aligned_cols=59 Identities=22% Similarity=0.283 Sum_probs=53.1
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|+. +.+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGaGKSTLl~~i~G~~~p---~~G~i 64 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYE---GEWVAIVGHNGSGKSTLAKLLNGLLLP---EAGTI 64 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEE
Confidence 36999999999964 5699999999999 999999999999999999999999988 45544
No 231
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.21 E-value=1.5e-11 Score=102.69 Aligned_cols=58 Identities=28% Similarity=0.421 Sum_probs=52.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|++..+++++||++++ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~---Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~ 58 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINP---GDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVT 58 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEE
Confidence 4688999999877899999999999 999999999999999999999999988 565543
No 232
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.1e-11 Score=116.94 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=49.7
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+|+++|+++.|+. ..+|+|+||++.+ |++++|+|+||||||||+++|+|++.+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~lvG~sGsGKSTL~~~l~Gll~~ 59 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQ---GEVVGIVGESGSGKSVSSLAIMGLIDY 59 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 6899999999975 5799999999999 999999999999999999999999874
No 233
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1.2e-11 Score=116.66 Aligned_cols=60 Identities=17% Similarity=0.142 Sum_probs=53.4
Q ss_pred ccEEEcceEEEcC----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLD----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++|+++|+++.|+ ...+|+++||+|.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~IvG~sGsGKSTLl~~l~gl~~p---~~G~i~ 73 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLER---GKTLAVVGESGCGKSTLARLLTMIETP---TGGELY 73 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHHcCCCC---CCcEEE
Confidence 5799999999995 25799999999999 999999999999999999999999987 466553
No 234
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=1.4e-11 Score=107.25 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=52.2
Q ss_pred ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC-ccccchhHH
Q 023118 64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY-TFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~-~fid~d~~i 129 (287)
+.++++|+++.|+. +.+++++||++.+ |++++|+||||||||||+++|+|.+.+ + +.|.+.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~--~~G~i~ 67 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKP---GTLTALMGESGAGKTTLLDVLAGRKTAGV--ITGEIL 67 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEccEEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCcCCC--cceEEE
Confidence 46899999999974 6799999999999 999999999999999999999997531 2 556543
No 235
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=1e-11 Score=114.97 Aligned_cols=58 Identities=24% Similarity=0.210 Sum_probs=51.9
Q ss_pred cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|++++|+++.|+. +.+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~---Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 63 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKK---GSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKV 63 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCcEE
Confidence 4889999999963 2599999999999 999999999999999999999999988 56644
No 236
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=1.1e-11 Score=110.77 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=52.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+.++|++++|+++.+++++||++.+ |++++|+|+||||||||+++|+|.+.+ +.|.+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~g~~~~---~~G~i 57 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKE---GEFFTLLGPSGCGKTTLLRLIAGFETP---TSGEI 57 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence 4689999999988999999999999 999999999999999999999999988 55644
No 237
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.21 E-value=1.2e-11 Score=118.38 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=50.5
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.|
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p 57 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEA---GELLALIGKSGCGKTTLLRAIAGFVKA 57 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7899999999988899999999999 999999999999999999999999988
No 238
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.20 E-value=2.4e-11 Score=109.27 Aligned_cols=55 Identities=25% Similarity=0.281 Sum_probs=53.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
++|+++|++..|+++.+|+|+|++|++ |++.+|+||||||||||++++++.+.|.
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~---ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNP---GEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecC---CCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 579999999999999999999999999 9999999999999999999999999884
No 239
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.20 E-value=1.7e-11 Score=121.18 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=53.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~G~~~p---~~G~i 60 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNA---GDSWAFVGANGSGKSALARALAGELPL---LSGER 60 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCceE
Confidence 69999999999888899999999999 999999999999999999999999987 55554
No 240
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.2e-11 Score=109.82 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=51.0
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|.+.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 2 NKFNIENLDLFYGENQALKSINLPIPA---RQVTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred CeEEEeccEEEECCeeeeecceEEecC---CCEEEEECCCCCCHHHHHHHHHhhccc
Confidence 368999999999988899999999999 999999999999999999999998875
No 241
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.20 E-value=2.5e-11 Score=110.69 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=58.8
Q ss_pred ccEEEcceEEEcCC---------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC
Q 023118 64 HDVESGTFCDSLDG---------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG 134 (287)
Q Consensus 64 ~~l~~~~l~~~~~~---------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~ 134 (287)
++++++|+++.|.. ..+++++||++.+ |+.++|||.|||||||++|+|.+++.| .+|.++ +.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~---ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~---f~ 73 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKE---GETLGLVGESGCGKSTLGRLILGLEEP---TSGEIL---FE 73 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcC---CCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEE---Ec
Confidence 47899999999842 4799999999999 999999999999999999999999999 566665 46
Q ss_pred CCchhhh
Q 023118 135 GTSVAQI 141 (287)
Q Consensus 135 G~~i~~~ 141 (287)
|.++..+
T Consensus 74 g~~i~~~ 80 (268)
T COG4608 74 GKDITKL 80 (268)
T ss_pred Ccchhhc
Confidence 7665443
No 242
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.20 E-value=1.2e-11 Score=110.68 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=54.7
Q ss_pred EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|+. ..+++++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~ 66 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKP---GEVVGIVGRSGSGKSTLTKLIQRFYVP---ENGRVL---VDGHDL 66 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCeeh
Confidence 468999999963 5799999999999 999999999999999999999999988 566654 355544
No 243
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.2e-11 Score=114.46 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=52.0
Q ss_pred cEEEcceEEEcCCe-----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGK-----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~-----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++|+++.|++. .+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i 68 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKK---NKVTCVIGTTGSGKSTMIQLTNGLIIS---ETGQT 68 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence 58999999999754 499999999999 999999999999999999999999987 45544
No 244
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.20 E-value=1.8e-11 Score=104.31 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=51.7
Q ss_pred EEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++|+++.|+ ++.+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~ 59 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKP---GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIG 59 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE
Confidence 46889999995 46799999999999 999999999999999999999999988 566553
No 245
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.20 E-value=1.3e-11 Score=126.75 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=58.8
Q ss_pred cEEEcceEEEcCCe--eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDGK--WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~~--~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|+.. .+|+|+|+++++ |+.|+|+|+||||||||+|+|.|.+.| ..|.+. .+|.++.++
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~---Ge~vaIvG~SGsGKSTL~KLL~gly~p---~~G~I~---~dg~dl~~i 540 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPP---GEKVAIVGRSGSGKSTLLKLLLGLYKP---QQGRIL---LDGVDLNDI 540 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEeHHhc
Confidence 59999999999744 699999999999 999999999999999999999999999 466654 366666554
No 246
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.3e-11 Score=113.72 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=53.0
Q ss_pred ccEEEcceEEEcCC------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDG------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|++++|++ +.+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i 67 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKK---GEFLVILGRNGSGKSTIAKHMNALLIP---SEGKV 67 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence 36999999999963 4699999999999 999999999999999999999999987 56644
No 247
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=2.5e-11 Score=109.57 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=50.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++|+++.|++..+++++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQR---GTVNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 58899999999988999999999999 999999999999999999999999876
No 248
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.2e-11 Score=114.22 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=51.8
Q ss_pred cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++|+++.|++ ..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~L~Gl~~p---~~G~i 64 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQ---GKYYAIVGQTGSGKSTLIQNINALLKP---TTGTV 64 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEE
Confidence 3789999999963 3699999999999 999999999999999999999999988 45544
No 249
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.20 E-value=4e-10 Score=96.66 Aligned_cols=155 Identities=17% Similarity=0.178 Sum_probs=83.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccc--cchhHHHHHhCCCchh--hhhhhhc------h----hhhhhhHHHHHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA--DSDKYVEKLMGGTSVA--QIFKESG------E----AYFREYESKALQ 159 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi--d~d~~ie~~~~G~~i~--~~~~~~g------~----~~fr~~e~~~l~ 159 (287)
|..|.|.|++||||||+++.|+..++..|+ +.|.++.... +.... +-+...+ + ..+... ...+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~ 79 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALP-LKCQDAEGGIEFDGDGGVSPGPEFRLLEGAW-YEAVA 79 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcC-hhhcccccccccCccCCcccchHHHHHHHHH-HHHHH
Confidence 789999999999999999999999877664 7777764321 11000 0000000 1 112211 12233
Q ss_pred HhhcCCCeEEecCC-c-eEeccccHHhhcC--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 160 KLSLVPQQVVATGG-G-AVVRPLNWRFMRQ--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 160 ~l~~~~~~via~gg-G-~v~~~~~~~~L~~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
.+......||.... . .-.....+..+.. -..|||++|.+++.+|+..|+.. .| .+ ....++
T Consensus 80 ~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~-~~--------~~------~~~~~~ 144 (175)
T cd00227 80 AMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDR-VP--------GQ------ARKQAR 144 (175)
T ss_pred HHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCc-cc--------hH------HHHHHH
Confidence 34333334444321 1 1111111222222 35799999999999999876522 11 01 001111
Q ss_pred HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
.-.+ ....|+. |||++.|++|++++|++.+
T Consensus 145 ~~~~-~~~~dl~------------iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 145 VVHA-GVEYDLE------------VDTTHKTPIECARAIAARV 174 (175)
T ss_pred HhcC-CCcceEE------------EECCCCCHHHHHHHHHHhc
Confidence 1111 1123443 5999999999999999876
No 250
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.20 E-value=1.7e-11 Score=107.39 Aligned_cols=58 Identities=26% Similarity=0.300 Sum_probs=51.8
Q ss_pred EEEcceEEEcCCe-----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGK-----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~-----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++||++.|+.. .+|+++||++++ |++++|+||||||||||+++|+|.+.+ ++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~---G~~~~i~G~nG~GKSTLl~~i~G~~~~---~~G~i~ 63 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPK---GELVAIVGPVGSGKSSLLSALLGELEK---LSGSVS 63 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhCcCCC---CCCeEE
Confidence 4689999999753 699999999999 999999999999999999999999887 566553
No 251
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.20 E-value=1.6e-11 Score=113.68 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=59.6
Q ss_pred cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
|+++++|+|.|.. ..+++|+||+|++ |++++|||.||+|||||+|++.++..| ++|.++ .+|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~---GeI~GIIG~SGAGKSTLiR~iN~Le~P---tsG~v~---v~G~di~ 71 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPK---GEIFGIIGYSGAGKSTLLRLINLLERP---TSGSVF---VDGQDLT 71 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcC---CcEEEEEcCCCCcHHHHHHHHhccCCC---CCceEE---EcCEecc
Confidence 5899999999975 5799999999999 999999999999999999999999999 677775 4676665
Q ss_pred hh
Q 023118 140 QI 141 (287)
Q Consensus 140 ~~ 141 (287)
.+
T Consensus 72 ~l 73 (339)
T COG1135 72 AL 73 (339)
T ss_pred cC
Confidence 54
No 252
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.20 E-value=1.3e-11 Score=110.79 Aligned_cols=57 Identities=26% Similarity=0.333 Sum_probs=51.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ +.|.+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i 57 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPT---GSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRI 57 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence 4689999999988999999999999 999999999999999999999999877 45543
No 253
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=1.4e-11 Score=113.47 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=52.3
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+. ..+|+|+||++.+ |++++|+|+||||||||+++|+|.+.| +.|.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 64 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQ---GEWLSIIGHNGSGKSTTVRLIDGLLEA---ESGQI 64 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEE
Confidence 6899999999963 4599999999999 999999999999999999999999987 55544
No 254
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.19 E-value=1.5e-11 Score=108.81 Aligned_cols=65 Identities=20% Similarity=0.253 Sum_probs=55.6
Q ss_pred EEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 66 VESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 66 l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++|++++|++ +.+++++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+. ++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKP---GEKVGIVGRTGSGKSSLLLALFRLVEL---SSGSIL---IDGVDIS 69 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCCEEE---ECCEEhH
Confidence 789999999963 4799999999999 999999999999999999999999888 566554 3555443
No 255
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.19 E-value=1.5e-11 Score=111.56 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=52.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc-cchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA-DSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi-d~d~~ 128 (287)
+++++|++++| +..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+.+. ++|.+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i 64 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQR---GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV 64 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE
Confidence 58999999999 56799999999999 999999999999999999999999877321 45544
No 256
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.19 E-value=1.7e-11 Score=125.11 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=54.3
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++|+++|++++|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| |+|.+
T Consensus 2 ~~l~i~~ls~~~~~~~il~~is~~i~~---Ge~v~LvG~NGsGKSTLLriiaG~~~p---~~G~I 60 (635)
T PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIED---NERVCLVGRNGAGKSTLMKILNGEVLL---DDGRI 60 (635)
T ss_pred cEEEEeeEEEEeCCceeEeCcEEEECC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCeEE
Confidence 369999999999988999999999999 999999999999999999999999887 55554
No 257
>PRK14531 adenylate kinase; Provisional
Probab=99.19 E-value=9.2e-10 Score=95.20 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=86.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhhh---hhchhhhhhhHHHHHH-Hhhc-CCCeE
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIFK---ESGEAYFREYESKALQ-KLSL-VPQQV 168 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~~---~~g~~~fr~~e~~~l~-~l~~-~~~~v 168 (287)
..|+|+||+||||||+++.||..++..++++|+++.+.. .+.++..... ..|...--..-..++. .+.. ....+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g~ 82 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGGW 82 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCcE
Confidence 469999999999999999999999999999999887654 2333322111 2222110000011111 2211 11112
Q ss_pred EecCC-ceEeccccHH-hhc----C-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh--
Q 023118 169 VATGG-GAVVRPLNWR-FMR----Q-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE-- 239 (287)
Q Consensus 169 ia~gg-G~v~~~~~~~-~L~----~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~-- 239 (287)
|-.|- ........+. .+. . ..+|||++|++++.+|+..|+ |+ . +..+.. ..++..-.+...|
T Consensus 83 ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~---r~--d-D~~e~i---~~Rl~~y~~~~~pv~ 153 (183)
T PRK14531 83 LLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG---RA--D-DNEAVI---RNRLEVYREKTAPLI 153 (183)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC---CC--C-CCHHHH---HHHHHHHHHHHHHHH
Confidence 22221 1111111111 111 1 468999999999999998764 21 1 111111 1233222223333
Q ss_pred -hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 240 -AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 240 -~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
.|..-+..+ .||.+ -++++|..+|.+.+
T Consensus 154 ~~y~~~~~~~----------~id~~-~~~~~v~~~i~~~l 182 (183)
T PRK14531 154 DHYRQRGLLQ----------SVEAQ-GSIEAITERIEKVL 182 (183)
T ss_pred HHHHhcCCEE----------EEECC-CCHHHHHHHHHHHh
Confidence 444333323 25665 48999999988764
No 258
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=2e-11 Score=111.14 Aligned_cols=55 Identities=18% Similarity=0.261 Sum_probs=52.3
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.++++++|++++|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~iaG~~~~ 62 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPN---NSIFGIMGPSGSGKSTLLKVLNRLIEI 62 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3579999999999999999999999999 999999999999999999999999887
No 259
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=1.9e-11 Score=113.04 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=51.0
Q ss_pred CCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 62 NAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 62 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+.++++++|+++.|++..+|+|+||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 90 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILS---KYVTAIIGPSGCGKSTFLRAINRMND 90 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 44579999999999888899999999999 99999999999999999999999764
No 260
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.7e-11 Score=115.33 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=53.5
Q ss_pred ccEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|++ ..+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~---Ge~~~I~G~nGsGKSTLl~~L~Gl~~p---~~G~I~ 84 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEK---NKIYFIIGNSGSGKSTLVTHFNGLIKS---KYGTIQ 84 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeEE
Confidence 47999999999974 3599999999999 999999999999999999999999988 456543
No 261
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.19 E-value=1.3e-11 Score=110.48 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=54.3
Q ss_pred EEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++ ..+|+++||++++ |++++|+|+||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~ 67 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPP---GKTVALVGSSGCGKSTVVSLLERFYDP---TSGEIL---LDGVDI 67 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecC---CCEEEEEeCCCCCHHHHHHHHhccCCC---CCCEEE---ECCEeh
Confidence 468999999963 4699999999999 999999999999999999999999987 566554 345444
No 262
>PRK13808 adenylate kinase; Provisional
Probab=99.19 E-value=9.2e-10 Score=103.92 Aligned_cols=170 Identities=16% Similarity=0.159 Sum_probs=94.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHH-HhhcCCCeEE
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQ-KLSLVPQQVV 169 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~-~l~~~~~~vi 169 (287)
+|+|+||+||||||+++.|+..+++.+++.|+++...+ . |..+.+++.. |...--+.-..++. .+....
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~---- 76 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPD---- 76 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhccc----
Confidence 58999999999999999999999999999999987653 1 2222333221 21111111111222 222111
Q ss_pred ecCCceEec--cccHH-------hhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCC-cCCCCcchhhHHHHHHHHHH
Q 023118 170 ATGGGAVVR--PLNWR-------FMR-----QGITVFLNVPLDALARRIAAVGTDSFPL-LDYDSADSYTKAFTALSALS 234 (287)
Q Consensus 170 a~ggG~v~~--~~~~~-------~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPl-l~~~~~~~~~~~~~~l~~l~ 234 (287)
+..|.|++ |.+.. +|. -.++|||++|++++.+|+..|....+.- ......+..+....+| +.|
T Consensus 77 -~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL-~~Y 154 (333)
T PRK13808 77 -AANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRL-ASY 154 (333)
T ss_pred -ccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHH-HHH
Confidence 12233333 33311 121 2579999999999999998752110000 0000011111112233 333
Q ss_pred HHH----HhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 235 KER----SEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 235 ~~R----~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.+. ...|...+..+. ||.+ .++++|.++|...|..++.
T Consensus 155 ~~~t~PLl~~Y~e~~~lv~----------IDa~-~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 155 RAQTEPLVHYYSEKRKLLT----------VDGM-MTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HHHhHHHHHHhhccCcEEE----------EECC-CCHHHHHHHHHHHHHHHhC
Confidence 333 245655444442 5664 5899999999999987765
No 263
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.19 E-value=2.1e-11 Score=107.07 Aligned_cols=66 Identities=23% Similarity=0.294 Sum_probs=57.2
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.++++|++++|++ ..+++++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+. ++|.++.
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~---~~g~~~~ 73 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKA---GEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIE---IDGIDIS 73 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEE---ECCEEhH
Confidence 5899999999975 4799999999999 999999999999999999999999888 566654 4565553
No 264
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.19 E-value=1.6e-11 Score=116.06 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=56.2
Q ss_pred ccEEEcceEEEcCC-------------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH
Q 023118 64 HDVESGTFCDSLDG-------------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE 130 (287)
Q Consensus 64 ~~l~~~~l~~~~~~-------------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie 130 (287)
++|+++||++.|+. ..+++|+||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~- 79 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYE---GETLGVVGESGCGKSTFARAIIGLVKA---TDGEVA- 79 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEE-
Confidence 47999999999962 5699999999999 999999999999999999999999987 566553
Q ss_pred HHhCCCch
Q 023118 131 KLMGGTSV 138 (287)
Q Consensus 131 ~~~~G~~i 138 (287)
++|.++
T Consensus 80 --~~G~~i 85 (331)
T PRK15079 80 --WLGKDL 85 (331)
T ss_pred --ECCEEC
Confidence 345444
No 265
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=1.4e-11 Score=114.11 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=51.6
Q ss_pred EEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++|+++.|+. ..+|+|+||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 64 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPS---GSYVAIIGHTGSGKSTLLQHLNGLLQP---TSGTV 64 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEE
Confidence 789999999964 4699999999999 999999999999999999999999987 45544
No 266
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.19 E-value=1.6e-11 Score=126.12 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=59.2
Q ss_pred cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||+++|+ +..+|+|+||++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~---Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~---idg~~i~~~ 520 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEP---GEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVF---YDGQDLAGL 520 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEE---ECCEEcCcC
Confidence 489999999995 46799999999999 999999999999999999999999999 566664 467666554
No 267
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.5e-11 Score=109.79 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=54.5
Q ss_pred EEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|+ +..+++++||++.+ |++++|+||||||||||+++|+|.+.+ +.|.+. ++|.++
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~---~~g~~~ 65 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPA---GKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSIL---IDGQDI 65 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEE---ECCEEh
Confidence 46899999995 56799999999999 999999999999999999999999987 566553 345444
No 268
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.18 E-value=1.8e-11 Score=121.41 Aligned_cols=59 Identities=24% Similarity=0.259 Sum_probs=54.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I 61 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRA---GQVHALMGENGAGKSTLLKILSGNYQP---DAGSI 61 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCCEE
Confidence 469999999999988899999999999 999999999999999999999999887 56654
No 269
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=4.7e-11 Score=108.91 Aligned_cols=55 Identities=24% Similarity=0.187 Sum_probs=51.6
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+++++|+++.|+++.+|+++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 68 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHE---KQVTALIGPSGCGKSTFLRCFNRMHDL 68 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4579999999999988899999999999 999999999999999999999999865
No 270
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.18 E-value=2.3e-11 Score=122.25 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=54.1
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|+ ++.+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~---Ge~~~iiG~NGsGKSTLlk~i~G~~~p---~~G~i 64 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFP---GAKIGVLGLNGAGKSTLLRIMAGVDKE---FEGEA 64 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence 4799999999998 78899999999999 999999999999999999999999887 45543
No 271
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.18 E-value=1.9e-11 Score=120.18 Aligned_cols=67 Identities=28% Similarity=0.347 Sum_probs=60.2
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
.++++++|++|+|+..++|+++||++.+ |++.+|+|.||+|||||.|+|+|.+.| |+|.+. ++|..+
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~---GEV~aL~GeNGAGKSTLmKiLsGv~~p---~~G~I~---~~G~~~ 72 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRP---GEVHALLGENGAGKSTLMKILSGVYPP---DSGEIL---IDGKPV 72 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeC---ceEEEEecCCCCCHHHHHHHHhCcccC---CCceEE---ECCEEc
Confidence 3579999999999999999999999999 999999999999999999999999999 788775 455433
No 272
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.18 E-value=2e-11 Score=125.70 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=59.9
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|+ ++.+|+|+||++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~---G~~vaIvG~SGsGKSTLlklL~gl~~p---~~G~I~---idg~~i~~~ 541 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKM---NSKTTIVGMSGSGKSTLAKLLVGFFQA---RSGEIL---LNGFSLKDI 541 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCcEEE---ECCEEHHHc
Confidence 589999999997 46799999999999 999999999999999999999999999 566664 477777654
No 273
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=3.6e-11 Score=108.69 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=51.3
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|+++.+|+++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~---G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPE---RQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 368999999999988899999999999 999999999999999999999999887
No 274
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.18 E-value=2.5e-11 Score=121.13 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=53.1
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~Gl~~p---~~G~i 58 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGG---GNRYGLIGANGCGKSTFMKILGGDLEP---SAGNV 58 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence 47899999999988899999999999 999999999999999999999999877 45543
No 275
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.18 E-value=1.1e-11 Score=114.45 Aligned_cols=63 Identities=19% Similarity=0.284 Sum_probs=58.2
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT 136 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~ 136 (287)
++.++++++.|+...+++|++++|+. |+.++|.|||||||||++++|||++.| |.|.++ ++|.
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~---Ge~vaLlGpSGaGKsTlLRiIAGLe~p---~~G~I~---~~~~ 64 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKS---GELVALLGPSGAGKSTLLRIIAGLETP---DAGRIR---LNGR 64 (345)
T ss_pred ceeehhhhhhcccccccccceeeecC---CcEEEEECCCCCcHHHHHHHHhCcCCC---CCceEE---ECCE
Confidence 47899999999999999999999999 999999999999999999999999999 788775 5565
No 276
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.17 E-value=2.5e-11 Score=103.95 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=88.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhh---hHHHHHHHhhcCCCeEEecC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFRE---YESKALQKLSLVPQQVVATG 172 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~---~e~~~l~~l~~~~~~via~g 172 (287)
.|+|.|.||+||||+.+.|+ .+++.++...+++.+. |. +. +.+.-|. .+.+.++.... ..+..+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~--~~-----~~--~~de~r~s~~vD~d~~~~~le---~~~~~~ 68 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN--GL-----YT--EYDELRKSVIVDVDKLRKRLE---ELLREG 68 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc--CC-----ee--ccCCccceEEeeHHHHHHHHH---HHhccC
Confidence 68999999999999999999 9999999999887443 11 00 1110000 01111111110 011112
Q ss_pred CceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecc
Q 023118 173 GGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLL 251 (287)
Q Consensus 173 gG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~ 251 (287)
+++ .....-.++. -.++|-|.++|+.+.+|+..||...-....+- + . +.+.-.+.+=.+.+ +..+
T Consensus 69 ~~I-vd~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENv--e--A---Ei~~vi~~EA~E~~---~~v~--- 134 (180)
T COG1936 69 SGI-VDSHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENV--E--A---EILDVILIEAVERF---EAVI--- 134 (180)
T ss_pred CeE-eechhhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHH--H--H---HHHHHHHHHHHHhc---CceE---
Confidence 222 2223334455 37899999999999999999875432233221 1 1 12222222222222 2222
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 252 NLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.+||++.+|+++++.|++.+..
T Consensus 135 -------evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 135 -------EVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred -------EEECCCCCHHHHHHHHHHHHcc
Confidence 2699999999999999999883
No 277
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.17 E-value=1.5e-11 Score=110.73 Aligned_cols=58 Identities=24% Similarity=0.261 Sum_probs=54.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+|+||+..+++|+||++++ |+..+++|+||+||||.+++|.+.+.| +.|.+
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~---G~i~GllG~NGAGKTTtfRmILglle~---~~G~I 59 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPP---GEIFGLLGPNGAGKTTTFRMILGLLEP---TEGEI 59 (300)
T ss_pred ceEEecchhccCceeeecceeeeecC---CeEEEeecCCCCCccchHHHHhccCCc---cCceE
Confidence 58999999999999999999999999 999999999999999999999999999 56655
No 278
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.17 E-value=2.9e-11 Score=121.58 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=60.9
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|++ ..+|+|+|+++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. ++|.++.++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~---G~~~aIvG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~g~~i~~~ 410 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPA---GKTVALVGRSGSGKSTIANLLTRFYDI---DEGEIL---LDGHDLRDY 410 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCceEE---ECCEEhhhc
Confidence 4999999999964 5799999999999 999999999999999999999999999 677765 578887765
No 279
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.17 E-value=4.9e-11 Score=103.31 Aligned_cols=60 Identities=27% Similarity=0.273 Sum_probs=51.8
Q ss_pred cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
.|+++.|++..++++. +++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|..+
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~i 63 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKE---GEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDE---WDGITP 63 (177)
T ss_pred CCeEEEECCEEEEccC-cEECC---CCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEE---ECCEEE
Confidence 5889999999999884 89999 999999999999999999999999988 677664 455443
No 280
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.17 E-value=1.8e-11 Score=105.16 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=64.1
Q ss_pred cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
+|+++++++..+ ...||+++++.|++ |+.++||||||||||||+-+|||+..+ ++|++. ..|+++..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~---Ge~vaiVG~SGSGKSTLl~vlAGLd~~---ssGeV~---l~G~~L~~ 76 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKR---GETVAIVGPSGSGKSTLLAVLAGLDDP---SSGEVR---LLGQPLHK 76 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecC---CceEEEEcCCCCcHHhHHHHHhcCCCC---CCceEE---EcCcchhh
Confidence 799999999886 35799999999999 999999999999999999999999999 677764 35887766
Q ss_pred hhhhhchhhhhh
Q 023118 141 IFKESGEAYFRE 152 (287)
Q Consensus 141 ~~~~~g~~~fr~ 152 (287)
+ .+++...||.
T Consensus 77 l-dEd~rA~~R~ 87 (228)
T COG4181 77 L-DEDARAALRA 87 (228)
T ss_pred c-CHHHHHHhhc
Confidence 6 3334444443
No 281
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.17 E-value=2.4e-11 Score=125.18 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=58.7
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|++ +.+|+|+||++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~---Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~---idg~~i~~~ 546 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQP---GQRVALVGGSGSGKSTIAKLVAGLYQP---WSGEIL---FDGIPREEI 546 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEeHHHC
Confidence 5899999999974 5799999999999 999999999999999999999999999 566554 366666543
No 282
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.17 E-value=9.7e-12 Score=110.90 Aligned_cols=58 Identities=26% Similarity=0.292 Sum_probs=53.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+.++++++.|+++++|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~ 80 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPR---GERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVT 80 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 7789999999999999999999999 999999999999999999999999887 566553
No 283
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.17 E-value=2.3e-11 Score=108.73 Aligned_cols=57 Identities=16% Similarity=0.107 Sum_probs=50.2
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|+++.|++.. .++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~ 57 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVER---GERVAILGPSGAGKSTLLNLIAGFLTP---ASGSLT 57 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence 478999999998643 389999999 999999999999999999999999987 566553
No 284
>PLN02200 adenylate kinase family protein
Probab=99.16 E-value=2.7e-09 Score=96.31 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=93.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCc-----hhhhhhhhchhhhhhhHHHHHH-HhhcC-CC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTS-----VAQIFKESGEAYFREYESKALQ-KLSLV-PQ 166 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~-----i~~~~~~~g~~~fr~~e~~~l~-~l~~~-~~ 166 (287)
..+|+|+|++||||||+++.|+..++..++++|+++.+...+.+ +.+.. ..|...--......+. .+... .+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~-~~G~~vp~e~~~~~l~~~l~~~~~~ 121 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTI-KEGKIVPSEVTVKLIQKEMESSDNN 121 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHH-HcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 46889999999999999999999999999999999876542221 11111 1122111111112222 22221 12
Q ss_pred eEEecCCceEeccccHHhhc------CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-HH-
Q 023118 167 QVVATGGGAVVRPLNWRFMR------QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-RS- 238 (287)
Q Consensus 167 ~via~ggG~v~~~~~~~~L~------~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-R~- 238 (287)
.++-.| .+........+. -..+|||++|++.+.+|+..|.. .|+- ++.+.. ..++ +.|.+ ..
T Consensus 122 ~~ILDG--~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~-~r~d---d~~e~~---~~Rl-~~y~~~~~p 191 (234)
T PLN02200 122 KFLIDG--FPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ-GRVD---DNIDTI---KKRL-KVFNALNLP 191 (234)
T ss_pred eEEecC--CcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC-CCCC---CCHHHH---HHHH-HHHHHHHHH
Confidence 233333 111111122221 25789999999999999987642 2321 111111 1222 22222 22
Q ss_pred --hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 239 --EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 239 --~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
..|+..+..+ .||.+. +|++|.+.|.+.+...+.
T Consensus 192 v~~~y~~~~~~~----------~IDa~~-~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 192 VIDYYSKKGKLY----------TINAVG-TVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HHHHHHhcCCEE----------EEECCC-CHHHHHHHHHHHHHHcCC
Confidence 3454433222 268775 999999999999887654
No 285
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.1e-11 Score=108.83 Aligned_cols=58 Identities=28% Similarity=0.281 Sum_probs=53.8
Q ss_pred cEEEcceEEEcCCee-eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKW-LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~-il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|+++.+++|+|+..+ +++|+||+++. |++++|.|+||+||||++++||.+|.| |.|.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~---Gei~GlLG~NGAGKTT~LRmiatlL~P---~~G~v 59 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEE---GEITGLLGENGAGKTTLLRMIATLLIP---DSGKV 59 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEecc---ceEEEEEcCCCCCchhHHHHHHHhccC---CCceE
Confidence 589999999999865 99999999999 999999999999999999999999999 66655
No 286
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.15 E-value=2.9e-11 Score=109.92 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=53.7
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
..++++|+++.|++ ..+++++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+.
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~ 79 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKP---GQKVGICGRTGSGKSSLSLAFFRMVDI---FDGKIV 79 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcC---CCEEEEECCCCCCHHHHHHHHHcccCC---CCCeEE
Confidence 36899999999975 5799999999999 999999999999999999999999877 566553
No 287
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.15 E-value=3.3e-11 Score=121.13 Aligned_cols=68 Identities=26% Similarity=0.329 Sum_probs=60.4
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|+++.|+ ++++++|+||++++ |+.++|+||+||||||+.++|++.+.| +.|.+. .+|.++.++
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~---Ge~vaiVG~sGsGKSTl~~LL~r~~~~---~~G~I~---idg~dI~~i 396 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEP---GEKVAIVGPSGSGKSTLIKLLLRLYDP---TSGEIL---IDGIDIRDI 396 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEE---ECCEehhhc
Confidence 499999999998 68999999999999 999999999999999999999999999 566654 367777665
No 288
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=3e-11 Score=106.29 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=52.6
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|++... ++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~---Ge~~~l~G~nGsGKSTLl~~l~gl~~~---~~G~i~---~~g~~~ 62 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQ---GEITAIVGPSGSGKSTLLNLIAGFETP---QSGRVL---INGVDV 62 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEc
Confidence 468999999987543 99999999 999999999999999999999999988 566654 456544
No 289
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=1.3e-11 Score=113.06 Aligned_cols=56 Identities=18% Similarity=0.269 Sum_probs=51.3
Q ss_pred EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..+|+++.|+...+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---~~G~i 81 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVRE---GEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKV 81 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence 567999999999999999999999 999999999999999999999999987 55544
No 290
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=2.8e-11 Score=111.63 Aligned_cols=55 Identities=24% Similarity=0.237 Sum_probs=50.6
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.+++++|+++.|++ ..+++++||++.+ |++++|+||||||||||+++|+|.+.|.
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~---Ge~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPR---GSWTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcC---CCEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 36899999999964 4699999999999 9999999999999999999999999874
No 291
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.15 E-value=3.6e-11 Score=119.73 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=60.1
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|++ +++|+|+|+++++ |+.++|+|++|||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~I~---~~g~~i~~~ 389 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPP---GERVALVGPSGAGKSTLLNLLLGFVDP---TEGSIA---VNGVPLADA 389 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEehhhC
Confidence 5899999999975 4699999999999 999999999999999999999999999 567665 478777665
No 292
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.15 E-value=3.4e-10 Score=102.45 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=90.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118 97 LFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 97 i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ 171 (287)
|+|+|++||||||+++.|+..+. ..+++.|.+.+... .+...++..+|......++........||..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D 74 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-------VWKEKYEEFIRDSTLYLIKTALKNKYSVIVD 74 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 78999999999999999998763 23455665543221 0122345566666666666655545557766
Q ss_pred CCceEec--cccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh--h
Q 023118 172 GGGAVVR--PLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA--N 243 (287)
Q Consensus 172 ggG~v~~--~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~--~ 243 (287)
++..... ...+...+. + .+|||++|++.+.+|...++. +. .+ +.+..+.+.|+...+.|. .
T Consensus 75 ~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~~-----~~---~~i~~l~~r~e~p~~~~~wd~ 143 (249)
T TIGR03574 75 DTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---KI-----PN---EVIKDMYEKFDEPGTKYSWDL 143 (249)
T ss_pred ccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---CC-----CH---HHHHHHHHhhCCCCCCCCccC
Confidence 6532111 111122222 3 689999999999999876532 11 11 112233333333334443 2
Q ss_pred CCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHH
Q 023118 244 ADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQK 280 (287)
Q Consensus 244 ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~ 280 (287)
++++| |++. .+++++++.|++.+..
T Consensus 144 ~~~~v------------d~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 144 PDLTI------------DTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred ceEEe------------cCCCCCCHHHHHHHHHHHhhc
Confidence 55554 5654 6889999999988764
No 293
>PRK14526 adenylate kinase; Provisional
Probab=99.15 E-value=2.2e-09 Score=95.48 Aligned_cols=107 Identities=20% Similarity=0.317 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-----CCchhhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-----GTSVAQIFKESGEAYFREYESKALQK-LSLVPQQVV 169 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-----G~~i~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi 169 (287)
.|+|+||+||||||+++.|++.+++.++++|+++.+... |..+.+++. .|.-.--..-..++.+ +....
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~---- 76 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIK---- 76 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhccc----
Confidence 488999999999999999999999999999999876542 233444432 2221111111122222 22111
Q ss_pred ecCCceEec--cccHH---hhc----CCcEEEEecCHHHHHHHHhhcC
Q 023118 170 ATGGGAVVR--PLNWR---FMR----QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 170 a~ggG~v~~--~~~~~---~L~----~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
+..|.+++ |.+.. .|. .-.+|+|++|.+++.+|+..|.
T Consensus 77 -~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 77 -NNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred -ccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence 12333332 33322 222 2357889999999999998763
No 294
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=3.7e-11 Score=108.58 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=48.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
-+++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|...
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYK---REVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999999888899999999999 99999999999999999999999976
No 295
>PRK02496 adk adenylate kinase; Provisional
Probab=99.15 E-value=1.9e-09 Score=92.87 Aligned_cols=162 Identities=18% Similarity=0.234 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch----hhhhhhhchhhhhhhHHHHHHH-hhcC--CC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV----AQIFKESGEAYFREYESKALQK-LSLV--PQ 166 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i----~~~~~~~g~~~fr~~e~~~l~~-l~~~--~~ 166 (287)
.+++|+||+||||||+++.|+..++..+++.|+++.+... +..+ ..++ ..|..........++.+ +... ..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence 3589999999999999999999999999999998876542 2222 1121 22332222222333332 2211 12
Q ss_pred eEEecCC-ceEeccccHH-hhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-HH
Q 023118 167 QVVATGG-GAVVRPLNWR-FMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-RS 238 (287)
Q Consensus 167 ~via~gg-G~v~~~~~~~-~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-R~ 238 (287)
.++..|- .++.....+. .+. ...+|||++|.+.+.+|+..++ ++ . ...+ .+.+..+.|.+ -.
T Consensus 81 g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~---~~--d-d~~~----~~~~r~~~y~~~~~ 150 (184)
T PRK02496 81 GWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG---RK--D-DTEE----VIRRRLEVYREQTA 150 (184)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC---CC--C-CCHH----HHHHHHHHHHHHHH
Confidence 2333332 1111111111 111 2578999999999999998764 21 1 1111 11222222222 11
Q ss_pred h---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 239 E---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 239 ~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
| .|+..+..+ .||.+. ++++|.++|...+
T Consensus 151 ~v~~~~~~~~~~~----------~Ida~~-~~~~V~~~i~~~l 182 (184)
T PRK02496 151 PLIDYYRDRQKLL----------TIDGNQ-SVEAVTTELKAAL 182 (184)
T ss_pred HHHHHHHhcCCEE----------EEECCC-CHHHHHHHHHHHh
Confidence 2 444323222 267775 8999999998765
No 296
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.14 E-value=1.7e-09 Score=95.77 Aligned_cols=107 Identities=16% Similarity=0.261 Sum_probs=66.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-----chhhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-----SVAQIFKESGEAYFREYESKALQK-LSLVPQQVV 169 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-----~i~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi 169 (287)
+|+|+|++||||||+++.||..+++.+++.|+++.+...+. .+.+++. .|..........++.+ +....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~---- 76 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPD---- 76 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccC----
Confidence 58999999999999999999999999999999987654222 2223322 2322222222333332 22211
Q ss_pred ecCCceEec--cccH---Hhh----c-----CCcEEEEecCHHHHHHHHhhcC
Q 023118 170 ATGGGAVVR--PLNW---RFM----R-----QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 170 a~ggG~v~~--~~~~---~~L----~-----~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
++.|.|++ |.+. ..| . -..+|||++|.+.+.+|+..|.
T Consensus 77 -~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 77 -CKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred -ccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 12233333 2221 223 1 1378999999999999998764
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.14 E-value=3.3e-11 Score=119.37 Aligned_cols=53 Identities=30% Similarity=0.391 Sum_probs=50.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.|
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~---Ge~~~liG~nGsGKSTLl~~i~G~~~~ 53 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRP---GECVGLCGENGAGKSTLMKILSGVYPH 53 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeC---CcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 47899999999988899999999999 999999999999999999999999875
No 298
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=6.3e-11 Score=107.93 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=50.8
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++|+++.|++..+|+|+||++++ |++++|+|+||||||||+++|+|.+.+
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQ---SKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcC---CcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 58999999999888899999999999 999999999999999999999999876
No 299
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=4.4e-11 Score=111.85 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=51.7
Q ss_pred cEEEcceEEEcCCe-----eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGK-----WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~-----~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+|+++|+++.|++. .+|+++||++.+ |++++|+|+||||||||+++|+|.+.| +.|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~---Ge~v~iiG~nGsGKSTLl~~L~Gl~~p---~~G~i 64 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQ---GEFIAIIGQTGSGKTTFIEHLNALLLP---DTGTI 64 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEE
Confidence 38899999999742 599999999999 999999999999999999999999988 45544
No 300
>PRK04040 adenylate kinase; Provisional
Probab=99.14 E-value=2.4e-09 Score=93.54 Aligned_cols=121 Identities=14% Similarity=0.178 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHh--CCCch-hhhhhhhchh---hhhhhHHHHHHHhhcCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLM--GGTSV-AQIFKESGEA---YFREYESKALQKLSLVP 165 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~--~G~~i-~~~~~~~g~~---~fr~~e~~~l~~l~~~~ 165 (287)
...|+|+|++||||||+++.|+..+ ++.|++.|+++.... .|... .+-+..-... .++..-.+.+++... .
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~-~ 80 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAG-E 80 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhc-C
Confidence 4689999999999999999999999 899999998864432 23211 1111111111 111112222233222 2
Q ss_pred CeEEecCCceEecccc-H--------HhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCc
Q 023118 166 QQVVATGGGAVVRPLN-W--------RFMRQGITVFLNVPLDALARRIAAVGTDSFPLL 215 (287)
Q Consensus 166 ~~via~ggG~v~~~~~-~--------~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll 215 (287)
..++-.|..++.++.. | +.+....+|||.+||+.+.+|......+.|+..
T Consensus 81 ~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~e 139 (188)
T PRK04040 81 GPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVE 139 (188)
T ss_pred CCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCC
Confidence 2355556544443331 1 223336789999999999999775323345543
No 301
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=5.5e-11 Score=105.16 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=50.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+.++++||++.||++.+|+++|+++++ +++.+|||||||||||++|.+......
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~---~~VTAlIGPSGcGKST~LR~lNRmndl 59 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPK---NKVTALIGPSGCGKSTLLRCLNRMNDL 59 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccC---CceEEEECCCCcCHHHHHHHHHhhccc
Confidence 468999999999999999999999999 999999999999999999999876544
No 302
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.14 E-value=4.3e-11 Score=123.54 Aligned_cols=68 Identities=25% Similarity=0.301 Sum_probs=59.3
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||+++|++ ..+|+|+||++++ |+.++|+||||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~---Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~---idg~~i~~~ 548 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHP---GEVVALVGPSGSGKSTVAALLQNLYQP---TGGQVL---LDGVPLVQY 548 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEE---ECCEEHHhc
Confidence 5999999999963 4699999999999 999999999999999999999999999 566664 467766654
No 303
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=3.3e-11 Score=105.42 Aligned_cols=55 Identities=24% Similarity=0.321 Sum_probs=50.9
Q ss_pred ccEEEcceEEEcCCee--eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 64 HDVESGTFCDSLDGKW--LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~--il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.++.+++++.+|+++. +|+|+|+++.+ |+.++++||||||||||++++||...|.
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~---ge~vv~lGpSGcGKTTLLnl~AGf~~P~ 58 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIAS---GELVVVLGPSGCGKTTLLNLIAGFVTPS 58 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecC---CCEEEEEcCCCccHHHHHHHHhcCcCcc
Confidence 3577899999998776 99999999999 9999999999999999999999999883
No 304
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=3e-11 Score=116.93 Aligned_cols=45 Identities=20% Similarity=0.392 Sum_probs=40.3
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 41 ~~~L~~isl~i~~---Gei~~LvG~NGsGKSTLLr~I~Gl~~p---~sG~I 85 (400)
T PRK10070 41 SLGVKDASLAIEE---GEIFVIMGLSGSGKSTMVRLLNRLIEP---TRGQV 85 (400)
T ss_pred eEEEEeEEEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCC---CCCEE
Confidence 3489999999999 999999999999999999999999988 45543
No 305
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=6.7e-11 Score=120.80 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=54.4
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..+++++|+++.|++..+|+++||+|.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~---Ge~~~l~G~NGsGKSTLlk~l~G~~~p---~~G~i 369 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVP---GSRIGLLGRNGAGKSTLIKLLAGELAP---VSGEI 369 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeE
Confidence 3479999999999988999999999999 999999999999999999999999877 45543
No 306
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.13 E-value=5e-11 Score=118.92 Aligned_cols=59 Identities=25% Similarity=0.315 Sum_probs=55.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++|.++|+++.|+++.+|+++|+++.+ |++|+|||+||||||||+|+|+|.+.| ++|.+
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~---G~riGLvG~NGaGKSTLLkilaG~~~~---~~G~i 60 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNP---GERIGLVGRNGAGKSTLLKILAGELEP---DSGEV 60 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCC---CCEEEEECCCCCCHHHHHHHHcCCCcC---CCCeE
Confidence 478999999999999999999999999 999999999999999999999999988 67765
No 307
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.13 E-value=2.3e-10 Score=95.21 Aligned_cols=109 Identities=28% Similarity=0.397 Sum_probs=71.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH-----HhCCCchhhhhhhhchhhhhhhHHHHHHHhh-cCCCeEEe
Q 023118 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK-----LMGGTSVAQIFKESGEAYFREYESKALQKLS-LVPQQVVA 170 (287)
Q Consensus 97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~-----~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~-~~~~~via 170 (287)
+.|+|++||||||+++.|+..++..++|+|.+... +..|....+ ...+.+++.......+.+. .....|+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~vVid 78 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLND---EDRWPWLQALTDALLAKLASAGEGVVVA 78 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCc---cchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 78999999999999999999999999999998753 233443322 1234444544444444443 33344555
Q ss_pred cCCceEeccccHHhhcC------CcEEEEecCHHHHHHHHhhcCCCC
Q 023118 171 TGGGAVVRPLNWRFMRQ------GITVFLNVPLDALARRIAAVGTDS 211 (287)
Q Consensus 171 ~ggG~v~~~~~~~~L~~------g~~I~L~~~~e~l~~Ri~~~~~~~ 211 (287)
++. .....+..+.. -.+|||++|++++.+|+..|..+.
T Consensus 79 ~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~ 122 (150)
T cd02021 79 CSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHF 122 (150)
T ss_pred ecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCC
Confidence 443 23333433332 258999999999999998875443
No 308
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.13 E-value=4.6e-11 Score=120.43 Aligned_cols=68 Identities=21% Similarity=0.347 Sum_probs=59.4
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|+++.|++ +.+|+|+||++++ |+.++|+||||||||||+++|+|.+.| ++|.+. .+|.++.++
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~---G~~~aivG~sGsGKSTL~~ll~g~~~p---~~G~I~---i~g~~i~~~ 407 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKA---GEKVALLGRTGCGKSTLLQLLTRAWDP---QQGEIL---LNGQPIADY 407 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEEhhhC
Confidence 5999999999964 4699999999999 999999999999999999999999998 677664 467766554
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.13 E-value=5.3e-11 Score=119.48 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=53.7
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|++++|+ ++++|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~---Ge~~~liG~NGsGKSTLl~~i~G~~~p---~~G~i 62 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFP---GAKIGVLGLNGAGKSTLLRIMAGVDKE---FNGEA 62 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence 3689999999998 77899999999999 999999999999999999999999887 45544
No 310
>PRK08233 hypothetical protein; Provisional
Probab=99.13 E-value=8.9e-10 Score=93.92 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=83.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC-CccccchhHHHHHhCCCchhhhhhhhchh---hhhhhHHHHHHHhhcCC--Ce
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD-YTFADSDKYVEKLMGGTSVAQIFKESGEA---YFREYESKALQKLSLVP--QQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~-~~fid~d~~ie~~~~G~~i~~~~~~~g~~---~fr~~e~~~l~~l~~~~--~~ 167 (287)
+..|+|.|++||||||+++.|++.++ ...+-.|.+.... ....+..... .+.. .....-...++.+.... ..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN-CPEDICKWID-KGANYSEWVLTPLIKDIQELIAKSNVDY 80 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc-Cchhhhhhhh-ccCChhhhhhHHHHHHHHHHHcCCCceE
Confidence 67899999999999999999999886 2222222211000 0001111100 0110 00001111233222222 23
Q ss_pred EEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh--CC
Q 023118 168 VVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN--AD 245 (287)
Q Consensus 168 via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~--ad 245 (287)
++..|......+..... -..+|||++|++++.+|+..|... .+ ..+. ....+...+..+.|.|.. .+
T Consensus 81 vivd~~~~~~~~~~~~~--~d~~i~l~~~~~~~~~R~~~R~~~-~~-----~~~~---~~~~~~~~~~~~~~~y~~~~~~ 149 (182)
T PRK08233 81 IIVDYPFAYLNSEMRQF--IDVTIFIDTPLDIAMARRILRDFK-ED-----TGNE---IHNDLKHYLNYARPLYLEALHT 149 (182)
T ss_pred EEEeeehhhccHHHHHH--cCEEEEEcCCHHHHHHHHHHHHhh-hc-----cccc---hhhHHHHHHHHHHHHHHHHhhc
Confidence 44333221111111111 268999999999998886654311 11 0111 124466666777787765 11
Q ss_pred eEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 246 ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 246 ~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.. .-+ ..+||++ .++++++++|...+..
T Consensus 150 ~~----~~~--~~vId~~-~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 150 VK----PNA--DIVLDGA-LSVEEIINQIEEELYR 177 (182)
T ss_pred Cc----cCC--eEEEcCC-CCHHHHHHHHHHHHHh
Confidence 10 000 0125654 7999999999988764
No 311
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.13 E-value=4.6e-11 Score=122.81 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=58.4
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|++ ..+|+|+||++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~---G~~iaIvG~sGsGKSTLlklL~gl~~p---~~G~I~---idg~~l~~~ 532 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRP---GEKVAIIGRIGSGKSTLLKLLLGLYQP---TEGSVL---LDGVDIRQI 532 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEEhhhC
Confidence 4899999999963 5699999999999 999999999999999999999999999 566554 466666543
No 312
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.13 E-value=4.8e-11 Score=120.43 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=57.8
Q ss_pred cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
.++++|+++.|++ ..+|+|+||++++ |+.++|+|+||||||||+++|+|.+.| ++|.+. ++|.++.+
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~---Ge~iaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~---idg~~i~~ 407 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPS---RGFVALVGHTGSGKSTLASLLMGYYPL---TEGEIR---LDGRPLSS 407 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCceEE---ECCEEhhh
Confidence 4899999999964 5699999999999 999999999999999999999999999 566554 35665544
No 313
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=4.1e-11 Score=110.23 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=52.0
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+. ..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~---Ge~~~I~G~nGsGKSTLl~~l~Gl~~~---~~G~i 64 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITK---GEWVSIIGQNGSGKSTTARLIDGLFEE---FEGKV 64 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCCEE
Confidence 6899999999974 3599999999999 999999999999999999999999987 45544
No 314
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.12 E-value=7.3e-10 Score=107.19 Aligned_cols=159 Identities=22% Similarity=0.273 Sum_probs=93.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-C-Cchhhhhhhhchh----------------hhhhhHHH-
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-G-TSVAQIFKESGEA----------------YFREYESK- 156 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G-~~i~~~~~~~g~~----------------~fr~~e~~- 156 (287)
.|+|+|..||||||++++|+. +|++++|+|.+..+.+. | ..+.+++...|.. .|++.+..
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~ 81 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA 81 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 699999999999999999998 79999999999877652 2 2334555555665 55544332
Q ss_pred HHHHhhcCCCeEE--------ecCCceEeccccHHhhc-C------CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcc
Q 023118 157 ALQKLSLVPQQVV--------ATGGGAVVRPLNWRFMR-Q------GITVFLNVPLDALARRIAAVGTDSFPLLDYDSAD 221 (287)
Q Consensus 157 ~l~~l~~~~~~vi--------a~ggG~v~~~~~~~~L~-~------g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~ 221 (287)
.+..+. ++.|. .++++.+.-. +..+|. . ..+||+++|++.+.+|+..+ |++..
T Consensus 82 ~le~i~--hP~I~~~i~~~i~~~~~~~vvv~-eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~r----Rg~s~----- 149 (395)
T PRK03333 82 VLNGIV--HPLVGARRAELIAAAPEDAVVVE-DIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQ----RGMAE----- 149 (395)
T ss_pred HHHHhh--hHHHHHHHHHHHHhcCCCCEEEE-EeeeeecCCchhhCCEEEEEECCHHHHHHHHHhc----CCCCH-----
Confidence 111110 11111 1222212111 112221 1 47899999999999999763 22211
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 222 SYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 222 ~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.++...+...+ ..++.-+.||++| |++ .+++++..++.+.++.++.
T Consensus 150 --~~a~~ri~~Q~-~~e~k~~~AD~vI------------dN~-~s~e~l~~~v~~~l~~~~~ 195 (395)
T PRK03333 150 --ADARARIAAQA-SDEQRRAVADVWL------------DNS-GTPDELVEAVRALWADRLL 195 (395)
T ss_pred --HHHHHHHHhcC-ChHHHHHhCCEEE------------ECC-CCHHHHHHHHHHHHHHHHh
Confidence 01111221110 1112222378776 543 4899999999999887765
No 315
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.12 E-value=7.6e-11 Score=120.29 Aligned_cols=54 Identities=30% Similarity=0.357 Sum_probs=51.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.|
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~l~G~~~p 371 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQR---GDKIALIGPNGCGKTTLLKLMLGQLQA 371 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 479999999999988899999999999 999999999999999999999999876
No 316
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.12 E-value=1.7e-11 Score=125.70 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=110.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh-hhhhhhchhhhhhhHHHHHHHhhc-CCCeEEec
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA-QIFKESGEAYFREYESKALQKLSL-VPQQVVAT 171 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~-~~~~~~g~~~fr~~e~~~l~~l~~-~~~~via~ 171 (287)
.-.+.++|.+|+||||+++.|+..+++.++|++.+..... +..+. +.+...++..|+..|..++..++. ....++++
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~-rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~ 293 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAY-RRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKT 293 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchh-HhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999998876555 44554 345566778888888887777664 34557788
Q ss_pred CCceEeccccHHhhcC----------C-----cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 172 GGGAVVRPLNWRFMRQ----------G-----ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 172 ggG~v~~~~~~~~L~~----------g-----~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
||++|.+..|+..++. | .+|||.+ .....+|+... ..||.+... +.+++..+++.++++.
T Consensus 294 GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~-vc~~~~~i~~n--i~r~~~~~~--~~~e~~~~~~~~~~~~ 368 (664)
T PTZ00322 294 DGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV-VNNNSETIRRN--VLRAKEMFP--GAPEDFVDRYYEVIEQ 368 (664)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE-eCCCHHHHHHH--HHHHHhcCC--CCHHHHHHHHHHHHHH
Confidence 9999999877654331 2 5899997 66666666432 235555432 2455666889999999
Q ss_pred HHhhhhhCCeEE
Q 023118 237 RSEAYANADATV 248 (287)
Q Consensus 237 R~~~Y~~ad~~v 248 (287)
|.+.|+.++..+
T Consensus 369 ~~~~Ye~~~~~~ 380 (664)
T PTZ00322 369 LEAVYKSLNPVT 380 (664)
T ss_pred HHhhcccCCccc
Confidence 999999877554
No 317
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.12 E-value=4.1e-11 Score=107.48 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=50.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|+++|+++.|++. +++++||++.+ |++++|+|+||||||||+++|+|.+.| +.|.+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~---Ge~~~i~G~nG~GKStLl~~l~G~~~p---~~G~v 56 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVER---GDYFVILGPTGSGKSVLLETIAGFIKP---DSGKI 56 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhCCcCC---CceEE
Confidence 4688999999764 89999999999 999999999999999999999999888 55544
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=7.1e-11 Score=117.91 Aligned_cols=59 Identities=27% Similarity=0.340 Sum_probs=54.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~~p---~~G~i 376 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEA---GERLAIIGENGVGKTTLLRTLVGELEP---DSGTV 376 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEE
Confidence 479999999999988899999999999 999999999999999999999999887 55654
No 319
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=5.5e-11 Score=111.00 Aligned_cols=52 Identities=19% Similarity=0.200 Sum_probs=50.0
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++.++|+++.|++..+|+++||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 45 ~l~i~nl~~~~~~~~iL~~is~~i~~---Ge~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 45 KLSVEDLDVYYGDDHALKGVSMDIPE---KSVTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred eEEEEEEEEEeCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 68999999999988899999999999 99999999999999999999999985
No 320
>PRK14527 adenylate kinase; Provisional
Probab=99.11 E-value=3.4e-09 Score=92.12 Aligned_cols=166 Identities=21% Similarity=0.239 Sum_probs=88.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCchhhhhh---hhchhhhhhhHHHHHHH-hhcCC-Ce
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSVAQIFK---ESGEAYFREYESKALQK-LSLVP-QQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i~~~~~---~~g~~~fr~~e~~~l~~-l~~~~-~~ 167 (287)
+..|+|+||+||||||+++.|+..++...++.|+++..... +.++..... ..|...-...-..++.+ +...+ ..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~~ 85 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPVR 85 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCCc
Confidence 78999999999999999999999999999999999866542 333322111 11111100111222222 22211 22
Q ss_pred EEecCCceEeccccHHhh----c----C-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH-H
Q 023118 168 VVATGGGAVVRPLNWRFM----R----Q-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE-R 237 (287)
Q Consensus 168 via~ggG~v~~~~~~~~L----~----~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~-R 237 (287)
+|-.| .+-+......+ . . ..+|||++|.+++.+|+..|... .....+.. +...+-.+.|.+ -
T Consensus 86 ~VlDG--fpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~-----~~r~dd~~-~~~~~R~~~y~~~~ 157 (191)
T PRK14527 86 VIFDG--FPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQ-----EGRSDDNE-ETVRRRQQVYREQT 157 (191)
T ss_pred EEEcC--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCccc-----CCCCCCCH-HHHHHHHHHHHHHh
Confidence 33333 21111111111 1 1 35799999999999999876421 11111111 111211222222 2
Q ss_pred Hh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 238 SE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 238 ~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
.| .|+.-+..+. ||.+ -++++|.++|...+
T Consensus 158 ~~v~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~l 190 (191)
T PRK14527 158 QPLVDYYEARGHLKR----------VDGL-GTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHhcCCEEE----------EECC-CCHHHHHHHHHHhh
Confidence 22 4544233332 5765 48999999888764
No 321
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.11 E-value=4.3e-11 Score=106.52 Aligned_cols=59 Identities=24% Similarity=0.261 Sum_probs=51.8
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC---CccccchhHH
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD---YTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~---~~fid~d~~i 129 (287)
+++++|+++.|.. +++++++||++.+ |++++|+||||||||||+++|+|.+. + ++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~---~~G~i~ 68 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVES---GQVMAILGSSGSGKTTLLDAISGRVEGGGT---TSGQIL 68 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcC---CeEEEEECCCCCCHHHHHHHHhCccCCCCC---CceEEE
Confidence 4679999999953 5799999999999 99999999999999999999999987 5 555543
No 322
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.11 E-value=5.7e-11 Score=119.01 Aligned_cols=67 Identities=22% Similarity=0.364 Sum_probs=58.6
Q ss_pred cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
.++++|++++|++ ..+|+|+||++++ |+.++|+||||||||||+++|+|.+.| +.|.+. ++|.++.+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~---G~~~aivG~sGsGKSTL~~ll~g~~~~---~~G~i~---~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKR---GELLFLIGGNGSGKSTLAMLLTGLYQP---QSGEIL---LDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEECCC
Confidence 4899999999964 5699999999999 999999999999999999999999988 677664 46766654
No 323
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=6.8e-11 Score=107.92 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=50.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+.++++++.|++..+|+++||++++ |++++|+|+||||||||+++|+|.+.|
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 7 IVMDCKLDKIFYGNFMAVRDSHVPIRK---NEITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred ceEEEEeEEEEeCCEEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHccccc
Confidence 358899999999998999999999999 999999999999999999999999875
No 324
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.11 E-value=6.4e-11 Score=118.20 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=50.3
Q ss_pred ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|+. ..+|+++||++.+ |++++|+||||||||||+++|+|.+.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEA---GETLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeC---CCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 47999999999963 5799999999999 999999999999999999999999976
No 325
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.11 E-value=5.5e-11 Score=105.20 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=53.8
Q ss_pred EEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 67 ESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 67 ~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
.+.|+.+.|+ ...+++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~ 65 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPT---GQLTMIVGQVGCGKSSLLLAILGEMQT---LEGKVH---WSNKNE 65 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccCCC---CCCeEE---ECCccc
Confidence 4678899996 56799999999999 999999999999999999999999987 567654 455544
No 326
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.10 E-value=7e-11 Score=119.21 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=57.5
Q ss_pred cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
.++++|++++|++ ..+|+|+|+++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. .+|.++.+
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~---G~~v~IvG~sGsGKSTLl~lL~gl~~p---~~G~I~---i~g~~i~~ 401 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKP---GQTVAIVGPTGAGKSTLINLLQRVFDP---QSGRIL---IDGTDIRT 401 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCEEhhh
Confidence 4899999999964 5799999999999 999999999999999999999999999 566553 35655544
No 327
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.10 E-value=2.7e-09 Score=93.34 Aligned_cols=38 Identities=29% Similarity=0.495 Sum_probs=34.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
..|+|+|++||||||+++.|+. +|++++|+|.+..+.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 40 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVV 40 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHh
Confidence 4799999999999999999998 8999999999977665
No 328
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.7e-11 Score=103.61 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=58.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
+++.+|++-.-++..+|.++||++.+ |+.+.|.||||||||||+|+|||++.| ++|.+. +.|..+.
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~---Ge~~~i~G~NG~GKTtLLRilaGLl~p---~~G~v~---~~~~~i~ 67 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNA---GEALQITGPNGAGKTTLLRILAGLLRP---DAGEVY---WQGEPIQ 67 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcC---CCEEEEECCCCCcHHHHHHHHHcccCC---CCCeEE---ecCCCCc
Confidence 46788998888999999999999999 999999999999999999999999999 788776 4454443
No 329
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.10 E-value=6.7e-11 Score=119.22 Aligned_cols=67 Identities=25% Similarity=0.287 Sum_probs=56.2
Q ss_pred cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||++.| +++.+|+|+||++++ |+.++|+|+||||||||+++|+|.+ | +.|.+. .+|.++.++
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~---G~~vaIvG~SGsGKSTL~~lL~g~~-p---~~G~I~---i~g~~i~~~ 416 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPA---GQRIALVGPSGAGKTSLLNALLGFL-P---YQGSLK---INGIELREL 416 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCC-C---CCcEEE---ECCEecccC
Confidence 48999999655 567899999999999 9999999999999999999999999 7 455553 367666554
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.10 E-value=8.6e-11 Score=116.11 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=50.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~---Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNP---GEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 479999999999988899999999999 99999999999999999999999764
No 331
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.10 E-value=5.7e-11 Score=104.82 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=52.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++|+++.|+. .++++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~---Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 62 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVAD---GEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIK---VNDQSH 62 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEc
Confidence 468999999974 56899999999 999999999999999999999999988 567654 456544
No 332
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.09 E-value=8.9e-11 Score=116.86 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=51.4
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ 128 (287)
++++|++++|+++.+|+++||++.+ |++++|+||||||||||+++|+|.+ .| ++|.+
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p---~~G~i 59 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEE---GEVLGILGRSGAGKSVLMHVLRGMDQYEP---TSGRI 59 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhhcccCCC---CceEE
Confidence 4789999999888899999999999 9999999999999999999999997 45 55554
No 333
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=9.3e-11 Score=105.90 Aligned_cols=59 Identities=29% Similarity=0.394 Sum_probs=53.5
Q ss_pred ccEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++++++.|++. .+++++|+++.+ |+.++|+|+||||||||+++|+|++.|. +|.+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~---Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v 61 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEK---GERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEV 61 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEE
Confidence 468999999999764 899999999999 9999999999999999999999999994 5554
No 334
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.09 E-value=5.4e-11 Score=110.79 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=44.9
Q ss_pred EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+.|+++.+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 k~y~~~~~l~~vs~~i~~---Ge~~~l~G~NGaGKSTLl~~l~Gl~~p---~~G~i 50 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVRE---GEVFGFLGPNGAGKTTTIRMLTTLLRP---TSGTA 50 (302)
T ss_pred CeeCCeeEEeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 467778899999999999 999999999999999999999999988 55543
No 335
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.08 E-value=1e-10 Score=117.20 Aligned_cols=67 Identities=27% Similarity=0.382 Sum_probs=56.8
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
.++++|++++|++ ..+|+|+||++++ |++++|+|+||||||||+++|+|.+.| ++|.+. .+|.++.+
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~---G~~v~IvG~sGsGKSTLl~lL~gl~~~---~~G~I~---i~g~~i~~ 398 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEP---GETVALVGRSGSGKSTLVNLIPRFYEP---DSGQIL---LDGHDLAD 398 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEE---ECCEeHHh
Confidence 4899999999964 5699999999999 999999999999999999999999998 555553 35555443
No 336
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.08 E-value=6.4e-11 Score=117.08 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=50.8
Q ss_pred EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~ 56 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRP---HSIHALMGENGAGKSTLLKCLFGIYQK---DSGSIL 56 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CceEEE
Confidence 46899999988899999999999 999999999999999999999999987 566553
No 337
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.08 E-value=1.1e-10 Score=117.19 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=54.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~G~~~p---~~G~i 381 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPP---GGIVGIIGPNGAGKSTLFKMITGQEQP---DSGTI 381 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEE
Confidence 479999999999988999999999999 999999999999999999999999877 55554
No 338
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.08 E-value=2.3e-10 Score=111.40 Aligned_cols=87 Identities=22% Similarity=0.309 Sum_probs=67.5
Q ss_pred cccccccCCCcCCCCCCCccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 46 RHRTLNLVPAHVSKDSNAHDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
....+..-..|..-..+..-++++||++.|+ ++++|+|+||++.| |+.++|+||||+||||++++|-+.... .
T Consensus 518 ee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~p---GktvAlVG~SGaGKSTimRlLfRffdv---~ 591 (790)
T KOG0056|consen 518 EEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQP---GKTVALVGPSGAGKSTIMRLLFRFFDV---N 591 (790)
T ss_pred cCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecC---CcEEEEECCCCCchhHHHHHHHHHhhc---c
Confidence 3334444445554444555699999999996 68899999999999 999999999999999999999988776 4
Q ss_pred chhHHHHHhCCCchhhh
Q 023118 125 SDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 125 ~d~~ie~~~~G~~i~~~ 141 (287)
+|.+. .+|++|...
T Consensus 592 sGsI~---iDgqdIrnv 605 (790)
T KOG0056|consen 592 SGSIT---IDGQDIRNV 605 (790)
T ss_pred CceEE---EcCchHHHH
Confidence 66553 367776554
No 339
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.08 E-value=6.2e-11 Score=102.71 Aligned_cols=55 Identities=27% Similarity=0.344 Sum_probs=46.9
Q ss_pred cCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 75 LDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 75 ~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 2 ~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~---~~g~~~ 56 (190)
T TIGR01166 2 PGGPEVLKGLNFAAER---GEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVL---IDGEPL 56 (190)
T ss_pred CCccceecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEE---ECCEEc
Confidence 3566799999999999 999999999999999999999999988 566654 456544
No 340
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.08 E-value=5.6e-09 Score=92.14 Aligned_cols=106 Identities=19% Similarity=0.280 Sum_probs=64.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-----chhhhhhhhchhhhhhhHHHHHH-HhhcC---CCe
Q 023118 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-----SVAQIFKESGEAYFREYESKALQ-KLSLV---PQQ 167 (287)
Q Consensus 97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-----~i~~~~~~~g~~~fr~~e~~~l~-~l~~~---~~~ 167 (287)
|+|+||+||||||+++.|+..+++.+++.|+++.+..... .+.++. ..|...--..-..++. .+... ...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~-~~g~~vp~~~~~~l~~~~i~~~~~~~~~ 80 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYM-EKGELVPDEIVNQLVKERLTQNQDNENG 80 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCcccCCc
Confidence 8899999999999999999999999999999987654221 122221 1222110011112222 22221 122
Q ss_pred EEecCCceEeccccH---Hhhc------CCcEEEEecCHHHHHHHHhhcC
Q 023118 168 VVATGGGAVVRPLNW---RFMR------QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 168 via~ggG~v~~~~~~---~~L~------~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
+|-.|- |.++ +.|. -..+|||++|.+++.+|+..|.
T Consensus 81 ~ilDGf-----Prt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 81 FILDGF-----PRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred EEEeCC-----CCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 333331 2332 2221 2579999999999999998763
No 341
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.07 E-value=1.2e-10 Score=116.90 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=58.1
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|++ +.+|+|+||++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~---Ge~i~IvG~sGsGKSTLlklL~gl~~p---~~G~I~---i~g~~i~~~ 407 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRP---GETVALVGPSGAGKSTLFQLLLRFYDP---QSGRIL---LDGVDLRQL 407 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecC---CCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEE---ECCEEHHhc
Confidence 4899999999963 5699999999999 999999999999999999999999998 456553 366666544
No 342
>PRK14528 adenylate kinase; Provisional
Probab=99.07 E-value=7.5e-09 Score=89.98 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=88.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCch----hhhhhhhchhhhhhhHHHHH-HHhhcC--CC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSV----AQIFKESGEAYFREYESKAL-QKLSLV--PQ 166 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i----~~~~~~~g~~~fr~~e~~~l-~~l~~~--~~ 166 (287)
..|.|+||+||||||+++.|+..+++++++.|+++.... .|..+ ..++ ..|.-.-...-...+ +.+... ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~-~~g~lvp~~~~~~~~~~~l~~~~~~~ 80 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYM-DAGDLVPDSVVIGIIKDRIREADCKN 80 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHH-hCCCccCHHHHHHHHHHHHhCcCccC
Confidence 468999999999999999999999999999999986654 22221 2221 122111000001111 222221 11
Q ss_pred eEEecCCceEeccccH------H-hhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118 167 QVVATGGGAVVRPLNW------R-FMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS 234 (287)
Q Consensus 167 ~via~ggG~v~~~~~~------~-~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~ 234 (287)
.++-.| .|.+. . .+. -..+|||++|.+.+.+|+..|... .....|..+....++..-.
T Consensus 81 g~viDG-----~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~-----~gr~dd~~e~i~~Rl~~y~ 150 (186)
T PRK14528 81 GFLLDG-----FPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEI-----EGRADDNEATIKNRLDNYN 150 (186)
T ss_pred cEEEeC-----CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccc-----cCCCCCCHHHHHHHHHHHH
Confidence 122222 12222 1 221 257899999999999999875321 1111122222233444433
Q ss_pred HHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHH
Q 023118 235 KERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQ 277 (287)
Q Consensus 235 ~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~ 277 (287)
....| .|+..+..+. ||.+ .++++|...|...
T Consensus 151 ~~~~pv~~~y~~~~~~~~----------i~~~-~~~~~v~~~~~~~ 185 (186)
T PRK14528 151 KKTLPLLDFYAAQKKLSQ----------VNGV-GSLEEVTSLIQKE 185 (186)
T ss_pred HHhHHHHHHHHhCCCEEE----------EECC-CCHHHHHHHHHHh
Confidence 34444 5554444442 5655 4899999887654
No 343
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.07 E-value=1.1e-10 Score=111.13 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
||++ |++++|++..+ ++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~iaGl~~p---~~G~I 55 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPA---QGITAIFGRSGAGKTSLINAISGLTRP---QKGRI 55 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 4677 99999987653 89999999 999999999999999999999999988 56654
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.07 E-value=1.3e-10 Score=116.70 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=54.3
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p---~~G~i 379 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPP---GGIVGVIGPNGAGKSTLFRMITGQEQP---DSGTI 379 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCCC---CCeEE
Confidence 479999999999988899999999999 999999999999999999999999887 45544
No 345
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.07 E-value=1.1e-10 Score=117.22 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=59.0
Q ss_pred cEEEcceEEEcCC-----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG-----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~-----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.++++|++++|++ ..+|+|+||++++ |+.++|+||||||||||+++|++.+.| +.|.+. .+|.++.
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~---G~~~aivG~sGsGKSTl~~ll~g~~~p---~~G~i~---~~g~~i~ 407 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQ---GDIVFIVGENGCGKSTLAKLFCGLYIP---QEGEIL---LDGAAVS 407 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEECC
Confidence 4899999999974 2599999999999 999999999999999999999999999 677665 4677665
Q ss_pred hh
Q 023118 140 QI 141 (287)
Q Consensus 140 ~~ 141 (287)
++
T Consensus 408 ~~ 409 (555)
T TIGR01194 408 AD 409 (555)
T ss_pred CC
Confidence 44
No 346
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.07 E-value=1.2e-10 Score=116.49 Aligned_cols=68 Identities=21% Similarity=0.285 Sum_probs=58.3
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|++ +.+|+|+||++++ |+.++|+||||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~---~~g~~i~~~ 385 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQA---GEALAIIGPSGSGKSTLARLIVGIWPP---TSGSVR---LDGADLKQW 385 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEehhhC
Confidence 5999999999953 5799999999999 999999999999999999999999988 566554 367666543
No 347
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.06 E-value=1.3e-10 Score=119.49 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=58.3
Q ss_pred cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|+ +..+|+++||++++ |+.++|+|+||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~---G~~vaivG~sGsGKSTL~~ll~g~~~p---~~G~I~---idg~~i~~~ 524 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKP---GEFIGIVGPSGSGKSTLTKLLQRLYTP---QHGQVL---VDGVDLAIA 524 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEE---ECCEehhhC
Confidence 489999999995 35699999999999 999999999999999999999999998 566654 466666543
No 348
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.06 E-value=2.3e-10 Score=116.56 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=50.4
Q ss_pred ccEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|+ +..+|+++||++.+ |++++|+|+||||||||+++|+|.+.|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~---Ge~~~lvG~nGsGKSTLl~~l~Gll~p 68 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQR---GETLAIVGESGSGKSVTALALMRLLEQ 68 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 4799999999996 35799999999999 999999999999999999999999987
No 349
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.05 E-value=3.4e-09 Score=91.35 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-----chhhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-----SVAQIFKESGEAYFREYESKALQK-LSLVPQQVV 169 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-----~i~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi 169 (287)
+|+|+|++||||||+++.|+..++..+++.|+++.+...+. .+.+++.. |...-......++.. +....
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~---- 75 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPD---- 75 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhccc----
Confidence 38999999999999999999999999999999986654221 22222211 221111111222222 22211
Q ss_pred ecCCceEec--cccH---Hhh----c----CCcEEEEecCHHHHHHHHhhcC
Q 023118 170 ATGGGAVVR--PLNW---RFM----R----QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 170 a~ggG~v~~--~~~~---~~L----~----~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
.+.|.|.+ |.+. ..+ . ...+|||++|.+++.+|+..+.
T Consensus 76 -~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 126 (194)
T cd01428 76 -CKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRR 126 (194)
T ss_pred -ccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 12233332 1221 112 1 2578999999999999998875
No 350
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.05 E-value=1.4e-10 Score=118.16 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=53.3
Q ss_pred ccEEEcceEEEcC-----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLD-----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~-----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|+ ...+|+++||+|.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~---Ge~~~lvG~nGsGKSTLlk~i~Gl~~p---~~G~I~ 382 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWP---GETLSLVGESGSGKSTTGRALLRLVES---QGGEII 382 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCcEEE
Confidence 4799999999996 14699999999999 999999999999999999999999987 455553
No 351
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.7e-10 Score=113.34 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=59.0
Q ss_pred cEEEcceEEEcCCee-eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDGKW-LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~-il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||++.|++++ +|+++||+|++ |+.++|+|+|||||||++|+|-+.+.+ ++..++ +|+++.++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~k---GekVaIvG~nGsGKSTilr~LlrF~d~---sG~I~I----dG~dik~~ 418 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPK---GEKVAIVGSNGSGKSTILRLLLRFFDY---SGSILI----DGQDIKEV 418 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecC---CCEEEEECCCCCCHHHHHHHHHHHhcc---CCcEEE----CCeeHhhh
Confidence 399999999999766 99999999999 999999999999999999999998875 444445 78888776
No 352
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=9.9e-11 Score=116.23 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=53.2
Q ss_pred ccEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+++++|+++.|+ +..+++++||++.+ |++++|+|+||||||||+++|+|.+.|+ ++|.+.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~ 321 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRR---GEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIF 321 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcC---CcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEE
Confidence 4799999999993 45799999999999 9999999999999999999999998743 455543
No 353
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.04 E-value=1.7e-10 Score=97.39 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=60.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++.++||+...+++.+|-++|++|.+ |+++.|+||||||||||+..++|.+.+.|--+|.+. .+++.+.
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~---GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~---l~~~~l~ 70 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAK---GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELW---LNEQRLD 70 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecC---CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEE---ECCeecc
Confidence 57899999999999999999999999 999999999999999999999999999987777664 3454443
No 354
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.04 E-value=1.2e-08 Score=91.90 Aligned_cols=109 Identities=18% Similarity=0.250 Sum_probs=66.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCchhhhh---hhhch----hhhhhhHHHHHHHhhc-C
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSVAQIF---KESGE----AYFREYESKALQKLSL-V 164 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i~~~~---~~~g~----~~fr~~e~~~l~~l~~-~ 164 (287)
...|+|+||+||||||+++.||..+++.++++|+++.+... +.++.... ...|. +..-..-.+.+.++.. .
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~ 85 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDC 85 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhcccc
Confidence 35699999999999999999999999999999999977652 22332221 11221 2222122222222111 1
Q ss_pred CCeEEecCCceEeccccHH---hhc----CCcEEEEecCHHHHHHHHhhc
Q 023118 165 PQQVVATGGGAVVRPLNWR---FMR----QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 165 ~~~via~ggG~v~~~~~~~---~L~----~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
...++-.| .|.+.. .|. -..+|+|++|.+.+.+|+..|
T Consensus 86 ~~g~iLDG-----fPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R 130 (229)
T PTZ00088 86 FKGFILDG-----FPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGR 130 (229)
T ss_pred CceEEEec-----CCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcC
Confidence 12222222 133322 222 257899999999999999876
No 355
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.04 E-value=1.7e-10 Score=116.60 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=56.4
Q ss_pred cEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.++++|++++|++ ..+++++||++++ |+.++|+||||||||||+++|+|.+.| +.|.+. ++|.++.
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~---~~g~~~~ 400 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKA---GQTVAIVGPTGAGKTTLINLLQRVYDP---TVGQIL---IDGIDIN 400 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHccCCCC---CCCEEE---ECCEEhh
Confidence 5899999999975 5799999999999 999999999999999999999999988 566553 3454443
No 356
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.04 E-value=1.9e-10 Score=115.84 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=56.3
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.+++++++++|+. ..+|+++||++++ |++++|+||||||||||+++|+|.+.| +.|.+. .+|.++.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~---G~~~~ivG~sGsGKSTLl~ll~g~~~p---~~G~i~---~~g~~~~ 380 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKP---GQMLGICGPTGSGKSTLLSLIQRHFDV---SEGDIR---FHDIPLT 380 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECC---CCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEE---ECCEEHh
Confidence 4899999999963 5699999999999 999999999999999999999999988 566553 3455443
No 357
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.04 E-value=1.7e-11 Score=107.49 Aligned_cols=60 Identities=25% Similarity=0.295 Sum_probs=56.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+.+..+|+.|+|+.+.+++++||++++ |++++|.||||+||||..-++.|+..| |+|.++
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~---GEiVGLLGPNGAGKTT~Fymi~Glv~~---d~G~i~ 62 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNS---GEIVGLLGPNGAGKTTTFYMIVGLVRP---DSGKIL 62 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcC---CcEEEEECCCCCCceeEEEEEEEEEec---CCceEE
Confidence 468999999999999999999999999 999999999999999999999999999 788774
No 358
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.04 E-value=1e-08 Score=90.32 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
.|+|+|.+||||||+++.|+. +|..++|+|.+..+.+
T Consensus 3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~ 39 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIV 39 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHH
Confidence 699999999999999999997 7999999998754443
No 359
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=2.6e-10 Score=107.81 Aligned_cols=54 Identities=20% Similarity=0.181 Sum_probs=49.5
Q ss_pred ccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++|++++|. ...+|+++||++.+ |++++|+|++|||||||+++|+|...+
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~---Ge~v~IvG~~GsGKSTLl~~L~g~~~~ 134 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKR---NKVTAFIGPSGCGKSTFLRNLNQLNDL 134 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhccccc
Confidence 3799999999995 45799999999999 999999999999999999999998753
No 360
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.04 E-value=1.2e-10 Score=115.45 Aligned_cols=61 Identities=15% Similarity=0.096 Sum_probs=53.1
Q ss_pred ccEEEcceEEEc---CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSL---DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~---~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+++++|+++.| ++..+++++||++.+ |++++|+||||||||||+++|+|.+.|+ ++|.+.
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~ 319 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRR---GEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVF 319 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeC---CcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEE
Confidence 479999999999 346799999999999 9999999999999999999999999853 455543
No 361
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.7e-10 Score=112.88 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=59.9
Q ss_pred cEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.+..+|+++.|++. ++++++||++++ |+.++|+|+||||||||+++|+|.+.+ +.|.+. ++|.++.++
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~---g~~talvG~SGaGKSTLl~lL~G~~~~---~~G~I~---vng~~l~~l 388 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKA---GQLTALVGASGAGKSTLLNLLLGFLAP---TQGEIR---VNGIDLRDL 388 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecC---CcEEEEECCCCCCHHHHHHHHhCcCCC---CCceEE---ECCcccccc
Confidence 45667999999754 899999999999 999999999999999999999999998 677775 578877766
No 362
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.03 E-value=2.4e-10 Score=113.85 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=53.5
Q ss_pred CccEEEcceEEEcC-----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 63 AHDVESGTFCDSLD-----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 63 ~~~l~~~~l~~~~~-----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.++++++|+++.|+ ...+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~---Ge~~~l~G~NGsGKSTLl~~l~Gl~~p---~~G~i~ 342 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKE---GEIFGIVGTSGAGKTTLSKIIAGVLEP---TSGEVN 342 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE
Confidence 34799999999994 25799999999999 999999999999999999999999987 455543
No 363
>PRK08118 topology modulation protein; Reviewed
Probab=99.03 E-value=2.7e-09 Score=91.34 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG 174 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG 174 (287)
..|.|+||+||||||+++.|+..++.++++.|.++... +.... . +......++++...+. .|-.|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-~w~~~-------~----~~~~~~~~~~~~~~~~-wVidG~~ 68 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-NWEGV-------P----KEEQITVQNELVKEDE-WIIDGNY 68 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-CCcCC-------C----HHHHHHHHHHHhcCCC-EEEeCCc
Confidence 46999999999999999999999999999999887221 01111 0 1112223444444444 4445531
Q ss_pred eEeccccH-Hhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118 175 AVVRPLNW-RFMR-QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 175 ~v~~~~~~-~~L~-~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
. ..+ ..+. ...+|||++|.+.+..|+..|
T Consensus 69 ~----~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R 99 (167)
T PRK08118 69 G----GTMDIRLNAADTIIFLDIPRTICLYRAFKR 99 (167)
T ss_pred c----hHHHHHHHhCCEEEEEeCCHHHHHHHHHHH
Confidence 1 111 1222 378999999999999998765
No 364
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.03 E-value=2.1e-10 Score=113.61 Aligned_cols=67 Identities=22% Similarity=0.290 Sum_probs=58.3
Q ss_pred CCccEEEcceEEEcCC-----------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH
Q 023118 62 NAHDVESGTFCDSLDG-----------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE 130 (287)
Q Consensus 62 ~~~~l~~~~l~~~~~~-----------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie 130 (287)
..++++++|+++.|.. ..+++++||++.+ |++++|||.|||||||++|+|+|++.| ++|.++
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~---GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~- 349 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE---GETLGLVGESGSGKSTLARILAGLLPP---SSGSII- 349 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE-
Confidence 4468999999999972 3689999999999 999999999999999999999999999 677765
Q ss_pred HHhCCCc
Q 023118 131 KLMGGTS 137 (287)
Q Consensus 131 ~~~~G~~ 137 (287)
+.|.+
T Consensus 350 --~~g~~ 354 (539)
T COG1123 350 --FDGQD 354 (539)
T ss_pred --EeCcc
Confidence 45654
No 365
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.03 E-value=2.7e-10 Score=105.47 Aligned_cols=57 Identities=25% Similarity=0.371 Sum_probs=50.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..++++|+++. ...+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 38 ~~l~i~nls~~--~~~vL~~vs~~i~~---Ge~~~liG~NGsGKSTLl~~I~Gl~~p---~~G~I 94 (282)
T cd03291 38 NNLFFSNLCLV--GAPVLKNINLKIEK---GEMLAITGSTGSGKTSLLMLILGELEP---SEGKI 94 (282)
T ss_pred CeEEEEEEEEe--cccceeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence 46999999986 46799999999999 999999999999999999999999887 45543
No 366
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=2.8e-10 Score=95.65 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=53.3
Q ss_pred EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++.|.+..+++++++++.+ |++++|+|+||||||||+++|++.+.+ +.|.+. ++|..+
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~---g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~---~~~~~~ 63 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKA---GEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEIL---IDGKDI 63 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEE---ECCEEc
Confidence 57899999888899999999999 999999999999999999999999987 566554 345443
No 367
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.03 E-value=2.2e-10 Score=105.74 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=47.8
Q ss_pred EEEcceEEEc--CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 66 VESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 66 l~~~~l~~~~--~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++|+++.| +...+|+++||+|.+ |++++|+|++|||||||+++|++.+.
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~---Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISP---GQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 7899999999 456799999999999 99999999999999999999999985
No 368
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.03 E-value=1.6e-10 Score=115.32 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=51.7
Q ss_pred ccEEEcceEEEcC-----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLD-----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~-----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++.|+ +..+|+++||++.+ |++++|+||||||||||+++|+|.+ + ++|.+.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~---Ge~~~i~G~nGsGKSTLlk~l~Gl~-~---~~G~i~ 343 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRP---GETLGLVGESGSGKSTTGLALLRLI-N---SQGEIW 343 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcC---CCEEEEECCCCCCHHHHHHHHhCcC-C---CCcEEE
Confidence 4799999999995 35799999999999 9999999999999999999999987 3 355543
No 369
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.02 E-value=2.1e-10 Score=103.21 Aligned_cols=47 Identities=26% Similarity=0.390 Sum_probs=43.8
Q ss_pred CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
...++|+|+||++.+ |+.++|+|+||||||||+|+|||.+.| |+|.+
T Consensus 38 ~~~~aL~disf~i~~---Ge~vGiiG~NGaGKSTLlkliaGi~~P---t~G~v 84 (249)
T COG1134 38 AEFWALKDISFEIYK---GERVGIIGHNGAGKSTLLKLIAGIYKP---TSGKV 84 (249)
T ss_pred ceEEEecCceEEEeC---CCEEEEECCCCCcHHHHHHHHhCccCC---CCceE
Confidence 356899999999999 999999999999999999999999999 78876
No 370
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.02 E-value=1.1e-08 Score=90.49 Aligned_cols=162 Identities=16% Similarity=0.206 Sum_probs=93.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-chhhhhhhhchhhh---------------hhhHH-HH
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-SVAQIFKESGEAYF---------------REYES-KA 157 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-~i~~~~~~~g~~~f---------------r~~e~-~~ 157 (287)
-.|+|+|..||||||+++.++..+|.+++|+|.+..+.+... -+..++...|.+.+ ...+. ..
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~ 86 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKW 86 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHH
Confidence 479999999999999999999989999999999987776332 23445555555544 11110 01
Q ss_pred H-------------HHhhcCC-CeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118 158 L-------------QKLSLVP-QQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS 222 (287)
Q Consensus 158 l-------------~~l~~~~-~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~ 222 (287)
+ +.+.... ..++...... .+..+..-. =..+|++++|.+.+.+|+..|.+-.
T Consensus 87 Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL--~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s----------- 153 (204)
T PRK14733 87 LEDYLHPVINKEIKKQVKESDTVMTIVDIPLL--GPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKN----------- 153 (204)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCeEEEEechh--hhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCC-----------
Confidence 1 1111111 1121111110 011110000 1468999999999999998764211
Q ss_pred hhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 223 YTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 223 ~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
.+++..++...+. .+..-+.||++| |+++.+.++.-.++.+.+++.+
T Consensus 154 ~~~a~~ri~~Q~~-~eek~~~aD~VI------------~N~g~~~~~l~~~~~~~~~~~~ 200 (204)
T PRK14733 154 RQQAVAFINLQIS-DKEREKIADFVI------------DNTELTDQELESKLITTINEIT 200 (204)
T ss_pred HHHHHHHHHhCCC-HHHHHHhCCEEE------------ECcCCCHHHHHHHHHHHHHHHH
Confidence 1122233322221 122223488875 6777688998888888887653
No 371
>PLN02459 probable adenylate kinase
Probab=99.02 E-value=1.3e-08 Score=93.08 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=65.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHH-HhhcCCCeE
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQ-KLSLVPQQV 168 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~-~l~~~~~~v 168 (287)
.+|+|+||+||||||+++.|+..+++.++++|+++.+.. .+.. +..+. ..|.-.=-..-..+++ ++.....
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~-~~G~lVPdeiv~~ll~~~l~~~~~-- 106 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIV-NQGKLVPDEIIFSLLSKRLEAGEE-- 106 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHH-HcCCccCHHHHHHHHHHHHhcccc--
Confidence 568899999999999999999999999999999986654 2222 22221 2222111111112222 2221100
Q ss_pred EecCCceEec--cccHH---hhc---C-CcEEEEecCHHHHHHHHhhc
Q 023118 169 VATGGGAVVR--PLNWR---FMR---Q-GITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 169 ia~ggG~v~~--~~~~~---~L~---~-g~~I~L~~~~e~l~~Ri~~~ 207 (287)
....|.+++ |.+.. .|. . ..+|+|++|.+++.+|+..|
T Consensus 107 -~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR 153 (261)
T PLN02459 107 -EGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGR 153 (261)
T ss_pred -cCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhcc
Confidence 011233332 44432 222 2 67999999999999999876
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.01 E-value=3.4e-10 Score=113.01 Aligned_cols=63 Identities=25% Similarity=0.306 Sum_probs=56.3
Q ss_pred CCCccEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 61 SNAHDVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 61 ~~~~~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+..+++++|+++.|++ +.+++++||.+.+ |++|+|+||||+|||||+|+|++.+++ ++|.+.
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~---g~riaiiG~NG~GKSTLlk~l~g~~~~---~~G~v~ 380 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDR---GDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVK 380 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecC---CCEEEEECCCCCCHHHHHHHHhhhccc---CCceEE
Confidence 44568999999999965 6899999999999 999999999999999999999999998 466553
No 373
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.01 E-value=7e-09 Score=89.91 Aligned_cols=38 Identities=34% Similarity=0.575 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
.|+|+|.+||||||+++.|+...+++++|+|.+..+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~ 38 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVV 38 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHH
Confidence 38999999999999999999987799999999976655
No 374
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.00 E-value=2.2e-08 Score=85.55 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHHHH---HhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYVEK---LMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVA 170 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~ie~---~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via 170 (287)
..++|+|.+|+||||+++.+.+.+ ....+..|++.-+ ..+.....+..+..-.+..+....++.+.+..+...++.
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~iiv 84 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMRKLPLENQRELQAEAAKRIAEMALEIIV 84 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHhcCCHHHHHHHHHHHHHHHHHhhhceEE
Confidence 689999999999999999999999 7777888877322 222223333333444555566666667776665543444
Q ss_pred cCCceEecccc---------HHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH-HHHhh
Q 023118 171 TGGGAVVRPLN---------WRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK-ERSEA 240 (287)
Q Consensus 171 ~ggG~v~~~~~---------~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~-~R~~~ 240 (287)
.+.+++-.|.. ...|...++|.|.++|+.++.|-.++....|+.... +++.+..+ .|...
T Consensus 85 DtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~----------e~i~eHqe~nR~aA 154 (189)
T COG2019 85 DTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESV----------EEIREHQEMNRAAA 154 (189)
T ss_pred eccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccH----------HHHHHHHHHHHHHH
Confidence 44444433321 233445788999999999888866554455654331 33333333 34444
Q ss_pred hhh---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 241 YAN---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 241 Y~~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
|.. ..++|. ++...+-.|++.+.+|+..|+.
T Consensus 155 ~a~A~~~gatVk---------IV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 155 MAYAILLGATVK---------IVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHHHHhCCeEE---------EEeCCCCCHHHHHHHHHHHHhc
Confidence 332 345553 2556677999999999988763
No 375
>PLN03073 ABC transporter F family; Provisional
Probab=99.00 E-value=3.8e-10 Score=116.58 Aligned_cols=59 Identities=20% Similarity=0.200 Sum_probs=53.4
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|+ ...+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~---Ge~i~LvG~NGsGKSTLLk~L~Gll~p---~~G~I 566 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDL---DSRIAMVGPNGIGKSTILKLISGELQP---SSGTV 566 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCceE
Confidence 5799999999996 45799999999999 999999999999999999999999988 55554
No 376
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.00 E-value=1.8e-10 Score=99.38 Aligned_cols=61 Identities=21% Similarity=0.176 Sum_probs=56.9
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+.+.+.++++.|+...-.+++||++.| |+..+|+|.||||||||++.|++.+.| |.|.+.
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~P---GeVLgiVGESGSGKtTLL~~is~rl~p---~~G~v~ 64 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYP---GEVLGIVGESGSGKTTLLKCISGRLTP---DAGTVT 64 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecC---CcEEEEEecCCCcHHhHHHHHhcccCC---CCCeEE
Confidence 4689999999999998899999999999 999999999999999999999999999 777664
No 377
>PRK14529 adenylate kinase; Provisional
Probab=99.00 E-value=1.7e-08 Score=90.49 Aligned_cols=106 Identities=19% Similarity=0.299 Sum_probs=66.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch----hhhhhhhchhhhhhhHHHHHHH-hhcCCCeEE
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV----AQIFKESGEAYFREYESKALQK-LSLVPQQVV 169 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i----~~~~~~~g~~~fr~~e~~~l~~-l~~~~~~vi 169 (287)
+|+|+||+||||||+++.|+..++..++++|+++.+... |..+ .++. ..|.-..-+.-..++.+ +....
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~---- 76 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDG---- 76 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccC----
Confidence 589999999999999999999999999999999876542 2222 2222 23333322222233332 22211
Q ss_pred ecCCceEec--cccHH-------hhc-----CCcEEEEecCHHHHHHHHhhcC
Q 023118 170 ATGGGAVVR--PLNWR-------FMR-----QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 170 a~ggG~v~~--~~~~~-------~L~-----~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
..|.+++ |.+.. .+. -..+|+|++|.+++.+|+..|.
T Consensus 77 --~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 77 --KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred --CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 1233332 33322 121 1578999999999999999863
No 378
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.00 E-value=2e-10 Score=114.16 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|+++.|+ .+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 264 ~~l~~~~l~~~~~--~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~p---~~G~I~---~~g~~~ 327 (510)
T PRK09700 264 TVFEVRNVTSRDR--KKVRDISFSVCR---GEILGFAGLVGSGRTELMNCLFGVDKR---AGGEIR---LNGKDI 327 (510)
T ss_pred cEEEEeCccccCC--CcccceeEEEcC---CcEEEEECCCCCCHHHHHHHHhCCCcC---CCCeEE---ECCEEC
Confidence 4799999998874 389999999999 999999999999999999999999988 566664 345443
No 379
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.00 E-value=3e-10 Score=108.19 Aligned_cols=51 Identities=22% Similarity=0.236 Sum_probs=46.0
Q ss_pred ceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 70 TFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 70 ~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|++++|++..+ ++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 4 ~l~~~~~~~~~--~isl~i~~---Gei~~l~G~nGsGKSTLl~~iaGl~~p---~~G~I 54 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPG---QGVTAIFGRSGSGKTTLIRLIAGLTRP---DEGEI 54 (354)
T ss_pred EEEEEECCEEE--EEEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 78999987664 89999999 999999999999999999999999987 56654
No 380
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.00 E-value=3e-10 Score=101.99 Aligned_cols=51 Identities=27% Similarity=0.256 Sum_probs=46.2
Q ss_pred EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+.|+...+|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 29 ~~~~~~~il~~vs~~i~~---Ge~~~i~G~NGsGKSTLl~~i~Gl~~p---~~G~i~ 79 (236)
T cd03267 29 RKYREVEALKGISFTIEK---GEIVGFIGPNGAGKTTTLKILSGLLQP---TSGEVR 79 (236)
T ss_pred cccCCeeeeeceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEE
Confidence 677888899999999999 999999999999999999999999988 566554
No 381
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.00 E-value=1.1e-09 Score=111.72 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=94.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
+..|.+.|++||||||+++.|+..+ ++.|+|+|.+-.....+....+ ......++.. .++.+.+......|
T Consensus 460 ~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~---~~r~~~~~~l-~~~a~~~~~~G~~V 535 (632)
T PRK05506 460 PATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSD---ADRVENIRRV-AEVARLMADAGLIV 535 (632)
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCH---HHHHHHHHHH-HHHHHHHHhCCCEE
Confidence 7899999999999999999999886 3578999987633222211111 1112222222 11222222222223
Q ss_pred EecCCceEeccccHHh----hcC-C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118 169 VATGGGAVVRPLNWRF----MRQ-G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA 242 (287)
Q Consensus 169 ia~ggG~v~~~~~~~~----L~~-g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~ 242 (287)
+.. ... .....++. +.+ + .+|||++|++.+.+|. .||++..... +.+..++..|.++|.
T Consensus 536 ivd-a~~-~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~------~r~L~~~~~~-------~~l~~l~~~r~~y~~ 600 (632)
T PRK05506 536 LVS-FIS-PFREERELARALHGEGEFVEVFVDTPLEVCEARD------PKGLYAKARA-------GEIKNFTGIDSPYEA 600 (632)
T ss_pred EEE-CCC-CCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhC------Ccchhhhccc-------cccccccccccCCCC
Confidence 332 111 11122222 222 3 6799999999999992 3787753221 235566777888553
Q ss_pred -h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 243 -N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 243 -~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
. ++++ ||+++.++++++++|++++..
T Consensus 601 P~~a~~~------------Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 601 PENPELR------------LDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred CCCCeEE------------EeCCCCCHHHHHHHHHHHHHH
Confidence 3 5665 488889999999999999864
No 382
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.99 E-value=1.7e-09 Score=94.28 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc---CCccccchhHH
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL---DYTFADSDKYV 129 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d~~i 129 (287)
.|+|+|++||||||+++.|++.+ ...++..|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYY 37 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 48999999999999999999987 24456666654
No 383
>PLN03073 ABC transporter F family; Provisional
Probab=98.99 E-value=5.4e-10 Score=115.50 Aligned_cols=52 Identities=29% Similarity=0.332 Sum_probs=49.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.+|.++|++++|++..+|+++||+|.+ |++++|||+||||||||+++|+|..
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~---Ge~~gLvG~NGsGKSTLLr~l~g~~ 227 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAF---GRHYGLVGRNGTGKTTFLRYMAMHA 227 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECC---CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999988899999999999 9999999999999999999999854
No 384
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.98 E-value=2e-10 Score=109.92 Aligned_cols=50 Identities=22% Similarity=0.391 Sum_probs=45.2
Q ss_pred EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|.|+++.+++|+||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 ~~~~~~~~l~~vs~~i~~---Gei~~l~G~sGsGKSTLLr~L~Gl~~p---~~G~I 50 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAK---GEIFVIMGLSGSGKSTTVRMLNRLIEP---TAGQI 50 (363)
T ss_pred CccCCceeEEeeEEEEcC---CCEEEEECCCCChHHHHHHHHhCCCCC---CceEE
Confidence 467888899999999999 999999999999999999999999988 45544
No 385
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.98 E-value=2.9e-08 Score=87.85 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL 132 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~ 132 (287)
-.|+|+|++||||||++++|++ +|+..+|+|.+..+.
T Consensus 6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~ 42 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKEL 42 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHH
Confidence 4689999999999999999997 899999999775444
No 386
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.97 E-value=6.5e-10 Score=110.56 Aligned_cols=59 Identities=17% Similarity=0.220 Sum_probs=53.0
Q ss_pred ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++ +.+|+++||++.+ |++++|+||||||||||+++|+|.+.| +.|.+
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~---GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI 81 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPE---GEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTV 81 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeC---CCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 47999999999976 4699999999999 999999999999999999999999987 45544
No 387
>PLN03232 ABC transporter C family member; Provisional
Probab=98.96 E-value=4.9e-10 Score=123.92 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=59.7
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||+++|+. .++|+|+||++++ |+.|+|+|++|||||||+++|.+.+.| +.|.+. .+|.++.++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~---GekvaIVG~SGSGKSTL~~lL~rl~~p---~~G~I~---IdG~di~~i 1303 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSP---SEKVGVVGRTGAGKSSMLNALFRIVEL---EKGRIM---IDDCDVAKF 1303 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcC---CCceEE---ECCEEhhhC
Confidence 5999999999953 4799999999999 999999999999999999999999999 567664 477777655
No 388
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=4.9e-10 Score=118.95 Aligned_cols=68 Identities=29% Similarity=0.424 Sum_probs=57.8
Q ss_pred ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
..++++||+|+|.. ..+|+++||.+++ |+.++|||||||||||+.++|.+.+.| +.|.+. .+|.++.+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~---G~~valVG~SGsGKST~i~LL~RfydP---~~G~V~---idG~di~~ 419 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPS---GQTVALVGPSGSGKSTLIQLLARFYDP---TSGEVL---IDGEDIRN 419 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCC---CCEEEEECCCCCCHHHHHHHHHHhcCC---CCceEE---EcCccchh
Confidence 36999999999974 4699999999999 999999999999999999999999999 455553 34555544
No 389
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.96 E-value=6.2e-10 Score=122.74 Aligned_cols=53 Identities=25% Similarity=0.150 Sum_probs=49.9
Q ss_pred cEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.++++||+|+|. +.++|+++||++++ |++++|+|+||||||||+++|.+.+.|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~---G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDS---KKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcC---CCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 499999999995 35799999999999 999999999999999999999999988
No 390
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.96 E-value=5.5e-10 Score=101.92 Aligned_cols=53 Identities=28% Similarity=0.285 Sum_probs=47.1
Q ss_pred cceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 69 GTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 69 ~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+.. .+++++++ +.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~---Ge~~~IvG~nGsGKSTLlk~l~Gl~~p---~~G~I 57 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PRE---GQVLGLVGPNGIGKSTALKILAGKLKP---NLGKF 57 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCC---CCEEEEECCCCCCHHHHHHHHhCCcCC---CCceE
Confidence 4788999765 59999994 889 999999999999999999999999998 57765
No 391
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.95 E-value=5.3e-08 Score=83.56 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|.|++||||||+++.|++.+
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999988
No 392
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=6.9e-10 Score=97.89 Aligned_cols=60 Identities=18% Similarity=0.195 Sum_probs=49.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+.. +|+++|+++.+ |+||++.+ ++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~----e~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 61 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE----EVTGIFGASGAGKSTLLRCIAGLEKP---DGGTIV---LNGTVL 61 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc----eeEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEec
Confidence 344 89999998766 99999984 89999999999999999999999987 566654 355544
No 393
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.95 E-value=3.7e-09 Score=86.62 Aligned_cols=110 Identities=23% Similarity=0.263 Sum_probs=65.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh-hhhhchhhhhhhHHHHHHHh-hcCCCeEEecCC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI-FKESGEAYFREYESKALQKL-SLVPQQVVATGG 173 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~-~~~~g~~~fr~~e~~~l~~l-~~~~~~via~gg 173 (287)
.|.++||+||||||+++.|++.+++.+++.|.+..... +...... +...........-...++.. ......|+..+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~ 79 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLA-GEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN 79 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHC-CSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHc-ccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc
Confidence 47899999999999999999999999999999987665 3221111 00011111222222334333 333333443222
Q ss_pred ceEeccccHHhh----c-CC---cEEEEecCHHHHHHHHhhcCC
Q 023118 174 GAVVRPLNWRFM----R-QG---ITVFLNVPLDALARRIAAVGT 209 (287)
Q Consensus 174 G~v~~~~~~~~L----~-~g---~~I~L~~~~e~l~~Ri~~~~~ 209 (287)
.....+..+ + .| .+|||++|.+++.+|+..|..
T Consensus 80 ---~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (143)
T PF13671_consen 80 ---LSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNR 120 (143)
T ss_dssp ----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHC
T ss_pred ---CCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCC
Confidence 222333222 2 24 579999999999999988753
No 394
>PLN03130 ABC transporter C family member; Provisional
Probab=98.95 E-value=5.7e-10 Score=124.06 Aligned_cols=68 Identities=13% Similarity=0.251 Sum_probs=58.5
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||+++|.. ..+|+|+||++++ |++|+|+|++|||||||+++|.+.+.| +.|.+. .+|.++.++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~---GekVaIVGrSGSGKSTLl~lL~rl~~p---~~G~I~---IDG~dI~~i 1306 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISP---SEKVGIVGRTGAGKSSMLNALFRIVEL---ERGRIL---IDGCDISKF 1306 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCcCCC---CCceEE---ECCEecccC
Confidence 5999999999963 4699999999999 999999999999999999999999998 566654 366666543
No 395
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.95 E-value=6.2e-10 Score=103.65 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=57.6
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC-C-ccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD-Y-TFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~-~-~fid~d~~ie~~~~G~~i 138 (287)
+++++||+..|.. ..+++|+||++.+ |++++|||.|||||||+++.|.+++. + ..+.+|.++ ++|.++
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~---GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~---f~g~~l 74 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKK---GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL---FDGKDL 74 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcC---CcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE---ECCccc
Confidence 3789999988842 5799999999999 99999999999999999999999997 3 466676664 466654
Q ss_pred h
Q 023118 139 A 139 (287)
Q Consensus 139 ~ 139 (287)
.
T Consensus 75 ~ 75 (316)
T COG0444 75 L 75 (316)
T ss_pred c
Confidence 3
No 396
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.94 E-value=6.9e-10 Score=108.06 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=60.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
..+++.+++|.|++..+++++||++.+ |++-+|.|.||+|||||+++|.|.+.| |+|.++ ++|+.+
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~---GeIHaLLGENGAGKSTLm~iL~G~~~P---~~GeI~---v~G~~v 68 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKK---GEIHALLGENGAGKSTLMKILFGLYQP---DSGEIR---VDGKEV 68 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecC---CcEEEEeccCCCCHHHHHHHHhCcccC---CcceEE---ECCEEe
Confidence 358999999999999999999999999 999999999999999999999999999 788886 567654
No 397
>PTZ00243 ABC transporter; Provisional
Probab=98.93 E-value=7.3e-10 Score=122.88 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=59.3
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.|+++||+++|.+ ..+|+|+||+|++ |+.|+|+|++|||||||+++|.+.+.+ ++|.+. .+|.++.++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~---GekVaIVGrTGSGKSTLl~lLlrl~~p---~~G~I~---IDG~di~~i 1377 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAP---REKVGIVGRTGSGKSTLLLTFMRMVEV---CGGEIR---VNGREIGAY 1377 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEcccC
Confidence 5999999999964 4599999999999 999999999999999999999999998 567664 467776554
No 398
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.93 E-value=9.3e-10 Score=121.33 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=53.5
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.++++||+++|+. .++|+++||++++ |++++|+||||||||||+++|++.+.| +.|.+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~---Ge~vaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~ 443 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTE---GKTYAFVGESGCGKSTILKLIERLYDP---TEGDII 443 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcC---CCEEEEECCCCCCHHHHHHHHHHhccC---CCCeEE
Confidence 5899999999974 3699999999999 999999999999999999999999999 566654
No 399
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.92 E-value=3.3e-08 Score=86.72 Aligned_cols=39 Identities=31% Similarity=0.477 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
..|+|+|++||||||+++.|+..+|.+++|+|.+..+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~ 40 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREAL 40 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence 369999999999999999999998999999999976654
No 400
>PLN02165 adenylate isopentenyltransferase
Probab=98.91 E-value=3.2e-09 Score=100.16 Aligned_cols=113 Identities=19% Similarity=0.393 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH--------------HHHHhCCCc---hhhhhhhhch---hhhhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY--------------VEKLMGGTS---VAQIFKESGE---AYFREY 153 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~--------------ie~~~~G~~---i~~~~~~~g~---~~fr~~ 153 (287)
|..|+|+||+|||||||+..||+.++..++++|.+ .++.. |.+ +..+....+. ..|++.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~-gv~Hhli~~~~~~~~~~sv~~F~~~ 121 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRR-GVPHHLLGELNPDDGELTASEFRSL 121 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHc-CCChhhhheeccccceeeHHHHHHH
Confidence 88999999999999999999999999999999988 33332 444 3223222222 677777
Q ss_pred HHHHHHHhhcCCCeEEecCCce-----Eec----cccHHh----------hc-CCcEEEEecCHHHHHHHHhhc
Q 023118 154 ESKALQKLSLVPQQVVATGGGA-----VVR----PLNWRF----------MR-QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 154 e~~~l~~l~~~~~~via~ggG~-----v~~----~~~~~~----------L~-~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
....++++......+|.+||+- ++. |..... ++ ...++||+.+.+.+.+||..|
T Consensus 122 a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~R 195 (334)
T PLN02165 122 ASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKR 195 (334)
T ss_pred HHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHH
Confidence 7778888776666778888742 111 111000 11 235789999999999999875
No 401
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.91 E-value=1.3e-09 Score=99.82 Aligned_cols=40 Identities=30% Similarity=0.448 Sum_probs=38.1
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+|+++||++.+ |++++|+||||||||||+++|+|.+.|
T Consensus 37 ~~il~~is~~i~~---Ge~~~liG~NGsGKSTLlk~L~Gl~~p 76 (264)
T PRK13546 37 FFALDDISLKAYE---GDVIGLVGINGSGKSTLSNIIGGSLSP 76 (264)
T ss_pred eEEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4589999999999 999999999999999999999999887
No 402
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.91 E-value=9.5e-10 Score=121.86 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=59.7
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||+++|+. ..+|+|+||++++ |+.|+|+|++|||||||+++|.+.+.+ +.|.+. .+|.++.++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~---GekiaIVGrTGsGKSTL~~lL~rl~~~---~~G~I~---IdG~dI~~i 1353 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHG---GEKVGIVGRTGAGKSSLTLGLFRINES---AEGEII---IDGLNIAKI 1353 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCccC---CCCeEE---ECCEEcccc
Confidence 5999999999964 4699999999999 999999999999999999999999998 566664 477777655
No 403
>PLN02422 dephospho-CoA kinase
Probab=98.91 E-value=4.8e-08 Score=88.16 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
.|+|+|..||||||+++.|+ .+|..++|+|.+..+.+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~ 39 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVL 39 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHH
Confidence 69999999999999999999 57999999999966654
No 404
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.91 E-value=2e-08 Score=87.75 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
|+.|+|+||+|||||||++.|++.++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 99999999999999999999999875
No 405
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.90 E-value=1.7e-08 Score=93.27 Aligned_cols=115 Identities=18% Similarity=0.288 Sum_probs=68.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHHHHHhCCCchhhh-hhhhchhhhhhhHHHHHHHhhcC-CCeEEec
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYVEKLMGGTSVAQI-FKESGEAYFREYESKALQKLSLV-PQQVVAT 171 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~ie~~~~G~~i~~~-~~~~g~~~fr~~e~~~l~~l~~~-~~~via~ 171 (287)
..|.++|++||||||+++.|+..+ ++.+++.|.+.+..........+ +...++...+......+...... ...|+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~ 82 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD 82 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence 578899999999999999999999 89999999987655422111111 11112222332333333333222 3334433
Q ss_pred CCceEeccccHHhh-cC-C---cEEEEecCHHHHHHHHhhcCC
Q 023118 172 GGGAVVRPLNWRFM-RQ-G---ITVFLNVPLDALARRIAAVGT 209 (287)
Q Consensus 172 ggG~v~~~~~~~~L-~~-g---~~I~L~~~~e~l~~Ri~~~~~ 209 (287)
..........+..+ +. + .+|||++|.+.+.+|+..|+.
T Consensus 83 ~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 125 (300)
T PHA02530 83 TNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGE 125 (300)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCc
Confidence 33322222223222 22 3 269999999999999998753
No 406
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.90 E-value=3.8e-10 Score=92.09 Aligned_cols=51 Identities=31% Similarity=0.478 Sum_probs=43.2
Q ss_pred ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
|+++|+++.+ |++++|+|+||||||||+++|+|...+ +.|.+. ++|.++..
T Consensus 1 L~~v~~~i~~---g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~---~~~~~~~~ 51 (137)
T PF00005_consen 1 LKNVSLEIKP---GEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSIL---INGKDISD 51 (137)
T ss_dssp EEEEEEEEET---TSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEE---ETTEEGTT
T ss_pred CCceEEEEcC---CCEEEEEccCCCccccceeeecccccc---cccccc---cccccccc
Confidence 6899999999 999999999999999999999999888 566654 35655543
No 407
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.90 E-value=1e-09 Score=97.33 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=39.9
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+|+|+||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 1 ~vl~~vs~~i~~---Ge~~~l~G~NGsGKSTLlk~i~Gl~~~---~sG~i 44 (213)
T PRK15177 1 VVLDKTDFVMGY---HEHIGILAAPGSGKTTLTRLLCGLDAP---DEGDF 44 (213)
T ss_pred CeeeeeeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCccC---CCCCE
Confidence 378999999999 999999999999999999999999877 56654
No 408
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.90 E-value=1.7e-09 Score=111.01 Aligned_cols=58 Identities=22% Similarity=0.298 Sum_probs=52.1
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++|+++.|+ +..+++++||++++ |++++|+||||||||||+++|+|.+.+ ++|.+
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~---Ge~~~IvG~nGsGKSTLl~lL~Gl~~~---~~G~i 509 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPS---GNHLLICGPNGCGKSSLFRILGELWPV---YGGRL 509 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCeE
Confidence 599999999994 56799999999999 999999999999999999999999876 45544
No 409
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.89 E-value=9.6e-08 Score=83.98 Aligned_cols=159 Identities=17% Similarity=0.148 Sum_probs=87.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch-hhhhhhhchhhhhhh----------------HH-HH
Q 023118 97 LFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV-AQIFKESGEAYFREY----------------ES-KA 157 (287)
Q Consensus 97 i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i-~~~~~~~g~~~fr~~----------------e~-~~ 157 (287)
|+|+|++||||||++++|++ +|..++|+|.+....+. |..+ ..+....|...+... +. ..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~ 80 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKA 80 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHH
Confidence 79999999999999999987 58999999998655542 3322 222222333332110 00 01
Q ss_pred HHHh-------------h--cCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118 158 LQKL-------------S--LVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS 222 (287)
Q Consensus 158 l~~l-------------~--~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~ 222 (287)
+.++ . .....++...... .+..+..+. ..+||+++|++.+.+|+..|++.+
T Consensus 81 L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL--~E~~~~~~~-D~vi~V~a~~e~r~~RL~~R~g~s----------- 146 (196)
T PRK14732 81 LNELIHPLVRKDFQKILQTTAEGKLVIWEVPLL--FETDAYTLC-DATVTVDSDPEESILRTISRDGMK----------- 146 (196)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeee--eEcCchhhC-CEEEEEECCHHHHHHHHHHcCCCC-----------
Confidence 1111 0 0111222222211 122222111 578999999999999998763211
Q ss_pred hhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 223 YTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 223 ~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
.+++..++...+ ...+.-+.||++| ++++ ++++...++.+.++++++.
T Consensus 147 ~e~a~~ri~~Q~-~~~~k~~~aD~vI------------~N~~-~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 147 KEDVLARIASQL-PITEKLKRADYIV------------RNDG-NREGLKEECKILYSTLLKK 194 (196)
T ss_pred HHHHHHHHHHcC-CHHHHHHhCCEEE------------ECCC-CHHHHHHHHHHHHHHHHHh
Confidence 112223332211 1112222388776 4544 8999999999888887764
No 410
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.89 E-value=1.3e-09 Score=111.58 Aligned_cols=58 Identities=28% Similarity=0.288 Sum_probs=52.4
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+. ..+|+++||++.+ |++++|+|+||||||||+++|+|.+.+ ++|.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~---Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i 65 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYA---GEMVAIVGASGSGKSTLMNILGCLDKP---TSGTY 65 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEE
Confidence 6999999999953 4799999999999 999999999999999999999999987 55544
No 411
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.89 E-value=7.9e-10 Score=109.34 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=51.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+++++|+++.+ ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~ 306 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHK---GEILGIAGLVGAKRTDIVETLFGIREK---SAGTIT 306 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeC---CcEEEEecCCCCCHHHHHHHHcCCCcC---CccEEE
Confidence 479999999874 4599999999999 999999999999999999999999988 566554
No 412
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.88 E-value=7.9e-10 Score=96.04 Aligned_cols=76 Identities=22% Similarity=0.331 Sum_probs=60.3
Q ss_pred ccEEEcceEEEcCC---------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC
Q 023118 64 HDVESGTFCDSLDG---------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG 134 (287)
Q Consensus 64 ~~l~~~~l~~~~~~---------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~ 134 (287)
+.++++|++|.|-. ..+++.+||+++. |+.++|+|.||||||||+|+|+|...|+ +|.+. ++
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~---~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il---~n 73 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLRE---GQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEIL---IN 73 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecC---CcEEEEEccCCCcHhHHHHHHhcccCCC---CceEE---EC
Confidence 46899999988842 3589999999999 9999999999999999999999999994 66665 46
Q ss_pred CCchhhhhhhhchhhhhhh
Q 023118 135 GTSVAQIFKESGEAYFREY 153 (287)
Q Consensus 135 G~~i~~~~~~~g~~~fr~~ 153 (287)
|..+ ++|.-.||..
T Consensus 74 ~~~L-----~~~Dy~~R~k 87 (267)
T COG4167 74 DHPL-----HFGDYSFRSK 87 (267)
T ss_pred Cccc-----cccchHhhhh
Confidence 6554 2344455543
No 413
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.88 E-value=1.4e-09 Score=94.39 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=48.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++.+.+|.+.|+..+. .+++.|+. |++++|+||||+|||||+++|||...| .+|.+.
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~---ge~vAi~GpSGaGKSTLLnLIAGF~~P---~~G~i~ 57 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPA---GEIVAILGPSGAGKSTLLNLIAGFETP---ASGEIL 57 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecC---CcEEEEECCCCccHHHHHHHHHhccCC---CCceEE
Confidence 3568899999986554 56788999 999999999999999999999999999 566553
No 414
>PRK13409 putative ATPase RIL; Provisional
Probab=98.87 E-value=2.5e-09 Score=108.40 Aligned_cols=58 Identities=29% Similarity=0.386 Sum_probs=52.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.|++. .|+++|+++.+ |++++|+||||||||||+++|+|.+.| +.|.+
T Consensus 339 ~~l~~~~ls~~~~~~-~l~~~s~~i~~---Geiv~l~G~NGsGKSTLlk~L~Gl~~p---~~G~I 396 (590)
T PRK13409 339 TLVEYPDLTKKLGDF-SLEVEGGEIYE---GEVIGIVGPNGIGKTTFAKLLAGVLKP---DEGEV 396 (590)
T ss_pred eEEEEcceEEEECCE-EEEecceEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEE
Confidence 479999999999875 48999999999 999999999999999999999999987 55544
No 415
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.86 E-value=2.2e-08 Score=86.59 Aligned_cols=154 Identities=23% Similarity=0.330 Sum_probs=83.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcc--ccchhHHHHHhCCCchhhh-hh-----hhchhhhhhhHHH---HHHHhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTF--ADSDKYVEKLMGGTSVAQI-FK-----ESGEAYFREYESK---ALQKLS 162 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~f--id~d~~ie~~~~G~~i~~~-~~-----~~g~~~fr~~e~~---~l~~l~ 162 (287)
|++|+|-|+|-|||||+++.|...+.-+| +..|.++..+..+...... +. ..+...++..... .++.++
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998776 5667776533211111000 00 0112344444433 334444
Q ss_pred cCCCeEEecCCceEecc----ccH-HhhcC--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 163 LVPQQVVATGGGAVVRP----LNW-RFMRQ--GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 163 ~~~~~via~ggG~v~~~----~~~-~~L~~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
.....||..+ ++..+ +.| ++|.. -.+|-+.+|++++.+|=..|++ |+.-. .+ .
T Consensus 81 ~aG~~VIvD~--v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgD--R~~G~-----------a~-----~ 140 (174)
T PF07931_consen 81 RAGNNVIVDD--VFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGD--RPIGL-----------AA-----W 140 (174)
T ss_dssp HTT-EEEEEE----TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTS--SSTTH-----------HH-----H
T ss_pred hCCCCEEEec--CccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCC--cchHH-----------HH-----H
Confidence 4555566542 12222 123 33432 2568889999999999988874 54321 00 0
Q ss_pred HHHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 236 ERSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 236 ~R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
+-+..|+ .+|+.| ||+.+||+|.|+.|++.++
T Consensus 141 q~~~Vh~~~~YDleV------------DTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 141 QAEHVHEGGRYDLEV------------DTSATSPEECAREILARLE 174 (174)
T ss_dssp HTTGGGTT---SEEE------------ETTSS-HHHHHHHHHTT--
T ss_pred HHhhcccCCCCCEEE------------ECCCCCHHHHHHHHHHHhC
Confidence 1112333 367765 9999999999999998763
No 416
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.86 E-value=1.9e-09 Score=114.58 Aligned_cols=68 Identities=28% Similarity=0.356 Sum_probs=57.5
Q ss_pred cEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
-++++||+|.|. +.++|+|+|+++++ |+.++|||||||||||+..+|-+.++| +.|.+. .+|.++.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~---GqTvALVG~SGsGKSTvI~LLeRfYdp---~~G~V~---IDg~dik~l 1057 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRA---GQTVALVGPSGSGKSTVISLLERFYDP---DAGKVK---IDGVDIKDL 1057 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecC---CCEEEEECCCCCCHHHHHHHHHHhcCC---CCCeEE---ECCcccccC
Confidence 499999999997 45699999999999 999999999999999999999999988 566553 245555443
No 417
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.85 E-value=1.2e-09 Score=105.13 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=47.6
Q ss_pred cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++.+.||...+|+|+||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~---Gei~~I~G~nGsGKSTLlr~L~Gl~~p---~~G~I 81 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEE---GEICVLMGLSGSGKSSLLRAVNGLNPV---SRGSV 81 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEE
Confidence 3466788888999999999999 999999999999999999999999988 45543
No 418
>PLN03211 ABC transporter G-25; Provisional
Probab=98.85 E-value=1.2e-09 Score=112.06 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=47.3
Q ss_pred EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+|++++|+++.+|+|+|+++++ |+.++|+||||||||||+++|+|.+.+
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~---Ge~~aI~GpnGaGKSTLL~iLaG~~~~ 120 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASP---GEILAVLGPSGSGKSTLLNALAGRIQG 120 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 356788899888999999999999 999999999999999999999999876
No 419
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.85 E-value=2e-09 Score=120.89 Aligned_cols=59 Identities=22% Similarity=0.284 Sum_probs=53.8
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++ +.+|+++||.+++ |++++|+|||||||||++|+|+|.+.| ++|.+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~---GEi~gLLG~NGAGKTTLlkmL~Gll~p---tsG~I 1996 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRP---GECFGLLGVNGAGKTTTFKMLTGDTTV---TSGDA 1996 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcC---CcEEEEECCCCCcHHHHHHHHhCCCCC---CccEE
Confidence 47999999999985 6799999999999 999999999999999999999999988 55554
No 420
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.85 E-value=2.9e-08 Score=87.30 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC---CccccchhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD---YTFADSDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~---~~fid~d~~i 129 (287)
+..|+|+|++|||||||++.|++.++ ..+++.|.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 67999999999999999999999883 3456777664
No 421
>PLN02842 nucleotide kinase
Probab=98.84 E-value=9.5e-08 Score=94.66 Aligned_cols=173 Identities=15% Similarity=0.097 Sum_probs=90.5
Q ss_pred EEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHHHhhcC----CCeEE
Q 023118 99 LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQKLSLV----PQQVV 169 (287)
Q Consensus 99 LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~----~~~vi 169 (287)
|+|++||||||+++.|+..++..++++|+++.... ++.+ +.+++ ..|...-...-..++.+-... ...+|
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l-~~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFM-NSGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 79999999999999999999999999999876543 2322 33332 222111000111111111111 11122
Q ss_pred ecCCceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCC-----------CCCCc-------CCCCcchhhHH
Q 023118 170 ATGGGAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTD-----------SFPLL-------DYDSADSYTKA 226 (287)
Q Consensus 170 a~ggG~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~-----------~RPll-------~~~~~~~~~~~ 226 (287)
..| .+.+....+.|. -.++|||++|.+.+.+|+..|... ..|.. .....|..+..
T Consensus 81 LDG--fPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~I 158 (505)
T PLN02842 81 LDG--YPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEKV 158 (505)
T ss_pred EeC--CCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHHH
Confidence 222 111111122232 257999999999999998765311 01110 11112232222
Q ss_pred HHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 227 FTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 227 ~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
..+|..-.+.-.|+...+...+ -.||.+. ++++|.++|...+.+.+.+
T Consensus 159 kkRL~~Y~~~t~pIl~~Y~~rl---------~~IDAsq-s~EeVfeeI~~iL~~~L~~ 206 (505)
T PLN02842 159 KARLQIYKKNAEAILSTYSDIM---------VKIDGNR-PKEVVFEEISSLLSQIQKD 206 (505)
T ss_pred HHHHHHHHHHhhhHHHhcCcEE---------EEEECCC-CHHHHHHHHHHHHHHHHhh
Confidence 2333222222223333221111 1267664 8999999999999988764
No 422
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.84 E-value=4.7e-09 Score=100.21 Aligned_cols=82 Identities=20% Similarity=0.300 Sum_probs=66.7
Q ss_pred cEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhh
Q 023118 65 DVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFK 143 (287)
Q Consensus 65 ~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~ 143 (287)
-+|++|+.+.|.+. --+.++|+++++ |+.++|+|.|||||||++++|.|+..| ++|.+. ++|.++..-
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikr---GelvFliG~NGsGKST~~~LLtGL~~P---qsG~I~---ldg~pV~~e-- 390 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKR---GELVFLIGGNGSGKSTLAMLLTGLYQP---QSGEIL---LDGKPVSAE-- 390 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEec---CcEEEEECCCCCcHHHHHHHHhcccCC---CCCcee---ECCccCCCC--
Confidence 48999999999755 568999999999 999999999999999999999999999 688776 688877543
Q ss_pred hhchhhhhhhHHHHHH
Q 023118 144 ESGEAYFREYESKALQ 159 (287)
Q Consensus 144 ~~g~~~fr~~e~~~l~ 159 (287)
..+.||..-..+..
T Consensus 391 --~ledYR~LfSavFs 404 (546)
T COG4615 391 --QLEDYRKLFSAVFS 404 (546)
T ss_pred --CHHHHHHHHHHHhh
Confidence 44555555444433
No 423
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.83 E-value=1.7e-09 Score=96.82 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=38.7
Q ss_pred ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
|+++||++.+ |++++|+|+||||||||+++|+|.+.| ++|.+.
T Consensus 1 l~~is~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~ 43 (230)
T TIGR01184 1 LKGVNLTIQQ---GEFISLIGHSGCGKSTLLNLISGLAQP---TSGGVI 43 (230)
T ss_pred CCceeEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE
Confidence 5789999999 999999999999999999999999987 566553
No 424
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.83 E-value=3e-09 Score=105.58 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=57.8
Q ss_pred ccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc-cccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT-FADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~-fid~d~~ie~~~~G~~i 138 (287)
++|+++||+..|.. ..+++|+||++.+ |+.++|+|.|||||||+++.|.|.+.+. -+.+|.++ ++|.++
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~---GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~---~~g~dl 77 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEP---GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI---LDGRDL 77 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecC---CcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE---ECCcch
Confidence 37999999999852 3699999999999 9999999999999999999999999886 34466664 455543
No 425
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.83 E-value=2e-09 Score=96.20 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=36.3
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++||++++ |++++|+||||||||||+++|+|.+.|
T Consensus 1 ~l~~vs~~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 1 LVQDLNLSLKR---GEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57899999999 999999999999999999999999886
No 426
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.82 E-value=1.6e-09 Score=93.88 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=55.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
..++++|+.|+||...+|+++|++... |+.|.|||.|||||||+++.|.-+..| +.|.+.
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~---GdVisIIGsSGSGKSTfLRCiN~LE~P---~~G~I~ 64 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANA---GDVISIIGSSGSGKSTFLRCINFLEKP---SAGSIR 64 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCC---CCEEEEecCCCCchhHHHHHHHhhcCC---CCceEE
Confidence 358999999999999999999999999 999999999999999999999888888 677664
No 427
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.81 E-value=1.9e-09 Score=94.46 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=55.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.++++++++.+||+-.+++++||++.+ |+.=+||||||+||||++-.|.|...| +.|.++
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~---Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~ 63 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDP---GELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVL 63 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecC---CeEEEEECCCCCCceeeeeeecccCCC---CcceEE
Confidence 469999999999999999999999999 999999999999999999999999999 455544
No 428
>PRK13973 thymidylate kinase; Provisional
Probab=98.81 E-value=1.7e-07 Score=83.12 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=87.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhcc---CCccccc--------hhHHHHHhCCCchhhhhhhhchhhhhhh-----HHH
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDAL---DYTFADS--------DKYVEKLMGGTSVAQIFKESGEAYFREY-----ESK 156 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l---~~~fid~--------d~~ie~~~~G~~i~~~~~~~g~~~fr~~-----e~~ 156 (287)
+|..|+|-|+.||||||+++.|+..| |..++.+ +..+.+...+.....+-.....-.|... +..
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~ 81 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEV 81 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999 6665544 5555554422110000000000111111 111
Q ss_pred HHHHhhcCCCeEEecCC--------ceEe-ccccH-Hhh--------cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCC
Q 023118 157 ALQKLSLVPQQVVATGG--------GAVV-RPLNW-RFM--------RQGITVFLNVPLDALARRIAAVGTDSFPLLDYD 218 (287)
Q Consensus 157 ~l~~l~~~~~~via~gg--------G~v~-~~~~~-~~L--------~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~ 218 (287)
+...+.. ...|++..- |... -+..| ..+ .-..+|||++|+++..+|+..|+....
T Consensus 82 i~~~l~~-g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~~~~~------ 154 (213)
T PRK13973 82 IRPALAR-GKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLERAAKRRGSDT------ 154 (213)
T ss_pred HHHHHHC-CCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhccCCCc------
Confidence 2222322 223333210 1100 01111 111 126799999999999999987642110
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 219 SADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.+.+++ .-.+.+.++...|.+ ++.- .....+||.+ .++++|..+|...+.+++.
T Consensus 155 -~~~~e~---~~~~~~~~~~~~y~~l~~~~------~~~~~~Ida~-~~~e~V~~~I~~~i~~~~~ 209 (213)
T PRK13973 155 -PDRFEK---EDLAFHEKRREAFLQIAAQE------PERCVVIDAT-ASPEAVAAEIWAAVDQRLL 209 (213)
T ss_pred -cCchhh---chHHHHHHHHHHHHHHHHhC------CCcEEEEcCC-CCHHHHHHHHHHHHHHHHh
Confidence 011110 001122233344443 2100 0001136876 4999999999999987654
No 429
>PRK13409 putative ATPase RIL; Provisional
Probab=98.80 E-value=4.9e-09 Score=106.29 Aligned_cols=52 Identities=25% Similarity=0.189 Sum_probs=46.9
Q ss_pred ceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 70 TFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 70 ~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++||. ..+|++++ .+.+ |++++|+||||||||||+++|+|.+.| +.|.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~---Gev~gLvG~NGaGKSTLlkiL~G~l~p---~~G~i 130 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKE---GKVTGILGPNGIGKTTAVKILSGELIP---NLGDY 130 (590)
T ss_pred CceEEecCCceeEecCC-cCCC---CCEEEEECCCCCCHHHHHHHHhCCccC---CCccc
Confidence 48999986 46999999 8999 999999999999999999999999998 56665
No 430
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.79 E-value=9.1e-08 Score=83.11 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+|..|+|.|++||||||+++.|+..+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999999865
No 431
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.78 E-value=3.1e-09 Score=105.42 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=48.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|+++ .+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~---Ge~~~liG~NGsGKSTLl~~l~G~~~p---~~G~I~ 310 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRK---GEILGVSGLMGAGRTELMKVLYGALPR---TSGYVT 310 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcC---CcEEEEecCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 4689999985 379999999999 999999999999999999999999987 566653
No 432
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.78 E-value=3.1e-09 Score=105.47 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=48.2
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.+++++++.. .+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 257 ~l~~~~~~~~----~~l~~isl~i~~---Ge~~~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~ 311 (501)
T PRK11288 257 RLRLDGLKGP----GLREPISFSVRA---GEIVGLFGLVGAGRSELMKLLYGATRR---TAGQVY 311 (501)
T ss_pred EEEEeccccC----CcccceeEEEeC---CcEEEEEcCCCCCHHHHHHHHcCCCcC---CCceEE
Confidence 5888998732 489999999999 999999999999999999999999977 556554
No 433
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.77 E-value=4.9e-09 Score=117.88 Aligned_cols=59 Identities=22% Similarity=0.202 Sum_probs=53.3
Q ss_pred ccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..++++|+++.|+ ++.+++++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~---Gei~aLLG~NGAGKSTLLkiLaGLl~P---tsG~I 987 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYE---NQITAFLGHNGAGKTTTLSILTGLLPP---TSGTV 987 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcC---CcEEEEECCCCChHHHHHHHHhcCCCC---CceEE
Confidence 3699999999995 57899999999999 999999999999999999999999988 45544
No 434
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.76 E-value=6.5e-09 Score=115.08 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=55.8
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
.++++||+++|+. ..+|+|+||+|++ |+.|+|+|++|||||||+++|.+.+. .+|.+. .+|.++.+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~---GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~---IdG~di~~ 1284 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEG---GQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQ---IDGVSWNS 1284 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEE---ECCEEccc
Confidence 5999999999963 6799999999999 99999999999999999999999974 345543 36666554
No 435
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.75 E-value=1.8e-07 Score=82.63 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.+..|+|+||+|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3889999999999999999999754
No 436
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.75 E-value=9.1e-09 Score=88.55 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=53.5
Q ss_pred cEEEcceEEEcC-----C--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118 65 DVESGTFCDSLD-----G--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL 132 (287)
Q Consensus 65 ~l~~~~l~~~~~-----~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~ 132 (287)
.+.++|++|+|- + -+++.++||+++. |+|++|-||||+||||++|.|.+-+.+ |+|.+..+.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~a---GECvvL~G~SG~GKStllr~LYaNY~~---d~G~I~v~H 72 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNA---GECVVLHGPSGSGKSTLLRSLYANYLP---DEGQILVRH 72 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecC---ccEEEeeCCCCCcHHHHHHHHHhccCC---CCceEEEEe
Confidence 478899988882 2 3689999999999 999999999999999999999998888 888875333
No 437
>PRK13974 thymidylate kinase; Provisional
Probab=98.75 E-value=7.3e-07 Score=79.00 Aligned_cols=27 Identities=41% Similarity=0.511 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.|.+|+|.|+.||||||+++.|++.+.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999998874
No 438
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.75 E-value=6e-09 Score=94.31 Aligned_cols=46 Identities=30% Similarity=0.333 Sum_probs=41.2
Q ss_pred EEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 67 ESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 67 ~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+++||++. .+|+++||++.+ |++++|+|+||||||||+++|+|.+.
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~---Gei~~l~G~nGsGKSTLl~~l~Gl~~ 47 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRA---GEILHLVGPNGAGKSTLLARMAGLLP 47 (248)
T ss_pred cccccchh----ceecceEEEEcC---CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46777765 289999999999 99999999999999999999999873
No 439
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.74 E-value=9.9e-09 Score=100.45 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=49.7
Q ss_pred CccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 63 AHDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 63 ~~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
...+.++++++.-. ++++++++||++.+ |+.++||||||||||||+|+|.|...|.
T Consensus 332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~---G~~lgIIGPSgSGKSTLaR~lvG~w~p~ 389 (580)
T COG4618 332 QGALSVERLTAAPPGQKKPILKGISFALQA---GEALGIIGPSGSGKSTLARLLVGIWPPT 389 (580)
T ss_pred CceeeEeeeeecCCCCCCcceecceeEecC---CceEEEECCCCccHHHHHHHHHcccccC
Confidence 34799999987553 46799999999999 9999999999999999999999999883
No 440
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.74 E-value=4.7e-09 Score=104.49 Aligned_cols=54 Identities=20% Similarity=0.246 Sum_probs=47.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++ .+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 267 ~~l~~~~l~~-----~~l~~isl~i~~---Ge~~~l~G~NGsGKSTLl~~i~Gl~~p---~~G~i 320 (510)
T PRK15439 267 PVLTVEDLTG-----EGFRNISLEVRA---GEILGLAGVVGAGRTELAETLYGLRPA---RGGRI 320 (510)
T ss_pred ceEEEeCCCC-----CCccceeEEEcC---CcEEEEECCCCCCHHHHHHHHcCCCCC---CCcEE
Confidence 4799999984 269999999999 999999999999999999999999887 45555
No 441
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.73 E-value=4.2e-09 Score=93.51 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=57.3
Q ss_pred cEEEcceEEEcC-----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLD-----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~-----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
|+++.|+.+.|. ++++|.++|+++.. |+++.|+|.||+||||+++.|||.+.+ |+|.+. .+|.+++
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~---g~FvtViGsNGAGKSTlln~iaG~l~~---t~G~I~---Idg~dVt 71 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAE---GDFVTVIGSNGAGKSTLLNAIAGDLKP---TSGQIL---IDGVDVT 71 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecC---CceEEEEcCCCccHHHHHHHhhCcccc---CCceEE---ECceecc
Confidence 356677777664 46799999999999 999999999999999999999999999 788775 4677776
Q ss_pred hh
Q 023118 140 QI 141 (287)
Q Consensus 140 ~~ 141 (287)
..
T Consensus 72 k~ 73 (263)
T COG1101 72 KK 73 (263)
T ss_pred cC
Confidence 54
No 442
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.72 E-value=9.3e-09 Score=113.17 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=51.7
Q ss_pred cEEEcceEEEcC----CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD----GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~----~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++||++.|+ ++.+|+|+|+.+++ |+.++|+||||||||||+++|+|.+.+...++|.+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I 823 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKP---GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR 823 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence 578999999984 46799999999999 99999999999999999999999986322244443
No 443
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.72 E-value=3.6e-07 Score=80.50 Aligned_cols=167 Identities=11% Similarity=0.101 Sum_probs=87.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh--hh-------hhhch----hh---hhhhHH--
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ--IF-------KESGE----AY---FREYES-- 155 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~--~~-------~~~g~----~~---fr~~e~-- 155 (287)
+..|+|.|++|+||||+++.|+..+++.++-+++++.+...+..-.+ +. +..+. .. |...-.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v 82 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAI 82 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence 67899999999999999999999999988666666555432211111 00 00111 00 111101
Q ss_pred -----HHHHHhhcCCCeEEecCCceEeccccHHhhc--CCcEEEEec-CHHHHHHHHhhcCCCCCCCcCCCCcchhhHHH
Q 023118 156 -----KALQKLSLVPQQVVATGGGAVVRPLNWRFMR--QGITVFLNV-PLDALARRIAAVGTDSFPLLDYDSADSYTKAF 227 (287)
Q Consensus 156 -----~~l~~l~~~~~~via~ggG~v~~~~~~~~L~--~g~~I~L~~-~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~ 227 (287)
.+++.+......++..|- -..+..+.... ....+||.+ +++.+.+|+..|+.. .-....+..|.+.+
T Consensus 83 ~~~L~~va~~~l~~G~sVIvEgv--~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~---~~~~~p~~~~~~~~ 157 (197)
T PRK12339 83 MPGINRVIRRALLNGEDLVIESL--YFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINY---THKNSPGKRLAEHL 157 (197)
T ss_pred HHHHHHHHHHHHHcCCCEEEEec--CcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhc---ccCCCcHHHHHHHH
Confidence 112222222333444431 12222222221 234567765 688888999876521 11112234566666
Q ss_pred HHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 228 TALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 228 ~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
.++..+.+.=...=++.++.+ ||+. +.++.++.+++.+
T Consensus 158 ~~ir~i~~~l~~~a~~~~i~~-----------i~~~--~~~~~~~~~~~~~ 195 (197)
T PRK12339 158 PEYRTIMDYSIADARGYNIKV-----------IDTD--NYREARNPLLDPI 195 (197)
T ss_pred HHHHHHHHHHHHHHHHcCCCe-----------ecCc--cHHHHHHHHHHHh
Confidence 666665443333333345554 4444 5677777777654
No 444
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.72 E-value=1.1e-08 Score=88.45 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=33.7
Q ss_pred CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118 77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La 115 (287)
...+|+++||++.+ |+.++|+||||||||||++++.
T Consensus 7 ~~~~l~~isl~i~~---G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 7 NVHNLQNLDVSIPL---NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred eeeeecceEEEEcC---CCEEEEECCCCCCHHHHHHHHh
Confidence 35689999999999 9999999999999999999985
No 445
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.69 E-value=2.4e-07 Score=79.82 Aligned_cols=37 Identities=35% Similarity=0.564 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
.|+|+|++||||||+++.|+. +|++++|+|.+..+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 37 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVY 37 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhh
Confidence 489999999999999999999 8999999999977664
No 446
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.69 E-value=7.5e-07 Score=78.84 Aligned_cols=83 Identities=20% Similarity=0.180 Sum_probs=50.3
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCC
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDIT 266 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t 266 (287)
.+.|||+++.+.+.+||..|+ ||...... +++...++.+...|...-..|.. .++.|+.. ..+-..
T Consensus 128 dllIyLd~~~e~~l~RI~~Rg---R~~E~~~~-~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~---------~~D~~~ 194 (216)
T COG1428 128 DLLIYLDASLETLLRRIAKRG---RPFEIDNF-DENKDYLKDLHRRYDDWFENYDACPVLGIDGD---------SIDFVN 194 (216)
T ss_pred CEEEEEeCCHHHHHHHHHHhC---CCcccccc-cchHHHHHHHHHHHHHHHHhcccCCeeeeccc---------eecccC
Confidence 578999999999999999876 77775433 23223355555555555555543 34555322 222234
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023118 267 PTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 267 ~~eva~~i~~~i~~~l~ 283 (287)
.++-.+.++..|...++
T Consensus 195 ~~~d~~~v~~~I~~~~~ 211 (216)
T COG1428 195 NEQDLEKVLDQILAKLK 211 (216)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 45666666666665554
No 447
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.68 E-value=2.4e-08 Score=79.67 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+|+|+|++||||||+++.|+..++..+++.|.++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999953
No 448
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.66 E-value=6.4e-07 Score=79.74 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=45.2
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHH-Hhhhhh-CCeEEeccccccccccccCC-C
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKER-SEAYAN-ADATVSLLNLAACIGLKDVL-D 264 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R-~~~Y~~-ad~~v~~~~~a~~~~~idt~-~ 264 (287)
.++|||++|++.+.+|+..|+ ++.... -...| ++.+.+.|+++ .+.|.. +++.+ +|.+ .
T Consensus 144 d~~i~l~~~~~~~~~Ri~~R~---~~~e~~-~~~~y---l~~l~~~y~~~~~~~~~~~~~~i~-----------id~~~~ 205 (219)
T cd02030 144 HLVIYLDVPVPEVQKRIKKRG---DPHEMK-VTSAY---LQDIENAYKKTFLPEISEHSEVLQ-----------YDWTEA 205 (219)
T ss_pred CEEEEEeCCHHHHHHHHHHcC---Cchhhc-ccHHH---HHHHHHHHHHHHHHhhccCCCEEE-----------EeCCCh
Confidence 678999999999999998765 332221 12223 46788888777 455764 56655 5643 1
Q ss_pred CCHHHHHHHHH
Q 023118 265 ITPTTIAMEVL 275 (287)
Q Consensus 265 ~t~~eva~~i~ 275 (287)
.+.++|+.+|.
T Consensus 206 ~~~e~i~~~I~ 216 (219)
T cd02030 206 GDTEKVVEDIE 216 (219)
T ss_pred hhHHHHHHHHH
Confidence 35666666554
No 449
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.66 E-value=1e-06 Score=76.25 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+|..|+|.|++||||||+++.|+..++.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3889999999999999999999988743
No 450
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.66 E-value=3.3e-08 Score=107.07 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=62.5
Q ss_pred CCCCCC-ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC
Q 023118 58 SKDSNA-HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG 134 (287)
Q Consensus 58 ~~~~~~-~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~ 134 (287)
.+.||. ..++++|++.+|.. ..+|+++||+|+| |+.|+|||..|||||||+..|-++..+ ..|.+. .+
T Consensus 1130 p~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p---~eKVGIVGRTGaGKSSL~~aLFRl~e~---~~G~I~---ID 1200 (1381)
T KOG0054|consen 1130 PPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKP---GEKVGIVGRTGAGKSSLILALFRLVEP---AEGEIL---ID 1200 (1381)
T ss_pred CCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcC---CceEEEeCCCCCCHHHHHHHHHHhcCc---cCCeEE---Ec
Confidence 556775 37999999999964 4799999999999 999999999999999999999999988 455553 36
Q ss_pred CCchhhh
Q 023118 135 GTSVAQI 141 (287)
Q Consensus 135 G~~i~~~ 141 (287)
|.+|.++
T Consensus 1201 gvdI~~i 1207 (1381)
T KOG0054|consen 1201 GVDISKI 1207 (1381)
T ss_pred Ceecccc
Confidence 6666654
No 451
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.65 E-value=4.9e-07 Score=78.45 Aligned_cols=38 Identities=21% Similarity=0.433 Sum_probs=34.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
+|.|+|||||||||+++.|+..++.+.+|+|.++....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~ 39 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI 39 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence 68999999999999999999999999999999975544
No 452
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.64 E-value=1.8e-07 Score=82.29 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC---ccccchhH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY---TFADSDKY 128 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~---~fid~d~~ 128 (287)
|..|+|+|++|||||||++.|++.++. .++..|.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 899999999999999999999998863 34555554
No 453
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.63 E-value=2.1e-08 Score=91.02 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=36.4
Q ss_pred eeccccceeeccC--CCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 79 WLLKAKGREVASC--LDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 79 ~il~~~s~~i~~~--l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..++++++++.+. -.|++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p---~~G~i 56 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP---DEGDI 56 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCCeE
Confidence 3556666666520 02999999999999999999999999987 56654
No 454
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.63 E-value=4.7e-07 Score=80.06 Aligned_cols=38 Identities=34% Similarity=0.549 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL 132 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~ 132 (287)
...|+|+|..||||||++++++. +|++.+|+|.++.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~ 39 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREV 39 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHH
Confidence 35799999999999999999999 999999999997644
No 455
>PRK07261 topology modulation protein; Provisional
Probab=98.62 E-value=7.2e-08 Score=82.76 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~ 175 (287)
.|+|+|++|||||||++.|+..+++++++.|.+. + ..... ....+.+.. .+.++..... .|..|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~---~-~~~~~----~~~~~~~~~----~~~~~~~~~~-wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH---F-QPNWQ----ERDDDDMIA----DISNFLLKHD-WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE---e-ccccc----cCCHHHHHH----HHHHHHhCCC-EEEcCcch
Confidence 6899999999999999999999999999998775 2 11110 111111111 1222333233 44444311
Q ss_pred EeccccHHhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118 176 VVRPLNWRFMR-QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 176 v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
.......+. ...+|||+.|.+.+..|+..|
T Consensus 69 --~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 69 --WCLYEERMQEADQIIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred --hhhHHHHHHHCCEEEEEcCCHHHHHHHHHHH
Confidence 101012222 378999999999999998765
No 456
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.61 E-value=1.8e-06 Score=78.49 Aligned_cols=38 Identities=32% Similarity=0.414 Sum_probs=34.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
.|+|.|..||||||++++|...+|.+.||+|.+..+.+
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~ 40 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQ 40 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence 69999999999999999999888999999999966654
No 457
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.60 E-value=1.8e-08 Score=92.16 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=40.7
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++|+||+|++ |++++++|+||+||||++|+|.|.+.| ++|.+
T Consensus 38 ~AVqdisf~IP~---G~ivgflGaNGAGKSTtLKmLTGll~p---~~G~v 81 (325)
T COG4586 38 EAVQDISFEIPK---GEIVGFLGANGAGKSTTLKMLTGLLLP---TSGKV 81 (325)
T ss_pred hhhheeeeecCC---CcEEEEEcCCCCcchhhHHHHhCcccc---CCCeE
Confidence 489999999999 999999999999999999999999999 56654
No 458
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.60 E-value=3.6e-08 Score=78.64 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=33.1
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La 115 (287)
..+|++++|++.+ |+.++|+||||||||||++++.
T Consensus 2 ~~aL~~vsl~i~~---ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYG---KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcC---CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999 9999999999999999999987
No 459
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.60 E-value=3e-08 Score=97.71 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=54.2
Q ss_pred CCCCccEEEcceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 60 DSNAHDVESGTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 60 ~~~~~~l~~~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
..|.+++-++|++|.|.+. .++++++|.+.. +..+++|||||||||||+|++.+.+.|.
T Consensus 384 ~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~---~srvAlVGPNG~GKsTLlKl~~gdl~p~ 443 (614)
T KOG0927|consen 384 KIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDL---DSRVALVGPNGAGKSTLLKLITGDLQPT 443 (614)
T ss_pred CCCCCeEEEeccccCCCCcchhhhhhhcccCc---ccceeEecCCCCchhhhHHHHhhccccc
Confidence 3667789999999999755 799999999999 9999999999999999999999999994
No 460
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.2e-07 Score=81.81 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=83.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhh-hchhhhhhhHHHHHHHhhcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKE-SGEAYFREYESKALQKLSLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~-~g~~~fr~~e~~~l~~l~~~~~~ 167 (287)
|..|=+.|.|||||||++..|...| ....+|+|.+-.-...+.. |.. +-.+..|+ -.++.+ +....+.
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg----Fs~edR~eniRR-vaevAk-ll~daG~ 96 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG----FSREDRIENIRR-VAEVAK-LLADAGL 96 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC----CChHHHHHHHHH-HHHHHH-HHHHCCe
Confidence 6688899999999999999999877 2334788877522211111 111 11222221 122333 3333444
Q ss_pred EEecCCceEecc---ccHHhhcCC--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118 168 VVATGGGAVVRP---LNWRFMRQG--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA 242 (287)
Q Consensus 168 via~ggG~v~~~---~~~~~L~~g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~ 242 (287)
++.+.--.+.+. .+++.+.+| +-||+++|++.+.+|= .. .-|.+++.---.-+--=+.-|+
T Consensus 97 iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD------pK--------GLYkKAr~GeI~~fTGid~pYE 162 (197)
T COG0529 97 IVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD------PK--------GLYKKARAGEIKNFTGIDSPYE 162 (197)
T ss_pred EEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC------ch--------HHHHHHHcCCCCCCcCCCCCCC
Confidence 444432122211 123334443 4599999999999991 11 1222221100000000113455
Q ss_pred h---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 243 N---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 243 ~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
. .+++ +||+..++++.+++|++.+...
T Consensus 163 ~P~~Pel~------------l~t~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 163 APENPELH------------LDTDRNSVEECVEQILDLLKER 192 (197)
T ss_pred CCCCCeeE------------eccccCCHHHHHHHHHHHHHhc
Confidence 4 3444 5899999999999999998653
No 461
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.60 E-value=7.1e-08 Score=89.98 Aligned_cols=91 Identities=18% Similarity=0.343 Sum_probs=64.5
Q ss_pred cEEEcceEEEcCC------------------------eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDG------------------------KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~------------------------~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.++++|+++-||. ..-++|+||+++. |++.+|+|.||||||||.++|.++..|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~---GeIfViMGLSGSGKSTLvR~~NrLiep 80 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEE---GEIFVIMGLSGSGKSTLVRLLNRLIEP 80 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecC---CeEEEEEecCCCCHHHHHHHHhccCCC
Confidence 4788888888863 1347899999999 999999999999999999999999999
Q ss_pred ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHH-HHHHHhhcCC
Q 023118 121 TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYES-KALQKLSLVP 165 (287)
Q Consensus 121 ~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~-~~l~~l~~~~ 165 (287)
+.|.+. ++|.++..+ .......||.... -+.++++..+
T Consensus 81 ---t~G~il---v~g~di~~~-~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 81 ---TRGEIL---VDGKDIAKL-SAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred ---CCceEE---ECCcchhcC-CHHHHHHHHhhhhhhhhhhhcccc
Confidence 577665 467776655 2222233333322 2445555443
No 462
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.59 E-value=1.7e-06 Score=79.99 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=48.5
Q ss_pred cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH---hhhhhCCeEEeccccccccccccCCCC
Q 023118 189 ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS---EAYANADATVSLLNLAACIGLKDVLDI 265 (287)
Q Consensus 189 ~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~ 265 (287)
.+|||+++.+++.+|-.... +.-|+..... . +..+-.+|+ |+-+.||.+| ||+++
T Consensus 84 ~ilFLdA~d~~LirRy~eTR-R~HPL~~~~~--~-------le~I~~Er~~L~~lr~~Ad~vI------------DTs~l 141 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETR-RRHPLSSDGS--L-------LEAIEKERELLEPLRERADLVI------------DTSNL 141 (284)
T ss_pred EEEEEECChHHHHHHHHhcc-CCCCCCCCCC--c-------HHHHHHHHHHHHHHHHhCCEEE------------ECCCC
Confidence 47999999999999987532 2346654321 1 223334454 6666688875 99999
Q ss_pred CHHHHHHHHHHHHH
Q 023118 266 TPTTIAMEVLVQAQ 279 (287)
Q Consensus 266 t~~eva~~i~~~i~ 279 (287)
++.+.-+.|.+.+.
T Consensus 142 ~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 142 SVHQLRERIRERFG 155 (284)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999988765
No 463
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.58 E-value=3.2e-07 Score=82.10 Aligned_cols=42 Identities=26% Similarity=0.518 Sum_probs=33.2
Q ss_pred CeEEecCCceEeccccHHhhcC--CcEEEEecCHHHHHHHHhhc
Q 023118 166 QQVVATGGGAVVRPLNWRFMRQ--GITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 166 ~~via~ggG~v~~~~~~~~L~~--g~~I~L~~~~e~l~~Ri~~~ 207 (287)
..++..|.+.......|..+.. ..+|||++|.+.+.+|+..|
T Consensus 138 ~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R 181 (229)
T PRK09270 138 RLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVAR 181 (229)
T ss_pred CEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHH
Confidence 4567778877776667766654 68999999999999999875
No 464
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.58 E-value=5.7e-07 Score=75.67 Aligned_cols=139 Identities=20% Similarity=0.294 Sum_probs=82.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhc---CCCeEEe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSL---VPQQVVA 170 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~---~~~~via 170 (287)
+..|.|.|.+|+||||++..||..+++.||+.++++.+.- +-+-+.+ +.+-.--.|..++..|.. ..+.||.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~----l~~gyDE-~y~c~i~DEdkv~D~Le~~m~~Gg~IVD 81 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN----LYEGYDE-EYKCHILDEDKVLDELEPLMIEGGNIVD 81 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc----chhcccc-cccCccccHHHHHHHHHHHHhcCCcEEe
Confidence 4579999999999999999999999999999999984431 1111110 001111134445555532 2233333
Q ss_pred cCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEec
Q 023118 171 TGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSL 250 (287)
Q Consensus 171 ~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~ 250 (287)
.-|-- +.|+-| =..+|.|.+|-+.+..|+..|+.+...+..+- + -+.+.-++++=.+.|.. ++++.+
T Consensus 82 yHgCd-~Fperw----fdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNi--e-----cEIfgv~~eea~eSy~~-~iV~eL 148 (176)
T KOG3347|consen 82 YHGCD-FFPERW----FDLVVVLRTPNSVLYDRLKSRGYSEKKIKENI--E-----CEIFGVVLEEARESYSP-KIVVEL 148 (176)
T ss_pred ecccC-ccchhh----eeEEEEEecCchHHHHHHHHcCCCHHHHhhhc--c-----hHHHHHHHHHHHHHcCC-cceeec
Confidence 32211 112222 15789999999999999998875433332221 1 13455556666677754 455543
No 465
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.58 E-value=4.6e-08 Score=83.68 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=52.2
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
|.++++++.||..++|-|++|+.+. |+.++|.||||+|||||++.|.-+.-| ++|.+
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~---getlvllgpsgagkssllr~lnlle~p---~sg~l 59 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPE---GETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTL 59 (242)
T ss_pred eEEcccccccccchheeeeeecCCC---CCEEEEECCCCCchHHHHHHHHHHhCC---CCCeE
Confidence 7899999999999999999999999 999999999999999999999766666 67766
No 466
>PLN03232 ABC transporter C family member; Provisional
Probab=98.57 E-value=6e-08 Score=107.61 Aligned_cols=54 Identities=24% Similarity=0.214 Sum_probs=50.3
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.++++|+++.|+. +.+|+|+||++++ |+.++|+||+|||||||+++|.|.+.+.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~---Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPV---GSLVAIVGGTGEGKTSLISAMLGELSHA 670 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCccc
Confidence 5899999999963 5799999999999 9999999999999999999999999883
No 467
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.57 E-value=5e-08 Score=108.36 Aligned_cols=53 Identities=17% Similarity=0.189 Sum_probs=49.9
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.++++|+++.|++ ..+|+|+||++++ |+.++|+||+|||||||+++|+|.+.+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~---G~~v~IvG~~GsGKSTLl~~l~g~~~~ 690 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPE---GALVAVVGQVGCGKSSLLSALLAEMDK 690 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 5999999999974 5799999999999 999999999999999999999999887
No 468
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.57 E-value=1.1e-06 Score=74.92 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|+.|+|+||+||||||+++.|++.++.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 678999999999999999999997643
No 469
>PLN03130 ABC transporter C family member; Provisional
Probab=98.54 E-value=6.7e-08 Score=107.81 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=50.2
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.++++|+++.|+. ..+|+|+||++++ |+.++|+||+|||||||+++|.|.+.+.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~---Ge~vaIvG~sGSGKSTLl~lLlG~~~~~ 670 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPV---GSLVAIVGSTGEGKTSLISAMLGELPPR 670 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecC---CCEEEEECCCCCCHHHHHHHHHHhhccC
Confidence 5899999999963 5699999999999 9999999999999999999999999883
No 470
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=3.2e-06 Score=73.34 Aligned_cols=168 Identities=15% Similarity=0.205 Sum_probs=96.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCC------CchhhhhhhhchhhhhhhHHHHHHH-hhc-CC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGG------TSVAQIFKESGEAYFREYESKALQK-LSL-VP 165 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G------~~i~~~~~~~g~~~fr~~e~~~l~~-l~~-~~ 165 (287)
-.+|+++|.+||||-|...-|++.+++..+++|+++....+. .-|.++.+ .|.-.=-+.-..++++ +.. ..
T Consensus 8 ~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~~ 86 (195)
T KOG3079|consen 8 PPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSGD 86 (195)
T ss_pred CCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999999999999998776521 11222211 1111100111112221 111 11
Q ss_pred -CeEEecCCceEeccccHHhh----c--CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH
Q 023118 166 -QQVVATGGGAVVRPLNWRFM----R--QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS 238 (287)
Q Consensus 166 -~~via~ggG~v~~~~~~~~L----~--~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~ 238 (287)
...+..| .+-+.+++..+ . ..+++|++++.|+..+|+..|+...+ -..++.++. ..++..-+....
T Consensus 87 ~~~fLIDG--yPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~--R~DDn~esi---kkR~et~~~~t~ 159 (195)
T KOG3079|consen 87 SNGFLIDG--YPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNS--RSDDNEESI---KKRLETYNKSTL 159 (195)
T ss_pred CCeEEecC--CCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCC--CCCCchHHH---HHHHHHHHHcch
Confidence 1122222 22223333332 2 15899999999999999998865433 112222222 234444444444
Q ss_pred h---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 239 E---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 239 ~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
| .|++-+-.. -||.+ -+|++|..++...++.
T Consensus 160 Pvi~~~e~kg~l~----------~i~a~-~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 160 PVIEYYEKKGKLL----------KINAE-RSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHHHccCcEE----------EecCC-CCHHHHHHHHHHHhhc
Confidence 4 555433222 25665 4999999999888765
No 471
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.7e-06 Score=73.72 Aligned_cols=158 Identities=22% Similarity=0.256 Sum_probs=85.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCc--cccchhHHHHH--hC---CCch--hhhhhhhchhhhh----------hhH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYT--FADSDKYVEKL--MG---GTSV--AQIFKESGEAYFR----------EYE 154 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~--fid~d~~ie~~--~~---G~~i--~~~~~~~g~~~fr----------~~e 154 (287)
|..|+||||||+||-||+......+.-. |.=.-.+|-.- .+ ..++ .+++...++..|- ..-
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygip 84 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGIP 84 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccCc
Confidence 8999999999999999999887766432 11001111000 00 1111 1121111111111 111
Q ss_pred HHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118 155 SKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS 234 (287)
Q Consensus 155 ~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~ 234 (287)
.++-.++.. ...|++.|.-.++ |..+....+=.+|.|.++++++++|+..|+..++ +++.+.+
T Consensus 85 ~eId~wl~~-G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGREs~---------------eeI~aRL 147 (192)
T COG3709 85 AEIDLWLAA-GDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRESR---------------EEILARL 147 (192)
T ss_pred hhHHHHHhC-CCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccCCH---------------HHHHHHH
Confidence 122223332 2345555543332 3333333345789999999999999998873221 3344433
Q ss_pred HHHHhhhhh--CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 235 KERSEAYAN--ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 235 ~~R~~~Y~~--ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
.|...|.. .|... ||.++ .++...+..+..+.+.
T Consensus 148 -~R~a~~~~~~~dv~~-----------idNsG-~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 148 -ARAARYTAGPGDVTT-----------IDNSG-ELEDAGERLLALLHQD 183 (192)
T ss_pred -HhhcccccCCCCeEE-----------EcCCC-cHHHHHHHHHHHHHhh
Confidence 35555653 45544 78876 7888888888877643
No 472
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.2e-07 Score=91.19 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=58.0
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.+.+.++++.|+ .+++|+++||.+++ |+.++++|++|+||||++++|-..+.+ ++|.+. .+|.++.+.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~---g~tvAiVg~SG~gKsTI~rllfRFyD~---~sG~I~---id~qdir~v 330 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPL---GKTVAIVGESGAGKSTILRLLFRFYDV---NSGSIT---IDGQDIRDV 330 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccC---ccEEEEEeCCCCcHHHHHHHHHHHhCC---cCceEE---EcchhHHHh
Confidence 478899999996 67899999999999 999999999999999999999998888 566654 356666554
No 473
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.53 E-value=4.8e-07 Score=78.20 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=80.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhh--hh-----------------------hhchh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQI--FK-----------------------ESGEA 148 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~--~~-----------------------~~g~~ 148 (287)
+|.|.|..|||++|+++.||+.||++|+|. .++.+.. .|.+...+ +. ....+
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 589999999999999999999999999999 4443332 13222221 00 01122
Q ss_pred hhhhhHHHHHHHhhcCCCeEEecCCceEeccccHHhhcC---CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhH
Q 023118 149 YFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQ---GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTK 225 (287)
Q Consensus 149 ~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~---g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~ 225 (287)
.+.....+++.+++...++| -.|.|. ++ .|+. .+.|||.+|.+.+++|+..+.+ ....+
T Consensus 80 ~~~~~~~~~i~~la~~~~~V-i~GR~a-----~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~-----------~s~~~ 141 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCV-IVGRCA-----NY-ILRDIPNVLHVFIYAPLEFRVERIMEREG-----------ISEEE 141 (179)
T ss_dssp HHHHHHHHHHHHHHH---EE-EESTTH-----HH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT-------------HHH
T ss_pred HHHHHHHHHHHHHhccCCEE-EEecCH-----hh-hhCCCCCeEEEEEECCHHHHHHHHHHHcC-----------CCHHH
Confidence 23334445677777655443 344321 22 2332 4789999999999999986521 12234
Q ss_pred HHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCC
Q 023118 226 AFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVL 263 (287)
Q Consensus 226 ~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~ 263 (287)
+...+.+.=..|...|+. .+. +..+...++.+|||+
T Consensus 142 A~~~i~~~D~~R~~~~~~~~~~--~~~d~~~YDLvint~ 178 (179)
T PF13189_consen 142 AEKLIKKEDKRRRAYYKYYTGI--DWGDPSNYDLVINTS 178 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SS---TTBGGG-SEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CCCCchhceEEEeCc
Confidence 556666666677777766 444 235566666677775
No 474
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.52 E-value=3.2e-06 Score=73.68 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..|+|+||||||||||.+.|...+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999998765
No 475
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.50 E-value=7.1e-08 Score=94.72 Aligned_cols=52 Identities=21% Similarity=0.398 Sum_probs=42.1
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
++|+++|+++.+ |+.++|+||||||||||++ ++.+.++ +++.+. .+|.++..
T Consensus 20 ~vL~~Vsl~i~~---GEiv~L~G~SGsGKSTLLr--~~l~~~~--sGg~I~---ldg~~~~~ 71 (504)
T TIGR03238 20 RILVKFNKELPS---SSLLFLCGSSGDGKSEILA--ENKRKFS--EGYEFF---LDATHSFS 71 (504)
T ss_pred HHHhCCceeecC---CCEEEEECCCCCCHHHHHh--cCCCCCC--CCCEEE---ECCEECCC
Confidence 579999999999 9999999999999999999 6666664 444454 46766654
No 476
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.50 E-value=3.4e-07 Score=84.55 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCc---cccchhH
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYT---FADSDKY 128 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~---fid~d~~ 128 (287)
.|+|+|++||||||+++.|++.+++. .+..|.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 47999999999999999999988642 4555544
No 477
>PLN03140 ABC transporter G family member; Provisional
Probab=98.50 E-value=1.1e-07 Score=104.96 Aligned_cols=53 Identities=23% Similarity=0.231 Sum_probs=46.8
Q ss_pred cEEEcceEEEcC-------------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLD-------------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+.++||++.++ .+.+|+|+|+.+++ |+.++|+||||||||||+++|+|...+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Gel~aL~G~sGaGKTTLL~~LaG~~~~ 932 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP---GVLTALMGVSGAGKTTLMDVLAGRKTG 932 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEEC---CeEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 478899987763 34799999999999 999999999999999999999998753
No 478
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.49 E-value=7.8e-07 Score=74.22 Aligned_cols=102 Identities=19% Similarity=0.338 Sum_probs=58.7
Q ss_pred EEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCC-c----hhhhhhhhchhhhhhhHHHHHHH-hhc--CCCeEEe
Q 023118 99 LVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGT-S----VAQIFKESGEAYFREYESKALQK-LSL--VPQQVVA 170 (287)
Q Consensus 99 LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~-~----i~~~~~~~g~~~fr~~e~~~l~~-l~~--~~~~via 170 (287)
|+||+||||||+++.||..++..+|+.++++++..... . +.++. ..|...=-+.-.++++. +.. ....++-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l-~~g~~vp~~~v~~ll~~~l~~~~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYL-DNGELVPDELVIELLKERLEQPPCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHH-HTTSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHH-HhhccchHHHHHHHHHHHHhhhcccceeee
Confidence 78999999999999999999999999999987765221 1 22222 12222111111222222 221 1233333
Q ss_pred cCCceEeccccHH---hhc-----C----CcEEEEecCHHHHHHHHhh
Q 023118 171 TGGGAVVRPLNWR---FMR-----Q----GITVFLNVPLDALARRIAA 206 (287)
Q Consensus 171 ~ggG~v~~~~~~~---~L~-----~----g~~I~L~~~~e~l~~Ri~~ 206 (287)
.|- |.+.. .+. . ..+|+|++|.+.+.+|+..
T Consensus 80 dGf-----Prt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 80 DGF-----PRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp ESB------SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred eec-----cccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 331 33332 111 1 4689999999999999874
No 479
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.48 E-value=7.2e-08 Score=85.83 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=35.9
Q ss_pred eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
|++++ |++++|+|+||||||||+++|+|.+.+ ++|.+. ++|.++
T Consensus 1 l~i~~---Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~---~~g~~~ 44 (223)
T TIGR03771 1 LSADK---GELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVK---VAGASP 44 (223)
T ss_pred CccCC---CcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCccc
Confidence 46777 999999999999999999999999988 566554 345443
No 480
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.47 E-value=1.3e-06 Score=75.69 Aligned_cols=29 Identities=28% Similarity=0.579 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
.|+|-|+.||||||+++.|+..++..++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~ 29 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVVP 29 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcccc
Confidence 38999999999999999999877765543
No 481
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.47 E-value=3e-07 Score=78.11 Aligned_cols=103 Identities=23% Similarity=0.309 Sum_probs=57.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccchhHHHHHhCCCchhhhhhhhc-hhhhhhhHHHHHHHhhcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSDKYVEKLMGGTSVAQIFKESG-EAYFREYESKALQKLSLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d~~ie~~~~G~~i~~~~~~~g-~~~fr~~e~~~l~~l~~~~~~ 167 (287)
|-.|-|+|.+|||||||++.|...| ...++|+|.+-. +.+-.--|...+ ....| .-.++.+-++.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~----~l~~dl~fs~~dR~e~~r-r~~~~A~ll~~~G~i 76 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH----GLNADLGFSKEDREENIR-RIAEVAKLLADQGII 76 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT----TTTTT--SSHHHHHHHHH-HHHHHHHHHHHTTSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh----ccCCCCCCCHHHHHHHHH-HHHHHHHHHHhCCCe
Confidence 7789999999999999999999887 355788888762 221110111111 12222 223334444443333
Q ss_pred EEecCCceEeccccHHhh----cC--CcEEEEecCHHHHHHH
Q 023118 168 VVATGGGAVVRPLNWRFM----RQ--GITVFLNVPLDALARR 203 (287)
Q Consensus 168 via~ggG~v~~~~~~~~L----~~--g~~I~L~~~~e~l~~R 203 (287)
||.+. -.+ ..+.++.. .+ =+-||+++|++++.+|
T Consensus 77 vIva~-isp-~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 77 VIVAF-ISP-YREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp EEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred EEEee-ccC-chHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 44332 111 12333333 33 2569999999999999
No 482
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.46 E-value=5.5e-07 Score=71.78 Aligned_cols=22 Identities=41% Similarity=0.652 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhcc
Q 023118 97 LFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 97 i~LvG~~GsGKSTl~k~La~~l 118 (287)
|+|.|++||||||+++.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 483
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.45 E-value=2.4e-07 Score=91.43 Aligned_cols=54 Identities=28% Similarity=0.266 Sum_probs=51.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.+.++|+++.|.+..+++|..|++.+ |++++|+|++||||||+++.|++...|.
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~---g~rygLiG~nG~Gkst~L~~i~~~e~P~ 128 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNR---GRRYGLIGPNGSGKSTFLRAIAGREVPI 128 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecC---CceEEEEcCCCCcHhHHHHHHhcCCCCC
Confidence 58999999999999999999999999 9999999999999999999999988763
No 484
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=98.43 E-value=5.1e-07 Score=76.66 Aligned_cols=110 Identities=25% Similarity=0.215 Sum_probs=66.6
Q ss_pred hhhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118 147 EAYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT 224 (287)
Q Consensus 147 ~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~ 224 (287)
.+..|..-....++++. ...+|..|. |+|..|.+. +.|||+++++.+++|=.. .+........|
T Consensus 45 ~~~VR~~l~~~Qr~~a~-~~~vV~eGRDigTvVfPdA~------~KifLtAs~e~RA~RR~~------e~~~~g~~~~~- 110 (157)
T PF02224_consen 45 IPEVREALVEIQREIAK-KGGVVMEGRDIGTVVFPDAD------LKIFLTASPEVRARRRYK------ELQEKGKKVSY- 110 (157)
T ss_dssp SHHHHHHHHHHHHHHHT-TSCEEEEESSCCCCCCTT-S------EEEEEE--HHHHHHHHHH------HHHHTT----H-
T ss_pred CHHHHHHHHHHHHHHHH-cCCeEEecCCCceEEcCCCC------EEEEEECCHHHHHHHHHH------HHHhCCCCCCH-
Confidence 45566666777788887 455777786 888888764 899999999999999432 12222112234
Q ss_pred HHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHH
Q 023118 225 KAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLV 276 (287)
Q Consensus 225 ~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~ 276 (287)
+++.+-+.+|+..-.+ .-.-+ -.|.+..+|||+++|++|+++.|++
T Consensus 111 ---e~v~~~i~~RD~~D~~R~~aPL---~~a~DAi~IDts~lti~evv~~il~ 157 (157)
T PF02224_consen 111 ---EEVLEDIKERDERDSNREVAPL---KKAEDAIVIDTSNLTIEEVVEKILE 157 (157)
T ss_dssp ---HHHHHHHHHHHHHHHCTSSS-S---S--TTSEEEETTTS-HHHHHHHHHH
T ss_pred ---HHHHHHHHhhChhhccCccCCC---ccCCCeEEEECCCCCHHHHHHHHhC
Confidence 5566666778743332 11111 0233344599999999999999975
No 485
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.43 E-value=1.4e-07 Score=84.44 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118 76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111 (287)
Q Consensus 76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~ 111 (287)
.+..+|+++||++++ |++++|+|+||||||||+
T Consensus 6 ~~~~~l~~vsl~i~~---Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPR---NKLVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCC---CcEEEEEcCCCCCHHHHH
Confidence 356799999999999 999999999999999996
No 486
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.43 E-value=1.1e-07 Score=96.87 Aligned_cols=42 Identities=31% Similarity=0.313 Sum_probs=39.1
Q ss_pred CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++.+|+|+|+++++ |+.++|+||+|||||||+++|+|...+
T Consensus 36 ~~~~iL~~vs~~i~~---Ge~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 36 PRKHLLKNVSGVAKP---GELLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred CccccccCCEEEEeC---CeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 356799999999999 999999999999999999999998866
No 487
>PRK06696 uridine kinase; Validated
Probab=98.42 E-value=1.6e-06 Score=77.37 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|.|++||||||+++.|+..+
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999988
No 488
>PRK07933 thymidylate kinase; Validated
Probab=98.41 E-value=1.8e-05 Score=70.33 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=43.8
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCC--cCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCC
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPL--LDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDI 265 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPl--l~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~ 265 (287)
.++|||++|++...+|+..++...... -..+....| ++++.+.|.+.-..+......+ ||. ..
T Consensus 134 Dl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f---~~~v~~~Y~~~~~~~~~~~~~~-----------ida-~~ 198 (213)
T PRK07933 134 DLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGL---QQRTGAVYAELAAQGWGGPWLV-----------VDP-DV 198 (213)
T ss_pred CEEEEecCCHHHHHHHHHhhccccCCcccccccccHHH---HHHHHHHHHHHHHhcCCCCeEE-----------eCC-CC
Confidence 689999999999999998765311000 001111122 3344444444433321112222 677 46
Q ss_pred CHHHHHHHHHHHH
Q 023118 266 TPTTIAMEVLVQA 278 (287)
Q Consensus 266 t~~eva~~i~~~i 278 (287)
++++|.++|.+.+
T Consensus 199 ~~e~v~~~i~~~~ 211 (213)
T PRK07933 199 DPAALAARLAAAL 211 (213)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 489
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.40 E-value=7.2e-06 Score=70.88 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..|+|+||+||||+|+.+.|....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999998876
No 490
>PLN03140 ABC transporter G family member; Provisional
Probab=98.38 E-value=1.7e-07 Score=103.69 Aligned_cols=42 Identities=29% Similarity=0.278 Sum_probs=39.3
Q ss_pred CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.+.+|+|+|+.+++ |+.++|+||||||||||+++|+|.+.+.
T Consensus 177 ~~~IL~~vs~~i~~---Ge~~~llGpnGSGKSTLLk~LaG~l~~~ 218 (1470)
T PLN03140 177 KLTILKDASGIIKP---SRMTLLLGPPSSGKTTLLLALAGKLDPS 218 (1470)
T ss_pred cceeccCCeEEEeC---CeEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 36799999999999 9999999999999999999999999773
No 491
>PRK12338 hypothetical protein; Provisional
Probab=98.37 E-value=1.5e-05 Score=75.14 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=92.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh----hhh--hch-----------------hhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI----FKE--SGE-----------------AYF 150 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~----~~~--~g~-----------------~~f 150 (287)
...|+|.|++||||||+++.||..++..++..++.+.+.+.|..-.++ ... ..+ ..|
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf 83 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGF 83 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHH
Confidence 458899999999999999999999999988444554444445322211 110 000 011
Q ss_pred hhhHHHH-------HHHhhcCCCeEEecCCceEeccccHHhhc---C--CcEEEEecCHHHHHHHHhhcCCCCCCCcCCC
Q 023118 151 REYESKA-------LQKLSLVPQQVVATGGGAVVRPLNWRFMR---Q--GITVFLNVPLDALARRIAAVGTDSFPLLDYD 218 (287)
Q Consensus 151 r~~e~~~-------l~~l~~~~~~via~ggG~v~~~~~~~~L~---~--g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~ 218 (287)
...-..+ +.........+|..|-.. .|.-..... . -..++|..+.+...+|...|..... .
T Consensus 84 ~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl--~P~~i~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~-----r 156 (319)
T PRK12338 84 EEHASFVIPAIEKVIERAVTDSDDIVIEGVHL--VPGLIDIEQFEENASIHFFILSADEEVHKERFVKRAMEIK-----R 156 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEEEeccc--cHHHHhhhhhcccCceEEEEEECCHHHHHHHHHHhhhccC-----C
Confidence 1111111 111122334566665422 232222111 1 1346667899999999987642111 1
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 219 SADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+..|.+.+..+..+.+.=...=.+.++. .+++.+.++.++.+++.|..+..
T Consensus 157 -~~~~l~~f~~Ir~Iq~~l~~~A~e~~Vp-------------vI~N~did~Tv~~ile~I~e~s~ 207 (319)
T PRK12338 157 -GGKQLEYFRENRIIHDHLVEQAREHNVP-------------VIKNDDIDCTVKKMLSYIREVCV 207 (319)
T ss_pred -chhhhhChHHHHHHHHHHHHhHhhCCCc-------------eeCCCcHHHHHHHHHHHHHhheE
Confidence 1134444555655544333331224444 35667899999999999987643
No 492
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.36 E-value=3.6e-07 Score=101.46 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=40.4
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+.+|+|+||++++ |+.++|+||+|||||||+++|+|.+.+ +.|.+
T Consensus 439 ~~~l~~i~l~i~~---G~~~~I~G~~GsGKSTLl~~l~G~~~~---~~G~i 483 (1490)
T TIGR01271 439 TPVLKNISFKLEK---GQLLAVAGSTGSGKSSLLMMIMGELEP---SEGKI 483 (1490)
T ss_pred CcceeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceE
Confidence 4589999999999 999999999999999999999999987 45543
No 493
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.36 E-value=1.7e-05 Score=70.54 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
+|..|+|=|.-||||||+++.|+..+...
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~ 30 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEER 30 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999987553
No 494
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=3.6e-07 Score=88.53 Aligned_cols=55 Identities=22% Similarity=0.160 Sum_probs=51.2
Q ss_pred ccEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 64 HDVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 64 ~~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
+++-+.+|+|.| +..+++++++|-|.- ..+|+||||+|.|||||+++|.|.+.|.
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDm---dSRiaIVGPNGVGKSTlLkLL~Gkl~P~ 640 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDM---DSRIAIVGPNGVGKSTLLKLLIGKLDPN 640 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccc---cceeEEECCCCccHHHHHHHHhcCCCCC
Confidence 579999999999 567899999999987 8899999999999999999999999995
No 495
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.35 E-value=1.6e-06 Score=72.65 Aligned_cols=103 Identities=23% Similarity=0.289 Sum_probs=55.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc---CC--ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL---DY--TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVA 170 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l---~~--~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via 170 (287)
.+.|+|++||||||+++.|++.+ ++ .++++|.+......+.... .......++... ...+.+......|+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~---~~~~~~~~~~~~-~~a~~l~~~G~~VIi 76 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFS---REDREENIRRIA-EVAKLLADAGLIVIA 76 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCC---cchHHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 37899999999999999999998 43 4567777654332111111 111112222211 122333333333444
Q ss_pred cCCceEeccccHHhhc---C---CcEEEEecCHHHHHHHH
Q 023118 171 TGGGAVVRPLNWRFMR---Q---GITVFLNVPLDALARRI 204 (287)
Q Consensus 171 ~ggG~v~~~~~~~~L~---~---g~~I~L~~~~e~l~~Ri 204 (287)
.... .....+..++ + -.+|||++|++.+.+|.
T Consensus 77 d~~~--~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~ 114 (149)
T cd02027 77 AFIS--PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRD 114 (149)
T ss_pred ccCC--CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhC
Confidence 3321 1122222221 1 24699999999999994
No 496
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=83.50 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=56.5
Q ss_pred ccEEEcceEEEcC-----------CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH
Q 023118 64 HDVESGTFCDSLD-----------GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL 132 (287)
Q Consensus 64 ~~l~~~~l~~~~~-----------~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~ 132 (287)
++++.+++...|. ...+++++||++.+ |+.++|||.|||||||++..|.+++.+ + |.+.
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~---gqTlGlVGESGSGKsTlG~allrL~~s---~-G~I~--- 344 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR---GQTLGLVGESGSGKSTLGLALLRLIPS---Q-GEIR--- 344 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecC---CCeEEEEecCCCCcchHHHHHHhhcCc---C-ceEE---
Confidence 4799999887772 24689999999999 999999999999999999999999987 4 5444
Q ss_pred hCCCchhhh
Q 023118 133 MGGTSVAQI 141 (287)
Q Consensus 133 ~~G~~i~~~ 141 (287)
+.|.++..+
T Consensus 345 F~G~~i~~~ 353 (534)
T COG4172 345 FDGQDIDGL 353 (534)
T ss_pred ECCcccccc
Confidence 468777554
No 497
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.34 E-value=4.7e-07 Score=80.22 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=48.1
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+.+++.++.+.|. ..+++-|+|++++. |.+..|+|.||+|||||+|+|+|..-
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~---gsRcLlVGaNGaGKtTlLKiLsGKhm 65 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPA---GSRCLLVGANGAGKTTLLKILSGKHM 65 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCC---CceEEEEecCCCchhhhHHHhcCccc
Confidence 4699999999996 45799999999999 99999999999999999999998753
No 498
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.33 E-value=4.6e-06 Score=72.49 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM 133 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~ 133 (287)
.|+|+|..||||||++++++. +|++.+|+|.+..+.+
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~ 38 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELY 38 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCT
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHh
Confidence 689999999999999999998 9999999999965554
No 499
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.29 E-value=1.5e-05 Score=68.69 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++.|+|+||+|||||||.+.|...++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 78999999999999999999987654
No 500
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.28 E-value=4.1e-07 Score=100.41 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=37.0
Q ss_pred CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.+++|+|+|+.+++ |+.++|+||||||||||+++|+|.+
T Consensus 73 ~~~iL~~vs~~i~~---Ge~~aIlG~nGsGKSTLLk~LaG~~ 111 (1394)
T TIGR00956 73 TFDILKPMDGLIKP---GELTVVLGRPGSGCSTLLKTIASNT 111 (1394)
T ss_pred cceeeeCCEEEEEC---CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999 9999999999999999999999986
Done!