Query 023118
Match_columns 287
No_of_seqs 345 out of 2859
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 16:40:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwj_A ATSK2; P loop, shikimat 100.0 1.9E-39 6.6E-44 293.4 11.7 222 64-285 16-241 (250)
2 3vaa_A Shikimate kinase, SK; s 100.0 8.8E-31 3E-35 226.6 16.6 185 78-283 12-198 (199)
3 3trf_A Shikimate kinase, SK; a 100.0 1E-27 3.6E-32 203.5 15.3 171 94-283 5-177 (185)
4 1kag_A SKI, shikimate kinase I 99.9 3.7E-25 1.3E-29 185.5 11.9 167 94-280 4-172 (173)
5 1via_A Shikimate kinase; struc 99.9 3.9E-24 1.3E-28 180.6 14.5 160 95-280 5-166 (175)
6 1zuh_A Shikimate kinase; alpha 99.9 1.3E-23 4.5E-28 175.9 14.5 158 94-278 7-167 (168)
7 2iyv_A Shikimate kinase, SK; t 99.9 1.1E-23 3.8E-28 178.7 14.0 166 94-280 2-168 (184)
8 1e6c_A Shikimate kinase; phosp 99.9 3E-22 1E-26 167.5 15.0 164 95-279 3-169 (173)
9 2pt5_A Shikimate kinase, SK; a 99.9 3.6E-21 1.2E-25 160.4 13.1 161 96-280 2-163 (168)
10 3fdi_A Uncharacterized protein 99.8 4.2E-20 1.4E-24 161.1 14.1 169 94-281 6-199 (201)
11 3hdt_A Putative kinase; struct 99.8 3E-19 1E-23 158.5 13.0 169 94-280 14-218 (223)
12 1y63_A LMAJ004144AAA protein; 99.8 7.9E-19 2.7E-23 149.7 7.9 170 83-283 2-180 (184)
13 4eun_A Thermoresistant glucoki 99.8 1.5E-17 5E-22 143.4 14.7 161 86-281 24-194 (200)
14 4e22_A Cytidylate kinase; P-lo 99.7 5.4E-18 1.8E-22 152.0 11.8 169 94-283 27-247 (252)
15 1knq_A Gluconate kinase; ALFA/ 99.7 1.9E-17 6.6E-22 138.9 14.3 155 94-280 8-173 (175)
16 3iij_A Coilin-interacting nucl 99.7 6.8E-18 2.3E-22 142.6 6.9 158 94-283 11-176 (180)
17 2c95_A Adenylate kinase 1; tra 99.7 9.8E-17 3.3E-21 136.2 12.9 169 94-282 9-195 (196)
18 1q3t_A Cytidylate kinase; nucl 99.7 2E-17 7E-22 146.2 7.7 165 94-281 16-235 (236)
19 2h92_A Cytidylate kinase; ross 99.7 1.7E-17 5.7E-22 144.2 6.2 166 94-280 3-217 (219)
20 3be4_A Adenylate kinase; malar 99.7 1.4E-16 4.8E-21 139.1 11.8 167 94-277 5-216 (217)
21 3lw7_A Adenylate kinase relate 99.7 3.3E-16 1.1E-20 129.3 13.1 158 95-282 2-178 (179)
22 1qhx_A CPT, protein (chloramph 99.7 1.3E-16 4.4E-21 133.9 9.9 156 94-278 3-176 (178)
23 1aky_A Adenylate kinase; ATP:A 99.7 5E-16 1.7E-20 135.4 12.9 170 94-280 4-219 (220)
24 3kb2_A SPBC2 prophage-derived 99.7 1.4E-15 4.9E-20 126.1 14.6 152 95-285 2-171 (173)
25 3uie_A Adenylyl-sulfate kinase 99.7 2.1E-16 7.3E-21 136.1 9.8 172 69-281 3-195 (200)
26 1cke_A CK, MSSA, protein (cyti 99.7 2.2E-16 7.5E-21 137.4 9.9 172 94-282 5-224 (227)
27 3ake_A Cytidylate kinase; CMP 99.7 2.7E-16 9.2E-21 134.7 9.3 155 96-279 4-207 (208)
28 1kht_A Adenylate kinase; phosp 99.6 2E-15 6.8E-20 127.3 14.3 168 93-278 2-191 (192)
29 1zak_A Adenylate kinase; ATP:A 99.6 1.5E-15 5E-20 132.6 13.8 175 94-284 5-214 (222)
30 1jjv_A Dephospho-COA kinase; P 99.6 1.6E-15 5.5E-20 130.6 13.8 153 95-283 3-199 (206)
31 1ak2_A Adenylate kinase isoenz 99.6 4.8E-15 1.6E-19 130.7 16.1 171 94-281 16-231 (233)
32 2rhm_A Putative kinase; P-loop 99.6 1E-16 3.6E-21 135.7 3.1 165 94-283 5-187 (193)
33 3cm0_A Adenylate kinase; ATP-b 99.6 2.9E-15 9.8E-20 126.4 12.0 164 93-278 3-184 (186)
34 3t61_A Gluconokinase; PSI-biol 99.6 3.4E-15 1.2E-19 128.3 12.5 151 94-281 18-180 (202)
35 2bwj_A Adenylate kinase 5; pho 99.6 2.4E-15 8.3E-20 127.8 11.1 169 94-282 12-198 (199)
36 2cdn_A Adenylate kinase; phosp 99.6 6.1E-15 2.1E-19 126.6 13.6 161 94-279 20-200 (201)
37 3cr8_A Sulfate adenylyltranfer 99.6 5E-16 1.7E-20 154.3 7.7 163 87-281 365-540 (552)
38 1qf9_A UMP/CMP kinase, protein 99.6 8.1E-15 2.8E-19 123.5 13.5 167 94-280 6-191 (194)
39 3r20_A Cytidylate kinase; stru 99.6 8.6E-15 3E-19 130.7 13.2 172 94-283 9-230 (233)
40 2vli_A Antibiotic resistance p 99.6 2E-15 6.9E-20 126.9 8.4 156 94-283 5-174 (183)
41 1zd8_A GTP:AMP phosphotransfer 99.6 5.4E-15 1.9E-19 129.5 11.4 113 94-207 7-128 (227)
42 1ukz_A Uridylate kinase; trans 99.6 1.1E-14 3.7E-19 124.9 12.7 168 94-281 15-202 (203)
43 1tev_A UMP-CMP kinase; ploop, 99.6 4.9E-15 1.7E-19 125.0 9.6 166 94-280 3-194 (196)
44 1vht_A Dephospho-COA kinase; s 99.6 1.7E-14 5.8E-19 125.3 11.4 158 94-283 4-197 (218)
45 2if2_A Dephospho-COA kinase; a 99.6 1.7E-14 5.7E-19 123.8 11.0 156 95-283 2-194 (204)
46 3a4m_A L-seryl-tRNA(SEC) kinas 99.5 5.2E-14 1.8E-18 126.5 11.3 154 94-280 4-173 (260)
47 1nks_A Adenylate kinase; therm 99.5 2.1E-13 7.1E-18 114.8 13.1 160 95-278 2-193 (194)
48 1uf9_A TT1252 protein; P-loop, 99.5 4.6E-14 1.6E-18 120.3 8.8 156 94-283 8-196 (203)
49 2jaq_A Deoxyguanosine kinase; 99.5 1.4E-13 4.8E-18 117.0 11.0 75 188-282 126-202 (205)
50 4g1u_C Hemin import ATP-bindin 99.5 2.3E-14 7.7E-19 130.1 5.3 70 62-140 8-77 (266)
51 1m7g_A Adenylylsulfate kinase; 99.5 1.6E-14 5.3E-19 125.4 3.1 159 86-280 20-202 (211)
52 1g6h_A High-affinity branched- 99.5 3E-14 1E-18 128.4 4.8 66 64-138 6-71 (257)
53 2pcj_A ABC transporter, lipopr 99.5 2.8E-14 9.7E-19 126.0 4.5 67 64-139 3-69 (224)
54 1ji0_A ABC transporter; ATP bi 99.5 3.7E-14 1.3E-18 126.5 5.1 66 64-138 5-70 (240)
55 1b0u_A Histidine permease; ABC 99.4 4.4E-14 1.5E-18 127.8 4.8 66 64-138 5-70 (262)
56 1vpl_A ABC transporter, ATP-bi 99.4 6.9E-14 2.4E-18 126.2 4.9 61 63-129 13-73 (256)
57 1zp6_A Hypothetical protein AT 99.4 9.6E-14 3.3E-18 117.5 5.2 163 88-281 6-176 (191)
58 1uj2_A Uridine-cytidine kinase 99.4 7.8E-14 2.7E-18 124.4 4.9 165 94-283 22-236 (252)
59 2olj_A Amino acid ABC transpor 99.4 7.3E-14 2.5E-18 126.6 4.7 65 65-138 24-88 (263)
60 2ihy_A ABC transporter, ATP-bi 99.4 8.1E-14 2.8E-18 127.3 5.0 66 64-138 20-85 (279)
61 3rlf_A Maltose/maltodextrin im 99.4 9E-14 3.1E-18 132.3 5.1 65 65-138 3-67 (381)
62 3tif_A Uncharacterized ABC tra 99.4 6.1E-14 2.1E-18 124.8 3.7 67 65-140 1-71 (235)
63 1sgw_A Putative ABC transporte 99.4 9E-14 3.1E-18 122.4 4.4 66 63-138 8-73 (214)
64 3tui_C Methionine import ATP-b 99.4 8.2E-14 2.8E-18 131.9 4.2 75 55-138 14-92 (366)
65 3fvq_A Fe(3+) IONS import ATP- 99.4 1.1E-13 3.7E-18 130.8 4.9 65 65-138 4-68 (359)
66 2bdt_A BH3686; alpha-beta prot 99.4 5.4E-13 1.8E-17 113.1 8.7 156 94-275 2-168 (189)
67 3gfo_A Cobalt import ATP-bindi 99.4 9.4E-14 3.2E-18 126.7 4.2 66 64-138 6-72 (275)
68 2grj_A Dephospho-COA kinase; T 99.4 1.6E-12 5.3E-17 112.5 11.5 147 94-281 12-187 (192)
69 1mv5_A LMRA, multidrug resista 99.4 1.1E-13 3.8E-18 123.6 4.0 65 65-138 1-66 (243)
70 2d2e_A SUFC protein; ABC-ATPas 99.4 1.1E-13 3.8E-18 124.2 3.7 65 65-138 3-69 (250)
71 2pbr_A DTMP kinase, thymidylat 99.4 2.3E-12 8E-17 108.6 11.6 160 96-282 2-193 (195)
72 2yyz_A Sugar ABC transporter, 99.4 1.8E-13 6.3E-18 129.2 5.1 59 65-129 3-61 (359)
73 2yvu_A Probable adenylyl-sulfa 99.4 4.4E-13 1.5E-17 113.5 6.9 157 94-282 13-185 (186)
74 2pez_A Bifunctional 3'-phospho 99.4 6.1E-13 2.1E-17 112.0 7.4 152 94-280 5-175 (179)
75 3umf_A Adenylate kinase; rossm 99.4 7E-12 2.4E-16 110.6 14.5 166 94-281 29-214 (217)
76 1e4v_A Adenylate kinase; trans 99.4 4.5E-12 1.5E-16 109.9 13.1 110 96-208 2-124 (214)
77 2ff7_A Alpha-hemolysin translo 99.4 1.9E-13 6.6E-18 122.5 4.4 66 65-139 7-74 (247)
78 2zu0_C Probable ATP-dependent 99.4 1.7E-13 5.8E-18 124.2 4.1 67 64-139 19-87 (267)
79 2ixe_A Antigen peptide transpo 99.4 2.2E-13 7.7E-18 123.7 4.8 67 64-139 15-84 (271)
80 2it1_A 362AA long hypothetical 99.4 2.3E-13 7.7E-18 128.8 5.0 59 65-129 3-61 (362)
81 3fb4_A Adenylate kinase; psych 99.4 9.4E-12 3.2E-16 107.4 14.7 107 96-207 2-127 (216)
82 1v43_A Sugar-binding transport 99.4 2.9E-13 9.8E-18 128.5 5.2 59 65-129 11-69 (372)
83 2qor_A Guanylate kinase; phosp 99.4 7.1E-12 2.4E-16 108.0 13.4 153 94-283 12-199 (204)
84 2xb4_A Adenylate kinase; ATP-b 99.4 5.7E-12 2E-16 110.4 12.9 107 96-208 2-127 (223)
85 1g29_1 MALK, maltose transport 99.4 2.9E-13 9.9E-18 128.5 4.9 59 65-129 3-61 (372)
86 1z47_A CYSA, putative ABC-tran 99.4 2.2E-13 7.6E-18 128.5 3.7 61 63-129 12-73 (355)
87 2yz2_A Putative ABC transporte 99.4 3.4E-13 1.2E-17 122.1 4.7 65 65-138 2-71 (266)
88 3nh6_A ATP-binding cassette SU 99.3 3.4E-13 1.2E-17 124.8 4.5 68 64-140 52-120 (306)
89 2jeo_A Uridine-cytidine kinase 99.3 3.1E-12 1.1E-16 113.5 10.5 44 75-121 9-52 (245)
90 2f6r_A COA synthase, bifunctio 99.3 1.2E-11 4E-16 112.6 14.5 158 94-283 75-271 (281)
91 2cbz_A Multidrug resistance-as 99.3 4.6E-13 1.6E-17 119.3 4.1 58 65-128 3-62 (237)
92 2nq2_C Hypothetical ABC transp 99.3 6.6E-13 2.3E-17 119.5 5.1 58 65-128 4-62 (253)
93 3d31_A Sulfate/molybdate ABC t 99.3 3.7E-13 1.3E-17 126.7 3.4 58 65-129 1-58 (348)
94 1oxx_K GLCV, glucose, ABC tran 99.3 2.3E-13 7.9E-18 128.3 1.9 59 65-129 3-63 (353)
95 3dl0_A Adenylate kinase; phosp 99.3 2.4E-11 8.2E-16 105.0 14.0 106 96-207 2-127 (216)
96 2pze_A Cystic fibrosis transme 99.3 8.1E-13 2.8E-17 117.0 4.7 59 64-128 5-65 (229)
97 3tlx_A Adenylate kinase 2; str 99.3 2.2E-11 7.4E-16 108.3 13.9 169 94-279 29-242 (243)
98 4eaq_A DTMP kinase, thymidylat 99.3 6E-11 2.1E-15 104.9 16.4 180 81-283 13-227 (229)
99 4i1u_A Dephospho-COA kinase; s 99.3 2.8E-11 9.6E-16 106.3 13.5 162 94-283 9-204 (210)
100 2v54_A DTMP kinase, thymidylat 99.3 4.3E-12 1.5E-16 108.2 8.0 164 93-284 3-194 (204)
101 1x6v_B Bifunctional 3'-phospho 99.3 3.5E-12 1.2E-16 128.2 8.5 158 94-281 52-223 (630)
102 2bbw_A Adenylate kinase 4, AK4 99.3 5.5E-11 1.9E-15 105.2 15.0 174 94-283 27-237 (246)
103 2qt1_A Nicotinamide riboside k 99.3 4.7E-11 1.6E-15 102.6 14.0 169 85-281 15-206 (207)
104 3a8t_A Adenylate isopentenyltr 99.3 2E-12 6.8E-17 121.1 5.4 119 94-216 40-200 (339)
105 1ly1_A Polynucleotide kinase; 99.3 1.7E-11 5.7E-16 102.1 10.5 111 95-208 3-127 (181)
106 2plr_A DTMP kinase, probable t 99.3 8.4E-11 2.9E-15 100.3 14.6 171 93-284 3-211 (213)
107 3tr0_A Guanylate kinase, GMP k 99.2 6.8E-11 2.3E-15 100.7 12.3 32 85-119 1-32 (205)
108 3gd7_A Fusion complex of cysti 99.2 4.5E-12 1.5E-16 120.9 4.4 66 64-139 18-85 (390)
109 3sr0_A Adenylate kinase; phosp 99.2 1.7E-10 5.7E-15 100.8 13.7 112 96-207 2-124 (206)
110 2ghi_A Transport protein; mult 99.2 8.7E-12 3E-16 112.5 5.5 66 64-139 16-84 (260)
111 2z0h_A DTMP kinase, thymidylat 99.2 1.5E-10 5.2E-15 97.8 12.9 163 96-283 2-194 (197)
112 1nn5_A Similar to deoxythymidy 99.2 2.2E-10 7.5E-15 98.1 14.0 165 94-284 9-204 (215)
113 2pjz_A Hypothetical protein ST 99.2 5.8E-12 2E-16 114.1 4.0 63 65-138 1-67 (263)
114 1m8p_A Sulfate adenylyltransfe 99.2 4.2E-12 1.5E-16 126.6 2.9 157 94-280 396-566 (573)
115 3b5x_A Lipid A export ATP-bind 99.2 1E-11 3.6E-16 123.7 5.5 68 64-140 340-409 (582)
116 2onk_A Molybdate/tungstate ABC 99.2 8.8E-12 3E-16 111.3 4.2 62 65-138 1-62 (240)
117 2axn_A 6-phosphofructo-2-kinas 99.2 8.4E-11 2.9E-15 116.0 11.6 123 94-217 35-177 (520)
118 2qi9_C Vitamin B12 import ATP- 99.2 7.1E-12 2.4E-16 112.6 3.0 61 65-139 4-64 (249)
119 3b60_A Lipid A export ATP-bind 99.2 1.1E-11 3.9E-16 123.4 4.4 68 64-140 340-409 (582)
120 3qf4_B Uncharacterized ABC tra 99.1 2.3E-11 7.8E-16 121.7 5.5 68 65-141 354-422 (598)
121 3qf4_A ABC transporter, ATP-bi 99.1 1.5E-11 5.1E-16 122.9 4.1 68 65-141 341-410 (587)
122 2yl4_A ATP-binding cassette SU 99.1 1.7E-11 5.8E-16 122.5 4.3 67 66-141 342-411 (595)
123 2wwf_A Thymidilate kinase, put 99.1 3.1E-11 1.1E-15 103.4 5.4 32 94-125 10-41 (212)
124 2vp4_A Deoxynucleoside kinase; 99.1 1.9E-10 6.4E-15 101.1 10.2 77 188-283 148-227 (230)
125 4a82_A Cystic fibrosis transme 99.1 2.7E-11 9.2E-16 120.7 5.3 68 65-141 339-408 (578)
126 1p5z_B DCK, deoxycytidine kina 99.1 5.7E-10 2E-14 99.7 13.1 77 188-283 176-261 (263)
127 3lnc_A Guanylate kinase, GMP k 99.1 7.3E-11 2.5E-15 103.4 5.8 38 78-118 14-52 (231)
128 1bif_A 6-phosphofructo-2-kinas 99.1 1.4E-10 4.7E-15 112.7 8.0 141 94-243 39-200 (469)
129 2gks_A Bifunctional SAT/APS ki 99.1 1.9E-11 6.4E-16 121.3 1.5 150 94-280 372-540 (546)
130 3gmt_A Adenylate kinase; ssgci 99.1 1.4E-09 4.8E-14 96.7 13.0 110 94-208 8-132 (230)
131 1htw_A HI0065; nucleotide-bind 99.1 4.5E-12 1.5E-16 106.4 -3.1 63 66-138 8-70 (158)
132 4f4c_A Multidrug resistance pr 99.1 7.4E-11 2.5E-15 127.6 4.9 68 65-141 1076-1146(1321)
133 2bbs_A Cystic fibrosis transme 99.1 4.2E-11 1.4E-15 109.9 2.5 57 64-128 39-95 (290)
134 2p5t_B PEZT; postsegregational 99.0 4.2E-10 1.4E-14 100.4 7.1 109 94-207 32-157 (253)
135 3asz_A Uridine kinase; cytidin 99.0 8.1E-10 2.8E-14 94.9 8.3 36 94-129 6-43 (211)
136 2j41_A Guanylate kinase; GMP, 99.0 2.1E-09 7.1E-14 91.5 10.7 31 87-120 2-32 (207)
137 4f4c_A Multidrug resistance pr 99.0 4.5E-10 1.5E-14 121.5 6.2 67 65-140 415-484 (1321)
138 3g5u_A MCG1178, multidrug resi 98.9 2.6E-10 8.8E-15 123.1 3.9 66 65-139 387-455 (1284)
139 2ze6_A Isopentenyl transferase 98.9 5.9E-10 2E-14 99.7 5.6 108 95-208 2-139 (253)
140 1z6g_A Guanylate kinase; struc 98.9 7.7E-09 2.6E-13 90.3 12.4 38 78-118 10-47 (218)
141 2iw3_A Elongation factor 3A; a 98.9 2.5E-10 8.6E-15 119.6 3.3 60 64-129 670-731 (986)
142 3bk7_A ABC transporter ATP-bin 98.9 6.9E-10 2.4E-14 111.4 6.1 59 62-127 80-147 (607)
143 3lv8_A DTMP kinase, thymidylat 98.9 2.5E-08 8.6E-13 88.8 15.5 80 188-287 156-235 (236)
144 3tau_A Guanylate kinase, GMP k 98.9 3.7E-09 1.3E-13 91.4 9.4 27 94-120 8-34 (208)
145 3g5u_A MCG1178, multidrug resi 98.9 5.3E-10 1.8E-14 120.7 4.7 68 65-141 1030-1100(1284)
146 1yqt_A RNAse L inhibitor; ATP- 98.9 9.7E-10 3.3E-14 108.8 5.6 55 66-127 21-77 (538)
147 1g8f_A Sulfate adenylyltransfe 98.9 1.4E-09 4.7E-14 107.0 6.1 34 94-127 395-435 (511)
148 3a00_A Guanylate kinase, GMP k 98.9 3.4E-09 1.2E-13 89.8 7.6 26 94-119 1-26 (186)
149 4edh_A DTMP kinase, thymidylat 98.9 8.4E-08 2.9E-12 83.9 16.7 78 188-284 133-210 (213)
150 2v9p_A Replication protein E1; 98.9 9.4E-11 3.2E-15 108.4 -2.8 50 65-118 101-150 (305)
151 2ga8_A Hypothetical 39.9 kDa p 98.9 6.6E-11 2.3E-15 111.5 -4.0 77 79-160 10-108 (359)
152 1yqt_A RNAse L inhibitor; ATP- 98.8 2.7E-09 9.4E-14 105.5 6.7 58 64-128 286-343 (538)
153 3bk7_A ABC transporter ATP-bin 98.8 2.8E-09 9.4E-14 107.0 6.5 58 64-128 356-413 (607)
154 1kgd_A CASK, peripheral plasma 98.8 1.3E-08 4.5E-13 85.8 9.7 27 93-119 4-30 (180)
155 1ltq_A Polynucleotide kinase; 98.8 1.1E-08 3.9E-13 92.4 9.0 110 95-208 3-127 (301)
156 4tmk_A Protein (thymidylate ki 98.8 1.9E-07 6.6E-12 81.7 15.8 77 188-284 134-210 (213)
157 3ozx_A RNAse L inhibitor; ATP 98.8 5E-09 1.7E-13 103.7 6.3 58 64-128 268-325 (538)
158 4hlc_A DTMP kinase, thymidylat 98.8 3.2E-07 1.1E-11 79.6 16.5 76 188-284 126-204 (205)
159 2iw3_A Elongation factor 3A; a 98.7 9.3E-09 3.2E-13 107.8 7.1 49 65-116 435-483 (986)
160 3zvl_A Bifunctional polynucleo 98.7 1.4E-08 4.7E-13 97.3 7.8 96 94-208 258-358 (416)
161 3tmk_A Thymidylate kinase; pho 98.7 5.4E-08 1.8E-12 85.5 10.9 167 93-284 4-206 (216)
162 3v9p_A DTMP kinase, thymidylat 98.7 1.1E-07 3.9E-12 84.0 12.6 28 94-121 25-52 (227)
163 3c8u_A Fructokinase; YP_612366 98.7 1.2E-08 4.1E-13 87.9 5.9 27 94-120 22-48 (208)
164 2obl_A ESCN; ATPase, hydrolase 98.7 2.5E-09 8.7E-14 100.3 1.3 53 64-120 44-97 (347)
165 2dpy_A FLII, flagellum-specifi 98.7 1.6E-09 5.4E-14 104.8 -0.2 58 64-128 130-188 (438)
166 3d3q_A TRNA delta(2)-isopenten 98.7 1.3E-08 4.6E-13 95.2 6.1 103 95-205 8-136 (340)
167 1gvn_B Zeta; postsegregational 98.7 3.1E-08 1.1E-12 90.2 8.5 113 94-207 33-162 (287)
168 2ocp_A DGK, deoxyguanosine kin 98.7 3.8E-07 1.3E-11 80.1 14.8 25 94-118 2-26 (241)
169 3crm_A TRNA delta(2)-isopenten 98.6 1.4E-08 4.7E-13 94.5 3.6 79 95-175 6-104 (323)
170 1sq5_A Pantothenate kinase; P- 98.6 2.6E-09 8.9E-14 98.2 -2.8 50 65-119 37-105 (308)
171 3j16_B RLI1P; ribosome recycli 98.6 3.6E-08 1.2E-12 98.9 5.2 52 70-128 82-134 (608)
172 3b85_A Phosphate starvation-in 98.5 3.4E-09 1.1E-13 92.5 -2.6 45 73-128 8-52 (208)
173 3ld9_A DTMP kinase, thymidylat 98.5 2.5E-07 8.6E-12 81.7 8.8 73 187-283 146-218 (223)
174 4gp7_A Metallophosphoesterase; 98.5 5.5E-08 1.9E-12 81.5 3.8 31 83-116 1-31 (171)
175 2qm8_A GTPase/ATPase; G protei 98.5 2.6E-09 8.9E-14 99.7 -4.8 53 65-120 29-81 (337)
176 1znw_A Guanylate kinase, GMP k 98.5 5.4E-08 1.9E-12 83.7 3.6 37 78-119 9-45 (207)
177 2eyu_A Twitching motility prot 98.5 1.5E-08 5E-13 91.4 -0.1 48 64-120 4-51 (261)
178 2qag_B Septin-6, protein NEDD5 98.5 2.5E-08 8.5E-13 96.1 1.4 49 65-118 16-66 (427)
179 2npi_A Protein CLP1; CLP1-PCF1 98.5 3.9E-09 1.3E-13 102.6 -4.2 48 64-120 117-164 (460)
180 3tqc_A Pantothenate kinase; bi 98.5 1.5E-07 5E-12 87.5 5.8 47 70-119 65-117 (321)
181 3aez_A Pantothenate kinase; tr 98.5 7E-09 2.4E-13 95.9 -3.2 51 65-120 43-116 (312)
182 3j16_B RLI1P; ribosome recycli 98.4 1.1E-07 3.8E-12 95.4 5.1 50 69-121 350-405 (608)
183 1rz3_A Hypothetical protein rb 98.4 5.4E-07 1.8E-11 77.1 8.7 25 94-118 22-46 (201)
184 1pui_A ENGB, probable GTP-bind 98.4 4.2E-08 1.4E-12 83.3 1.3 48 65-118 3-50 (210)
185 2pt7_A CAG-ALFA; ATPase, prote 98.4 1.2E-08 4.2E-13 94.9 -2.3 52 68-128 151-202 (330)
186 3hjn_A DTMP kinase, thymidylat 98.4 2.4E-06 8.1E-11 73.6 11.7 72 188-283 123-194 (197)
187 2gza_A Type IV secretion syste 98.4 2.7E-08 9.1E-13 93.6 -1.3 56 67-128 137-206 (361)
188 3ozx_A RNAse L inhibitor; ATP 98.4 2.5E-07 8.7E-12 91.5 5.5 54 69-128 3-56 (538)
189 3euj_A Chromosome partition pr 98.4 1.3E-07 4.4E-12 92.4 3.1 53 78-140 17-69 (483)
190 1tf7_A KAIC; homohexamer, hexa 98.4 6E-08 2E-12 95.3 0.5 54 64-120 11-67 (525)
191 3ux8_A Excinuclease ABC, A sub 98.3 2E-07 6.7E-12 94.2 3.7 32 77-111 30-61 (670)
192 1tq4_A IIGP1, interferon-induc 98.3 7.7E-08 2.6E-12 92.3 0.1 45 78-128 36-100 (413)
193 1a7j_A Phosphoribulokinase; tr 98.3 9.4E-07 3.2E-11 80.6 7.2 36 94-129 5-45 (290)
194 3b9q_A Chloroplast SRP recepto 98.3 7.5E-08 2.6E-12 88.6 -0.4 48 70-120 79-126 (302)
195 3ney_A 55 kDa erythrocyte memb 98.3 8.7E-06 3E-10 70.5 12.3 27 93-119 18-44 (197)
196 2x8a_A Nuclear valosin-contain 98.2 2.2E-07 7.6E-12 84.0 1.3 45 74-123 29-73 (274)
197 1gtv_A TMK, thymidylate kinase 98.2 7.1E-08 2.4E-12 82.4 -2.1 25 96-120 2-26 (214)
198 2qag_C Septin-7; cell cycle, c 98.2 4.6E-07 1.6E-11 87.0 3.3 48 64-120 10-57 (418)
199 1ixz_A ATP-dependent metallopr 98.2 1.3E-07 4.4E-12 83.5 -1.3 54 66-124 26-79 (254)
200 1in4_A RUVB, holliday junction 98.2 9.3E-08 3.2E-12 88.5 -2.5 54 66-122 19-79 (334)
201 1iy2_A ATP-dependent metallopr 98.1 1.9E-07 6.4E-12 83.8 -1.3 54 66-124 50-103 (278)
202 1p9r_A General secretion pathw 98.1 1.8E-07 6.1E-12 89.9 -1.5 52 65-121 143-194 (418)
203 1s96_A Guanylate kinase, GMP k 98.1 1.3E-06 4.3E-11 76.6 3.8 27 94-120 16-42 (219)
204 1ex7_A Guanylate kinase; subst 98.1 6.6E-06 2.3E-10 70.5 8.2 24 95-118 2-25 (186)
205 2og2_A Putative signal recogni 98.1 6E-07 2.1E-11 84.6 1.5 36 82-120 148-183 (359)
206 2yhs_A FTSY, cell division pro 98.1 6.7E-07 2.3E-11 87.6 1.6 37 81-120 283-319 (503)
207 3ux8_A Excinuclease ABC, A sub 98.1 1E-06 3.4E-11 89.0 2.6 35 78-115 335-369 (670)
208 2qnr_A Septin-2, protein NEDD5 98.1 1.5E-06 5.1E-11 79.6 3.1 43 69-120 2-45 (301)
209 3kta_A Chromosome segregation 98.1 2.4E-06 8.1E-11 71.3 4.0 35 82-120 18-52 (182)
210 1lvg_A Guanylate kinase, GMP k 98.1 1.5E-06 5E-11 74.5 2.7 26 94-119 4-29 (198)
211 1lw7_A Transcriptional regulat 98.0 2E-06 6.8E-11 80.5 3.4 40 81-121 158-197 (365)
212 1cr0_A DNA primase/helicase; R 98.0 1.5E-06 5E-11 78.5 2.1 39 79-120 23-61 (296)
213 4aby_A DNA repair protein RECN 98.0 8.4E-07 2.9E-11 83.7 0.5 38 79-120 49-86 (415)
214 1qhl_A Protein (cell division 98.0 1.6E-07 5.5E-12 83.1 -4.3 57 65-138 9-65 (227)
215 4a74_A DNA repair and recombin 98.0 2.9E-06 1E-10 72.7 3.8 31 87-120 21-51 (231)
216 2o8b_B DNA mismatch repair pro 98.0 3.5E-06 1.2E-10 89.1 4.3 55 63-118 748-812 (1022)
217 1svm_A Large T antigen; AAA+ f 98.0 2.2E-06 7.5E-11 81.2 2.2 44 78-124 156-199 (377)
218 3exa_A TRNA delta(2)-isopenten 98.0 1.1E-05 3.8E-10 74.8 6.8 77 94-173 3-100 (322)
219 1ye8_A Protein THEP1, hypothet 98.0 3.1E-06 1.1E-10 71.7 2.8 25 96-120 2-26 (178)
220 2vf7_A UVRA2, excinuclease ABC 97.9 1.8E-06 6.1E-11 89.5 1.5 47 64-118 501-548 (842)
221 3sop_A Neuronal-specific septi 97.9 3.2E-06 1.1E-10 76.3 2.9 30 96-128 4-33 (270)
222 3ec2_A DNA replication protein 97.9 3.8E-06 1.3E-10 70.1 2.6 32 85-119 32-63 (180)
223 2ehv_A Hypothetical protein PH 97.9 5.6E-06 1.9E-10 71.8 3.8 45 65-115 6-51 (251)
224 1rj9_A FTSY, signal recognitio 97.9 2.3E-06 7.8E-11 78.7 1.3 27 94-120 102-128 (304)
225 2i3b_A HCR-ntpase, human cance 97.9 4.1E-06 1.4E-10 71.8 2.7 26 94-119 1-26 (189)
226 1wb9_A DNA mismatch repair pro 97.9 5.4E-06 1.8E-10 85.6 4.1 49 65-117 577-630 (800)
227 1u0l_A Probable GTPase ENGC; p 97.9 4E-06 1.4E-10 76.6 2.4 34 93-129 168-201 (301)
228 2oap_1 GSPE-2, type II secreti 97.8 3.3E-06 1.1E-10 83.0 1.4 40 78-120 247-286 (511)
229 3thx_B DNA mismatch repair pro 97.8 3.9E-06 1.3E-10 87.7 1.7 50 65-117 640-696 (918)
230 3jvv_A Twitching mobility prot 97.8 6E-06 2E-10 77.6 2.7 40 78-120 103-149 (356)
231 1dek_A Deoxynucleoside monopho 97.8 7.2E-05 2.5E-09 66.6 9.1 34 95-128 2-35 (241)
232 1w1w_A Structural maintenance 97.8 1.5E-05 5.2E-10 76.0 4.9 47 66-121 7-53 (430)
233 2w0m_A SSO2452; RECA, SSPF, un 97.8 9.8E-06 3.4E-10 69.2 3.1 39 78-119 9-48 (235)
234 1ewq_A DNA mismatch repair pro 97.8 1.1E-05 3.7E-10 82.9 3.7 48 65-118 550-600 (765)
235 3szr_A Interferon-induced GTP- 97.8 2.6E-06 8.8E-11 85.4 -1.0 56 65-128 10-77 (608)
236 3foz_A TRNA delta(2)-isopenten 97.7 2.7E-05 9.2E-10 72.0 5.5 78 94-173 10-107 (316)
237 3m6a_A ATP-dependent protease 97.7 2.3E-06 7.9E-11 84.5 -1.8 54 66-123 84-137 (543)
238 2ygr_A Uvrabc system protein A 97.7 9.3E-06 3.2E-10 85.2 2.6 43 64-114 646-688 (993)
239 2ewv_A Twitching motility prot 97.7 6.7E-06 2.3E-10 77.5 1.3 36 80-120 127-162 (372)
240 3e70_C DPA, signal recognition 97.7 8.1E-06 2.8E-10 75.9 1.5 27 94-120 129-155 (328)
241 2rcn_A Probable GTPase ENGC; Y 97.7 1E-05 3.6E-10 76.1 2.2 33 94-129 215-248 (358)
242 2yv5_A YJEQ protein; hydrolase 97.7 1.9E-05 6.5E-10 72.2 3.5 33 93-129 164-196 (302)
243 3eph_A TRNA isopentenyltransfe 97.7 3.7E-05 1.3E-09 73.5 5.4 77 94-173 2-99 (409)
244 3thx_A DNA mismatch repair pro 97.7 1.9E-05 6.4E-10 82.8 3.4 47 65-114 631-682 (934)
245 1t9h_A YLOQ, probable GTPase E 97.7 6.2E-06 2.1E-10 76.0 -0.2 38 86-129 168-205 (307)
246 2r6f_A Excinuclease ABC subuni 97.7 1.1E-05 3.9E-10 84.3 1.7 43 64-114 628-670 (972)
247 3ice_A Transcription terminati 97.6 1.9E-05 6.6E-10 75.2 2.6 51 65-118 133-198 (422)
248 2f1r_A Molybdopterin-guanine d 97.6 5.1E-06 1.7E-10 70.1 -1.4 35 95-129 3-37 (171)
249 2p67_A LAO/AO transport system 97.6 3.2E-06 1.1E-10 78.5 -3.1 51 65-118 30-80 (341)
250 2kjq_A DNAA-related protein; s 97.6 2.6E-05 8.8E-10 64.0 2.6 27 94-120 36-62 (149)
251 2o5v_A DNA replication and rep 97.6 3.2E-05 1.1E-09 72.7 3.5 36 79-118 15-50 (359)
252 2dhr_A FTSH; AAA+ protein, hex 97.6 9.1E-06 3.1E-10 79.7 -0.4 54 66-124 41-94 (499)
253 3k1j_A LON protease, ATP-depen 97.5 1.8E-05 6.1E-10 79.0 1.0 51 68-121 37-87 (604)
254 1e69_A Chromosome segregation 97.5 4.4E-05 1.5E-09 70.1 3.6 45 66-120 6-50 (322)
255 1lv7_A FTSH; alpha/beta domain 97.5 3.2E-05 1.1E-09 68.0 2.6 30 95-124 46-75 (257)
256 1ls1_A Signal recognition part 97.5 2.1E-05 7.3E-10 71.7 1.4 48 66-120 77-124 (295)
257 1zu4_A FTSY; GTPase, signal re 97.5 4.6E-05 1.6E-09 70.4 3.2 37 81-120 95-131 (320)
258 3cf0_A Transitional endoplasmi 97.5 8.4E-05 2.9E-09 67.4 4.5 44 87-133 45-90 (301)
259 1n0w_A DNA repair protein RAD5 97.4 9.2E-05 3.1E-09 63.8 3.8 28 87-117 20-47 (243)
260 2cvh_A DNA repair and recombin 97.4 7.2E-05 2.5E-09 63.5 3.0 34 80-116 8-42 (220)
261 3qf7_A RAD50; ABC-ATPase, ATPa 97.4 6.8E-05 2.3E-09 70.3 2.9 34 80-117 13-46 (365)
262 1sxj_C Activator 1 40 kDa subu 97.4 2E-05 6.7E-10 72.5 -0.8 49 69-120 22-72 (340)
263 1udx_A The GTP-binding protein 97.4 5.1E-05 1.8E-09 72.7 2.0 35 81-118 147-181 (416)
264 3pih_A Uvrabc system protein A 97.3 8.9E-05 3E-09 77.5 3.5 31 78-111 597-627 (916)
265 1vma_A Cell division protein F 97.3 9.8E-05 3.4E-09 67.9 3.3 35 83-120 96-130 (306)
266 1odf_A YGR205W, hypothetical 3 97.3 0.0001 3.5E-09 67.1 3.2 27 94-120 31-57 (290)
267 1nlf_A Regulatory protein REPA 97.2 0.00018 6.1E-09 64.3 3.8 28 88-118 27-54 (279)
268 1pzn_A RAD51, DNA repair and r 97.2 0.00014 4.8E-09 67.8 3.2 36 80-118 119-155 (349)
269 1ypw_A Transitional endoplasmi 97.2 0.00014 4.8E-09 75.1 3.4 36 86-124 233-268 (806)
270 1nij_A Hypothetical protein YJ 97.2 0.00014 4.7E-09 66.8 2.8 24 95-118 5-28 (318)
271 1oix_A RAS-related protein RAB 97.1 0.00026 9.1E-09 59.2 3.8 25 96-120 31-55 (191)
272 2ce7_A Cell division protein F 97.1 0.00016 5.4E-09 70.5 2.7 45 75-124 35-79 (476)
273 1g41_A Heat shock protein HSLU 97.1 0.0003 1E-08 67.9 4.5 49 94-142 50-100 (444)
274 3b9p_A CG5977-PA, isoform A; A 97.1 0.00027 9.4E-09 63.1 3.7 30 94-123 54-83 (297)
275 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00027 9.3E-09 57.8 3.4 24 95-118 24-47 (149)
276 3h4m_A Proteasome-activating n 97.1 0.00029 9.8E-09 62.5 3.7 31 94-124 51-81 (285)
277 2f9l_A RAB11B, member RAS onco 97.0 0.00032 1.1E-08 58.8 3.4 23 96-118 7-29 (199)
278 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.00035 1.2E-08 60.9 3.7 31 94-124 39-69 (262)
279 2px0_A Flagellar biosynthesis 97.0 0.00029 1E-08 64.2 3.2 26 94-119 105-130 (296)
280 2qmh_A HPR kinase/phosphorylas 97.0 0.00041 1.4E-08 60.3 3.9 44 80-128 24-67 (205)
281 1tf7_A KAIC; homohexamer, hexa 97.0 0.00029 1E-08 69.0 2.9 49 66-120 258-307 (525)
282 2ffh_A Protein (FFH); SRP54, s 97.0 0.00018 6.3E-09 69.1 1.4 46 68-120 79-124 (425)
283 3hws_A ATP-dependent CLP prote 97.0 0.00035 1.2E-08 64.8 3.2 33 94-126 51-83 (363)
284 2gj8_A MNME, tRNA modification 96.9 0.00049 1.7E-08 56.6 3.5 25 94-118 4-28 (172)
285 3t34_A Dynamin-related protein 96.9 0.00021 7.3E-09 66.3 1.4 44 68-117 11-57 (360)
286 3t15_A Ribulose bisphosphate c 96.9 0.00049 1.7E-08 62.2 3.6 30 95-124 37-66 (293)
287 1m2o_B GTP-binding protein SAR 96.9 0.00056 1.9E-08 57.1 3.5 35 79-117 12-46 (190)
288 2r62_A Cell division protease 96.8 0.00023 7.8E-09 62.7 0.8 29 96-124 46-74 (268)
289 4b4t_K 26S protease regulatory 96.8 0.0006 2.1E-08 65.5 3.5 32 94-125 206-237 (428)
290 4b4t_L 26S protease subunit RP 96.8 0.0006 2.1E-08 65.7 3.5 31 94-124 215-245 (437)
291 4b4t_M 26S protease regulatory 96.8 0.00061 2.1E-08 65.6 3.5 31 94-124 215-245 (434)
292 2dr3_A UPF0273 protein PH0284; 96.8 0.00077 2.6E-08 57.9 3.7 33 81-116 12-45 (247)
293 1um8_A ATP-dependent CLP prote 96.8 0.00064 2.2E-08 63.2 3.2 33 94-126 72-104 (376)
294 2wji_A Ferrous iron transport 96.7 0.00079 2.7E-08 54.7 3.3 24 95-118 4-27 (165)
295 3bos_A Putative DNA replicatio 96.7 0.00075 2.6E-08 57.4 3.3 26 94-119 52-77 (242)
296 4b4t_J 26S protease regulatory 96.7 0.00065 2.2E-08 64.8 3.0 31 94-124 182-212 (405)
297 3n70_A Transport activator; si 96.7 0.001 3.5E-08 53.5 3.8 25 94-118 24-48 (145)
298 1np6_A Molybdopterin-guanine d 96.7 0.00073 2.5E-08 57.0 3.0 26 94-119 6-31 (174)
299 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 0.00075 2.6E-08 64.1 3.4 24 94-117 20-43 (392)
300 1jbk_A CLPB protein; beta barr 96.7 0.00084 2.9E-08 54.5 3.2 25 94-118 43-67 (195)
301 1d2n_A N-ethylmaleimide-sensit 96.7 0.00087 3E-08 59.3 3.4 31 94-124 64-94 (272)
302 1ofh_A ATP-dependent HSL prote 96.7 0.00084 2.9E-08 59.7 3.3 30 94-123 50-79 (310)
303 1f6b_A SAR1; gtpases, N-termin 96.7 0.00046 1.6E-08 58.1 1.4 39 74-116 8-47 (198)
304 3lda_A DNA repair protein RAD5 96.7 0.00098 3.3E-08 63.4 3.7 26 87-115 174-199 (400)
305 3eie_A Vacuolar protein sortin 96.7 0.00093 3.2E-08 60.9 3.5 31 94-124 51-81 (322)
306 2p65_A Hypothetical protein PF 96.7 0.00073 2.5E-08 55.0 2.5 25 94-118 43-67 (187)
307 3qks_A DNA double-strand break 96.7 0.0011 3.8E-08 56.7 3.7 25 95-119 24-48 (203)
308 2vf7_A UVRA2, excinuclease ABC 96.6 0.00081 2.8E-08 69.7 3.3 29 80-111 25-53 (842)
309 4ad8_A DNA repair protein RECN 96.6 0.00036 1.2E-08 68.2 0.6 38 80-121 50-87 (517)
310 4fcw_A Chaperone protein CLPB; 96.6 0.00025 8.7E-09 63.5 -0.5 26 95-120 48-73 (311)
311 2zej_A Dardarin, leucine-rich 96.6 0.00091 3.1E-08 55.3 3.0 23 96-118 4-26 (184)
312 2www_A Methylmalonic aciduria 96.6 0.0009 3.1E-08 62.3 3.2 25 94-118 74-98 (349)
313 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.0011 3.7E-08 60.9 3.7 30 94-123 45-75 (322)
314 1j8m_F SRP54, signal recogniti 96.6 0.00038 1.3E-08 63.5 0.6 45 68-118 77-122 (297)
315 1sxj_E Activator 1 40 kDa subu 96.6 0.00081 2.8E-08 61.4 2.8 26 95-120 37-63 (354)
316 1l8q_A Chromosomal replication 96.6 0.00092 3.2E-08 60.7 3.0 36 94-129 37-77 (324)
317 2wjg_A FEOB, ferrous iron tran 96.6 0.0012 4.1E-08 54.2 3.4 24 94-117 7-30 (188)
318 3pih_A Uvrabc system protein A 96.5 0.00098 3.4E-08 69.7 3.1 30 79-111 12-41 (916)
319 2r44_A Uncharacterized protein 96.5 0.0003 1E-08 64.0 -0.7 41 80-123 35-75 (331)
320 4b4t_H 26S protease regulatory 96.5 0.001 3.4E-08 64.6 2.9 31 94-124 243-273 (467)
321 3d8b_A Fidgetin-like protein 1 96.5 0.0014 4.9E-08 60.8 3.8 31 94-124 117-147 (357)
322 2ygr_A Uvrabc system protein A 96.5 0.0011 3.7E-08 69.7 3.3 31 78-111 33-63 (993)
323 1ypw_A Transitional endoplasmi 96.5 0.00059 2E-08 70.4 1.3 37 85-124 505-541 (806)
324 2qby_A CDC6 homolog 1, cell di 96.5 0.0011 3.8E-08 60.4 3.0 25 94-118 45-69 (386)
325 2r6f_A Excinuclease ABC subuni 96.5 0.0011 3.8E-08 69.5 3.3 31 78-111 31-61 (972)
326 3qkt_A DNA double-strand break 96.5 0.0014 4.7E-08 60.5 3.6 23 95-117 24-46 (339)
327 2qp9_X Vacuolar protein sortin 96.5 0.0012 4E-08 61.4 3.1 31 94-124 84-114 (355)
328 4b4t_I 26S protease regulatory 96.5 0.0013 4.6E-08 63.2 3.5 31 94-124 216-246 (437)
329 3ch4_B Pmkase, phosphomevalona 96.5 0.0063 2.2E-07 52.7 7.4 108 94-204 11-144 (202)
330 1njg_A DNA polymerase III subu 96.5 0.00049 1.7E-08 57.9 0.3 26 95-120 46-71 (250)
331 2w58_A DNAI, primosome compone 96.5 0.0014 4.8E-08 55.0 3.2 24 95-118 55-78 (202)
332 1xjc_A MOBB protein homolog; s 96.5 0.0013 4.5E-08 55.3 3.0 25 95-119 5-29 (169)
333 1ega_A Protein (GTP-binding pr 96.5 0.0012 4.1E-08 60.0 2.9 24 94-117 8-31 (301)
334 3pfi_A Holliday junction ATP-d 96.4 0.0017 5.7E-08 59.1 3.6 31 95-125 56-86 (338)
335 2qag_A Septin-2, protein NEDD5 96.4 0.00034 1.2E-08 65.4 -1.1 44 65-117 17-60 (361)
336 3syl_A Protein CBBX; photosynt 96.4 0.0016 5.4E-08 58.3 3.2 25 94-118 67-91 (309)
337 3vfd_A Spastin; ATPase, microt 96.3 0.0024 8E-08 59.8 3.8 31 94-124 148-178 (389)
338 1sxj_D Activator 1 41 kDa subu 96.3 0.00094 3.2E-08 60.6 1.0 39 78-119 43-83 (353)
339 1fnn_A CDC6P, cell division co 96.3 0.0022 7.6E-08 58.7 3.5 24 96-119 46-69 (389)
340 3pvs_A Replication-associated 96.2 0.0022 7.6E-08 61.7 3.5 30 96-125 52-81 (447)
341 3lxx_A GTPase IMAP family memb 96.2 0.0025 8.5E-08 55.2 3.4 26 95-120 30-55 (239)
342 3co5_A Putative two-component 96.2 0.0014 4.7E-08 52.7 1.5 26 94-119 27-52 (143)
343 2c9o_A RUVB-like 1; hexameric 96.2 0.0025 8.5E-08 61.1 3.6 31 94-124 63-95 (456)
344 1z2a_A RAS-related protein RAB 96.2 0.0029 9.9E-08 50.4 3.4 22 96-117 7-28 (168)
345 3tqf_A HPR(Ser) kinase; transf 96.2 0.0038 1.3E-07 53.0 4.2 35 94-129 16-50 (181)
346 2v1u_A Cell division control p 96.2 0.0017 5.8E-08 59.3 2.1 25 94-118 44-68 (387)
347 2ce2_X GTPase HRAS; signaling 96.2 0.0031 1E-07 49.8 3.3 23 96-118 5-27 (166)
348 3hr8_A Protein RECA; alpha and 96.1 0.0031 1.1E-07 59.1 3.7 28 88-118 58-85 (356)
349 2zan_A Vacuolar protein sortin 96.1 0.0031 1.1E-07 60.4 3.7 36 94-129 167-205 (444)
350 2ged_A SR-beta, signal recogni 96.1 0.0032 1.1E-07 51.9 3.4 25 94-118 48-72 (193)
351 3uk6_A RUVB-like 2; hexameric 96.1 0.0028 9.5E-08 58.1 3.3 27 94-120 70-96 (368)
352 1kao_A RAP2A; GTP-binding prot 96.1 0.0033 1.1E-07 49.8 3.4 23 95-117 4-26 (167)
353 2dyk_A GTP-binding protein; GT 96.1 0.0034 1.2E-07 49.7 3.4 23 96-118 3-25 (161)
354 1u8z_A RAS-related protein RAL 96.1 0.0035 1.2E-07 49.7 3.4 23 95-117 5-27 (168)
355 2erx_A GTP-binding protein DI- 96.1 0.0035 1.2E-07 50.0 3.4 23 95-117 4-26 (172)
356 1ko7_A HPR kinase/phosphatase; 96.1 0.0045 1.5E-07 57.1 4.5 47 77-128 131-177 (314)
357 2nzj_A GTP-binding protein REM 96.1 0.0034 1.2E-07 50.4 3.3 22 96-117 6-27 (175)
358 3cf2_A TER ATPase, transitiona 96.1 0.0036 1.2E-07 64.6 4.1 32 94-125 238-269 (806)
359 3q72_A GTP-binding protein RAD 96.1 0.0029 1E-07 50.5 2.7 22 96-117 4-25 (166)
360 1hqc_A RUVB; extended AAA-ATPa 96.0 0.0023 7.9E-08 57.5 2.3 30 94-123 38-67 (324)
361 3q85_A GTP-binding protein REM 96.0 0.0037 1.3E-07 50.0 3.3 23 96-118 4-26 (169)
362 1sxj_A Activator 1 95 kDa subu 96.0 0.0036 1.2E-07 61.0 3.8 31 94-124 77-107 (516)
363 2chg_A Replication factor C sm 96.0 0.0031 1.1E-07 52.4 2.9 24 95-118 39-62 (226)
364 1ek0_A Protein (GTP-binding pr 96.0 0.0039 1.3E-07 49.6 3.4 23 96-118 5-27 (170)
365 1z0j_A RAB-22, RAS-related pro 96.0 0.004 1.4E-07 49.7 3.4 24 95-118 7-30 (170)
366 1g16_A RAS-related protein SEC 96.0 0.004 1.4E-07 49.7 3.3 22 96-117 5-26 (170)
367 1z08_A RAS-related protein RAB 96.0 0.004 1.4E-07 49.8 3.3 22 96-117 8-29 (170)
368 2orw_A Thymidine kinase; TMTK, 96.0 0.0038 1.3E-07 52.7 3.3 23 93-115 2-24 (184)
369 1ky3_A GTP-binding protein YPT 96.0 0.0041 1.4E-07 50.2 3.4 23 95-117 9-31 (182)
370 2qen_A Walker-type ATPase; unk 96.0 0.0012 4.2E-08 59.4 0.2 48 76-126 16-63 (350)
371 2z4s_A Chromosomal replication 96.0 0.0031 1E-07 60.4 3.0 25 94-118 130-154 (440)
372 1c1y_A RAS-related protein RAP 96.0 0.0043 1.5E-07 49.3 3.4 23 95-117 4-26 (167)
373 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0042 1.5E-07 50.1 3.4 22 96-117 9-30 (177)
374 3k53_A Ferrous iron transport 96.0 0.0043 1.5E-07 55.0 3.7 24 95-118 4-27 (271)
375 2qby_B CDC6 homolog 3, cell di 95.9 0.0041 1.4E-07 57.0 3.5 25 94-118 45-69 (384)
376 2fn4_A P23, RAS-related protei 95.9 0.0045 1.5E-07 49.9 3.3 23 95-117 10-32 (181)
377 3t1o_A Gliding protein MGLA; G 95.9 0.0052 1.8E-07 50.3 3.7 25 96-120 16-40 (198)
378 2lkc_A Translation initiation 95.9 0.0055 1.9E-07 49.5 3.7 24 94-117 8-31 (178)
379 1svi_A GTP-binding protein YSX 95.9 0.0046 1.6E-07 50.9 3.3 24 94-117 23-46 (195)
380 1r2q_A RAS-related protein RAB 95.9 0.005 1.7E-07 49.0 3.4 23 95-117 7-29 (170)
381 3pqc_A Probable GTP-binding pr 95.9 0.0047 1.6E-07 50.5 3.3 24 95-118 24-47 (195)
382 3tw8_B RAS-related protein RAB 95.9 0.0039 1.3E-07 50.3 2.8 23 95-117 10-32 (181)
383 3bc1_A RAS-related protein RAB 95.9 0.005 1.7E-07 50.1 3.4 23 95-117 12-34 (195)
384 4dsu_A GTPase KRAS, isoform 2B 95.8 0.0051 1.8E-07 50.0 3.4 23 96-118 6-28 (189)
385 3hu3_A Transitional endoplasmi 95.8 0.0049 1.7E-07 60.0 3.7 31 94-124 238-268 (489)
386 2zr9_A Protein RECA, recombina 95.8 0.0052 1.8E-07 57.2 3.8 28 87-117 57-84 (349)
387 2cxx_A Probable GTP-binding pr 95.8 0.0049 1.7E-07 50.3 3.2 22 96-117 3-24 (190)
388 2hxs_A RAB-26, RAS-related pro 95.8 0.0055 1.9E-07 49.4 3.5 23 95-117 7-29 (178)
389 3clv_A RAB5 protein, putative; 95.8 0.0053 1.8E-07 50.2 3.4 23 95-117 8-30 (208)
390 1r8s_A ADP-ribosylation factor 95.8 0.0056 1.9E-07 48.7 3.4 22 96-117 2-23 (164)
391 1mky_A Probable GTP-binding pr 95.8 0.0049 1.7E-07 58.8 3.5 24 95-118 181-204 (439)
392 1upt_A ARL1, ADP-ribosylation 95.8 0.0056 1.9E-07 48.9 3.4 24 94-117 7-30 (171)
393 2y8e_A RAB-protein 6, GH09086P 95.8 0.0056 1.9E-07 49.2 3.3 23 95-117 15-37 (179)
394 2oil_A CATX-8, RAS-related pro 95.8 0.0057 2E-07 50.4 3.4 22 96-117 27-48 (193)
395 1z0f_A RAB14, member RAS oncog 95.7 0.006 2E-07 49.1 3.4 24 95-118 16-39 (179)
396 2a9k_A RAS-related protein RAL 95.7 0.006 2E-07 49.4 3.4 24 95-118 19-42 (187)
397 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0019 6.6E-08 63.1 0.5 41 76-119 26-66 (500)
398 1fzq_A ADP-ribosylation factor 95.7 0.0047 1.6E-07 50.9 2.7 24 94-117 16-39 (181)
399 2dy1_A Elongation factor G; tr 95.7 0.0046 1.6E-07 62.3 3.2 32 86-120 4-35 (665)
400 3auy_A DNA double-strand break 95.7 0.0057 1.9E-07 57.0 3.5 31 82-116 17-47 (371)
401 2g6b_A RAS-related protein RAB 95.7 0.0063 2.1E-07 49.2 3.4 24 95-118 11-34 (180)
402 3con_A GTPase NRAS; structural 95.7 0.0062 2.1E-07 50.0 3.4 23 95-117 22-44 (190)
403 1nrj_B SR-beta, signal recogni 95.7 0.006 2.1E-07 51.4 3.4 25 94-118 12-36 (218)
404 2r6a_A DNAB helicase, replicat 95.7 0.0043 1.5E-07 59.5 2.7 37 79-118 191-227 (454)
405 2bjv_A PSP operon transcriptio 95.7 0.0067 2.3E-07 53.2 3.7 26 94-119 29-54 (265)
406 2bme_A RAB4A, RAS-related prot 95.7 0.0065 2.2E-07 49.5 3.3 24 95-118 11-34 (186)
407 3pxg_A Negative regulator of g 95.7 0.006 2E-07 58.8 3.5 25 94-118 201-225 (468)
408 2efe_B Small GTP-binding prote 95.6 0.0067 2.3E-07 49.0 3.3 23 95-117 13-35 (181)
409 3lxw_A GTPase IMAP family memb 95.6 0.0064 2.2E-07 53.4 3.4 25 95-119 22-46 (247)
410 1m7b_A RND3/RHOE small GTP-bin 95.6 0.0068 2.3E-07 49.7 3.3 23 95-117 8-30 (184)
411 3kl4_A SRP54, signal recogniti 95.6 0.0046 1.6E-07 59.4 2.6 25 94-118 97-121 (433)
412 3ihw_A Centg3; RAS, centaurin, 95.6 0.0071 2.4E-07 50.0 3.3 23 95-117 21-43 (184)
413 3b1v_A Ferrous iron uptake tra 95.6 0.0065 2.2E-07 54.5 3.3 23 95-117 4-26 (272)
414 2wsm_A Hydrogenase expression/ 95.6 0.0069 2.4E-07 51.2 3.3 25 94-118 30-54 (221)
415 2bov_A RAla, RAS-related prote 95.6 0.0074 2.5E-07 50.0 3.4 24 95-118 15-38 (206)
416 2qtf_A Protein HFLX, GTP-bindi 95.6 0.0064 2.2E-07 56.9 3.3 23 96-118 181-203 (364)
417 3kkq_A RAS-related protein M-R 95.6 0.0076 2.6E-07 49.0 3.4 23 95-117 19-41 (183)
418 1mh1_A RAC1; GTP-binding, GTPa 95.6 0.0077 2.6E-07 48.8 3.4 23 95-117 6-28 (186)
419 1vg8_A RAS-related protein RAB 95.6 0.0075 2.6E-07 50.1 3.4 24 95-118 9-32 (207)
420 1moz_A ARL1, ADP-ribosylation 95.6 0.0044 1.5E-07 50.3 1.9 23 94-116 18-40 (183)
421 3tkl_A RAS-related protein RAB 95.6 0.0077 2.6E-07 49.4 3.4 23 96-118 18-40 (196)
422 2qgz_A Helicase loader, putati 95.5 0.0068 2.3E-07 55.2 3.3 26 94-119 152-177 (308)
423 2fg5_A RAB-22B, RAS-related pr 95.5 0.0077 2.6E-07 49.8 3.3 24 95-118 24-47 (192)
424 2gf0_A GTP-binding protein DI- 95.5 0.0079 2.7E-07 49.5 3.3 24 94-117 8-31 (199)
425 2gf9_A RAS-related protein RAB 95.5 0.0081 2.8E-07 49.4 3.4 22 96-117 24-45 (189)
426 3t5g_A GTP-binding protein RHE 95.5 0.0085 2.9E-07 48.6 3.3 22 95-116 7-28 (181)
427 1ksh_A ARF-like protein 2; sma 95.5 0.0077 2.6E-07 49.2 3.1 25 94-118 18-42 (186)
428 2xtp_A GTPase IMAP family memb 95.4 0.008 2.7E-07 52.5 3.3 25 94-118 22-46 (260)
429 3dz8_A RAS-related protein RAB 95.4 0.0086 2.9E-07 49.4 3.3 23 96-118 25-47 (191)
430 1zbd_A Rabphilin-3A; G protein 95.4 0.0087 3E-07 49.7 3.4 22 96-117 10-31 (203)
431 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0067 2.3E-07 56.7 2.9 25 94-118 35-59 (392)
432 3oes_A GTPase rhebl1; small GT 95.4 0.0086 2.9E-07 49.9 3.3 25 94-118 24-48 (201)
433 3bwd_D RAC-like GTP-binding pr 95.4 0.0091 3.1E-07 48.3 3.4 24 94-117 8-31 (182)
434 1v5w_A DMC1, meiotic recombina 95.4 0.009 3.1E-07 55.2 3.7 28 87-117 118-145 (343)
435 2ohf_A Protein OLA1, GTP-bindi 95.4 0.0071 2.4E-07 57.5 3.0 24 94-117 22-45 (396)
436 1z06_A RAS-related protein RAB 95.4 0.0092 3.1E-07 49.0 3.4 23 95-117 21-43 (189)
437 3llm_A ATP-dependent RNA helic 95.4 0.0093 3.2E-07 51.6 3.5 22 94-115 76-97 (235)
438 1x3s_A RAS-related protein RAB 95.4 0.0096 3.3E-07 48.7 3.4 23 95-117 16-38 (195)
439 2bcg_Y Protein YP2, GTP-bindin 95.4 0.0094 3.2E-07 49.7 3.3 22 96-117 10-31 (206)
440 2a5j_A RAS-related protein RAB 95.4 0.0097 3.3E-07 49.1 3.4 22 96-117 23-44 (191)
441 3cbq_A GTP-binding protein REM 95.3 0.0064 2.2E-07 50.8 2.3 24 95-118 24-47 (195)
442 1zd9_A ADP-ribosylation factor 95.3 0.0099 3.4E-07 49.0 3.4 23 95-117 23-45 (188)
443 2atv_A RERG, RAS-like estrogen 95.3 0.0098 3.4E-07 49.3 3.4 24 94-117 28-51 (196)
444 1zj6_A ADP-ribosylation factor 95.3 0.0099 3.4E-07 48.8 3.4 23 94-116 16-38 (187)
445 1tue_A Replication protein E1; 95.3 0.007 2.4E-07 52.7 2.5 26 94-119 58-83 (212)
446 2cjw_A GTP-binding protein GEM 95.3 0.01 3.4E-07 49.5 3.4 22 96-117 8-29 (192)
447 2p5s_A RAS and EF-hand domain 95.3 0.01 3.4E-07 49.4 3.4 24 94-117 28-51 (199)
448 3iby_A Ferrous iron transport 95.3 0.0094 3.2E-07 52.8 3.4 22 96-117 3-24 (256)
449 3reg_A RHO-like small GTPase; 95.3 0.01 3.5E-07 49.0 3.4 24 95-118 24-47 (194)
450 2hf9_A Probable hydrogenase ni 95.3 0.0099 3.4E-07 50.4 3.3 25 94-118 38-62 (226)
451 2iwr_A Centaurin gamma 1; ANK 95.3 0.0075 2.6E-07 48.8 2.4 23 95-117 8-30 (178)
452 2h17_A ADP-ribosylation factor 95.3 0.0094 3.2E-07 48.7 3.0 24 94-117 21-44 (181)
453 2z43_A DNA repair and recombin 95.3 0.011 3.7E-07 54.1 3.7 28 87-117 103-130 (324)
454 3cph_A RAS-related protein SEC 95.3 0.011 3.6E-07 49.4 3.4 24 94-117 20-43 (213)
455 2o52_A RAS-related protein RAB 95.3 0.01 3.5E-07 49.6 3.3 22 96-117 27-48 (200)
456 2ew1_A RAS-related protein RAB 95.3 0.01 3.6E-07 50.0 3.3 22 96-117 28-49 (201)
457 3c5c_A RAS-like protein 12; GD 95.2 0.011 3.8E-07 48.8 3.4 23 95-117 22-44 (187)
458 2fv8_A H6, RHO-related GTP-bin 95.2 0.011 3.8E-07 49.6 3.3 23 95-117 26-48 (207)
459 1gwn_A RHO-related GTP-binding 95.2 0.011 3.8E-07 49.9 3.3 23 95-117 29-51 (205)
460 4bas_A ADP-ribosylation factor 95.2 0.0094 3.2E-07 49.0 2.8 24 94-117 17-40 (199)
461 2fh5_B SR-beta, signal recogni 95.2 0.011 3.9E-07 49.5 3.4 25 94-118 7-31 (214)
462 2il1_A RAB12; G-protein, GDP, 95.2 0.0093 3.2E-07 49.4 2.8 22 96-117 28-49 (192)
463 3llu_A RAS-related GTP-binding 95.2 0.012 4.1E-07 48.9 3.4 25 95-119 21-45 (196)
464 2h57_A ADP-ribosylation factor 95.2 0.008 2.7E-07 49.5 2.3 25 94-118 21-45 (190)
465 2q3h_A RAS homolog gene family 95.1 0.012 4.1E-07 48.7 3.3 24 94-117 20-43 (201)
466 2f7s_A C25KG, RAS-related prot 95.1 0.012 4E-07 49.5 3.3 22 96-117 27-48 (217)
467 2qu8_A Putative nucleolar GTP- 95.1 0.011 3.8E-07 50.5 3.1 24 94-117 29-52 (228)
468 2gco_A H9, RHO-related GTP-bin 95.1 0.013 4.4E-07 48.9 3.3 23 96-118 27-49 (201)
469 3a1s_A Iron(II) transport prot 95.1 0.012 4.2E-07 52.0 3.4 23 95-117 6-28 (258)
470 1g8p_A Magnesium-chelatase 38 95.1 0.0068 2.3E-07 54.9 1.7 26 94-119 45-70 (350)
471 2fu5_C RAS-related protein RAB 95.0 0.0078 2.7E-07 48.9 1.8 22 95-116 9-30 (183)
472 2j1l_A RHO-related GTP-binding 95.0 0.013 4.5E-07 49.5 3.2 22 95-116 35-56 (214)
473 3i8s_A Ferrous iron transport 95.0 0.013 4.4E-07 52.2 3.3 24 95-118 4-27 (274)
474 1sky_E F1-ATPase, F1-ATP synth 95.0 0.011 3.7E-07 57.4 3.0 27 92-118 149-175 (473)
475 2atx_A Small GTP binding prote 95.0 0.014 4.8E-07 48.0 3.3 22 96-117 20-41 (194)
476 2zts_A Putative uncharacterize 95.0 0.016 5.5E-07 49.5 3.8 25 88-115 27-51 (251)
477 2e87_A Hypothetical protein PH 95.0 0.011 3.7E-07 54.8 2.8 25 94-118 167-191 (357)
478 2vhj_A Ntpase P4, P4; non- hyd 95.0 0.014 4.8E-07 54.1 3.5 36 87-125 119-156 (331)
479 2v3c_C SRP54, signal recogniti 95.0 0.0067 2.3E-07 58.2 1.3 33 94-126 99-136 (432)
480 3pxi_A Negative regulator of g 94.9 0.013 4.5E-07 59.6 3.5 25 94-118 201-225 (758)
481 2b6h_A ADP-ribosylation factor 94.9 0.012 4.1E-07 48.9 2.8 23 94-116 29-51 (192)
482 3cf2_A TER ATPase, transitiona 94.9 0.011 3.8E-07 60.9 3.0 36 94-129 511-548 (806)
483 3t5d_A Septin-7; GTP-binding p 94.9 0.012 4E-07 52.3 2.8 22 96-117 10-31 (274)
484 3bh0_A DNAB-like replicative h 94.9 0.011 3.9E-07 53.8 2.7 35 80-117 57-91 (315)
485 3u61_B DNA polymerase accessor 94.9 0.0098 3.4E-07 53.6 2.2 29 96-124 50-78 (324)
486 1wf3_A GTP-binding protein; GT 94.9 0.015 5E-07 52.9 3.4 23 95-117 8-30 (301)
487 4dhe_A Probable GTP-binding pr 94.9 0.0067 2.3E-07 51.2 1.1 25 94-118 29-53 (223)
488 1jwy_B Dynamin A GTPase domain 94.9 0.014 4.9E-07 52.2 3.3 25 94-118 24-48 (315)
489 2dby_A GTP-binding protein; GD 94.9 0.013 4.4E-07 55.0 3.1 23 96-118 3-25 (368)
490 1jr3_A DNA polymerase III subu 94.9 0.015 5.2E-07 53.0 3.4 25 96-120 40-64 (373)
491 3te6_A Regulatory protein SIR3 94.9 0.0095 3.2E-07 54.9 2.0 25 94-118 45-69 (318)
492 1p6x_A Thymidine kinase; P-loo 94.9 0.011 3.9E-07 54.8 2.6 27 94-120 7-33 (334)
493 2b8t_A Thymidine kinase; deoxy 94.9 0.017 6E-07 50.4 3.6 24 94-117 12-35 (223)
494 4gzl_A RAS-related C3 botulinu 94.8 0.016 5.6E-07 48.5 3.3 23 94-116 30-52 (204)
495 2hup_A RAS-related protein RAB 94.8 0.016 5.6E-07 48.4 3.3 22 96-117 31-52 (201)
496 2i1q_A DNA repair and recombin 94.8 0.018 6E-07 52.3 3.7 27 87-116 94-120 (322)
497 2ius_A DNA translocase FTSK; n 94.8 0.012 4.1E-07 57.7 2.7 31 83-116 159-189 (512)
498 1jal_A YCHF protein; nucleotid 94.8 0.017 5.9E-07 54.2 3.6 24 94-117 2-25 (363)
499 3iev_A GTP-binding protein ERA 94.7 0.017 5.8E-07 52.4 3.4 23 95-117 11-33 (308)
500 1xx6_A Thymidine kinase; NESG, 94.7 0.02 6.9E-07 48.7 3.7 25 94-118 8-32 (191)
No 1
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=100.00 E-value=1.9e-39 Score=293.39 Aligned_cols=222 Identities=51% Similarity=0.829 Sum_probs=179.5
Q ss_pred ccEEEcce-EEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 64 HDVESGTF-CDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 64 ~~l~~~~l-~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
++++++|+ +++| ++..+|+++||++.+++.|++|+|+|+|||||||++++|++.+++.|+|+|.+++....|.++.++
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i 95 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEI 95 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHH
Confidence 47999999 9999 778899999999998888999999999999999999999999999999999999887669999999
Q ss_pred hhhhchhhhhhhHHHHHHHhhcC-CCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCC-CC
Q 023118 142 FKESGEAYFREYESKALQKLSLV-PQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDY-DS 219 (287)
Q Consensus 142 ~~~~g~~~fr~~e~~~l~~l~~~-~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~-~~ 219 (287)
|...|+..||..|.++++++... .+.|+++|||++.++.++..++.+++|||++|++++++|+..++...||++.. ..
T Consensus 96 ~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~ 175 (250)
T 3nwj_A 96 FEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDES 175 (250)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC--------------
T ss_pred HHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCc
Confidence 99999999999999999988765 68899999999999999999988999999999999999998654457998875 23
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhc
Q 023118 220 ADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285 (287)
Q Consensus 220 ~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~ 285 (287)
.+.+.+.++.+.+++++|.|+|+.+|++|++++++.+.++|||++++|++++++|++.+..+++++
T Consensus 176 ~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~ 241 (250)
T 3nwj_A 176 GDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKE 241 (250)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 333444567899999999999999999999999999999999999999999999999999988754
No 2
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=8.8e-31 Score=226.56 Aligned_cols=185 Identities=30% Similarity=0.416 Sum_probs=154.1
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA 157 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~ 157 (287)
..+++++||++.+ |++|+|+||+||||||+++.|++.+++.|+|.|.+++... |.++.++|...|+..||..+.++
T Consensus 12 ~~~~~~~~~~~~~---~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~-g~~i~~~~~~~~~~~~~~~e~~~ 87 (199)
T 3vaa_A 12 DLGTENLYFQSNA---MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERF-HKTVGELFTERGEAGFRELERNM 87 (199)
T ss_dssp ------------C---CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCceeEecCC---CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHh-CCcHHHHHHhcChHHHHHHHHHH
Confidence 4589999999999 9999999999999999999999999999999999998887 99999999999999999999999
Q ss_pred HHHhhcCCCeEEecCCceEeccccHHhhcC-CcEEEEecCHHHHHHHHh-hcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 158 LQKLSLVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIA-AVGTDSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 158 l~~l~~~~~~via~ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~-~~~~~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
++.+......|+++|||.+..+.++..+.+ +.+|||++|++++.+|+. .+ ..||++...+.+ +..+.+.++++
T Consensus 88 l~~l~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~--~~Rp~~~~~~~~---~~~~~i~~~~~ 162 (199)
T 3vaa_A 88 LHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAK--QQRPILQGKEDD---ELMDFIIQALE 162 (199)
T ss_dssp HHHHTTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTG--GGCGGGTTCCHH---HHHHHHHHHHH
T ss_pred HHHHhhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCC--CCCCCcCCCChh---hHHHHHHHHHH
Confidence 999887778899999999999998888865 899999999999999998 44 358887654322 23467899999
Q ss_pred HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+|.|.|+.+|++| ||++++|++++++|++.++++++
T Consensus 163 ~r~~~y~~ad~~I------------dt~~~s~ee~~~~I~~~l~~~l~ 198 (199)
T 3vaa_A 163 KRAPFYTQAQYIF------------NADELEDRWQIESSVQRLQELLE 198 (199)
T ss_dssp HHHHHHTTSSEEE------------ECCCCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCEEE------------ECCCCCHHHHHHHHHHHHHHHhc
Confidence 9999999888875 89999999999999999998874
No 3
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.95 E-value=1e-27 Score=203.50 Aligned_cols=171 Identities=31% Similarity=0.503 Sum_probs=148.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
+..|+|+||+||||||+++.|+..+++.|+|+|.++++.. |.++.++|...|+..||..+.+++..+......++++||
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg 83 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRT-GADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG 83 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHc-CCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence 5789999999999999999999999999999999998887 999999999999999999999999998877788999999
Q ss_pred ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118 174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL 251 (287)
Q Consensus 174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~ 251 (287)
|++..+.+++.|+. +.+|||++|++++.+|+.......||++... ...+.+.+++.+|.|.|+. +|++|
T Consensus 84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~------~~~~~l~~~~~~r~~~y~~~ad~~I--- 154 (185)
T 3trf_A 84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKN------NSKEKLQQLNEIRKPLYQAMADLVY--- 154 (185)
T ss_dssp TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCH------HHHHHHHHHHHHHHHHHHHHCSEEE---
T ss_pred ceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCC------CHHHHHHHHHHHHHHHHhhcCCEEE---
Confidence 99999988888875 8999999999999999943333468877531 1236789999999999987 88876
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 252 NLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
||++++|++++++|++.+..++.
T Consensus 155 ---------dt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 155 ---------PTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp ---------ECTTCCHHHHHHHHHHHSCC---
T ss_pred ---------ECCCCCHHHHHHHHHHHHHHHhh
Confidence 88989999999999999877654
No 4
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.92 E-value=3.7e-25 Score=185.51 Aligned_cols=167 Identities=32% Similarity=0.485 Sum_probs=131.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
|..|+|+|||||||||++++|++.+++.|+|+|.++.+.. |.++..+|...|+..|+..+..++..+....+.++++|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~-~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~ 82 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT-GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG 82 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh-CcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence 6789999999999999999999999999999999988776 888888888889999998888888888776777888888
Q ss_pred ceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEecc
Q 023118 174 GAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLL 251 (287)
Q Consensus 174 G~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~ 251 (287)
|.+..+.+++.++. +++|||++|++.+.+|+..+. .||++...+.. .+.+..++.+|.|.|.. +|++
T Consensus 83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~--~r~~~~~~~~~-----~~~~~~~~~~r~~~~~~~a~~~---- 151 (173)
T 1kag_A 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK--KRPLLHVETPP-----REVLEALANERNPLYEEIADVT---- 151 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC--------CCSSSSCCC-----HHHHHHHHHHHHHHHHHHCSEE----
T ss_pred eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCC--CCCCCCCCCch-----HHHHHHHHHHHHHHHHhhCCEE----
Confidence 87777777777765 899999999999999998753 47776532210 25678889999999986 7765
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 252 NLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 252 ~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
|||++.++++++++|.+.+.+
T Consensus 152 --------id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 152 --------IRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp --------C-----CHHHHHHHHHHHHC-
T ss_pred --------EECCCCCHHHHHHHHHHHHHh
Confidence 488888999999999988754
No 5
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.91 E-value=3.9e-24 Score=180.55 Aligned_cols=160 Identities=28% Similarity=0.442 Sum_probs=134.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG 174 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG 174 (287)
.+|+|+|++||||||+++.|+..++++|+|+|.++++.. |.++.++|...|+..||..+..+++.+......|+++|+|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKF-NQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHH-TSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHc-CCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 369999999999999999999999999999999998876 8999998888899999999888888887667788999998
Q ss_pred eEeccccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccc
Q 023118 175 AVVRPLNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLN 252 (287)
Q Consensus 175 ~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~ 252 (287)
.+.. .+ |+ .+.+|||++|++.+.+|+..+....||.... .+.+.+.+.+|.|.|.. ++++|
T Consensus 84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~---------~~~i~~~~~~r~~~y~~~~~~~I---- 146 (175)
T 1via_A 84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYD---------EIKAKKLYNERLSKYEQKANFIL---- 146 (175)
T ss_dssp GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCC---------HHHHHHHHHHHHHHHHHHCSEEE----
T ss_pred Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCccc---------HHHHHHHHHHHHHHHHhcCCEEE----
Confidence 8876 44 44 3899999999999999987652124665431 25688899999999976 77664
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 253 LAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 253 ~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
||++++|++++++|++.+..
T Consensus 147 --------dt~~~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 147 --------NIENKNIDELLSEIKKVIKE 166 (175)
T ss_dssp --------ECTTCCHHHHHHHHHHHHC-
T ss_pred --------ECCCCCHHHHHHHHHHHHHh
Confidence 89989999999999988753
No 6
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.91 E-value=1.3e-23 Score=175.92 Aligned_cols=158 Identities=31% Similarity=0.506 Sum_probs=127.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCe-EEecC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQ-VVATG 172 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~-via~g 172 (287)
.++|+|+|++||||||+++.|+..++++|+|+|.++++.. |.++.+++...|+..|+..+.+++..++...+. |+++|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~g 85 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV-GLSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVISTG 85 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEECC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh-CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 5789999999999999999999999999999999998887 899999988889999999998888888766677 88888
Q ss_pred CceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEec
Q 023118 173 GGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSL 250 (287)
Q Consensus 173 gG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~ 250 (287)
+|.+.. .+ |+. +.+|||++|++.+.+|+..+....||... + . +++.+.+.+|.+.|.. +|++|
T Consensus 86 ~g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~----~-~----~~~~~~~~~r~~~~~~~a~~~I-- 150 (168)
T 1zuh_A 86 GGIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLN----N-L----TQAKELFEKRQALYEKNASFII-- 150 (168)
T ss_dssp GGGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CC----T-T----HHHHHHHHHHHHHHHHTCSEEE--
T ss_pred CCEech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCcc----C-H----HHHHHHHHHHHHHHHHHCCEEE--
Confidence 887766 33 443 78999999999999999765312466543 1 1 4577888899999987 78775
Q ss_pred cccccccccccCCCCCHHHHHHHHHHHH
Q 023118 251 LNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 251 ~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
|++. ++++++++|.+.+
T Consensus 151 ----------d~~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 151 ----------DARG-GLNNSLKQVLQFI 167 (168)
T ss_dssp ----------EGGG-CHHHHHHHHHHC-
T ss_pred ----------ECCC-CHHHHHHHHHHHh
Confidence 7887 9999999998754
No 7
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.91 E-value=1.1e-23 Score=178.66 Aligned_cols=166 Identities=30% Similarity=0.398 Sum_probs=138.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
+.+|+|+|++||||||+++.|+..++++|+|+|.++++.. |.++.++|...|+..|+..+..+++++......|+.+|+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~-g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~ 80 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT-GRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH-SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence 3569999999999999999999999999999999998887 888888888889999999888888887665677889999
Q ss_pred ceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccc
Q 023118 174 GAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYAN-ADATVSLLN 252 (287)
Q Consensus 174 G~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~ 252 (287)
|+++++.++..+..+.+|||++|++.+.+|+..+. .||+.... +. .+.+..++..|.+.|.. +|++|
T Consensus 81 ~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~--~r~~~~~~--~~----~~~i~~~~~~r~~~~~~~~~~~I---- 148 (184)
T 2iyv_A 81 GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNT--VRPLLAGP--DR----AEKYRALMAKRAPLYRRVATMRV---- 148 (184)
T ss_dssp TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCC--CCSSTTSC--CH----HHHHHHHHHHHHHHHHHHCSEEE----
T ss_pred cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCC--CCCCccCC--CH----HHHHHHHHHHHHHHHhccCCEEE----
Confidence 98888777877766799999999999999998653 46765432 11 25678888899999976 77765
Q ss_pred cccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 253 LAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 253 ~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
|++..++++++++|++.+..
T Consensus 149 --------dt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 149 --------DTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp --------ECSSSCHHHHHHHHHTTSCC
T ss_pred --------ECCCCCHHHHHHHHHHHHhh
Confidence 88888999999999887653
No 8
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.88 E-value=3e-22 Score=167.53 Aligned_cols=164 Identities=35% Similarity=0.529 Sum_probs=135.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGG 174 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG 174 (287)
..|+|+|++||||||+++.|+..++++|+|+|.++.+.. |.++.+++...|+..|+..+..+++.+. ....|+.+|+|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~ 80 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTS-GMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG 80 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHh-CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc
Confidence 479999999999999999999999999999999998876 8888888877888899988888888877 55678888988
Q ss_pred eEeccccHHhhcC-CcEEEEecCHHHHHHHHh--hcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEecc
Q 023118 175 AVVRPLNWRFMRQ-GITVFLNVPLDALARRIA--AVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLL 251 (287)
Q Consensus 175 ~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~--~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~ 251 (287)
.+..+.++..|+. +.+|||++|++.+.+|+. .+. ..||.... + ...+++.+.+..|.+.|..+|++|
T Consensus 81 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~-~~r~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~I--- 150 (173)
T 1e6c_A 81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQA-HQRPTLTG---R---PIAEEMEAVLREREALYQDVAHYV--- 150 (173)
T ss_dssp GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCS-CCCCCTTH---H---HHHHHHHHHHHHHHHHHHHHCSEE---
T ss_pred EEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCC-CCCCcCCC---C---CHHHHHHHHHHHHHHHHHhCcEEE---
Confidence 8887777777764 899999999999999998 662 23665431 1 224568888899999998777765
Q ss_pred ccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 252 NLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 252 ~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
|+++.++++++++|.+.+.
T Consensus 151 ---------d~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 151 ---------VDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ---------EETTSCHHHHHHHHHHHTT
T ss_pred ---------ECCCCCHHHHHHHHHHHhc
Confidence 7888899999999988764
No 9
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.86 E-value=3.6e-21 Score=160.37 Aligned_cols=161 Identities=35% Similarity=0.589 Sum_probs=130.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCCce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~ 175 (287)
.|+|+|++||||||+++.|+..++++|+|+|.+..... |..+.+++...|+..|+..+..++..+......|+++|+|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~ 80 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE-GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGL 80 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH-TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc-CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCE
Confidence 68999999999999999999999999999999998887 88999888888989998888888888875567788888777
Q ss_pred EeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccc
Q 023118 176 VVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLA 254 (287)
Q Consensus 176 v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a 254 (287)
+..+.++..+++ +.+|||++|++.+.+|+..+. .||... +.. +.+.+.|.++.+.|..+|++
T Consensus 81 ~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~--~r~~~~----~~~----~~i~~~~~~~~~~~~~~~~~------- 143 (168)
T 2pt5_A 81 GANEEALNFMKSRGTTVFIDIPFEVFLERCKDSK--ERPLLK----RPL----DEIKNLFEERRKIYSKADIK------- 143 (168)
T ss_dssp HTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTT--CCBGGG----SCG----GGTHHHHHHHHHHHTTSSEE-------
T ss_pred eCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCC--CCCCCc----chH----HHHHHHHHHHHHHHHhCCEE-------
Confidence 766667777764 799999999999999987653 466543 111 34667778888888767665
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHH
Q 023118 255 ACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 255 ~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
| ++..++++++++|.+.+.+
T Consensus 144 -----i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 144 -----V-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp -----E-ECSSCHHHHHHHHHHHHHT
T ss_pred -----E-CCCCCHHHHHHHHHHHHHh
Confidence 4 4557999999999988764
No 10
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.83 E-value=4.2e-20 Score=161.08 Aligned_cols=169 Identities=12% Similarity=0.081 Sum_probs=113.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhh--hh------------------
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAY--FR------------------ 151 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~--fr------------------ 151 (287)
..+|+|.|++||||||+++.||..|+++|+| +.+++... .|.++ +.|...++.. |+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSK-EVLERFDEKPMNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCH-HHHHHHhhhchhHHHHHhccccccccccHHHH
Confidence 4589999999999999999999999999999 77765432 36664 4455555543 33
Q ss_pred hhHHHHHHHhh--cCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHH
Q 023118 152 EYESKALQKLS--LVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTA 229 (287)
Q Consensus 152 ~~e~~~l~~l~--~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~ 229 (287)
..+.+++++++ ...++|+...+|.+..+.+ ..+++|||++|++.+++|+..+. .+ ++.++.+.
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~--~~---------~~~~~~~~ 148 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMERE--GV---------DEKTALNM 148 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHH--TC---------CHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHh--CC---------CHHHHHHH
Confidence 46788899998 7677777653443333332 23689999999999999997542 11 12345678
Q ss_pred HHHHHHHHHhhhhhC-CeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 230 LSALSKERSEAYANA-DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 230 l~~l~~~R~~~Y~~a-d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+.++.++|.++|+.+ +. +-.+.+..+.+|||+.++++++++.|++.++..
T Consensus 149 i~~~d~~R~~~y~~~~~~--~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 149 MKKMDKMRKVYHNFYCES--KWGDSRTYDICIKIGKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHHHHHHHHCSS--CTTBGGGCSEEEEESSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCC--CCCCcccCCEEEECCCCCHHHHHHHHHHHHHHh
Confidence 899999999999863 21 122333344457999999999999999998753
No 11
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.80 E-value=3e-19 Score=158.51 Aligned_cols=169 Identities=17% Similarity=0.174 Sum_probs=113.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhhhhhchh------------------------
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIFKESGEA------------------------ 148 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~~~~g~~------------------------ 148 (287)
..+|+|.|++||||||+++.||..++++|+|.|.+.+... .|.+... |...++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~-~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQF-FRLADEKAGNNLLYRLGGGRKIDLHSKPSPN 92 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHH-HHHHHhhccccHHHHHhcccccccccccccc
Confidence 3589999999999999999999999999999665432221 3555432 2222221
Q ss_pred -------hhhhhHHHHHHHhhcCCCeEEe-cCCceEec--cccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCC
Q 023118 149 -------YFREYESKALQKLSLVPQQVVA-TGGGAVVR--PLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYD 218 (287)
Q Consensus 149 -------~fr~~e~~~l~~l~~~~~~via-~ggG~v~~--~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~ 218 (287)
..+..+.+++++++...++|+. +|||.|++ +.+ .++++|||++|++.+++|+..+. .+|.
T Consensus 93 ~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~--~~~~---- 162 (223)
T 3hdt_A 93 DKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVD--CIDE---- 162 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHH--TCCH----
T ss_pred cccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHHHhc--CCCH----
Confidence 1123456788888876777776 78887763 333 23789999999999999997642 2332
Q ss_pred CcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 219 SADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 219 ~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.++.+.+.+++++|.++|+. .+. +-.+.+..+.+|||+.++++++++.|++.++.
T Consensus 163 -----~~a~~~I~~~d~~R~~~Y~~ytg~--~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 163 -----ERAKRRIKKIEKERKEYYKYFTGS--EWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHSS--CTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHcCC--CCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999983 111 11122222233699999999999999999875
No 12
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.76 E-value=7.9e-19 Score=149.71 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=107.1
Q ss_pred ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc-cCCccccchhHHHHHhCCCchhhhhhhhchhhhh--hhHHHHHH
Q 023118 83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA-LDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFR--EYESKALQ 159 (287)
Q Consensus 83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~-l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr--~~e~~~l~ 159 (287)
++|+...+ +..|+|+|++||||||+++.|+.. ++++|+|+|.++++.. +.+.+.......|+ ..+..+++
T Consensus 2 ~~~~~~~~---~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~~~ 74 (184)
T 1y63_A 2 PGSMEQPK---GINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENH----FYTEYDTELDTHIIEEKDEDRLLD 74 (184)
T ss_dssp ----CCCS---SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTT----CSCC------CCCCCHHHHHHHHH
T ss_pred CcCcCCCC---CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhh----hhhhHHHHhhhcccCCCCHHHHHH
Confidence 46777777 899999999999999999999999 7999999999986641 11111111222232 23333344
Q ss_pred HhhcCCCeEEecCCceEeccccHHhhc---CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 160 KLSLVPQQVVATGGGAVVRPLNWRFMR---QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 160 ~l~~~~~~via~ggG~v~~~~~~~~L~---~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
.+.. ++.++||.+....++..+. .+.+|||++|++++.+|+..|+ ..+|.+.. .. ..+.+..++.+
T Consensus 75 ~l~~----~~~~~g~~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~-~~~~~~~~----~~--~~q~~~~l~~~ 143 (184)
T 1y63_A 75 FMEP----IMVSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQ-YSEAKRAE----NM--EAEIQCICEEE 143 (184)
T ss_dssp HHHH----HHTSSSEEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTT-CCHHHHHH----HH--HHHHTTHHHHH
T ss_pred HHHH----HHhccCCEEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCC-CChhhhHh----hH--HHHHHHHHHHH
Confidence 3321 2212345555555555554 2689999999999999999874 24554321 00 01125666889
Q ss_pred HHhhhhhCCeEEeccccccccccccCCCCCHHHH---HHHHHHHHHHHhh
Q 023118 237 RSEAYANADATVSLLNLAACIGLKDVLDITPTTI---AMEVLVQAQKYLN 283 (287)
Q Consensus 237 R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~ev---a~~i~~~i~~~l~ 283 (287)
|.+.|. +|++| ||++.+++++ +.+|++.++.+..
T Consensus 144 ~~~~y~-~~~vi------------~~n~~~~~~~~~~v~~i~~~l~~~~~ 180 (184)
T 1y63_A 144 ARDAYE-DDIVL------------VRENDTLEQMAATVEEIRERVEVLKV 180 (184)
T ss_dssp HHHHSC-GGGEE------------EEECSSHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhc-cCcEE------------ECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999997 56654 6666799999 7777777665543
No 13
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.75 E-value=1.5e-17 Score=143.43 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=109.9
Q ss_pred eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHH
Q 023118 86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQK 160 (287)
Q Consensus 86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~ 160 (287)
+...+ |++|+|+|||||||||+++.|++.+|..++|+|.+. .....|..+.+. .....++..+..+...
T Consensus 24 m~~~~---g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~ 97 (200)
T 4eun_A 24 MTGEP---TRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDE---DRWPWLRSLAEWMDAR 97 (200)
T ss_dssp ----C---CCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHH---HHHHHHHHHHHHHHHH
T ss_pred hcCCC---CcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCc---ccccHHHHHHHHHHHH
Confidence 34456 899999999999999999999999999999999873 222235444332 2334455555555554
Q ss_pred hhcCCCeEEecCCceEeccccHHhhcC----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 161 LSLVPQQVVATGGGAVVRPLNWRFMRQ----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 161 l~~~~~~via~ggG~v~~~~~~~~L~~----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
+......|+.++. ..+..++.+.. ..+|||++|++++.+|+..|+.+..+ . +.+...++.
T Consensus 98 ~~~g~~viid~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~------~-------~~l~~~~~~ 161 (200)
T 4eun_A 98 ADAGVSTIITCSA---LKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMP------A-------SLLQSQLAT 161 (200)
T ss_dssp HHTTCCEEEEECC---CCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSC------G-------GGHHHHHHH
T ss_pred HhcCCCEEEEchh---hhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCC------H-------HHHHHHHHH
Confidence 4444455666542 23555555653 47899999999999999876432111 1 336677888
Q ss_pred HHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 237 RSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 237 R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+++.|.. ++++ ||++. ++++++++|.+.+...
T Consensus 162 ~~~~~~~~~~~~------------Id~~~-~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 162 LEALEPDESGIV------------LDLRQ-PPEQLIERALTWLDIA 194 (200)
T ss_dssp CCCCCTTSCEEE------------EETTS-CHHHHHHHHHHHHCCC
T ss_pred hCCCCCCCCeEE------------EECCC-CHHHHHHHHHHHHHhc
Confidence 8999986 5655 47865 9999999999988643
No 14
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.75 E-value=5.4e-18 Score=152.04 Aligned_cols=169 Identities=18% Similarity=0.203 Sum_probs=101.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhh------hhh-------hh---------c
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQ------IFK-------ES---------G 146 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~------~~~-------~~---------g 146 (287)
|.+|+|+||+||||||++++|+..|++.|+|+|.++... ..|.++.+ +.. .. +
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEG 106 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECC
Confidence 899999999999999999999999999999999997332 24665532 100 00 0
Q ss_pred ---hhhhhhhHHH-HHHHhhc---------CCCeEEecCCceEeccccHHh--hcC-CcEEEEecCHHHHHHHHhhcCCC
Q 023118 147 ---EAYFREYESK-ALQKLSL---------VPQQVVATGGGAVVRPLNWRF--MRQ-GITVFLNVPLDALARRIAAVGTD 210 (287)
Q Consensus 147 ---~~~fr~~e~~-~l~~l~~---------~~~~via~ggG~v~~~~~~~~--L~~-g~~I~L~~~~e~l~~Ri~~~~~~ 210 (287)
.+..+..+.. .+..++. ..+..+++++|+|+...+... +.. +++|||++|++++++|+.....
T Consensus 107 ~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~~~l~- 185 (252)
T 4e22_A 107 EDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQLQ- 185 (252)
T ss_dssp EECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHHHHHH-
T ss_pred eehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHHHHHH-
Confidence 0111111110 0111110 001124556777777665543 233 7899999999999999753100
Q ss_pred CCCCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 211 SFPLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 211 ~RPll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
.+. ....+ +.+.+.+.+|+ |++..+|..+ |||+++++++++++|++.++..
T Consensus 186 ~~~-----~~~~~----~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~-----------Idts~~~~eev~~~I~~~i~~~ 245 (252)
T 4e22_A 186 ERG-----FNVNF----ERLLAEIQERDNRDRNRSVAPLVPAADALV-----------LDSTSMSIEQVIEQALAYAQRI 245 (252)
T ss_dssp HHT-----CCCCH----HHHHHHHC------------CCCCCTTEEE-----------EECSSSCHHHHHHHHHHHHHHH
T ss_pred hcC-----CCCCH----HHHHHHHHHHHHHhhhccccchhccCCeEE-----------EECcCCCHHHHHHHHHHHHHHH
Confidence 000 01122 23333344444 4444455444 7999999999999999999876
Q ss_pred hh
Q 023118 282 LN 283 (287)
Q Consensus 282 l~ 283 (287)
+.
T Consensus 246 ~~ 247 (252)
T 4e22_A 246 LA 247 (252)
T ss_dssp CC
T ss_pred hh
Confidence 54
No 15
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.75 E-value=1.9e-17 Score=138.93 Aligned_cols=155 Identities=16% Similarity=0.248 Sum_probs=103.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH-----HHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV-----EKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i-----e~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
|++|+|+|++||||||+++.|++.++..++|+|.+. .+...|..+.+ ..+...++..+..+...+......|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v 84 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND---DDRKPWLQALNDAAFAMQRTNKVSL 84 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCH---HHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCc---cccccHHHHHHHHHHHHHhcCCcEE
Confidence 899999999999999999999999999999999873 22223655443 2345556655543332222333456
Q ss_pred EecCCceEeccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhh-hhh
Q 023118 169 VATGGGAVVRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEA-YAN 243 (287)
Q Consensus 169 ia~ggG~v~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~-Y~~ 243 (287)
+.+|+ ..+.+++.+++ + .+|||++|++.+.+|+..|+.+.. . . ..+...+..+.+. |..
T Consensus 85 i~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~------~-~------~~~~~~~~~~~~~~~~~ 148 (175)
T 1knq_A 85 IVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFF------K-T------QMLVTQFETLQEPGADE 148 (175)
T ss_dssp EECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCC------C-H------HHHHHHHHHCCCCCTTC
T ss_pred EEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCC------c-h------HHHHHHHHhhhCcccCC
Confidence 66654 24455666654 3 699999999999999987643210 0 1 1233334444555 654
Q ss_pred -CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 244 -ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 244 -ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
+|++ ||++ .++++++++|++.+..
T Consensus 149 ~~~~~------------Id~~-~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 149 TDVLV------------VDID-QPLEGVVASTIEVIKK 173 (175)
T ss_dssp TTEEE------------EECS-SCHHHHHHHHHHHHHC
T ss_pred CCeEE------------EeCC-CCHHHHHHHHHHHHhc
Confidence 5555 4787 6999999999988753
No 16
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.71 E-value=6.8e-18 Score=142.56 Aligned_cols=158 Identities=18% Similarity=0.269 Sum_probs=108.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhh--HHHHHHHhhcCCCeEEec
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREY--ESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~--e~~~l~~l~~~~~~via~ 171 (287)
+..|+|+|++||||||+++.|+..+++.|++.|.++.+.. ++...++..++.. +..++..+.. ++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 79 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-------LYDGYDEEYDCPILDEDRVVDELDN----QMRE 79 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-------CEEEEETTTTEEEECHHHHHHHHHH----HHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-------hhhhhhhhhcCccCChHHHHHHHHH----HHhc
Confidence 6789999999999999999999999999999999986652 2333344444432 2223333321 2334
Q ss_pred CCceEeccccHHhhc---CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEE
Q 023118 172 GGGAVVRPLNWRFMR---QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATV 248 (287)
Q Consensus 172 ggG~v~~~~~~~~L~---~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v 248 (287)
|+. |+...+...+. .+.+|||++|++++.+|+..++ ..+|.... ....+.+..++++|.+.|. ++.++
T Consensus 80 g~~-vv~~~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~-~~~~~~~~------~~~~~~~~~~~~~~~~~y~-~~~~i 150 (180)
T 3iij_A 80 GGV-IVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRG-YNEKKLTD------NIQCEIFQVLYEEATASYK-EEIVH 150 (180)
T ss_dssp CCE-EEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTT-CCHHHHHH------HHHHHHTTHHHHHHHHHSC-GGGEE
T ss_pred CCE-EEEechhhhcchhcCCEEEEEECCHHHHHHHHHHcC-CCHHHHHH------HHHHHHHHHHHHHHHHHcC-CCeEE
Confidence 433 33444444554 3689999999999999998874 23454321 0112557788999999997 45554
Q ss_pred eccccccccccccCCCCCHHHH---HHHHHHHHHHHhh
Q 023118 249 SLLNLAACIGLKDVLDITPTTI---AMEVLVQAQKYLN 283 (287)
Q Consensus 249 ~~~~~a~~~~~idt~~~t~~ev---a~~i~~~i~~~l~ 283 (287)
|++..+|+++ +..|+..++++..
T Consensus 151 ------------~~~~~~~~ev~~~v~~i~~~l~~~~~ 176 (180)
T 3iij_A 151 ------------QLPSNKPEELENNVDQILKWIEQWIK 176 (180)
T ss_dssp ------------EEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------EcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999 7788888777654
No 17
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.70 E-value=9.8e-17 Score=136.22 Aligned_cols=169 Identities=17% Similarity=0.221 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
+..|+|+|++||||||+++.|+..+++.|+|.|.++.... . |..+.+++. .|+..++......+.+.... .
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~---~ 84 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVA---K 84 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHH---H
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHh---c
Confidence 7899999999999999999999999999999999887642 1 334445543 35544544433333322110 0
Q ss_pred EecCCceEecc--ccHH---h----hc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH
Q 023118 169 VATGGGAVVRP--LNWR---F----MR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS 238 (287)
Q Consensus 169 ia~ggG~v~~~--~~~~---~----L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~ 238 (287)
...|+++|++. .+.. . +. .+.+|||++|++.+.+|+..++. .++... +.......++...+..+.
T Consensus 85 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~~~~~~----~~~~~~~~r~~~~~~~~~ 159 (196)
T 2c95_A 85 VNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE-TSGRVD----DNEETIKKRLETYYKATE 159 (196)
T ss_dssp TTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT-SSSCGG----GSHHHHHHHHHHHHHHTH
T ss_pred cccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC-cCCCCC----CCHHHHHHHHHHHHHHHH
Confidence 01233444432 2221 1 23 36899999999999999987642 122221 111223456777778888
Q ss_pred hh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 239 EA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 239 ~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
|+ |..++..+ +||++ .++++++++|.+.+++.+
T Consensus 160 ~~~~~~~~~~~~~----------~Id~~-~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 160 PVIAFYEKRGIVR----------KVNAE-GSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp HHHHHHHHHTCEE----------EEECC-SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCcEE----------EEECC-CCHHHHHHHHHHHHHHhc
Confidence 76 55455433 25776 799999999999998765
No 18
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.69 E-value=2e-17 Score=146.21 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=105.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchh------------------------hhhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVA------------------------QIFKE 144 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~------------------------~~~~~ 144 (287)
|.+|+|+|++||||||+++.|++.++++|+|+|.++.... .|.++. +++ .
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~-~ 94 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVF-V 94 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEE-E
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEe-E
Confidence 8899999999999999999999999999999999976521 465421 111 2
Q ss_pred hchhhhhhhHHHHHH--------------HhhcCCCeEEecCCceEeccccHH--hhcC-CcEEEEecCHHHHHHHHhhc
Q 023118 145 SGEAYFREYESKALQ--------------KLSLVPQQVVATGGGAVVRPLNWR--FMRQ-GITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 145 ~g~~~fr~~e~~~l~--------------~l~~~~~~via~ggG~v~~~~~~~--~L~~-g~~I~L~~~~e~l~~Ri~~~ 207 (287)
.|+..+|..+.+.+. .+.. ....+++|+|+|+.+.++. ++.. +++|||++|++++++|+..+
T Consensus 95 ~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~-~~~~~~~~~~~v~~g~~~~~~~l~~~d~vi~L~a~~e~~~~R~~~~ 173 (236)
T 1q3t_A 95 GDVDITHPIRENEVTNHVSAIAAIPEVREKLVS-LQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKE 173 (236)
T ss_dssp TTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHH-HHHHHHTTSCEEEECSSCSSSSGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred CCcCchhhhccHHHHHHHHHHccCHHHHHHHHH-HHHHhcccCCEEEECCcchhhhccCCCEEEEEECCHHHHHHHHHHH
Confidence 455444433221111 1110 0113345667777655443 3433 78999999999999997321
Q ss_pred CCCCCCCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 208 GTDSFPLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 208 ~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
. ..||... .. +.+.+.+.+|+ |+|..+|..+ ||++++++++++++|.+.+
T Consensus 174 ~-~~R~~~~-----~~----e~~~~~i~~R~~~~~~~~~~p~~~~~d~~v-----------Id~~~~s~eev~~~I~~~l 232 (236)
T 1q3t_A 174 N-IAKGIET-----DL----ETLKKEIAARDYKDSHRETSPLKQAEDAVY-----------LDTTGLNIQEVVEKIKAEA 232 (236)
T ss_dssp H-HHTTCCC-----CH----HHHHHHHHHHHHHHTTCSSSCCSCCTTCEE-----------EECSSCCHHHHHHHHHHHH
T ss_pred H-HhcCCCC-----CH----HHHHHHHHHHhhhhhhcccccccccCCEEE-----------EcCCCCCHHHHHHHHHHHH
Confidence 0 1133211 11 34555666663 5665555333 6899899999999999988
Q ss_pred HHH
Q 023118 279 QKY 281 (287)
Q Consensus 279 ~~~ 281 (287)
+..
T Consensus 233 ~~~ 235 (236)
T 1q3t_A 233 EKR 235 (236)
T ss_dssp HHH
T ss_pred Hhh
Confidence 753
No 19
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.69 E-value=1.7e-17 Score=144.16 Aligned_cols=166 Identities=14% Similarity=0.170 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCC--Cchhhh-------hh----------hhchhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGG--TSVAQI-------FK----------ESGEAY 149 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G--~~i~~~-------~~----------~~g~~~ 149 (287)
+..|+|+|++||||||+++.|+..++++|+|+|.+++.. ..| ..+.++ |. ..|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~~ 82 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDV 82 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCccc
Confidence 568999999999999999999999999999999997642 123 344443 21 245555
Q ss_pred hhhhHHHHHHHh----hcC---------CCeEEecCCceEeccccHH--hhcC-CcEEEEecCHHHHHHHHhhcCCCCCC
Q 023118 150 FREYESKALQKL----SLV---------PQQVVATGGGAVVRPLNWR--FMRQ-GITVFLNVPLDALARRIAAVGTDSFP 213 (287)
Q Consensus 150 fr~~e~~~l~~l----~~~---------~~~via~ggG~v~~~~~~~--~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RP 213 (287)
++..+...+.+. ... .+.++++|+|+|+.+.++. +++. +++|||++|++.+.+|+..+. ..||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~~~~~~~vi~l~a~~e~~~~R~~~~~-~~r~ 161 (219)
T 2h92_A 83 TDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDN-QLRG 161 (219)
T ss_dssp GGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHH-HHTT
T ss_pred hhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCccceecCCCCEEEEEECCHHHHHHHHHHHH-HhcC
Confidence 444322221110 000 0123456677777765443 4443 789999999999999974310 0134
Q ss_pred CcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 214 LLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 214 ll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
+.. .. +.+.+.+++|. |.|..+|..+ ||++++++++++++|.+.++.
T Consensus 162 ~~~-----~~----e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~-----------Id~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 162 IES-----NF----EDLKRDIEARDQYDMNREISPLRKADDAVT-----------LDTTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp CCC-----CH----HHHHHHHHHHHHHHHHCSSSCSCCCTTCEE-----------EECTTCCHHHHHHHHHHHHHT
T ss_pred ccc-----CH----HHHHHHHHHHHHhhhhhhccccccCCCeEE-----------EECCCCCHHHHHHHHHHHHhc
Confidence 311 11 34556666665 7777666333 589989999999999988763
No 20
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.69 E-value=1.4e-16 Score=139.11 Aligned_cols=167 Identities=16% Similarity=0.209 Sum_probs=111.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
|..|+|+|++||||||+++.|+..+++.++++|+++++.. -|..+.+++.. |...++....+++......
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~---- 79 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIES-GNFVGDEIVLGLVKEKFDL---- 79 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHH-TCCCCHHHHHHHHHHHHHT----
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhc----
Confidence 6789999999999999999999999999999999987663 15556666543 5566666666665543221
Q ss_pred EecCCceEec--ccc------HH-hhc-C----CcEEEEecCHHHHHHHHhhcCCC-----------------------C
Q 023118 169 VATGGGAVVR--PLN------WR-FMR-Q----GITVFLNVPLDALARRIAAVGTD-----------------------S 211 (287)
Q Consensus 169 ia~ggG~v~~--~~~------~~-~L~-~----g~~I~L~~~~e~l~~Ri~~~~~~-----------------------~ 211 (287)
+++|+|.|++ +.+ +. .+. . ..+|||++|++++.+|+..+..+ .
T Consensus 80 ~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 159 (217)
T 3be4_A 80 GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVTG 159 (217)
T ss_dssp TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTTC
T ss_pred cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCccccCccccccCCCCccccccccc
Confidence 1245555554 222 12 222 1 37999999999999999876421 1
Q ss_pred CCCcCCCCcchhhHHHHHHHHHHHHHHhh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHH
Q 023118 212 FPLLDYDSADSYTKAFTALSALSKERSEA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQ 277 (287)
Q Consensus 212 RPll~~~~~~~~~~~~~~l~~l~~~R~~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~ 277 (287)
+|++... .+..+...+++...++.+.|+ |...+..+. ||.+ .++++|+++|.+.
T Consensus 160 ~~l~~~~-dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~ 216 (217)
T 3be4_A 160 EPLVWRD-DDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKR----------VNAK-LPPKEVTEQIKKI 216 (217)
T ss_dssp CBCBCCG-GGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEE----------EETT-SCHHHHHHHHHHH
T ss_pred cccccCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE----------EECC-CCHHHHHHHHHhh
Confidence 4554321 223333345666666777776 776443332 5775 6999999999875
No 21
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.68 E-value=3.3e-16 Score=129.27 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=101.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC--CC---c----hhhhhhhhchhhhhhhHHHHHHHhhcCC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG--GT---S----VAQIFKESGEAYFREYESKALQKLSLVP 165 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~--G~---~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~ 165 (287)
..|+|+||+||||||+++.| ..+++.+++.|.++.+... |. . ...++...|...++....+.++. ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence 37999999999999999999 9999999999988876541 11 1 11223334666665554444421 233
Q ss_pred CeEEecCCceEeccccHHhhcC-----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH--H-
Q 023118 166 QQVVATGGGAVVRPLNWRFMRQ-----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE--R- 237 (287)
Q Consensus 166 ~~via~ggG~v~~~~~~~~L~~-----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~--R- 237 (287)
..++.+|- ..+..+..+.+ ..+|||++|++++.+|+..|+ +|.. .... +.+.+.+.. +
T Consensus 79 ~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~---~~~~----~~~~----~~~~~r~~~~~~~ 144 (179)
T 3lw7_A 79 DLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERL---RSDD----SKEI----SELIRRDREELKL 144 (179)
T ss_dssp SCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC-----------CCCH----HHHHHHHHHHHHH
T ss_pred CeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcc---CCCC----cchH----HHHHHHHHhhhcc
Confidence 45666653 44555555543 278999999999999998764 3311 1112 223333221 2
Q ss_pred -Hhhhh-hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 238 -SEAYA-NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 238 -~~~Y~-~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
.+.|. .+|++| |+++ ++++++++|.+.+...+
T Consensus 145 ~~~~~~~~ad~vI------------d~~~-~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 145 GIGEVIAMADYII------------TNDS-NYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp THHHHHHTCSEEE------------ECCS-CHHHHHHHHHHHHHHHC
T ss_pred ChHhHHHhCCEEE------------ECCC-CHHHHHHHHHHHHHHHh
Confidence 22343 478775 6666 99999999999998765
No 22
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.68 E-value=1.3e-16 Score=133.86 Aligned_cols=156 Identities=14% Similarity=0.045 Sum_probs=99.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc--chhHHHHHhCC--------CchhhhhhhhchhhhhhhHHHH---HHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD--SDKYVEKLMGG--------TSVAQIFKESGEAYFREYESKA---LQK 160 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid--~d~~ie~~~~G--------~~i~~~~~~~g~~~fr~~e~~~---l~~ 160 (287)
+..|+|+|+|||||||+++.|+..++..|++ .|.+++... + .++.+.+...++..||..+... ++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMP-LKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSC-GGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcc-hhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 6789999999999999999999999988875 787765432 3 2233333334566777666544 344
Q ss_pred hhcCCCeEEecCC---ceEeccccHHhhcC-C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 161 LSLVPQQVVATGG---GAVVRPLNWRFMRQ-G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 161 l~~~~~~via~gg---G~v~~~~~~~~L~~-g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
+......||..+. +....+.+++.++. + .+|||++|++++.+|+..++ .||+... ..++
T Consensus 82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~--~~~~~~~---------~~~~----- 145 (178)
T 1qhx_A 82 MARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARG--DRVAGMA---------AKQA----- 145 (178)
T ss_dssp HHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTS--SSCTTHH---------HHHT-----
T ss_pred HHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhC--Ccccchh---------hhhc-----
Confidence 4433334444431 11112234455554 4 57899999999999998764 3554310 0111
Q ss_pred HHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 236 ERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 236 ~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
++...|..+|++ |||++++|++++++|++.+
T Consensus 146 ~~~~~~~~~d~~------------idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 146 YVVHEGVEYDVE------------VDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp TGGGTTCCCSEE------------EETTSSCHHHHHHHHHTTC
T ss_pred hhhccCCCCcEE------------EECCCCCHHHHHHHHHHHh
Confidence 111224446765 4899999999999998754
No 23
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.67 E-value=5e-16 Score=135.43 Aligned_cols=170 Identities=17% Similarity=0.201 Sum_probs=109.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhc-CCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSL-VPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~-~~~~ 167 (287)
|..|+|+|++||||||+++.|+..++..|+++|+++.+.. . |..+.+++. .|...++.....++.+... ..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~-- 80 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNP-- 80 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCG--
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhcc--
Confidence 7789999999999999999999999999999999987652 2 333444543 3444555555555554332 11
Q ss_pred EEecCCceEecc--ccHH-------hhc-C----CcEEEEecCHHHHHHHHhhcCCC-----------------------
Q 023118 168 VVATGGGAVVRP--LNWR-------FMR-Q----GITVFLNVPLDALARRIAAVGTD----------------------- 210 (287)
Q Consensus 168 via~ggG~v~~~--~~~~-------~L~-~----g~~I~L~~~~e~l~~Ri~~~~~~----------------------- 210 (287)
++|+|.|++. .+.. .+. . ..+|||++|++.+.+|+..+..+
T Consensus 81 --~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~~~ 158 (220)
T 1aky_A 81 --ACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVT 158 (220)
T ss_dssp --GGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTT
T ss_pred --ccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCCccCccCCccccccCCCccccccccc
Confidence 2445555542 2221 222 1 37999999999999999876321
Q ss_pred CCCCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 211 SFPLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 211 ~RPll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.||++...+ +.......++...++.+.| .|...+..+. ||.+ .++++|+++|.+.+.+
T Consensus 159 ~~~l~~r~d-d~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 159 GEALVQRSD-DNADALKKRLAAYHAQTEPIVDFYKKTGIWAG----------VDAS-QPPATVWADILNKLGK 219 (220)
T ss_dssp CCBCBCCTT-CSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEE----------EETT-SCHHHHHHHHHHHHTC
T ss_pred ccccccCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE----------EECC-CCHHHHHHHHHHHHhc
Confidence 245554321 2222223566666667777 6765443332 5765 5999999999988753
No 24
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.66 E-value=1.4e-15 Score=126.06 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEec---
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVAT--- 171 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~--- 171 (287)
..|+|+|++||||||+++.|+..+++.|+|+|.+..... .+..+|. ....+... ..++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~---~~~~~~~-------------~~~~l~~~-~~vi~dr~~ 64 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS---GNEKLFE-------------HFNKLADE-DNVIIDRFV 64 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT---CHHHHHH-------------HHHHHTTC-CSEEEESCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh---HHHHHHH-------------HHHHHHhC-CCeEEeeee
Confidence 379999999999999999999999999999998874322 1222221 11111111 112211
Q ss_pred --------C--CceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 172 --------G--GGAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 172 --------g--gG~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
+ +........+..+. .+.+|||++|++++.+|+..++ ||... . +.++.+.+.|++
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~---r~~~~---~----~~~~~~~~~~~~ 134 (173)
T 3kb2_A 65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG---DEYIE---G----KDIDSILELYRE 134 (173)
T ss_dssp HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS---CSCCC---H----HHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC---Ccchh---h----hHHHHHHHHHHH
Confidence 0 01112222333332 3689999999999999998763 55443 1 234678889999
Q ss_pred HHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhhc
Q 023118 237 RSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 285 (287)
Q Consensus 237 R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~~ 285 (287)
+.+.|..++++ ||+++.++++++++|.+.++++...+
T Consensus 135 ~~~~~~~~~~~------------id~~~~~~~ev~~~I~~~~~~~~~~~ 171 (173)
T 3kb2_A 135 VMSNAGLHTYS------------WDTGQWSSDEIAKDIIFLVELEHHHH 171 (173)
T ss_dssp HHHTCSSCEEE------------EETTTSCHHHHHHHHHHHHHHGGGCC
T ss_pred HHhhcCCCEEE------------EECCCCCHHHHHHHHHHHHhCCCccc
Confidence 99998755554 58888999999999999999876543
No 25
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.66 E-value=2.1e-16 Score=136.13 Aligned_cols=172 Identities=16% Similarity=0.118 Sum_probs=100.5
Q ss_pred cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc---CCc--cccchhHHHHHhCCCchhhhhh
Q 023118 69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL---DYT--FADSDKYVEKLMGGTSVAQIFK 143 (287)
Q Consensus 69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l---~~~--fid~d~~ie~~~~G~~i~~~~~ 143 (287)
+|+++.++.....+..++...+ |+.|+|+|||||||||+++.|++.+ |.. |+|+|.+......+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~---~ 76 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQK---GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFK---A 76 (200)
T ss_dssp -------CCCCHHHHHHHHTSC---CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSS---H
T ss_pred CCCcccccccCHHHHHHhcCCC---CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcC---h
Confidence 4667777777788888888888 9999999999999999999999999 444 899988752111111110 1
Q ss_pred hhchhhhhhhHHHHHHHhhcCCCeEEecCCceEeccccHHhhc----C--CcEEEEecCHHHHHHHH------hhcCCCC
Q 023118 144 ESGEAYFREYESKALQKLSLVPQQVVATGGGAVVRPLNWRFMR----Q--GITVFLNVPLDALARRI------AAVGTDS 211 (287)
Q Consensus 144 ~~g~~~fr~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~----~--g~~I~L~~~~e~l~~Ri------~~~~~~~ 211 (287)
+.....++ ....+...+......++.+..+. .+..++.++ . .++|||++|++++++|+ ..+..+.
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~~vi~~~~~~--~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~ 153 (200)
T 3uie_A 77 EDRAENIR-RVGEVAKLFADAGIICIASLISP--YRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKI 153 (200)
T ss_dssp HHHHHHHH-HHHHHHHHHHHTTCEEEEECCCC--CHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSS
T ss_pred HHHHHHHH-HHHHHHHHHHhCCceEEEecCCc--hHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCC
Confidence 11112222 12233333333344455443321 123344333 2 24699999999999996 3332222
Q ss_pred CCCcCCCCcchhhHHHHHHHHHHHHHHhhhhh---CCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHHH
Q 023118 212 FPLLDYDSADSYTKAFTALSALSKERSEAYAN---ADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 212 RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~---ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~~ 281 (287)
.++.. .+..|+. ++++ |||++ +++++++++|++.+...
T Consensus 154 ~~~~~--------------------~~~~~~~~~~~~~~------------idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 154 KGFTG--------------------IDDPYEPPLNCEIS------------LGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp CSCBT--------------------TTBCCCCCSSCSEE------------ECCSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCC--------------------CCCcCcCCCCCCEE------------EecCCCCCHHHHHHHHHHHHHHc
Confidence 22111 0122432 3443 69998 79999999999998753
No 26
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.66 E-value=2.2e-16 Score=137.43 Aligned_cols=172 Identities=18% Similarity=0.221 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhh------hhhh----------------hc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQ------IFKE----------------SG 146 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~------~~~~----------------~g 146 (287)
+..|+|+||+||||||++++|++.++++++|+|.++.... .|.++.+ +... .|
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 4689999999999999999999999999999999976432 3665431 1000 11
Q ss_pred h---hhhhhhHHH----------HHHHhhcCCCeEEecCCceEeccccHH--hhcC-CcEEEEecCHHHHHHHHhhcCCC
Q 023118 147 E---AYFREYESK----------ALQKLSLVPQQVVATGGGAVVRPLNWR--FMRQ-GITVFLNVPLDALARRIAAVGTD 210 (287)
Q Consensus 147 ~---~~fr~~e~~----------~l~~l~~~~~~via~ggG~v~~~~~~~--~L~~-g~~I~L~~~~e~l~~Ri~~~~~~ 210 (287)
. +.++..+.. .+++.......++++++|.++.+.++. .+.. +++|||++|++++.+|+..+- .
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~~~d~~i~l~~~~e~~~~R~~~~l-~ 163 (227)
T 1cke_A 85 EDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQL-Q 163 (227)
T ss_dssp EECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHH-H
T ss_pred eeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEecCCCEEEEEeCCHHHHHHHHHHHH-H
Confidence 1 234432221 111111000111233456665544322 3333 789999999999999954210 0
Q ss_pred CCCCcCCCCcchhhHHHHHHHH-----HHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 211 SFPLLDYDSADSYTKAFTALSA-----LSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 211 ~RPll~~~~~~~~~~~~~~l~~-----l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
.|+... .+++..+++.+ ....+.|+|..++..+ ||+++.++++++++|.+.+.+++
T Consensus 164 ~rg~~~-----~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~-----------Id~~~~~~~ev~~~I~~~l~~~~ 224 (227)
T 1cke_A 164 VKGFSV-----NFERLLAEIKERDDRDRNRAVAPLVPAADALV-----------LDSTTLSIEQVIEKALQYARQKL 224 (227)
T ss_dssp HHTCCC-----CHHHHHHHHC-------------CCCCTTCEE-----------EETTTSCHHHHHHHHHHHHHHHH
T ss_pred hCCccC-----CHHHHHHHHHHHHHhhhhhcccCccCCCCEEE-----------EeCCCCCHHHHHHHHHHHHHHhh
Confidence 122211 11222233332 1124467776644333 68988899999999999998765
No 27
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.65 E-value=2.7e-16 Score=134.69 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=100.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchh-----------------------hhhhhhch
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVA-----------------------QIFKESGE 147 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~-----------------------~~~~~~g~ 147 (287)
.|+|+|++||||||+++.|++.++++|+|.|.+..... .|.+.. ++| ..|+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~ 82 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVL-ADGE 82 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEE-ETTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEE-ECCe
Confidence 79999999999999999999999999999999876542 244211 111 2455
Q ss_pred hhhhhhHHHHHHHhh---cCCCeE----------EecCCceEeccccHH--hhc-CCcEEEEecCHHHHHHHHhhcCCCC
Q 023118 148 AYFREYESKALQKLS---LVPQQV----------VATGGGAVVRPLNWR--FMR-QGITVFLNVPLDALARRIAAVGTDS 211 (287)
Q Consensus 148 ~~fr~~e~~~l~~l~---~~~~~v----------ia~ggG~v~~~~~~~--~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~ 211 (287)
..|+..+...+.... ..++.+ ++ +++|+...++. ++. .+.+|||++|++.+.+|+..+..
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~~~~~~~~d~~i~l~a~~e~~~~R~~~r~~-- 158 (208)
T 3ake_A 83 DLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERP-- 158 (208)
T ss_dssp ECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHTSS--
T ss_pred eCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEccceeEEEecCCcEEEEEECCHHHHHHHHHhhcc--
Confidence 555544333222100 000000 11 33444433322 223 26899999999999999876421
Q ss_pred CCCcCCCCcchhhHHHHHHHHHHHHHHhhh----hh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 212 FPLLDYDSADSYTKAFTALSALSKERSEAY----AN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 212 RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y----~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
. . .+++.+.+.+|++.| .. +|.. +||++++++++++++|.+.++
T Consensus 159 ------~---~----~~~~~~~~~~R~~~~~~~~~~~ad~~-----------~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 159 ------Q---A----YEEVLRDLLRRDERDKAQSAPAPDAL-----------VLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp ------S---C----HHHHHHHHHHHHHTC--CCCCCTTCE-----------EEETTTSCHHHHHHHHHHHHH
T ss_pred ------c---C----HHHHHHHHHHHHHHHhhcccCCCCEE-----------EEECCCCCHHHHHHHHHHHHh
Confidence 1 1 145678888999888 33 4522 268998999999999998774
No 28
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.65 E-value=2e-15 Score=127.27 Aligned_cols=168 Identities=12% Similarity=0.132 Sum_probs=102.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHh--CCC--chhhhhhhhchhhhhhhHHHH---HHH
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLM--GGT--SVAQIFKESGEAYFREYESKA---LQK 160 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~--~G~--~i~~~~~~~g~~~fr~~e~~~---l~~ 160 (287)
+|..|+|+|++||||||+++.|+..++ +.|++.|+++.+.. .|. +..+++. ...+.++..+..+ +..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 80 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE 80 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence 377999999999999999999999998 89999998765443 243 4444432 1223333333222 333
Q ss_pred hhcCCCeEEecCCceEeccccH------Hhhc---CCcEEEEecCHHHHHH-HHhhcCCCCCCCcCCCCcchhhHHHHHH
Q 023118 161 LSLVPQQVVATGGGAVVRPLNW------RFMR---QGITVFLNVPLDALAR-RIAAVGTDSFPLLDYDSADSYTKAFTAL 230 (287)
Q Consensus 161 l~~~~~~via~ggG~v~~~~~~------~~L~---~g~~I~L~~~~e~l~~-Ri~~~~~~~RPll~~~~~~~~~~~~~~l 230 (287)
+.. ...+|.+|++.+..+..+ ..++ .+++|||++|++++.+ |+.... +.||... .+... ....+
T Consensus 81 ~~~-~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~-R~r~~~~---~~~~~-~~~~~ 154 (192)
T 1kht_A 81 MAK-ESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDET-RVRDLDT---ASTIE-QHQFM 154 (192)
T ss_dssp HHT-TSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSS-CSSSCCC---HHHHH-HHHHH
T ss_pred hcc-CCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcc-cCCCcCC---HHHHH-HHHHH
Confidence 332 345777787765444332 2332 3689999999999996 997511 1244332 11111 12345
Q ss_pred HHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 231 SALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 231 ~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
.+.+..+.+.|..+...+ |+....++++++++|++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~-----------i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 155 NRCAAMSYGVLTGATVKI-----------VQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHHHHHHCCEEEE-----------EECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEE-----------EeCCCCCHHHHHHHHHHHh
Confidence 556666666675543332 3333346999999998765
No 29
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.65 E-value=1.5e-15 Score=132.63 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=108.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhh----hhh-hHHHHHHHhhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAY----FRE-YESKALQKLSL 163 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~----fr~-~e~~~l~~l~~ 163 (287)
+..|+|+|++||||||+++.|+..++..|+|.|.++.+.. .|..+.+++. .|+.. +.. .+..+......
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFME-KGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHH-cCCcCCHHHHHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999887631 1444555543 23222 221 11111111111
Q ss_pred CCCeEEecCCceEeccccHHhhcC-----CcEEEEecCHHHHHHHHhhcCCCC-------------------CCCcCCCC
Q 023118 164 VPQQVVATGGGAVVRPLNWRFMRQ-----GITVFLNVPLDALARRIAAVGTDS-------------------FPLLDYDS 219 (287)
Q Consensus 164 ~~~~via~ggG~v~~~~~~~~L~~-----g~~I~L~~~~e~l~~Ri~~~~~~~-------------------RPll~~~~ 219 (287)
....|+ .| .+........|.. +++|||++|++.+.+|+..+..+. +|+... .
T Consensus 84 ~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r-~ 159 (222)
T 1zak_A 84 ENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQR-F 159 (222)
T ss_dssp HTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCC-T
T ss_pred CCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccC-C
Confidence 223334 44 1212122333432 589999999999999998653210 233322 1
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhCC-eEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 220 ADSYTKAFTALSALSKERSEAYANAD-ATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 220 ~~~~~~~~~~l~~l~~~R~~~Y~~ad-~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
.+..+....++.+.+.++.|++..++ ..+ +||+ +.++++|+++|.+.+...+..
T Consensus 160 ~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~----------~Id~-~~~~~ev~~~I~~~l~~~l~~ 214 (222)
T 1zak_A 160 DDTEEKVKLRLETYYQNIESLLSTYENIIV----------KVQG-DATVDAVFAKIDELLGSILEK 214 (222)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHTTCCCEE----------EEEC-SSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcEE----------EEEC-CCCHHHHHHHHHHHHHhhccc
Confidence 12233344566778888888665432 122 2688 579999999999999887653
No 30
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.65 E-value=1.6e-15 Score=130.57 Aligned_cols=153 Identities=20% Similarity=0.238 Sum_probs=96.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhh---h--------------HH
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFRE---Y--------------ES 155 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~---~--------------e~ 155 (287)
.+|+|+|++||||||+++.|++ +|+.|+|+|.+..... ++..+.+++...|...|+. . ..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 3799999999999999999999 8999999999875532 2334555555556555431 0 00
Q ss_pred HHHHH-------------hhcCCCeEEecCCceEecc----ccHHhhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCC
Q 023118 156 KALQK-------------LSLVPQQVVATGGGAVVRP----LNWRFMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDY 217 (287)
Q Consensus 156 ~~l~~-------------l~~~~~~via~ggG~v~~~----~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~ 217 (287)
..+.. +... .++++|... ++. +.. -+.+|||++|++++.+|+..|.+ +
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~------~~~~vv~~~~~l~e~~-~~~~~d~vi~l~~~~e~~~~Rl~~R~~--~----- 147 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQ------TAPYTLFVVPLLIENK-LTALCDRILVVDVSPQTQLARSAQRDN--N----- 147 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC------CSSEEEEECTTTTTTT-CGGGCSEEEEEECCHHHHHHHHC------------
T ss_pred HHHHhccCHHHHHHHHHHHHhc------CCCEEEEEechhhhcC-cHhhCCEEEEEECCHHHHHHHHHHcCC--C-----
Confidence 01111 1110 122333221 111 122 26899999999999999976421 1
Q ss_pred CCcchhhHHHHHHHHHHH---HHHhhhhhCCeEEeccccccccccccCCCCCHH----HHHHHHHHHHHHHhh
Q 023118 218 DSADSYTKAFTALSALSK---ERSEAYANADATVSLLNLAACIGLKDVLDITPT----TIAMEVLVQAQKYLN 283 (287)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~---~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~----eva~~i~~~i~~~l~ 283 (287)
.. +.+.+.++ .+.+.|+.||++| |+++ +++ +++++|.+.+.+++.
T Consensus 148 ----~~----e~~~~r~~~q~~~~~~~~~ad~vI------------dn~~-~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 148 ----NF----EQIQRIMNSQVSQQERLKWADDVI------------NNDA-ELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp ----CH----HHHHHHHHHSCCHHHHHHHCSEEE------------ECCS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CH----HHHHHHHHhcCChHHHHHhCCEEE------------ECCC-CccccHHHHHHHHHHHHHHHHH
Confidence 11 23444555 4678888888765 7887 999 999999988877654
No 31
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.64 E-value=4.8e-15 Score=130.66 Aligned_cols=171 Identities=19% Similarity=0.242 Sum_probs=109.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
+..|+|+|++||||||+++.|+..+++.|+++|+++++.. . |..+.+++ ..|...++.....++.......
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~-~~g~~~~~~~~~~~i~~~l~~~--- 91 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATM-DAGKLVSDEMVLELIEKNLETP--- 91 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHTSG---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHH-HCCCcCCHHHHHHHHHHHHhcc---
Confidence 6789999999999999999999999999999999987642 1 33444454 2344455555555555433222
Q ss_pred EecCCceEec--cccH-------Hhhc-----CCcEEEEecCHHHHHHHHhhcCCC-----------------------C
Q 023118 169 VATGGGAVVR--PLNW-------RFMR-----QGITVFLNVPLDALARRIAAVGTD-----------------------S 211 (287)
Q Consensus 169 ia~ggG~v~~--~~~~-------~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~-----------------------~ 211 (287)
.+|+|.|++ +.+. +.+. .+.+|||++|++++.+|+..|..+ .
T Consensus 92 -~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 170 (233)
T 1ak2_A 92 -PCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITG 170 (233)
T ss_dssp -GGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTTTC
T ss_pred -cccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCcCCccCCccccccCCCcccccccccc
Confidence 245566655 3332 1221 268999999999999999876321 2
Q ss_pred CCCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 212 FPLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 212 RPll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+|++...+ +..+....++...++.+.| .|...+..+ +||++ .++++|+++|.+.++.+
T Consensus 171 ~~l~~r~d-~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~----------~id~~-~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 171 EPLIRRSD-DNKKALKIRLEAYHTQTTPLVEYYSKRGIHS----------AIDAS-QTPDVVFASILAAFSKA 231 (233)
T ss_dssp CBCEECCC-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCEE----------EEETT-SCHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEE----------EEECC-CCHHHHHHHHHHHHHhh
Confidence 34433211 2222223455554455666 454333222 26887 69999999999998865
No 32
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.62 E-value=1e-16 Score=135.73 Aligned_cols=165 Identities=16% Similarity=0.098 Sum_probs=91.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHH-------HHHhhcCCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKA-------LQKLSLVPQ 166 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~-------l~~l~~~~~ 166 (287)
+..|+|+|++||||||+++.|+..+++.|+++|.+.+...++ + ...+...++..+... ++.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 78 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG--L----GWSDREWSRRVGATAIMMLYHTAATILQSGQ 78 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH--H----CCCSHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh--c----CccchHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence 789999999999999999999999999999999987665421 1 111223333322211 122111122
Q ss_pred eEEecCCceEeccc----cHHhhcC-C----cEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 167 QVVATGGGAVVRPL----NWRFMRQ-G----ITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 167 ~via~ggG~v~~~~----~~~~L~~-g----~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
.++..+.. ... .+..+.. + .+|||++|++++.+|+..|+.. .||+.+.. ..|.+ ..++.++++.
T Consensus 79 ~vi~d~~~---~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~--~~~~~-~~~~~~~~~~ 152 (193)
T 2rhm_A 79 SLIMESNF---RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCD--DRSPA-DLELVRSRGD 152 (193)
T ss_dssp CEEEEECC---CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC----------CHH-HHHHHHHSCC
T ss_pred eEEEecCC---CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCccccc--CccCc-chhhHHHHhc
Confidence 23333221 110 1111332 2 6899999999999999876422 46654321 12211 0135556666
Q ss_pred HHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 237 RSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 237 R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+.+.|.. ++++ |||+..++ +++++|++.|...+.
T Consensus 153 ~~~~~~~~~~~~------------Idt~~~~~-~~~~~i~~~i~~~l~ 187 (193)
T 2rhm_A 153 IPPLPLGGPLLT------------VDTTFPEQ-IDMNAIVQWVRQHLQ 187 (193)
T ss_dssp CCCCCCCSCEEE------------EECSSGGG-CCHHHHHHHHHHHHH
T ss_pred CCCccCCCCEEE------------EeCCCCcc-cCHHHHHHHHHHHHH
Confidence 6677753 4444 57777533 445555555554443
No 33
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.62 E-value=2.9e-15 Score=126.45 Aligned_cols=164 Identities=17% Similarity=0.188 Sum_probs=103.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHhhcCCCe
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKLSLVPQQ 167 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~ 167 (287)
.|..|+|+|++||||||+++.|+..+++.++|+|.++.+.. . |..+.++|. .|...++......+.+.... .
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~l~~--~ 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIME-RGDLVPDDLILELIREELAE--R 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHCCS--E
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHhcC--C
Confidence 37899999999999999999999999999999999887652 2 334455554 35566666666666654432 2
Q ss_pred EEecCCceEeccccHH----hhc-----CCcEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118 168 VVATGGGAVVRPLNWR----FMR-----QGITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALSALSKER 237 (287)
Q Consensus 168 via~ggG~v~~~~~~~----~L~-----~g~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~~l~~~R 237 (287)
++..|- +....... ++. .+.+|||++|++++.+|+..|.. ..|+-. ..+ ....++...+..+
T Consensus 80 ~i~dg~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~---~~~---~~~~r~~~~~~~~ 151 (186)
T 3cm0_A 80 VIFDGF--PRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDD---NEE---TVRRRLEVYREKT 151 (186)
T ss_dssp EEEESC--CCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSC---CHH---HHHHHHHHHHHHH
T ss_pred EEEeCC--CCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCC---CHH---HHHHHHHHHHHHH
Confidence 444432 11111111 232 14789999999999999987630 013211 111 1224455555565
Q ss_pred Hhh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHH
Q 023118 238 SEA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 238 ~~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i 278 (287)
.|+ |..++..+ +||++ .++++++++|.+.+
T Consensus 152 ~~l~~~~~~~~~~~----------~id~~-~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 152 EPLVGYYEARGVLK----------RVDGL-GTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHHTTCEE----------EEECC-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcEE----------EEECC-CCHHHHHHHHHHHh
Confidence 664 44444222 15765 69999999998876
No 34
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.62 E-value=3.4e-15 Score=128.27 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH-----HHhCCCchhhhhhhhchhhhhhhHHHHHHHh-hcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE-----KLMGGTSVAQIFKESGEAYFREYESKALQKL-SLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie-----~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l-~~~~~~ 167 (287)
...|+|+|++||||||+++.|++.+++.++|+|.+.. ....|..+.+. .....++ .+.+. ......
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~---~~~~~~~-----~l~~~~~~~~~v 89 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDD---DRWPWLA-----AIGERLASREPV 89 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHH---HHHHHHH-----HHHHHHTSSSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCch---hhHHHHH-----HHHHHHhcCCCE
Confidence 4589999999999999999999999999999998741 11113222211 1122222 12222 222334
Q ss_pred EEecCCceEeccccHHhhcC-----CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118 168 VVATGGGAVVRPLNWRFMRQ-----GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA 242 (287)
Q Consensus 168 via~ggG~v~~~~~~~~L~~-----g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~ 242 (287)
|+.++.+ .+..+..+.. ..+|||++|++++.+|+..|..+..| .+.+...++.+.+.|.
T Consensus 90 ivd~~~~---~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~-------------~~~~~~~~~~~~~~~~ 153 (202)
T 3t61_A 90 VVSCSAL---KRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP-------------SSLLQTQLETLEDPRG 153 (202)
T ss_dssp EEECCCC---SHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC-------------HHHHHHHHHHCCCCTT
T ss_pred EEECCCC---CHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC-------------HHHHHHHHHhcCCCCC
Confidence 4444432 3344454542 37899999999999999887533222 1345666777777776
Q ss_pred h-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 243 N-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 243 ~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
. ++++ ||++ .++++++++|++.+.+.
T Consensus 154 ~~~~~~------------Id~~-~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 154 EVRTVA------------VDVA-QPLAEIVREALAGLARL 180 (202)
T ss_dssp STTEEE------------EESS-SCHHHHHHHHHHHHHHH
T ss_pred CCCeEE------------EeCC-CCHHHHHHHHHHHHHHh
Confidence 5 4544 5787 79999999999998753
No 35
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=127.84 Aligned_cols=169 Identities=14% Similarity=0.173 Sum_probs=104.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHHHHh----hcC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKALQKL----SLV 164 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l~~l----~~~ 164 (287)
+..|+|+|++||||||+++.|+..+++.++|.|.++.... . |..+.+++. .|...++......+.+. ...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~~ 90 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLGD 90 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccccc
Confidence 6799999999999999999999999999999999876654 2 333444443 34433433333333221 111
Q ss_pred CCeEEecCCceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh
Q 023118 165 PQQVVATGGGAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE 239 (287)
Q Consensus 165 ~~~via~ggG~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~ 239 (287)
...++..| .+........+. .+.+|||++|++.+.+|+..++. .++.. .+..++...++...+..+.|
T Consensus 91 ~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~-~~~~~----~~~~~~~~~r~~~~~~~~~~ 163 (199)
T 2bwj_A 91 TRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR-SSLPV----DDTTKTIAKRLEAYYRASIP 163 (199)
T ss_dssp CSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC-CCSCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC-CCCCC----CCCHHHHHHHHHHHHHHHHH
Confidence 22343333 111111222221 26899999999999999987642 11111 11122223455556666766
Q ss_pred ---hhhhCCe-EEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 240 ---AYANADA-TVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 240 ---~Y~~ad~-~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
.|..++. .+ ||++ .++++++++|.+.+++.+
T Consensus 164 ~~~~~~~~~~~~~-----------id~~-~~~e~v~~~i~~~l~~~~ 198 (199)
T 2bwj_A 164 VIAYYETKTQLHK-----------INAE-GTPEDVFLQLCTAIDSIF 198 (199)
T ss_dssp HHHHHHHHSEEEE-----------EETT-SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCEEE-----------EECC-CCHHHHHHHHHHHHHHhc
Confidence 5665443 33 5754 699999999999987654
No 36
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.61 E-value=6.1e-15 Score=126.57 Aligned_cols=161 Identities=14% Similarity=0.159 Sum_probs=104.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-hCCC----chhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-MGGT----SVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-~~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
+..|+|+|++||||||+++.|+..+++.+++.|.++.+. ..|. .+.+++. .|...++......+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~---- 94 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNN---- 94 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTS----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhc----
Confidence 678999999999999999999999999999999988763 2232 3344432 35555555555555553322
Q ss_pred EecCCceEec--cccH-------Hhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHH
Q 023118 169 VATGGGAVVR--PLNW-------RFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALS 234 (287)
Q Consensus 169 ia~ggG~v~~--~~~~-------~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~ 234 (287)
..+|+|+|++ +.++ ..+. -..+|||++|++++.+|+..|+ ||. +..+....++...+
T Consensus 95 ~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---r~~------~~~e~~~~r~~~~~ 165 (201)
T 2cdn_A 95 PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRG---RAD------DTDDVILNRMKVYR 165 (201)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHC---CTT------CSHHHHHHHHHHHH
T ss_pred ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC---CCC------CCHHHHHHHHHHHH
Confidence 1345666665 3332 2232 2579999999999999998764 331 11112234455555
Q ss_pred HHHHhhhhhC-CeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 235 KERSEAYANA-DATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 235 ~~R~~~Y~~a-d~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
..+.|+++.+ ...+ +||++ .++++++++|.+.++
T Consensus 166 ~~~~~~~~~~~~~~~----------~Id~~-~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 166 DETAPLLEYYRDQLK----------TVDAV-GTMDEVFARALRALG 200 (201)
T ss_dssp HHTTTHHHHTTTTEE----------EEECC-SCHHHHHHHHHHHTT
T ss_pred HhhHHHHHHhcCcEE----------EEeCC-CCHHHHHHHHHHHHc
Confidence 5666655431 1111 15775 699999999988763
No 37
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.61 E-value=5e-16 Score=154.31 Aligned_cols=163 Identities=13% Similarity=0.184 Sum_probs=94.3
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC------CccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHH
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALD------YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQK 160 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~------~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~ 160 (287)
.+.+ |++|+|+|+||||||||+++|++.++ ..|+|+|.+.+.+..+..... ..+...+|. ...+.+.
T Consensus 365 ~~~~---G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~---~~r~~~~r~-i~~v~q~ 437 (552)
T 3cr8_A 365 RERQ---GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSK---AHRDVNVRR-IGFVASE 437 (552)
T ss_dssp GGGS---CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSH---HHHHHHHHH-HHHHHHH
T ss_pred cccc---ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCH---HHHHHHHHH-HHHHHHH
Confidence 4556 99999999999999999999999985 446898888654321211111 122233443 3456666
Q ss_pred hhcCCCeEEecCCc--eEeccccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHH
Q 023118 161 LSLVPQQVVATGGG--AVVRPLNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSK 235 (287)
Q Consensus 161 l~~~~~~via~ggG--~v~~~~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~ 235 (287)
+....+.+++++++ ...+..+++.|.. | ++|||++|++.+.+|+. ||++.... ...+.+++.
T Consensus 438 l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~------r~l~~~~~-------~~~i~~l~~ 504 (552)
T 3cr8_A 438 ITKNRGIAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDR------KGLYAKAR-------AGLIPEFTG 504 (552)
T ss_dssp HHHTTCEEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC----------------------------------------
T ss_pred HHhcCCEEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhcc------cccccccc-------HhHHHHHHh
Confidence 66556677777653 3334456667765 7 89999999999999953 56654211 134778888
Q ss_pred HHHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 236 ERSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 236 ~R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
.|.++|. .+|++| ||+..+|++++++|++.+...
T Consensus 505 ~r~~~e~P~~adl~I------------dt~~~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 505 VSDPYEVPETPELAI------------DTTGLAIDEAVQQILLKLEHE 540 (552)
T ss_dssp --CCCCCCSSCSEEE------------CCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCEEE------------ECCCCCHHHHHHHHHHHHHhc
Confidence 9999885 377664 899999999999999998753
No 38
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.61 E-value=8.1e-15 Score=123.50 Aligned_cols=167 Identities=14% Similarity=0.160 Sum_probs=104.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCC----chhhhhhhhchhhhhhhHHHHHHHhhcC--CC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGT----SVAQIFKESGEAYFREYESKALQKLSLV--PQ 166 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~--~~ 166 (287)
+..|+|+|++||||||+++.|+..+++.++|.|.++.+.. .|. .+.++|. .|...++......+.+.... ..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIK-NGEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999999876653 233 3344443 24434444444455443321 12
Q ss_pred eEEecCCceEeccccHHhh----c----CCcEEEEecCHHHHHHHHhhcCCC-CCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118 167 QVVATGGGAVVRPLNWRFM----R----QGITVFLNVPLDALARRIAAVGTD-SFPLLDYDSADSYTKAFTALSALSKER 237 (287)
Q Consensus 167 ~via~ggG~v~~~~~~~~L----~----~g~~I~L~~~~e~l~~Ri~~~~~~-~RPll~~~~~~~~~~~~~~l~~l~~~R 237 (287)
.++..| .+.....+..+ . .+.+|||++|++.+.+|+..|+.. .|+. +..++...++...++.+
T Consensus 85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~------~~~~~~~~ri~~~~~~~ 156 (194)
T 1qf9_A 85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSD------DNIESIKKRFNTFNVQT 156 (194)
T ss_dssp CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTT------CSHHHHHHHHHHHHHTH
T ss_pred CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCC------CCHHHHHHHHHHHHHhH
Confidence 233332 11112222222 2 257899999999999999876421 1211 11223345666666677
Q ss_pred Hhhh---hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 238 SEAY---ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 238 ~~~Y---~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.|.| ..+|..+ +||++ .++++++++|.+.+++
T Consensus 157 ~~~~~~~~~~~~~~----------~id~~-~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 157 KLVIDHYNKFDKVK----------IIPAN-RDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHHTTCEE----------EEECS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEE----------EEECC-CCHHHHHHHHHHHHHH
Confidence 7644 4466322 15777 7999999999998875
No 39
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.59 E-value=8.6e-15 Score=130.66 Aligned_cols=172 Identities=20% Similarity=0.223 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHH-----hCCCchhhh------hhh----------------hc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKL-----MGGTSVAQI------FKE----------------SG 146 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~-----~~G~~i~~~------~~~----------------~g 146 (287)
...|+|+||+||||||+++.|++.+++.|+|+|.++... ..|.++.+. ... .|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 458999999999999999999999999999999986442 235554432 000 00
Q ss_pred ---------------------hhhhhhhHHHHHHHhhcCCCeEEecCC--ceEeccccHHhhcCCcEEEEecCHHHHHHH
Q 023118 147 ---------------------EAYFREYESKALQKLSLVPQQVVATGG--GAVVRPLNWRFMRQGITVFLNVPLDALARR 203 (287)
Q Consensus 147 ---------------------~~~fr~~e~~~l~~l~~~~~~via~gg--G~v~~~~~~~~L~~g~~I~L~~~~e~l~~R 203 (287)
.+..|..-.+..++++.....+|..|. |++..|.+ .+.|||++|++.+++|
T Consensus 89 ~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pda------~lkifl~A~~e~Ra~R 162 (233)
T 3r20_A 89 EDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPDA------DVKIFLTASAEERARR 162 (233)
T ss_dssp EECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTTC------SEEEEEECCHHHHHHH
T ss_pred eehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCCC------CEEEEEECCHHHHHHH
Confidence 112222333344455544133444553 44433332 5899999999999999
Q ss_pred HhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 204 IAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 204 i~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.... +.....+..++++..++.+.-..+...|. +.+. -+++..+|||++++++++++.|++.++..+.
T Consensus 163 r~~~------l~~~~~~~~~~~~~~~i~~rD~~d~~r~~-~pl~-----~~~dal~IDTs~l~iee~v~~I~~~i~~~~~ 230 (233)
T 3r20_A 163 RNAQ------NVANGLPDDYATVLADVQRRDHLDSTRPV-SPLR-----AADDALVVDTSDMDQAQVIAHLLDLVTAQAG 230 (233)
T ss_dssp HHHH------HHHTTCCCCHHHHHHHHHHHHHHHHHSCS-SCCS-----CCTTSEEEECTTSCHHHHHHHHHHHC-----
T ss_pred HHHH------HHhccCCCCHHHHHHHHHHHHHhhhhccc-cccc-----cccCcEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 7641 11101112343333333333222222332 1111 1222234899999999999999999886654
No 40
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.59 E-value=2e-15 Score=126.88 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccc-cchhHHHHHhCCCchhhhhhhhchhhhhhhH------HHHHHHhhcC-C
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA-DSDKYVEKLMGGTSVAQIFKESGEAYFREYE------SKALQKLSLV-P 165 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi-d~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e------~~~l~~l~~~-~ 165 (287)
+..|+|+|++||||||+++.|+..++.+|+ |.+.+ |..+.+++. .|...|+..+ .+.++.+... .
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~------g~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~g 77 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM------GQALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREAA 77 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH------HHHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh------HHHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhCC
Confidence 678999999999999999999999999998 64321 333444443 3444444322 2333333221 2
Q ss_pred CeEEecCCceE--eccccHHhhc-CCcE---EEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh
Q 023118 166 QQVVATGGGAV--VRPLNWRFMR-QGIT---VFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE 239 (287)
Q Consensus 166 ~~via~ggG~v--~~~~~~~~L~-~g~~---I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~ 239 (287)
..|+..+.-.- .....+..++ .|.. |||++|++.+.+|+..++ .||+ . .+.+.++++.+.+
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~--~r~~-~----------~~~~~~~~~~~~~ 144 (183)
T 2vli_A 78 GPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDG--QPQV-N----------VGTVEDRLNELRG 144 (183)
T ss_dssp SCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC------C-C----------HHHHHHHHHHHTS
T ss_pred CcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhcc--ccch-h----------HHHHHHHHHhhcc
Confidence 22332211000 1112333444 3554 999999999999998764 3552 1 1346667777776
Q ss_pred hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 240 AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 240 ~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
. ..++ + ||+++.++++++++|++.+...+.
T Consensus 145 ~-~~~~-~------------Id~~~~~~~~~~~~I~~~l~~~~~ 174 (183)
T 2vli_A 145 E-QFQT-H------------IDTAGLGTQQVAEQIAAQVGLTLA 174 (183)
T ss_dssp G-GGCS-E------------EECTTCCHHHHHHHHHHHHTCCCC
T ss_pred c-ccce-E------------eeCCCCCHHHHHHHHHHHHHHhcC
Confidence 6 3233 3 689889999999999999977654
No 41
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.59 E-value=5.4e-15 Score=129.54 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-C----CCchhhhhhhhchhhhhhhHHHHH-HHhhc--CC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-G----GTSVAQIFKESGEAYFREYESKAL-QKLSL--VP 165 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~----G~~i~~~~~~~g~~~fr~~e~~~l-~~l~~--~~ 165 (287)
+..|+|+|++||||||+++.|+..++..++|.|.++.... + |..+.+++. .|...++......+ ..+.. ..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~l~~~~~~ 85 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFID-QGKLIPDDVMTRLALHELKNLTQY 85 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccCC
Confidence 6789999999999999999999999999999999887654 2 333445543 25445554444433 33332 23
Q ss_pred CeEEecCCceEeccccHHhhc-CCcEEEEecCHHHHHHHHhhc
Q 023118 166 QQVVATGGGAVVRPLNWRFMR-QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 166 ~~via~ggG~v~~~~~~~~L~-~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
..|+..+++++.....+..+. .+.+|||++|++.+.+|+..+
T Consensus 86 ~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R 128 (227)
T 1zd8_A 86 SWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTAR 128 (227)
T ss_dssp CEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCE
T ss_pred CEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcC
Confidence 334444344433322233333 378999999999999999765
No 42
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.59 E-value=1.1e-14 Score=124.92 Aligned_cols=168 Identities=14% Similarity=0.164 Sum_probs=102.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhh----hhhhhchhhhhhhHHHHHHHhhcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQ----IFKESGEAYFREYESKALQKLSLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~----~~~~~g~~~fr~~e~~~l~~l~~~~~~ 167 (287)
...|+|+|++||||||+++.|+..++..++|.|.++.+.. .|..+.+ ++. .|...++......+.+....
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~--- 90 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISD--- 90 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHH---
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHh---
Confidence 5689999999999999999999999999999999887653 3544333 322 34444443333333332110
Q ss_pred EEecC-CceEec--cccHH-------hhc-CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 168 VVATG-GGAVVR--PLNWR-------FMR-QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 168 via~g-gG~v~~--~~~~~-------~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
.+..| .+.+++ +.++. .+. .+.+|||++|++++.+|+..|+. .++... +..+....++...++.
T Consensus 91 ~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~-~~~~~~----~~~e~~~~r~~~~~~~ 165 (203)
T 1ukz_A 91 NVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGK-TSGRSD----DNIESIKKRFNTFKET 165 (203)
T ss_dssp HHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHH-HHCCTT----CSHHHHHHHHHHHHHT
T ss_pred hhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccc-cCCCCC----CCHHHHHHHHHHHHHh
Confidence 11122 122221 22221 222 26899999999999999987631 122211 1222223445555666
Q ss_pred HHhhh---hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 237 RSEAY---ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 237 R~~~Y---~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+.|.| ..++..+ +||++ .++++++++|.+.+++.
T Consensus 166 ~~~~~~~~~~~~~vi----------~id~~-~~~e~v~~~i~~~l~~~ 202 (203)
T 1ukz_A 166 SMPVIEYFETKSKVV----------RVRCD-RSVEDVYKDVQDAIRDS 202 (203)
T ss_dssp THHHHHHHHTTTCEE----------EEECS-SCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCcEE----------EEECC-CCHHHHHHHHHHHHhcc
Confidence 66664 4456543 25777 69999999999988764
No 43
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.58 E-value=4.9e-15 Score=125.05 Aligned_cols=166 Identities=14% Similarity=0.144 Sum_probs=102.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCC----chhhhhhhhchhhhhhhHHHHHHHh-----h
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGT----SVAQIFKESGEAYFREYESKALQKL-----S 162 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~----~i~~~~~~~g~~~fr~~e~~~l~~l-----~ 162 (287)
+..|+|+|++||||||+++.|+..++..++|.|.++.... .+. .+.+++. .|...++......+.+. .
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~ 81 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTMA 81 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhhc
Confidence 6789999999999999999999999999999999986654 122 2333332 34444443333322211 1
Q ss_pred --cCCCeEEecCCceEeccccHH----hhc----CCcEEEEecCHHHHHHHHhhcCC-CCCCCcCCCCcchhhHHHHHHH
Q 023118 163 --LVPQQVVATGGGAVVRPLNWR----FMR----QGITVFLNVPLDALARRIAAVGT-DSFPLLDYDSADSYTKAFTALS 231 (287)
Q Consensus 163 --~~~~~via~ggG~v~~~~~~~----~L~----~g~~I~L~~~~e~l~~Ri~~~~~-~~RPll~~~~~~~~~~~~~~l~ 231 (287)
.....++..| .+.....++ .+. .+.+|||++|++.+.+|+..|+. ..||... .+ ....++.
T Consensus 82 ~~~~~~~vi~dg--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~---~~---~~~~~~~ 153 (196)
T 1tev_A 82 ANAQKNKFLIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDN---RE---SLEKRIQ 153 (196)
T ss_dssp HCTTCCEEEEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCC---HH---HHHHHHH
T ss_pred cccCCCeEEEeC--CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCC---HH---HHHHHHH
Confidence 1122333322 222222211 111 14689999999999999987642 1243221 11 1224455
Q ss_pred HHHHHHHh---hhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 232 ALSKERSE---AYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 232 ~l~~~R~~---~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
..+..+.| .|.. +++.+ ||++ .++++++++|.+.+.+
T Consensus 154 ~~~~~~~~~~~~y~~~~~~~~-----------id~~-~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 154 TYLQSTKPIIDLYEEMGKVKK-----------IDAS-KSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCEEE-----------EETT-SCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHhcCCEEE-----------EECC-CCHHHHHHHHHHHHHh
Confidence 55666666 5765 56544 6887 7999999999998865
No 44
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.56 E-value=1.7e-14 Score=125.31 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=97.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhh---hHHHH-----------
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFRE---YESKA----------- 157 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~---~e~~~----------- 157 (287)
+..|+|+|++||||||+++.|++ ++++|+|+|.++.+.. ++..+.+++...|+..|+. .+...
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~ 82 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE 82 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHH
Confidence 56899999999999999999999 8999999999986643 2334455555555544431 11100
Q ss_pred ---HHH-------------hhc-CCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCc
Q 023118 158 ---LQK-------------LSL-VPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSA 220 (287)
Q Consensus 158 ---l~~-------------l~~-~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~ 220 (287)
+.. +.. ....++..+. .....+|.. ..+.+|||++|++.+.+|+..|. ...
T Consensus 83 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~~--~l~~~~~~~-~~d~vi~l~~~~e~~~~Rl~~R~-----~~~---- 150 (218)
T 1vht_A 83 KNWLNALLHPLIQQETQHQIQQATSPYVLWVVP--LLVENSLYK-KANRVLVVDVSPETQLKRTMQRD-----DVT---- 150 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEECT--TTTTTTGGG-GCSEEEEEECCHHHHHHHHHHHH-----TCC----
T ss_pred HHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEee--eeeccCccc-cCCEEEEEECCHHHHHHHHHHcC-----CCC----
Confidence 111 111 1111111110 011112211 13689999999999999997642 111
Q ss_pred chhhHHHHHHHHHHHHHHhhhh---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 221 DSYTKAFTALSALSKERSEAYA---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 221 ~~~~~~~~~l~~l~~~R~~~Y~---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.+.+.+.+..|.+.|. .||++ ||++. ++++++++|.+.++.++.
T Consensus 151 ------~~~~~~~~~~~~~~~~~~~~ad~v------------Id~~~-~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 151 ------REHVEQILAAQATREARLAVADDV------------IDNNG-APDAIASDVARLHAHYLQ 197 (218)
T ss_dssp ------HHHHHHHHHHSCCHHHHHHHCSEE------------EECSS-CTTSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhcCChHHHHHhCCEE------------EECCC-CHHHHHHHHHHHHHHHHH
Confidence 1345556666655543 37765 47877 999999999999887654
No 45
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.56 E-value=1.7e-14 Score=123.82 Aligned_cols=156 Identities=16% Similarity=0.164 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC--CCchhhhhhhhchhhhh---hhHHHHHHHhh-------
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG--GTSVAQIFKESGEAYFR---EYESKALQKLS------- 162 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~--G~~i~~~~~~~g~~~fr---~~e~~~l~~l~------- 162 (287)
.+|+|+|++||||||+++.|++ +++.++|+|.++.+... +..+.+++...|+..|+ ..+...+..+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 3699999999999999999999 89999999999866442 33444555555555443 11221111110
Q ss_pred ---------------------cCC-CeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCc
Q 023118 163 ---------------------LVP-QQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSA 220 (287)
Q Consensus 163 ---------------------~~~-~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~ 220 (287)
... ..++..|.. ..+.++..+ .+.+|||++|++++.+|+..|+ + +.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~~--l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~R~-----~----~~ 148 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEASL--LVEKGTYKN-YDKLIVVYAPYEVCKERAIKRG-----M----SE 148 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECSC--STTTTCGGG-SSEEEEECCCHHHHHHHHHHTC-----C----CH
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEccc--cccCCchhh-CCEEEEEECCHHHHHHHHHHcC-----C----CH
Confidence 011 223333221 122222222 2689999999999999998641 1 10
Q ss_pred chhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 221 DSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 221 ~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+.+.+.+..+.+ .+..+|++ ||++ .++++++++|.+.+++...
T Consensus 149 -------~~~~~~~~~~~~~~~~~~~ad~v------------Id~~-~~~~~~~~~i~~~l~~~~~ 194 (204)
T 2if2_A 149 -------EDFERRWKKQMPIEEKVKYADYV------------IDNS-GSIEETYKQVKKVYEELTR 194 (204)
T ss_dssp -------HHHHHHHTTSCCHHHHGGGCSEE------------CCCS-SCHHHHHHHHHHHHHTTCC
T ss_pred -------HHHHHHHHhCCChhHHHhcCCEE------------EECC-CCHHHHHHHHHHHHHHHhc
Confidence 223444444443 23347754 5777 6999999999999887654
No 46
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.52 E-value=5.2e-14 Score=126.47 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=101.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc---cCCccc--cchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA---LDYTFA--DSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~---l~~~fi--d~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
+..|+|+|++||||||+++.|+.. +++.++ |+|.+.+... | |...++..++..+...++..... ..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~-~------~~~~~e~~~~~~~~~~i~~~l~~-~~v 75 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP-V------WKEKYEEFIKKSTYRLIDSALKN-YWV 75 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS-S------CCGGGHHHHHHHHHHHHHHHHTT-SEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh-h------hhHHHHHHHHHHHHHHHHHHhhC-CEE
Confidence 678999999999999999999997 788888 9988763332 3 34456777777666666655444 455
Q ss_pred EecCCceEeccccHHhhc--------CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhh
Q 023118 169 VATGGGAVVRPLNWRFMR--------QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEA 240 (287)
Q Consensus 169 ia~ggG~v~~~~~~~~L~--------~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~ 240 (287)
|..+. ......+..+. ...+|||++|++++.+|+..|+ ++. +. +.++.+.+.|+++.+.
T Consensus 76 IiD~~--~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~---~~~----~~----~~l~~~~~~~e~~~~~ 142 (260)
T 3a4m_A 76 IVDDT--NYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG---EKI----PN----EVIKKMYEKFDEPGKK 142 (260)
T ss_dssp EECSC--CCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT---CSS----CH----HHHHHHHHHCCCTTSS
T ss_pred EEeCC--cccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC---CCC----CH----HHHHHHHHHhcCcccc
Confidence 55442 22333333332 1478999999999999998754 221 11 1223333444444455
Q ss_pred hh--hCCeEEeccccccccccccCCC-CCHHHHHHHHHHHHHH
Q 023118 241 YA--NADATVSLLNLAACIGLKDVLD-ITPTTIAMEVLVQAQK 280 (287)
Q Consensus 241 Y~--~ad~~v~~~~~a~~~~~idt~~-~t~~eva~~i~~~i~~ 280 (287)
|. .++++ ||++. ++++++++.|.+.+..
T Consensus 143 ~~~~~~~~~------------Id~~~~~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 143 YKWDEPFLI------------IDTTKDIDFNEIAKKLIEKSKE 173 (260)
T ss_dssp CGGGCCSEE------------EETTSCCCHHHHHHHHHHHHTS
T ss_pred CCCCCCEEE------------EeCCCCCCHHHHHHHHHhcccC
Confidence 54 35555 47776 7999999999887653
No 47
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.50 E-value=2.1e-13 Score=114.80 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=95.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHHHHHhCCCchhhhhhhhchhhhhhh--H--HHH-------H
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYVEKLMGGTSVAQIFKESGEAYFREY--E--SKA-------L 158 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~--e--~~~-------l 158 (287)
..|+|+|++||||||+++.|+..++ ..++++|+++.+..... .+. .+.+.|+.. + ..+ +
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 76 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKL----GYA-KDRDEMRKLSVEKQKKLQIDAAKGI 76 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTT----TSC-SSHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhc----ccc-cchhhhhcCCHHHHHHHHHHHHHHH
Confidence 3799999999999999999999987 78888888775443100 000 111212111 1 111 1
Q ss_pred HHhh--cCCCeEEecCCceEecccc------HHhh---cCCcEEEEecCHHHHHHH-Hhh--cCCCCC-CCcCCCCcchh
Q 023118 159 QKLS--LVPQQVVATGGGAVVRPLN------WRFM---RQGITVFLNVPLDALARR-IAA--VGTDSF-PLLDYDSADSY 223 (287)
Q Consensus 159 ~~l~--~~~~~via~ggG~v~~~~~------~~~L---~~g~~I~L~~~~e~l~~R-i~~--~~~~~R-Pll~~~~~~~~ 223 (287)
.... .....||..|.+.+..... ...+ ....+|||++|++.+.+| +.. |+ + |.... +..
T Consensus 77 ~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~---~~~~~~~---~~~ 150 (194)
T 1nks_A 77 AEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRN---RNDYSDE---SVI 150 (194)
T ss_dssp HHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTC---CCCCCSH---HHH
T ss_pred HHHhhccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccC---CCCccCH---HHH
Confidence 2222 3345677777644333211 2222 247899999999998866 665 43 3 32221 111
Q ss_pred hHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccc-cCCCCCHHHHHHHHHHHH
Q 023118 224 TKAFTALSALSKERSEAYANADATVSLLNLAACIGLK-DVLDITPTTIAMEVLVQA 278 (287)
Q Consensus 224 ~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~i-dt~~~t~~eva~~i~~~i 278 (287)
+....+.+.|.++.+.|..+++.+ | |++ .++++++++|.+.+
T Consensus 151 -~~~~~~~~~~~~~~~~~~~~~~~~-----------I~d~~-~~~e~v~~~I~~~l 193 (194)
T 1nks_A 151 -LETINFARYAATASAVLAGSTVKV-----------IVNVE-GDPSIAANEIIRSM 193 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHTCEEEE-----------EECCS-SCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhcCCcEEE-----------EeCCC-CCHHHHHHHHHHHh
Confidence 123456677777777775444443 6 554 69999999998765
No 48
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.50 E-value=4.6e-14 Score=120.25 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=90.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhh--hhHHH--------------H
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFR--EYESK--------------A 157 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr--~~e~~--------------~ 157 (287)
...|+|+|++||||||+++.|+.. ++.|+|+|.++.+...|.+ .+++... +..|+ ..+.. .
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~-~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~~~ 84 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKE-EELKRLF-PEAVVGGRLDRRALARLVFSDPERLKA 84 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTH-HHHHHHC-GGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChH-HHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence 468999999999999999999998 9999999998765432322 2222211 12211 00111 0
Q ss_pred H-------------HHhhcC-CCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchh
Q 023118 158 L-------------QKLSLV-PQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSY 223 (287)
Q Consensus 158 l-------------~~l~~~-~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~ 223 (287)
+ ...... ...|+..+. .....++... .+.+|||++|++.+.+|+..| |... .
T Consensus 85 l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~--~l~~~~~~~~-~d~~i~l~~~~e~~~~R~~~R-----~~~~---~--- 150 (203)
T 1uf9_A 85 LEAVVHPEVRRLLMEELSRLEAPLVFLEIP--LLFEKGWEGR-LHGTLLVAAPLEERVRRVMAR-----SGLS---R--- 150 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCSEEEEECT--TTTTTTCGGG-SSEEEEECCCHHHHHHHHHTT-----TCCT---T---
T ss_pred HHHHhChHHHHHHHHHhhhcCCCEEEEEec--ceeccCchhh-CCEEEEEECCHHHHHHHHHHc-----CCCC---H---
Confidence 1 111111 122322221 1111112111 268999999999999999753 2111 0
Q ss_pred hHHHHHHHHHHHHHHhhh---hhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 224 TKAFTALSALSKERSEAY---ANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 224 ~~~~~~l~~l~~~R~~~Y---~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+.+.+.+..+.+.| ..+|++ ||++. ++++++++|.+.+..++.
T Consensus 151 ----~~~~~~i~~~~~~~~~~~~ad~v------------Id~~~-~~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 151 ----EEVLARERAQMPEEEKRKRATWV------------LENTG-SLEDLERALKAVLAELTG 196 (203)
T ss_dssp ----HHHHHHHTTSCCHHHHHHHCSEE------------ECCSS-HHHHHHHHHHHHHHSCCC
T ss_pred ----HHHHHHHHHCCChhHHHHhCCEE------------EECCC-CHHHHHHHHHHHHHHHHh
Confidence 12333333343333 347764 47777 999999999998876554
No 49
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.49 E-value=1.4e-13 Score=117.01 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=55.1
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh-h-CCeEEeccccccccccccCCCC
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA-N-ADATVSLLNLAACIGLKDVLDI 265 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~-~-ad~~v~~~~~a~~~~~idt~~~ 265 (287)
+.+|||++|++++.+|+..++ ||+....+ . +..+.+.+.|..+.+.|. . ++++ ||++.
T Consensus 126 d~vi~L~~~~e~~~~Rl~~R~---r~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~~~------------Id~~~- 185 (205)
T 2jaq_A 126 DIVIYLRVSTKTAISRIKKRG---RSEELLIG-E---EYWETLNKNYEEFYKQNVYDFPFFV------------VDAEL- 185 (205)
T ss_dssp SEEEEEECCHHHHHHHHHHHT---CHHHHHSC-H---HHHHHHHHHHHHHHHHHTTTSCEEE------------EETTS-
T ss_pred CEEEEEeCCHHHHHHHHHHcC---ChhhhcCc-H---HHHHHHHHHHHHHHHHccccCcEEE------------EECCC-
Confidence 689999999999999998763 66543111 1 224567788888888885 3 5555 47776
Q ss_pred CHHHHHHHHHHHHHHHh
Q 023118 266 TPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 266 t~~eva~~i~~~i~~~l 282 (287)
++++++.+|.+.+.++.
T Consensus 186 ~~~~v~~~I~~~l~~~~ 202 (205)
T 2jaq_A 186 DVKTQIELIMNKLNSIK 202 (205)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987644
No 50
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.47 E-value=2.3e-14 Score=130.06 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=61.8
Q ss_pred CCccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 62 NAHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 62 ~~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
|.++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++..
T Consensus 8 ~~~~l~~~~l~~~~~~~~vL~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~---~~g~~~~~ 77 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQQALINDVSLHIAS---GEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECH---LLGQNLNS 77 (266)
T ss_dssp CCCEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEE---ETTEETTT
T ss_pred CcceEEEEeEEEEeCCeeEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEE---ECCEECCc
Confidence 34579999999999999999999999999 999999999999999999999999998 677665 46766543
No 51
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.46 E-value=1.6e-14 Score=125.38 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=95.4
Q ss_pred eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC------CccccchhHHHHHhCCCchhh-hhhhhchhhhhhhHHHHH
Q 023118 86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALD------YTFADSDKYVEKLMGGTSVAQ-IFKESGEAYFREYESKAL 158 (287)
Q Consensus 86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~------~~fid~d~~ie~~~~G~~i~~-~~~~~g~~~fr~~e~~~l 158 (287)
+.+.+ |..|+|+|++||||||+++.|++.++ ..++|+|.+.. +.+... ++...+...++.... .+
T Consensus 20 ~~~~~---~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~----~l~~~~~~~~~~r~~~~~~~~~-~~ 91 (211)
T 1m7g_A 20 LRNQR---GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF----GLNKDLGFSEADRNENIRRIAE-VA 91 (211)
T ss_dssp HHTSS---CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT----TTTTTCCSSHHHHHHHHHHHHH-HH
T ss_pred ccCCC---CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhh----hhccccCCCHHHHHHHHHHHHH-HH
Confidence 34556 89999999999999999999999887 67788777652 222111 222344455554432 23
Q ss_pred HHhhcCCCeEEecCCceEeccccHHhhc-------C-------CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118 159 QKLSLVPQQVVATGGGAVVRPLNWRFMR-------Q-------GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT 224 (287)
Q Consensus 159 ~~l~~~~~~via~ggG~v~~~~~~~~L~-------~-------g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~ 224 (287)
.........||++.. ... ..+++.+. . ..+|||++|++++.+|+ .||++..
T Consensus 92 ~~~l~~g~~VI~d~~-~~~-~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~------~r~~~~~------- 156 (211)
T 1m7g_A 92 KLFADSNSIAITSFI-SPY-RKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD------PKGLYKK------- 156 (211)
T ss_dssp HHHHHTTCEEEEECC-CCC-HHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC------TTCHHHH-------
T ss_pred HHHHHCCCEEEEecC-Ccc-HHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh------hHHHHHH-------
Confidence 333333455666632 211 12233222 1 47899999999999995 2343210
Q ss_pred HHHHHHHHHHHHHHhhhhh---CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 225 KAFTALSALSKERSEAYAN---ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 225 ~~~~~l~~l~~~R~~~Y~~---ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
..+...++++.+.+.|+. ++++ ||++.+++++++++|++.+..
T Consensus 157 -~r~~~~~~~~~~~~~y~~~~~~~~~------------IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 157 -AREGVIKEFTGISAPYEAPANPEVH------------VKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp -HHHTSSSSCBTTTBCCCCCSSCSEE------------EECSSSCHHHHHHHHHHHHHH
T ss_pred -HHhcchhhhhhhhhhccCCCCCeEE------------EECCCCCHHHHHHHHHHHHHH
Confidence 001011112234455542 3433 689989999999999999875
No 52
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.45 E-value=3e-14 Score=128.36 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=59.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~---~~g~~~ 71 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNK---GDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVY---FENKDI 71 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEE---ECCEEC
Confidence 479999999999998999999999999 999999999999999999999999998 677664 456554
No 53
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.45 E-value=2.8e-14 Score=126.04 Aligned_cols=67 Identities=24% Similarity=0.272 Sum_probs=59.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++++|+++.|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~~ 69 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKK---GEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVF---LEGKEVD 69 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEE---ETTEECC
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE---ECCEECC
Confidence 369999999999988999999999999 999999999999999999999999998 677765 4676553
No 54
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.45 E-value=3.7e-14 Score=126.53 Aligned_cols=66 Identities=21% Similarity=0.286 Sum_probs=59.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~ 70 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPR---GQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKII---FNGQDI 70 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEE---ECCEEC
Confidence 479999999999988999999999999 999999999999999999999999988 677664 456554
No 55
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.44 E-value=4.4e-14 Score=127.76 Aligned_cols=66 Identities=17% Similarity=0.272 Sum_probs=58.7
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~---~~g~~~ 70 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARA---GDVISIIGSSGSGKSTFLRCINFLEKP---SEGAII---VNGQNI 70 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEc
Confidence 369999999999988999999999999 999999999999999999999999998 566664 356544
No 56
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.42 E-value=6.9e-14 Score=126.23 Aligned_cols=61 Identities=26% Similarity=0.272 Sum_probs=55.6
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~---Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~ 73 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEE---GEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVT 73 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcC---CcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEE
Confidence 3579999999999989999999999999 999999999999999999999999988 566553
No 57
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.42 E-value=9.6e-14 Score=117.50 Aligned_cols=163 Identities=17% Similarity=0.102 Sum_probs=94.7
Q ss_pred eccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc--cccchhHHHHHhCCCchhhhhhhhchhhhhhhHH--HHHHHhhc
Q 023118 88 VASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT--FADSDKYVEKLMGGTSVAQIFKESGEAYFREYES--KALQKLSL 163 (287)
Q Consensus 88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~--fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~--~~l~~l~~ 163 (287)
+.+ |++++|+|||||||||++++|++.++.. ++|+|.+..... ...+..++.+.+.....-.+. ........
T Consensus 6 i~~---g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 6 DLG---GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIK-HGRIDPWLPQSHQQNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp CCT---TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCC-SSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhh-cccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence 556 9999999999999999999999987655 788888763322 212222222222111000000 00111111
Q ss_pred CCCeEEecCCceEeccccHHhhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHh
Q 023118 164 VPQQVVATGGGAVVRPLNWRFMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSE 239 (287)
Q Consensus 164 ~~~~via~ggG~v~~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~ 239 (287)
....++..+ . ........+. ....+|+..+.+.+..|+..++ +|++. ++ +.+.++++.+.+
T Consensus 82 ~~~~~~~~~--~-~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~---~~~ll----d~-----~~~~~~~~~~~~ 146 (191)
T 1zp6_A 82 EGYFVILDG--V-VRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRG---GDSLS----DP-----LVVADLHSQFAD 146 (191)
T ss_dssp TSCEEEECS--C-CCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTC---TTSCC----CH-----HHHHHHHHHTTC
T ss_pred cCCeEEEec--c-CcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC---CCccC----CH-----HHHHHHHHHHhc
Confidence 111122111 0 1111222222 2357999999999999998653 34442 11 345667777888
Q ss_pred hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 240 AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 240 ~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+|..++.+ |||++.++++++++|++.+...
T Consensus 147 l~~~~~~~------------i~t~~~~~~~~~~~i~~~l~~~ 176 (191)
T 1zp6_A 147 LGAFEHHV------------LPVSGKDTDQALQSAINALQSG 176 (191)
T ss_dssp CGGGGGGE------------EECTTCCTTTTTTTTHHHHHHT
T ss_pred cCcccccE------------EECCCCCHHHHHHHHHHHHHhh
Confidence 87655544 4788789999999999888653
No 58
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.42 E-value=7.8e-14 Score=124.41 Aligned_cols=165 Identities=14% Similarity=0.056 Sum_probs=92.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCc----------cccchhHHHHHhCCCchhhhhhhhchhhhhhhH-------HH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYT----------FADSDKYVEKLMGGTSVAQIFKESGEAYFREYE-------SK 156 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~----------fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e-------~~ 156 (287)
..+|+|+|++||||||+++.|+..++.+ ++++|.++.... ...+. +...|.-.|...+ .+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~-~~~~~--~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLT-SEQKA--KALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCC-HHHHH--HHHTTCSCTTSGGGBCHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccC-hhhhh--hhccCCCCCCCcchhhHHHHHH
Confidence 3579999999999999999999999988 688998862110 00010 1112222222221 13
Q ss_pred HHHHhhc------------------------CCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCC
Q 023118 157 ALQKLSL------------------------VPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSF 212 (287)
Q Consensus 157 ~l~~l~~------------------------~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~R 212 (287)
.+..+.. ....+|..|......+..... -+.+|||++|++.+.+|+..|....+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~--~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDL--FQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHH--CSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHh--cCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 4554431 122344444321111111111 26899999999999999976521001
Q ss_pred CCcCCCCcchhhHHHHHHHHHHHHHH---------hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 213 PLLDYDSADSYTKAFTALSALSKERS---------EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 213 Pll~~~~~~~~~~~~~~l~~l~~~R~---------~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
. ... +.+.+.+..|. |.+..||+++. ..||+ +.++++++++|.+.+...++
T Consensus 177 g-------~~~----e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~--------~~id~-~~s~e~v~~~I~~~l~~~~~ 236 (252)
T 1uj2_A 177 G-------RDL----EQILSQYITFVKPAFEEFCLPTKKYADVIIP--------RGADN-LVAINLIVQHIQDILNGGPS 236 (252)
T ss_dssp C-------CCH----HHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE--------TGGGC-HHHHHHHHHHHHHHHHC---
T ss_pred C-------CCH----HHHHHHHHHhccHHHHHHhhhhhhcCcEEEe--------cCCCC-hhHHHHHHHHHHHHHccchh
Confidence 1 111 22223333222 44555888762 12577 67999999999999886654
No 59
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.42 E-value=7.3e-14 Score=126.59 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=58.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~---Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIRE---GEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEII---IDGINL 88 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEES
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEE---ECCEEC
Confidence 69999999999988999999999999 999999999999999999999999988 667664 456544
No 60
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.42 E-value=8.1e-14 Score=127.26 Aligned_cols=66 Identities=26% Similarity=0.256 Sum_probs=59.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~---Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~~ 85 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAK---GDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVN---LFGKMP 85 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTBCC
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEE---ECCEEc
Confidence 479999999999988999999999999 999999999999999999999999998 667664 456554
No 61
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.41 E-value=9e-14 Score=132.27 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=58.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+|+++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+. ++|.++
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~---i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHE---GEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLF---IGEKRM 67 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECC---CCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEE---ECCEEC
Confidence 58999999999999999999999999 999999999999999999999999998 677664 355544
No 62
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.41 E-value=6.1e-14 Score=124.85 Aligned_cols=67 Identities=16% Similarity=0.193 Sum_probs=58.7
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
+++++|++++|+. ..+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~---Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~---~~g~~~~~ 71 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKE---GEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVY---IDNIKTND 71 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEECTT
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEE---ECCEEccc
Confidence 4789999999963 4699999999999 999999999999999999999999999 677765 46766644
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.41 E-value=9e-14 Score=122.35 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=58.4
Q ss_pred CccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 63 AHDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 63 ~~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
.++|+++|+++.|++ .+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~---Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~~ 73 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEK---GNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEII---YNGVPI 73 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEET---TCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEG
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEE---ECCEEh
Confidence 357999999999998 999999999999 999999999999999999999999988 577665 456554
No 64
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.41 E-value=8.2e-14 Score=131.89 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=57.6
Q ss_pred CcCCCCCCCccEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHH
Q 023118 55 AHVSKDSNAHDVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVE 130 (287)
Q Consensus 55 ~~~~~~~~~~~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie 130 (287)
.|...+.+.++|+++|+++.|+. ..+|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+.
T Consensus 14 ~~~~~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~---Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~- 86 (366)
T 3tui_C 14 SGHIDDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPA---GQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVL- 86 (366)
T ss_dssp ---------CCEEEEEEEEEEECSSSEEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE-
T ss_pred CCCCCCCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcC---CCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEE-
Confidence 34444445568999999999953 5799999999999 999999999999999999999999998 667664
Q ss_pred HHhCCCch
Q 023118 131 KLMGGTSV 138 (287)
Q Consensus 131 ~~~~G~~i 138 (287)
++|.++
T Consensus 87 --i~G~~i 92 (366)
T 3tui_C 87 --VDGQEL 92 (366)
T ss_dssp --ETTEEC
T ss_pred --ECCEEC
Confidence 345544
No 65
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.40 E-value=1.1e-13 Score=130.83 Aligned_cols=65 Identities=25% Similarity=0.410 Sum_probs=58.8
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+|+++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+. ++|.++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~---i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDP---GEILFIIGASGCGKTTLLRCLAGFEQP---DSGEIS---LSGKTI 68 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEE---ECCEEC
Confidence 69999999999999999999999999 999999999999999999999999999 677664 456554
No 66
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.40 E-value=5.4e-13 Score=113.13 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=86.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC-ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY-TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATG 172 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~-~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~g 172 (287)
|++++|+|||||||||+++.|++.++. .|+++|.+.+....|.-............++..+. .++........++..+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD-LTVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHH-HHHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHH-HHHHHHhcCCcEEEee
Confidence 678999999999999999999997765 68898887632211211111101111222332222 2222222222344433
Q ss_pred C-ceEeccccHHhhc------CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCC
Q 023118 173 G-GAVVRPLNWRFMR------QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANAD 245 (287)
Q Consensus 173 g-G~v~~~~~~~~L~------~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad 245 (287)
- +........++++ +..++||++|++++.+|+..+... +.+ ++ ..+.+ ++.+.+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d--~~l-----d~-----~~~~~-~~~~~~~~~~~~ 147 (189)
T 2bdt_A 81 IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKD--EQM-----GE-----RCLEL-VEEFESKGIDER 147 (189)
T ss_dssp CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----------CG-----GGGHH-HHHHHHTTCCTT
T ss_pred ccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhcccc--ccC-----CH-----HHHHH-HHHHhhcCCCcc
Confidence 1 1100011122322 134689999999999998754311 111 11 11234 566667765544
Q ss_pred eEEeccccccccccccCCCC---CHHHHHHHHH
Q 023118 246 ATVSLLNLAACIGLKDVLDI---TPTTIAMEVL 275 (287)
Q Consensus 246 ~~v~~~~~a~~~~~idt~~~---t~~eva~~i~ 275 (287)
.+ |+|++. +++++++.|+
T Consensus 148 ~i------------i~tsh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 148 YF------------YNTSHLQPTNLNDIVKNLK 168 (189)
T ss_dssp SE------------EECSSSCGGGHHHHHHHHH
T ss_pred EE------------EeCCCCChhhHHHHHHHHh
Confidence 44 478888 8999999988
No 67
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.40 E-value=9.4e-14 Score=126.68 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=57.8
Q ss_pred ccEEEcceEEEcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 64 HDVESGTFCDSLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 64 ~~l~~~~l~~~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++++++|++++|++ ..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~---Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~---~~G~~i 72 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKR---GEVTAILGGNGVGKSTLFQNFNGILKP---SSGRIL---FDNKPI 72 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEET---TSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEE---ECCEEC
Confidence 47999999999974 5699999999999 999999999999999999999999998 567664 456554
No 68
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.40 E-value=1.6e-12 Score=112.48 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=92.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhh---------------hhhHH-HH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYF---------------REYES-KA 157 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~f---------------r~~e~-~~ 157 (287)
...|+|+|++||||||+++.|+..+|++++|+|.++++.. +..+.+++...|++.| +..+. ..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~-~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~ 90 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL-EEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKK 90 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH-HHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH-HHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHH
Confidence 5689999999999999999999999999999999987766 4455555555565543 22221 11
Q ss_pred HHH-------------hhcCCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118 158 LQK-------------LSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT 224 (287)
Q Consensus 158 l~~-------------l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~ 224 (287)
+.. +......|+..+.. ..+..+..+ -+.+||+++|++++.+|+ ..
T Consensus 91 l~~i~hP~i~~~~~~~~~~~~~~vv~d~pl--l~e~~~~~~-~d~vi~v~a~~e~r~~Rl----------i~-------- 149 (192)
T 2grj_A 91 LELLVHPLMKKRVQEIINKTSGLIVIEAAL--LKRMGLDQL-CDHVITVVASRETILKRN----------RE-------- 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECTT--TTTTTGGGG-CSEEEEEECCHHHHHHHC----------SS--------
T ss_pred HHhhhCHHHHHHHHHHHHHcCCEEEEEEec--eeecChHHh-CCEEEEEECCHHHHHHHH----------HH--------
Confidence 111 11111223332221 112222211 268999999999999996 10
Q ss_pred HHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 225 KAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 225 ~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
.++..+ .++.++.||++| |++ .+++++..+|.+.++++
T Consensus 150 ---~q~~~~---~~~~~~~AD~vI------------~n~-~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 150 ---ADRRLK---FQEDIVPQGIVV------------ANN-STLEDLEKKVEEVMKLV 187 (192)
T ss_dssp ---HHHHHT---TCTTCCCCSEEE------------ECS-SCHHHHHHHHHHHHHHH
T ss_pred ---hcCCch---hhhHHhcCCEEE------------ECC-CCHHHHHHHHHHHHHHH
Confidence 112111 123345588876 555 48999999998888765
No 69
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.39 E-value=1.1e-13 Score=123.61 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=56.7
Q ss_pred cEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.| ++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~ 66 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQP---NSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEIT---IDGQPI 66 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECT---TEEEEEECCTTSSHHHHHHHHTTSSCC---SBSCEE---ETTEES
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEh
Confidence 47899999999 667899999999999 999999999999999999999999988 566664 355444
No 70
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.39 E-value=1.1e-13 Score=124.19 Aligned_cols=65 Identities=28% Similarity=0.493 Sum_probs=56.2
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc--cCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA--LDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~--l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|++++|++..+|+++||++.+ |++++|+||||||||||+++|+|. +.| ++|.+. ++|.++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~---~~g~~~ 69 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPK---GEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEIL---LDGENI 69 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEE---ETTEEC
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEE---ECCEEC
Confidence 68999999999988999999999999 999999999999999999999998 455 566554 345444
No 71
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.39 E-value=2.3e-12 Score=108.55 Aligned_cols=160 Identities=19% Similarity=0.175 Sum_probs=89.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc---CCccccchhHHHHHhCCCchhhhhhhhch------hhhhhhHH-H----HHHHh
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL---DYTFADSDKYVEKLMGGTSVAQIFKESGE------AYFREYES-K----ALQKL 161 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d~~ie~~~~G~~i~~~~~~~g~------~~fr~~e~-~----~l~~l 161 (287)
.|+|.|++||||||+++.|+..+ +++++++|....... |..+.+++.. |. ..|...+. + .+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~-~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~~ 79 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKV-GEVLREILLT-EELDERTELLLFEASRSKLIEEKIIPD 79 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHH-HHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCch-HHHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988 899999764210001 2222233221 21 01111111 1 12222
Q ss_pred hcCCCeEEec----------CCceEeccccHH----hhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchh
Q 023118 162 SLVPQQVVAT----------GGGAVVRPLNWR----FMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSY 223 (287)
Q Consensus 162 ~~~~~~via~----------ggG~v~~~~~~~----~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~ 223 (287)
......|+.. |++......... ++. ...+|||++|++++.+|+..+ +... ..
T Consensus 80 l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r-----~~~~---~~-- 149 (195)
T 2pbr_A 80 LKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEK-----NRFE---NK-- 149 (195)
T ss_dssp HHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTT-----TCCC---CH--
T ss_pred HhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhcc-----Cccc---hH--
Confidence 2234455554 443333221111 122 368999999999999999742 2121 11
Q ss_pred hHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 224 TKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 224 ~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
+..+++.+.|.+..+.| ...++ ||++ .++++++++|.+.+.+++
T Consensus 150 -~~~~~~~~~~~~~~~~~-~~~~~------------Id~~-~~~~~~~~~i~~~l~~~l 193 (195)
T 2pbr_A 150 -EFLEKVRKGFLELAKEE-ENVVV------------IDAS-GEEEEVFKEILRALSGVL 193 (195)
T ss_dssp -HHHHHHHHHHHHHHHHS-TTEEE------------EETT-SCHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHHHhhC-CCEEE------------EECC-CCHHHHHHHHHHHHHHHh
Confidence 12344444444444433 11133 5774 699999999999988765
No 72
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.38 E-value=1.8e-13 Score=129.25 Aligned_cols=59 Identities=20% Similarity=0.193 Sum_probs=55.1
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~ 61 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKD---GEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIY 61 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcC---CCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEE
Confidence 58999999999998999999999999 999999999999999999999999998 667664
No 73
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.38 E-value=4.4e-13 Score=113.53 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC-----ccccchhHHHHHhCCCchhhhhhhhc-hhhhhhhHHHHHHHhhcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY-----TFADSDKYVEKLMGGTSVAQIFKESG-EAYFREYESKALQKLSLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~-----~fid~d~~ie~~~~G~~i~~~~~~~g-~~~fr~~e~~~l~~l~~~~~~ 167 (287)
|..|+|+|++||||||+++.|++.++. .|+|+|.+.+...++. .|.... ...++.. ....+.+.. .+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~r~~~~~~~-~~~~~~~~~-~g~ 86 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGA----GFTREERLRHLKRI-AWIARLLAR-NGV 86 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTC----CCCHHHHHHHHHHH-HHHHHHHHT-TTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhcc----CCChhhHHHHHHHH-HHHHHHHHh-CCC
Confidence 899999999999999999999998863 5678887642222111 011000 0111110 111222222 333
Q ss_pred EEecCCceEe---ccccHHhhc----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhh
Q 023118 168 VVATGGGAVV---RPLNWRFMR----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEA 240 (287)
Q Consensus 168 via~ggG~v~---~~~~~~~L~----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~ 240 (287)
++.+++.... .+..+..+. ...+|||++|++++.+|+... +...... ..+..++..|.+
T Consensus 87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~------~~~~~~~-------~~~~~~~~~~~~- 152 (186)
T 2yvu_A 87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKG------LYKKALK-------GELENFTGITDP- 152 (186)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHH------HHHHHHT-------TCCSSCHHHHSC-
T ss_pred EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhh------hhhHHhh-------cchhhhhhhhhc-
Confidence 4444443221 122233333 257899999999999997421 1000000 001111223444
Q ss_pred hh---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 023118 241 YA---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYL 282 (287)
Q Consensus 241 Y~---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l 282 (287)
|+ .++++ ||+++.++++++++|++.+...+
T Consensus 153 y~~~~~~~~~------------Id~~~~~~~ev~~~I~~~l~~~~ 185 (186)
T 2yvu_A 153 YEPPENPQLV------------LDTESNTIEHNVSYLYSLVKAVI 185 (186)
T ss_dssp CCCCSSCSEE------------EETTTSCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCcEE------------EECCCCCHHHHHHHHHHHHHHhc
Confidence 65 24544 58888899999999999998764
No 74
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.38 E-value=6.1e-13 Score=111.99 Aligned_cols=152 Identities=18% Similarity=0.149 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc---CCccccch--hHHHHHhCCCchhhhh-hhhchhhhhhhHHHHHHHhhcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL---DYTFADSD--KYVEKLMGGTSVAQIF-KESGEAYFREYESKALQKLSLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d--~~ie~~~~G~~i~~~~-~~~g~~~fr~~e~~~l~~l~~~~~~ 167 (287)
|..|+|+|++||||||+++.|++.+ ++++++.| .+- . +......+ ...++..|++.+. ....+.. ...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 78 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR-Q---GLNKNLGFSPEDREENVRRIAE-VAKLFAD-AGL 78 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHT-T---TTTTTCCSSHHHHHHHHHHHHH-HHHHHHH-TTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHH-H---HHhhccccccccHHHHHHHHHH-HHHHHHH-CCC
Confidence 8999999999999999999999988 88887443 332 1 11111111 1344555655443 1111222 233
Q ss_pred EEecCCce-Ee---ccccHHhhc-CC---cEEEEecCHHHHHHHHhhcC--CCCCCCcCCCCcchhhHHHHHHHHHHHHH
Q 023118 168 VVATGGGA-VV---RPLNWRFMR-QG---ITVFLNVPLDALARRIAAVG--TDSFPLLDYDSADSYTKAFTALSALSKER 237 (287)
Q Consensus 168 via~ggG~-v~---~~~~~~~L~-~g---~~I~L~~~~e~l~~Ri~~~~--~~~RPll~~~~~~~~~~~~~~l~~l~~~R 237 (287)
++ ++++. +. ...++.++. .+ .+|||++|++++.+|+..+. ...+|.+... ...
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~----------------~~~ 141 (179)
T 2pez_A 79 VC-ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF----------------TGI 141 (179)
T ss_dssp EE-EEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSC----------------BTT
T ss_pred EE-EEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhccccccc----------------ccC
Confidence 33 33332 21 122223333 24 68999999999999975310 0012222110 001
Q ss_pred Hhhhh---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 238 SEAYA---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 238 ~~~Y~---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
.+.|+ .+|++ ||+++.++++++++|.+.+++
T Consensus 142 ~~~~~~~~~ad~v------------id~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 142 DSEYEKPEAPELV------------LKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp TBCCCCCSSCSEE------------EETTTSCHHHHHHHHHHHHHH
T ss_pred CccccCCCCCcEE------------EECCCCCHHHHHHHHHHHHHH
Confidence 12232 25554 478888999999999998864
No 75
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.38 E-value=7e-12 Score=110.61 Aligned_cols=166 Identities=18% Similarity=0.231 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-CCch----hhhhhhhchh----hhhhhHHHHHHHhhcC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-GTSV----AQIFKESGEA----YFREYESKALQKLSLV 164 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G~~i----~~~~~~~g~~----~fr~~e~~~l~~l~~~ 164 (287)
..+|+|+||+||||+|+++.|+..+++.+|++|+++.+... +..+ .++. ..|.- ..-..-.+.+.+....
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~-~~G~lVpde~~~~lv~~~l~~~~~~ 107 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMM-ERGELVPLEVVLALLKEAMIKLVDK 107 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHHHHHTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcccc
Confidence 67899999999999999999999999999999999877653 3222 2221 22221 1111111122222222
Q ss_pred CCeEEecCCceEeccccH---Hhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 165 PQQVVATGGGAVVRPLNW---RFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 165 ~~~via~ggG~v~~~~~~---~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
...++-.| .|.+. ..|. -..+|+|++|.+++.+|+..|.. ......|.-+....++..-.++
T Consensus 108 ~~g~ilDG-----fPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~-----~~~R~DD~~e~i~~Rl~~Y~~~ 177 (217)
T 3umf_A 108 NCHFLIDG-----YPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE-----TSNRVDDNEETIVKRFRTFNEL 177 (217)
T ss_dssp CSEEEEET-----BCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred ccCccccc-----CCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc-----cCCCCCCCHHHHHHHHHHHHHH
Confidence 33344443 12322 2221 26899999999999999976531 1111122221112233222222
Q ss_pred HH---hhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 237 RS---EAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 237 R~---~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
-. ..|++.+..+. ||.+. ++++|.++|.+.++++
T Consensus 178 t~pl~~~Y~~~~~l~~----------Idg~~-~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 178 TKPVIEHYKQQNKVIT----------IDASG-TVDAIFDKVNHELQKF 214 (217)
T ss_dssp THHHHHHHHTTTCEEE----------EETTS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEE----------EECCC-CHHHHHHHHHHHHHHc
Confidence 22 35665443332 67764 9999999999999864
No 76
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.38 E-value=4.5e-12 Score=109.86 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=67.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-----CCCchhhhhhhhchhhhhhhHHHHHHHhhcCC---Ce
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-----GGTSVAQIFKESGEAYFREYESKALQKLSLVP---QQ 167 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-----~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~---~~ 167 (287)
.|+|+|++||||||+++.|+..+++.++++|+++.+.. .|..+.+++.. |..........++....... ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDA-GKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHC-CCcCCHHHHHHHHHHHHhccccCCC
Confidence 58999999999999999999999999999999987742 24455555432 22111122222333221111 12
Q ss_pred EEecCCceEeccccHHhhc-C----CcEEEEecCHHHHHHHHhhcC
Q 023118 168 VVATGGGAVVRPLNWRFMR-Q----GITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 168 via~ggG~v~~~~~~~~L~-~----g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
++..|- .........|. . ..+|||++|++.+.+|+..|.
T Consensus 81 ~i~dg~--~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 81 FLLDGF--PRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp EEEESC--CCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred EEEeCC--CCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 333331 11111122232 1 479999999999999998653
No 77
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.38 E-value=1.9e-13 Score=122.54 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=58.1
Q ss_pred cEEEcceEEEc--CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~--~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.++++|++++| ++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~---i~g~~~~ 74 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQ---GEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVL---IDGHDLA 74 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEETT
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEE---ECCEEhh
Confidence 47899999999 467899999999999 999999999999999999999999998 577665 4676654
No 78
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.38 E-value=1.7e-13 Score=124.20 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=57.3
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCCchh
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~~i~ 139 (287)
++++++|+++.|++..+|+++||++.+ |++++|+||||||||||+++|+|.+ .| ++|.+. ++|.++.
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p---~~G~I~---~~g~~i~ 87 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHP---GEVHAIMGPNGSGKSTLSATLAGREDYEV---TGGTVE---FKGKDLL 87 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTCTTCEE---EEEEEE---ETTEEGG
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCCCC---CCeEEE---ECCEECC
Confidence 479999999999988999999999999 9999999999999999999999985 34 566654 4565553
No 79
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.37 E-value=2.2e-13 Score=123.75 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=59.2
Q ss_pred ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.+++++||++.|++ ..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~---~~g~~i~ 84 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYP---GKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVL---LDGEPLV 84 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEGG
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEE---ECCEEcc
Confidence 46999999999976 7899999999999 999999999999999999999999998 677664 4676653
No 80
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.37 E-value=2.3e-13 Score=128.77 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=54.9
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~ 61 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKD---GEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIY 61 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECC---CCEEEEECCCCchHHHHHHHHhcCCCC---CceEEE
Confidence 58999999999988899999999999 999999999999999999999999998 566653
No 81
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.37 E-value=9.4e-12 Score=107.43 Aligned_cols=107 Identities=15% Similarity=0.234 Sum_probs=65.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEe
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQKLSLVPQQVVA 170 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via 170 (287)
+|+|+|++||||||+++.|+..++..+++.|.++.+.. .|.. +.+++. .|...........+.+..... .
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~----~ 76 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMD-QGNLVPDEVTIGIVHERLSKD----D 76 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHTSG----G
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcc----c
Confidence 58999999999999999999999999999999987754 2322 222322 122111222222333222111 1
Q ss_pred cCCceEec--cccH---Hhh----c-----CCcEEEEecCHHHHHHHHhhc
Q 023118 171 TGGGAVVR--PLNW---RFM----R-----QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 171 ~ggG~v~~--~~~~---~~L----~-----~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
++.+.+++ +... ..+ . -..+|||++|++.+.+|+..|
T Consensus 77 ~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 77 CQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 13333333 2221 111 1 147899999999999999876
No 82
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.37 E-value=2.9e-13 Score=128.49 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=55.1
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~ 69 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKD---GEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIY 69 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECT---TCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECC---CCEEEEECCCCChHHHHHHHHHcCCCC---CceEEE
Confidence 59999999999998999999999999 999999999999999999999999998 566653
No 83
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.36 E-value=7.1e-12 Score=107.98 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=86.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC-----------------------CccccchhHHHHHhCCCchhhhhhhhchhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD-----------------------YTFADSDKYVEKLMGGTSVAQIFKESGEAYF 150 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~-----------------------~~fid~d~~ie~~~~G~~i~~~~~~~g~~~f 150 (287)
|..|+|+|||||||||+++.|+..++ +.|++.+.+.+....|.-+ +.....|..+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 90 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL-EFDKYANNFYG 90 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE-EEEEETTEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE-EeHHhCCCeec
Confidence 89999999999999999999998773 3345555554333333221 11111122111
Q ss_pred hhhHHHHHHHhhcCCCeEEecCCceEeccccHHhh----c--CCcEEEEe-cCHHHHHHHHhhcCCCCCCCcCCCCcchh
Q 023118 151 REYESKALQKLSLVPQQVVATGGGAVVRPLNWRFM----R--QGITVFLN-VPLDALARRIAAVGTDSFPLLDYDSADSY 223 (287)
Q Consensus 151 r~~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L----~--~g~~I~L~-~~~e~l~~Ri~~~~~~~RPll~~~~~~~~ 223 (287)
.. .+.++.+......||..+. +.....+ . ..++|||+ +|++.+.+|+..|+. . +.
T Consensus 91 ~~--~~~i~~~l~~g~~vi~d~~-----~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~-----~---~~--- 152 (204)
T 2qor_A 91 TL--KSEYDLAVGEGKICLFEMN-----INGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT-----E---KP--- 152 (204)
T ss_dssp EE--HHHHHHHHHTTCEEEEECC-----HHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT-----S---CH---
T ss_pred CC--HHHHHHHHHcCCeEEEEEC-----HHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC-----C---CH---
Confidence 11 1223333222223333211 1112222 2 34789999 999999999986541 0 11
Q ss_pred hHHHHHHH-HHHHHHHhh---hhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 224 TKAFTALS-ALSKERSEA---YAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 224 ~~~~~~l~-~l~~~R~~~---Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+.+. .+...|.++ |.. +|.+| +++ ++++++++|.+.|...+.
T Consensus 153 ----~~i~~rl~~~~~~~~~~~~~~~d~vi------------~n~--~~e~~~~~i~~~i~~~~~ 199 (204)
T 2qor_A 153 ----EEINKRMQELTREMDEADKVGFNYFI------------VND--DLARTYAELREYLLGSYP 199 (204)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCSEEE------------ECS--SHHHHHHHHHHHHHHHCT
T ss_pred ----HHHHHHHHHHHHHHHHhhhccCcEEE------------ECc--CHHHHHHHHHHHHHHHhh
Confidence 1222 233344454 554 78765 333 899999999999987654
No 84
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.36 E-value=5.7e-12 Score=110.37 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=68.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhC-C----CchhhhhhhhchhhhhhhHHHHHHHhhcC--CCeE
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMG-G----TSVAQIFKESGEAYFREYESKALQKLSLV--PQQV 168 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~-G----~~i~~~~~~~g~~~fr~~e~~~l~~l~~~--~~~v 168 (287)
.|+|+|++||||||+++.|+..++..++++|+++.+... | ..+.+++. .|.-.++......+...... ...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~v 80 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDGW 80 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCeE
Confidence 689999999999999999999999999999999877632 2 22333332 34333344344444432221 2223
Q ss_pred EecCCceEecccc---HHhh----c-----CCcEEEEecCHHHHHHHHhhcC
Q 023118 169 VATGGGAVVRPLN---WRFM----R-----QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 169 ia~ggG~v~~~~~---~~~L----~-----~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
+..|- +.+ ...| . -..+|||++|++.+.+|+..|+
T Consensus 81 IlDg~-----~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 81 LLDGF-----PRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp EEESC-----CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred EEeCC-----cCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 33321 222 1222 1 1479999999999999998774
No 85
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.36 E-value=2.9e-13 Score=128.45 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=55.0
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|++++|++..+|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~ 61 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKD---GEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIY 61 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcC---CCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEE
Confidence 58999999999998999999999999 999999999999999999999999998 566654
No 86
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.36 E-value=2.2e-13 Score=128.51 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=55.9
Q ss_pred CccEEEcceEEEc-CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 63 AHDVESGTFCDSL-DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 63 ~~~l~~~~l~~~~-~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+.+++++|++++| ++..+|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+.
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~ 73 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIRE---GEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVW 73 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEE
Confidence 3579999999999 888899999999999 999999999999999999999999998 566653
No 87
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.35 E-value=3.4e-13 Score=122.12 Aligned_cols=65 Identities=23% Similarity=0.376 Sum_probs=56.8
Q ss_pred cEEEcceEEEcC--C---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLD--G---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~--~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|+ + +.+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~---~~g~~~ 71 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINE---GECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVL---YDGERK 71 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEE---ETTEEC
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEE---ECCEEC
Confidence 589999999997 5 6799999999999 999999999999999999999999988 566664 355443
No 88
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.35 E-value=3.4e-13 Score=124.83 Aligned_cols=68 Identities=29% Similarity=0.325 Sum_probs=59.5
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
..++++||+++|+ +..+|+++||++++ |++++|+||||||||||+++|++.+.| +.|.+. ++|.++..
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~---Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~---i~G~~i~~ 120 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMP---GQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIR---IDGQDISQ 120 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECT---TCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEE---ETTEETTS
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcC---CCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEE---ECCEEccc
Confidence 3599999999995 57899999999999 999999999999999999999999999 577664 46766644
No 89
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.35 E-value=3.1e-12 Score=113.50 Aligned_cols=44 Identities=18% Similarity=0.007 Sum_probs=28.4
Q ss_pred cCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 75 LDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 75 ~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
-++..+|+++||++.+ |.+|+|+||+|||||||+++|++.+|..
T Consensus 9 ~~~~~~l~~isl~i~~---g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMR---PFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --------------CC---SEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCceeecceeccCCC---CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3567799999999999 9999999999999999999999988765
No 90
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.35 E-value=1.2e-11 Score=112.63 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=92.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc-hhhhhhhhc----------------hhhhhhhH-
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS-VAQIFKESG----------------EAYFREYE- 154 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~-i~~~~~~~g----------------~~~fr~~e- 154 (287)
...|+|+|++||||||+++.|+ .++++++|+|.+..+.. .|.. ...+....| ...|...+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~ 153 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ 153 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence 4579999999999999999999 58999999999865433 1111 111111111 11122111
Q ss_pred ----------------HHHHHHhhc-CCCeEEecCCceEeccccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCC
Q 023118 155 ----------------SKALQKLSL-VPQQVVATGGGAVVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDY 217 (287)
Q Consensus 155 ----------------~~~l~~l~~-~~~~via~ggG~v~~~~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~ 217 (287)
.+.+.++.. ....|+..|... ....|..+ -+.+|||++|++++.+|+..|.+ ++
T Consensus 154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l--~~~~~~~~-~d~vI~l~a~~ev~~~Rl~~R~g--~s---- 224 (281)
T 2f6r_A 154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAML--LEAGWQSM-VHEVWTVVIPETEAVRRIVERDG--LS---- 224 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTT--TTTTGGGG-CSEEEEEECCHHHHHHHHHHHHC--CC----
T ss_pred HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechh--hccchHHh-CCEEEEEcCCHHHHHHHHHHcCC--CC----
Confidence 112222211 234577776532 22233221 26899999999999999987631 11
Q ss_pred CCcchhhHHHHHHHHHHHHH---HhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 218 DSADSYTKAFTALSALSKER---SEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 218 ~~~~~~~~~~~~l~~l~~~R---~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
. +.+.+.+..+ ...+..||++| |++. +++++..+|.+.+..+++
T Consensus 225 -----~----e~~~~ri~~q~~~~~~~~~AD~vI------------dn~~-s~eel~~~I~~~l~~l~~ 271 (281)
T 2f6r_A 225 -----E----AAAQSRLQSQMSGQQLVEQSNVVL------------STLW-ESHVTQSQVEKAWNLLQK 271 (281)
T ss_dssp -----H----HHHHHHHHTSCCHHHHHHTCSEEE------------ECSS-CHHHHHHHHHHHHHHHHH
T ss_pred -----H----HHHHHHHHHcCChHhhHhhCCEEE------------ECCC-CHHHHHHHHHHHHHHHHH
Confidence 1 1122222222 22334477664 6765 999999999999887654
No 91
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.33 E-value=4.6e-13 Score=119.28 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=52.9
Q ss_pred cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+ +..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I 62 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPE---GALVAVVGQVGCGKSSLLSALLAEMDK---VEGHV 62 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceE
Confidence 589999999997 57899999999999 999999999999999999999999987 45554
No 92
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.33 E-value=6.6e-13 Score=119.48 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=54.0
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+++.|+ +..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~---Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I 62 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNK---GDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKI 62 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEET---TCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence 699999999998 88899999999999 999999999999999999999999988 56654
No 93
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.33 E-value=3.7e-13 Score=126.69 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=53.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
|++++|++++|++. +|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~ 58 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVES---GEYFVILGPTGAGKTLFLELIAGFHVP---DSGRIL 58 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECT---TCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEE
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcC---CCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEE
Confidence 47899999999988 99999999999 999999999999999999999999998 666654
No 94
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.33 E-value=2.3e-13 Score=128.26 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=54.7
Q ss_pred cEEEcceEEEcCCee--eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 65 DVESGTFCDSLDGKW--LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~--il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++++|++++|++.. +|+++||++++ |++++|+||||||||||+++|+|++.| ++|.+.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~---Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~ 63 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIEN---GERFGILGPSGAGKTTFMRIIAGLDVP---STGELY 63 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECT---TCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEE
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECC---CCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEE
Confidence 589999999998877 99999999999 999999999999999999999999988 666654
No 95
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.32 E-value=2.4e-11 Score=105.01 Aligned_cols=106 Identities=20% Similarity=0.265 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCc----hhhhhhhhchhhhhhhHHHHHH-HhhcCCCeEE
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTS----VAQIFKESGEAYFREYESKALQ-KLSLVPQQVV 169 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~----i~~~~~~~g~~~fr~~e~~~l~-~l~~~~~~vi 169 (287)
+|+|+|++||||||+++.|+..++..+++.|.++.+.. .+.. +.+++. .|...........+. .+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~l~~~----- 75 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYID-KGELVPDEVTIGIVKERLGKD----- 75 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHTSG-----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcc-----
Confidence 58999999999999999999999999999999887744 2322 223322 222111112222222 22221
Q ss_pred ecCCceEec--cccHH---hh----c-----CCcEEEEecCHHHHHHHHhhc
Q 023118 170 ATGGGAVVR--PLNWR---FM----R-----QGITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 170 a~ggG~v~~--~~~~~---~L----~-----~g~~I~L~~~~e~l~~Ri~~~ 207 (287)
.++.+.+++ |.... .+ . -..+|||++|++++.+|+..|
T Consensus 76 ~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 76 DCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp GGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred cccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 123344433 22221 11 1 147899999999999999876
No 96
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.32 E-value=8.1e-13 Score=117.04 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=53.5
Q ss_pred ccEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|+ +..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 65 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKI 65 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCcC---CccEE
Confidence 3699999999994 57899999999999 999999999999999999999999988 55554
No 97
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.31 E-value=2.2e-11 Score=108.32 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCch----hhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSV----AQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i----~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
+.+|+|+||+||||||+++.|+..++..++++|.++.+.. .|..+ .+++.. |...-...-...+.......
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~--- 104 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLSLVDEKLKTP--- 104 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTTSG---
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcc---
Confidence 6789999999999999999999999999999999987754 23222 222221 21111111112222221111
Q ss_pred EecCCceEec--cccH---Hh----hc-----CCcEEEEecCHHHHHHHHhhcCCC----------C-------------
Q 023118 169 VATGGGAVVR--PLNW---RF----MR-----QGITVFLNVPLDALARRIAAVGTD----------S------------- 211 (287)
Q Consensus 169 ia~ggG~v~~--~~~~---~~----L~-----~g~~I~L~~~~e~l~~Ri~~~~~~----------~------------- 211 (287)
.++.|.+++ +... .. +. -..+|||++|++++.+|+..|..+ +
T Consensus 105 -~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 183 (243)
T 3tlx_A 105 -QCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTN 183 (243)
T ss_dssp -GGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTC
T ss_pred -cccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCCCCcccCcccccccCCCcccCcccccc
Confidence 122233332 1221 11 11 257999999999999999976421 1
Q ss_pred CCCcCCCCcchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHH
Q 023118 212 FPLLDYDSADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQ 279 (287)
Q Consensus 212 RPll~~~~~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~ 279 (287)
+|+.... .+..+....++....++-.| .|...+..+. ||.+ .++++|..+|.+.+.
T Consensus 184 ~~l~~r~-dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~----------id~~-~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 184 EPLIQRE-DDNEDVLKKRLTVFKSETSPLISYYKNKNLLIN----------LDAT-QPANDLEKKISQHID 242 (243)
T ss_dssp CBCBCCG-GGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEE----------EETT-SCHHHHHHHHHHHHH
T ss_pred ccccCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEE----------EECC-CCHHHHHHHHHHHHc
Confidence 2222221 12222223344443333333 4655554443 5655 499999999988775
No 98
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.31 E-value=6e-11 Score=104.86 Aligned_cols=180 Identities=18% Similarity=0.131 Sum_probs=88.5
Q ss_pred ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC--ccccc--------hhHHHHHhC-CCchhhhhhhhchhh
Q 023118 81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY--TFADS--------DKYVEKLMG-GTSVAQIFKESGEAY 149 (287)
Q Consensus 81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~--~fid~--------d~~ie~~~~-G~~i~~~~~~~g~~~ 149 (287)
|.+.++.+...-.|..|+|.|++||||||+++.|++.++. .++.+ +..+.+.+. |..+... .+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~----~~~l 88 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIR----TEAM 88 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHH----HHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHH----HHHH
Confidence 5556666552223999999999999999999999999863 33322 122222221 1100000 0000
Q ss_pred -hhhhHHHH-----HHHhhcCCCeEEec----------CCceEeccccHHhh--------cCCcEEEEecCHHHHHHHHh
Q 023118 150 -FREYESKA-----LQKLSLVPQQVVAT----------GGGAVVRPLNWRFM--------RQGITVFLNVPLDALARRIA 205 (287)
Q Consensus 150 -fr~~e~~~-----l~~l~~~~~~via~----------ggG~v~~~~~~~~L--------~~g~~I~L~~~~e~l~~Ri~ 205 (287)
|-....+. ...+. ....|+.. |.+.-+.......+ ....+|||++|++.+.+|+.
T Consensus 89 l~~a~r~~~~~~~i~~~l~-~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~ 167 (229)
T 4eaq_A 89 LFAASRREHLVLKVIPALK-EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERII 167 (229)
T ss_dssp HHHHHHHHHCCCCCHHHHH-TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHH
Confidence 00000000 11111 23345555 43322222211111 12579999999999999998
Q ss_pred hcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 206 AVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 206 ~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.|+.. .-..+ +...+.++++.+.|.+..+.|. ..+.+ ||++ .++++|+++|.+.+..++.
T Consensus 168 ~R~~~---~dr~e--~~~~~~~~rv~~~y~~l~~~~~-~~~~v-----------IDa~-~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 168 KNSRD---QNRLD--QEDLKFHEKVIEGYQEIIHNES-QRFKS-----------VNAD-QPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HC--------CCC--HHHHHHHHHHHHHHHHHTTTCT-TTEEE-----------EETT-SCHHHHHHHHHHHHHHHHT
T ss_pred hcCCC---ccchh--hhhHHHHHHHHHHHHHHHHhCC-CCEEE-----------EeCC-CCHHHHHHHHHHHHHHHhc
Confidence 86421 11111 0111123344444444433332 22333 6775 5999999999999998875
No 99
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.30 E-value=2.8e-11 Score=106.28 Aligned_cols=162 Identities=20% Similarity=0.260 Sum_probs=101.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh--CCCchhhhhhhhchhhhhh---hHHH------------
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM--GGTSVAQIFKESGEAYFRE---YESK------------ 156 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~--~G~~i~~~~~~~g~~~fr~---~e~~------------ 156 (287)
.--|+|+|..||||||++++|+. +|++++|+|.+..+.+ ++..+.+++...|+..|.. ....
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 34699999999999999999998 9999999999887655 4566777777777776631 1111
Q ss_pred ---------------HHHHhhcC-CCeEEecCCceEecc-ccHHhhcCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCC
Q 023118 157 ---------------ALQKLSLV-PQQVVATGGGAVVRP-LNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDS 219 (287)
Q Consensus 157 ---------------~l~~l~~~-~~~via~ggG~v~~~-~~~~~L~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~ 219 (287)
+.+.+... ...++....- +.+ ..+..+ -..+||+++|++.+.+|+..|.+-
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pL--L~E~~~~~~~-~D~vi~V~ap~e~r~~Rl~~Rdg~--------- 155 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVVPL--LVESRNWKAR-CDRVLVVDCPVDTQIARVMQRNGF--------- 155 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTT--CTTCHHHHHH-CSEEEEEECCHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEec--ccccCCcccc-CCeEEEEECCHHHHHHHHHhcCCC---------
Confidence 11111111 1122222221 112 222211 167999999999999999876311
Q ss_pred cchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 220 ADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 220 ~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+.+++..++...+ .+.+.++.||++| |+++.+++++..+|.+.+++++.
T Consensus 156 --s~eea~~ri~~Q~-~~eek~~~AD~VI------------dN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 156 --TREQVEAIIARQA-TREARLAAADDVI------------VNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp --CHHHHHHHHHHSC-CHHHHHHTCSEEE------------ECSSCCHHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHcC-ChHHHHHhCCEEE------------ECCCCCHHHHHHHHHHHHHHHHH
Confidence 1112222332221 2345556688876 56524899999999988887754
No 100
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.30 E-value=4.3e-12 Score=108.20 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=90.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHH-HHHhCCCchhhhhhhhc------hh-h---hhhhHHHHHHH
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYV-EKLMGGTSVAQIFKESG------EA-Y---FREYESKALQK 160 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~i-e~~~~G~~i~~~~~~~g------~~-~---fr~~e~~~l~~ 160 (287)
+|..|+|+|++||||||+++.|+..+ ++++++.+... .... |..+.++|...+ .. . .|..+.+.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~-g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~ 81 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVT-GKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQE 81 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHH-HHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999998 57777654321 0111 223334432211 00 0 01111112222
Q ss_pred hhcCCCeEEe-----------cCCceEeccccHHhh-----cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhh
Q 023118 161 LSLVPQQVVA-----------TGGGAVVRPLNWRFM-----RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYT 224 (287)
Q Consensus 161 l~~~~~~via-----------~ggG~v~~~~~~~~L-----~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~ 224 (287)
.......|+. +|+|.. ......+ ..+.+|||++|++++.+ .|+. .+ . + ..
T Consensus 82 ~l~~~~~vi~Dr~~~s~~~~~~~~g~~--~~~~~~~~~~~~~~d~vi~l~~~~e~~~~---~R~~-d~--~--e-~~--- 147 (204)
T 2v54_A 82 QLEQGITLIVDRYAFSGVAYAAAKGAS--MTLSKSYESGLPKPDLVIFLESGSKEINR---NVGE-EI--Y--E-DV--- 147 (204)
T ss_dssp HHHTTCEEEEESCHHHHHHHHHHTTCC--HHHHHHHHTTSBCCSEEEEECCCHHHHTT---CCSS-ST--T--C-CS---
T ss_pred HHHCCCEEEEECchhhHHHHHHccCCC--HHHHHHHhcCCCCCCEEEEEeCCHHHHHh---hcCc-cc--c--c-HH---
Confidence 2223344553 233321 1111111 12689999999998877 2321 11 1 1 11
Q ss_pred HHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 225 KAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 225 ~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
+..+++...|.+..+.|. .+..+ ||++ .++++++++|.+.+.+.+..
T Consensus 148 ~~~~rl~~~y~~~~~~~~-~~~~~-----------Id~~-~~~~~v~~~i~~~l~~~l~~ 194 (204)
T 2v54_A 148 TFQQKVLQEYKKMIEEGD-IHWQI-----------ISSE-FEEDVKKELIKNIVIEAIHT 194 (204)
T ss_dssp HHHHHHHHHHHHHHTTCS-SCEEE-----------ECTT-SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-CcEEE-----------EECC-CCHHHHHHHHHHHHHHHHhh
Confidence 223556666665555443 23333 5775 69999999999999887753
No 101
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.29 E-value=3.5e-12 Score=128.21 Aligned_cols=158 Identities=19% Similarity=0.143 Sum_probs=98.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc---CCccccchhHHHHHhCCCchhhhhh-hhchhhhhhhHHHHHHHhhcCCCeEE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL---DYTFADSDKYVEKLMGGTSVAQIFK-ESGEAYFREYESKALQKLSLVPQQVV 169 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d~~ie~~~~G~~i~~~~~-~~g~~~fr~~e~~~l~~l~~~~~~vi 169 (287)
|..|.|+|++||||||+++.|+..| +++|++.|..+.. .+......|. ..++..||.. .++++.+..... ++
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR--~~L~~~~~fs~~dree~~r~i-~eva~~~l~~G~-iV 127 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIR--QGLNKNLGFSPEDREENVRRI-AEVAKLFADAGL-VC 127 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHT--TTTTTTCCSSHHHHHHHHHHH-HHHHHHHHHTTC-EE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhh--hccCccccCChhhhHHHHHHH-HHHHHHHHhCCC-EE
Confidence 6789999999999999999999998 8888666432211 2443333344 4566777765 334444333333 33
Q ss_pred ecCCceEe---ccccHHhhcC-C---cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhh
Q 023118 170 ATGGGAVV---RPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYA 242 (287)
Q Consensus 170 a~ggG~v~---~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~ 242 (287)
.++.+.+. ++.++.++.. + ++|||++|++++.+|+. +|+... +.......+..+++.|+
T Consensus 128 I~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~------r~ly~~--------aR~~~~~~~~~~~~~Ye 193 (630)
T 1x6v_B 128 ITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDV------KGLYKK--------ARAGEIKGFTGIDSEYE 193 (630)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCT------TSHHHH--------HTTC----CBTTTBCCC
T ss_pred EEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhc------cccchh--------hhhhhHHHHHHhhhhhc
Confidence 34433332 2334444543 4 48999999999999964 232210 00000112345677786
Q ss_pred ---hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 243 ---NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 243 ---~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
.+|++ |||+++++++++++|++.+...
T Consensus 194 ~p~~~dlv------------IDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 194 KPEAPELV------------LKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp CCSSCSEE------------EETTSSCHHHHHHHHHHHHHHT
T ss_pred ccCCCcEE------------EECCCCCHHHHHHHHHHHHHhc
Confidence 25544 5899899999999999999753
No 102
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.29 E-value=5.5e-11 Score=105.23 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=92.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCch----hhhhhhhchhhhhhhHHHHHH-Hhhc-CCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSV----AQIFKESGEAYFREYESKALQ-KLSL-VPQ 166 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i----~~~~~~~g~~~fr~~e~~~l~-~l~~-~~~ 166 (287)
+++|+|+|||||||||++++|+..++..++++|.++.... .+..+ ..++. .+.........+.+. .+.. ...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIE-KSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHhcCCC
Confidence 6899999999999999999999777777779988864422 12112 12221 122111111222222 2221 111
Q ss_pred eEEecCCceEeccccHHhh---cC-CcEEEEecCHHHHHHHHhhcCC-----------CC------------CCCcCCCC
Q 023118 167 QVVATGGGAVVRPLNWRFM---RQ-GITVFLNVPLDALARRIAAVGT-----------DS------------FPLLDYDS 219 (287)
Q Consensus 167 ~via~ggG~v~~~~~~~~L---~~-g~~I~L~~~~e~l~~Ri~~~~~-----------~~------------RPll~~~~ 219 (287)
.++..|.. ........+ .. +.+|||++|++.+.+|+..+.. -. .|+... +
T Consensus 106 ~~il~g~~--~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~l-d 182 (246)
T 2bbw_A 106 HWLLDGFP--RTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQ-E 182 (246)
T ss_dssp CEEEESCC--CSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCC-G
T ss_pred eEEEECCC--CCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccC-C
Confidence 22222211 011111122 22 7899999999999999875410 00 222211 1
Q ss_pred cchhhHHHHHHHHHHHHHHh---hhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 220 ADSYTKAFTALSALSKERSE---AYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 220 ~~~~~~~~~~l~~l~~~R~~---~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.+......+.+.++.++..+ .|.+.+..+. ||.+. + ++|..+|.+.+.+.+.
T Consensus 183 ~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~----------id~~~-~-~~v~~~i~~~l~~~~~ 237 (246)
T 2bbw_A 183 DDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQ----------FSGTE-T-NKIWPYVYTLFSNKIT 237 (246)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE----------EECSC-H-HHHHHHHHHHHHTTSC
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEE----------ECCCC-c-HHHHHHHHHHHHhhCC
Confidence 11222223444444344444 5555544332 56653 4 9999999999887654
No 103
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.29 E-value=4.7e-11 Score=102.60 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=95.3
Q ss_pred ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc-CCccccchhHHHHHhCCCchhh---hhhh------hchhhhhhhH
Q 023118 85 GREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL-DYTFADSDKYVEKLMGGTSVAQ---IFKE------SGEAYFREYE 154 (287)
Q Consensus 85 s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l-~~~fid~d~~ie~~~~G~~i~~---~~~~------~g~~~fr~~e 154 (287)
--.+.+ |..|+|+|++||||||+++.|++.+ +..+++.|.++. .+..+.. -+.. .....+...-
T Consensus 15 ~~~~~~---~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i 88 (207)
T 2qt1_A 15 VPRGSK---TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK---PESEIETDKNGFLQYDVLEALNMEKMMSAI 88 (207)
T ss_dssp CCCSCC---CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC---CGGGSCBCTTSCBCCSSGGGBCHHHHHHHH
T ss_pred cccCCC---CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc---CHhHhhccccCCChhHHHHHhHHHHHHHHH
Confidence 345566 8999999999999999999999998 899999998862 2222110 0000 0001111110
Q ss_pred HHHHHHhh-----------cCCCeEEecCCceEeccccHHhhcC-CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118 155 SKALQKLS-----------LVPQQVVATGGGAVVRPLNWRFMRQ-GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS 222 (287)
Q Consensus 155 ~~~l~~l~-----------~~~~~via~ggG~v~~~~~~~~L~~-g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~ 222 (287)
...+.... .....++.+|.... . ....... ..+|||++|++.+.+|+..|+ +. .......
T Consensus 89 ~~~l~~~~~~~~~~~~~~~~~~~~vi~eg~~~~--~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~---~~--~e~~~~~ 160 (207)
T 2qt1_A 89 SCWMESARHSVVSTDQESAEEIPILIIEGFLLF--N-YKPLDTIWNRSYFLTIPYEECKRRRSTRV---YQ--PPDSPGY 160 (207)
T ss_dssp HHHHHHHTTSSCCC-----CCCCEEEEECTTCT--T-CGGGTTTCSEEEEEECCHHHHHHHHHHSC---CS--SCCCTTH
T ss_pred HHHHhCCCCCCcCCCeeecCCCCEEEEeehHHc--C-cHHHHHhcCeeEEEECCHHHHHHHHHHcC---CC--ccchHHH
Confidence 11122111 01234555553211 1 1112222 689999999999999987653 11 1100111
Q ss_pred hhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHH
Q 023118 223 YTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKY 281 (287)
Q Consensus 223 ~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~ 281 (287)
+. ..+...|..+.+.|+. +|.++ +||++ .+++++.++|.+.+++.
T Consensus 161 ~~---~~~~~~~~~~~~~~~~~~~~v~----------~Id~~-~~~eev~~~I~~~l~~~ 206 (207)
T 2qt1_A 161 FD---GHVWPMYLKYRQEMQDITWEVV----------YLDGT-KSEEDLFLQVYEDLIQE 206 (207)
T ss_dssp HH---HTHHHHHHHHHHHGGGCSSCCE----------EEETT-SCHHHHHHHHHHHHTTT
T ss_pred HH---HHHhHHHHHHHHHHHhcCCeEE----------EecCC-CCHHHHHHHHHHHHHhh
Confidence 11 1334455555566665 55443 25776 59999999999888654
No 104
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.28 E-value=2e-12 Score=121.13 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=90.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH--------------HHHHhCCC-----chhhh-hhhhchhhhhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY--------------VEKLMGGT-----SVAQI-FKESGEAYFREY 153 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~--------------ie~~~~G~-----~i~~~-~~~~g~~~fr~~ 153 (287)
+..|+|+||+|||||||+..||..++..|||+|.+ .++. .|. ++.+. +...+...|++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~-~gvphhlidi~~~~~e~~s~~~F~~~ 118 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDR-GGVPHHLLGEVDPARGELTPADFRSL 118 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGG-TTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHH-cCCCEeeccccCcccCccCHHHHHHH
Confidence 67899999999999999999999999999999987 2332 244 44555 567788999999
Q ss_pred HHHHHHHhhcCCCeEEecCCceEeccccHH---------------------hhc-CCcEEEEecCHHHHHHHHhhcCCCC
Q 023118 154 ESKALQKLSLVPQQVVATGGGAVVRPLNWR---------------------FMR-QGITVFLNVPLDALARRIAAVGTDS 211 (287)
Q Consensus 154 e~~~l~~l~~~~~~via~ggG~v~~~~~~~---------------------~L~-~g~~I~L~~~~e~l~~Ri~~~~~~~ 211 (287)
+.++++++......+|.+||+.+....... .++ .+++|||+.+.+.+.+||..|.
T Consensus 119 a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R~--- 195 (339)
T 3a8t_A 119 AGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRV--- 195 (339)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhhc---
Confidence 999999988777789999986332211111 122 2678999999999999998752
Q ss_pred CCCcC
Q 023118 212 FPLLD 216 (287)
Q Consensus 212 RPll~ 216 (287)
+|++.
T Consensus 196 ~~Ml~ 200 (339)
T 3a8t_A 196 DDMLE 200 (339)
T ss_dssp HHHHH
T ss_pred cHhhh
Confidence 45554
No 105
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.28 E-value=1.7e-11 Score=102.06 Aligned_cols=111 Identities=16% Similarity=0.258 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHh-ccCCccccchhHHHHHhCCCchh--hhhhhhchhhhhhhHHHHHHHhh---cCCCeE
Q 023118 95 QCLFLVGMMGSGKTTVGEILSD-ALDYTFADSDKYVEKLMGGTSVA--QIFKESGEAYFREYESKALQKLS---LVPQQV 168 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~-~l~~~fid~d~~ie~~~~G~~i~--~~~~~~g~~~fr~~e~~~l~~l~---~~~~~v 168 (287)
..|+|+|++||||||+++.|+. .+++.++++|.+.+... +.+.. ..+...++..++......+.... .....+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~v 81 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGV 81 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT-TSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhh-CCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCeE
Confidence 4799999999999999999999 78999999998876665 43221 11223344555544445555544 222334
Q ss_pred EecCCceEeccccHHhh----cC-C---cEEEEecCHHHHHHHHhhcC
Q 023118 169 VATGGGAVVRPLNWRFM----RQ-G---ITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 169 ia~ggG~v~~~~~~~~L----~~-g---~~I~L~~~~e~l~~Ri~~~~ 208 (287)
+..|.. .....+..+ .. | .+|||++|++.+.+|+..|+
T Consensus 82 i~d~~~--~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 82 IISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp EECSCC--CSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred EEeCCC--CCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 433321 111112222 11 3 58999999999999997654
No 106
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.27 E-value=8.4e-11 Score=100.29 Aligned_cols=171 Identities=16% Similarity=0.141 Sum_probs=86.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCc--cccchhHHHHHhCCCchhhhhhhhc----h-----hhhh-hhHH----H
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYT--FADSDKYVEKLMGGTSVAQIFKESG----E-----AYFR-EYES----K 156 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~--fid~d~~ie~~~~G~~i~~~~~~~g----~-----~~fr-~~e~----~ 156 (287)
+|..|+|.|++||||||+++.|+..++.. ++..+.- .|..+.+++...+ . ..+. .... +
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 77 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN-----SSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYER 77 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT-----CCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC-----cHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999988763 4332110 1222222221111 0 0000 0000 1
Q ss_pred HHHHhhcCCCeEEecCC-----------ceEeccccHHhhc-----CCcEEEEecCHHHHHHHHh-hcCCCCCCCcCC--
Q 023118 157 ALQKLSLVPQQVVATGG-----------GAVVRPLNWRFMR-----QGITVFLNVPLDALARRIA-AVGTDSFPLLDY-- 217 (287)
Q Consensus 157 ~l~~l~~~~~~via~gg-----------G~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~-~~~~~~RPll~~-- 217 (287)
.+.........|+..+. |. .......+. .+.+|||++|++.+.+|+. .|+. ..+...+
T Consensus 78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~-~~~~~~g~~ 154 (213)
T 2plr_A 78 YILPMLKSGFIVISDRYIYTAYARDSVRGV--DIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRK-IKPQEAGAD 154 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHHTTTC--CHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCC-CCTTTTTTT
T ss_pred HHHHHHhCCCEEEEeCcHhHHHHHHHhhCC--CHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccc-ccccccccc
Confidence 11121222344555431 11 011111121 2679999999999999998 6642 1221100
Q ss_pred --CCcchhhHHHHHHHHHHHHHHhhhhh-CCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 218 --DSADSYTKAFTALSALSKERSEAYAN-ADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 218 --~~~~~~~~~~~~l~~l~~~R~~~Y~~-ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
...+.++ ...+.+....+.|.. ++. . ...+||++ .++++++++|.+.+.+++.+
T Consensus 155 ~~~~~d~~e----~~~~~~~r~~~~~~~~~~~-------~-~~~~Id~~-~~~e~v~~~I~~~l~~~~~~ 211 (213)
T 2plr_A 155 IFPGLSPEE----GFLKYQGLITEVYDKLVKD-------E-NFIVIDGT-KTPKEIQIQIRKFVGELIDN 211 (213)
T ss_dssp TCTTSCHHH----HHHHHHHHHHHHHHHHTTT-------T-TCEEEETT-SCHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhh----hHHHHHHHHHHHHHHHHhh-------C-CEEEEECC-CCHHHHHHHHHHHHHHHhhc
Confidence 0011121 112233333445543 220 0 01126776 59999999999999887654
No 107
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.24 E-value=6.8e-11 Score=100.74 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=26.1
Q ss_pred ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 85 GREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 85 s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
|+++.+ |++++|+||||||||||+++|++.+.
T Consensus 1 s~~m~~---g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNK---ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CC---CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCC---CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 455666 99999999999999999999999864
No 108
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.22 E-value=4.5e-12 Score=120.95 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=56.2
Q ss_pred ccEEEcceEEEc--CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 64 HDVESGTFCDSL--DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 64 ~~l~~~~l~~~~--~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
..++++||+++| ++..+|+++||++++ |++++|+||||||||||+++|+|++. ++|.+. ++|.++.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~---Ge~~~llGpsGsGKSTLLr~iaGl~~----~~G~I~---i~G~~i~ 85 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISP---GQRVGLLGRTGSGKSTLLSAFLRLLN----TEGEIQ---IDGVSWD 85 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHHTCSE----EEEEEE---ESSCBTT
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcC---CCEEEEECCCCChHHHHHHHHhCCCC----CCeEEE---ECCEECC
Confidence 369999999999 667899999999999 99999999999999999999999874 345553 3566553
No 109
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.21 E-value=1.7e-10 Score=100.80 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCCchhhhh---hhhchhhhhhhHHHHHHHhhcCCCeEEec
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGTSVAQIF---KESGEAYFREYESKALQKLSLVPQQVVAT 171 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~~i~~~~---~~~g~~~fr~~e~~~l~~l~~~~~~via~ 171 (287)
+|+|+||+||||+|+++.|+..++..+|++|+++.+.. .+..+.... -..|.-.--+.-..++.+-......++-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilD 81 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFD 81 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEec
Confidence 68999999999999999999999999999999987654 232222111 12222111111222333322223333333
Q ss_pred CC-ceEeccccHH-hhc-C----CcEEEEecCHHHHHHHHhhc
Q 023118 172 GG-GAVVRPLNWR-FMR-Q----GITVFLNVPLDALARRIAAV 207 (287)
Q Consensus 172 gg-G~v~~~~~~~-~L~-~----g~~I~L~~~~e~l~~Ri~~~ 207 (287)
|- -++.....+. .+. . ..+|+|++|.+.+.+|+..|
T Consensus 82 GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R 124 (206)
T 3sr0_A 82 GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGR 124 (206)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTE
T ss_pred CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCC
Confidence 31 1111111111 121 1 46899999999999999876
No 110
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.21 E-value=8.7e-12 Score=112.51 Aligned_cols=66 Identities=29% Similarity=0.349 Sum_probs=55.7
Q ss_pred ccEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 64 HDVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 64 ~~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.+++++|+++.|++ ..+|+++||++++ |++++|+||||||||||+++|+|.+.+ + |.+. ++|.++.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~---Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~-G~I~---i~g~~i~ 84 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPS---GTTCALVGHTGSGKSTIAKLLYRFYDA---E-GDIK---IGGKNVN 84 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECT---TCEEEEECSTTSSHHHHHHHHTTSSCC---E-EEEE---ETTEEGG
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECC---CCEEEEECCCCCCHHHHHHHHhccCCC---C-eEEE---ECCEEhh
Confidence 36999999999975 4699999999999 999999999999999999999999864 3 5443 3566553
No 111
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.21 E-value=1.5e-10 Score=97.81 Aligned_cols=163 Identities=13% Similarity=0.129 Sum_probs=80.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc---CCccccchhHHHHHhCCCchhhhhhhhch-----hh-hhhhHHHHHHHhh---c
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL---DYTFADSDKYVEKLMGGTSVAQIFKESGE-----AY-FREYESKALQKLS---L 163 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l---~~~fid~d~~ie~~~~G~~i~~~~~~~g~-----~~-fr~~e~~~l~~l~---~ 163 (287)
.|+|.|++||||||+++.|+..+ +++++.++.-..... |..+.+++..... .. |-......++++. .
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l~ 80 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTET-GEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLS 80 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999998 888876533100000 1111222110000 00 1011111122221 1
Q ss_pred CCCeEEec----------CCceEeccccHHhh--------cCCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhH
Q 023118 164 VPQQVVAT----------GGGAVVRPLNWRFM--------RQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTK 225 (287)
Q Consensus 164 ~~~~via~----------ggG~v~~~~~~~~L--------~~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~ 225 (287)
....|+.. |.+..........+ ....+|||++|++++.+|+..|+ + .. . . +
T Consensus 81 ~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~---~--~~--~-~---~ 149 (197)
T 2z0h_A 81 EGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELN---R--FE--K-R---E 149 (197)
T ss_dssp --CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---C---C--CC--C-H---H
T ss_pred CCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccC---c--cc--H-H---H
Confidence 12234332 22211111111111 13679999999999999987652 1 11 1 1 2
Q ss_pred HHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 226 AFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 226 ~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
.++++.+.|.+....|. .+..+ ||++ .++++++++|.+.+++++.
T Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~-----------Id~~-~~~e~~~~~i~~~l~~~l~ 194 (197)
T 2z0h_A 150 FLERVREGYLVLAREHP-ERIVV-----------LDGK-RSIEEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHHHHHHHHHHHCT-TTEEE-----------EETT-SCHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHhCC-CCEEE-----------EeCC-CCHHHHHHHHHHHHHHHhc
Confidence 23444444444433332 23333 5765 5999999999999887664
No 112
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.21 E-value=2.2e-10 Score=98.14 Aligned_cols=165 Identities=13% Similarity=0.068 Sum_probs=85.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHH----HhCCCchhhhhhhhc------hh-hh---hhhHHHHHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEK----LMGGTSVAQIFKESG------EA-YF---REYESKALQ 159 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~----~~~G~~i~~~~~~~g------~~-~f---r~~e~~~l~ 159 (287)
|..|+|+|++||||||+++.|+..++..+++.+.+.+. .. |..+.++|...+ .. .| |....+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~ 87 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEI-GKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIK 87 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHH-HHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcH-HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999876555554221100 00 111222221100 00 01 000001233
Q ss_pred HhhcCCCeEEecC----------C--ceEeccccHHhhc-----CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcch
Q 023118 160 KLSLVPQQVVATG----------G--GAVVRPLNWRFMR-----QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADS 222 (287)
Q Consensus 160 ~l~~~~~~via~g----------g--G~v~~~~~~~~L~-----~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~ 222 (287)
........|+... + |. .......+. ...+|||++|++++.+|+..+. .+ . +. .
T Consensus 88 ~~l~~~~~vi~dr~~~s~~~~~~~~~~~--~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~--~~-~---~~-~- 157 (215)
T 1nn5_A 88 EKLSQGVTLVVDRYAFSGVAFTGAKENF--SLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGH--ER-Y---EN-G- 157 (215)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHTSTTC--CHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-------CT-T---CS-H-
T ss_pred HHHHCCCEEEEeCCcccHHHHHhhcCCC--CHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCc--cc-c---ch-H-
Confidence 3222334555542 1 11 111122222 2679999999999999986321 12 1 11 1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 223 YTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 223 ~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
+..+.+.+.|.+..+.|. ++..+ ||++ .++++++++|.+.+...+..
T Consensus 158 --~~~~~~~~~~~~~~~~~~-~~~~~-----------Id~~-~~~e~~~~~i~~~l~~~l~~ 204 (215)
T 1nn5_A 158 --AFQERALRCFHQLMKDTT-LNWKM-----------VDAS-KSIEAVHEDIRVLSEDAIAT 204 (215)
T ss_dssp --HHHHHHHHHHHHHTTCTT-SCEEE-----------EETT-SCHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHhCC-CCEEE-----------EECC-CCHHHHHHHHHHHHHHHHhh
Confidence 122344444444444332 33333 5764 69999999999999887653
No 113
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.20 E-value=5.8e-12 Score=114.07 Aligned_cols=63 Identities=29% Similarity=0.374 Sum_probs=55.2
Q ss_pred cEEEcceEEEcCC----eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDG----KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~----~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|+++.|++ ..+|+++||+++ |++++|+||||||||||+++|+|.+ | ++|.+. ++|.++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~----Ge~~~i~G~NGsGKSTLlk~l~Gl~-p---~~G~I~---~~g~~~ 67 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN----GEKVIILGPNGSGKTTLLRAISGLL-P---YSGNIF---INGMEV 67 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC----SSEEEEECCTTSSHHHHHHHHTTSS-C---CEEEEE---ETTEEG
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC----CEEEEEECCCCCCHHHHHHHHhCCC-C---CCcEEE---ECCEEC
Confidence 4789999999986 789999999997 8999999999999999999999999 8 677665 456554
No 114
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.19 E-value=4.2e-12 Score=126.63 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC----C--ccccchhHHHHHhCCCchhhhhhh-hchhhhhhhHHHHHHHhhcCCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD----Y--TFADSDKYVEKLMGGTSVAQIFKE-SGEAYFREYESKALQKLSLVPQ 166 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~----~--~fid~d~~ie~~~~G~~i~~~~~~-~g~~~fr~~e~~~l~~l~~~~~ 166 (287)
+..|.|+|++||||||+++.|+..++ . .++|+|.+-.. ..+. ..|.. .....++.. .++++.+.....
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~-l~~~---~~f~~~er~~~i~ri-~~v~~~~~~~g~ 470 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHE-LSSE---LGFTREDRHTNIQRI-AFVATELTRAGA 470 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHH-TCTT---CCCSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHH-hccc---cCCChhHHHHHHHHH-HHHHHHHHhCCC
Confidence 67899999999999999999999876 3 45677765432 2121 01110 011111111 124445444444
Q ss_pred eEEecCCceE--eccccHHhhcC-C--cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh
Q 023118 167 QVVATGGGAV--VRPLNWRFMRQ-G--ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY 241 (287)
Q Consensus 167 ~via~ggG~v--~~~~~~~~L~~-g--~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y 241 (287)
.|+++.-... .+..+++++.. | ++|||++|++++.+|. .+|+.... . ...+..++..|.++|
T Consensus 471 ~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~------~r~l~~~~---~----~~~i~~~~~~r~~~~ 537 (573)
T 1m8p_A 471 AVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD------KRGIYAAA---R----RGEIKGFTGVDDPYE 537 (573)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC------SSCHHHHH---H----TTSSSSCBTTTBCCC
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHh------cccchhhh---h----HHHHHHHHhcccccc
Confidence 5555421100 01123344554 6 7899999999999993 24443210 0 011223334566777
Q ss_pred h--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 242 A--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 242 ~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
. .++++ |||+.+++++++++|++.+..
T Consensus 538 ~p~~~dl~------------IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 538 TPEKADLV------------VDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp CCSSCSEE------------ECTTTSCHHHHHHHHHHHHHH
T ss_pred ccCCCCEE------------EECCCCCHHHHHHHHHHHHHh
Confidence 5 25544 599999999999999999875
No 115
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.19 E-value=1e-11 Score=123.68 Aligned_cols=68 Identities=26% Similarity=0.399 Sum_probs=59.2
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
..++++|++++|++ ..+|+|+||++++ |+.++|+||||||||||+++|+|.+.| ++|.+. ++|.++.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~---~~g~~~~~ 409 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQ---GKTVALVGRSGSGKSTIANLFTRFYDV---DSGSIC---LDGHDVRD 409 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEE---ECCEEhhh
Confidence 36999999999974 6799999999999 999999999999999999999999998 577664 46766543
No 116
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.18 E-value=8.8e-12 Score=111.34 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=52.9
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
+++++|++++|++ +|+++||++++ ++++|+||||||||||+++|+|.+.| ++|.+. ++|.++
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~----e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~---~~g~~~ 62 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR----DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVR---LNGADI 62 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS----SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEE---ETTEEC
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC----EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE---ECCEEC
Confidence 4789999999986 49999999984 89999999999999999999999988 567664 355444
No 117
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.18 E-value=8.4e-11 Score=115.95 Aligned_cols=123 Identities=21% Similarity=0.235 Sum_probs=83.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccc-----hhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHh------h
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS-----DKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKL------S 162 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~-----d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l------~ 162 (287)
...|+++|++||||||+++.|+..+++.++|+ |.+.++..++..+.++|...+++.|+..+..+...+ .
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~L 114 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSYL 114 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999997777654 888877774445678888788888776555433322 1
Q ss_pred --cCCCeEE--ecCCceEeccccHHhhcC-Cc-EEEEe--cC-HHHHHHHHhhcCCCCCCCcCC
Q 023118 163 --LVPQQVV--ATGGGAVVRPLNWRFMRQ-GI-TVFLN--VP-LDALARRIAAVGTDSFPLLDY 217 (287)
Q Consensus 163 --~~~~~vi--a~ggG~v~~~~~~~~L~~-g~-~I~L~--~~-~e~l~~Ri~~~~~~~RPll~~ 217 (287)
.....|| +++++...+...++.+++ |+ ++||. ++ ++.+.+|+..+. ..+|.+..
T Consensus 115 ~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~-~~rPdl~~ 177 (520)
T 2axn_A 115 AKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK-ISSPDYKD 177 (520)
T ss_dssp HHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT-TTSGGGTT
T ss_pred HhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh-hcCCcccc
Confidence 2344556 555555444444444543 53 45555 45 899999997654 35787764
No 118
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.17 E-value=7.1e-12 Score=112.58 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=53.5
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
+++++|+++. .+|+++||++.+ |++++|+||||||||||+++|+|.+.| + |.+. ++|.++.
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~---Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~---~~g~~~~ 64 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRA---GEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQ---FAGQPLE 64 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEE---ETTEEGG
T ss_pred EEEEEceEEE----EEEeeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEE---ECCEECC
Confidence 6899999987 689999999999 999999999999999999999999988 6 6664 4566553
No 119
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.16 E-value=1.1e-11 Score=123.42 Aligned_cols=68 Identities=25% Similarity=0.403 Sum_probs=59.7
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
..++++|++++|++ +.+|+|+||++++ |+.++|+||||||||||+++|+|.+.| ++|.+. ++|.++.+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~---G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~---~~g~~~~~ 409 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPA---GKTVALVGRSGSGKSTIASLITRFYDI---DEGHIL---MDGHDLRE 409 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECT---TCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEE---ETTEETTT
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcC---CCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEE---ECCEEccc
Confidence 36999999999973 6799999999999 999999999999999999999999998 677664 46776644
No 120
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.14 E-value=2.3e-11 Score=121.72 Aligned_cols=68 Identities=32% Similarity=0.401 Sum_probs=60.1
Q ss_pred cEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|+ +..+|+|+||++++ |+.++|+||||||||||+++|+|.+.| +.|.+. .+|.++.++
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~---~~g~~i~~~ 422 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKP---GQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQIL---VDGIDIRKI 422 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCT---TCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEE---ETTEEGGGS
T ss_pred eEEEEEEEEECCCCCccccceEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEE---ECCEEhhhC
Confidence 599999999996 46799999999999 999999999999999999999999999 677665 478777554
No 121
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.14 E-value=1.5e-11 Score=122.86 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=60.0
Q ss_pred cEEEcceEEEcC--CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLD--GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~--~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|+ +..+|+|+||++++ |+.++|+||||||||||+++|+|.+.| ++|.+. .+|.++.++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~---Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~---i~g~~i~~~ 410 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKP---GSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVE---VDELDVRTV 410 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECT---TCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEE---ESSSBGGGB
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEE---ECCEEcccC
Confidence 599999999994 46799999999999 999999999999999999999999999 677665 477777554
No 122
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.14 E-value=1.7e-11 Score=122.47 Aligned_cols=67 Identities=25% Similarity=0.277 Sum_probs=58.8
Q ss_pred EEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 66 VESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 66 l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
++++|++++|++ .++|+|+||++++ |+.++|+||||||||||+++|+|.+.| ++|.+. ++|.++.++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~---G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~---~~g~~i~~~ 411 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPS---GSVTALVGPSGSGKSTVLSLLLRLYDP---ASGTIS---LDGHDIRQL 411 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECT---TCEEEEECCTTSSSTHHHHHHTTSSCC---SEEEEE---ETTEETTTB
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEE---ECCEEhhhC
Confidence 999999999974 4699999999999 999999999999999999999999998 677665 467766543
No 123
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.14 E-value=3.1e-11 Score=103.38 Aligned_cols=32 Identities=25% Similarity=0.422 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS 125 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~ 125 (287)
|..|+|+|++||||||+++.|+..++..+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 78999999999999999999999887766665
No 124
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.13 E-value=1.9e-10 Score=101.12 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=37.1
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhh--hh-CCeEEeccccccccccccCCC
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAY--AN-ADATVSLLNLAACIGLKDVLD 264 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y--~~-ad~~v~~~~~a~~~~~idt~~ 264 (287)
..+|||++|++++.+|+..|+ |+..... ...| ++++.+.|.+..+.| .. ++..+ ||.+
T Consensus 148 D~vi~Ld~~~e~~~~Ri~~R~---r~~e~~~-~~~~---~~rv~~~~~~~~~~~~~~~~~~~~v-----------Id~~- 208 (230)
T 2vp4_A 148 DLIIYLRTSPEVAYERIRQRA---RSEESCV-PLKY---LQELHELHEDWLIHQRRPQSCKVLV-----------LDAD- 208 (230)
T ss_dssp SEEEEEECCHHHHHHHHHHHC---CGGGTTC-CHHH---HHHHHHHHHHHHTSCCSSCCCEEEE-----------EECC-
T ss_pred CEEEEEeCCHHHHHHHHHHcC---CcccccC-cHHH---HHHHHHHHHHHHHHhcccCCCCEEE-----------EECC-
Confidence 679999999999999998763 3322211 1122 466777777776555 22 33333 6776
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 023118 265 ITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 265 ~t~~eva~~i~~~i~~~l~ 283 (287)
.++++|.++|.+.+++.+.
T Consensus 209 ~~~eev~~~I~~~l~~~~~ 227 (230)
T 2vp4_A 209 LNLENIGTEYQRSESSIFD 227 (230)
T ss_dssp C------------------
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 4999999999999887654
No 125
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.13 E-value=2.7e-11 Score=120.67 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=60.2
Q ss_pred cEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|++++|++ ..+|+|+||++++ |+.++|+||||||||||+++|+|.+.| ++|.+. .+|.++.++
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~---G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~---~~g~~~~~~ 408 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEK---GETVAFVGMSGGGKSTLINLIPRFYDV---TSGQIL---IDGHNIKDF 408 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECT---TCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEE---ETTEEGGGS
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEE---ECCEEhhhC
Confidence 5999999999964 5799999999999 999999999999999999999999999 677665 478777554
No 126
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.12 E-value=5.7e-10 Score=99.71 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=51.3
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHH------hhhh---hCCeEEeccccccccc
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERS------EAYA---NADATVSLLNLAACIG 258 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~------~~Y~---~ad~~v~~~~~a~~~~ 258 (287)
.++|||++|++++.+|+..|+ ||..... ...+ .+.+.+.|+.+. +.|. .....
T Consensus 176 d~vi~L~~~~e~~~~Ri~~R~---r~~~~~~-~~~~---~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~----------- 237 (263)
T 1p5z_B 176 DGIIYLQATPETCLHRIYLRG---RNEEQGI-PLEY---LEKLHYKHESWLLHRTLKTNFDYLQEVPIL----------- 237 (263)
T ss_dssp SEEEEEECCHHHHHHHHHHHC---CGGGTTC-CHHH---HHHHHHHHHHHHTTCCCCCSCGGGGGSCEE-----------
T ss_pred CeEEEEECCHHHHHHHHHhcC---CccccCc-cHHH---HHHHHHHHHHHHhhccchhhhhhhccCCEE-----------
Confidence 579999999999999998764 5543322 1222 344555555442 2332 22222
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHhh
Q 023118 259 LKDVLDITPTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 259 ~idt~~~t~~eva~~i~~~i~~~l~ 283 (287)
+||++. ++++|+++|++.|..++.
T Consensus 238 ~Id~~~-~~eev~~~I~~~l~~~l~ 261 (263)
T 1p5z_B 238 TLDVNE-DFKDKYESLVEKVKEFLS 261 (263)
T ss_dssp EEECCS-CHHHHHHHHHHHHHHHHH
T ss_pred EEECCC-CHHHHHHHHHHHHHHHHh
Confidence 378887 999999999999988764
No 127
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.09 E-value=7.3e-11 Score=103.35 Aligned_cols=38 Identities=26% Similarity=0.163 Sum_probs=22.8
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH-hcc
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS-DAL 118 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La-~~l 118 (287)
.+..+++||++.+ |++++|+||||||||||+++|+ +.+
T Consensus 14 ~~~~~~~sl~v~~---G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSV---GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEEC---CCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCC---CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4578899999999 9999999999999999999999 876
No 128
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.09 E-value=1.4e-10 Score=112.66 Aligned_cols=141 Identities=24% Similarity=0.275 Sum_probs=93.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchh-----HHHHHhCCC-chhhhhhhhchhhhhhhHHHHHHHhhcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDK-----YVEKLMGGT-SVAQIFKESGEAYFREYESKALQKLSLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~-----~ie~~~~G~-~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~ 167 (287)
...|+++|++||||||+++.|+..+++.|++++. +.++.. |. ...++|...|+..||..+..++..+......
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~-g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMV-KTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHH-CSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhc-cCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998887877775 555555 44 4457788888877877776655544322222
Q ss_pred EEecCC-ceEeccccHH---------hhcC-C-cEEEEe---cCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHH
Q 023118 168 VVATGG-GAVVRPLNWR---------FMRQ-G-ITVFLN---VPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSA 232 (287)
Q Consensus 168 via~gg-G~v~~~~~~~---------~L~~-g-~~I~L~---~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~ 232 (287)
+.+++| ++|.+..+.. .+++ + .++||. .+++.+.+|+..+. ..+|.+...+ . ++..+
T Consensus 118 l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~-~~rp~~~~~~---~----e~~~~ 189 (469)
T 1bif_A 118 LSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK-LGSPDYVNRD---S----DEATE 189 (469)
T ss_dssp HHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT-TTSTTTTTSC---H----HHHHH
T ss_pred HHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh-hcCCcccCCC---H----HHHHH
Confidence 333444 4556554432 2332 5 578998 77999999987643 3567665322 1 33446
Q ss_pred HHHHHHhhhhh
Q 023118 233 LSKERSEAYAN 243 (287)
Q Consensus 233 l~~~R~~~Y~~ 243 (287)
.|.+|.+.|+.
T Consensus 190 ~~~~R~~~y~~ 200 (469)
T 1bif_A 190 DFMRRIECYEN 200 (469)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcc
Confidence 66677666654
No 129
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.08 E-value=1.9e-11 Score=121.34 Aligned_cols=150 Identities=21% Similarity=0.326 Sum_probs=86.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC-----ccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHH-HHHHhhcCCCe
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY-----TFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESK-ALQKLSLVPQQ 167 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~-----~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~-~l~~l~~~~~~ 167 (287)
+..|+|+|++||||||+++.|+..++. .|+|+|.+..... +. ..|+..+.. .++.+......
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~-~~-----------~~f~~~er~~~l~~i~~~~~~ 439 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLS-RG-----------LGFSKEDRITNILRVGFVASE 439 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTC-TT-----------CCSSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhc-cc-----------ccccHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999998763 7889887653322 21 111111111 01111100001
Q ss_pred EEecCCceEecc---------ccHHhhcC-C-cEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHH
Q 023118 168 VVATGGGAVVRP---------LNWRFMRQ-G-ITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKE 236 (287)
Q Consensus 168 via~ggG~v~~~---------~~~~~L~~-g-~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~ 236 (287)
++.+|+++|++. .+++.+.+ + ++|||++|++++.+|+. |++.... ....+..++..
T Consensus 440 ~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~------r~~~~~~-------~~~~i~~~~~v 506 (546)
T 2gks_A 440 IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV------KGLYKKA-------KEGLIKGFTGV 506 (546)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC------SSHHHHC-------------CCBTT
T ss_pred HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh------ccccccc-------cHHHHHHHHhh
Confidence 122344444432 12233433 4 78999999999999963 3322110 01123333334
Q ss_pred HHhhhh--hCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHH
Q 023118 237 RSEAYA--NADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQK 280 (287)
Q Consensus 237 R~~~Y~--~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~ 280 (287)
|.+.|. .+|++ ||+++.++++++++|++.+..
T Consensus 507 r~~~e~~~~adiv------------IDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 507 DDPYEPPVAPEVR------------VDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp TBCCCCCSSCSEE------------EETTTSCHHHHHHHHHHHHHH
T ss_pred hhccccccCCcEE------------EECCCCCHHHHHHHHHHHHHH
Confidence 555553 25654 588888999999999998865
No 130
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.07 E-value=1.4e-09 Score=96.67 Aligned_cols=110 Identities=15% Similarity=0.237 Sum_probs=71.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHh-CCC----chhhhhhhhchhhhhhhHHHHHHHhhcCCCeE
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLM-GGT----SVAQIFKESGEAYFREYESKALQKLSLVPQQV 168 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~-~G~----~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~v 168 (287)
...++|+|++||||||+++.|+..++..++++|+++.+.. .|. .+.+++. .|.....+....++++......
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~-- 84 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEAD-- 84 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGG--
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCcc--
Confidence 4679999999999999999999999999999999987753 233 3333332 3544444444444443222110
Q ss_pred EecCCceEec--cccH---Hhhc-----CCcEEEEecCHHHHHHHHhhcC
Q 023118 169 VATGGGAVVR--PLNW---RFMR-----QGITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 169 ia~ggG~v~~--~~~~---~~L~-----~g~~I~L~~~~e~l~~Ri~~~~ 208 (287)
++.|.+++ |.+. +.|. -..+|||++|.+++.+|+..|.
T Consensus 85 --~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 85 --CANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp --GTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred --cCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 12233332 2232 2233 1479999999999999999874
No 131
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.06 E-value=4.5e-12 Score=106.38 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=52.6
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
++..++++.|++..+++++||++++ |++++|+||||||||||+++|++.+ + +.|.+. ..|.++
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~---Ge~v~L~G~nGaGKTTLlr~l~g~l-~---~~G~V~---~~g~~i 70 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEK---AIMVYLNGDLGAGKTTLTRGMLQGI-G---HQGNVK---SPTYTL 70 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSS---CEEEEEECSTTSSHHHHHHHHHHHT-T---CCSCCC---CCTTTC
T ss_pred cCCHHHHHHHHHHHHHhccccccCC---CCEEEEECCCCCCHHHHHHHHHHhC-C---CCCeEE---ECCEee
Confidence 3455678889888899999999999 9999999999999999999999999 6 456554 356554
No 132
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.05 E-value=7.4e-11 Score=127.62 Aligned_cols=68 Identities=26% Similarity=0.276 Sum_probs=60.3
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++||+++|++ .++|+|+||+|++ |+.++|||++|||||||+++|.+.+.| +.|.+. .+|.++.++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~---Ge~vaIVG~SGsGKSTL~~lL~rl~~p---~~G~I~---iDG~di~~i 1146 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEP---GQTLALVGPSGCGKSTVVALLERFYDT---LGGEIF---IDGSEIKTL 1146 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECT---TCEEEEECSTTSSTTSHHHHHTTSSCC---SSSEEE---ETTEETTTB
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECC---CCEEEEECCCCChHHHHHHHHhcCccC---CCCEEE---ECCEEhhhC
Confidence 5999999999953 4699999999999 999999999999999999999999999 567665 478887765
No 133
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.05 E-value=4.2e-11 Score=109.89 Aligned_cols=57 Identities=23% Similarity=0.261 Sum_probs=41.2
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++|+++.+ ..+|+++||++++ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~---Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I 95 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIER---GQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKI 95 (290)
T ss_dssp -----------C--CCSEEEEEEEECT---TCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEE
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcC---CCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEE
Confidence 368999999863 5799999999999 999999999999999999999999987 45544
No 134
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.01 E-value=4.2e-10 Score=100.35 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=70.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhH---------HHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKY---------VEKLMGGTSVAQIFKESGEAYFREYESKALQKLS 162 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~---------ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~ 162 (287)
+..|+|+|+|||||||+++.|++.++ +.|+|+|.+ +.... |.++.+++.. .++.....+++.+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~-g~~~~~~~~~----~~~~~~~~~~~~~~ 106 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEY-GKDSVEYTKD----FAGKMVESLVTKLS 106 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTC-SSTTHHHHHH----HHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHc-CchHHHHhhH----HHHHHHHHHHHHHH
Confidence 78999999999999999999999986 567899987 32222 5555554321 12333344555554
Q ss_pred cC-CCeEEecCCceE-eccccHHhhc-CCc---EEEEecCHHHHHHHHhhc
Q 023118 163 LV-PQQVVATGGGAV-VRPLNWRFMR-QGI---TVFLNVPLDALARRIAAV 207 (287)
Q Consensus 163 ~~-~~~via~ggG~v-~~~~~~~~L~-~g~---~I~L~~~~e~l~~Ri~~~ 207 (287)
.. ...|+.++.+.. ........++ .|. ++|+++|++.+.+|+..|
T Consensus 107 ~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R 157 (253)
T 2p5t_B 107 SLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIR 157 (253)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred hcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHH
Confidence 43 355555544432 2233344454 354 457799999999998765
No 135
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.00 E-value=8.1e-10 Score=94.86 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=33.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC--CccccchhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFADSDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~d~~i 129 (287)
|++|+|+||+|||||||+++|++.++ ..|++.|.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~ 43 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYY 43 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccc
Confidence 89999999999999999999999998 7788888764
No 136
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.99 E-value=2.1e-09 Score=91.45 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=26.7
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++.+ |+.|+|+|||||||||++++|++.+.+
T Consensus 2 ~i~~---g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEK---GLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CC---CCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCC---CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 4566 999999999999999999999998844
No 137
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.95 E-value=4.5e-10 Score=121.50 Aligned_cols=67 Identities=25% Similarity=0.315 Sum_probs=57.9
Q ss_pred cEEEcceEEEcC---CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 65 DVESGTFCDSLD---GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 65 ~l~~~~l~~~~~---~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
.++++|++++|+ +.++|+|+||++++ |+.++|+||+|||||||+++|.+.+.| +.|.+. .+|.++.+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~---G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~---idG~~i~~ 484 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNA---GQTVALVGSSGCGKSTIISLLLRYYDV---LKGKIT---IDGVDVRD 484 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECT---TCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEE---ETTEETTT
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecC---CcEEEEEecCCCcHHHHHHHhcccccc---ccCccc---CCCccchh
Confidence 599999999995 46799999999999 999999999999999999999999999 566554 35655544
No 138
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.95 E-value=2.6e-10 Score=123.09 Aligned_cols=66 Identities=26% Similarity=0.298 Sum_probs=56.6
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA 139 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~ 139 (287)
.++++|++++|++ .++|+|+||++++ |+.++|+||||||||||+++|+|.+.| +.|.+. .+|.++.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~---G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~---i~g~~i~ 455 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKS---GQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVS---IDGQDIR 455 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECT---TCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEE---ETTEEGG
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEE---ECCEEHH
Confidence 5999999999963 4699999999999 999999999999999999999999998 566553 3455443
No 139
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.94 E-value=5.9e-10 Score=99.71 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh--------------------hhhh-hhchhhhhhh
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA--------------------QIFK-ESGEAYFREY 153 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~--------------------~~~~-~~g~~~fr~~ 153 (287)
..|+|+||+|||||||++.||+.++..++++|.+... .|.++. +.+. ..+...|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~--~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~ 79 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCC--PQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR 79 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGC--GGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhcc--CCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH
Confidence 3689999999999999999999999999999986421 122110 0111 2355667766
Q ss_pred HHHHHHHhhcCCCeEEecCCceEeccccHHhhc-----CC---cEEEEecCH-HHHHHHHhhcC
Q 023118 154 ESKALQKLSLVPQQVVATGGGAVVRPLNWRFMR-----QG---ITVFLNVPL-DALARRIAAVG 208 (287)
Q Consensus 154 e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~-----~g---~~I~L~~~~-e~l~~Ri~~~~ 208 (287)
....+ ++......+|.+||+... ...++. .+ .+|||++|. +.+.+|+..|.
T Consensus 80 ~~~~i-~~~~~g~~vIl~gg~~~~---~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 80 LIFEV-DWRKSEEGLILEGGSISL---LNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp HHHHH-HTTTTSSEEEEEECCHHH---HHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHH-HHHhCCCCeEEeccHHHH---HHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 66666 554444455665543211 112222 22 689999997 99999998764
No 140
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.94 E-value=7.7e-09 Score=90.27 Aligned_cols=38 Identities=18% Similarity=0.075 Sum_probs=25.4
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+.-|+++||++++ |++++|+||||||||||+++|++.+
T Consensus 10 ~~~l~~isl~i~~---G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 10 HSSGLVPRGSMNN---IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ------------C---CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cccccCCceecCC---CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999 9999999999999999999999987
No 141
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.94 E-value=2.5e-10 Score=119.65 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=54.7
Q ss_pred ccEEEcceEEEcCC--eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 64 HDVESGTFCDSLDG--KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 64 ~~l~~~~l~~~~~~--~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
++++++|++++|++ +.+|+++||++.+ |++++|+||||||||||+++|+|.+.| ++|.+.
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~---GeivaIiGpNGSGKSTLLklLaGll~P---~sG~I~ 731 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSL---SSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVY 731 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEET---TCEEEECSCCCHHHHHHHHHHTTSSCC---SEEEEE
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEE
Confidence 57999999999964 6799999999999 999999999999999999999999998 566654
No 142
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.93 E-value=6.9e-10 Score=111.37 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCccEEE--------cceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchh
Q 023118 62 NAHDVES--------GTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDK 127 (287)
Q Consensus 62 ~~~~l~~--------~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~ 127 (287)
|..+|++ +|++++|++. .+++++| .+.+ |++++|+||||||||||+++|+|.+.| ++|.
T Consensus 80 p~~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~---Ge~~~LiG~NGsGKSTLlkiL~Gll~p---~~G~ 147 (607)
T 3bk7_A 80 PFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKD---GMVVGIVGPNGTGKTTAVKILAGQLIP---NLCE 147 (607)
T ss_dssp SSCCCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHTTSSCC---CTTT
T ss_pred CcceEEEecCCccccCCeEEEECCCCeeeCCCC-CCCC---CCEEEEECCCCChHHHHHHHHhCCCCC---CCCc
Confidence 3345788 8999999876 4899999 9999 999999999999999999999999988 4555
No 143
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.93 E-value=2.5e-08 Score=88.80 Aligned_cols=80 Identities=14% Similarity=0.158 Sum_probs=47.3
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP 267 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~ 267 (287)
..+|||++|+++..+|+..|+...| ...+ ...| ++++.+.|.+....|. +..+ ||.+ .++
T Consensus 156 Dlvi~Ldv~~e~~~~Ri~~R~~~dr--~E~~-~~~~---~~rv~~~y~~la~~~~--~~~v-----------IDa~-~si 215 (236)
T 3lv8_A 156 DLTLYLDIDPKLGLERARGRGELDR--IEKM-DISF---FERARERYLELANSDD--SVVM-----------IDAA-QSI 215 (236)
T ss_dssp SEEEEEECCHHHHHHC-----CCCT--TTTS-CHHH---HHHHHHHHHHHHHHCT--TEEE-----------EETT-SCH
T ss_pred CEEEEEeCCHHHHHHHHHhcCCcch--hhhh-HHHH---HHHHHHHHHHHHHHCC--CEEE-----------EeCC-CCH
Confidence 6899999999999999987642111 1111 1122 3444444443333222 2333 6876 599
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 023118 268 TTIAMEVLVQAQKYLNSKRR 287 (287)
Q Consensus 268 ~eva~~i~~~i~~~l~~~~~ 287 (287)
++|.++|.+.++.++...+|
T Consensus 216 eeV~~~I~~~l~~~l~~~~~ 235 (236)
T 3lv8_A 216 EQVTADIRRALQDWLSQVNR 235 (236)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 99999999999998876543
No 144
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=3.7e-09 Score=91.37 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|+.|+|+||||||||||++.|++.+++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999999865
No 145
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.91 E-value=5.3e-10 Score=120.67 Aligned_cols=68 Identities=28% Similarity=0.331 Sum_probs=59.8
Q ss_pred cEEEcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhh
Q 023118 65 DVESGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQI 141 (287)
Q Consensus 65 ~l~~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~ 141 (287)
.++++|+++.|++ .++|+|+||++++ |++++|+||||||||||+++|+|.+.| ++|.+. ++|.++..+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~---Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~---i~g~~i~~~ 1100 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKK---GQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVF---LDGKEIKQL 1100 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECS---SSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEE---SSSSCTTSS
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcC---CCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEE---ECCEEcccC
Confidence 5999999999964 3699999999999 999999999999999999999999999 677665 478777544
No 146
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.89 E-value=9.7e-10 Score=108.77 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=47.4
Q ss_pred EEE-cceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchh
Q 023118 66 VES-GTFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDK 127 (287)
Q Consensus 66 l~~-~~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~ 127 (287)
.++ +|++++|++. .+++++| ++.+ |++++|+||||||||||+++|+|.+.| ++|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~---Ge~~~LvG~NGaGKSTLlk~l~Gl~~p---~~G~ 77 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKE---GMVVGIVGPNGTGKSTAVKILAGQLIP---NLCG 77 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHHTSSCC---CTTT
T ss_pred hhHhcCcEEEECCccccccCcC-cCCC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCCc
Confidence 355 6999999876 5899999 9999 999999999999999999999999988 5555
No 147
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.88 E-value=1.4e-09 Score=107.05 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC-------ccccchh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY-------TFADSDK 127 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~-------~fid~d~ 127 (287)
|..|.|+|+|||||||+++.|+..|+. .|+|+|.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 789999999999999999999999986 6888887
No 148
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.87 E-value=3.4e-09 Score=89.81 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
|++++|+||||||||||+++|++.+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999999876
No 149
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.87 E-value=8.4e-08 Score=83.92 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=50.1
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP 267 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~ 267 (287)
..+|||++|+++..+|+..|+...| ...+ ...| ++++.+.|......|. ....+ ||++ .++
T Consensus 133 Dlvi~Ld~~~e~~~~Ri~~R~~~dr--~E~~-~~~~---~~rv~~~y~~l~~~~~-~~~~v-----------IDa~-~s~ 193 (213)
T 4edh_A 133 DLTLVFDLPVEIGLARAAARGRLDR--FEQE-DRRF---FEAVRQTYLQRAAQAP-ERYQV-----------LDAG-LPL 193 (213)
T ss_dssp SEEEEEECCHHHHHHHHCCCSSCCT--TTTS-CHHH---HHHHHHHHHHHHHHCT-TTEEE-----------EETT-SCH
T ss_pred CEEEEEeCCHHHHHHHHHhcCCcCc--cccc-HHHH---HHHHHHHHHHHHHHCC-CcEEE-----------EeCC-CCH
Confidence 6799999999999999987642111 1111 1122 3445555554443342 12333 6876 599
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023118 268 TTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 268 ~eva~~i~~~i~~~l~~ 284 (287)
++|.++|.+.+..++..
T Consensus 194 eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 194 AEVQAGLDRLLPNLLER 210 (213)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 150
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.86 E-value=9.4e-11 Score=108.38 Aligned_cols=50 Identities=18% Similarity=0.086 Sum_probs=47.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+|+++||++.|+ ..+|+++||++++ |++++|+||||||||||+++|++.+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~---Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPK---KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTT---CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEEEEEEcC-hhhhccceEEecC---CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 488999999998 6799999999999 9999999999999999999999976
No 151
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.86 E-value=6.6e-11 Score=111.50 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=67.9
Q ss_pred eeccccceeeccCCCCcE--EEEEcCCCCCHHHHHHHHHhccCCcc--------------------ccchhHHHHHhCCC
Q 023118 79 WLLKAKGREVASCLDGQC--LFLVGMMGSGKTTVGEILSDALDYTF--------------------ADSDKYVEKLMGGT 136 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~--i~LvG~~GsGKSTl~k~La~~l~~~f--------------------id~d~~ie~~~~G~ 136 (287)
.+++.+++.+.+ |+. |+|+||+||||||++++|++.++++| +|.|..+++.. |+
T Consensus 10 ~il~~l~~~i~~---g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~-g~ 85 (359)
T 2ga8_A 10 DVLQLLDNRIED---NYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQ-PN 85 (359)
T ss_dssp HHHHHHHHTTTT---CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECC-HH
T ss_pred HHHHHHHHHhcc---CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHh-Cc
Confidence 367778888887 877 99999999999999999999999999 99999987776 99
Q ss_pred chhhhhhhhchhhhhhhHHHHHHH
Q 023118 137 SVAQIFKESGEAYFREYESKALQK 160 (287)
Q Consensus 137 ~i~~~~~~~g~~~fr~~e~~~l~~ 160 (287)
++.++|...|+ .||..|...++.
T Consensus 86 ~i~~if~~~ge-~fr~~E~~~~~~ 108 (359)
T 2ga8_A 86 KVAEMIENQGL-FKDHVEDVNFQP 108 (359)
T ss_dssp HHHHHHHTTTC-CGGGTTCTTCCC
T ss_pred cHHHHHHHhcc-cchHHHhhhccc
Confidence 99999999999 999998765443
No 152
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.84 E-value=2.7e-09 Score=105.53 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=51.9
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++. .|+.++|++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~---Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~i 343 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKK---GEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKI 343 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHHTSSCC---SBCCC
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEE
Confidence 479999999999875 68999999999 999999999999999999999999988 45544
No 153
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.83 E-value=2.8e-09 Score=107.00 Aligned_cols=58 Identities=24% Similarity=0.265 Sum_probs=52.1
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++|+++.|++. .|+.++|++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~---Gei~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I 413 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRK---GEVIGIVGPNGIGKTTFVKMLAGVEEP---TEGKV 413 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHHTSSCC---SBSCC
T ss_pred eEEEEeceEEEecce-EEEecccccCC---CCEEEEECCCCCCHHHHHHHHhcCCCC---CceEE
Confidence 479999999999864 68999999999 999999999999999999999999988 55554
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.83 E-value=1.3e-08 Score=85.82 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.|+.++|+||||||||||++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999999775
No 155
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.81 E-value=1.1e-08 Score=92.42 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=64.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc-cCCccccchhHHHHHhCCCchh---hhhhhhchhhhhhhHHHHHHHhh---cCCCe
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA-LDYTFADSDKYVEKLMGGTSVA---QIFKESGEAYFREYESKALQKLS---LVPQQ 167 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~-l~~~fid~d~~ie~~~~G~~i~---~~~~~~g~~~fr~~e~~~l~~l~---~~~~~ 167 (287)
..|+|+|++||||||+++.|+.. +++.++++|.+.+... +.+.. .+. ..++..+.....+.+.... .....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~-~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIM-AHEERDEYKYT-KKKEGIVTGMQFDTAKSILYGGDSVKG 80 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHT-TSCCCC---CC-HHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhc-cCCcccccccc-hhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence 47899999999999999999986 4899999997765544 32110 111 1122222222222333332 22223
Q ss_pred EEecCCceEeccccHHhh----c-CC---cEEEEecCHHHHHHHHhhcC
Q 023118 168 VVATGGGAVVRPLNWRFM----R-QG---ITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 168 via~ggG~v~~~~~~~~L----~-~g---~~I~L~~~~e~l~~Ri~~~~ 208 (287)
++..|.. .....+..+ . .+ .+|||++|++.+.+|+..|.
T Consensus 81 vi~d~~~--~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 81 VIISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp EEECSCC--CCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred EEEeCCC--CCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 3333321 111112222 1 23 68999999999999998764
No 156
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.78 E-value=1.9e-07 Score=81.67 Aligned_cols=77 Identities=13% Similarity=0.165 Sum_probs=49.1
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP 267 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~ 267 (287)
..+|||++|+++..+|+..|+...| .... ...| ++++.+.|.+-...| ..+.+ ||.+ .++
T Consensus 134 Dl~i~Ldv~~e~~~~Ri~~R~~~dr--~E~~-~~~f---~~rv~~~y~~la~~~--~~~~v-----------IDa~-~s~ 193 (213)
T 4tmk_A 134 DLTLYLDVTPEVGLKRARARGELDR--IEQE-SFDF---FNRTRARYLELAAQD--KSIHT-----------IDAT-QPL 193 (213)
T ss_dssp SEEEEEECCHHHHHHHHHHHSSCCT--TTTS-CHHH---HHHHHHHHHHHHHTC--TTEEE-----------EETT-SCH
T ss_pred CEEEEEeCCHHHHHHHHHhcCCccc--hhhh-HHHH---HHHHHHHHHHHHHHC--CcEEE-----------ECCC-CCH
Confidence 6799999999999999988753111 1111 1122 234444444332222 22333 7876 599
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023118 268 TTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 268 ~eva~~i~~~i~~~l~~ 284 (287)
++|.++|.+.+.+++..
T Consensus 194 eeV~~~I~~~l~~~l~~ 210 (213)
T 4tmk_A 194 EAVMDAIRTTVTHWVKE 210 (213)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 157
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.78 E-value=5e-09 Score=103.72 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=51.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.+++++++++.|++. .|...|+++.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 268 ~~l~~~~l~~~~~~~-~l~~~~~~i~~---Gei~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i 325 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDF-QLVVDNGEAKE---GEIIGILGPNGIGKTTFARILVGEITA---DEGSV 325 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEET---TCEEEEECCTTSSHHHHHHHHTTSSCC---SBCCE
T ss_pred ceEEEcceEEEECCE-EEEeccceECC---CCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEE
Confidence 468999999999874 47778999999 999999999999999999999999998 56655
No 158
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.76 E-value=3.2e-07 Score=79.64 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=44.0
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCC-cchhhHHHHHHHHHHHHHHhhhhhC--CeEEeccccccccccccCCC
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDS-ADSYTKAFTALSALSKERSEAYANA--DATVSLLNLAACIGLKDVLD 264 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~-~~~~~~~~~~l~~l~~~R~~~Y~~a--d~~v~~~~~a~~~~~idt~~ 264 (287)
.++|||++|+++..+|+..++.. .-..+. ...| ++.+.+.|.+ +.+.. .+.+ ||.+
T Consensus 126 Dl~i~Ld~~~e~~~~Ri~~r~~~---~dr~e~~~~~f---~~~v~~~Y~~---l~~~~~~~~~~-----------IDa~- 184 (205)
T 4hlc_A 126 DLTIYLNVSAEVGRERIIKNSRD---QNRLDQEDLKF---HEKVIEGYQE---IIHNESQRFKS-----------VNAD- 184 (205)
T ss_dssp SEEEEEECCHHHHHHHHHC----------CCHHHHHH---HHHHHHHHHH---HHHSCCTTEEE-----------EETT-
T ss_pred CEEeeeCCCHHHHHHHHHhcCCc---ccchhccCHHH---HHHHHHHHHH---HHHhCCCCEEE-----------EECC-
Confidence 67999999999999999865421 100110 0111 1223333322 22221 2333 7876
Q ss_pred CCHHHHHHHHHHHHHHHhhh
Q 023118 265 ITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 265 ~t~~eva~~i~~~i~~~l~~ 284 (287)
.++++|.++|.+.|.++|+.
T Consensus 185 ~~~e~V~~~i~~~i~~~L~~ 204 (205)
T 4hlc_A 185 QPLENVVEDTYQTIIKYLEK 204 (205)
T ss_dssp SCHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 59999999999999988763
No 159
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.74 E-value=9.3e-09 Score=107.85 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=46.0
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.+...|+++.|+++.+|+++||++.+ |++++|+||||||||||+++|++
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~---Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKR---ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEET---TCEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEeeEEEEECCEEeEecceEEEcC---CCEEEEECCCCCCHHHHHHHHhC
Confidence 46677999999999999999999999 99999999999999999999984
No 160
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.74 E-value=1.4e-08 Score=97.26 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhhhhhhhchhhhhhhHHHHHHHhhcCCCeEEecCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQIFKESGEAYFREYESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~via~gg 173 (287)
...|+|+|++||||||+++.|+..+++.|++.|.+- .|+.....+.+.+......|+.+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~~~ 318 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------------------SWQRCVSSCQAALRQGKRVVIDNTN 318 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------------------SHHHHHHHHHHHHHTTCCEEEESCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------------------HHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 578999999999999999999999999999998851 1222233334444444444544433
Q ss_pred ceE-eccccHHhhcC-C---cEEEEecCHHHHHHHHhhcC
Q 023118 174 GAV-VRPLNWRFMRQ-G---ITVFLNVPLDALARRIAAVG 208 (287)
Q Consensus 174 G~v-~~~~~~~~L~~-g---~~I~L~~~~e~l~~Ri~~~~ 208 (287)
+.. .+...++++++ + .+|||++|.+++.+|+..|.
T Consensus 319 ~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~ 358 (416)
T 3zvl_A 319 PDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFRE 358 (416)
T ss_dssp CSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhc
Confidence 221 11122222322 3 68999999999999998764
No 161
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.74 E-value=5.4e-08 Score=85.52 Aligned_cols=167 Identities=14% Similarity=0.191 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCc-----cccchh----HHHHHhCCC--chhhh--hhhhchhhhhhhHHHHHH
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYT-----FADSDK----YVEKLMGGT--SVAQI--FKESGEAYFREYESKALQ 159 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~-----fid~d~----~ie~~~~G~--~i~~~--~~~~g~~~fr~~e~~~l~ 159 (287)
+|..|+|.|++||||||+++.|+..++.. +-.++. .+.+.+.+. .+... .-..-.+.+. ....+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~-~~~~I~p 82 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWE-IVDKIKK 82 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHT-THHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 38999999999999999999999988751 111121 132222111 11100 0000011111 1112222
Q ss_pred HhhcCCCeEEec-----------CCceEeccccHHhhc--------CCcEEEE-ecCHHHHHHHHhhcCCCCCCCcCCCC
Q 023118 160 KLSLVPQQVVAT-----------GGGAVVRPLNWRFMR--------QGITVFL-NVPLDALARRIAAVGTDSFPLLDYDS 219 (287)
Q Consensus 160 ~l~~~~~~via~-----------ggG~v~~~~~~~~L~--------~g~~I~L-~~~~e~l~~Ri~~~~~~~RPll~~~~ 219 (287)
.+.. ...||+. ++| .....+..+. ..++||| ++|+++..+|+..++ .| + +.
T Consensus 83 aL~~-g~~VI~DRy~~S~~ayq~~~~--l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~--dr-~---E~ 153 (216)
T 3tmk_A 83 DLLE-GKNIVMDRYVYSGVAYSAAKG--TNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGD--ER-Y---ET 153 (216)
T ss_dssp HHHT-TCEEEEESCHHHHHHHHHTTC--CTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSC--CT-T---CC
T ss_pred HHHc-CCEEEEeccHhHHHHHHHhcC--CCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCc--cc-c---cH
Confidence 2322 2334432 111 1112222221 2579999 999999999975322 11 1 11
Q ss_pred cchhhHHHHHHHHHHHHHHhh---hhhCCeEEeccccccccccccCCCCCHHHHHHHHHHHHHHHhhh
Q 023118 220 ADSYTKAFTALSALSKERSEA---YANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNS 284 (287)
Q Consensus 220 ~~~~~~~~~~l~~l~~~R~~~---Y~~ad~~v~~~~~a~~~~~idt~~~t~~eva~~i~~~i~~~l~~ 284 (287)
..| ++++.+.|.+.-.. |....+.+ ||+...++++|.++|.+.|...+..
T Consensus 154 -~~f---~~rvr~~Y~~la~~~~~~~~~~~~v-----------ID~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 154 -VKF---QEKVKQTFMKLLDKEIRKGDESITI-----------VDVTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp -HHH---HHHHHHHHHHHHHHHHHTTCCSEEE-----------EECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred -HHH---HHHHHHHHHHHHHhccccCCCCEEE-----------EeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 223 35555555554443 22234444 7866689999999999999988764
No 162
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.72 E-value=1.1e-07 Score=84.04 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
|..|+|.|++||||||+++.|+..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 8999999999999999999999988544
No 163
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.72 E-value=1.2e-08 Score=87.92 Aligned_cols=27 Identities=41% Similarity=0.480 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|++++|+||||||||||+++|++.+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999863
No 164
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.70 E-value=2.5e-09 Score=100.33 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=49.8
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++.+++++.|+ +..+++++ |.+.+ |++++|+||||||||||+++|++...+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~---Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGI---GQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEET---TCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCeeecccceecCCCCEEEEee-eeecC---CCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3688999999998 67899999 99999 999999999999999999999999988
No 165
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.70 E-value=1.6e-09 Score=104.78 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=52.4
Q ss_pred ccEEEcceEEEcC-CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 64 HDVESGTFCDSLD-GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 64 ~~l~~~~l~~~~~-~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++.+++++.|+ +..+|+++ |.+.+ |++++|+||||||||||+++|++...+ |.+.+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~---Gq~~~IvG~sGsGKSTLl~~Iag~~~~---~~G~i 188 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGR---GQRMGLFAGSGVGKSVLLGMMARYTRA---DVIVV 188 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBT---TCEEEEEECTTSSHHHHHHHHHHHSCC---SEEEE
T ss_pred CceEEeccceecCCCceEEeee-EEecC---CCEEEEECCCCCCHHHHHHHHhcccCC---CeEEE
Confidence 4689999999997 67899999 99999 999999999999999999999999988 55544
No 166
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.70 E-value=1.3e-08 Score=95.23 Aligned_cols=103 Identities=13% Similarity=0.152 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhH--HHHHhCCCch--------------------hhhhhhhchhhhhh
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY--VEKLMGGTSV--------------------AQIFKESGEAYFRE 152 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~--ie~~~~G~~i--------------------~~~~~~~g~~~fr~ 152 (287)
..|+|+||+|||||||++.|+..++..+|+.|.+ + .+.++ .+.........|+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvY----r~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~ 83 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVY----QGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKK 83 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTB----TTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccccccc----ccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHH
Confidence 4799999999999999999999999889999987 2 23222 11222445667777
Q ss_pred hHHHHHHHhhcCCCeEEecCCceEeccccHHhhcCCcEEEEe-cCHHH---HHHHHh
Q 023118 153 YESKALQKLSLVPQQVVATGGGAVVRPLNWRFMRQGITVFLN-VPLDA---LARRIA 205 (287)
Q Consensus 153 ~e~~~l~~l~~~~~~via~ggG~v~~~~~~~~L~~g~~I~L~-~~~e~---l~~Ri~ 205 (287)
.....+.++......+|.+||+.+.. +.+..++.+|.+ .+++. +.+|+.
T Consensus 84 ~a~~~i~~i~~~g~~~IlvGGt~ly~----~~l~~~l~~~~~~~d~~~~~Rlrrrl~ 136 (340)
T 3d3q_A 84 RAEKYIKDITRRGKVPIIAGGTGLYI----QSLLYNYAFEDESISEDKMKQVKLKLK 136 (340)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHH----HHHHBCSCCC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEECChhhhH----HHHHhcccccCCCCChHHHHHHHHHHH
Confidence 77777777765566788888754432 233345557888 88873 555553
No 167
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.70 E-value=3.1e-08 Score=90.22 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=64.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc--CCccccchhHHHHHhCCC-chhhhhh----hhchhhhhhhHHHHHHHhh-cCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL--DYTFADSDKYVEKLMGGT-SVAQIFK----ESGEAYFREYESKALQKLS-LVP 165 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l--~~~fid~d~~ie~~~~G~-~i~~~~~----~~g~~~fr~~e~~~l~~l~-~~~ 165 (287)
+..|+|+|||||||||+++.|+..+ ++.+|++|.+..... |. .+..-+. ......+.......+.++. ...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~ 111 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP-NFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGY 111 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTST-THHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhch-hhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 7889999999999999999999888 778899988752211 10 0000000 0011233333333444433 333
Q ss_pred CeEEecCCceEe-ccccHHhhcC-Cc---EEEEecCHHHH----HHHHhhc
Q 023118 166 QQVVATGGGAVV-RPLNWRFMRQ-GI---TVFLNVPLDAL----ARRIAAV 207 (287)
Q Consensus 166 ~~via~ggG~v~-~~~~~~~L~~-g~---~I~L~~~~e~l----~~Ri~~~ 207 (287)
..|+.++.+... .....+.+++ |. ++|+.+|++.. .+|+..+
T Consensus 112 ~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R 162 (287)
T 1gvn_B 112 NLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETM 162 (287)
T ss_dssp CEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHH
Confidence 444443332211 1122333443 43 68999999999 8888643
No 168
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.69 E-value=3.8e-07 Score=80.10 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
|..|+|.|++||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999999988
No 169
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.62 E-value=1.4e-08 Score=94.53 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=63.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCc--------------------hhhhhhhhchhhhhhhH
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTS--------------------VAQIFKESGEAYFREYE 154 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~--------------------i~~~~~~~g~~~fr~~e 154 (287)
..|+|+||+|||||||++.||..++..+++.|.+.. ..|++ +.+.+...+...|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv--y~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI--YRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT--BTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh--hcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 479999999999999999999999999999998741 12444 23345567788899999
Q ss_pred HHHHHHhhcCCCeEEecCCce
Q 023118 155 SKALQKLSLVPQQVVATGGGA 175 (287)
Q Consensus 155 ~~~l~~l~~~~~~via~ggG~ 175 (287)
...++++......+|.+||+.
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHHHcCCeEEEECCch
Confidence 999998877777888888753
No 170
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.57 E-value=2.6e-09 Score=98.19 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=45.5
Q ss_pred cEEEcceEEEcCCeeeccccceee-------------------ccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREV-------------------ASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i-------------------~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++++++|++.|+ ++++++++.+ .+ |++|+|+||+|||||||+++|++.++
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~---g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRI---PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCC---CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCC---CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999994 6889999987 66 99999999999999999999999887
No 171
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.6e-08 Score=98.91 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=42.9
Q ss_pred ceEEEcCCe-eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 70 TFCDSLDGK-WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 70 ~l~~~~~~~-~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++|+.. ..+++++ .+.+ |++++|+||||||||||+++|+|.+.| ++|.+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~---Gei~~LvGpNGaGKSTLLkiL~Gll~P---~~G~i 134 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRP---GQVLGLVGTNGIGKSTALKILAGKQKP---NLGRF 134 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCT---TSEEEEECCTTSSHHHHHHHHHTSSCC---CTTTT
T ss_pred CeEEEECCCceeecCCC-CCCC---CCEEEEECCCCChHHHHHHHHhcCCCC---CCceE
Confidence 578888753 3566665 5778 999999999999999999999999998 56654
No 172
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.55 E-value=3.4e-09 Score=92.55 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=37.7
Q ss_pred EEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 73 DSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 73 ~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++|+.+.+|+++ .+ |++++|+||||||||||+++|+|. .| ++|.+
T Consensus 8 k~~g~~~~l~~i----~~---Ge~~~liG~nGsGKSTLl~~l~Gl-~p---~~G~I 52 (208)
T 3b85_A 8 KTLGQKHYVDAI----DT---NTIVFGLGPAGSGKTYLAMAKAVQ-AL---QSKQV 52 (208)
T ss_dssp CSHHHHHHHHHH----HH---CSEEEEECCTTSSTTHHHHHHHHH-HH---HTTSC
T ss_pred CCHhHHHHHHhc----cC---CCEEEEECCCCCCHHHHHHHHhcC-CC---cCCee
Confidence 456667788885 77 999999999999999999999998 65 55554
No 173
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.52 E-value=2.5e-07 Score=81.68 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=38.2
Q ss_pred CCcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCC
Q 023118 187 QGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDIT 266 (287)
Q Consensus 187 ~g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t 266 (287)
-..+|||++|+++..+|+ .+ .| .... +..| ++++.+.|.+....|.. ...+ ||.+ .+
T Consensus 146 PDl~I~Ldv~~e~~~~Ri-~r---dr--~E~~-~~e~---~~rv~~~y~~la~~~~~-~~~v-----------IDa~-~s 202 (223)
T 3ld9_A 146 PDITFIIDVDINESLSRS-CK---NG--YEFA-DMEF---YYRVRDGFYDIAKKNPH-RCHV-----------ITDK-SE 202 (223)
T ss_dssp CSEEEEEECC-----------------------CHHH---HHHHHHHHHHHHHHCTT-TEEE-----------EESS-CS
T ss_pred CCeEEEEeCCHHHHHHHh-cc---Cc--cccc-hHHH---HHHHHHHHHHHHHHCCC-CEEE-----------EcCC-CC
Confidence 378999999999999998 32 12 1111 1222 45566666665555532 2333 6775 59
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023118 267 PTTIAMEVLVQAQKYLN 283 (287)
Q Consensus 267 ~~eva~~i~~~i~~~l~ 283 (287)
+++| ++|.+.+.+.+.
T Consensus 203 ieeV-~~I~~~l~~~lg 218 (223)
T 3ld9_A 203 TYDI-DDINFVHLEVIK 218 (223)
T ss_dssp SSCC-CHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHh
Confidence 9999 999999987764
No 174
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.50 E-value=5.5e-08 Score=81.50 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=28.2
Q ss_pred ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
++||++++ |++++|+||||||||||++.+.+
T Consensus 1 ~vsl~i~~---gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 1 SMKLTIPE---LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp CEEEEEES---SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CccccCCC---CEEEEEECCCCCCHHHHHHHHcc
Confidence 57999999 99999999999999999997553
No 175
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.50 E-value=2.6e-09 Score=99.68 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=48.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++++++.|+...+++++++++.+ |++++|+|+||||||||++.|++.+.+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~---g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGR---AIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCC---SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHeeCCcccccChHHHHHhCCcccCC---CeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 57888999999877899999999999 999999999999999999999988755
No 176
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.49 E-value=5.4e-08 Score=83.72 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=26.0
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
..+++| .++.+ |++++|+||||||||||+++|++.+.
T Consensus 9 ~~~~~~--~~i~~---Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 9 KPTARG--QPAAV---GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ------------C---CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CcCCCC--CCCCC---CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 446666 68888 99999999999999999999999984
No 177
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.49 E-value=1.5e-08 Score=91.38 Aligned_cols=48 Identities=17% Similarity=0.031 Sum_probs=40.5
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++++++. .+|++++ +.+ |+.++|+|||||||||++++|++.+.+
T Consensus 4 ~~~~l~~l~~~----~vl~~i~--i~~---g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 4 EIPEFKKLGLP----DKVLELC--HRK---MGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp --CCGGGSSCC----THHHHGG--GCS---SEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCChHHCCCH----HHHHHHh--hCC---CCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 34667777754 4899999 888 999999999999999999999998876
No 178
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.48 E-value=2.5e-08 Score=96.07 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=40.7
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcE--EEEEcCCCCCHHHHHHHHHhcc
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQC--LFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~--i~LvG~~GsGKSTl~k~La~~l 118 (287)
.+++.+ ++.|++.+ ++++||++.+ |++ ++|+|+||||||||+++|+|..
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~---Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQ---GFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC----CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCee-cCCCceEecC---CCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 467777 88998877 9999999999 999 9999999999999999999974
No 179
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.9e-09 Score=102.60 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=43.8
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++++++|+++.|+ +++|++.+ |++++|+||||||||||+|+|+|.+.+
T Consensus 117 ~mi~~~nl~~~y~------~vsl~i~~---Ge~v~IvGpnGsGKSTLlr~L~Gl~~p 164 (460)
T 2npi_A 117 TMKYIYNLHFMLE------KIRMSNFE---GPRVVIVGGSQTGKTSLSRTLCSYALK 164 (460)
T ss_dssp THHHHHHHHHHHH------HHHHHSSS---CCCEEEEESTTSSHHHHHHHHHHTTHH
T ss_pred chhhhhhhhehhh------cCceEeCC---CCEEEEECCCCCCHHHHHHHHhCcccc
Confidence 4688999999986 79999999 999999999999999999999999843
No 180
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.46 E-value=1.5e-07 Score=87.54 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=38.4
Q ss_pred ceEEEcCCeeeccccceeeccCCCCc------EEEEEcCCCCCHHHHHHHHHhccC
Q 023118 70 TFCDSLDGKWLLKAKGREVASCLDGQ------CLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 70 ~l~~~~~~~~il~~~s~~i~~~l~g~------~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.+++.|++.+.+++++..+.. +. +|+|+||+||||||+++.|++.+.
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~---~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLG---KPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHhhcchHHHHHHHHHHhc---cCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345566777788888877765 43 899999999999999999999886
No 181
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.45 E-value=7e-09 Score=95.89 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=43.1
Q ss_pred cEEEcceEEEcCCeeecccccee-----------------------eccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 65 DVESGTFCDSLDGKWLLKAKGRE-----------------------VASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~-----------------------i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.|++++|++.|+ ++++++++. +.+ |++|+|+||||||||||+++|++.+.+
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPV---PFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCC---CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCC---CEEEEEECCCCchHHHHHHHHHhhccc
Confidence 588999999995 456665554 666 999999999999999999999998865
No 182
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.1e-07 Score=95.38 Aligned_cols=50 Identities=28% Similarity=0.262 Sum_probs=44.2
Q ss_pred cceEEEcCC-eeeccccceeeccCCCC-----cEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 69 GTFCDSLDG-KWLLKAKGREVASCLDG-----QCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 69 ~~l~~~~~~-~~il~~~s~~i~~~l~g-----~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.++++.|++ ..++++++|++.+ | ++++|+||||||||||+++|+|.+.|.
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~---G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEE---GEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECC---EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred cceeEEecCcccccCceEEEEec---CccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 667788865 4689999999988 6 789999999999999999999999883
No 183
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.44 E-value=5.4e-07 Score=77.15 Aligned_cols=25 Identities=40% Similarity=0.442 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
|.+|+|+|++||||||+++.|++.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999999976
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.43 E-value=4.2e-08 Score=83.28 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=35.2
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+++++|+++.|+ ..++++ |.+.+ |..++|+|++|||||||++.|++..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~---~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDT---GIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSC---SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred chhhhhhhheee-cCCHhH--CCCCC---CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999997 467877 88888 9999999999999999999998865
No 185
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.43 E-value=1.2e-08 Score=94.87 Aligned_cols=52 Identities=19% Similarity=0.197 Sum_probs=43.6
Q ss_pred EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++++++ | ..+++++++.+++ |+.++|+||+|||||||+++|++.+.+ +.|.+
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~---g~~v~i~G~~GsGKTTll~~l~g~~~~---~~g~i 202 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAI---GKNVIVCGGTGSGKTTYIKSIMEFIPK---EERII 202 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHH---TCCEEEEESTTSCHHHHHHHGGGGSCT---TSCEE
T ss_pred cCchhh-H--HHHHhhhhhhccC---CCEEEEECCCCCCHHHHHHHHhCCCcC---CCcEE
Confidence 444444 4 3488999999999 999999999999999999999999988 45554
No 186
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.40 E-value=2.4e-06 Score=73.59 Aligned_cols=72 Identities=10% Similarity=0.154 Sum_probs=43.2
Q ss_pred CcEEEEecCHHHHHHHHhhcCCCCCCCcCCCCcchhhHHHHHHHHHHHHHHhhhhhCCeEEeccccccccccccCCCCCH
Q 023118 188 GITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITP 267 (287)
Q Consensus 188 g~~I~L~~~~e~l~~Ri~~~~~~~RPll~~~~~~~~~~~~~~l~~l~~~R~~~Y~~ad~~v~~~~~a~~~~~idt~~~t~ 267 (287)
..+|||++|++...+|...++ | . +.. .| ++.+.+.|.+....|. ..+.+ ||.+ .++
T Consensus 123 Dl~i~Ld~~~e~~~~R~~~~d---r--~--e~~-ef---~~rv~~~y~~la~~~~-~~~~~-----------IDa~-~~~ 178 (197)
T 3hjn_A 123 DLTFYIDVDVETALKRKGELN---R--F--EKR-EF---LERVREGYLVLAREHP-ERIVV-----------LDGK-RSI 178 (197)
T ss_dssp SEEEEEECCHHHHHHHC---C---T--T--CCH-HH---HHHHHHHHHHHHHHCT-TTEEE-----------EETT-SCH
T ss_pred CceeecCcChHHHHHhCcCcC---c--c--ccH-HH---HHHHHHHHHHHHHhCC-CCEEE-----------EcCC-CCH
Confidence 679999999999999954321 2 1 111 22 3444444443322221 12333 6876 599
Q ss_pred HHHHHHHHHHHHHHhh
Q 023118 268 TTIAMEVLVQAQKYLN 283 (287)
Q Consensus 268 ~eva~~i~~~i~~~l~ 283 (287)
++|.++|++.|++.++
T Consensus 179 eeV~~~I~~~i~~rl~ 194 (197)
T 3hjn_A 179 EEIHRDVVREVKRRWK 194 (197)
T ss_dssp HHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999987654
No 187
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.38 E-value=2.7e-08 Score=93.60 Aligned_cols=56 Identities=25% Similarity=0.240 Sum_probs=46.3
Q ss_pred EEcceEEE---cCC--eeec---------cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 67 ESGTFCDS---LDG--KWLL---------KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 67 ~~~~l~~~---~~~--~~il---------~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
+++++++. |+. ..+| +++++.+++ |+.++|+||+|||||||+++|++.+.+ +.+.+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~---G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I 206 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQL---ERVIVVAGETGSGKTTLMKALMQEIPF---DQRLI 206 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHT---TCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEE
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhc---CCEEEEECCCCCCHHHHHHHHHhcCCC---CceEE
Confidence 56777777 742 3344 999999999 999999999999999999999999988 45544
No 188
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.37 E-value=2.5e-07 Score=91.49 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=40.5
Q ss_pred cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
++.+++||.. -|+-..+.+.+ .|++++|+||||||||||+|+|+|.+.| +.|.+
T Consensus 3 ~~~~~~~~~~-~f~l~~l~~~~--~Gei~gLiGpNGaGKSTLlkiL~Gl~~p---~~G~i 56 (538)
T 3ozx_A 3 GEVIHRYKVN-GFKLFGLPTPK--NNTILGVLGKNGVGKTTVLKILAGEIIP---NFGDP 56 (538)
T ss_dssp CCEEEESSTT-SCEEECCCCCC--TTEEEEEECCTTSSHHHHHHHHTTSSCC---CTTCT
T ss_pred CCCceecCCC-ceeecCCCCCC--CCCEEEEECCCCCcHHHHHHHHhcCCCC---CCCcc
Confidence 3567888732 23334455443 3999999999999999999999999998 55654
No 189
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.36 E-value=1.3e-07 Score=92.40 Aligned_cols=53 Identities=23% Similarity=0.042 Sum_probs=44.9
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchhh
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVAQ 140 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~~ 140 (287)
..+|+++||++++ ++++|+||||||||||+++|+|.+.| ++|.+. ++|.++..
T Consensus 17 ~~~l~~vsl~i~~----e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~---~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE----LVTTLSGGNGAGKSTTMAGFVTALIP---DLTLLN---FRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS----SEEEEECCTTSSHHHHHHHHHHHHCC---CTTTCC---CCCTTSCS
T ss_pred cccccceEEEEcc----ceEEEECCCCCcHHHHHHHHhcCCCC---CCCEEE---ECCEEccc
Confidence 4579999999985 89999999999999999999999998 677765 46766643
No 190
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.36 E-value=6e-08 Score=95.32 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=45.1
Q ss_pred ccEEEcceEEEcCCeeeccccce-eeccCCCCcEEEEEcCCCCCHHHHHHH--HHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGR-EVASCLDGQCLFLVGMMGSGKTTVGEI--LSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~-~i~~~l~g~~i~LvG~~GsGKSTl~k~--La~~l~~ 120 (287)
.+++.+++.+..++..+|+++++ .+++ |++++|+||||||||||++. +++.+.+
T Consensus 11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~---Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~ 67 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIEGFDDISHGGLPI---GRSTLVSGTSGTGKTLFSIQFLYNGIIEF 67 (525)
T ss_dssp ---CCSSCCEECCCCTTHHHHTTSSEET---TSEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccCCchhHHHhcCCCCCC---CeEEEEEcCCCCCHHHHHHHHHHHHHHhC
Confidence 34666777766667889999999 9999 99999999999999999999 6787765
No 191
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.33 E-value=2e-07 Score=94.22 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=30.2
Q ss_pred CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118 77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111 (287)
Q Consensus 77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~ 111 (287)
...+|+++||+|++ |++++|+||||||||||+
T Consensus 30 ~~~~L~~vsl~i~~---Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 30 RAHNLKNIDVEIPR---GKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSTTCCSEEEEEET---TSEEEEECSTTSSHHHHH
T ss_pred CccceeccEEEECC---CCEEEEECCCCCCHHHHh
Confidence 45689999999999 999999999999999997
No 192
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.31 E-value=7.7e-08 Score=92.33 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=40.4
Q ss_pred eeeccccceeeccCCCCc--------------------EEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 78 KWLLKAKGREVASCLDGQ--------------------CLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~--------------------~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..+++++++++++ |+ +++|+||||||||||+++|+|.+.+ +.|.+
T Consensus 36 ~~~l~~is~~i~~---Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p---~~GsI 100 (413)
T 1tq4_A 36 QEILNLIELRMRA---GNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE---EEGAA 100 (413)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT---STTSC
T ss_pred HHHhhhccceecC---CCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc---cCceE
Confidence 4589999999999 99 9999999999999999999999887 45544
No 193
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.31 E-value=9.4e-07 Score=80.61 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC-----CccccchhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD-----YTFADSDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~-----~~fid~d~~i 129 (287)
+..|+|.|++||||||+++.|+..++ ..++|+|.+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 56899999999999999999999877 6789999875
No 194
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.29 E-value=7.5e-08 Score=88.57 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=38.3
Q ss_pred ceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 70 TFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 70 ~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+...++....+.+++|++.+ |++++|+|||||||||+++.|++.+.+
T Consensus 79 ~l~~~l~~~~~~~~l~~~~~~---g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 79 SVLEMLAKKNSKTELQLGFRK---PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp HHHHHHCC--CCCSCCCCSSS---CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccccccccCC---CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 344445544445678999998 999999999999999999999999876
No 195
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.27 E-value=8.7e-06 Score=70.46 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.|+.|+|+||||||||||++.|++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 399999999999999999999998765
No 196
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.23 E-value=2.2e-07 Score=83.97 Aligned_cols=45 Identities=24% Similarity=0.378 Sum_probs=39.4
Q ss_pred EcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118 74 SLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA 123 (287)
Q Consensus 74 ~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi 123 (287)
.++...+++++++.+++ | ++|+||||||||||+++||+.+++.|+
T Consensus 29 ~~~~~~~l~~~~l~~~~---G--vlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 29 PVRNPDQFKALGLVTPA---G--VLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp HHHSHHHHHHTTCCCCS---E--EEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred HhhCHHHHHHcCCCCCC---e--EEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 34556689999999988 7 999999999999999999999988764
No 197
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.22 E-value=7.1e-08 Score=82.37 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.|+|+|++||||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 198
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.22 E-value=4.6e-07 Score=86.99 Aligned_cols=48 Identities=21% Similarity=0.109 Sum_probs=38.6
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++|++++|++..++++++|+| +|+|+||+|||||++.|++...+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCCCC
T ss_pred CcEEEEecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCCCC
Confidence 4689999999999888999999876 89999999999999999998753
No 199
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.19 E-value=1.3e-07 Score=83.45 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=45.9
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
.+++++.+.|+...+++++++.+++ | ++|+||+|||||||++.|++.++..|+.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~---g--~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCS---E--EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCC---e--EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4566777777767789999999988 7 9999999999999999999998877654
No 200
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.18 E-value=9.3e-08 Score=88.50 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=46.5
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCC-------cEEEEEcCCCCCHHHHHHHHHhccCCcc
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDG-------QCLFLVGMMGSGKTTVGEILSDALDYTF 122 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g-------~~i~LvG~~GsGKSTl~k~La~~l~~~f 122 (287)
++.++++..||...+++++++.+.+ | ++++|+||+|+|||||+++|++.++..|
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~---~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEA---AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHH---HHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred cCCccHHHccCcHHHHHHHHHHHHH---HHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 5667777788888899999998876 5 7899999999999999999999986654
No 201
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.14 E-value=1.9e-07 Score=83.83 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=45.9
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
.+++++.+.|+...+++++++.+++ | ++|+||+|||||||++.|++.++..|+.
T Consensus 50 ~~l~~l~~~~~~~~~l~~~~~~~~~---g--vll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 50 EELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCC---E--EEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCC---e--EEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 3456777777777789999999988 7 9999999999999999999998877654
No 202
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.14 E-value=1.8e-07 Score=89.86 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=43.8
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.++++++++.|+...+|+++ +. .+ |+.++|+||+||||||+++.|++.+.+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~---ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RP---HGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SS---SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hc---CCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45677888888766788887 53 66 9999999999999999999999999873
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.12 E-value=1.3e-06 Score=76.64 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|+.++|+||||||||||+++|++.+.|
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 999999999999999999999999875
No 204
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.12 E-value=6.6e-06 Score=70.50 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+.|+|+||||+|||||.+.|....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999987654
No 205
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.11 E-value=6e-07 Score=84.58 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=33.2
Q ss_pred cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 82 KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 82 ~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++|++.+ |++++|+|||||||||+++.|++.+.+
T Consensus 148 ~~l~l~~~~---g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 148 TELQLGFRK---PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp CSCCCCSSS---SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcceecCC---CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 468888888 999999999999999999999999866
No 206
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.10 E-value=6.7e-07 Score=87.57 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=33.9
Q ss_pred ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++||++.+ |++++|+|+|||||||+++.|++.+.+
T Consensus 283 ~~~Isl~i~~---GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 283 DEPLNVEGKA---PFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp BCCCCCCSCT---TEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCceeeccC---CeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 4678999998 999999999999999999999998865
No 207
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.08 E-value=1e-06 Score=89.03 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.9
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La 115 (287)
..+|+++||+|++ |++++|+||||||||||+++|.
T Consensus 335 ~~~L~~vsl~I~~---Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 335 EHNLKNVSVKIPL---GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp STTCCSEEEEEET---TSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccceeEecC---CCEEEEEeeCCCCHHHHHHHHH
Confidence 4589999999999 9999999999999999997653
No 208
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.06 E-value=1.5e-06 Score=79.58 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=21.6
Q ss_pred cceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc-cCC
Q 023118 69 GTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA-LDY 120 (287)
Q Consensus 69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~-l~~ 120 (287)
.||++.|+++.++++++|++ +|+|+||+|||||++.|++. +.+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp ----------------CEEE---------EEEEETTSSHHHHHHHHHC-----
T ss_pred CCCcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccC
Confidence 47889999999999998876 89999999999999999886 444
No 209
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.06 E-value=2.4e-06 Score=71.26 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=31.5
Q ss_pred cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 82 KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 82 ~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++.+.+ | ..+|+||||||||||+++|...+++
T Consensus 18 ~~~~~~~~~---g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSK---G-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCS---S-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCC---C-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 567788888 7 8999999999999999999999887
No 210
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.05 E-value=1.5e-06 Score=74.47 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
|+.++|+||||||||||+++|++.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 89999999999999999999999764
No 211
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.03 E-value=2e-06 Score=80.46 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=33.8
Q ss_pred ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.+.+++.+.+++ |+.++|+|+||||||||+++|++.+.+.
T Consensus 158 ~~~v~~~v~~~l-g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 158 WKFIPKEARPFF-AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp GGGSCTTTGGGT-CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hhhCCHHHHHhh-hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 455777776543 6899999999999999999999999984
No 212
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.02 E-value=1.5e-06 Score=78.53 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=36.0
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+|+++++.+.+ |+.++|+|+||||||||++.|++.+.+
T Consensus 23 ~~Ld~i~~~l~~---G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 23 TGINDKTLGARG---GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTHHHHHCSBCT---TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC---CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 479999999999 999999999999999999999998754
No 213
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.02 E-value=8.4e-07 Score=83.71 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=35.5
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.++++++|++.+ | +++|+|+||||||||+++|++.++.
T Consensus 49 ~~l~~v~l~~~~---G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 49 ATITQLELELGG---G-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp TTEEEEEEECCS---S-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cceeeEEEecCC---C-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999 9 9999999999999999999988875
No 214
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.01 E-value=1.6e-07 Score=83.12 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=39.6
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCch
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSV 138 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i 138 (287)
.|+++|+...++. ++++.+ ++++|+||||||||||+++|++.+.| ++|.+. ++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~----~~~~i~GpnGsGKSTll~~i~g~~~~---~~G~i~---~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE----LVTTLSGGNGAGKSTTMAAFVTALIP---DLTLLH---FRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH----HHHHHHSCCSHHHHHHHHHHHHHHSC---CTTTC----------
T ss_pred EEEEEeeecccCC-------EEEEcC----cEEEEECCCCCCHHHHHHHHhccccc---CCCeEE---ECCEEc
Confidence 4788888766643 345554 57899999999999999999999998 566654 355544
No 215
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.01 E-value=2.9e-06 Score=72.68 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.7
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++ |++++|+||||||||||++.|++.+.+
T Consensus 21 gi~~---G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 21 GIET---QAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp SEES---SEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCC---CcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 5777 999999999999999999999996544
No 216
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.97 E-value=3.5e-06 Score=89.11 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=41.1
Q ss_pred CccEEEcc-----eEEEc-CCeeeccccceeeccC----CCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 63 AHDVESGT-----FCDSL-DGKWLLKAKGREVASC----LDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 63 ~~~l~~~~-----l~~~~-~~~~il~~~s~~i~~~----l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.+++++++ |++.| ++..++++++|.+.+. -.|++++|+|||||||||++|.+ |++
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 34699999 99998 6778999999998640 01699999999999999999999 654
No 217
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.96 E-value=2.2e-06 Score=81.25 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=39.1
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
..+++++++.+++ |+.++|+||+|||||||++.|++.++..++.
T Consensus 156 ~~~l~~~~~~i~~---~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPK---KRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTT---CCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHHHHhcccccCC---CCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 3588999999999 9999999999999999999999987665544
No 218
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.95 E-value=1.1e-05 Score=74.79 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH-HHHHhCCCchhh--------------------hhhhhchhhhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY-VEKLMGGTSVAQ--------------------IFKESGEAYFRE 152 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~-ie~~~~G~~i~~--------------------~~~~~g~~~fr~ 152 (287)
+..|+|+||+|||||||+..||..++..+|++|.+ + +.|+++.. .........|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv---Yr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~ 79 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV---YRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQD 79 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG---BTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc---eeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHH
Confidence 56899999999999999999999999989999876 1 12333311 112334455665
Q ss_pred hHHHHHHHhhcCCCeEEecCC
Q 023118 153 YESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 153 ~e~~~l~~l~~~~~~via~gg 173 (287)
.-...++++......+|.+||
T Consensus 80 ~a~~~i~~i~~~gk~pIlVGG 100 (322)
T 3exa_A 80 LATPLITEIHERGRLPFLVGG 100 (322)
T ss_dssp HHHHHHHHHHHTTCEEEEESC
T ss_pred HHHHHHHHHHhCCCcEEEEcC
Confidence 556667776655566667776
No 219
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=3.1e-06 Score=71.71 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++|+||||||||||+++|++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999864
No 220
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.95 E-value=1.8e-06 Score=89.50 Aligned_cols=47 Identities=28% Similarity=0.245 Sum_probs=41.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHH-HHhcc
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEI-LSDAL 118 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~-La~~l 118 (287)
..++++++++. .|+|+||+|++ |++++|+|+||||||||++. |++.+
T Consensus 501 ~~L~v~~l~~~-----~L~~vsl~i~~---Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 501 GWLELNGVTRN-----NLDNLDVRFPL---GVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp CEEEEEEEEET-----TEEEEEEEEES---SSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEEeeeec-----ccccceEEEcC---CCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 46999999752 69999999999 99999999999999999996 76554
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.94 E-value=3.2e-06 Score=76.31 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++|+||||||||||+++|+|.+.+ +.|.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~---~~G~i 33 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS---RKASS 33 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC---CCCcc
Confidence 5899999999999999999999988 55654
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.91 E-value=3.8e-06 Score=70.09 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=28.2
Q ss_pred ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 85 GREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 85 s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
++.+.+ |+.++|+||+|+|||||++.|++.+.
T Consensus 32 ~~~~~~---g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 32 NFNPEE---GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SCCGGG---CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred hccccC---CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456677 99999999999999999999998774
No 223
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.91 E-value=5.6e-06 Score=71.83 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=32.5
Q ss_pred cEEEcceEEEcCCeeeccccc-eeeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118 65 DVESGTFCDSLDGKWLLKAKG-REVASCLDGQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s-~~i~~~l~g~~i~LvG~~GsGKSTl~k~La 115 (287)
++++++++..+.. |+.+- =.+++ |++++|+||||||||||++.|+
T Consensus 6 ~~~~~~i~tg~~~---lD~~l~Ggi~~---G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 6 YQPVRRVKSGIPG---FDELIEGGFPE---GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp --CCCEECCSCTT---TGGGTTTSEET---TCEEEEECCTTSSHHHHHHHHH
T ss_pred ccccceeecCCHh---HHHHhcCCCCC---CcEEEEEeCCCCCHHHHHHHHH
Confidence 3556666655542 33331 16788 9999999999999999999999
No 224
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.91 E-value=2.3e-06 Score=78.71 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|++++|+|||||||||+++.|++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 899999999999999999999999987
No 225
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.90 E-value=4.1e-06 Score=71.76 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
|++++|+|||||||||++++|++.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 67899999999999999999999874
No 226
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.90 E-value=5.4e-06 Score=85.59 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=41.2
Q ss_pred cEEEcceEEEc-----CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 65 DVESGTFCDSL-----DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 65 ~l~~~~l~~~~-----~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.+.+++..+.. ++..+++|++|+ .+ |++++|+|||||||||++|.|++.
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~---g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQ---RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SS---SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CC---CcEEEEECCCCCChHHHHHHHHHH
Confidence 46777665544 456789999999 77 999999999999999999999985
No 227
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.88 E-value=4e-06 Score=76.62 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.|+.++|+||||||||||+++|++.+.+ ++|.+.
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~---~~G~i~ 201 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKL---RVSEVS 201 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC---C-----
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccc---ccccee
Confidence 3899999999999999999999999998 577665
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.85 E-value=3.3e-06 Score=83.01 Aligned_cols=40 Identities=20% Similarity=0.066 Sum_probs=36.7
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+++++++.+.+ |+.++|+||+||||||++++|++.+.+
T Consensus 247 ~~~l~~l~~~v~~---g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 247 SGVLAYLWLAIEH---KFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp HHHHHHHHHHHHT---TCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3478889999998 999999999999999999999999977
No 229
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.83 E-value=3.9e-06 Score=87.71 Aligned_cols=50 Identities=8% Similarity=0.070 Sum_probs=41.2
Q ss_pred cEEEcceEEEc-------CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 65 DVESGTFCDSL-------DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 65 ~l~~~~l~~~~-------~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.+.+++..+.+ ++..++++++|++.+ |++++|+|||||||||++|.+++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~---g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDS---ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTS---CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCC---CeEEEEECCCCCchHHHHHHHHHH
Confidence 46666665544 246788999999999 999999999999999999999753
No 230
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.83 E-value=6e-06 Score=77.59 Aligned_cols=40 Identities=23% Similarity=0.268 Sum_probs=32.9
Q ss_pred eeeccccce-------eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 78 KWLLKAKGR-------EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 78 ~~il~~~s~-------~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
...|+++++ ...+ |..++|+||+||||||++++|++.+.+
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~---~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVP---RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCS---SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHcCChHHHHHHHhCC---CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 345666665 5566 889999999999999999999998876
No 231
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.79 E-value=7.2e-05 Score=66.59 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
..|+|.|+.||||||+++.|...+|.+.+..+..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~ 35 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGP 35 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChH
Confidence 3799999999999999999999888877776644
No 232
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.79 E-value=1.5e-05 Score=75.99 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=38.1
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
++++|+ +.|++.. .+++.+ |+.++|+||||||||||+.+|++.+++.
T Consensus 7 l~~~~~-~~~~~~~-----~~~~~~---~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 7 LELSNF-KSYRGVT-----KVGFGE---SNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EEEESC-SSCCSEE-----EEECTT---CSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEEeCE-EEECCce-----eEEecC---CCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 678888 6887543 234566 8999999999999999999999998773
No 233
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.78 E-value=9.8e-06 Score=69.17 Aligned_cols=39 Identities=18% Similarity=0.082 Sum_probs=33.2
Q ss_pred eeeccccce-eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 78 KWLLKAKGR-EVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 78 ~~il~~~s~-~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
...|+++.. .+.+ |+.++|+||||||||||++.|++.+.
T Consensus 9 ~~~Ld~~~~ggi~~---G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQ---GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CHHHHGGGTTSEET---TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred chHHHHHhcCCCcC---CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346777776 7888 99999999999999999999997653
No 234
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.77 E-value=1.1e-05 Score=82.93 Aligned_cols=48 Identities=8% Similarity=0.015 Sum_probs=40.2
Q ss_pred cEEEcceEEEc---CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 65 DVESGTFCDSL---DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 65 ~l~~~~l~~~~---~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.+.+++..+.+ ++..+++|++|+ |++++|+|||||||||++|.|++..
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~------g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA------HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES------SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEEeECceEccCCceEeeeccCC------CcEEEEECCCCCChHHHHHHHHhhh
Confidence 47777776655 556788899888 6899999999999999999999865
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.76 E-value=2.6e-06 Score=85.36 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=29.3
Q ss_pred cEEEcceEEEcCCe--eeccccc----------eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 65 DVESGTFCDSLDGK--WLLKAKG----------REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 65 ~l~~~~l~~~~~~~--~il~~~s----------~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++++|+++.|++. .+++.++ ++++ .++|+||+|||||||+++|+|.+.|. ++|.+
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp------~iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~v 77 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALP------AIAVIGDQSSGKSSVLEALSGVALPR--GSGIV 77 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCC------CEECCCCTTSCHHHHHHHHHSCC---------C
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCC------eEEEECCCCChHHHHHHHHhCCCCCC--CCCeE
Confidence 47899999999752 3444332 3343 49999999999999999999998663 45554
No 236
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.74 E-value=2.7e-05 Score=72.04 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=52.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHHHHHhCCCchh--------------------hhhhhhchhhhhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYVEKLMGGTSVA--------------------QIFKESGEAYFREY 153 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ie~~~~G~~i~--------------------~~~~~~g~~~fr~~ 153 (287)
...|+|+||+|||||||+..||..++..+|+.|.+-. +.|+++. +.........|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv--Y~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI--YKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT--BTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc--cccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 4578999999999999999999999988888886510 1233332 11123344556655
Q ss_pred HHHHHHHhhcCCCeEEecCC
Q 023118 154 ESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 154 e~~~l~~l~~~~~~via~gg 173 (287)
-...++++......++-+||
T Consensus 88 a~~~i~~i~~~g~~pilVGG 107 (316)
T 3foz_A 88 ALAEMADITAAGRIPLLVGG 107 (316)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHhCCCcEEEEcC
Confidence 55667777655555666665
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.74 E-value=2.3e-06 Score=84.54 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=44.9
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA 123 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi 123 (287)
.-++++.+.|++..++.++++++ + |..++|+||+||||||+++.|++.++++|+
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~---g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-K---GPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-C---SCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-C---CCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 33556666666666788888888 5 899999999999999999999999988763
No 238
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.73 E-value=9.3e-06 Score=85.20 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=38.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEIL 114 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~L 114 (287)
..+++++++. ..|+++||+|++ |++++|+|+||||||||++.|
T Consensus 646 ~~L~v~~l~~-----~~Lk~Vsl~I~~---GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 646 RQLTVVGARE-----HNLRGIDVSFPL---GVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SEEEEEEECS-----TTCCSEEEEEES---SSEEEEECSTTSSHHHHHTTT
T ss_pred ceEEEecCcc-----ccccCceEEECC---CCEEEEEcCCCCCHHHHHHHH
Confidence 4688998863 369999999999 999999999999999999985
No 239
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.73 E-value=6.7e-06 Score=77.52 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=31.0
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+|++++ +.+ |+.++|+||+||||||+++.|++.+.+
T Consensus 127 ~l~~l~--~~~---g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 127 KVLELC--HRK---MGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SHHHHT--TSS---SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHh--hcC---CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 555554 667 999999999999999999999998866
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.71 E-value=8.1e-06 Score=75.87 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|++++|+|||||||||+++.|++.+.+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998866
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.70 E-value=1e-05 Score=76.09 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC-CccccchhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD-YTFADSDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~-~~fid~d~~i 129 (287)
|++++|+||||+|||||+++|++.+. + ++|.+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~---~~G~I~ 248 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEI---LTNDVS 248 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCC---CCC---
T ss_pred CCEEEEECCCCccHHHHHHHHhcccccc---ccCCcc
Confidence 89999999999999999999999988 7 455543
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.68 E-value=1.9e-05 Score=72.21 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
.|+.++|+||||+|||||+++|+ .+.+ ++|.+.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~---~~G~i~ 196 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEEL---RTQEVS 196 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCC---CCSCC-
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhC---cccccc
Confidence 48999999999999999999999 8877 566655
No 243
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.67 E-value=3.7e-05 Score=73.46 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH-HHHHhCCCchh-------h-------------hhhhhchhhhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY-VEKLMGGTSVA-------Q-------------IFKESGEAYFRE 152 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~-ie~~~~G~~i~-------~-------------~~~~~g~~~fr~ 152 (287)
...|+|+||+|||||||+..|+..++..+|+.|.+ + +.|+++. + .........|.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv---Yr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~ 78 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV---YKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFET 78 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT---BSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce---ecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHH
Confidence 35789999999999999999999999889988874 1 1333331 1 112234556766
Q ss_pred hHHHHHHHhhcCCCeEEecCC
Q 023118 153 YESKALQKLSLVPQQVVATGG 173 (287)
Q Consensus 153 ~e~~~l~~l~~~~~~via~gg 173 (287)
.-...++++......+|-+||
T Consensus 79 ~a~~~i~~i~~~g~~pilVGG 99 (409)
T 3eph_A 79 ECMNAIEDIHRRGKIPIVVGG 99 (409)
T ss_dssp HHHHHHHHHHTTTCEEEEECS
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 666677777666666666766
No 244
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.65 E-value=1.9e-05 Score=82.81 Aligned_cols=47 Identities=11% Similarity=-0.060 Sum_probs=39.2
Q ss_pred cEEEcceEEEc-----CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHH
Q 023118 65 DVESGTFCDSL-----DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEIL 114 (287)
Q Consensus 65 ~l~~~~l~~~~-----~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~L 114 (287)
.+.+++..+.+ ++..++++++|.+.+ |++++|+|||||||||++|.+
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~---g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDK---QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTT---BCEEEEECCTTSSHHHHHHHH
T ss_pred ceEeecCccchhhhcCCceeecccceeecCC---CeEEEEECCCCCCHHHHHHHH
Confidence 46666666555 234688999999999 999999999999999999999
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.65 E-value=6.2e-06 Score=76.04 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=25.4
Q ss_pred eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+++.+ |++++|+||||+|||||++.|++.+.+ ++|.+.
T Consensus 168 ~~~~~---G~~~~lvG~sG~GKSTLln~L~g~~~~---~~G~I~ 205 (307)
T 1t9h_A 168 IPHFQ---DKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 205 (307)
T ss_dssp GGGGT---TSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred HhhcC---CCEEEEECCCCCCHHHHHHHhcccccc---ccccee
Confidence 44555 999999999999999999999998887 455554
No 246
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.65 E-value=1.1e-05 Score=84.32 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=38.4
Q ss_pred ccEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHH
Q 023118 64 HDVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEIL 114 (287)
Q Consensus 64 ~~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~L 114 (287)
..+++++++. ..|+++||+|++ |++++|+|+||||||||++.|
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~---Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPL---GTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEES---SSEEECCBCTTSSHHHHHTTT
T ss_pred eEEEEecCcc-----cccccceEEEcC---CCEEEEEcCCCCCHHHHHHHH
Confidence 4688888863 369999999999 999999999999999999985
No 247
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.61 E-value=1.9e-05 Score=75.22 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=45.3
Q ss_pred cEEEcceEEEcC-Ceeecc--------------ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 65 DVESGTFCDSLD-GKWLLK--------------AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 65 ~l~~~~l~~~~~-~~~il~--------------~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-+.++|+++.|. ++..++ |+.+.+.+ |+.++|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~r---GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGR---GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBT---TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecC---CcEEEEecCCCCChhHHHHHHHHHH
Confidence 478999999996 456788 89999999 9999999999999999999998865
No 248
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.61 E-value=5.1e-06 Score=70.14 Aligned_cols=35 Identities=26% Similarity=0.092 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
+.++|+|+||||||||+++|++.+.+.-+..|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~ 37 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVK 37 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEE
Confidence 57999999999999999999999876311244443
No 249
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.59 E-value=3.2e-06 Score=78.55 Aligned_cols=51 Identities=27% Similarity=0.105 Sum_probs=44.0
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+++.++..+.|+...+++++++.+.+ +..|+|+|++|+||||+++.|++.+
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l~~~~~~---~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAIMPYCGN---TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHHGGGCSC---SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcCCchhhhHHHHHHHhCCcccCC---CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35666777777777789999999988 9999999999999999999998765
No 250
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.58 E-value=2.6e-05 Score=64.00 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|+.++|+||+|+|||||++++++.+.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999987643
No 251
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.57 E-value=3.2e-05 Score=72.68 Aligned_cols=36 Identities=28% Similarity=0.193 Sum_probs=31.8
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
..++++++++.+ | +++|+|||||||||++++|+...
T Consensus 15 ~~~~~~~~~~~~---g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 15 RNLAPGTLNFPE---G-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TTCCSEEEECCS---E-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeeeEEEEcC---C-eEEEECCCCCChhHHHHHHHHhc
Confidence 357889999998 8 99999999999999999998643
No 252
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.57 E-value=9.1e-06 Score=79.67 Aligned_cols=54 Identities=22% Similarity=0.341 Sum_probs=44.3
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
.+++++...|....+++++++.+++ | +.|+||+|+|||||++.|++.++.+|+.
T Consensus 41 ~~l~~lv~~l~~~~~~~~lg~~ip~---G--vLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 41 EELKEIVEFLKNPSRFHEMGARIPK---G--VLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp HHHHHHHHHHHCGGGTTTTSCCCCS---E--EEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhhchhhhhhccCCCCc---e--EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4455665556666688999999987 6 9999999999999999999998877743
No 253
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.52 E-value=1.8e-05 Score=78.98 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=44.8
Q ss_pred EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
-+++..-||...+++++++.+.+ |+.++|+||+||||||+++.|++.+.+.
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~---g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQ---KRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHT---TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccC---CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 34455567878899999999999 9999999999999999999999999775
No 254
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.52 E-value=4.4e-05 Score=70.12 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=34.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|+++|+ +.|++ ++++++.+ | ..+|+|+||||||||+.+|...++.
T Consensus 6 L~i~nf-r~~~~-----~~~l~~~~---g-~~~i~G~NGsGKS~ll~ai~~llg~ 50 (322)
T 1e69_A 6 LYLKGF-KSFGR-----PSLIGFSD---R-VTAIVGPNGSGKSNIIDAIKWVFGE 50 (322)
T ss_dssp EEEESB-TTBCS-----CEEEECCS---S-EEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred EEEeCc-eeecC-----CeEEecCC---C-cEEEECCCCCcHHHHHHHHHHHhCC
Confidence 566663 45532 45667777 7 9999999999999999999987754
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.52 E-value=3.2e-05 Score=68.01 Aligned_cols=30 Identities=23% Similarity=0.446 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
..+.|+||+|+||||+++.|++.++.+|+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~~~ 75 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFT 75 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCEEE
Confidence 359999999999999999999999877643
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.51 E-value=2.1e-05 Score=71.73 Aligned_cols=48 Identities=27% Similarity=0.294 Sum_probs=39.8
Q ss_pred EEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 66 VESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+..+++++.|+... ++++++ + |++++|+|++|+||||++..||+.+.+
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~---~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--D---RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--S---SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC--ceeecC--C---CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45677888887543 678887 6 899999999999999999999998754
No 257
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.49 E-value=4.6e-05 Score=70.41 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=32.6
Q ss_pred ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++++|.+.+ +++|+|+|++|+||||++..||+.+.+
T Consensus 95 ~~~l~~~~~~---~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 95 KYRIDFKENR---LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp -CCCCCCTTS---CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred ccCccccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678888888 999999999999999999999988754
No 258
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.45 E-value=8.4e-05 Score=67.42 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=35.2
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc--cchhHHHHHh
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA--DSDKYVEKLM 133 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi--d~d~~ie~~~ 133 (287)
.+.+ +..+.|.||+||||||+++.|++.++.+|+ ++..+.....
T Consensus 45 ~~~~---~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~ 90 (301)
T 3cf0_A 45 GMTP---SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 90 (301)
T ss_dssp CCCC---CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHH
T ss_pred CCCC---CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhc
Confidence 3556 789999999999999999999999998885 4445554433
No 259
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.40 E-value=9.2e-05 Score=63.81 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=25.3
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-+++ |+.++|+||+|||||||++.|++.
T Consensus 20 gi~~---G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIET---GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEET---TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcC---CeEEEEECCCCCcHHHHHHHHHHH
Confidence 3667 999999999999999999999983
No 260
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.39 E-value=7.2e-05 Score=63.47 Aligned_cols=34 Identities=26% Similarity=0.127 Sum_probs=28.4
Q ss_pred eccccce-eeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 80 LLKAKGR-EVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 80 il~~~s~-~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.|+++.. .+++ |+.++|+||+||||||+++.|++
T Consensus 8 ~LD~~l~Ggi~~---G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 8 SLDSLLGGGFAP---GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHHTTSSBCT---TSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCcC---CEEEEEECCCCCCHHHHHHHHHH
Confidence 3444443 5777 99999999999999999999987
No 261
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.37 E-value=6.8e-05 Score=70.32 Aligned_cols=34 Identities=35% Similarity=0.327 Sum_probs=28.4
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.++++++++.+ | ..+|+||||||||||+.+|+..
T Consensus 13 ~~~~~~i~~~~---g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 13 GLKNVDIEFQS---G-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp TEEEEEEECCS---E-EEEEECCTTSSHHHHHHHHHHH
T ss_pred CccceEEecCC---C-eEEEECCCCCCHHHHHHHHHHH
Confidence 34567788887 7 7889999999999999999854
No 262
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.37 E-value=2e-05 Score=72.53 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=40.3
Q ss_pred cceEEEcCCeeeccccceeeccCCCCcE--EEEEcCCCCCHHHHHHHHHhccCC
Q 023118 69 GTFCDSLDGKWLLKAKGREVASCLDGQC--LFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 69 ~~l~~~~~~~~il~~~s~~i~~~l~g~~--i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+++...+|...+++.++..+.. |+. +.|.||+|+||||+++.+++.+.+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~---g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE---GKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT---TCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CcHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3444556667788888888888 876 999999999999999999998744
No 263
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.36 E-value=5.1e-05 Score=72.69 Aligned_cols=35 Identities=20% Similarity=0.124 Sum_probs=32.2
Q ss_pred ccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 81 LKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 81 l~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-++++|+++. +..++|+|++|||||||++.|++..
T Consensus 147 ~~~i~lelk~---g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELML---IADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECC---SCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcC---CCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3688999999 9999999999999999999999873
No 264
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.33 E-value=8.9e-05 Score=77.51 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=29.0
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~ 111 (287)
...|+++||++++ |+.++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~---Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPL---GVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEES---SSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcC---CcEEEEEccCCCChhhhH
Confidence 3479999999999 999999999999999997
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.33 E-value=9.8e-05 Score=67.86 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.6
Q ss_pred ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++...+ +++|+|+|++||||||++..||+.+.+
T Consensus 96 ~~~~~~~~---~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 96 KLNVPPEP---PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CCCCCSSS---CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcccCCC---CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 34555666 899999999999999999999998754
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.31 E-value=0.0001 Score=67.11 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+.+|+|+|++|||||||++.|++.+++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 789999999999999999999998864
No 267
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.22 E-value=0.00018 Score=64.31 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=25.2
Q ss_pred eccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 88 VASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+.+ |+.++|+||+|||||||++.+++.+
T Consensus 27 l~~---G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVA---GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EET---TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccC---CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567 9999999999999999999998744
No 268
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.22 E-value=0.00014 Score=67.84 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=31.5
Q ss_pred ecccc-ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 80 LLKAK-GREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 80 il~~~-s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+.+ +..+++ |+++.|+||+|||||||++.|++..
T Consensus 119 ~LD~lL~ggi~~---G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 119 SLDKLLGGGIET---QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHTSSEES---SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCC---CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444 578888 9999999999999999999999987
No 269
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.22 E-value=0.00014 Score=75.05 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=31.9
Q ss_pred eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
+.+.+ ++.+.|+||+|||||||++.|++.++..|+.
T Consensus 233 l~i~~---~~~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 233 IGVKP---PRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp SCCCC---CCEEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred cCCCC---CCeEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 35667 8999999999999999999999999988754
No 270
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.20 E-value=0.00014 Score=66.82 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+.++|+|++||||||+++.|++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999875
No 271
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.14 E-value=0.00026 Score=59.25 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.++|+|++|||||||++.+++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999987654
No 272
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.14 E-value=0.00016 Score=70.48 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=35.9
Q ss_pred cCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 75 LDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 75 ~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
+.....++++++.+++ | +.|+||+|+||||+++.|++.++.+|+.
T Consensus 35 l~~~~~~~~~g~~~p~---g--vLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 35 LKDPSKFNRIGARMPK---G--ILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp HHCTHHHHTTTCCCCS---E--EEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred hhChHHHhhcCCCCCC---e--EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 3333456677777765 4 8999999999999999999999988854
No 273
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.13 E-value=0.0003 Score=67.94 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccch--hHHHHHhCCCchhhhh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSD--KYVEKLMGGTSVAQIF 142 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d--~~ie~~~~G~~i~~~~ 142 (287)
...|.|+||+|+||||+++.||+.++++|+..+ .+.+.-+-|.++..++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~l 100 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSII 100 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHH
Confidence 356999999999999999999999999997655 3433222365554443
No 274
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.10 E-value=0.00027 Score=63.14 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA 123 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi 123 (287)
+..+.|.||+|+||||+++.+++.++.+|+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 678999999999999999999999988774
No 275
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.10 E-value=0.00027 Score=57.77 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
...+|+|||||||||++..|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999987544
No 276
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.09 E-value=0.00029 Score=62.55 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
+..+.|.||+|+||||+++.++..++.+|+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 6789999999999999999999999988754
No 277
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.04 E-value=0.00032 Score=58.81 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.++|+|++|+|||||++.|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 278
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.03 E-value=0.00035 Score=60.89 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
...+.|.||+|+||||+++.++..++.+|+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 5679999999999999999999999887753
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.03 E-value=0.00029 Score=64.22 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
|++++|+|++|+||||++..||+.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999998764
No 280
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.02 E-value=0.00041 Score=60.29 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=34.0
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
.++..-+.+. |..|+|+||+|+|||||+..|+.... .++..|.+
T Consensus 24 ~lHa~~v~~~----g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 24 SMHGVLVDIY----GLGVLITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp CEESEEEEET----TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred eeeEEEEEEC----CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 3444444443 78899999999999999999998866 77777754
No 281
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.97 E-value=0.00029 Score=68.95 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=37.4
Q ss_pred EEEcceEEEcCCeeeccc-cceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 66 VESGTFCDSLDGKWLLKA-KGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 66 l~~~~l~~~~~~~~il~~-~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
++.++++..|++ |+. ++..+.+ |++++|+|+||||||||++.+++.+.+
T Consensus 258 ~~~~~l~~g~~~---ld~vL~g~i~~---G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 258 SSNVRVSSGVVR---LDEMCGGGFFK---DSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp CCCCEECCSCHH---HHHHTTSSEES---SCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cccceeecChHH---HHHHhCCCCCC---CcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 456666655532 222 2448888 999999999999999999999988755
No 282
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.97 E-value=0.00018 Score=69.06 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=37.5
Q ss_pred EcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 68 SGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 68 ~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+++++.|+... +++++. + +.+|+++|++||||||++..||+.+..
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~---~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--D---RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--S---SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCc--ccccCC--C---CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456777787543 677777 6 899999999999999999999988754
No 283
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.96 E-value=0.00035 Score=64.76 Aligned_cols=33 Identities=39% Similarity=0.602 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSD 126 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d 126 (287)
+..+.|.||+|+|||++++.|+..++.+|+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 568999999999999999999999999987654
No 284
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.93 E-value=0.00049 Score=56.59 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
|..|+|+|++|+|||||++.|++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999999754
No 285
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.93 E-value=0.00021 Score=66.35 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=31.2
Q ss_pred EcceEEEcCC---eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 68 SGTFCDSLDG---KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 68 ~~~l~~~~~~---~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
++++.+.|+. ..+|++++++++ .|+|+|++|||||||++.|.|.
T Consensus 11 l~~~~~~~~~~~~~~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 11 IQRACTALGDHGDSSALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp TTTTTTSCSSCCSSCCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhCccccccccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 4455555542 357888888887 4999999999999999999984
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.91 E-value=0.00049 Score=62.22 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
..+.|.||+|+|||++++.||..++.+|+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 467788999999999999999999988854
No 287
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.88 E-value=0.00056 Score=57.07 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=20.7
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.+++++++..++ -.|+|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~----~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKH----GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ----------------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCc----cEEEEECCCCCCHHHHHHHHhcC
Confidence 367888888765 47999999999999999999863
No 288
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.85 E-value=0.00023 Score=62.70 Aligned_cols=29 Identities=28% Similarity=0.451 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
.+.|.||+|+||||+++.|+..++.+|+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999998887754
No 289
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0006 Score=65.51 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS 125 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~ 125 (287)
.+-+.|.||+|||||++++.+|+.++.+|+..
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 45699999999999999999999999998543
No 290
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0006 Score=65.68 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
..-|.|.||+|||||++++.||+.++.+|+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 5679999999999999999999999999854
No 291
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.00061 Score=65.60 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
..-|.|.||+|||||++++.+|+.++.+|+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 4679999999999999999999999999854
No 292
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.79 E-value=0.00077 Score=57.93 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=25.9
Q ss_pred cccc-ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 81 LKAK-GREVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 81 l~~~-s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
|+.+ .--+.+ |+.++|+|++|+||||++..++.
T Consensus 12 LD~~l~gGl~~---G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 12 VDEILHGGIPE---RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp HHHHTTTSEET---TCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHcCCCCCC---CcEEEEECCCCCCHHHHHHHHHH
Confidence 4444 445777 99999999999999999766554
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.77 E-value=0.00064 Score=63.20 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSD 126 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d 126 (287)
...+.|.||+|+||||+++.|+..++.+|+..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 457999999999999999999999998886543
No 294
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.75 E-value=0.00079 Score=54.67 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
..|+|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998753
No 295
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.74 E-value=0.00075 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+..+.|.||+|+||||+++.++..+.
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999998764
No 296
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.00065 Score=64.83 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
..-+.|.||+|||||++++.+|+.++.+|+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 4568999999999999999999999999954
No 297
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.73 E-value=0.001 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..+.|.|++|+|||++++.|+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 6789999999999999999999875
No 298
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.72 E-value=0.00073 Score=56.95 Aligned_cols=26 Identities=35% Similarity=0.255 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
-..++|+|++|||||||++.|.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 35799999999999999999988653
No 299
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.72 E-value=0.00075 Score=64.10 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
|..++|+|+||+|||||+++|++.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999999983
No 300
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.71 E-value=0.00084 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..+.|.||+|+||||+++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999876
No 301
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.69 E-value=0.00087 Score=59.29 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
...+.|.||+|+||||+++.++..++.+|+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4679999999999999999999999888754
No 302
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.68 E-value=0.00084 Score=59.72 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA 123 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi 123 (287)
+..+.|.||+|+||||+++.++..++.+|+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999999987764
No 303
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.67 E-value=0.00046 Score=58.06 Aligned_cols=39 Identities=28% Similarity=0.360 Sum_probs=29.7
Q ss_pred EcCC-eeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 74 SLDG-KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 74 ~~~~-~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.|++ ..+++++++..++ -.|+|+|++|+|||||++.+.+
T Consensus 8 ~~~~~~~~l~~~~~~~~~----~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKT----GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -----CHHHHHHTCTTCC----EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhccCCC----cEEEEECCCCCCHHHHHHHHhc
Confidence 4443 3578888888776 4689999999999999999865
No 304
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.66 E-value=0.00098 Score=63.43 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.8
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La 115 (287)
-+.+ |+++.|+||+|||||||++.|+
T Consensus 174 GI~~---Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVET---GSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEET---TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCC---CcEEEEEcCCCCChHHHHHHHH
Confidence 4666 9999999999999999999654
No 305
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.66 E-value=0.00093 Score=60.94 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
...+.|.||+|+|||++++.++..++.+|+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 4679999999999999999999999988854
No 306
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.66 E-value=0.00073 Score=55.00 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..+.|.||+|+||||+++.++..+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999999876
No 307
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.65 E-value=0.0011 Score=56.74 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
...+|+|||||||||++.+|.-.++
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5889999999999999999875543
No 308
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.65 E-value=0.00081 Score=69.72 Aligned_cols=29 Identities=28% Similarity=0.437 Sum_probs=27.9
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~ 111 (287)
=|||++++|+. ++.++|.|+||||||||+
T Consensus 25 NLkni~v~iP~---~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 25 NLKDISVKVPR---DALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp TCCSEEEEEES---SSEEEEESSTTSSHHHHH
T ss_pred CCCCeeEEecC---CCEEEEECCCCCCHHHHH
Confidence 59999999999 999999999999999997
No 309
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.65 E-value=0.00036 Score=68.16 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=33.1
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCc
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYT 121 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~ 121 (287)
.++++++++.+ | ..+|+|+||||||||+.+|...++-.
T Consensus 50 ~~~~~~l~f~~---g-~n~i~G~NGaGKS~lleAl~~llg~r 87 (517)
T 4ad8_A 50 TITQLELELGG---G-FCAFTGETGAGKSIIVDALGLLLGGR 87 (517)
T ss_dssp TBSCEEEECCC---S-EEEEEESHHHHHHHHTHHHHHHTCSC
T ss_pred ceeeEEEecCC---C-eEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 56778888888 7 99999999999999999998887654
No 310
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.64 E-value=0.00025 Score=63.50 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+.|+||+|+||||+++.|++.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 57999999999999999999998743
No 311
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.64 E-value=0.00091 Score=55.28 Aligned_cols=23 Identities=43% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 312
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.64 E-value=0.0009 Score=62.26 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..|+|+|++|+|||||++.|++.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999864
No 313
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.63 E-value=0.0011 Score=60.86 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc-CCccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL-DYTFA 123 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l-~~~fi 123 (287)
...+.|.||+|+|||++++.+|..+ +.+|+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 5789999999999999999999988 66664
No 314
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.63 E-value=0.00038 Score=63.55 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=34.8
Q ss_pred EcceEEEcCCeeeccc-cceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 68 SGTFCDSLDGKWLLKA-KGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 68 ~~~l~~~~~~~~il~~-~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.+++.+.|+... ++ +++.. + +.+++++|++|+||||++..||+.+
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~-~---~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDK-I---PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSS-S---SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred HHHHHHHhcccc--ccccccCC-C---CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456666776543 45 66664 3 7899999999999999999999776
No 315
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.63 E-value=0.00081 Score=61.39 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHh-ccCC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSD-ALDY 120 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~-~l~~ 120 (287)
..+.|.||+|+||||+++.|++ .+++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3499999999999999999999 4555
No 316
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.61 E-value=0.00092 Score=60.66 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc---CCcc--ccchhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL---DYTF--ADSDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l---~~~f--id~d~~i 129 (287)
+..+.|.||+|+||||+++.++..+ +.+| +++..+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 5689999999999999999999877 4444 5555543
No 317
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.60 E-value=0.0012 Score=54.19 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.|++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 318
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.55 E-value=0.00098 Score=69.68 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=28.2
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~ 111 (287)
.=|||++++|+. ++.++|.|+||||||||+
T Consensus 12 hNLkni~~~ip~---~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 12 HNLKNITVRIPK---NRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp TTCCSBCCEEET---TSEEEEEESTTSSSHHHH
T ss_pred cccCcceeccCC---CcEEEEECCCCCcHHHHH
Confidence 358999999999 999999999999999997
No 319
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.54 E-value=0.0003 Score=64.02 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=32.1
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFA 123 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fi 123 (287)
+++.+...+.. |..+.|.||+|+|||++++.++..++.+|+
T Consensus 35 ~~~~l~~~l~~---~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 35 MINRLLIGICT---GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp HHHHHHHHHHH---TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHc---CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 33444444445 778999999999999999999999887764
No 320
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.001 Score=64.56 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
-.-|.|.||+|||||++++.||+.++.+|+.
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 5679999999999999999999999999854
No 321
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=60.75 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
...+.|.||+|+||||+++.|+..++.+|+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 5689999999999999999999999988753
No 322
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.52 E-value=0.0011 Score=69.73 Aligned_cols=31 Identities=19% Similarity=0.444 Sum_probs=28.5
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~ 111 (287)
..=|||++++|+. ++.++|.|+||||||||+
T Consensus 33 ~hNLkni~v~iP~---~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 33 EHNLRSVDLDLPR---DALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSSCCSEEEEEES---SSEEEEEESTTSSHHHHH
T ss_pred ccccCceeeeccC---CCEEEEECCCCCcHHHHH
Confidence 3459999999999 999999999999999986
No 323
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.52 E-value=0.00059 Score=70.37 Aligned_cols=37 Identities=16% Similarity=0.315 Sum_probs=31.8
Q ss_pred ceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 85 GREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 85 s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
++.+.+ +..+.|+||+|||||||++.||+.++.+|+.
T Consensus 505 ~~~~~~---~~~vLL~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 505 KFGMTP---SKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCCCC---CCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred hcCCCC---CceeEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 345566 8899999999999999999999999888754
No 324
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0011 Score=60.37 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..++|.||+|+||||+++.+++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999877
No 325
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.52 E-value=0.0011 Score=69.48 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=28.6
Q ss_pred eeeccccceeeccCCCCcEEEEEcCCCCCHHHHH
Q 023118 78 KWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVG 111 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~ 111 (287)
..=|||++++|+. ++.++|.|+||||||||+
T Consensus 31 ~hNLkni~v~iP~---~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 31 AHNLKNIDVEIPR---GKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSSCCSEEEEEET---TSEEEEEESTTSSHHHHH
T ss_pred cccCCceeeeccC---CcEEEEECCCCCCHHHHH
Confidence 3459999999999 999999999999999986
No 326
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.51 E-value=0.0014 Score=60.47 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
...+|+|||||||||++..|.-.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~ 46 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999987543
No 327
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.51 E-value=0.0012 Score=61.44 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
...+.|.||+|+|||++++.++..++.+|+.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4569999999999999999999999988854
No 328
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0013 Score=63.17 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
..-|.|.||+|||||++++.||+.++.+|+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 4579999999999999999999999999854
No 329
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.49 E-value=0.0063 Score=52.66 Aligned_cols=108 Identities=18% Similarity=0.168 Sum_probs=58.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC---CccccchhHHHH-H--hCCCchhhhhhh-hchhhhhhhHHHH---------
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD---YTFADSDKYVEK-L--MGGTSVAQIFKE-SGEAYFREYESKA--------- 157 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~---~~fid~d~~ie~-~--~~G~~i~~~~~~-~g~~~fr~~e~~~--------- 157 (287)
-.+|+|+|++||||+|+++.+...++ .+.+.-++.+.+ . ..|.++.+++.. .-.+.+|..-..+
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~ 90 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADP 90 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCc
Confidence 46899999999999999999988664 444566655542 1 135554443210 0001122221111
Q ss_pred ---HHHhhc--CCCeEEecCCceEeccccHHhhcC--C---cEEEEecCHHHHHHHH
Q 023118 158 ---LQKLSL--VPQQVVATGGGAVVRPLNWRFMRQ--G---ITVFLNVPLDALARRI 204 (287)
Q Consensus 158 ---l~~l~~--~~~~via~ggG~v~~~~~~~~L~~--g---~~I~L~~~~e~l~~Ri 204 (287)
++.... ....++.+| +-++...+++++ | ++|.+.++++++.+|.
T Consensus 91 ~~~~~~~~~~~~~~~vII~d---vR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 91 GFFCRKIVEGISQPIWLVSD---TRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp TTTHHHHSBTCCCSEEEECC---CCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred hHHHHHHHHhcCCCcEEEeC---CCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 111111 112344444 223334455553 2 3589999999999994
No 330
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.48 E-value=0.00049 Score=57.90 Aligned_cols=26 Identities=27% Similarity=0.603 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
..+.|.||+|+||||+++.++..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 37999999999999999999987754
No 331
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.48 E-value=0.0014 Score=55.03 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
..+.|.||+|+||||+++.|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999866
No 332
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0013 Score=55.29 Aligned_cols=25 Identities=36% Similarity=0.259 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
..++|+|++||||||++..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999988764
No 333
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.47 E-value=0.0012 Score=60.01 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
+..|+|+|++|+|||||++.|.+.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999999875
No 334
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.43 E-value=0.0017 Score=59.06 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDYTFADS 125 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~~fid~ 125 (287)
..+.|.||+|+||||+++.++..++.+|+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 5799999999999999999999999887543
No 335
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.42 E-value=0.00034 Score=65.41 Aligned_cols=44 Identities=25% Similarity=0.175 Sum_probs=33.3
Q ss_pred cEEEcceEEEcCCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 65 DVESGTFCDSLDGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 65 ~l~~~~l~~~~~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.+.+.+++..|+.+.+++++++. |+|+|++|+|||||++.|.+.
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~---------I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFT---------LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEEC---------EEECCCTTSCHHHHHHHHTTC
T ss_pred eEEeccchHHhCCeeecCCCCEE---------EEEEcCCCCCHHHHHHHHhCC
Confidence 57888888888877777766553 589999999999999998765
No 336
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.41 E-value=0.0016 Score=58.27 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..+.|.||+|+||||+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999887
No 337
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.29 E-value=0.0024 Score=59.80 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
+..+.|.||+|+|||++++.|+..++.+|+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 5789999999999999999999999988854
No 338
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.00094 Score=60.63 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=28.6
Q ss_pred eeeccccceeeccCCCC--cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 78 KWLLKAKGREVASCLDG--QCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 78 ~~il~~~s~~i~~~l~g--~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
..+++.+...+.. | ..+.|.||+|+||||+++.+++.+.
T Consensus 43 ~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 43 DHAVTVLKKTLKS---ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CTTHHHHHHHTTC---TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444444444 4 4599999999999999999998864
No 339
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.27 E-value=0.0022 Score=58.74 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
.++|.||+|+||||+++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998873
No 340
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.24 E-value=0.0022 Score=61.68 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFADS 125 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid~ 125 (287)
.+.|.||+|+||||+++.|+..++.+|+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 599999999999999999999999887553
No 341
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.23 E-value=0.0025 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
-.|+|+|++|+|||||++.|.+...+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 46999999999999999999876543
No 342
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.22 E-value=0.0014 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+..+.|.|++|+|||++++.|+....
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC
Confidence 67899999999999999999988766
No 343
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.21 E-value=0.0025 Score=61.15 Aligned_cols=31 Identities=29% Similarity=0.567 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC--Ccccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD--YTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid 124 (287)
+..+.|.||+|+|||++++.+|..++ .+|+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~ 95 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCP 95 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEE
Confidence 57899999999999999999999998 66643
No 344
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.20 E-value=0.0029 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 345
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.19 E-value=0.0038 Score=53.04 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccchhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~i 129 (287)
|.-+.|.|+||+||||++..|.. .|+.++.-|.+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~ 50 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID-RGHQLVCDDVID 50 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEE
Confidence 88999999999999999998877 477766666543
No 346
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.16 E-value=0.0017 Score=59.28 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..+.|.||+|+||||+++.++..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999877
No 347
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.16 E-value=0.0031 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998653
No 348
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.14 E-value=0.0031 Score=59.12 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=25.1
Q ss_pred eccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 88 VASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 88 i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+++ |+.+.|.||+|||||||+..++...
T Consensus 58 i~~---G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPR---GRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EET---TEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccC---CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 566 9999999999999999999998764
No 349
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.12 E-value=0.0031 Score=60.41 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc-CCccc--cchhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL-DYTFA--DSDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l-~~~fi--d~d~~i 129 (287)
...+.|.||+|+|||++++.++..+ +.+|+ ++..++
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 5689999999999999999999988 77763 444443
No 350
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.0032 Score=51.89 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998754
No 351
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.12 E-value=0.0028 Score=58.10 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+..+.|.||+|+||||+++.++..++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 578999999999999999999998874
No 352
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.11 E-value=0.0033 Score=49.76 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999988754
No 353
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.11 E-value=0.0034 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 354
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.09 E-value=0.0035 Score=49.70 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 355
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.08 E-value=0.0035 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998863
No 356
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.08 E-value=0.0045 Score=57.07 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=36.2
Q ss_pred CeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccchhH
Q 023118 77 GKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSDKY 128 (287)
Q Consensus 77 ~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d~~ 128 (287)
....++...+.+ . |.-++|+|+||+||||++..|.+. |..++.-|.+
T Consensus 131 ~~~~~H~~~v~~-~---g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~ 177 (314)
T 1ko7_A 131 RTTSLHGVLVDV-Y---GVGVLITGDSGIGKSETALELIKR-GHRLVADDNV 177 (314)
T ss_dssp EEEEEESEEEEE-T---TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred cceeeeEEEEEE-C---CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeE
Confidence 345667766666 3 889999999999999999999875 7777655544
No 357
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.07 E-value=0.0034 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999998764
No 358
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.06 E-value=0.0036 Score=64.63 Aligned_cols=32 Identities=22% Similarity=0.294 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFADS 125 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~ 125 (287)
-.-|.|.||+|||||+|++.+|+.++.+|+..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 46799999999999999999999999998543
No 359
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.05 E-value=0.0029 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6899999999999999988653
No 360
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.05 E-value=0.0023 Score=57.48 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFA 123 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fi 123 (287)
...+.|.||+|+||||+++.++..++.+|+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999998887763
No 361
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.04 E-value=0.0037 Score=50.02 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997643
No 362
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.04 E-value=0.0036 Score=61.02 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
...+.|.||+|+||||+++.++..+++.|+.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 3689999999999999999999999888754
No 363
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0031 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
..+.|.||+|+||||+++.++..+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 359999999999999999999865
No 364
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.03 E-value=0.0039 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999887643
No 365
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.01 E-value=0.004 Score=49.68 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998754
No 366
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.01 E-value=0.004 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998764
No 367
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.00 E-value=0.004 Score=49.76 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
No 368
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.99 E-value=0.0038 Score=52.66 Aligned_cols=23 Identities=35% Similarity=0.296 Sum_probs=19.4
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Q 023118 93 DGQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 93 ~g~~i~LvG~~GsGKSTl~k~La 115 (287)
.|..+++.||+|+||||++-.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999984444
No 369
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.99 E-value=0.0041 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999988764
No 370
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.99 E-value=0.0012 Score=59.41 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=34.3
Q ss_pred CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCCccccch
Q 023118 76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALDYTFADSD 126 (287)
Q Consensus 76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~~fid~d 126 (287)
|....++.+.-.+.. |..++|.||.|+|||||++.++...++-|++..
T Consensus 16 gR~~el~~L~~~l~~---~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 16 DREEESRKLEESLEN---YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp SCHHHHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred ChHHHHHHHHHHHhc---CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 433334433333444 679999999999999999999988776666654
No 371
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.98 E-value=0.0031 Score=60.41 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..++|.||+|+|||||++.|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999876
No 372
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.97 E-value=0.0043 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999764
No 373
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.96 E-value=0.0042 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998764
No 374
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.96 E-value=0.0043 Score=54.97 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|||||||++.|.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998763
No 375
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.93 E-value=0.0041 Score=57.02 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+..+.|.||+|+||||+++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999876
No 376
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.92 E-value=0.0045 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999998875
No 377
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.90 E-value=0.0052 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.062 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.|+|+|++|+|||||++.|.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6999999999999999999876543
No 378
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.90 E-value=0.0055 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999998763
No 379
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.88 E-value=0.0046 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 380
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.88 E-value=0.005 Score=48.98 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998763
No 381
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.87 E-value=0.0047 Score=50.52 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 479999999999999999998754
No 382
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.87 E-value=0.0039 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998753
No 383
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.85 E-value=0.005 Score=50.12 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.|.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 384
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.84 E-value=0.0051 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 385
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.84 E-value=0.0049 Score=60.04 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
...+.|.||+|+|||++++.|+..++.+|+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 268 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 5679999999999999999999999988854
No 386
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.83 E-value=0.0052 Score=57.20 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.1
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-+++ |+.+.|.|++|||||||+..++..
T Consensus 57 Gl~~---G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 57 GLPR---GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEET---TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567 999999999999999998888753
No 387
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.83 E-value=0.0049 Score=50.29 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998875
No 388
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.82 E-value=0.0055 Score=49.42 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998764
No 389
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.81 E-value=0.0053 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.|.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 390
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.80 E-value=0.0056 Score=48.67 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 391
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.79 E-value=0.0049 Score=58.80 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.++|+|++|+|||||++.|.+..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999875
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.79 E-value=0.0056 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999653
No 393
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.78 E-value=0.0056 Score=49.22 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998753
No 394
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.76 E-value=0.0057 Score=50.40 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998874
No 395
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.75 E-value=0.006 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998654
No 396
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.74 E-value=0.006 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.|.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 469999999999999999998643
No 397
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.74 E-value=0.0019 Score=63.12 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCeeeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 76 DGKWLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 76 ~~~~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
|...+++.+-..+.. |..+.|.||+|+|||++++.|+..++
T Consensus 26 Gq~~~i~~l~~al~~---~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 26 ERSHAIRLCLLAALS---GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp SCHHHHHHHHHHHHH---TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHHhc---CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 333444444445555 88999999999999999999998774
No 398
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.74 E-value=0.0047 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 399
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.73 E-value=0.0046 Score=62.35 Aligned_cols=32 Identities=38% Similarity=0.290 Sum_probs=26.4
Q ss_pred eeeccCCCCcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 86 REVASCLDGQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 86 ~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
+.+.+ +.+|+|+|++|+|||||++.|.+..++
T Consensus 4 ~~~~~---~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 4 EGGAM---IRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp --CCC---EEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CccCC---CcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 45566 899999999999999999999976654
No 400
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.72 E-value=0.0057 Score=57.01 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=24.5
Q ss_pred cccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 82 KAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 82 ~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
++..+++.+ ...+|+|+||+||||++..|.=
T Consensus 17 ~~~~i~f~~----gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK----GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS----EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC----CeEEEECCCCCCHHHHHHHHHH
Confidence 344555554 5789999999999999999874
No 401
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.0063 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999987643
No 402
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.71 E-value=0.0062 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|.+|+|||||++.|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999865
No 403
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.71 E-value=0.006 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998765
No 404
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.70 E-value=0.0043 Score=59.47 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=31.2
Q ss_pred eeccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 79 WLLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 79 ~il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
..|+++..-+.+ |+.+.|.|++|+||||++..++...
T Consensus 191 ~~LD~~~gGl~~---G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 191 TELDRMTSGFQR---SDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHHSSBCT---TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCC---CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356777667888 9999999999999999999888754
No 405
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.68 E-value=0.0067 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+..+.|.|++|+|||++++.|+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 56899999999999999999998875
No 406
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.67 E-value=0.0065 Score=49.46 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999987643
No 407
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.66 E-value=0.006 Score=58.81 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
...+.|+||+|+||||+++.|+..+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999886
No 408
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.65 E-value=0.0067 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36899999999999999998764
No 409
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.64 E-value=0.0064 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
-.|+|+|.+|+|||||++.|.+.-.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4799999999999999999987543
No 410
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.63 E-value=0.0068 Score=49.74 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998864
No 411
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.61 E-value=0.0046 Score=59.40 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+.+|+++|++|+||||++..||..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999665
No 412
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.59 E-value=0.0071 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999766543
No 413
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.59 E-value=0.0065 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999985
No 414
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.58 E-value=0.0069 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-..|+|+|++|+|||||+..|++.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 415
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.57 E-value=0.0074 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.+.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999987643
No 416
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.57 E-value=0.0064 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.++|+|++|+|||||++.|++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 39999999999999999999864
No 417
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.57 E-value=0.0076 Score=49.02 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.56 E-value=0.0077 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.069 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999988753
No 419
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.55 E-value=0.0075 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999987653
No 420
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.55 E-value=0.0044 Score=50.33 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.-.|+|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 56899999999999999988763
No 421
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.55 E-value=0.0077 Score=49.45 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999988643
No 422
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.54 E-value=0.0068 Score=55.23 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+..+.|.||+|+|||+|++.|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987554
No 423
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0077 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 369999999999999999987643
No 424
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0079 Score=49.51 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 347999999999999999999763
No 425
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.51 E-value=0.0081 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998764
No 426
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.47 E-value=0.0085 Score=48.62 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHh
Q 023118 95 QCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~ 116 (287)
-.|+|+|++|+|||||++.+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3699999999999999999874
No 427
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.46 E-value=0.0077 Score=49.19 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 5679999999999999999997644
No 428
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.45 E-value=0.008 Score=52.55 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.|.+.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998754
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0086 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999988643
No 430
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.44 E-value=0.0087 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998764
No 431
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.44 E-value=0.0067 Score=56.68 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+.+++|+|++||||||+++.|+..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 432
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.44 E-value=0.0086 Score=49.92 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3479999999999999999998643
No 433
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.43 E-value=0.0091 Score=48.28 Aligned_cols=24 Identities=21% Similarity=-0.042 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999998764
No 434
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.42 E-value=0.009 Score=55.19 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.6
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-+++ |+.+.|.|++||||||++..++..
T Consensus 118 Gl~~---G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIES---MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCS---SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCC---CeEEEEECCCCCCHHHHHHHHHHH
Confidence 3556 999999999999999999998874
No 435
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.41 E-value=0.0071 Score=57.48 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
+..++|+|++|+|||||++.|.+.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 788999999999999999999875
No 436
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.40 E-value=0.0092 Score=49.05 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998754
No 437
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.40 E-value=0.0093 Score=51.57 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La 115 (287)
|+.++++||+||||||++..+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 8999999999999999877653
No 438
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0096 Score=48.71 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.|.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 439
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.36 E-value=0.0094 Score=49.68 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 440
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.36 E-value=0.0097 Score=49.07 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998764
No 441
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.35 E-value=0.0064 Score=50.85 Aligned_cols=24 Identities=29% Similarity=0.399 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.+.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 368999999999999999987543
No 442
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.35 E-value=0.0099 Score=48.98 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 443
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.34 E-value=0.0098 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998864
No 444
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.34 E-value=0.0099 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.-.|+|+|++|+|||||++.+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999885
No 445
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.33 E-value=0.007 Score=52.75 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
...+.|.||+|+||||++..|+..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998764
No 446
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.33 E-value=0.01 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|.+|+|||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998864
No 447
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.33 E-value=0.01 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999764
No 448
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.32 E-value=0.0094 Score=52.78 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|.+|||||||++.|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999886
No 449
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.31 E-value=0.01 Score=48.95 Aligned_cols=24 Identities=25% Similarity=0.159 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|++|+|||||++.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999988643
No 450
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.30 E-value=0.0099 Score=50.39 Aligned_cols=25 Identities=40% Similarity=0.460 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-..|+|+|++|+|||||+..++..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999988764
No 451
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.29 E-value=0.0075 Score=48.81 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998764
No 452
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.29 E-value=0.0094 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999764
No 453
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.29 E-value=0.011 Score=54.07 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.7
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-+++ |+.+.|.|++|+||||++..++..
T Consensus 103 Gl~~---G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIET---RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEET---TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCC---CcEEEEECCCCCCHhHHHHHHHHH
Confidence 4566 999999999999999999988864
No 454
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.28 E-value=0.011 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998754
No 455
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.27 E-value=0.01 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998753
No 456
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.26 E-value=0.01 Score=50.00 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988764
No 457
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 36999999999999999888764
No 458
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.011 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 459
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.21 E-value=0.011 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|++|+|||||++.+.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999874
No 460
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.20 E-value=0.0094 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
...|+|+|++|+|||||++.+.+.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999988753
No 461
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.20 E-value=0.011 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.+.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999988643
No 462
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.20 E-value=0.0093 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998653
No 463
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.18 E-value=0.012 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
-.|+|+|.+|+|||||++.+.+...
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4799999999999999998877543
No 464
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.17 E-value=0.008 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999887654
No 465
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.15 E-value=0.012 Score=48.75 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999988753
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.15 E-value=0.012 Score=49.51 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.|.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999998764
No 467
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.10 E-value=0.011 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.-.|+|+|++|+|||||++.|.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998764
No 468
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.08 E-value=0.013 Score=48.89 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.|+|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998643
No 469
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.08 E-value=0.012 Score=52.01 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
-.|+|+|.+|+|||||++.|.+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999874
No 470
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.08 E-value=0.0068 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALD 119 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~ 119 (287)
+..+.|.||+|+|||++++.++..++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34699999999999999999999876
No 471
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.03 E-value=0.0078 Score=48.92 Aligned_cols=22 Identities=41% Similarity=0.409 Sum_probs=9.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHh
Q 023118 95 QCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~ 116 (287)
-.|+|+|++|+|||||++.+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998864
No 472
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.02 E-value=0.013 Score=49.51 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCHHHHHHHHHh
Q 023118 95 QCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~ 116 (287)
-.|+|+|++|+|||||++.+.+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999875
No 473
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.01 E-value=0.013 Score=52.23 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
-.|+|+|.+|||||||++.|.+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998753
No 474
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.01 E-value=0.011 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 92 LDGQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 92 l~g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
++|++++|+|++|+|||||++.|+...
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 349999999999999999999887643
No 475
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.014 Score=48.03 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999865
No 476
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.00 E-value=0.016 Score=49.53 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.7
Q ss_pred eccCCCCcEEEEEcCCCCCHHHHHHHHH
Q 023118 88 VASCLDGQCLFLVGMMGSGKTTVGEILS 115 (287)
Q Consensus 88 i~~~l~g~~i~LvG~~GsGKSTl~k~La 115 (287)
+++ |+.+.|.|++|+||||++--++
T Consensus 27 l~~---G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPE---GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EET---TCEEEEECCTTSSHHHHHHHHH
T ss_pred CCC---CeEEEEEeCCCCCHHHHHHHHH
Confidence 566 9999999999999999986554
No 477
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.98 E-value=0.011 Score=54.77 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.++|+|++|+|||||++.|++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5689999999999999999998764
No 478
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.97 E-value=0.014 Score=54.10 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=27.5
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHhccC--Cccccc
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSDALD--YTFADS 125 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~l~--~~fid~ 125 (287)
.+.+ |..+.|.||+|+|||||+..++...+ ..|++.
T Consensus 119 Gi~~---gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYA---SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEE---SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCC---CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 3555 88889999999999999999986422 335555
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.96 E-value=0.0067 Score=58.19 Aligned_cols=33 Identities=33% Similarity=0.527 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc-----CCccccch
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL-----DYTFADSD 126 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l-----~~~fid~d 126 (287)
..+|+|+|++|+||||++..||..+ ..-++|+|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3689999999999999999999875 34556665
No 480
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.94 E-value=0.013 Score=59.59 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
...+.|+||+|+||||+++.||..+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999986
No 481
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.94 E-value=0.012 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.-.|+|+|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999998864
No 482
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.93 E-value=0.011 Score=60.94 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCCcccc--chhHH
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDYTFAD--SDKYV 129 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~~fid--~d~~i 129 (287)
...+.|.||+|||||.+++.+|..++.+|+. +..++
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~ 548 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHH
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhh
Confidence 4568899999999999999999999999964 44544
No 483
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.92 E-value=0.012 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999987653
No 484
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.92 E-value=0.011 Score=53.83 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=28.0
Q ss_pred eccccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 80 LLKAKGREVASCLDGQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 80 il~~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+++.--+.+ |+.+.|.|++|+||||++..++..
T Consensus 57 ~LD~~lgGl~~---G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 57 ELDRMTYGYKR---RNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHSSBCT---TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCC---CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35555445777 999999999999999999888743
No 485
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.90 E-value=0.0098 Score=53.62 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCcccc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDYTFAD 124 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~~fid 124 (287)
.+.+.||+|+||||+++.++..++.+|+.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 55667779999999999999999887754
No 486
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.90 E-value=0.015 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
..|+|+|.+|+|||||++.|.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 487
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.89 E-value=0.0067 Score=51.15 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.-.|+|+|++|+|||||++.|.+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998754
No 488
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.88 E-value=0.014 Score=52.23 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
--.|+|+|.+|+|||||++.|.+.-
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999998764
No 489
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.88 E-value=0.013 Score=55.02 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l 118 (287)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998863
No 490
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.86 E-value=0.015 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 96 CLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
.+.|.||+|+||||+++.++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999988764
No 491
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.0095 Score=54.93 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
+.++.|.||+|+|||++.+.++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999887
No 492
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=94.85 E-value=0.011 Score=54.80 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhccCC
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDALDY 120 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l~~ 120 (287)
|..|+|=|+-||||||+++.|+..++.
T Consensus 7 ~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 7 IVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 789999999999999999999998864
No 493
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.85 E-value=0.017 Score=50.43 Aligned_cols=24 Identities=29% Similarity=0.157 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
|..+.+.|++|+||||++-.++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHH
Confidence 889999999999999987665543
No 494
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.84 E-value=0.016 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHh
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.-.|+|+|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45799999999999999988875
No 495
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.84 E-value=0.016 Score=48.41 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023118 96 CLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 96 ~i~LvG~~GsGKSTl~k~La~~ 117 (287)
.|+|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6999999999999999998754
No 496
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.81 E-value=0.018 Score=52.29 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=24.0
Q ss_pred eeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 87 EVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 87 ~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
-+++ |+.+.|.|++|+||||++..++.
T Consensus 94 Gl~~---g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLES---QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEET---TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccC---CeEEEEECCCCCCHHHHHHHHHH
Confidence 4566 99999999999999999998875
No 497
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.80 E-value=0.012 Score=57.72 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=26.4
Q ss_pred ccceeeccCCCCcEEEEEcCCCCCHHHHHHHHHh
Q 023118 83 AKGREVASCLDGQCLFLVGMMGSGKTTVGEILSD 116 (287)
Q Consensus 83 ~~s~~i~~~l~g~~i~LvG~~GsGKSTl~k~La~ 116 (287)
.+.+.+.. +.++.|.|++||||||+++.|..
T Consensus 159 pv~ldL~~---~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAK---MPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGG---SCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEccc---CceEEEECCCCCCHHHHHHHHHH
Confidence 35567777 89999999999999999998764
No 498
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.76 E-value=0.017 Score=54.17 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
+..|+|+|.+|+|||||++.|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 467999999999999999999884
No 499
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.74 E-value=0.017 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHHhc
Q 023118 95 QCLFLVGMMGSGKTTVGEILSDA 117 (287)
Q Consensus 95 ~~i~LvG~~GsGKSTl~k~La~~ 117 (287)
..|+|+|.+|+|||||++.|.+.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999874
No 500
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.73 E-value=0.02 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.106 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHHHHHhcc
Q 023118 94 GQCLFLVGMMGSGKTTVGEILSDAL 118 (287)
Q Consensus 94 g~~i~LvG~~GsGKSTl~k~La~~l 118 (287)
|..+++.|||||||||.+--++..+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 8899999999999999877666543
Done!