Query 023122
Match_columns 287
No_of_seqs 231 out of 1366
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0748 Predicted membrane pro 100.0 3.1E-56 6.8E-61 406.2 18.7 263 12-287 11-278 (286)
2 PF03006 HlyIII: Haemolysin-II 100.0 2E-52 4.3E-57 368.7 20.2 221 42-272 1-222 (222)
3 COG1272 Predicted membrane pro 100.0 1.6E-46 3.5E-51 330.0 18.2 211 41-281 15-225 (226)
4 TIGR01065 hlyIII channel prote 100.0 9.5E-46 2.1E-50 323.8 20.1 203 48-278 1-203 (204)
5 PRK15087 hemolysin; Provisiona 100.0 2.1E-44 4.5E-49 318.1 22.0 205 42-279 11-216 (219)
6 KOG4243 Macrophage maturation- 100.0 1.5E-29 3.3E-34 218.0 6.3 207 40-280 77-289 (298)
7 PF05875 Ceramidase: Ceramidas 97.9 0.0028 6.2E-08 57.4 19.9 199 47-275 24-234 (262)
8 PF04080 Per1: Per1-like ; In 96.6 0.17 3.7E-06 46.2 16.5 169 94-277 89-264 (267)
9 PF13965 SID-1_RNA_chan: dsRNA 96.4 0.51 1.1E-05 47.7 19.7 29 89-117 311-339 (570)
10 KOG2970 Predicted membrane pro 95.7 0.43 9.2E-06 43.9 13.8 43 92-140 139-181 (319)
11 PF12036 DUF3522: Protein of u 93.3 0.71 1.5E-05 39.9 9.2 13 103-115 39-51 (186)
12 COG5237 PER1 Predicted membran 64.9 1E+02 0.0022 28.2 10.4 75 49-145 108-183 (319)
13 KOG4255 Uncharacterized conser 58.5 1.7E+02 0.0037 28.0 11.2 108 99-209 57-166 (439)
14 KOG2329 Alkaline ceramidase [L 47.8 61 0.0013 29.7 6.4 69 45-134 30-98 (276)
15 COG4323 Predicted membrane pro 42.0 16 0.00036 27.5 1.5 67 119-196 22-90 (105)
16 PF14145 YrhK: YrhK-like prote 33.4 1.6E+02 0.0036 20.3 5.9 48 49-110 5-52 (59)
17 PF02694 UPF0060: Uncharacteri 29.1 2.5E+02 0.0054 22.1 6.3 32 222-255 60-91 (107)
18 PF04713 Pox_I5: Poxvirus prot 26.8 99 0.0022 22.8 3.5 25 118-142 42-66 (77)
19 PF06609 TRI12: Fungal trichot 25.4 3.4E+02 0.0074 27.9 8.3 22 121-142 232-253 (599)
20 PRK02237 hypothetical protein; 25.2 3.4E+02 0.0075 21.4 6.5 25 229-254 68-92 (109)
21 PF02076 STE3: Pheromone A rec 22.9 3.7E+02 0.0081 24.6 7.4 54 220-278 30-83 (283)
22 COG5500 Predicted integral mem 21.9 84 0.0018 25.5 2.5 44 188-236 58-101 (159)
23 PF14015 DUF4231: Protein of u 21.5 2.6E+02 0.0057 21.1 5.4 28 118-145 11-38 (112)
No 1
>KOG0748 consensus Predicted membrane proteins, contain hemolysin III domain [General function prediction only; Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-56 Score=406.22 Aligned_cols=263 Identities=42% Similarity=0.724 Sum_probs=225.6
Q ss_pred ccchhhhcccCCCC----ccccchHhHHhhcCCCCCCCCchhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccc
Q 023122 12 LDSLQRFRDMLPVA----DWHKIQEQLLSCFPSMPNIPDPHRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQ 87 (287)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~s~~~c~~slf~~~n~eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~ 87 (287)
+-++.|+|+.+|+. .+|||..|.++|++|+|++|| |+.|+|||++|++++..... ......+ .|...+
T Consensus 11 l~~~~~lP~~~~dn~yi~~gyR~~~s~~~c~~S~f~~hN--Et~NiwTHLlg~i~f~~~~~-~~~~~~~-----~~~~~~ 82 (286)
T KOG0748|consen 11 LLPWDELPEWLKDNEYILTGYRPGSSFRACFKSIFQWHN--ETLNIWTHLLGFILFLFLLI-LFMPRVL-----LPVDSH 82 (286)
T ss_pred cCChhhCCHHHhcCcceeCccCCCCCHHHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHH-HHccccc-----cccccc
Confidence 45667999999994 788899999999999999999 99999999999997642111 1111111 111111
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHH
Q 023122 88 AITRWPIFTFLGGAMFCLLASSTCHLLCCHSERLSYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLG 167 (287)
Q Consensus 88 ~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~~~~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la 167 (287)
..+. ..+|..+ ++++|++||+++|||++.++.|.++||+||.++|.||++|..||+++|.+.++..|++.+..++
T Consensus 83 ~~~~--~~lf~~~---~~~~S~~~H~~~~~s~~~~~~~~~lDY~GIs~li~gS~~~~~yy~f~c~~~~~~iy~~~~~~lg 157 (286)
T KOG0748|consen 83 LSEK--IFLFFLG---CLLLSSLYHLFSCHSEKVSRFFLKLDYAGISLLIIGSFLPIIYYAFYCHPFFRLIYLPIILVLG 157 (286)
T ss_pred chHH--HHHHHHH---HHHHHHHHHHHhcccHHHHHHHHHccHHhhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 1121 4455555 3334999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccccCcccchHHHHHHHHHHHhhhhHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHhhhcCCccCC
Q 023122 168 IATIVISLLPVFEKPKFRSFRASLFFGMGISGVAPVLHKLILFRDK-PEAVQTTGYEILMGLFYGFGALIYAMRVPERWK 246 (287)
Q Consensus 168 ~~g~~~~~~~~~~~~~~~~lr~~~y~~mg~~~~~p~~~~l~~~~~~-~~~~~~l~~l~~gg~~y~~G~~fy~~~~PEr~~ 246 (287)
+++++.++.++++++++|..|+..|+.+|.++++|+.|++..+|+. +.....+.+...++++|.+|++||++|+||||+
T Consensus 158 i~~~~~~l~~~~~~~~~r~~R~~~f~~~~~~~i~P~~h~~~~~g~~~~~~~~~~~~~~~~~~~yi~ga~fY~~riPER~~ 237 (286)
T KOG0748|consen 158 LLAIFVSLSDKFRTPKRRPLRAGVFLLLGLSGILPLLHRLILFGGRGPEVVIALGYVILMAVLYLLGALFYATRIPERWF 237 (286)
T ss_pred HHHheeechhhhCCccchhhHHHHHHHHHHhhccHhhhheeeecCCccceehhhhHHHHHHHHHHHHHHHhhcCCCcccC
Confidence 9999888888898888889999999999999999999999998875 345678999999999999999999999999999
Q ss_pred CCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 023122 247 PGKFDIAGHSHQLFHVLVVAGAYTHYLDGLVYLRWRDLEGC 287 (287)
Q Consensus 247 PG~FD~~G~sHqiwHlfV~~g~~~h~~ai~~~~~~r~~~~c 287 (287)
|||||++||||||||++|++|+++|+.++..++++|++..|
T Consensus 238 PGkfD~~G~SHQifHv~vv~~a~~~~~a~~~~~~~~~~~~~ 278 (286)
T KOG0748|consen 238 PGKFDIWGHSHQIFHVLVVLAALFHLEAVLLDYEWRHSHLC 278 (286)
T ss_pred CCccceeCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999954
No 2
>PF03006 HlyIII: Haemolysin-III related; InterPro: IPR004254 Members of this family are integral membrane proteins. This family includes proteins that are hemolysin-III homologs.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2e-52 Score=368.69 Aligned_cols=221 Identities=38% Similarity=0.701 Sum_probs=192.2
Q ss_pred CCCCCchhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCCch-H
Q 023122 42 PNIPDPHRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCHSE-R 120 (287)
Q Consensus 42 f~~~n~eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~-~ 120 (287)
|++|| |++|+|||++|++++......+... .+.. ..++.+++++.+|.+|+++++.+||+||+++|+|+ +
T Consensus 1 F~~hN--Et~NiwtHll~~~~~~~~~~~l~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~St~yH~f~~~s~~~ 71 (222)
T PF03006_consen 1 FQLHN--ETVNIWTHLLGAILFLALLIFLLSL-ASSP------SFSPWDYIPFLIYLLSAILCFLCSTLYHLFSCHSEGK 71 (222)
T ss_pred CCcch--hHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc------CCCHHHHHHHHHHHHHHHHHHHhHHHhhCCCcCCcHH
Confidence 78999 9999999999999775322222211 1111 01457899999999999999999999999999998 8
Q ss_pred HHHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHhccccccCcccchHHHHHHHHHHHhh
Q 023122 121 LSYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVISLLPVFEKPKFRSFRASLFFGMGISGV 200 (287)
Q Consensus 121 ~~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~~~~~~~~~~~~~~lr~~~y~~mg~~~~ 200 (287)
.+++++++||+||+++|+||++|..+++++|++.+++.++..+|++++.|+.....+.+.++|+|.+|+..|+++||+++
T Consensus 72 ~~~~~~~lD~~gI~l~i~gs~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~ 151 (222)
T PF03006_consen 72 VYHIFLRLDYAGIFLLIAGSYTPFIYYGFYCHPWLGWFYLAFIWILALIGIVLSLFPCFSSPRFRWLRTIFFLLLGWSGI 151 (222)
T ss_pred HHHHHHhcchhhhhHhHhhhhhhHHHhhccccchHHHHHHHHHHHHHHHhHHhhcchhhcCCccceeeehHhHHHHHHHH
Confidence 99999999999999999999999999999898999999999999999999988777777778889999999999999999
Q ss_pred hhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcCCccCCCCcccCCCCchHHHHHHHHHHHHHHH
Q 023122 201 APVLHKLILFRDKPEAVQTTGYEILMGLFYGFGALIYAMRVPERWKPGKFDIAGHSHQLFHVLVVAGAYTHY 272 (287)
Q Consensus 201 ~p~~~~l~~~~~~~~~~~~l~~l~~gg~~y~~G~~fy~~~~PEr~~PG~FD~~G~sHqiwHlfV~~g~~~h~ 272 (287)
+|+.++....+....+.. +.+++.++++|++|++||++|+|||+.||+||++|+||||||++|++|+.+||
T Consensus 152 ~p~~~~~~~~~~~~~~~~-~~~~~~~~~~y~~G~~fy~~~~PEr~~pg~fD~~g~sHqi~Hi~v~~~~~~h~ 222 (222)
T PF03006_consen 152 IPIFHRIFFLGGWGSPDP-LWLLILGGVLYLLGAVFYATRIPERWFPGKFDIWGHSHQIWHIFVVLAALCHY 222 (222)
T ss_pred hhhHHHHHHhccccchHH-HHHHHHHHHHHHHhHHHhhhccccccCCCCcCCCCccHHHHHHHHHHHHHHHC
Confidence 999986665443222335 88999999999999999999999999999999999999999999999999996
No 3
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=100.00 E-value=1.6e-46 Score=329.96 Aligned_cols=211 Identities=24% Similarity=0.329 Sum_probs=182.0
Q ss_pred CCCCCCchhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCCchH
Q 023122 41 MPNIPDPHRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCHSER 120 (287)
Q Consensus 41 lf~~~n~eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~~ 120 (287)
.++++| |++|+|||++|+.++.+++..+...... ..++.+.+++.+|+++++.|+++||+||.++++ +|
T Consensus 15 ~~~~~~--e~~n~~tHlvGail~i~~l~~l~~~a~~--------~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~-~~ 83 (226)
T COG1272 15 SYSWHE--EIANAITHLIGAILAIVGLVLLLVYALI--------TGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNG-QK 83 (226)
T ss_pred cccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCc-hH
Confidence 788899 9999999999999887544444333222 136789999999999999999999999999975 89
Q ss_pred HHHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHhccccccCcccchHHHHHHHHHHHhh
Q 023122 121 LSYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVISLLPVFEKPKFRSFRASLFFGMGISGV 200 (287)
Q Consensus 121 ~~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~~~~~~~~~~~~~~lr~~~y~~mg~~~~ 200 (287)
.|+++||+||++|+++|+|||||++++.+ ++.+++.++.++|.+|++|+ ..|.+.++|+|++++.+|++|||+++
T Consensus 84 ~k~~~rk~DH~~I~vLIAgSyTP~~l~~l--~~~~~~~~~~iiW~lal~Gi---~~kl~~~~~~r~ls~~~yl~mGw~~v 158 (226)
T COG1272 84 AKAILRKFDHSGIYVLIAGSYTPFLLVGL--YGPLGWILLGLIWGLALAGI---LFKLFFKKRFRKLSLVLYLAMGWLGL 158 (226)
T ss_pred HHHHHHHccHHHHHHHHHHhhHHHhHHHh--ccchHHHHHHHHHHHHHHHH---hhhhhccCcCceeeehhhHHHHHHHH
Confidence 99999999999999999999999999987 44489999999999999999 66677778999999999999999998
Q ss_pred hhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcCCccCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 023122 201 APVLHKLILFRDKPEAVQTTGYEILMGLFYGFGALIYAMRVPERWKPGKFDIAGHSHQLFHVLVVAGAYTHYLDGLVYLR 280 (287)
Q Consensus 201 ~p~~~~l~~~~~~~~~~~~l~~l~~gg~~y~~G~~fy~~~~PEr~~PG~FD~~G~sHqiwHlfV~~g~~~h~~ai~~~~~ 280 (287)
+|+ +.+.. ..+..++.++++||+.|++|++||+.|+ ||+ +++|||||+||++|+.|||.+++.++.
T Consensus 159 ~~~-~~l~~----~l~~~~~~~l~~GGv~YsvG~ifY~~~~-~~~--------~~~H~iwH~fVv~ga~~Hf~ai~~~~~ 224 (226)
T COG1272 159 IVI-KPLIA----KLGLIGLVLLALGGVLYSVGAIFYVLRI-DRI--------PYSHAIWHLFVVGGAACHFIAILFYVI 224 (226)
T ss_pred HHH-HHHHH----hCchHHHHHHHHHhHHheeeeEEEEEee-ccC--------CchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887 55554 2345789999999999999999999997 343 389999999999999999999998875
Q ss_pred H
Q 023122 281 W 281 (287)
Q Consensus 281 ~ 281 (287)
.
T Consensus 225 ~ 225 (226)
T COG1272 225 L 225 (226)
T ss_pred c
Confidence 4
No 4
>TIGR01065 hlyIII channel protein, hemolysin III family. This family includes proteins from pathogenic and non-pathogenic bacteria, Homo sapiens and Drosophila. In Bacillus cereus, a pathogen, it has been show to function as a channel-forming cytolysin. The human protein is expressed preferentially in mature macrophages, consistent with a role cytolytic role.
Probab=100.00 E-value=9.5e-46 Score=323.76 Aligned_cols=203 Identities=19% Similarity=0.208 Sum_probs=172.5
Q ss_pred hhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCCchHHHHHHHH
Q 023122 48 HRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCHSERLSYIMLR 127 (287)
Q Consensus 48 eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~~~~~~~~~ 127 (287)
||++|+|||++|++++..+...+.....+ + .+..++.++.+|++|++.|+++||+||+++ +|++.++.++|
T Consensus 1 ~e~~N~~tH~~g~~~~~~~~~~l~~~~~~-~-------~~~~~~~~~~vy~~~~~~~~~~St~yH~~~-~s~~~~~~~~r 71 (204)
T TIGR01065 1 EEIANAITHGIGAVLSIIALALLVIYSWD-H-------GGAVAVLGFSIYGISLILLFLVSTLYHSIP-KGSKAKNWLRK 71 (204)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHh-c-------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCc-CchhHHHHHHH
Confidence 59999999999999886444434322211 1 245689999999999999999999999999 78999999999
Q ss_pred hhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHhccccccCcccchHHHHHHHHHHHhhhhHHHHH
Q 023122 128 LDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVISLLPVFEKPKFRSFRASLFFGMGISGVAPVLHKL 207 (287)
Q Consensus 128 lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~~~~~~~~~~~~~~lr~~~y~~mg~~~~~p~~~~l 207 (287)
+||+||+++|+|||||++++++. +.+++.++..+|.++++|+ ..|.++.+|+|++|+.+|++|||++++|+ +.+
T Consensus 72 lD~~gI~~lIaGsytP~~~~~~~--~~~~~~~~~~iw~la~~gi---~~~~~~~~~~r~~r~~~y~~~G~~~v~~~-~~~ 145 (204)
T TIGR01065 72 IDHSMIYVLIAGTYTPFLLLALP--GPLGWTVLWIIWGLAIGGI---IYKLFFHKRPRWLSLFLYLIMGWLVVLVI-KPL 145 (204)
T ss_pred ccHHHHHHHHHHhhHHHHHHHcC--CcHHHHHHHHHHHHHHHHH---HHHHHccCCCchhHHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999974 3457778889999999988 56778889999999999999999988875 434
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcCCccCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 023122 208 ILFRDKPEAVQTTGYEILMGLFYGFGALIYAMRVPERWKPGKFDIAGHSHQLFHVLVVAGAYTHYLDGLVY 278 (287)
Q Consensus 208 ~~~~~~~~~~~~l~~l~~gg~~y~~G~~fy~~~~PEr~~PG~FD~~G~sHqiwHlfV~~g~~~h~~ai~~~ 278 (287)
.. ..+..++.++++||++|++|++||+.|+|||+.| |||||+||++|+.+|+.+++.+
T Consensus 146 ~~----~~~~~~~~~l~~gg~~Y~~G~~fY~~~~p~~~~~---------H~iwH~fV~~g~~~h~~~i~~~ 203 (204)
T TIGR01065 146 YH----NLPGAGFSLLAAGGLLYTVGAIFYALKWPIPFTY---------HAIWHLFVLGASACHFVAILFY 203 (204)
T ss_pred HH----hCCHHHHHHHHHHhHHHHcchHheeecCCCCCCc---------ChHHHHHHHHHHHHHHHHHHHH
Confidence 32 2345678999999999999999999999998633 9999999999999999999876
No 5
>PRK15087 hemolysin; Provisional
Probab=100.00 E-value=2.1e-44 Score=318.13 Aligned_cols=205 Identities=18% Similarity=0.262 Sum_probs=171.3
Q ss_pred CCCCCchhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCCchHH
Q 023122 42 PNIPDPHRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCHSERL 121 (287)
Q Consensus 42 f~~~n~eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~~~ 121 (287)
++++| |++|+|||++|++++..+...+.....+.+ .+..+..++.+|++|+++|+.+||+||+++ +++.
T Consensus 11 ~~~~e--E~~N~~tH~ig~~~a~~~~~~l~~~~~~~~-------~~~~~~~~~~vy~~s~~~l~~~StlYH~~~--~~~~ 79 (219)
T PRK15087 11 YSLAE--EIANSISHGIGLVFGIVGLVLLLVQAVDAN-------ADATAITSYSLYGGSMILLFLASTLYHAIP--HQRA 79 (219)
T ss_pred cccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--chHH
Confidence 45677 999999999999987644443433221111 134577899999999999999999999998 4788
Q ss_pred HHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHhccccccCcccchHHHHHHHHHHHhhh
Q 023122 122 SYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVISLLPVFEKPKFRSFRASLFFGMGISGVA 201 (287)
Q Consensus 122 ~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~~~~~~~~~~~~~~lr~~~y~~mg~~~~~ 201 (287)
++++||+||+||+++|+|||||++++++ ++.+++.++..+|.++++|+ ..+.+..+|+|++|+.+|++|||++++
T Consensus 80 ~~~~~rlDh~~I~llIaGsytP~~~~~~--~~~~~~~l~~~iW~~a~~Gi---~~~~~~~~~~r~l~~~~Yl~mGw~~v~ 154 (219)
T PRK15087 80 KRWLKKFDHCAIYLLIAGTYTPFLLVGL--DSPLARGLMIVIWSLALLGI---LFKLAFAHRFKVLSLVTYLAMGWLSLI 154 (219)
T ss_pred HHHHHHccHHHHHHHHHHhhHHHHHHHc--cCHHHHHHHHHHHHHHHHHH---HHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987 34578889999999999998 556677889999999999999999999
Q ss_pred hHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhhhc-CCccCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 023122 202 PVLHKLILFRDKPEAVQTTGYEILMGLFYGFGALIYAMR-VPERWKPGKFDIAGHSHQLFHVLVVAGAYTHYLDGLVYL 279 (287)
Q Consensus 202 p~~~~l~~~~~~~~~~~~l~~l~~gg~~y~~G~~fy~~~-~PEr~~PG~FD~~G~sHqiwHlfV~~g~~~h~~ai~~~~ 279 (287)
|+.+... ..+..++.++++||++|++|++||+.| .| ++|||||+||++|+.+|+.+++.++
T Consensus 155 ~~~~l~~-----~~~~~~l~~l~~GG~~Y~~G~~fY~~~~~p------------~~H~IwH~fVl~ga~~H~~ai~~~~ 216 (219)
T PRK15087 155 VIYQLAI-----KLAIGGVTLLAVGGVVYSLGVIFYVCKRIP------------YNHAIWHGFVLGGSVCHFLAIYLYV 216 (219)
T ss_pred HHHHHHH-----hCCHHHHHHHHHHhHHHHhhHHHHccCCCC------------CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9855432 234578899999999999999999986 34 4899999999999999999999876
No 6
>KOG4243 consensus Macrophage maturation-associated protein [Defense mechanisms]
Probab=99.96 E-value=1.5e-29 Score=217.98 Aligned_cols=207 Identities=16% Similarity=0.181 Sum_probs=163.4
Q ss_pred CCCCCCCchhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCC-c
Q 023122 40 SMPNIPDPHRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCH-S 118 (287)
Q Consensus 40 slf~~~n~eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~-s 118 (287)
.-.|+++.|+++|..||+++++=++.++..+...+ .+.++.+..++|+.+.+.+|..||.||..+.. +
T Consensus 77 ~aYqPT~~EhvAN~~tHai~I~PaIl~~~~l~~~s-----------~~d~q~i~awIYG~~lc~LFt~STvfH~~~~~~~ 145 (298)
T KOG4243|consen 77 GAYQPTEYEHVANCYTHAIWIVPAILGSALLHRLS-----------DDDWQKITAWIYGMGLCALFTVSTVFHIVSWKKS 145 (298)
T ss_pred CCCCCchHHHHHhhHhhHhhhhHHHHHHHHHHHhh-----------hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999998886654444443322 14578899999999999999999999997642 1
Q ss_pred -----hHHHHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHhccccccCcccchHHHHHH
Q 023122 119 -----ERLSYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVISLLPVFEKPKFRSFRASLFF 193 (287)
Q Consensus 119 -----~~~~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~~~~~~~~~~~~~~lr~~~y~ 193 (287)
++.++.+.++|-+.||++|++||+|++-.. -|+ .++.-+-.++|++|.+|+ +....+.+|+|.+++.+|+
T Consensus 146 hqn~~r~l~~~lH~cDRa~IY~FIAaSY~PWLtLr-~~g-~~~~~m~W~IWlmA~~Gi---~Yq~~fHErYK~lEt~~Yl 220 (298)
T KOG4243|consen 146 HQNKLRTLEHCLHMCDRAVIYFFIAASYAPWLTLR-ELG-PLASHMRWFIWLMAAGGI---IYQFLFHERYKVLETFFYL 220 (298)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhcccccccHH-hhC-cHHHHHHHHHHHHHhcch---hhhhhHHHHHHHHHHHHHH
Confidence 346789999999999999999999987644 333 345556678999999999 4445677899999999999
Q ss_pred HHHHHhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhhhcCCccCCCCcccCCCCchHHHHHHHHHHHHHHHH
Q 023122 194 GMGISGVAPVLHKLILFRDKPEAVQTTGYEILMGLFYGFGALIYAMRVPERWKPGKFDIAGHSHQLFHVLVVAGAYTHYL 273 (287)
Q Consensus 194 ~mg~~~~~p~~~~l~~~~~~~~~~~~l~~l~~gg~~y~~G~~fy~~~~PEr~~PG~FD~~G~sHqiwHlfV~~g~~~h~~ 273 (287)
+||..-.+.+. . .....++.++..||.+|.+|++|+.++ ...| ..|+|||+||++|+-||+.
T Consensus 221 vmg~gPalvv~----s----m~~~~Gl~~l~~GG~~Y~lGvvFFK~D---G~ip-------fAHAIWHLFV~l~A~cHyY 282 (298)
T KOG4243|consen 221 VMGFGPALVVT----S----MNNTDGLQELATGGLFYCLGVVFFKSD---GIIP-------FAHAIWHLFVALAAGCHYY 282 (298)
T ss_pred HHhcCceEEEE----E----eCCchhHHHHHhCCEEEEEEEEEEecC---Ccee-------hHHHHHHHHHHHHcchhHH
Confidence 99974332221 0 112578999999999999999999987 2334 6899999999999999999
Q ss_pred HHHHHHH
Q 023122 274 DGLVYLR 280 (287)
Q Consensus 274 ai~~~~~ 280 (287)
|++.++.
T Consensus 283 Ai~~~Ly 289 (298)
T KOG4243|consen 283 AIWKYLY 289 (298)
T ss_pred HHHHHHh
Confidence 9998875
No 7
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=97.89 E-value=0.0028 Score=57.45 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=98.2
Q ss_pred chhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCCchHHHHHHH
Q 023122 47 PHRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCHSERLSYIML 126 (287)
Q Consensus 47 ~eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~~~~~~~~ 126 (287)
+-|-.|++|.+.-++++..+.. ...+ + ..+ ..+.+..++.+..=..|+.||+.. ++..+
T Consensus 24 iAEf~NtlSNl~fi~~al~gl~--~~~~---~---------~~~-~~~~l~~~~l~~VGiGS~~FHaTl------~~~~q 82 (262)
T PF05875_consen 24 IAEFWNTLSNLAFIVAALYGLY--LARR---R---------GLE-RRFALLYLGLALVGIGSFLFHATL------SYWTQ 82 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHH--HHhh---c---------ccc-chhHHHHHHHHHHHHhHHHHHhCh------hhhHH
Confidence 3499999999987666642221 1111 1 111 233444456666668899999865 34567
Q ss_pred HhhhhHHHHHHhhcchhhhhhhhcc---ccchhhHHHHHHHHHHHHHHHHHhccccccCcccchHHHHHHHHHHHhhhhH
Q 023122 127 RLDYAGIAALISTSFYPPIYYSFMC---YPFLCNLYLGFITVLGIATIVISLLPVFEKPKFRSFRASLFFGMGISGVAPV 203 (287)
Q Consensus 127 ~lD~~gI~llIaGsytp~~~~~~~~---~~~~~~~~~~~~~~la~~g~~~~~~~~~~~~~~~~lr~~~y~~mg~~~~~p~ 203 (287)
.+|-..|...+.. .++..+.. ++..+..+...+.+.+++.. ..-.. .++. ......|..+.....+..
T Consensus 83 l~DelPMl~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~t---~~~~~-~~~p-~~~~~~f~~~~~~~~~~~ 153 (262)
T PF05875_consen 83 LLDELPMLWATLL----FLYIVLTRRYSSPRYRLALPLLLFIYAVVVT---VLYFV-LDNP-VFHQIAFASLVLLVILRS 153 (262)
T ss_pred HhhhhhHHHHHHH----HHHHHhcccccCchhhHHHHHHHHHHHHHHH---HHHhh-hccc-hhhhhhHHHHHHHHHHHH
Confidence 7898777654321 12222211 11222222222222222222 21111 1222 233344555544333322
Q ss_pred HHHHHHh-cCCCcchhHHHHHHHHHHHHHHHHHHhhhcCC--ccCCCCc------ccCCCCchHHHHHHHHHHHHHHHHH
Q 023122 204 LHKLILF-RDKPEAVQTTGYEILMGLFYGFGALIYAMRVP--ERWKPGK------FDIAGHSHQLFHVLVVAGAYTHYLD 274 (287)
Q Consensus 204 ~~~l~~~-~~~~~~~~~l~~l~~gg~~y~~G~~fy~~~~P--Er~~PG~------FD~~G~sHqiwHlfV~~g~~~h~~a 274 (287)
...+... .+.........+...+.+.+.+|..+...+.. +.+...+ ..+.-.-|.+||+++.+|++.....
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~a~~~W~iD~~~C~~~~~~~~~~g~p~~~~le~H~~WHilt~ig~Y~~~~~ 233 (262)
T PF05875_consen 154 IYLIRRRVRDACRRRRARRLLLFGLALFLVAFFFWNIDRIFCSSLRAIRFPYGLPLGFLLELHAWWHILTGIGAYLLIVF 233 (262)
T ss_pred HHHHHHhcCchhhchHHHHHHHHHHHHHHHHHHHHHhHHHHHccccccccccCCcchhHHhHHHHHHHHHHHHHHHHHHH
Confidence 2222110 00011233444566788889999999877642 1111111 1112247999999999999876654
Q ss_pred H
Q 023122 275 G 275 (287)
Q Consensus 275 i 275 (287)
.
T Consensus 234 ~ 234 (262)
T PF05875_consen 234 V 234 (262)
T ss_pred H
Confidence 3
No 8
>PF04080 Per1: Per1-like ; InterPro: IPR007217 A member of this family has been implemented in protein processing in the endoplasmic reticulum [].
Probab=96.63 E-value=0.17 Score=46.15 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHH
Q 023122 94 IFTFLGGAMFCLLASSTCHLLCCHSERLSYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVI 173 (287)
Q Consensus 94 ~~iy~~~~~~~~~~St~yH~~~~~s~~~~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~ 173 (287)
..++....+.--+.||++|+--. ..-.++||.+=...|..+..-...-.+ +..... ....++...++++..
T Consensus 89 ~~~~~~v~~naW~wStvFH~RD~------~~TE~lDYf~A~a~vl~~l~~~~~R~f--~l~~~~-~~~~~~~~~~~~~~~ 159 (267)
T PF04080_consen 89 YIIYAIVSMNAWIWSTVFHTRDT------PLTEKLDYFSAGATVLFGLYAAIVRIF--RLYRRR-RLRRIFTALCIAFYI 159 (267)
T ss_pred eehHHHHHHHHHHHHHHHHHhcc------cHhhHhHHhhhHHHHHHHHHHHHHHHh--cccccc-hHHHHHHHHHHHHHH
Confidence 55666677777899999998542 456689999977666655333222222 110011 111112222222211
Q ss_pred HhccccccCccc-chHHHHHHHHHHHhhhhH-HHHHHHhcCCCcc---hh--HHHHHHHHHHHHHHHHHHhhhcCCccCC
Q 023122 174 SLLPVFEKPKFR-SFRASLFFGMGISGVAPV-LHKLILFRDKPEA---VQ--TTGYEILMGLFYGFGALIYAMRVPERWK 246 (287)
Q Consensus 174 ~~~~~~~~~~~~-~lr~~~y~~mg~~~~~p~-~~~l~~~~~~~~~---~~--~l~~l~~gg~~y~~G~~fy~~~~PEr~~ 246 (287)
.=.......++. ...+.+-+++|..-.+-- .+........+.. .. -..+.++-.+.-.+++.+=..++|. +
T Consensus 160 ~Hv~yL~~~~fdY~YNM~~nv~~G~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~lam~LEl~DFpP-~- 237 (267)
T PF04080_consen 160 AHVSYLSFVRFDYGYNMKANVAVGLLQNILWLLWSFRNYRRYPSVKKSYSKRWKLWPILFVVLTILAMSLELFDFPP-I- 237 (267)
T ss_pred HHHHHccccccccHhHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccCc-c-
Confidence 110111112332 123444445554322211 1111111100100 00 0111112234445566666678873 2
Q ss_pred CCcccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 023122 247 PGKFDIAGHSHQLFHVLVVAGAYTHYLDGLV 277 (287)
Q Consensus 247 PG~FD~~G~sHqiwHlfV~~g~~~h~~ai~~ 277 (287)
-+.+| +|.+||+..+.-+...|.-+.+
T Consensus 238 ~~~lD----AHALWHl~Tip~~~~wy~Fl~~ 264 (267)
T PF04080_consen 238 FWLLD----AHALWHLATIPPTYLWYDFLID 264 (267)
T ss_pred cccch----HHHHHHHHHhhHHHHHHHHHHH
Confidence 25788 9999999999888876654443
No 9
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=96.40 E-value=0.51 Score=47.67 Aligned_cols=29 Identities=7% Similarity=-0.088 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhcccCC
Q 023122 89 ITRWPIFTFLGGAMFCLLASSTCHLLCCH 117 (287)
Q Consensus 89 ~~~~~~~iy~~~~~~~~~~St~yH~~~~~ 117 (287)
.+.-....-+++++.-=.+|++||..+++
T Consensus 311 ~~~~~~~~~g~~li~egi~sa~yh~CPn~ 339 (570)
T PF13965_consen 311 QHYGLFYAMGLALIMEGILSACYHICPNR 339 (570)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhcCcCc
Confidence 44456667777777777889999998863
No 10
>KOG2970 consensus Predicted membrane protein [Function unknown]
Probab=95.66 E-value=0.43 Score=43.92 Aligned_cols=43 Identities=16% Similarity=0.050 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHhhhhHHHHHHhhc
Q 023122 92 WPIFTFLGGAMFCLLASSTCHLLCCHSERLSYIMLRLDYAGIAALISTS 140 (287)
Q Consensus 92 ~~~~iy~~~~~~~~~~St~yH~~~~~s~~~~~~~~~lD~~gI~llIaGs 140 (287)
-...+|..-.+.-...|+++|...+ .+-.++||.+-++.+.-+
T Consensus 139 ~l~~I~a~i~mnawiwSsvFH~rD~------~lTEklDYf~A~~~vlf~ 181 (319)
T KOG2970|consen 139 RLWLIYAYIGMNAWIWSSVFHIRDV------PLTEKLDYFSAYLTVLFG 181 (319)
T ss_pred cchhhHHHHHHHHHHHHHhhhhcCC------chHhhhhHHHHHHHHHHH
Confidence 3455666666777889999998764 456789999877665533
No 11
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=93.30 E-value=0.71 Score=39.87 Aligned_cols=13 Identities=23% Similarity=0.260 Sum_probs=9.8
Q ss_pred HHHHHHhhhhccc
Q 023122 103 FCLLASSTCHLLC 115 (287)
Q Consensus 103 ~~~~~St~yH~~~ 115 (287)
..+.+|+.||...
T Consensus 39 ~tm~~S~~YHacd 51 (186)
T PF12036_consen 39 FTMFFSTFYHACD 51 (186)
T ss_pred HHHHHHHhccccc
Confidence 3356799999975
No 12
>COG5237 PER1 Predicted membrane protein [Function unknown]
Probab=64.92 E-value=1e+02 Score=28.16 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=39.6
Q ss_pred hhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHh
Q 023122 49 RLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCHSERLSYIMLRL 128 (287)
Q Consensus 49 E~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~~~~~~~~~l 128 (287)
..+|-++|..|..-.. -.+ .+. ++..+...+.+....+.-...|+++|.-.. .+-+++
T Consensus 108 S~~Nfi~hy~gfh~m~------r~i-~~e---------~~~~R~~~l~wv~igmlAwi~SsvFHird~------~iTekl 165 (319)
T COG5237 108 SFMNFITHYIGFHRML------RKI-LRE---------TRLGRLYYLQWVYIGMLAWISSSVFHIRDN------TITEKL 165 (319)
T ss_pred HHHHHHHHHHHHHHHH------HHh-ccc---------ccccceEEeeHHHHHHHHHHHHhheeeecc------chhhhH
Confidence 4578899999866431 001 111 122222233333333555678999997542 356778
Q ss_pred hhhHHHHHH-hhcchhhh
Q 023122 129 DYAGIAALI-STSFYPPI 145 (287)
Q Consensus 129 D~~gI~llI-aGsytp~~ 145 (287)
||..-.+.+ .|+|-...
T Consensus 166 DYF~AgltVLfGfy~~lv 183 (319)
T COG5237 166 DYFLAGLTVLFGFYMALV 183 (319)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 986544332 35555433
No 13
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.46 E-value=1.7e+02 Score=28.04 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhhcccCCchHHHHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHh--c
Q 023122 99 GGAMFCLLASSTCHLLCCHSERLSYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVISL--L 176 (287)
Q Consensus 99 ~~~~~~~~~St~yH~~~~~s~~~~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~~~--~ 176 (287)
++.+..+..+.+-|..+..-+++--++-.+--+.+.-++....--..-+.+ +..-.|.+..+...+|++...-+. .
T Consensus 57 la~lgpLi~tllhk~~~~~i~~VPiif~ll~~a~v~~l~laflW~~ts~V~--g~~hS~afl~L~F~LAivdc~SnVtFL 134 (439)
T KOG4255|consen 57 LANLGPLIVTLLHKGAPGTIPTVPIIFVLLLLACVCQLGLAFLWHDTSPVF--GALHSWAFLSLLFGLAIVDCTSNVTFL 134 (439)
T ss_pred HHcchhHHHHHHHhhCCCcCCCCCchhHHHHHHHHHHHHHHHHHhcchhhh--cCcchHHHHHHHHHHHHHHhhccchhh
Confidence 444556667777777764334443333333333333332222111111111 222345566677777776543222 2
Q ss_pred cccccCcccchHHHHHHHHHHHhhhhHHHHHHH
Q 023122 177 PVFEKPKFRSFRASLFFGMGISGVAPVLHKLIL 209 (287)
Q Consensus 177 ~~~~~~~~~~lr~~~y~~mg~~~~~p~~~~l~~ 209 (287)
|... +-....-+..|+.||+++.+|-+-.+.+
T Consensus 135 PFMs-~lpp~fL~afFvG~GLSaLlPsllaLaQ 166 (439)
T KOG4255|consen 135 PFMS-QLPPAFLNAFFVGMGLSALLPSLLALAQ 166 (439)
T ss_pred hhhh-hCChHHHHHHHHhccHHHHHHHHHHHHc
Confidence 2221 2122334568999999999998766654
No 14
>KOG2329 consensus Alkaline ceramidase [Lipid transport and metabolism]
Probab=47.81 E-value=61 Score=29.73 Aligned_cols=69 Identities=12% Similarity=-0.012 Sum_probs=38.1
Q ss_pred CCchhhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhcccCCchHHHHH
Q 023122 45 PDPHRLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASSTCHLLCCHSERLSYI 124 (287)
Q Consensus 45 ~n~eE~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~yH~~~~~s~~~~~~ 124 (287)
.++.|-.|..|....++++. .........+. +. .+.+-.++.++.=+.|..||.-. +..
T Consensus 30 ~yIAEf~NT~sN~~fil~~~--~~l~~~y~~~~------------e~-~~~l~~v~~~ivgl~S~~fH~TL------~~~ 88 (276)
T KOG2329|consen 30 PYIAEFANTESNSPFILLAF--IGLHCAYRQKL------------EK-RAYLICVLFTIVGLGSMYFHMTL------VYK 88 (276)
T ss_pred HHHHHHHHHhhcchHHHHHH--HHHHHHHHHHh------------hh-hHHHHHHHHHHHHHHHhhhhhhH------HHh
Confidence 46779999999999877643 12121111111 11 11222233344446688999754 355
Q ss_pred HHHhhhhHHH
Q 023122 125 MLRLDYAGIA 134 (287)
Q Consensus 125 ~~~lD~~gI~ 134 (287)
.|-+|-.++.
T Consensus 89 ~QllDElami 98 (276)
T KOG2329|consen 89 GQLLDELAMI 98 (276)
T ss_pred heehhhhhHH
Confidence 6777776643
No 15
>COG4323 Predicted membrane protein [Function unknown]
Probab=42.00 E-value=16 Score=27.53 Aligned_cols=67 Identities=19% Similarity=0.148 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhhhHHHHHHhhcchhhhhhhhccccchhhHHHHHHHHHHHHHHHHHh--ccccccCcccchHHHHHHHHH
Q 023122 119 ERLSYIMLRLDYAGIAALISTSFYPPIYYSFMCYPFLCNLYLGFITVLGIATIVISL--LPVFEKPKFRSFRASLFFGMG 196 (287)
Q Consensus 119 ~~~~~~~~~lD~~gI~llIaGsytp~~~~~~~~~~~~~~~~~~~~~~la~~g~~~~~--~~~~~~~~~~~lr~~~y~~mg 196 (287)
|....+|||+.++|-.+.++.-. ...+ .+.|.|...+- ++|-.+.. .-.|.++|+..++--+|..||
T Consensus 22 EH~N~vcRRLH~vGs~LvlvcL~----~~Vf--~~~w~wllAap-----v~GYgFAWvGHFvFEKNRPATFkyPvySlMG 90 (105)
T COG4323 22 EHANPVCRRLHVVGSSLVLVCLV----LGVF--RGDWRWLLAAP-----VIGYGFAWVGHFVFEKNRPATFKYPVYSLMG 90 (105)
T ss_pred hccchhHhhhhhhhhHHHHHHHH----HHHH--hcchHHHHHhh-----hhcccceeeeeeeeecCCCccccccHHHhhc
Confidence 56678999999999877765322 2222 44555433222 22221111 223444555567888899998
No 16
>PF14145 YrhK: YrhK-like protein
Probab=33.39 E-value=1.6e+02 Score=20.32 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=32.9
Q ss_pred hhhHHHHHhhhHHHHHHHhHhhhheeccccccccccccccchhHHHHHHHHHHHHHHHHHhh
Q 023122 49 RLMDVLKIKMSWPSMDFLTSLSACLKDDVVNKLAPITVQAITRWPIFTFLGGAMFCLLASST 110 (287)
Q Consensus 49 E~~N~~TH~~g~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~iy~~~~~~~~~~St~ 110 (287)
|.+|...=.+|.+++.+++..+.. +.....+.+.|.++++.+..-+++
T Consensus 5 e~~~~~~d~~~~~~FliGSilfl~--------------~~~~~~g~wlFiiGS~~f~i~~~i 52 (59)
T PF14145_consen 5 EIISTVNDFIGGLLFLIGSILFLP--------------ESLYTAGTWLFIIGSILFLIRPII 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 888998888888888755544431 123457888888888776655543
No 17
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=29.12 E-value=2.5e+02 Score=22.06 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCccCCCCcccCCCC
Q 023122 222 YEILMGLFYGFGALIYAMRVPERWKPGKFDIAGH 255 (287)
Q Consensus 222 ~l~~gg~~y~~G~~fy~~~~PEr~~PG~FD~~G~ 255 (287)
+-.-|| .|.+..+..... -|+..|.+.|+.|.
T Consensus 60 YAAYGG-vfI~~Sl~W~w~-vdg~~Pd~~D~iGa 91 (107)
T PF02694_consen 60 YAAYGG-VFIVASLLWGWL-VDGVRPDRWDWIGA 91 (107)
T ss_pred HHHhhh-hHHHHHHHHHhh-hcCcCCChHHHHhH
Confidence 333444 444444444433 34566777777773
No 18
>PF04713 Pox_I5: Poxvirus protein I5; InterPro: IPR006803 This entry represents the Poxvirus protein I5.
Probab=26.83 E-value=99 Score=22.79 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.6
Q ss_pred chHHHHHHHHhhhhHHHHHHhhcch
Q 023122 118 SERLSYIMLRLDYAGIAALISTSFY 142 (287)
Q Consensus 118 s~~~~~~~~~lD~~gI~llIaGsyt 142 (287)
|....++...+||.++.+.|=||-.
T Consensus 42 S~~~~rVl~~le~vailifIPGTIi 66 (77)
T PF04713_consen 42 SATFNRVLTFLEYVAILIFIPGTII 66 (77)
T ss_pred hhhhHHHHHHHHHHHHHhhcccHHH
Confidence 5678899999999999998887755
No 19
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=25.44 E-value=3.4e+02 Score=27.85 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHhhhhHHHHHHhhcch
Q 023122 121 LSYIMLRLDYAGIAALISTSFY 142 (287)
Q Consensus 121 ~~~~~~~lD~~gI~llIaGsyt 142 (287)
.++.++++|+.|++++++|-..
T Consensus 232 ~~~~l~~lD~IG~~L~~~Gl~L 253 (599)
T PF06609_consen 232 KREQLKELDWIGIFLFIAGLAL 253 (599)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 4678999999999999998643
No 20
>PRK02237 hypothetical protein; Provisional
Probab=25.16 E-value=3.4e+02 Score=21.37 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhcCCccCCCCcccCCC
Q 023122 229 FYGFGALIYAMRVPERWKPGKFDIAG 254 (287)
Q Consensus 229 ~y~~G~~fy~~~~PEr~~PG~FD~~G 254 (287)
.|.+..+..... -|+..|.+.|..|
T Consensus 68 vyI~~Sl~W~w~-vdg~~Pd~~D~iG 92 (109)
T PRK02237 68 VYVAGSLLWLWV-VDGVRPDRWDWIG 92 (109)
T ss_pred HHHHHHHHHHHH-hcCcCCChhHHHh
Confidence 333344343332 2345566666666
No 21
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=22.87 E-value=3.7e+02 Score=24.63 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCccCCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 023122 220 TGYEILMGLFYGFGALIYAMRVPERWKPGKFDIAGHSHQLFHVLVVAGAYTHYLDGLVY 278 (287)
Q Consensus 220 l~~l~~gg~~y~~G~~fy~~~~PEr~~PG~FD~~G~sHqiwHlfV~~g~~~h~~ai~~~ 278 (287)
..|+..+-+.+.+-+++...+. |.++||.+|+--. ..+....|.-+--.++...
T Consensus 30 i~Wl~l~nl~~~INaiIW~~n~-~~~~~~wCDI~~k----l~~~~~~g~~~a~lcI~r~ 83 (283)
T PF02076_consen 30 IFWLFLSNLIYFINAIIWRDND-INWWPVWCDISTK----LIIGSSVGIPAASLCIMRR 83 (283)
T ss_pred HHHHHHHHHHHHHhhhhcCCCC-CccCceeeeehHH----HHHHHHHHHHHHHHHHHHH
Confidence 4466667788888888888777 6777999997533 3333444444444444433
No 22
>COG5500 Predicted integral membrane protein [Function unknown]
Probab=21.92 E-value=84 Score=25.54 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 023122 188 RASLFFGMGISGVAPVLHKLILFRDKPEAVQTTGYEILMGLFYGFGALI 236 (287)
Q Consensus 188 r~~~y~~mg~~~~~p~~~~l~~~~~~~~~~~~l~~l~~gg~~y~~G~~f 236 (287)
-...|...|..+++-++..++ |+. .++-.|+++|++.|.+|...
T Consensus 58 FmtAf~GTgllcliLl~~a~~--gW~---~pgsy~Llag~l~YlvGt~~ 101 (159)
T COG5500 58 FMTAFLGTGLLCLILLISALL--GWH---QPGSYYLLAGSLLYLVGTFG 101 (159)
T ss_pred HHHHHHhhhHHHHHHHHHHHh--ccC---CCCchhhhhhhhhheecCce
Confidence 344566677777666655554 332 34567889999999999654
No 23
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=21.52 E-value=2.6e+02 Score=21.07 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=22.6
Q ss_pred chHHHHHHHHhhhhHHHHHHhhcchhhh
Q 023122 118 SERLSYIMLRLDYAGIAALISTSFYPPI 145 (287)
Q Consensus 118 s~~~~~~~~~lD~~gI~llIaGsytp~~ 145 (287)
+.+.++..+++.-..|.+...|+.+|.+
T Consensus 11 a~~~q~~~~~~~~~~i~~~~~~a~i~~l 38 (112)
T PF14015_consen 11 ARRAQRRYRRLRIASIILSVLGAVIPVL 38 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999988899989863
Done!