Query 023122
Match_columns 287
No_of_seqs 231 out of 1366
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 16:44:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gh9_A Polymerase cofactor VP3 15.8 53 0.0018 25.4 1.2 21 4-24 95-115 (146)
2 3fke_A Polymerase cofactor VP3 9.0 1E+02 0.0035 23.4 0.9 21 4-24 78-98 (129)
3 3arc_T Photosystem II reaction 8.2 2.7E+02 0.0093 16.1 2.3 15 229-243 11-25 (32)
4 2ltd_A Uncharacterized protein 6.6 1.6E+02 0.0055 20.8 0.0 17 6-24 35-51 (80)
5 4g06_A Uncharacterized protein 4.1 1.9E+02 0.0065 20.4 0.0 17 6-24 42-58 (79)
6 3pm7_A Uncharacterized protein 4.1 1.9E+02 0.0066 20.4 0.0 17 6-24 35-51 (80)
7 2l3a_A Uncharacterized protein 3.9 1.7E+02 0.0059 20.8 -0.4 17 6-24 37-53 (82)
8 2kwv_A RAD30 homolog B, DNA po 3.7 1.9E+02 0.0065 18.3 -0.3 19 6-24 12-30 (48)
9 1hgv_A PH75 inovirus major coa 2.9 1E+03 0.035 14.3 2.6 18 46-63 4-21 (46)
10 1p4q_A CBP/P300-interacting tr 2.8 3.3E+02 0.011 17.3 0.2 12 11-22 29-40 (52)
No 1
>4gh9_A Polymerase cofactor VP35; viral polymerase, interferon inhibition, double stranded VIR viral protein,RNA binding protein; 1.65A {Marburg virus}
Probab=15.79 E-value=53 Score=25.40 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=18.0
Q ss_pred cCCCCcccccchhhhcccCCC
Q 023122 4 SMSGPVVHLDSLQRFRDMLPV 24 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (287)
..+||++++++.+.+|+--|+
T Consensus 95 da~PpvihirsrgdiPraCQK 115 (146)
T 4gh9_A 95 GVVPPVIRVKNFQTVPRPCQK 115 (146)
T ss_dssp TCCCCEEECSSGGGSCGGGGG
T ss_pred cCCCCeEEeeccCCCChHHHh
Confidence 568999999999999986555
No 2
>3fke_A Polymerase cofactor VP35; RNA binding domain, coiled coil, interferon antiviral system evasion, RNA replication, RNA-binding; 1.40A {Zaire ebolavirus - mayinga} PDB: 3l25_A 3l26_A 3l28_A 3l27_A 3l29_A 3l2a_A
Probab=8.98 E-value=1e+02 Score=23.40 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=17.6
Q ss_pred cCCCCcccccchhhhcccCCC
Q 023122 4 SMSGPVVHLDSLQRFRDMLPV 24 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (287)
.-+||+++++|.|++|+--|+
T Consensus 78 ~~~pP~i~v~s~~~IP~acqk 98 (129)
T 3fke_A 78 DAAPPVIHIRSRGDIPRACQK 98 (129)
T ss_dssp TCCCCEEEESSGGGSCGGGGG
T ss_pred CCCCCeEEeeccccCChHHhh
Confidence 457999999999999986554
No 3
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=8.15 E-value=2.7e+02 Score=16.12 Aligned_cols=15 Identities=13% Similarity=0.126 Sum_probs=9.9
Q ss_pred HHHHHHHHhhhcCCc
Q 023122 229 FYGFGALIYAMRVPE 243 (287)
Q Consensus 229 ~y~~G~~fy~~~~PE 243 (287)
.-++|++|++.-+.|
T Consensus 11 ~~tlgiiFFAI~FRe 25 (32)
T 3arc_T 11 ACIIALFFFAIFFRE 25 (32)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhhhhcC
Confidence 456788888765544
No 4
>2ltd_A Uncharacterized protein YDBC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Lactococcus lactis subsp}
Probab=6.59 E-value=1.6e+02 Score=20.78 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=12.4
Q ss_pred CCCcccccchhhhcccCCC
Q 023122 6 SGPVVHLDSLQRFRDMLPV 24 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (287)
-+|..|||+|+ ||+-+-
T Consensus 35 ~~pKyDIR~Ws--pdh~kM 51 (80)
T 2ltd_A 35 AEPKYDIRTWS--PDHEKM 51 (80)
Confidence 36889999997 666544
No 5
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=4.14 E-value=1.9e+02 Score=20.39 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=12.2
Q ss_pred CCCcccccchhhhcccCCC
Q 023122 6 SGPVVHLDSLQRFRDMLPV 24 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (287)
-+|..|||+|+ ||+-+-
T Consensus 42 ~~pKyDIR~W~--pdh~kM 58 (79)
T 4g06_A 42 APAKFDIRAWS--PDHTKM 58 (79)
T ss_dssp CCCEEEEEEEC--TTSSCB
T ss_pred CCCCccccccC--cccccc
Confidence 37889999998 465443
No 6
>3pm7_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.00A {Enterococcus faecalis}
Probab=4.09 E-value=1.9e+02 Score=20.39 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=11.8
Q ss_pred CCCcccccchhhhcccCCC
Q 023122 6 SGPVVHLDSLQRFRDMLPV 24 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (287)
-+|..|||+|+ ||+-+-
T Consensus 35 ~~pKyDIR~W~--pdh~kM 51 (80)
T 3pm7_A 35 RPPKFDLREWA--PDHEKM 51 (80)
T ss_dssp CCCEEEEEEEC--TTSSSE
T ss_pred CCCCccccccC--cchhhc
Confidence 36889999997 455443
No 7
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=3.86 E-value=1.7e+02 Score=20.75 Aligned_cols=17 Identities=6% Similarity=0.079 Sum_probs=12.3
Q ss_pred CCCcccccchhhhcccCCC
Q 023122 6 SGPVVHLDSLQRFRDMLPV 24 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (287)
-+|..|||+|+ ||+-+-
T Consensus 37 ~~pKyDIR~Ws--pdh~kM 53 (82)
T 2l3a_A 37 APAKFDIRAWS--PDHTKM 53 (82)
T ss_dssp SCEEEEEEEEC--STTCCC
T ss_pred CCCCccccccC--cchhhc
Confidence 36788999997 666544
No 8
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=3.67 E-value=1.9e+02 Score=18.29 Aligned_cols=19 Identities=5% Similarity=0.001 Sum_probs=14.8
Q ss_pred CCCcccccchhhhcccCCC
Q 023122 6 SGPVVHLDSLQRFRDMLPV 24 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (287)
-|+-||-.=|+++|.-.|+
T Consensus 12 lP~~VD~eVF~~LP~dIQ~ 30 (48)
T 2kwv_A 12 LPEGVDQEVFKQLPADIQE 30 (48)
T ss_dssp SCTTCCGGGTTTSCHHHHH
T ss_pred CCCCCCHHHHHHCcHHHHH
Confidence 4677888888899877766
No 9
>1hgv_A PH75 inovirus major coat protein; virus coat protein, helical virus coat protein, ssDNA viruses, filamentous bacteriophage, thermophiles; 2.4A {Bacteriophage PH75} SCOP: h.1.4.1 PDB: 1hgz_A 1hh0_A
Probab=2.88 E-value=1e+03 Score=14.31 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=14.3
Q ss_pred CchhhhHHHHHhhhHHHH
Q 023122 46 DPHRLMDVLKIKMSWPSM 63 (287)
Q Consensus 46 n~eE~~N~~TH~~g~~~~ 63 (287)
|..|++...+.-++.+.+
T Consensus 4 npseia~~v~~yi~~iaa 21 (46)
T 1hgv_A 4 NPSEVASQVTNYIQAIAA 21 (46)
T ss_dssp CTHHHHHHHHTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 557899999999887755
No 10
>1p4q_A CBP/P300-interacting transactivator 2; helix, protein-protein complex, transcription/transferase complex; NMR {Homo sapiens} SCOP: j.96.1.1
Probab=2.79 E-value=3.3e+02 Score=17.32 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=8.6
Q ss_pred cccchhhhcccC
Q 023122 11 HLDSLQRFRDML 22 (287)
Q Consensus 11 ~~~~~~~~~~~~ 22 (287)
-|||.||+|+-.
T Consensus 29 GLdRv~ELPEL~ 40 (52)
T 1p4q_A 29 GLDRIKELPELW 40 (52)
T ss_dssp TSSSCSSCCCCC
T ss_pred hhHHHHHhHHHH
Confidence 367888888754
Done!