Query 023122
Match_columns 287
No_of_seqs 231 out of 1366
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 16:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023122.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023122hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.7 32 0.0024 17.5 2.3 16 224-239 2-17 (27)
2 d1ik7a_ a.77.1.2 (A:) Pelle de 16.8 38 0.0028 20.4 2.2 27 252-278 12-40 (52)
3 d1tdja2 d.58.18.2 (A:336-423) 14.3 17 0.0012 24.6 -0.1 13 236-250 5-17 (88)
4 d1tdja3 d.58.18.2 (A:424-514) 8.5 27 0.002 23.7 -0.7 12 236-249 12-23 (91)
5 d2pf1a2 g.32.1.1 (A:36-65) Pro 5.4 1.1E+02 0.0078 15.9 0.9 15 25-39 14-28 (30)
6 d1bu2a2 a.74.1.1 (A:149-250) V 5.3 36 0.0026 22.6 -1.4 12 236-247 12-23 (102)
7 d1t1ra3 c.2.1.3 (A:275-300) 1- 3.9 1.9E+02 0.014 14.6 1.3 13 236-248 6-18 (26)
8 d1oj5a_ d.110.3.8 (A:) PAS dom 3.7 65 0.0048 21.5 -1.1 41 1-46 6-46 (109)
9 d1eg3a2 a.39.1.7 (A:210-306) D 3.7 1.2E+02 0.0085 20.6 0.3 28 12-39 29-59 (97)
10 d2ak3a2 g.41.2.1 (A:125-161) M 3.6 1.1E+02 0.0084 16.8 0.2 21 233-254 9-29 (37)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.68 E-value=32 Score=17.47 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 023122 224 ILMGLFYGFGALIYAM 239 (287)
Q Consensus 224 ~~gg~~y~~G~~fy~~ 239 (287)
++|.++-++|..||+.
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4566777888888875
No 2
>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=16.83 E-value=38 Score=20.42 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=22.6
Q ss_pred CCCC--chHHHHHHHHHHHHHHHHHHHHH
Q 023122 252 IAGH--SHQLFHVLVVAGAYTHYLDGLVY 278 (287)
Q Consensus 252 ~~G~--sHqiwHlfV~~g~~~h~~ai~~~ 278 (287)
.||+ +|.|--+|+++.-.-|+.|+...
T Consensus 12 ~Wg~q~NHTi~eLF~ll~~mk~~~aM~ii 40 (52)
T d1ik7a_ 12 IWGGQYNHTVQTLFALFKKLKLHNAMRLI 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4544 89999999999999999998743
No 3
>d1tdja2 d.58.18.2 (A:336-423) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.34 E-value=17 Score=24.61 Aligned_cols=13 Identities=38% Similarity=0.881 Sum_probs=9.9
Q ss_pred HhhhcCCccCCCCcc
Q 023122 236 IYAMRVPERWKPGKF 250 (287)
Q Consensus 236 fy~~~~PEr~~PG~F 250 (287)
+|+..+||| ||.|
T Consensus 5 l~~v~iPEr--pGaf 17 (88)
T d1tdja2 5 LLAVTIPEE--KGSF 17 (88)
T ss_dssp EEEEECCBS--SSCS
T ss_pred EEEEEcCCC--ccHH
Confidence 456789998 9964
No 4
>d1tdja3 d.58.18.2 (A:424-514) Allosteric threonine deaminase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.50 E-value=27 Score=23.66 Aligned_cols=12 Identities=42% Similarity=1.071 Sum_probs=9.2
Q ss_pred HhhhcCCccCCCCc
Q 023122 236 IYAMRVPERWKPGK 249 (287)
Q Consensus 236 fy~~~~PEr~~PG~ 249 (287)
+|...+||| ||.
T Consensus 12 l~~v~iPEr--pGa 23 (91)
T d1tdja3 12 LYSFEFPES--PGA 23 (91)
T ss_dssp EEEEECCCC--TTH
T ss_pred EEEEECCCC--ccH
Confidence 466789998 884
No 5
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.43 E-value=1.1e+02 Score=15.87 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.4
Q ss_pred CccccchHhHHhhcC
Q 023122 25 ADWHKIQEQLLSCFP 39 (287)
Q Consensus 25 ~~~~~~~~s~~~c~~ 39 (287)
.+-|+|+..+.+|+.
T Consensus 14 es~r~prekl~~cle 28 (30)
T d2pf1a2 14 ESARNPREKLNECLE 28 (30)
T ss_dssp STTCSSHHHHHHHHS
T ss_pred HHhcCcHHHHHHHhc
Confidence 467899999999974
No 6
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=5.29 E-value=36 Score=22.56 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=9.7
Q ss_pred HhhhcCCccCCC
Q 023122 236 IYAMRVPERWKP 247 (287)
Q Consensus 236 fy~~~~PEr~~P 247 (287)
-.+.|+||.++|
T Consensus 12 c~alkipe~~wp 23 (102)
T d1bu2a2 12 CNALKIPEDLWP 23 (102)
T ss_dssp HHHTTCCTTSHH
T ss_pred hhhccCcHHHhH
Confidence 357899999887
No 7
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}
Probab=3.93 E-value=1.9e+02 Score=14.61 Aligned_cols=13 Identities=31% Similarity=0.440 Sum_probs=9.2
Q ss_pred HhhhcCCccCCCC
Q 023122 236 IYAMRVPERWKPG 248 (287)
Q Consensus 236 fy~~~~PEr~~PG 248 (287)
-|+.-+|||..-|
T Consensus 6 A~aLa~PeRi~sg 18 (26)
T d1t1ra3 6 AHTMAWPNRVNSG 18 (26)
T ss_dssp HHHHHTTSCCCCC
T ss_pred hhhccCccccccC
Confidence 3566789998655
No 8
>d1oj5a_ d.110.3.8 (A:) PAS domain of steroid receptor coactivator 1A, NCo-A1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.73 E-value=65 Score=21.53 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=28.0
Q ss_pred CcccCCCCcccccchhhhcccCCCCccccchHhHHhhcCCCCCCCC
Q 023122 1 MRLSMSGPVVHLDSLQRFRDMLPVADWHKIQEQLLSCFPSMPNIPD 46 (287)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~c~~slf~~~n 46 (287)
+|.+++++.+.++ |...+..+|..+..=...++..++.+.+
T Consensus 6 trh~~~g~~~~vd-----~~~~~~~gy~~~eelig~s~~~f~HPeD 46 (109)
T d1oj5a_ 6 TKQDTTGKIISID-----TSSLRAAGRTGWEDLVRKCIYAFFQPQG 46 (109)
T ss_dssp EEECTTCCEEEEE-----CHHHHTTCCSCHHHHHHHHHHHHTSCBT
T ss_pred EEECCCceEEEEC-----HHHhhHhhcCCHHHHcCCcHHHeECccc
Confidence 3788999999988 5555556666555556666777775554
No 9
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.66 E-value=1.2e+02 Score=20.58 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=22.0
Q ss_pred ccchhhhcccCCCC---ccccchHhHHhhcC
Q 023122 12 LDSLQRFRDMLPVA---DWHKIQEQLLSCFP 39 (287)
Q Consensus 12 ~~~~~~~~~~~~~~---~~~~~~~s~~~c~~ 39 (287)
||...|+|+.+-|. ||.-...+.++|++
T Consensus 29 L~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~ 59 (97)
T d1eg3a2 29 LHDSIQIPRQLGEVASFGGSNIEPSVRSCFQ 59 (97)
T ss_dssp HHHHHHHHHHTTCGGGGTCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCCCcchHHHHHHHh
Confidence 56778999999994 55556889999984
No 10
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=3.63 E-value=1.1e+02 Score=16.75 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHhhhcCCccCCCCcccCCC
Q 023122 233 GALIYAMRVPERWKPGKFDIAG 254 (287)
Q Consensus 233 G~~fy~~~~PEr~~PG~FD~~G 254 (287)
|.+....-.|.+- +|++|..|
T Consensus 9 G~~Yh~~~~pPk~-~g~CD~cg 29 (37)
T d2ak3a2 9 GRVYNIEFNPPKT-MGIDDLTG 29 (37)
T ss_dssp TEEEETTTBCCSS-TTBCTTTC
T ss_pred CChhhhccCCccc-cCCccCCC
Done!