Query 023124
Match_columns 287
No_of_seqs 100 out of 126
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:46:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023124.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023124hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qyh_A CO-type nitrIle hydrata 69.9 3.3 0.00011 37.6 3.5 43 145-187 48-96 (226)
2 3hht_A NitrIle hydratase alpha 59.8 7.3 0.00025 35.2 3.8 43 145-187 37-85 (216)
3 3u6r_H Antibody 1:7 (heavy cha 53.9 2.9 9.8E-05 33.9 0.2 14 57-70 81-94 (149)
4 1p4b_L Antibody variable light 52.8 2.9 9.9E-05 32.9 0.0 11 58-68 78-88 (135)
5 1ugp_A NitrIle hydratase alpha 45.1 24 0.00082 31.6 4.6 44 145-188 28-77 (203)
6 3a8g_A NitrIle hydratase subun 44.7 17 0.00059 32.6 3.7 43 145-187 31-79 (207)
7 1p4b_L Antibody variable light 42.3 5.3 0.00018 31.3 0.0 6 46-51 93-98 (135)
8 4fm4_A NitrIle hydratase alpha 40.8 13 0.00043 33.5 2.2 43 145-187 21-69 (209)
9 2zzd_C Thiocyanate hydrolase s 40.0 14 0.00049 33.8 2.4 43 145-187 39-86 (243)
10 3p8c_D Wiskott-aldrich syndrom 33.0 10 0.00035 35.2 0.3 6 140-145 220-225 (279)
11 3pgw_S U1-70K; protein-RNA com 32.7 23 0.00077 33.6 2.7 15 28-42 146-160 (437)
12 1g3p_A G3P, minor coat protein 28.0 11 0.00036 33.6 -0.5 6 77-82 64-69 (217)
13 4dpv_Z Protein (parvovirus coa 23.8 20 0.00068 36.3 0.5 18 90-107 22-39 (584)
14 3u5c_J 40S ribosomal protein S 22.8 14 0.00047 32.7 -0.7 11 34-44 115-125 (197)
15 3pgz_A Single-stranded DNA-bin 20.6 21 0.00072 31.2 0.0 12 56-67 95-106 (193)
No 1
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=69.87 E-value=3.3 Score=37.62 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=32.3
Q ss_pred HHHcCCCHHHHHHHHh-hcC--Ccch-hHHHHHHh--hhhhhhhhcCcc
Q 023124 145 AKTVGIRKMFLLRYLD-LQG--SVWP-LGFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~-L~~--sp~~-l~~L~r~~--~g~r~RlLADP~ 187 (287)
++.|.|+++.+.++++ ++. +|.. .+-+.|+| +.||.|||+||.
T Consensus 48 ~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~ 96 (226)
T 3qyh_A 48 IEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGT 96 (226)
T ss_dssp HHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHH
Confidence 5679999999999998 433 3321 25566667 999999999995
No 2
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=59.80 E-value=7.3 Score=35.16 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=31.9
Q ss_pred HHHcCCCHHHHHHHHhh-cC--Ccch-hHHHHHHh--hhhhhhhhcCcc
Q 023124 145 AKTVGIRKMFLLRYLDL-QG--SVWP-LGFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~L-~~--sp~~-l~~L~r~~--~g~r~RlLADP~ 187 (287)
++.|.|+++.+.++++. +. +|.. .+-+.|++ +.||.|||+||.
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~ 85 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSE 85 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 45699999999999986 33 3421 24556666 999999999995
No 3
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=53.88 E-value=2.9 Score=33.91 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=7.2
Q ss_pred CceeeecCCccccc
Q 023124 57 PKTIEIPGKITEES 70 (287)
Q Consensus 57 p~~iei~g~it~ts 70 (287)
-+++.|++--.+++
T Consensus 81 ~~sL~I~~lq~~Ds 94 (149)
T 3u6r_H 81 TAYMELSSLRSEDT 94 (149)
T ss_dssp EEEEEECSCCGGGC
T ss_pred EEEEEECCCChhhC
Confidence 45666665444433
No 4
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=52.83 E-value=2.9 Score=32.87 Aligned_cols=11 Identities=36% Similarity=0.528 Sum_probs=5.0
Q ss_pred ceeeecCCccc
Q 023124 58 KTIEIPGKITE 68 (287)
Q Consensus 58 ~~iei~g~it~ 68 (287)
+++.|.+--.+
T Consensus 78 ~sL~I~~v~~~ 88 (135)
T 1p4b_L 78 AALTITGAQTE 88 (135)
T ss_dssp EEEEEESCCGG
T ss_pred EEEEECCCChh
Confidence 44555544333
No 5
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=45.15 E-value=24 Score=31.57 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=31.6
Q ss_pred HHHcCCCHHHHHHHHhhc-CCcch---hHHHHHHh--hhhhhhhhcCcch
Q 023124 145 AKTVGIRKMFLLRYLDLQ-GSVWP---LGFLMRYC--FMLRDRMLADPSF 188 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~L~-~sp~~---l~~L~r~~--~g~r~RlLADP~F 188 (287)
++.|.|+++.+.++.+.- ..-.| .+-+.|++ +.||.|||+|+.=
T Consensus 28 ~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~a 77 (203)
T 1ugp_A 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTE 77 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHH
Confidence 445999999999988853 33122 24556666 9999999999953
No 6
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=44.66 E-value=17 Score=32.57 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=29.3
Q ss_pred HHHcCCCHHHHHHHHhhc-CC--cc-hhHHHHHHh--hhhhhhhhcCcc
Q 023124 145 AKTVGIRKMFLLRYLDLQ-GS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~L~-~s--p~-~l~~L~r~~--~g~r~RlLADP~ 187 (287)
++.|.|+++.+.++.+.- .. |. =.+-+.|++ +.||.|||+|+.
T Consensus 31 ~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~ 79 (207)
T 3a8g_A 31 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 79 (207)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHH
Confidence 345788888777777743 22 21 124556777 899999999994
No 7
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Probab=42.32 E-value=5.3 Score=31.33 Aligned_cols=6 Identities=17% Similarity=0.058 Sum_probs=2.9
Q ss_pred ccccCC
Q 023124 46 LQCVGN 51 (287)
Q Consensus 46 ~~c~~~ 51 (287)
-.|.-.
T Consensus 93 Y~C~~~ 98 (135)
T 1p4b_L 93 YFCALW 98 (135)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 456533
No 8
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=40.79 E-value=13 Score=33.49 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=31.2
Q ss_pred HHHcCCCHHHHHHHHh-hcCC--cch-hHHHHHHh--hhhhhhhhcCcc
Q 023124 145 AKTVGIRKMFLLRYLD-LQGS--VWP-LGFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~-L~~s--p~~-l~~L~r~~--~g~r~RlLADP~ 187 (287)
.+.|.|.++.+.+|.+ ++.. |.. .+-+.|++ +.||.|||+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 3559999999998888 3432 211 25666777 999999999993
No 9
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=39.97 E-value=14 Score=33.78 Aligned_cols=43 Identities=7% Similarity=-0.075 Sum_probs=31.1
Q ss_pred HHHcCCCHHHHHHHHhh-cCC-cch-hHHHHHHh--hhhhhhhhcCcc
Q 023124 145 AKTVGIRKMFLLRYLDL-QGS-VWP-LGFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~L-~~s-p~~-l~~L~r~~--~g~r~RlLADP~ 187 (287)
++.|.|+++.+.++++. +.. |.. .+-+.|+| +.||.|||+|..
T Consensus 39 ~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~ 86 (243)
T 2zzd_C 39 IEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGV 86 (243)
T ss_dssp HHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChH
Confidence 56688999988888875 322 311 25566777 999999999984
No 10
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=32.99 E-value=10 Score=35.21 Aligned_cols=6 Identities=33% Similarity=0.440 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023124 140 DMMEAA 145 (287)
Q Consensus 140 Dl~~Aa 145 (287)
||.+|+
T Consensus 220 ~Ll~ai 225 (279)
T 3p8c_D 220 VLLEAI 225 (279)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333443
No 11
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=32.69 E-value=23 Score=33.64 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=7.6
Q ss_pred eeeEeecccCCCCcc
Q 023124 28 TVFLSLRHSTATNPA 42 (287)
Q Consensus 28 ~~~~~~~~s~~~~~~ 42 (287)
..|++|.+-..-..+
T Consensus 146 ~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 146 YAFIEYEHERDMHSA 160 (437)
T ss_pred eEEEeeccHHHHHHH
Confidence 356666554433333
No 12
>1g3p_A G3P, minor coat protein; filamentous bacteriophage, phage display, selectively infective phages, viral protein; HET: TRO; 1.46A {Enterobacteria phage M13} SCOP: b.37.1.1 b.37.1.1 PDB: 2g3p_A 3dgs_A 3knq_A 1fgp_A
Probab=27.98 E-value=11 Score=33.61 Aligned_cols=6 Identities=33% Similarity=0.545 Sum_probs=1.1
Q ss_pred cccCCC
Q 023124 77 IHSSGG 82 (287)
Q Consensus 77 ~~~~~G 82 (287)
+++.+|
T Consensus 64 ~Ps~~G 69 (217)
T 1g3p_A 64 IPENEG 69 (217)
T ss_dssp CCC---
T ss_pred cccCCC
Confidence 333333
No 13
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=23.84 E-value=20 Score=36.35 Aligned_cols=18 Identities=56% Similarity=1.177 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 023124 90 PGGGGGGGGDSGGGGGDG 107 (287)
Q Consensus 90 ~~~ggg~~g~gggg~g~g 107 (287)
.+|||.+|+|||||||-|
T Consensus 22 ~~g~G~~g~gg~G~gGVG 39 (584)
T 4dpv_Z 22 GSGNGSGGGGGGGSGGVG 39 (584)
T ss_dssp CCCCCCCCCCEETTEETT
T ss_pred ccCCCCCCCCCCCCCCcc
No 14
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Probab=22.76 E-value=14 Score=32.68 Aligned_cols=11 Identities=9% Similarity=-0.019 Sum_probs=6.1
Q ss_pred cccCCCCcccc
Q 023124 34 RHSTATNPALC 44 (287)
Q Consensus 34 ~~s~~~~~~~~ 44 (287)
+.+.+.++..|
T Consensus 115 r~G~a~Sr~~A 125 (197)
T 3u5c_J 115 KLGLAKSVHHA 125 (197)
T ss_dssp HSSTTSSHHHH
T ss_pred HccccCCHHHH
Confidence 45556555554
No 15
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=20.65 E-value=21 Score=31.22 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=6.5
Q ss_pred CCceeeecCCcc
Q 023124 56 TPKTIEIPGKIT 67 (287)
Q Consensus 56 ~p~~iei~g~it 67 (287)
+.-.|.|+|++.
T Consensus 95 KGs~V~VeGrL~ 106 (193)
T 3pgz_A 95 KGSKIYIEGQLQ 106 (193)
T ss_dssp TTCEEEEEEEEE
T ss_pred CCCEEEEEEEEE
Confidence 444555666554
Done!