Query 023124
Match_columns 287
No_of_seqs 100 out of 126
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:46:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023124.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023124hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ugpa_ d.149.1.1 (A:) Cobalt- 72.7 1.2 8.4E-05 37.9 3.3 43 145-187 28-76 (203)
2 d1v29a_ d.149.1.1 (A:) Cobalt- 70.3 1.6 0.00012 36.9 3.7 43 145-187 27-75 (203)
3 d2qdya1 d.149.1.1 (A:10-206) I 53.0 6.1 0.00044 33.1 4.2 42 146-187 23-70 (197)
4 d1x3zb1 a.189.1.1 (B:253-309) 42.7 4.9 0.00036 27.5 1.6 28 168-195 28-55 (57)
5 d1b0na1 a.34.1.1 (A:74-108) Si 31.3 12 0.00085 23.5 1.9 21 142-163 10-30 (35)
6 d2fbqa2 a.121.1.1 (A:81-214) T 22.1 81 0.0059 23.0 5.7 54 153-210 12-67 (134)
7 d1lnza1 b.117.1.1 (A:1-157) Ob 19.4 37 0.0027 26.5 3.3 7 81-87 12-18 (157)
8 d1or7a1 a.4.13.2 (A:120-187) S 17.7 55 0.004 21.0 3.4 62 120-182 2-66 (68)
9 d1udxa1 b.117.1.1 (A:1-156) Ob 16.9 43 0.0031 26.1 3.1 8 80-87 11-18 (156)
10 d1q5za_ a.196.1.1 (A:) Invasio 14.0 73 0.0053 24.9 3.7 65 170-234 50-141 (145)
No 1
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=72.69 E-value=1.2 Score=37.90 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHcCCCHHHHHHHHhh-cCC--cch-hHHHHHHh--hhhhhhhhcCcc
Q 023124 145 AKTVGIRKMFLLRYLDL-QGS--VWP-LGFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~L-~~s--p~~-l~~L~r~~--~g~r~RlLADP~ 187 (287)
++.|.|+++.+.++++. +.. |.. .+-+.|+| +.||.|||+|+.
T Consensus 28 ieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~ 76 (203)
T d1ugpa_ 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT 76 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 45699999999999994 332 321 25667777 999999999984
No 2
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=70.25 E-value=1.6 Score=36.94 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=32.7
Q ss_pred HHHcCCCHHHHHHHHh-hcCC--cch-hHHHHHHh--hhhhhhhhcCcc
Q 023124 145 AKTVGIRKMFLLRYLD-LQGS--VWP-LGFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 145 a~~g~is~a~L~Rfl~-L~~s--p~~-l~~L~r~~--~g~r~RlLADP~ 187 (287)
++.|.|+++.+.+.++ ++.. |.. .+-+.|++ +.||.|||+|+.
T Consensus 27 ieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~ 75 (203)
T d1v29a_ 27 IEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPE 75 (203)
T ss_dssp HHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHH
Confidence 4569999999999998 4443 321 25667777 999999999984
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=53.01 E-value=6.1 Score=33.14 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=31.5
Q ss_pred HHcCCCHHHHHHHHhh-cCCcchh---HHHHHHh--hhhhhhhhcCcc
Q 023124 146 KTVGIRKMFLLRYLDL-QGSVWPL---GFLMRYC--FMLRDRMLADPS 187 (287)
Q Consensus 146 ~~g~is~a~L~Rfl~L-~~sp~~l---~~L~r~~--~g~r~RlLADP~ 187 (287)
+.|.|+++.+.++++. +..-.|. +-+.|+| +.||.|||+|+.
T Consensus 23 eKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~ 70 (197)
T d2qdya1 23 GKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 70 (197)
T ss_dssp TTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 4599999999998884 5442222 5566777 999999999984
No 4
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.66 E-value=4.9 Score=27.51 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=21.3
Q ss_pred hHHHHHHhhhhhhhhhcCcchhHHHhHH
Q 023124 168 LGFLMRYCFMLRDRMLADPSFLFKVGTE 195 (287)
Q Consensus 168 l~~L~r~~~g~r~RlLADP~FlfKl~~E 195 (287)
+-.|+.+++-+|+.+++||.-...+..|
T Consensus 28 le~ls~ryp~lre~im~npe~fismlle 55 (57)
T d1x3zb1 28 LENISARYPQLREHIMANPEVFVSMLLE 55 (57)
T ss_dssp HHHHHTTCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhCHHHHHHHHHh
Confidence 3455566799999999999866666665
No 5
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=31.26 E-value=12 Score=23.46 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=16.4
Q ss_pred HHHHHHcCCCHHHHHHHHhhcC
Q 023124 142 MEAAKTVGIRKMFLLRYLDLQG 163 (287)
Q Consensus 142 ~~Aa~~g~is~a~L~Rfl~L~~ 163 (287)
++|... +||.+|...||++++
T Consensus 10 keAM~S-GvSK~QFrEflef~k 30 (35)
T d1b0na1 10 RDAMTS-GVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHc-cCCHHHHHHHHHHHH
Confidence 455554 499999999999875
No 6
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.08 E-value=81 Score=23.04 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCCc-chhHHHHHHhhhhhhhhhcCcc-hhHHHhHHhhhhhhhhhhhhhhh
Q 023124 153 MFLLRYLDLQGSV-WPLGFLMRYCFMLRDRMLADPS-FLFKVGTEIVIDSCCATLAEFQK 210 (287)
Q Consensus 153 a~L~Rfl~L~~sp-~~l~~L~r~~~g~r~RlLADP~-FlfKl~~E~~i~i~~~~~~E~~~ 210 (287)
+.+.-+|++..+. .-.++++| +..|.++||+ ++-|+..|..-.+.......+++
T Consensus 12 a~~~p~l~~~~~~~~~~~~f~r----Ll~R~~~ep~~~lr~~~~~~~~p~~~rf~~al~~ 67 (134)
T d2fbqa2 12 LLVSQAMAVKPRSGNDLSIFMR----LLGLAFSQSQGHLRKYLEEVYGKVFRRYMLLVNE 67 (134)
T ss_dssp HHHHHHHHSCCSSSCHHHHHHH----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCchhHHHH----HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678886543 22344444 7789999997 78888888888888877777776
No 7
>d1lnza1 b.117.1.1 (A:1-157) Obg GTP-binding protein N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=19.36 E-value=37 Score=26.46 Aligned_cols=7 Identities=86% Similarity=1.778 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 023124 81 GGDGGAG 87 (287)
Q Consensus 81 ~G~Gg~g 87 (287)
+|.||.|
T Consensus 12 aG~GG~G 18 (157)
T d1lnza1 12 GGDGGNG 18 (157)
T ss_dssp CCCCCCC
T ss_pred ECCCCCc
Confidence 4555544
No 8
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=17.67 E-value=55 Score=21.03 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=42.8
Q ss_pred cccHHHHHHHHHhcCCCchHHHHHHHHH---cCCCHHHHHHHHhhcCCcchhHHHHHHhhhhhhhh
Q 023124 120 ILKFEEVMKEIELKGVGLPDDMMEAAKT---VGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRM 182 (287)
Q Consensus 120 ll~~~~Vl~ea~r~~~sLPaDl~~Aa~~---g~is~a~L~Rfl~L~~sp~~l~~L~r~~~g~r~Rl 182 (287)
++..++..+...+-...||..-++++.+ .+.+-..+-+-+++..+. .-..+.|+..-+|..|
T Consensus 2 ~l~~~e~~~~l~~~l~~Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~t-v~~~l~ra~~~Lr~~l 66 (68)
T d1or7a1 2 LMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGT-VRSRIFRAREAIDNKV 66 (68)
T ss_dssp EEEHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHH-HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCHHHHHHHHCcCHHH-HHHHHHHHHHHHHHHc
Confidence 4456677777788888899999988887 667777777777776643 2355555555555543
No 9
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=16.86 E-value=43 Score=26.11 Aligned_cols=8 Identities=50% Similarity=1.141 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 023124 80 SGGDGGAG 87 (287)
Q Consensus 80 ~~G~Gg~g 87 (287)
.+|+||+|
T Consensus 11 ~~G~GG~G 18 (156)
T d1udxa1 11 AAGRGGDG 18 (156)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 35555554
No 10
>d1q5za_ a.196.1.1 (A:) Invasion protein A (SipA) , C-terminal actin binding domain {Salmonella typhimurium [TaxId: 90371]}
Probab=14.03 E-value=73 Score=24.89 Aligned_cols=65 Identities=25% Similarity=0.167 Sum_probs=37.9
Q ss_pred HHHHHhhhhhhhhhcCcchhHHHhHHhhhhhhh--------hh-------------hhhhhh---c-c--ccchhhHHHH
Q 023124 170 FLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCC--------AT-------------LAEFQK---R-G--KDFWSEFELY 222 (287)
Q Consensus 170 ~L~r~~~g~r~RlLADP~FlfKl~~E~~i~i~~--------~~-------------~~E~~~---R-g--e~f~~ElDfV 222 (287)
..-|.|-++|.|+|-...|=.--...+..+|.- .+ ++|++. | - -+.+.|.|++
T Consensus 50 ~vRRaFd~LRaeILpnD~~ks~alkaqcs~i~~~~eLk~k~~tLke~it~HPqrekLae~Alqf~REAgLt~lk~etdyl 129 (145)
T d1q5za_ 50 PVRRAFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTRLKGETDYV 129 (145)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHCTTTTGGGSCHH
T ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHhccCCChHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCcccCcccHH
Confidence 344677888888887777755444444333211 00 111111 1 1 1456789999
Q ss_pred HHHHHHHHHHHH
Q 023124 223 LADLLVGLVVDI 234 (287)
Q Consensus 223 ~adlv~~~i~nf 234 (287)
+++++-++|-|.
T Consensus 130 ls~~LDgli~d~ 141 (145)
T d1q5za_ 130 LSNVLDGLIGDG 141 (145)
T ss_dssp HHHHHHHHSTTC
T ss_pred HHHHHHHHhccc
Confidence 999999888663
Done!