BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023125
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FI78|HST_ARATH Shikimate O-hydroxycinnamoyltransferase OS=Arabidopsis thaliana
GN=HST PE=2 SV=1
Length = 433
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 2 SLGLSWAHVLGDPFSASAFVSMWAQIMAG---RVPP---KSLHEPEPEPEPEKSETETQT 55
SLG+ H D FS F++ W+ + G +PP ++L P+P E Q
Sbjct: 146 SLGVGMQHHAADGFSGLHFINTWSDMARGLDLTIPPFIDRTLLRARDPPQPAFHHVEYQP 205
Query: 56 RASESVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAAA 115
S + P+ P N + F+ T+ QL + + + G +
Sbjct: 206 APSMKI-----------PLDPSKSGPENTTVS--IFKLTRDQLVALKAKSKEDG--NTVS 250
Query: 116 VSHFEVISATIWKLLAKA 133
S +E+++ +W+ + KA
Sbjct: 251 YSSYEMLAGHVWRSVGKA 268
>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1
OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2
Length = 820
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 209 TFVDMEEADV----YGLKLQGQKPVDVNYSINGVGEQGVVLVLAGPEEDSGRGRDRGSTV 264
TFVD E A + +G+ L GQ P +N ++ GE+ + ++AG E RG V
Sbjct: 92 TFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLE------ARGHNV 145
Query: 265 TVVLPENQLEKLMNELNQEWNLA 287
TV+ P +L + + L ++A
Sbjct: 146 TVIDPVEKLLAVGHYLESTVDIA 168
>sp|P0C6V8|R1AB_BRV1 Replicase polyprotein 1ab OS=Breda virus 1 GN=rep PE=2 SV=1
Length = 6733
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 162 LSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGL 221
L VD+DVSK +VW+LST + D D E ++ +F + A++ V + VY
Sbjct: 1601 LEQVYVDYDVSK-NVWDLSTHLQDDSSDDLELPFNQYYEFKVGRASVVLVQDDFKSVYDF 1659
Query: 222 KLQGQKPVDVNYSIN--------GVGEQGVVLVLAGPEEDS------GRGRDRGSTVTVV 267
L+ ++ VD Y +N G G V+ + GP+ S + + G T +
Sbjct: 1660 -LKSEQGVD--YVVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAIR 1716
Query: 268 LPENQLEK 275
P QL K
Sbjct: 1717 SPGFQLGK 1724
>sp|P0C6F4|R1A_BRV1 Replicase polyprotein 1a OS=Breda virus 1 GN=1a PE=3 SV=1
Length = 4445
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 18/128 (14%)
Query: 162 LSTAEVDFDVSKSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGL 221
L VD+DVSK +VW+LST + D D E ++ +F + A++ V + VY
Sbjct: 1601 LEQVYVDYDVSK-NVWDLSTHLQDDSSDDLELPFNQYYEFKVGRASVVLVQDDFKSVYDF 1659
Query: 222 KLQGQKPVDVNYSIN--------GVGEQGVVLVLAGPEEDS------GRGRDRGSTVTVV 267
L+ ++ VD Y +N G G V+ + GP+ S + + G T +
Sbjct: 1660 -LKSEQGVD--YVVNPANNQLKHGGGIAKVISCMCGPKLTSWSNNYIKQYKKLGVTCAIR 1716
Query: 268 LPENQLEK 275
P QL K
Sbjct: 1717 SPGFQLGK 1724
>sp|Q8GSM7|HST_TOBAC Shikimate O-hydroxycinnamoyltransferase OS=Nicotiana tabacum GN=HST
PE=1 SV=1
Length = 435
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 27/216 (12%)
Query: 1 MSLGLSWAHVLGDPFSASAFVSMWAQIMAG---RVPP---KSLHEPEPEPEPEKSETETQ 54
+SLG+ H D S F++ W+ + G +PP ++L P+P+ E Q
Sbjct: 145 VSLGVGMQHHAADGASGLHFINTWSDMARGLDLTIPPFIDRTLLRARDPPQPQFPHVEYQ 204
Query: 55 TRASESVAGNLYPIKRVDPVGDHWQFPNNCNIKTHTFQFTKKQLDQMASNLRYRGIREAA 114
+ V PI P F+ T+ Q++ + + + G
Sbjct: 205 PPPTLKVTPENTPISEAVP-----------ETSVSIFKLTRDQINTLKAKSKEDG--NTV 251
Query: 115 AVSHFEVISATIWK--LLAKASEDSGPGVVTICRYNGQRENETAS----NDMVLSTAEVD 168
S +E+++ +W+ +A+ + I R + +++ +T +
Sbjct: 252 NYSSYEMLAGHVWRSTCMARGLAHDQETKLYIATDGRSRLRPSLPPGYFGNVIFTTTPIA 311
Query: 169 F--DVSKSDVWELSTLIADKRKDVDEKVLSESSDFI 202
D+ +W ++ + D +D L + D++
Sbjct: 312 VAGDIQSKPIWYAASKLHDALARMDNDYLRSALDYL 347
>sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis
(strain RS) GN=FES1 PE=3 SV=2
Length = 212
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 126 IWKLLAKASEDSGPGVVTI---CRYNGQRENETASNDMV--------LSTAEVDFD--VS 172
+W L +A D+ P + + C + NE A N ++ LS A+ D D V
Sbjct: 97 LWTPLVEALSDAEPQMRKMAAWCIGTAVQNNEMAQNKLLDFKAVPKLLSLAKTDPDTTVR 156
Query: 173 KSDVWELSTLIADKRKDVDEKVLSESSDFIMYGANLTFVDMEEADVYGLKLQ 224
+ ++ LS+ + + + +DE +D++ G + DM+ D KL+
Sbjct: 157 RKAIYALSSAVRNHQPSLDELQKLLPADYVSEGEKMNAADMDRIDAIMNKLK 208
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,134,397
Number of Sequences: 539616
Number of extensions: 4441844
Number of successful extensions: 11580
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 11558
Number of HSP's gapped (non-prelim): 36
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)