Query 023126
Match_columns 287
No_of_seqs 334 out of 3195
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 08:37:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.4E-42 3.1E-47 291.4 9.2 198 50-257 1-225 (240)
2 COG1125 OpuBA ABC-type proline 100.0 7.5E-41 1.6E-45 286.8 10.9 197 51-257 1-225 (309)
3 COG3842 PotA ABC-type spermidi 100.0 4.6E-41 9.9E-46 305.9 8.8 200 48-257 2-226 (352)
4 COG1116 TauB ABC-type nitrate/ 100.0 2E-40 4.4E-45 285.4 9.5 181 50-240 2-196 (248)
5 COG1135 AbcC ABC-type metal io 100.0 9.5E-40 2.1E-44 287.3 11.1 197 51-257 1-231 (339)
6 COG1127 Ttg2A ABC-type transpo 100.0 1.4E-39 3E-44 277.3 10.4 201 47-257 4-235 (263)
7 COG3839 MalK ABC-type sugar tr 100.0 1.4E-39 3.1E-44 294.7 10.0 198 50-257 2-223 (338)
8 COG1120 FepC ABC-type cobalami 100.0 5E-39 1.1E-43 281.2 9.8 198 51-258 2-229 (258)
9 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.2E-39 1.1E-43 279.7 9.4 201 49-257 2-227 (254)
10 COG1124 DppF ABC-type dipeptid 100.0 1.8E-38 3.9E-43 271.4 9.8 203 50-258 2-232 (252)
11 COG1118 CysA ABC-type sulfate/ 100.0 4.6E-38 9.9E-43 276.2 9.1 197 51-257 2-227 (345)
12 COG3638 ABC-type phosphate/pho 100.0 2E-37 4.2E-42 263.5 10.5 204 50-263 2-243 (258)
13 COG2884 FtsE Predicted ATPase 100.0 6E-37 1.3E-41 252.5 10.7 189 51-249 1-218 (223)
14 COG1131 CcmA ABC-type multidru 100.0 1.5E-36 3.3E-41 274.1 11.5 199 50-258 3-227 (293)
15 COG4175 ProV ABC-type proline/ 100.0 4.6E-37 1E-41 270.5 7.6 180 73-257 45-254 (386)
16 PRK11432 fbpC ferric transport 100.0 9E-37 1.9E-41 281.8 9.0 202 46-257 1-226 (351)
17 COG1122 CbiO ABC-type cobalt t 100.0 3E-36 6.4E-41 262.7 11.4 201 50-259 2-230 (235)
18 COG1117 PstB ABC-type phosphat 100.0 6.7E-36 1.5E-40 250.5 12.3 200 47-257 3-237 (253)
19 COG4555 NatA ABC-type Na+ tran 100.0 1.6E-36 3.5E-41 252.1 8.1 200 51-259 1-224 (245)
20 COG1136 SalX ABC-type antimicr 100.0 5.9E-36 1.3E-40 257.1 10.3 183 52-240 2-208 (226)
21 PRK11650 ugpC glycerol-3-phosp 100.0 3.1E-36 6.7E-41 278.8 8.4 197 51-257 3-224 (356)
22 PRK13537 nodulation ABC transp 100.0 7.1E-36 1.5E-40 271.6 10.2 201 48-258 4-228 (306)
23 TIGR03265 PhnT2 putative 2-ami 100.0 5.3E-36 1.1E-40 277.0 9.1 198 50-257 3-224 (353)
24 PRK09452 potA putrescine/sperm 100.0 7E-36 1.5E-40 277.8 9.4 202 46-257 9-234 (375)
25 PRK13536 nodulation factor exp 100.0 1.4E-35 3.1E-40 272.8 10.8 201 48-258 38-262 (340)
26 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-35 2.8E-40 273.0 9.3 197 51-257 1-230 (343)
27 COG1123 ATPase components of v 100.0 2.8E-35 6.1E-40 278.9 11.5 207 48-257 277-519 (539)
28 TIGR03258 PhnT 2-aminoethylpho 100.0 1.2E-35 2.7E-40 275.1 8.5 196 52-257 6-228 (362)
29 COG0411 LivG ABC-type branched 100.0 9.4E-36 2E-40 254.8 6.8 199 49-257 2-239 (250)
30 PRK11607 potG putrescine trans 100.0 2.6E-35 5.7E-40 274.3 8.6 199 49-257 17-239 (377)
31 COG1137 YhbG ABC-type (unclass 100.0 5.9E-36 1.3E-40 248.4 2.9 200 50-259 3-230 (243)
32 PRK10851 sulfate/thiosulfate t 100.0 8.2E-35 1.8E-39 269.0 9.0 197 51-257 2-226 (353)
33 COG0444 DppD ABC-type dipeptid 100.0 1.3E-34 2.8E-39 257.5 9.3 206 51-257 1-243 (316)
34 PRK15079 oligopeptide ABC tran 100.0 1E-34 2.2E-39 266.3 9.0 207 48-257 5-251 (331)
35 PRK11000 maltose/maltodextrin 100.0 1.1E-34 2.3E-39 270.0 9.2 197 51-257 3-223 (369)
36 TIGR01288 nodI ATP-binding ABC 100.0 1.4E-34 3.1E-39 262.8 9.6 199 50-258 3-225 (303)
37 COG3840 ThiQ ABC-type thiamine 100.0 1.9E-34 4.2E-39 236.2 9.0 194 52-257 2-219 (231)
38 TIGR01186 proV glycine betaine 100.0 2.2E-34 4.7E-39 266.4 9.6 189 59-257 1-219 (363)
39 COG4598 HisP ABC-type histidin 100.0 2E-34 4.3E-39 235.8 8.0 200 48-257 3-241 (256)
40 PRK11308 dppF dipeptide transp 100.0 2.9E-34 6.3E-39 263.0 9.7 206 49-257 3-244 (327)
41 COG0410 LivF ABC-type branched 100.0 2.9E-34 6.3E-39 243.9 8.9 200 49-258 1-227 (237)
42 COG4152 ABC-type uncharacteriz 100.0 3.8E-34 8.3E-39 244.1 9.2 199 51-259 2-221 (300)
43 cd03261 ABC_Org_Solvent_Resist 100.0 2.9E-34 6.3E-39 251.6 8.7 195 52-256 1-225 (235)
44 cd03265 ABC_DrrA DrrA is the A 100.0 4E-34 8.6E-39 248.3 9.2 193 52-254 1-218 (220)
45 PRK11153 metN DL-methionine tr 100.0 3.9E-34 8.5E-39 264.0 9.5 196 51-256 1-229 (343)
46 PRK11022 dppD dipeptide transp 100.0 5.4E-34 1.2E-38 261.2 9.7 202 51-257 3-243 (326)
47 TIGR01188 drrA daunorubicin re 100.0 4.9E-34 1.1E-38 259.2 8.9 189 60-258 2-214 (302)
48 COG1123 ATPase components of v 100.0 7E-34 1.5E-38 269.4 10.0 207 49-259 3-246 (539)
49 TIGR03522 GldA_ABC_ATP gliding 100.0 6.9E-34 1.5E-38 258.1 9.6 198 51-258 2-222 (301)
50 PRK10070 glycine betaine trans 100.0 1.3E-33 2.8E-38 264.2 10.7 197 51-257 28-254 (400)
51 cd03263 ABC_subfamily_A The AB 100.0 9.7E-34 2.1E-38 245.7 9.2 193 52-254 1-218 (220)
52 PRK09536 btuD corrinoid ABC tr 100.0 8.1E-34 1.8E-38 265.6 8.9 197 50-256 2-227 (402)
53 cd03259 ABC_Carb_Solutes_like 100.0 8.7E-34 1.9E-38 245.0 8.4 179 52-240 1-196 (213)
54 PRK13637 cbiO cobalt transport 100.0 1.3E-33 2.9E-38 254.6 9.4 198 51-257 2-234 (287)
55 cd03258 ABC_MetN_methionine_tr 100.0 1.7E-33 3.7E-38 246.4 9.6 195 51-255 1-228 (233)
56 cd03296 ABC_CysA_sulfate_impor 100.0 1.3E-33 2.8E-38 248.2 8.6 196 51-256 2-225 (239)
57 PRK09473 oppD oligopeptide tra 100.0 2E-33 4.4E-38 257.8 10.2 203 47-257 8-251 (330)
58 cd03219 ABC_Mj1267_LivG_branch 100.0 1.9E-33 4.1E-38 246.4 9.3 195 52-256 1-231 (236)
59 cd03260 ABC_PstB_phosphate_tra 100.0 1.6E-33 3.5E-38 245.5 8.4 192 52-254 1-226 (227)
60 PRK15093 antimicrobial peptide 100.0 2.9E-33 6.4E-38 256.9 10.3 203 50-257 2-248 (330)
61 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.3E-33 2.8E-38 252.4 7.6 195 53-257 26-250 (269)
62 PRK11629 lolD lipoprotein tran 100.0 2.4E-33 5.2E-38 245.5 9.0 182 49-240 3-211 (233)
63 PRK13651 cobalt transporter AT 100.0 1.9E-33 4E-38 255.5 8.5 197 51-257 2-254 (305)
64 COG4525 TauB ABC-type taurine 100.0 3.9E-33 8.4E-38 230.9 9.5 194 50-253 2-220 (259)
65 cd03218 ABC_YhbG The ABC trans 100.0 3.4E-33 7.4E-38 244.2 9.3 195 52-256 1-221 (232)
66 PRK11831 putative ABC transpor 100.0 3.6E-33 7.8E-38 249.6 9.6 200 48-257 4-233 (269)
67 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.6E-33 7.9E-38 244.9 9.5 198 51-258 1-222 (236)
68 cd03256 ABC_PhnC_transporter A 100.0 7.3E-33 1.6E-37 243.4 11.1 196 52-257 1-234 (241)
69 cd03301 ABC_MalK_N The N-termi 100.0 4.2E-33 9.2E-38 240.6 9.0 179 52-240 1-196 (213)
70 TIGR00960 3a0501s02 Type II (G 100.0 4.1E-33 8.9E-38 241.2 8.9 180 51-240 1-203 (216)
71 PRK13647 cbiO cobalt transport 100.0 3.2E-33 6.8E-38 250.6 8.3 197 50-255 3-225 (274)
72 PRK13634 cbiO cobalt transport 100.0 3.4E-33 7.3E-38 252.3 8.6 196 52-257 3-235 (290)
73 cd03235 ABC_Metallic_Cations A 100.0 4.7E-33 1E-37 240.4 9.0 180 53-240 1-197 (213)
74 cd03224 ABC_TM1139_LivF_branch 100.0 6.3E-33 1.4E-37 240.9 9.7 192 52-255 1-219 (222)
75 PRK11701 phnK phosphonate C-P 100.0 8E-33 1.7E-37 245.8 10.5 203 46-256 1-240 (258)
76 cd03269 ABC_putative_ATPase Th 100.0 4.3E-33 9.4E-38 240.1 8.3 179 52-240 1-193 (210)
77 TIGR03415 ABC_choXWV_ATP choli 100.0 5.7E-33 1.2E-37 258.2 9.6 193 55-257 28-254 (382)
78 COG4181 Predicted ABC-type tra 100.0 1.9E-32 4.1E-37 222.5 11.3 188 47-240 2-212 (228)
79 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8E-33 1.7E-37 239.7 9.7 178 52-239 1-205 (218)
80 PRK13643 cbiO cobalt transport 100.0 5E-33 1.1E-37 251.0 8.6 197 51-257 1-233 (288)
81 PRK13650 cbiO cobalt transport 100.0 5.8E-33 1.3E-37 249.5 8.8 199 50-257 3-229 (279)
82 PRK13641 cbiO cobalt transport 100.0 6.9E-33 1.5E-37 250.0 9.2 197 51-257 2-234 (287)
83 PRK11264 putative amino-acid A 100.0 9.6E-33 2.1E-37 244.1 9.9 196 51-256 3-232 (250)
84 PRK10584 putative ABC transpor 100.0 9.5E-33 2.1E-37 240.9 9.7 184 46-239 1-211 (228)
85 TIGR02315 ABC_phnC phosphonate 100.0 8E-33 1.7E-37 243.5 9.2 196 51-256 1-234 (243)
86 PRK13636 cbiO cobalt transport 100.0 8.5E-33 1.8E-37 248.9 9.6 199 50-257 4-231 (283)
87 TIGR03410 urea_trans_UrtE urea 100.0 8.1E-33 1.8E-37 241.6 9.2 194 52-258 1-222 (230)
88 cd03266 ABC_NatA_sodium_export 100.0 6E-33 1.3E-37 240.4 8.1 179 52-240 2-201 (218)
89 PRK13638 cbiO cobalt transport 100.0 7.7E-33 1.7E-37 247.7 8.8 198 51-257 1-225 (271)
90 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.1E-32 2.3E-37 242.8 9.5 194 53-256 2-224 (242)
91 TIGR03411 urea_trans_UrtD urea 100.0 1.5E-32 3.3E-37 241.7 10.3 197 50-256 1-230 (242)
92 PRK09493 glnQ glutamine ABC tr 100.0 1.1E-32 2.5E-37 242.3 9.1 195 52-256 2-224 (240)
93 PRK13548 hmuV hemin importer A 100.0 1.5E-32 3.3E-37 244.1 9.8 197 51-257 2-230 (258)
94 cd03264 ABC_drug_resistance_li 100.0 1.2E-32 2.7E-37 237.4 8.9 178 52-240 1-194 (211)
95 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.3E-32 5E-37 237.3 10.5 179 52-240 1-197 (220)
96 PRK13635 cbiO cobalt transport 100.0 9.7E-33 2.1E-37 248.0 8.4 200 49-257 3-229 (279)
97 PRK13631 cbiO cobalt transport 100.0 1.6E-32 3.5E-37 250.8 9.8 201 47-257 17-265 (320)
98 TIGR00972 3a0107s01c2 phosphat 100.0 2.2E-32 4.9E-37 241.4 10.2 195 51-256 1-231 (247)
99 PRK14267 phosphate ABC transpo 100.0 2.3E-32 5.1E-37 242.1 10.2 198 49-256 2-236 (253)
100 PRK10895 lipopolysaccharide AB 100.0 1.3E-32 2.9E-37 241.9 8.3 198 50-257 2-226 (241)
101 cd03225 ABC_cobalt_CbiO_domain 100.0 3.5E-32 7.5E-37 234.5 10.5 178 53-240 1-199 (211)
102 cd03268 ABC_BcrA_bacitracin_re 100.0 1.8E-32 3.8E-37 236.0 8.6 175 52-240 1-191 (208)
103 TIGR02673 FtsE cell division A 100.0 2.5E-32 5.5E-37 235.9 9.5 180 51-240 1-202 (214)
104 PRK14242 phosphate transporter 100.0 5.5E-32 1.2E-36 239.7 11.9 202 47-256 2-236 (253)
105 PRK14247 phosphate ABC transpo 100.0 3.3E-32 7.2E-37 240.7 10.2 198 50-257 2-234 (250)
106 PRK13644 cbiO cobalt transport 100.0 1.7E-32 3.7E-37 245.8 8.5 198 51-257 1-224 (274)
107 cd03226 ABC_cobalt_CbiO_domain 100.0 2.8E-32 6E-37 234.3 9.2 175 53-240 1-191 (205)
108 PRK13646 cbiO cobalt transport 100.0 1.5E-32 3.2E-37 247.7 7.8 196 52-257 3-235 (286)
109 PRK15112 antimicrobial peptide 100.0 1.9E-32 4E-37 244.7 8.0 201 49-257 2-239 (267)
110 PRK13652 cbiO cobalt transport 100.0 3.1E-32 6.7E-37 244.5 9.4 198 50-257 2-227 (277)
111 TIGR02211 LolD_lipo_ex lipopro 100.0 4E-32 8.8E-37 235.7 9.8 179 52-240 2-207 (221)
112 PRK14268 phosphate ABC transpo 100.0 3.9E-32 8.4E-37 241.5 9.8 198 48-256 9-241 (258)
113 cd03257 ABC_NikE_OppD_transpor 100.0 4.9E-32 1.1E-36 236.1 10.2 182 51-240 1-211 (228)
114 PRK11248 tauB taurine transpor 100.0 4.6E-32 1E-36 240.6 10.2 180 51-240 1-194 (255)
115 PRK10261 glutathione transport 100.0 3.5E-32 7.5E-37 269.0 10.5 202 48-257 310-553 (623)
116 PRK14273 phosphate ABC transpo 100.0 5.3E-32 1.2E-36 240.0 10.5 198 48-256 4-237 (254)
117 PRK11300 livG leucine/isoleuci 100.0 4.3E-32 9.4E-37 240.6 9.9 198 49-256 3-242 (255)
118 PRK13633 cobalt transporter AT 100.0 2.4E-32 5.3E-37 245.6 8.3 200 49-257 2-233 (280)
119 PRK11124 artP arginine transpo 100.0 3.1E-32 6.6E-37 239.8 8.6 195 51-255 2-228 (242)
120 PRK10619 histidine/lysine/argi 100.0 5.1E-32 1.1E-36 240.5 10.0 197 50-256 4-240 (257)
121 PRK11247 ssuB aliphatic sulfon 100.0 3.3E-32 7.1E-37 241.8 8.7 189 47-251 8-217 (257)
122 COG4559 ABC-type hemin transpo 100.0 5E-32 1.1E-36 226.9 9.2 198 51-258 1-231 (259)
123 COG4172 ABC-type uncharacteriz 100.0 6.4E-32 1.4E-36 244.5 10.6 206 48-257 273-516 (534)
124 TIGR02769 nickel_nikE nickel i 100.0 5.1E-32 1.1E-36 241.6 9.8 199 51-257 2-240 (265)
125 PRK14241 phosphate transporter 100.0 9.6E-32 2.1E-36 238.9 11.4 198 50-257 3-242 (258)
126 PRK11614 livF leucine/isoleuci 100.0 3.2E-32 6.9E-37 239.0 7.9 196 49-256 3-225 (237)
127 PRK10908 cell division protein 100.0 5.5E-32 1.2E-36 235.2 9.2 179 52-240 2-202 (222)
128 TIGR03005 ectoine_ehuA ectoine 100.0 4.9E-32 1.1E-36 239.9 9.0 195 52-256 1-235 (252)
129 PRK13632 cbiO cobalt transport 100.0 4.9E-32 1.1E-36 242.5 8.8 199 49-257 5-231 (271)
130 PRK13639 cbiO cobalt transport 100.0 4.3E-32 9.4E-37 243.4 8.5 197 51-257 1-226 (275)
131 PRK14270 phosphate ABC transpo 100.0 1.1E-31 2.4E-36 237.5 10.7 198 49-257 2-235 (251)
132 PRK10261 glutathione transport 100.0 6.1E-32 1.3E-36 267.2 10.0 202 47-256 8-257 (623)
133 PRK13640 cbiO cobalt transport 100.0 4.9E-32 1.1E-36 243.8 8.3 200 49-257 3-232 (282)
134 PRK14274 phosphate ABC transpo 100.0 1.2E-31 2.5E-36 238.5 10.6 200 47-257 8-243 (259)
135 PRK09984 phosphonate/organopho 100.0 8.3E-32 1.8E-36 239.8 9.5 197 49-255 2-240 (262)
136 COG1134 TagH ABC-type polysacc 100.0 5E-32 1.1E-36 232.2 7.6 187 62-262 38-241 (249)
137 PRK14235 phosphate transporter 100.0 1.6E-31 3.4E-36 238.7 11.1 199 47-256 15-250 (267)
138 PRK10575 iron-hydroxamate tran 100.0 7.2E-32 1.5E-36 240.7 8.3 197 50-256 10-236 (265)
139 PRK11144 modC molybdate transp 100.0 1.1E-31 2.3E-36 248.6 9.6 187 52-257 2-218 (352)
140 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-31 3E-36 231.1 9.6 179 52-240 1-200 (213)
141 TIGR03608 L_ocin_972_ABC putat 100.0 1.6E-31 3.4E-36 229.5 9.9 175 54-238 1-197 (206)
142 PRK13645 cbiO cobalt transport 100.0 8.7E-32 1.9E-36 243.0 8.7 198 50-257 5-240 (289)
143 cd03292 ABC_FtsE_transporter F 100.0 1.4E-31 3.1E-36 231.1 9.7 178 53-240 2-201 (214)
144 PRK10771 thiQ thiamine transpo 100.0 1.3E-31 2.9E-36 234.4 9.5 194 52-257 2-219 (232)
145 TIGR02323 CP_lyasePhnK phospho 100.0 1.5E-31 3.3E-36 236.8 10.1 200 50-257 2-238 (253)
146 PRK10744 pstB phosphate transp 100.0 1.5E-31 3.3E-36 237.9 10.1 202 48-257 10-244 (260)
147 PRK13649 cbiO cobalt transport 100.0 1E-31 2.2E-36 241.5 9.0 196 52-257 3-234 (280)
148 PRK14239 phosphate transporter 100.0 2.6E-31 5.6E-36 235.2 11.3 198 49-257 3-236 (252)
149 PRK13648 cbiO cobalt transport 100.0 8.9E-32 1.9E-36 240.6 8.1 200 49-257 5-231 (269)
150 PRK10762 D-ribose transporter 100.0 5E-32 1.1E-36 262.0 6.9 197 49-255 2-228 (501)
151 TIGR03873 F420-0_ABC_ATP propo 100.0 1.4E-31 3.1E-36 237.5 8.9 196 52-257 2-226 (256)
152 cd03300 ABC_PotA_N PotA is an 100.0 2.2E-31 4.7E-36 233.0 9.9 196 52-257 1-220 (232)
153 PRK13642 cbiO cobalt transport 100.0 1.5E-31 3.2E-36 240.1 8.9 198 50-257 3-229 (277)
154 PRK11231 fecE iron-dicitrate t 100.0 1.3E-31 2.7E-36 237.7 8.3 196 51-256 2-226 (255)
155 PRK14269 phosphate ABC transpo 100.0 3.6E-31 7.9E-36 233.6 11.0 198 51-256 2-229 (246)
156 PRK13549 xylose transporter AT 100.0 9E-32 1.9E-36 260.5 7.8 197 49-255 3-230 (506)
157 TIGR03740 galliderm_ABC gallid 100.0 2E-31 4.4E-36 231.8 9.1 189 52-254 1-210 (223)
158 PRK10418 nikD nickel transport 100.0 3.8E-31 8.3E-36 234.6 11.0 195 51-256 4-229 (254)
159 PRK14256 phosphate ABC transpo 100.0 4.4E-31 9.6E-36 233.8 11.4 201 50-257 3-236 (252)
160 PRK10253 iron-enterobactin tra 100.0 1.3E-31 2.8E-36 239.0 8.0 198 50-257 6-233 (265)
161 TIGR02142 modC_ABC molybdenum 100.0 2.4E-31 5.2E-36 246.4 10.0 188 56-257 4-221 (354)
162 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.3E-31 5E-36 229.5 8.8 177 52-240 1-194 (211)
163 PRK15056 manganese/iron transp 100.0 1.7E-31 3.6E-36 239.2 8.3 202 47-256 2-229 (272)
164 PRK14254 phosphate ABC transpo 100.0 4.8E-31 1E-35 237.7 11.1 201 47-256 35-268 (285)
165 PRK14237 phosphate transporter 100.0 4.1E-31 9E-36 236.0 10.5 201 48-256 17-250 (267)
166 cd03299 ABC_ModC_like Archeal 100.0 3.7E-31 7.9E-36 232.1 9.9 194 52-256 1-218 (235)
167 PRK14245 phosphate ABC transpo 100.0 5E-31 1.1E-35 233.2 10.7 197 50-257 2-234 (250)
168 PRK14248 phosphate ABC transpo 100.0 6.5E-31 1.4E-35 234.8 11.2 203 47-257 17-252 (268)
169 PRK14250 phosphate ABC transpo 100.0 3E-31 6.5E-36 233.5 8.9 191 51-256 3-220 (241)
170 PRK09700 D-allose transporter 100.0 1.6E-31 3.4E-36 259.0 7.6 198 49-256 3-233 (510)
171 PRK15134 microcin C ABC transp 100.0 3.9E-31 8.5E-36 257.3 10.3 200 49-256 3-245 (529)
172 PRK14259 phosphate ABC transpo 100.0 5.3E-31 1.2E-35 235.6 10.3 202 47-257 9-253 (269)
173 PRK14272 phosphate ABC transpo 100.0 6.5E-31 1.4E-35 232.6 10.5 197 51-257 4-236 (252)
174 TIGR00968 3a0106s01 sulfate AB 100.0 3.6E-31 7.7E-36 232.5 8.7 196 52-257 1-220 (237)
175 PRK13538 cytochrome c biogenes 100.0 5.4E-31 1.2E-35 226.2 9.5 177 51-240 1-194 (204)
176 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-31 6.2E-36 257.1 8.7 196 47-256 7-228 (510)
177 COG4604 CeuD ABC-type enteroch 100.0 1.4E-31 3.1E-36 221.9 5.5 200 51-260 1-228 (252)
178 COG1129 MglA ABC-type sugar tr 100.0 2.2E-31 4.7E-36 250.9 7.4 195 47-251 4-228 (500)
179 TIGR01277 thiQ thiamine ABC tr 100.0 7.5E-31 1.6E-35 226.8 10.3 186 53-250 2-211 (213)
180 PRK14246 phosphate ABC transpo 100.0 8.8E-31 1.9E-35 232.7 10.9 201 47-257 6-241 (257)
181 PRK14275 phosphate ABC transpo 100.0 6.8E-31 1.5E-35 236.9 10.3 202 48-257 36-270 (286)
182 TIGR01978 sufC FeS assembly AT 100.0 7.2E-31 1.6E-35 231.0 10.2 194 52-255 1-232 (243)
183 PRK14262 phosphate ABC transpo 100.0 8E-31 1.7E-35 231.8 10.5 197 50-257 2-234 (250)
184 PRK14261 phosphate ABC transpo 100.0 9.6E-31 2.1E-35 231.8 10.9 203 46-257 1-237 (253)
185 TIGR03269 met_CoM_red_A2 methy 100.0 8.2E-31 1.8E-35 254.6 11.4 199 52-259 1-260 (520)
186 PRK14240 phosphate transporter 100.0 7.9E-31 1.7E-35 231.9 10.0 195 51-256 3-233 (250)
187 PRK10419 nikE nickel transport 100.0 6.2E-31 1.3E-35 235.0 9.4 199 50-256 2-240 (268)
188 PRK14249 phosphate ABC transpo 100.0 1.3E-30 2.9E-35 230.6 11.3 197 49-256 2-234 (251)
189 TIGR01166 cbiO cobalt transpor 100.0 5.4E-31 1.2E-35 223.7 8.3 160 73-237 9-189 (190)
190 PRK15134 microcin C ABC transp 100.0 9E-31 1.9E-35 254.8 10.9 200 48-256 272-514 (529)
191 PRK14238 phosphate transporter 100.0 1.3E-30 2.9E-35 233.2 10.9 205 44-256 17-254 (271)
192 PRK09544 znuC high-affinity zi 100.0 9E-31 2E-35 231.8 9.7 189 50-256 3-208 (251)
193 PRK14251 phosphate ABC transpo 100.0 1.5E-30 3.3E-35 230.2 11.0 199 50-256 3-234 (251)
194 PRK13547 hmuV hemin importer A 100.0 5.7E-31 1.2E-35 235.6 8.1 197 51-257 1-244 (272)
195 PRK14271 phosphate ABC transpo 100.0 1.3E-30 2.8E-35 233.9 10.4 199 48-257 18-251 (276)
196 TIGR03269 met_CoM_red_A2 methy 100.0 9.4E-31 2E-35 254.2 10.2 199 48-257 276-517 (520)
197 TIGR02770 nickel_nikD nickel i 100.0 1.3E-30 2.8E-35 227.8 10.1 181 73-256 3-214 (230)
198 PRK14255 phosphate ABC transpo 100.0 2E-30 4.4E-35 229.5 11.2 201 48-257 2-236 (252)
199 PRK13543 cytochrome c biogenes 100.0 2.6E-30 5.7E-35 223.6 11.4 181 47-240 7-202 (214)
200 COG4608 AppF ABC-type oligopep 100.0 1.1E-30 2.5E-35 227.7 9.0 175 49-257 2-199 (268)
201 PRK14253 phosphate ABC transpo 100.0 2.2E-30 4.8E-35 228.9 10.8 195 51-256 3-232 (249)
202 PRK10247 putative ABC transpor 100.0 2.4E-30 5.2E-35 225.5 10.8 178 49-239 5-202 (225)
203 PRK14243 phosphate transporter 100.0 2.2E-30 4.8E-35 230.9 10.7 199 50-257 9-248 (264)
204 COG4148 ModC ABC-type molybdat 100.0 2E-30 4.4E-35 225.1 9.8 171 76-257 19-218 (352)
205 PRK11819 putative ABC transpor 100.0 3.3E-30 7.1E-35 252.1 12.5 196 47-255 2-248 (556)
206 TIGR01257 rim_protein retinal- 100.0 1.3E-30 2.8E-35 278.6 10.3 203 47-259 1933-2161(2272)
207 PRK14236 phosphate transporter 100.0 2.3E-30 5E-35 231.8 10.4 202 47-256 21-255 (272)
208 COG4172 ABC-type uncharacteriz 100.0 3.9E-30 8.4E-35 233.0 11.6 210 47-257 2-247 (534)
209 TIGR02324 CP_lyasePhnL phospho 100.0 3.9E-30 8.4E-35 223.8 11.3 180 51-240 1-214 (224)
210 cd03297 ABC_ModC_molybdenum_tr 100.0 2.2E-30 4.7E-35 223.9 9.4 170 56-240 5-197 (214)
211 COG4161 ArtP ABC-type arginine 100.0 3.3E-30 7.1E-35 207.8 9.3 194 51-254 2-227 (242)
212 COG2274 SunT ABC-type bacterio 100.0 6E-31 1.3E-35 260.3 6.0 193 49-258 469-697 (709)
213 PRK13539 cytochrome c biogenes 100.0 2.3E-30 4.9E-35 222.9 8.8 176 51-240 2-192 (207)
214 PRK14260 phosphate ABC transpo 100.0 4.5E-30 9.8E-35 228.3 10.6 196 50-256 6-242 (259)
215 PRK15064 ABC transporter ATP-b 100.0 5.6E-30 1.2E-34 249.2 11.2 194 48-257 316-525 (530)
216 PRK14265 phosphate ABC transpo 100.0 5.7E-30 1.2E-34 229.5 10.2 199 47-257 16-258 (274)
217 PRK10982 galactose/methyl gala 100.0 2.4E-30 5.3E-35 249.6 8.4 192 54-255 1-221 (491)
218 TIGR01184 ntrCD nitrate transp 100.0 4.1E-30 8.9E-35 224.8 8.9 178 73-255 2-202 (230)
219 cd03231 ABC_CcmA_heme_exporter 100.0 5.6E-30 1.2E-34 219.4 9.4 173 52-240 1-190 (201)
220 TIGR01189 ccmA heme ABC export 100.0 5.4E-30 1.2E-34 219.0 9.1 174 52-239 1-191 (198)
221 PRK14252 phosphate ABC transpo 100.0 8.8E-30 1.9E-34 227.2 10.8 199 47-256 12-248 (265)
222 PRK11288 araG L-arabinose tran 100.0 2.3E-30 4.9E-35 250.4 7.5 192 50-251 3-223 (501)
223 cd03267 ABC_NatA_like Similar 100.0 5.5E-30 1.2E-34 224.8 9.1 173 59-240 29-219 (236)
224 TIGR01257 rim_protein retinal- 100.0 5E-30 1.1E-34 274.1 10.5 201 48-258 925-1150(2272)
225 PRK14263 phosphate ABC transpo 100.0 9.9E-30 2.2E-34 226.4 10.7 198 48-257 5-245 (261)
226 TIGR02982 heterocyst_DevA ABC 100.0 5E-30 1.1E-34 222.6 8.6 177 52-238 2-205 (220)
227 COG4167 SapF ABC-type antimicr 100.0 1E-29 2.2E-34 208.7 9.8 206 49-257 2-239 (267)
228 PRK14257 phosphate ABC transpo 100.0 7.8E-30 1.7E-34 233.9 10.2 203 47-257 76-313 (329)
229 PRK13549 xylose transporter AT 100.0 3.2E-30 7E-35 249.6 8.1 200 48-255 256-492 (506)
230 COG4107 PhnK ABC-type phosphon 100.0 1.7E-29 3.8E-34 205.9 11.0 203 47-257 2-241 (258)
231 PRK14264 phosphate ABC transpo 100.0 1.9E-29 4.1E-34 229.4 12.6 203 47-257 41-289 (305)
232 PRK14244 phosphate ABC transpo 100.0 7.4E-30 1.6E-34 225.9 9.4 196 53-256 7-236 (251)
233 TIGR03771 anch_rpt_ABC anchore 100.0 8.9E-30 1.9E-34 221.7 9.6 179 76-257 1-201 (223)
234 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.5E-30 1.4E-34 222.7 8.7 175 52-240 23-207 (224)
235 cd03252 ABCC_Hemolysin The ABC 100.0 1.8E-30 4E-35 227.7 5.3 193 53-258 2-226 (237)
236 PRK13540 cytochrome c biogenes 100.0 1.2E-29 2.6E-34 217.2 10.0 173 52-239 2-191 (200)
237 COG3845 ABC-type uncharacteriz 100.0 1.2E-29 2.5E-34 235.4 10.5 182 49-240 2-205 (501)
238 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-30 9.7E-35 248.3 7.9 195 51-255 1-228 (500)
239 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.1E-29 4.6E-34 246.2 12.5 195 49-256 2-247 (552)
240 PRK15064 ABC transporter ATP-b 100.0 2.1E-29 4.5E-34 245.3 11.9 193 51-256 1-241 (530)
241 PRK14258 phosphate ABC transpo 100.0 1.8E-29 3.8E-34 224.8 10.4 198 49-257 5-245 (261)
242 cd03251 ABCC_MsbA MsbA is an e 100.0 3.3E-30 7.2E-35 225.6 5.1 193 52-258 1-226 (234)
243 PRK13541 cytochrome c biogenes 100.0 1.7E-29 3.7E-34 215.4 8.5 173 52-240 2-188 (195)
244 cd03369 ABCC_NFT1 Domain 2 of 100.0 3E-29 6.5E-34 215.7 9.7 171 47-240 2-189 (207)
245 PRK14266 phosphate ABC transpo 100.0 3E-29 6.5E-34 221.8 10.0 198 51-256 3-233 (250)
246 cd03254 ABCC_Glucan_exporter_l 100.0 1.9E-29 4.2E-34 220.1 8.3 188 52-256 3-225 (229)
247 PRK10938 putative molybdenum t 100.0 1.7E-29 3.8E-34 243.6 8.7 190 51-256 3-223 (490)
248 cd03234 ABCG_White The White s 100.0 4.6E-29 1E-33 217.5 10.5 183 51-240 3-209 (226)
249 cd03245 ABCC_bacteriocin_expor 100.0 2E-29 4.3E-34 218.7 7.6 170 52-238 3-202 (220)
250 CHL00131 ycf16 sulfate ABC tra 100.0 4.3E-29 9.4E-34 220.9 9.5 196 49-254 5-238 (252)
251 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.9E-29 6.2E-34 251.1 9.4 189 51-257 451-673 (686)
252 PRK03695 vitamin B12-transport 100.0 3.4E-29 7.5E-34 221.3 8.7 188 53-256 2-221 (248)
253 PRK09700 D-allose transporter 100.0 2.1E-29 4.6E-34 244.2 8.0 194 48-252 262-493 (510)
254 PRK13545 tagH teichoic acids e 100.0 3.2E-29 7E-34 238.5 9.0 195 49-258 19-233 (549)
255 PRK10636 putative ABC transpor 100.0 3.4E-29 7.3E-34 248.1 9.4 194 47-257 308-517 (638)
256 PRK11176 lipid transporter ATP 100.0 3.7E-29 8E-34 246.0 9.4 192 51-258 341-568 (582)
257 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.7E-29 1.5E-33 242.7 11.1 197 48-258 319-532 (552)
258 PRK11819 putative ABC transpor 100.0 6.7E-29 1.5E-33 242.8 10.5 197 48-258 321-534 (556)
259 PRK13546 teichoic acids export 100.0 8.5E-29 1.8E-33 220.6 10.1 177 73-259 41-234 (264)
260 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.4E-29 3.1E-34 222.2 4.9 191 53-257 2-226 (238)
261 TIGR02633 xylG D-xylose ABC tr 100.0 2.7E-29 5.8E-34 242.9 7.2 194 49-251 255-486 (500)
262 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 5.2E-29 1.1E-33 250.2 8.9 191 50-257 476-700 (710)
263 COG4674 Uncharacterized ABC-ty 100.0 4.5E-29 9.7E-34 206.7 6.9 197 50-256 4-234 (249)
264 PRK10762 D-ribose transporter 100.0 4.8E-29 1E-33 241.2 7.8 193 49-255 255-482 (501)
265 KOG0058 Peptide exporter, ABC 100.0 3.7E-29 8.1E-34 241.0 6.7 200 48-258 462-692 (716)
266 cd03253 ABCC_ATM1_transporter 100.0 2.6E-29 5.6E-34 220.2 5.2 191 53-257 2-224 (236)
267 cd03215 ABC_Carb_Monos_II This 100.0 1.4E-28 3E-33 207.7 9.4 150 49-240 2-169 (182)
268 PRK09580 sufC cysteine desulfu 100.0 1.8E-28 3.9E-33 216.4 10.5 195 51-255 1-233 (248)
269 cd03289 ABCC_CFTR2 The CFTR su 100.0 9.8E-29 2.1E-33 221.3 8.7 187 52-257 3-225 (275)
270 cd03244 ABCC_MRP_domain2 Domai 100.0 1.2E-28 2.6E-33 213.9 8.8 171 52-240 3-203 (221)
271 cd03213 ABCG_EPDR ABCG transpo 100.0 7.5E-29 1.6E-33 211.4 7.3 153 50-239 2-176 (194)
272 COG1119 ModF ABC-type molybden 100.0 5E-29 1.1E-33 213.6 6.1 196 47-250 27-255 (257)
273 TIGR01187 potA spermidine/putr 100.0 7.4E-29 1.6E-33 227.3 7.6 167 86-257 1-190 (325)
274 cd03248 ABCC_TAP TAP, the Tran 100.0 4.5E-29 9.8E-34 217.4 5.9 181 48-239 8-213 (226)
275 cd03223 ABCD_peroxisomal_ALDP 100.0 1.6E-28 3.4E-33 204.4 8.8 144 53-238 2-151 (166)
276 cd03247 ABCC_cytochrome_bd The 100.0 6.3E-29 1.4E-33 209.0 6.4 145 53-240 2-162 (178)
277 cd03230 ABC_DR_subfamily_A Thi 100.0 1.3E-28 2.9E-33 206.1 8.3 144 53-240 2-160 (173)
278 PRK11288 araG L-arabinose tran 100.0 6.6E-29 1.4E-33 240.2 7.0 196 49-257 255-485 (501)
279 COG4988 CydD ABC-type transpor 100.0 3.9E-28 8.5E-33 229.8 11.9 189 53-258 322-544 (559)
280 COG4619 ABC-type uncharacteriz 100.0 1.1E-28 2.4E-33 199.9 7.0 177 51-240 3-199 (223)
281 PLN03211 ABC transporter G-25; 100.0 3.5E-28 7.7E-33 241.0 11.8 194 54-258 71-297 (659)
282 cd03229 ABC_Class3 This class 100.0 1.3E-28 2.8E-33 207.1 7.4 146 53-240 2-166 (178)
283 PRK11174 cysteine/glutathione 100.0 3.2E-28 6.9E-33 239.7 11.0 190 51-258 349-573 (588)
284 COG1101 PhnK ABC-type uncharac 99.9 1.1E-28 2.4E-33 207.3 6.2 194 52-248 2-229 (263)
285 TIGR00958 3a01208 Conjugate Tr 99.9 3.2E-28 7E-33 244.2 10.6 192 50-258 477-703 (711)
286 PRK13409 putative ATPase RIL; 99.9 3.1E-28 6.6E-33 238.7 9.5 183 48-251 337-536 (590)
287 cd03246 ABCC_Protease_Secretio 99.9 2.8E-28 6.1E-33 204.1 8.0 140 53-238 2-159 (173)
288 KOG0055 Multidrug/pheromone ex 99.9 9E-29 2E-33 250.3 5.8 197 48-258 347-577 (1228)
289 PRK11147 ABC transporter ATPas 99.9 4.1E-28 9E-33 240.6 10.2 180 47-240 315-502 (635)
290 TIGR01193 bacteriocin_ABC ABC- 99.9 2.3E-28 5E-33 245.4 8.5 191 51-257 473-697 (708)
291 cd03232 ABC_PDR_domain2 The pl 99.9 2.7E-28 5.8E-33 207.6 7.6 150 51-237 3-170 (192)
292 PRK10790 putative multidrug tr 99.9 4.1E-28 8.9E-33 239.1 10.1 189 51-257 340-563 (592)
293 TIGR03375 type_I_sec_LssB type 99.9 3E-28 6.5E-33 244.1 9.2 192 50-258 462-689 (694)
294 COG1132 MdlB ABC-type multidru 99.9 1.6E-28 3.5E-33 240.8 6.5 190 52-258 329-553 (567)
295 PRK15439 autoinducer 2 ABC tra 99.9 3E-28 6.6E-33 236.0 8.2 195 48-256 265-491 (510)
296 PRK11160 cysteine/glutathione 99.9 5.6E-28 1.2E-32 237.3 9.8 191 50-257 337-562 (574)
297 PRK10938 putative molybdenum t 99.9 3.9E-28 8.5E-33 234.2 7.8 185 48-240 257-467 (490)
298 cd03250 ABCC_MRP_domain1 Domai 99.9 1.9E-27 4E-32 204.1 11.1 166 52-240 1-193 (204)
299 PRK13657 cyclic beta-1,2-gluca 99.9 8.3E-28 1.8E-32 236.7 10.0 191 50-257 333-558 (588)
300 cd03228 ABCC_MRP_Like The MRP 99.9 6.1E-28 1.3E-32 201.7 7.7 142 53-240 2-160 (171)
301 cd03217 ABC_FeS_Assembly ABC-t 99.9 4.3E-28 9.3E-33 207.7 6.9 165 52-256 1-192 (200)
302 cd03288 ABCC_SUR2 The SUR doma 99.9 9.2E-28 2E-32 213.3 9.1 191 49-257 17-243 (257)
303 cd03237 ABC_RNaseL_inhibitor_d 99.9 2.6E-27 5.7E-32 209.0 11.6 152 76-240 20-181 (246)
304 PRK10535 macrolide transporter 99.9 7.3E-28 1.6E-32 239.1 9.0 198 49-256 2-231 (648)
305 PRK10636 putative ABC transpor 99.9 2.1E-27 4.5E-32 235.4 12.0 191 51-255 1-234 (638)
306 TIGR02203 MsbA_lipidA lipid A 99.9 9.4E-28 2E-32 235.5 9.3 191 51-257 330-556 (571)
307 cd03214 ABC_Iron-Siderophores_ 99.9 2.8E-28 6.2E-33 205.4 4.9 152 53-240 1-163 (180)
308 PRK11147 ABC transporter ATPas 99.9 2.4E-27 5.3E-32 235.1 12.0 193 51-256 3-242 (635)
309 PRK10982 galactose/methyl gala 99.9 8.3E-28 1.8E-32 232.0 8.2 194 48-252 247-475 (491)
310 TIGR02868 CydC thiol reductant 99.9 1.3E-27 2.7E-32 232.7 9.2 168 51-235 334-529 (529)
311 PRK15177 Vi polysaccharide exp 99.9 2.5E-27 5.4E-32 204.9 9.5 173 73-256 4-191 (213)
312 cd03290 ABCC_SUR1_N The SUR do 99.9 3.4E-27 7.4E-32 204.5 9.9 169 53-239 2-206 (218)
313 cd03233 ABC_PDR_domain1 The pl 99.9 2.3E-27 4.9E-32 203.5 8.3 162 51-240 3-185 (202)
314 TIGR02204 MsbA_rel ABC transpo 99.9 2.8E-27 6E-32 232.4 9.6 191 50-257 336-563 (576)
315 PLN03073 ABC transporter F fam 99.9 6.3E-27 1.4E-31 233.6 12.2 191 48-255 505-712 (718)
316 TIGR01842 type_I_sec_PrtD type 99.9 3.8E-27 8.3E-32 230.1 10.4 190 50-256 315-541 (544)
317 COG4987 CydC ABC-type transpor 99.9 2.2E-27 4.8E-32 222.0 8.1 190 51-257 336-561 (573)
318 COG4586 ABC-type uncharacteriz 99.9 3E-27 6.4E-32 204.9 8.2 184 73-261 41-250 (325)
319 TIGR01192 chvA glucan exporter 99.9 5.2E-27 1.1E-31 230.9 10.4 191 50-257 333-558 (585)
320 TIGR01846 type_I_sec_HlyB type 99.9 3.6E-27 7.8E-32 236.3 9.5 191 51-258 455-681 (694)
321 KOG0057 Mitochondrial Fe/S clu 99.9 2.6E-27 5.6E-32 221.8 6.6 189 51-257 351-574 (591)
322 PRK10789 putative multidrug tr 99.9 6.9E-27 1.5E-31 229.3 9.3 190 51-257 313-538 (569)
323 cd03216 ABC_Carb_Monos_I This 99.9 3.5E-27 7.7E-32 195.7 5.9 139 52-240 1-147 (163)
324 cd03291 ABCC_CFTR1 The CFTR su 99.9 2E-26 4.2E-31 207.1 11.2 189 47-257 35-247 (282)
325 COG4133 CcmA ABC-type transpor 99.9 1.2E-26 2.6E-31 191.4 8.6 174 51-237 2-192 (209)
326 PLN03130 ABC transporter C fam 99.9 1.3E-26 2.9E-31 248.1 10.6 190 50-257 1236-1461(1622)
327 PLN03232 ABC transporter C fam 99.9 1.1E-26 2.3E-31 248.1 9.8 189 51-257 1234-1458(1495)
328 cd03222 ABC_RNaseL_inhibitor T 99.9 2.1E-26 4.6E-31 193.2 8.5 126 55-240 4-137 (177)
329 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2E-26 4.4E-31 187.4 7.8 126 53-240 2-132 (144)
330 KOG0059 Lipid exporter ABCA1 a 99.9 4.5E-26 9.8E-31 232.6 11.5 198 50-257 563-787 (885)
331 COG0488 Uup ATPase components 99.9 7.8E-26 1.7E-30 217.5 12.5 178 50-240 2-215 (530)
332 cd03236 ABC_RNaseL_inhibitor_d 99.9 3.7E-26 8E-31 202.6 8.9 179 55-249 4-219 (255)
333 TIGR02857 CydD thiol reductant 99.9 5.8E-26 1.3E-30 221.0 10.9 172 51-239 320-521 (529)
334 PTZ00243 ABC transporter; Prov 99.9 3.8E-26 8.3E-31 244.1 10.3 189 51-257 1308-1533(1560)
335 TIGR00957 MRP_assoc_pro multi 99.9 4.7E-26 1E-30 243.6 10.8 191 50-258 1283-1509(1522)
336 COG4136 ABC-type uncharacteriz 99.9 1.3E-26 2.7E-31 184.9 4.4 180 52-239 3-199 (213)
337 PRK10522 multidrug transporter 99.9 3.5E-26 7.6E-31 223.4 8.5 178 51-249 322-530 (547)
338 KOG0055 Multidrug/pheromone ex 99.9 5.6E-26 1.2E-30 230.1 10.2 192 52-257 988-1213(1228)
339 TIGR00956 3a01205 Pleiotropic 99.9 1.5E-26 3.3E-31 245.1 6.4 206 49-261 757-1000(1394)
340 PTZ00265 multidrug resistance 99.9 4.4E-26 9.4E-31 242.1 9.5 190 51-257 1165-1452(1466)
341 TIGR00955 3a01204 The Eye Pigm 99.9 1.1E-25 2.3E-30 222.6 11.6 186 63-258 37-257 (617)
342 TIGR00954 3a01203 Peroxysomal 99.9 6.9E-26 1.5E-30 225.3 9.8 177 50-240 450-644 (659)
343 PTZ00265 multidrug resistance 99.9 7E-26 1.5E-30 240.6 9.2 179 51-240 382-645 (1466)
344 COG0488 Uup ATPase components 99.9 2.4E-25 5.3E-30 214.1 10.4 176 47-240 317-501 (530)
345 COG4618 ArpD ABC-type protease 99.9 1.5E-25 3.3E-30 208.3 8.7 194 51-261 334-564 (580)
346 TIGR01194 cyc_pep_trnsptr cycl 99.9 1.7E-25 3.7E-30 218.9 7.5 170 51-240 337-536 (555)
347 PRK13409 putative ATPase RIL; 99.9 3.3E-25 7.2E-30 217.4 9.2 168 56-240 78-276 (590)
348 TIGR01271 CFTR_protein cystic 99.9 5.3E-25 1.1E-29 235.0 11.4 189 50-257 1216-1440(1490)
349 KOG0056 Heavy metal exporter H 99.9 1.7E-25 3.7E-30 206.8 5.4 195 48-258 534-762 (790)
350 PLN03130 ABC transporter C fam 99.9 2.2E-24 4.8E-29 231.1 11.5 185 50-257 613-828 (1622)
351 COG0396 sufC Cysteine desulfur 99.9 5.6E-24 1.2E-28 180.7 11.5 199 50-259 2-235 (251)
352 TIGR00956 3a01205 Pleiotropic 99.9 3.6E-24 7.9E-29 227.1 12.7 184 73-258 78-301 (1394)
353 PLN03140 ABC transporter G fam 99.9 6.1E-24 1.3E-28 225.2 13.8 180 73-257 182-427 (1470)
354 PLN03140 ABC transporter G fam 99.9 1.1E-24 2.3E-29 230.9 7.4 186 73-262 897-1118(1470)
355 TIGR00957 MRP_assoc_pro multi 99.9 9.6E-25 2.1E-29 233.6 6.7 187 51-257 636-850 (1522)
356 PLN03232 ABC transporter C fam 99.9 2.1E-24 4.6E-29 230.6 9.2 186 50-257 613-828 (1495)
357 cd03238 ABC_UvrA The excision 99.9 1.5E-23 3.2E-28 175.8 9.2 126 73-239 12-153 (176)
358 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.2E-23 2.6E-28 173.3 8.1 128 54-240 2-145 (157)
359 PLN03073 ABC transporter F fam 99.9 2E-23 4.4E-28 208.5 11.3 188 48-254 174-428 (718)
360 TIGR01271 CFTR_protein cystic 99.9 7.8E-24 1.7E-28 226.1 8.2 170 73-257 443-636 (1490)
361 COG4778 PhnL ABC-type phosphon 99.9 2.6E-23 5.7E-28 169.1 7.5 184 51-240 4-217 (235)
362 PTZ00243 ABC transporter; Prov 99.9 5E-23 1.1E-27 220.3 10.4 170 73-257 677-870 (1560)
363 PF00005 ABC_tran: ABC transpo 99.9 5.5E-24 1.2E-28 170.8 1.5 120 73-210 2-136 (137)
364 KOG0061 Transporter, ABC super 99.9 3.3E-22 7.2E-27 196.8 12.3 186 73-261 47-263 (613)
365 cd03270 ABC_UvrA_I The excisio 99.9 3.9E-22 8.5E-27 174.0 10.1 164 73-239 12-203 (226)
366 KOG0054 Multidrug resistance-a 99.9 8.8E-22 1.9E-26 203.6 10.6 193 48-258 1135-1363(1381)
367 COG5265 ATM1 ABC-type transpor 99.9 1.2E-22 2.5E-27 185.5 3.6 191 52-258 263-487 (497)
368 cd03278 ABC_SMC_barmotin Barmo 99.9 2.1E-21 4.5E-26 165.9 10.5 142 73-239 14-180 (197)
369 cd02025 PanK Pantothenate kina 99.9 7.8E-21 1.7E-25 165.0 13.4 187 83-285 1-210 (220)
370 KOG0054 Multidrug resistance-a 99.8 9.7E-22 2.1E-26 203.3 6.4 188 47-257 514-731 (1381)
371 COG0572 Udk Uridine kinase [Nu 99.8 2.4E-20 5.2E-25 159.0 13.5 182 80-285 7-190 (218)
372 KOG0927 Predicted transporter 99.8 2.2E-20 4.9E-25 174.9 11.9 179 47-240 385-571 (614)
373 PTZ00301 uridine kinase; Provi 99.8 1.1E-19 2.4E-24 156.4 14.9 184 82-285 4-189 (210)
374 COG4615 PvdE ABC-type sideroph 99.8 1.2E-20 2.6E-25 171.1 8.9 178 50-249 321-529 (546)
375 COG4138 BtuD ABC-type cobalami 99.8 1.1E-20 2.4E-25 154.6 6.8 172 76-258 20-222 (248)
376 TIGR00554 panK_bact pantothena 99.8 9.3E-20 2E-24 163.6 12.9 192 79-286 60-279 (290)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.8 1.7E-19 3.7E-24 159.7 9.0 157 81-240 25-234 (251)
378 KOG0066 eIF2-interacting prote 99.8 2.5E-19 5.5E-24 164.4 9.9 184 38-240 573-766 (807)
379 COG1245 Predicted ATPase, RNas 99.8 1.8E-19 3.8E-24 166.1 8.4 171 49-240 340-521 (591)
380 PF00485 PRK: Phosphoribulokin 99.8 1E-19 2.2E-24 155.0 5.2 185 83-286 1-189 (194)
381 PRK09270 nucleoside triphospha 99.8 5.5E-18 1.2E-22 148.1 15.1 190 79-286 31-222 (229)
382 KOG2702 Predicted panthothenat 99.8 1.7E-18 3.7E-23 146.9 10.7 204 78-287 116-323 (323)
383 cd02023 UMPK Uridine monophosp 99.8 9.4E-18 2E-22 143.2 14.6 178 83-286 1-182 (198)
384 cd03271 ABC_UvrA_II The excisi 99.8 6.4E-19 1.4E-23 156.3 7.6 161 73-240 12-237 (261)
385 cd03272 ABC_SMC3_euk Eukaryoti 99.8 1E-18 2.2E-23 153.7 7.9 63 176-239 152-224 (243)
386 PRK05439 pantothenate kinase; 99.8 7.6E-18 1.6E-22 152.3 12.9 189 81-285 86-298 (311)
387 COG4178 ABC-type uncharacteriz 99.8 6.3E-18 1.4E-22 162.9 12.7 173 49-239 390-578 (604)
388 TIGR00235 udk uridine kinase. 99.8 1.4E-17 2.9E-22 143.4 13.3 183 79-285 4-188 (207)
389 cd03279 ABC_sbcCD SbcCD and ot 99.7 2.5E-18 5.5E-23 148.6 7.6 145 79-240 26-198 (213)
390 PRK05480 uridine/cytidine kina 99.7 5.8E-17 1.3E-21 139.6 15.3 183 79-285 4-188 (209)
391 COG1129 MglA ABC-type sugar tr 99.7 5.6E-18 1.2E-22 160.3 9.5 190 47-248 259-481 (500)
392 PLN02318 phosphoribulokinase/u 99.7 1.4E-17 3.1E-22 159.7 12.0 171 82-284 66-238 (656)
393 KOG0062 ATPase component of AB 99.7 1.1E-17 2.3E-22 156.3 9.6 171 52-240 81-260 (582)
394 KOG0065 Pleiotropic drug resis 99.7 6.9E-18 1.5E-22 172.0 7.4 185 62-254 802-1018(1391)
395 cd03240 ABC_Rad50 The catalyti 99.7 2.8E-17 6.2E-22 141.1 9.3 143 76-239 18-187 (204)
396 cd03274 ABC_SMC4_euk Eukaryoti 99.7 2.3E-18 4.9E-23 148.8 2.2 157 60-238 13-193 (212)
397 COG4170 SapD ABC-type antimicr 99.7 1.7E-17 3.6E-22 139.7 6.9 207 50-257 2-248 (330)
398 KOG0927 Predicted transporter 99.7 6.6E-17 1.4E-21 151.8 10.3 188 50-256 74-308 (614)
399 cd03276 ABC_SMC6_euk Eukaryoti 99.7 1.8E-16 3.9E-21 135.5 10.9 142 76-240 17-181 (198)
400 PRK00349 uvrA excinuclease ABC 99.7 4.4E-16 9.5E-21 158.8 12.5 93 165-257 810-927 (943)
401 PLN02348 phosphoribulokinase 99.6 2.3E-15 5E-20 139.0 14.4 190 82-284 50-243 (395)
402 KOG0060 Long-chain acyl-CoA tr 99.6 5.4E-16 1.2E-20 146.7 10.4 183 47-240 429-632 (659)
403 COG3845 ABC-type uncharacteriz 99.6 5.5E-16 1.2E-20 144.7 10.1 201 46-254 252-489 (501)
404 cd02029 PRK_like Phosphoribulo 99.6 5.6E-15 1.2E-19 130.0 15.5 181 83-283 1-200 (277)
405 KOG0062 ATPase component of AB 99.6 2.9E-16 6.3E-21 146.8 7.7 179 47-240 358-544 (582)
406 cd03275 ABC_SMC1_euk Eukaryoti 99.6 3.4E-16 7.5E-21 138.3 7.0 149 83-239 24-223 (247)
407 PRK00635 excinuclease ABC subu 99.6 7.4E-16 1.6E-20 163.8 8.8 116 141-257 763-906 (1809)
408 cd02026 PRK Phosphoribulokinas 99.6 1E-14 2.2E-19 130.6 14.6 173 83-283 1-175 (273)
409 COG1245 Predicted ATPase, RNas 99.6 1.5E-15 3.2E-20 140.4 7.2 168 57-240 80-278 (591)
410 cd02028 UMPK_like Uridine mono 99.6 8.3E-15 1.8E-19 123.3 10.8 176 83-284 1-179 (179)
411 COG1072 CoaA Panthothenate kin 99.6 9.1E-15 2E-19 128.0 11.1 177 79-271 80-257 (283)
412 COG2401 ABC-type ATPase fused 99.6 4.3E-15 9.3E-20 136.0 8.5 159 70-240 397-573 (593)
413 PRK07429 phosphoribulokinase; 99.6 7.7E-14 1.7E-18 127.7 15.1 170 82-285 9-186 (327)
414 KOG2355 Predicted ABC-type tra 99.6 1.1E-14 2.5E-19 122.2 8.4 186 46-240 8-213 (291)
415 TIGR00630 uvra excinuclease AB 99.5 1.6E-14 3.4E-19 147.3 10.4 91 165-255 808-923 (924)
416 KOG0064 Peroxisomal long-chain 99.5 5E-15 1.1E-19 138.9 5.0 148 73-240 499-674 (728)
417 PRK15453 phosphoribulokinase; 99.5 2.2E-13 4.7E-18 120.9 14.7 186 80-283 4-206 (290)
418 KOG0065 Pleiotropic drug resis 99.5 3.2E-13 7E-18 138.3 12.7 185 73-259 132-353 (1391)
419 cd02024 NRK1 Nicotinamide ribo 99.4 1.1E-12 2.3E-17 111.0 11.6 162 83-269 1-177 (187)
420 cd03283 ABC_MutS-like MutS-lik 99.4 4.1E-13 8.8E-18 114.9 7.9 126 76-240 20-153 (199)
421 COG0178 UvrA Excinuclease ATPa 99.4 2.4E-12 5.1E-17 126.4 10.7 92 166-257 803-919 (935)
422 PRK06696 uridine kinase; Valid 99.4 4.6E-12 1E-16 110.3 10.9 195 68-286 7-211 (223)
423 cd03280 ABC_MutS2 MutS2 homolo 99.4 4.5E-13 9.8E-18 114.7 4.3 123 73-238 19-154 (200)
424 cd03277 ABC_SMC5_euk Eukaryoti 99.3 2.6E-12 5.5E-17 111.1 7.8 65 176-240 120-197 (213)
425 KOG0063 RNAse L inhibitor, ABC 99.3 2.8E-12 6E-17 118.1 6.5 154 73-240 353-522 (592)
426 PRK00635 excinuclease ABC subu 99.3 7E-12 1.5E-16 134.0 10.5 96 162-257 1676-1796(1809)
427 cd03239 ABC_SMC_head The struc 99.3 1.3E-11 2.8E-16 103.8 9.9 57 183-239 95-162 (178)
428 cd03227 ABC_Class2 ABC-type Cl 99.3 8.2E-12 1.8E-16 103.4 8.3 120 76-240 16-146 (162)
429 KOG0066 eIF2-interacting prote 99.3 1.4E-11 3.1E-16 113.8 9.8 172 52-240 265-474 (807)
430 cd03243 ABC_MutS_homologs The 99.3 5.7E-12 1.2E-16 108.0 5.6 125 76-240 24-156 (202)
431 cd03282 ABC_MSH4_euk MutS4 hom 99.2 1.1E-11 2.3E-16 106.5 3.9 125 73-240 20-156 (204)
432 PRK07667 uridine kinase; Provi 99.2 1.3E-10 2.7E-15 99.0 10.4 172 82-283 18-193 (193)
433 cd03241 ABC_RecN RecN ATPase i 99.1 7.5E-11 1.6E-15 105.9 7.3 57 182-238 170-236 (276)
434 cd03285 ABC_MSH2_euk MutS2 hom 99.1 2E-11 4.4E-16 106.2 2.3 123 73-237 21-155 (222)
435 PLN02796 D-glycerate 3-kinase 99.1 1.3E-09 2.8E-14 99.7 13.5 172 83-269 102-314 (347)
436 cd03281 ABC_MSH5_euk MutS5 hom 99.1 8.1E-10 1.8E-14 95.5 10.2 125 76-240 22-159 (213)
437 PLN03046 D-glycerate 3-kinase; 99.0 5.6E-09 1.2E-13 97.4 13.6 175 81-270 212-427 (460)
438 cd00820 PEPCK_HprK Phosphoenol 99.0 2.2E-10 4.8E-15 87.8 3.6 63 73-149 6-77 (107)
439 PRK08233 hypothetical protein; 98.9 8.6E-09 1.9E-13 86.2 11.3 79 202-285 79-161 (182)
440 PRK06547 hypothetical protein; 98.9 1.2E-08 2.6E-13 85.3 12.0 149 81-283 15-171 (172)
441 cd01128 rho_factor Transcripti 98.9 3.4E-09 7.3E-14 93.6 8.6 160 72-240 7-199 (249)
442 smart00534 MUTSac ATPase domai 98.9 3.5E-10 7.5E-15 95.7 0.7 62 177-239 56-126 (185)
443 KOG0063 RNAse L inhibitor, ABC 98.9 9.2E-10 2E-14 101.7 2.8 162 75-240 94-278 (592)
444 TIGR02858 spore_III_AA stage I 98.9 8.8E-09 1.9E-13 92.0 8.8 37 82-121 112-148 (270)
445 TIGR01069 mutS2 MutS2 family p 98.9 1.3E-09 2.8E-14 110.2 3.7 124 76-239 316-449 (771)
446 COG4240 Predicted kinase [Gene 98.9 1.5E-08 3.3E-13 86.6 9.3 126 77-215 46-177 (300)
447 cd03284 ABC_MutS1 MutS1 homolo 98.8 9.7E-09 2.1E-13 89.0 8.2 32 73-105 22-54 (216)
448 cd03242 ABC_RecF RecF is a rec 98.8 4.2E-09 9E-14 94.3 6.1 60 180-239 181-252 (270)
449 PRK06995 flhF flagellar biosyn 98.8 1.1E-08 2.3E-13 98.0 8.0 97 76-191 251-349 (484)
450 cd03287 ABC_MSH3_euk MutS3 hom 98.8 3.1E-08 6.8E-13 86.1 9.9 43 73-118 22-66 (222)
451 cd01130 VirB11-like_ATPase Typ 98.8 1.1E-08 2.3E-13 86.6 6.3 41 76-119 20-60 (186)
452 PF02463 SMC_N: RecF/RecN/SMC 98.8 9E-09 1.9E-13 89.1 5.8 60 181-240 135-204 (220)
453 PRK00349 uvrA excinuclease ABC 98.7 8.7E-09 1.9E-13 105.9 4.5 90 168-257 472-585 (943)
454 TIGR03238 dnd_assoc_3 dnd syst 98.7 7.2E-09 1.6E-13 98.1 3.3 44 73-121 23-68 (504)
455 TIGR00630 uvra excinuclease AB 98.6 3.7E-08 7.9E-13 101.2 5.1 81 176-256 481-582 (924)
456 PRK00409 recombination and DNA 98.6 2.1E-08 4.6E-13 101.8 2.0 120 80-240 326-455 (782)
457 TIGR02788 VirB11 P-type DNA tr 98.6 8.7E-07 1.9E-11 80.9 12.1 37 76-115 139-175 (308)
458 KOG2878 Predicted kinase [Gene 98.5 1.3E-06 2.9E-11 73.5 11.1 175 83-274 33-255 (282)
459 KOG4203 Armadillo/beta-Catenin 98.5 3.4E-07 7.3E-12 87.7 8.6 192 78-286 41-237 (473)
460 PRK07196 fliI flagellum-specif 98.5 1.7E-07 3.7E-12 88.7 5.7 77 73-154 147-240 (434)
461 PRK14721 flhF flagellar biosyn 98.5 4.7E-07 1E-11 85.5 8.1 96 78-192 188-285 (420)
462 PRK06002 fliI flagellum-specif 98.5 2.1E-07 4.4E-12 88.2 5.5 76 51-134 139-230 (450)
463 cd03286 ABC_MSH6_euk MutS6 hom 98.4 6.5E-07 1.4E-11 77.6 7.5 33 73-105 21-54 (218)
464 PRK08533 flagellar accessory p 98.4 1.2E-06 2.6E-11 76.6 8.5 30 77-106 20-50 (230)
465 PTZ00132 GTP-binding nuclear p 98.4 7.8E-08 1.7E-12 82.9 0.3 46 180-225 148-200 (215)
466 cd02020 CMPK Cytidine monophos 98.4 2.7E-06 5.9E-11 68.3 9.2 60 225-284 83-146 (147)
467 PRK06315 type III secretion sy 98.4 3.5E-07 7.6E-12 86.7 4.4 99 73-174 156-276 (442)
468 PRK13695 putative NTPase; Prov 98.3 2.9E-07 6.2E-12 76.9 3.1 129 83-238 2-139 (174)
469 PF13555 AAA_29: P-loop contai 98.3 1.2E-06 2.6E-11 60.3 4.3 31 76-106 17-48 (62)
470 PRK09825 idnK D-gluconate kina 98.2 9.1E-07 2E-11 74.2 4.0 27 80-106 2-28 (176)
471 PRK06793 fliI flagellum-specif 98.2 6.5E-07 1.4E-11 84.7 3.0 107 73-215 148-261 (432)
472 PRK13949 shikimate kinase; Pro 98.2 1.5E-05 3.2E-10 66.4 10.9 24 83-106 3-26 (169)
473 PRK08118 topology modulation p 98.2 3.2E-05 7E-10 64.3 12.7 24 83-106 3-26 (167)
474 PRK00300 gmk guanylate kinase; 98.2 1.4E-06 3.1E-11 74.4 4.3 28 79-106 3-30 (205)
475 KOG3308 Uncharacterized protei 98.2 8.4E-06 1.8E-10 68.7 8.4 133 83-243 6-146 (225)
476 PRK10078 ribose 1,5-bisphospho 98.2 1.2E-06 2.5E-11 74.1 3.4 26 81-106 2-27 (186)
477 PRK05057 aroK shikimate kinase 98.2 3.3E-05 7.1E-10 64.5 12.0 26 81-106 4-29 (172)
478 COG3910 Predicted ATPase [Gene 98.2 8.9E-06 1.9E-10 68.1 8.0 141 82-240 38-193 (233)
479 PRK01889 GTPase RsgA; Reviewed 98.2 2.8E-06 6E-11 79.1 5.7 57 77-136 191-252 (356)
480 PRK09862 putative ATP-dependen 98.1 3.8E-06 8.2E-11 81.2 5.4 59 55-121 188-247 (506)
481 PRK14732 coaE dephospho-CoA ki 98.1 8.8E-06 1.9E-10 69.4 7.0 72 202-286 104-175 (196)
482 cd01124 KaiC KaiC is a circadi 98.1 2E-05 4.4E-10 65.9 9.1 123 84-237 2-142 (187)
483 TIGR00152 dephospho-CoA kinase 98.1 3.8E-05 8.3E-10 64.9 10.8 57 221-285 120-176 (188)
484 PRK14723 flhF flagellar biosyn 98.1 8.7E-06 1.9E-10 81.8 7.9 81 76-173 180-262 (767)
485 PRK14730 coaE dephospho-CoA ki 98.1 1E-05 2.2E-10 69.0 7.1 71 202-285 108-178 (195)
486 PRK07721 fliI flagellum-specif 98.1 2.6E-06 5.7E-11 81.0 3.4 43 73-118 150-192 (438)
487 PRK05922 type III secretion sy 98.0 1.3E-06 2.7E-11 82.7 1.0 41 73-116 149-189 (434)
488 PRK10416 signal recognition pa 98.0 3.7E-06 7.9E-11 77.0 3.9 36 79-117 112-147 (318)
489 PRK07261 topology modulation p 98.0 2.4E-05 5.3E-10 65.2 8.5 24 83-106 2-25 (171)
490 PRK07594 type III secretion sy 98.0 2.5E-06 5.4E-11 80.8 2.4 61 51-119 129-190 (433)
491 cd01136 ATPase_flagellum-secre 98.0 3.2E-06 7E-11 77.4 3.0 42 73-117 61-102 (326)
492 TIGR02322 phosphon_PhnN phosph 98.0 5.8E-06 1.3E-10 69.1 4.2 26 81-106 1-26 (179)
493 PRK14731 coaE dephospho-CoA ki 98.0 3.3E-05 7.1E-10 66.5 8.8 71 202-285 116-186 (208)
494 TIGR03263 guanyl_kin guanylate 98.0 4.7E-06 1E-10 69.6 3.1 26 81-106 1-26 (180)
495 PRK03846 adenylylsulfate kinas 98.0 4.8E-06 1E-10 71.0 3.1 29 78-106 21-49 (198)
496 COG0178 UvrA Excinuclease ATPa 98.0 7.8E-06 1.7E-10 81.3 4.5 84 175-258 474-578 (935)
497 PRK08149 ATP synthase SpaL; Va 97.9 5.6E-06 1.2E-10 78.3 3.4 45 73-120 143-190 (428)
498 cd02022 DPCK Dephospho-coenzym 97.9 1.9E-05 4.1E-10 66.3 6.1 71 202-285 104-174 (179)
499 PRK00081 coaE dephospho-CoA ki 97.9 2.9E-05 6.2E-10 66.1 6.9 71 202-285 107-177 (194)
500 PRK13477 bifunctional pantoate 97.9 8.9E-06 1.9E-10 78.7 4.0 52 57-114 265-317 (512)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-42 Score=291.44 Aligned_cols=198 Identities=19% Similarity=0.208 Sum_probs=171.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.+.||+..++ +++ ++|++||+++|+||||||||||+|+|+++.+ |++|+|.++|...
T Consensus 1 ~mi~i~~l~K~fg~~~VL-----kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~ 72 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVL-----KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDI 72 (240)
T ss_pred CeEEEEeeeEEeCCeEEe-----cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhH
Confidence 468899999999999999 999 9999999999999999999999999999999 9999999998532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.+|++||+ |.+++ ++|+.+|+.+... ..+.++++..+++.++|+.++ +..+.++.+|||||||||+||+|
T Consensus 73 ~~~R~~vGmVFQ~-fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA 150 (240)
T COG1126 73 LKLRRKVGMVFQQ-FNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA 150 (240)
T ss_pred HHHHHhcCeeccc-ccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence 3458999999 44443 5999999998654 456677778888999999999 56788999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+.+|+++++|+++..||+ ++++.+.++.+.+ ++|||++.++.+ |++ |++++.|+|+++..
T Consensus 151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~ 225 (240)
T COG1126 151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225 (240)
T ss_pred HcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhc
Confidence 9999999999999999999 4555556666554 699999999988 776 88999998888643
No 2
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-41 Score=286.81 Aligned_cols=197 Identities=14% Similarity=0.129 Sum_probs=171.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+.+.++ +++ ++|++||+++++|||||||||++|||+++++ |++|+|+++|.+..
T Consensus 1 MI~~~nvsk~y~~~~av-----~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~ 72 (309)
T COG1125 1 MIEFENVSKRYGNKKAV-----DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVE 72 (309)
T ss_pred CceeeeeehhcCCceee-----eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHH
Confidence 57899999999999999 999 9999999999999999999999999999999 99999999997653
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc----CCCCCCCCCCcccCCchhhhhhh
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.+||+-|....+++ +|+.+|+.......+.+++...+++.++++.++. ..++++.+|||||+|||.+++|+
T Consensus 73 LRr~IGYviQqigLFPh--~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 73 LRRKIGYVIQQIGLFPH--LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HHHhhhhhhhhcccCCC--ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 459999998665554 9999999999888887777778889999999883 56789999999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHH---hhc-CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSS---MFD-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~---~~~-~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|.++++|+|+-.+|+ .+++++.+ .+. +.||||||++++.. |++ |+++..++|+++..
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999 33333333 333 34799999999988 665 89999999998764
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-41 Score=305.90 Aligned_cols=200 Identities=16% Similarity=0.163 Sum_probs=170.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+.++++++++.||+..++ +++ +.|++||+++|+||||||||||+++|+|+.. |++|+|.++|.+.
T Consensus 2 ~~~~l~i~~v~k~yg~~~av-----~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 2 PKPALEIRNVSKSFGDFTAV-----DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVP 73 (352)
T ss_pred CCceEEEEeeeeecCCeeEE-----ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCC
Confidence 35688999999999999999 999 9999999999999999999999999999999 9999999998653
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
++.+++|||+ |.+++ +|||.+|++|++...+. ++++..+++.++++.++ ...++++.+|||||||||++|+||
T Consensus 74 p~kR~ig~VFQ~-YALFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL 151 (352)
T COG3842 74 PEKRPIGMVFQS-YALFP-HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL 151 (352)
T ss_pred hhhcccceeecC-cccCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHh
Confidence 4569999999 44443 69999999999984443 33445678999999887 567889999999999999999999
Q ss_pred ccCccEEEEcCcccCCChhh----HHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~~----~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|++|++|+|+.-||..+ ..+++++... .||||||.++++. |++ |++...|+|+|++.
T Consensus 152 ~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred hcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhh
Confidence 99999999999999999843 3444444332 3799999999998 666 88999999999864
No 4
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-40 Score=285.39 Aligned_cols=181 Identities=17% Similarity=0.169 Sum_probs=159.4
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC---CCce
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDV 125 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~---~~~~ 125 (287)
..+.++++++.|+...++ +++ ++|.+||+++|+||||||||||+|+|+|+.+ |++|+|.++|.. ....
T Consensus 2 ~~l~i~~v~~~f~~~~vl-----~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~ 73 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVL-----EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPD 73 (248)
T ss_pred ceEEEEeeEEEeCceEEe-----ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCC
Confidence 457788999999998888 999 9999999999999999999999999999999 999999998864 3456
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|+||+...++ ++|+.+|+.++....+.++++..+++.++|+.++ ...++++.+|||||||||+||+|++..|++
T Consensus 74 ~~~vFQ~~~LlP--W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 74 IGYVFQEDALLP--WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred EEEEeccCcccc--hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 999999976544 5999999999988877666667778999999998 577889999999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
|++|||+.-||+ .+++.+.+++.. ++|||||.+++..
T Consensus 152 LLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 152 LLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred EEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 999999999999 555666666543 5799999999877
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.5e-40 Score=287.31 Aligned_cols=197 Identities=16% Similarity=0.168 Sum_probs=167.1
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|... .++ +++ +.|++|+|+||+|.||||||||+|+|+++.+ |++|+|+++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al-----~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTAL-----DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccCCCCceeee-----ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEeccc
Confidence 46788899988873 344 777 9999999999999999999999999999999 9999999999542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
++.||++||. |.+.. .+||++|+++++...+.++++..+++.++|+.++ +..+.++.+|||||||||
T Consensus 73 l~~~~Lr~~R~~IGMIFQh-FnLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 73 LSEAELRQLRQKIGMIFQH-FNLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred CChHHHHHHHhhccEEecc-ccccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH
Confidence 3569999999 44443 3799999999999999888888999999999998 567789999999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChh----hHHHHH---HhhcCc-eEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVS---SMFDEK-WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~----~~~~l~---~~~~~~-i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+||+||+.+|++|+.||.+..||++ +++.|. +.+..+ ++|||.|+++.. |+. |++++.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999993 333333 333333 599999999988 665 9999999888865
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 231 ~ 231 (339)
T COG1135 231 A 231 (339)
T ss_pred c
Confidence 3
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.4e-39 Score=277.29 Aligned_cols=201 Identities=18% Similarity=0.225 Sum_probs=172.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+.++++++++++++||++.++ +++ +.|++||+++|+||||||||||+|.|.|+++ |++|+|++.|.+.
T Consensus 4 ~~~~~I~vr~v~~~fG~~~Il-----d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~l 75 (263)
T COG1127 4 SPEPLIEVRGVTKSFGDRVIL-----DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQL 75 (263)
T ss_pred CCcceEEEeeeeeecCCEEEe-----cCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhcc
Confidence 457899999999999999999 999 9999999999999999999999999999999 9999999998764
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qr 190 (287)
.+++|++||.+-.+.. +||+||+.+..+.+ .++++...+.+...|+.+|.. .++++.+|||||++|
T Consensus 76 s~~~~~~ir~r~GvlFQ~gALFss--ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR 153 (263)
T COG1127 76 SEEELYEIRKRMGVLFQQGALFSS--LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR 153 (263)
T ss_pred CHHHHHHHHhheeEEeeccccccc--cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH
Confidence 2459999999765554 99999999977655 456666667778888888843 568899999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh-------hhHHHHHHhhcC-ceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG-------GVWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe-------~~~~~l~~~~~~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+++|+|++.+|.+++.|||+..||+ +++..+++.+.. .++||||++.+.. |++ |++++.|+++++
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999 444555555544 4699999999987 555 889999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
.+
T Consensus 234 ~~ 235 (263)
T COG1127 234 LA 235 (263)
T ss_pred Hh
Confidence 65
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-39 Score=294.66 Aligned_cols=198 Identities=17% Similarity=0.156 Sum_probs=170.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
..++++++++.||+..++ +++ +.++.||+++|+||||||||||||+|+|+.+ |++|+|.++|.+.
T Consensus 2 ~~i~l~~v~K~yg~~~~l-----~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~ 73 (338)
T COG3839 2 AELELKNVRKSFGSFEVL-----KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE 73 (338)
T ss_pred cEEEEeeeEEEcCCceee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence 357899999999987677 888 9999999999999999999999999999999 9999999998653
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++++||+.. +++ +|||++|+.|+++..+.++++..+++.++.+.++ ...++++.+|||||||||++|+|++.+
T Consensus 74 ~R~iamVFQ~yA-LyP-hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~ 151 (338)
T COG3839 74 KRGIAMVFQNYA-LYP-HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRK 151 (338)
T ss_pred HCCEEEEeCCcc-ccC-CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcC
Confidence 346999999944 433 5999999999999999888888889999988887 567889999999999999999999999
Q ss_pred ccEEEEcCcccCCChhh----HHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDGGV----WKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe~~----~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+++++|||+.-||..+ ..++.++.+ +.||||||..+++. |++ |++...|+|.|++.
T Consensus 152 P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 152 PKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred CCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999833 333333332 35899999999998 655 88889999999875
No 8
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5e-39 Score=281.15 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=170.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++++|+++.++ +++ +++++|++++|+||||||||||+|+|+|+++ |.+|+|.++|.+.
T Consensus 2 ~L~~~~ls~~y~~~~il-----~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~ke 73 (258)
T COG1120 2 MLEVENLSFGYGGKPIL-----DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKE 73 (258)
T ss_pred eeEEEEEEEEECCeeEE-----ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHH
Confidence 57889999999999999 999 9999999999999999999999999999999 9999999999764
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.+.++|+||.+...+ .+||+|.+.+++.-+ +.+...|.+.+.+.|+.++ ...++.+.+||||||||+.||+
T Consensus 74 lAk~ia~vpQ~~~~~~--~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 74 LAKKLAYVPQSPSAPF--GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred HhhhEEEeccCCCCCC--CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 346999999975433 489999999875432 2234556777888999888 5678899999999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|++.++++|++|||+..||. ++++.++++.++ +|++.||++.+.+ +++ |++++.|+|++++..
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 99999999999999999999 667777777633 4799999999988 555 899999999998643
No 9
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-39 Score=279.74 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=166.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++|+++.|+.+.++ +++ +++++|++++|+||||||||||+|+|+|+++ |.+|+|.+.+...
T Consensus 2 ~~~i~v~nl~v~y~~~~vl-----~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~ 73 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVL-----EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRK 73 (254)
T ss_pred CcEEEEeeeEEEECCEeee-----eccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEcccccccccc
Confidence 4689999999999976788 999 9999999999999999999999999999999 9999998877542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHH----hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~----~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
..+|||+||....-+...+||+|.+..+.. +++.+.+.+.+.+.++|++++ ...++++.+|||||+|||.||+|
T Consensus 74 ~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA 153 (254)
T COG1121 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA 153 (254)
T ss_pred CCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence 357999999642222223899999887632 223345567888999999998 67789999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh---hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~~ 257 (287)
|+.+|++|++|||+..+|. .+.+.|.++.++ +++||||++.+.. +++ +++++.|+++++..
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~~~G~~~~~~~ 227 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLT 227 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeEeccChhhccC
Confidence 9999999999999999999 344444444443 4599999999998 665 77889999999765
No 10
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=271.40 Aligned_cols=203 Identities=14% Similarity=0.106 Sum_probs=169.1
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++|+++.|+.+.... .+.+++ +.+.+||++||+|+||||||||+++|+|+.+ |++|+|.++|...
T Consensus 2 ~~l~v~nl~~~y~~~~~~~-~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~ 77 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAF-HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA 77 (252)
T ss_pred ceEEEeceEEEecCCcchh-hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence 5788999999999888222 122888 9999999999999999999999999999999 9999999998531
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.+.++|||++.-.+|.+|+.+.+..+....+.++ ..+++.++|+.++ ...++++.+|||||+||++||+|
T Consensus 78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA 155 (252)
T COG1124 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155 (252)
T ss_pred hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence 345999999999988899999999988877755543 3445889999998 45678999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
++.+|++||+||++..||. ++|+.+.++.+. .+|||||+..+.. |++ |++++.++..++...
T Consensus 156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred hccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999 344444444332 3699999999988 665 899999988887654
No 11
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-38 Score=276.17 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=165.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC---CC----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---KP---- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~---~~---- 122 (287)
.+.++++.+.|+...++ +++ +.|+.||.++|+||||||||||+++|+|++. |++|.|.++|. +.
T Consensus 2 ~i~i~~~~~~~~~~~a~-----~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~ 73 (345)
T COG1118 2 SIRINNVKKRFGAFGAL-----DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLA 73 (345)
T ss_pred ceeehhhhhhccccccc-----ccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccc
Confidence 46678899999999998 888 9999999999999999999999999999999 99999999987 32
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CC-CCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~-~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.||+++|+.. ++ ++|||.+|++|++.... .+ ......++.++|+.+. ...++++.+|||||+|||++|+|
T Consensus 74 ~~~R~VGfvFQ~YA-LF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA 151 (345)
T COG1118 74 VRDRKVGFVFQHYA-LF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA 151 (345)
T ss_pred hhhcceeEEEechh-hc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence 346999999944 33 36999999999886552 22 3455678888888766 56788999999999999999999
Q ss_pred hccCccEEEEcCcccCCChhhHHHHHHh----hcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGGVWKDVSSM----FDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~~~~~l~~~----~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++..|++|++|||+-.||..+.+.++.. .+. ++|||||.+++++ |++ |++...|+++|++.
T Consensus 152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred hhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999999999555555443 332 4799999999998 666 89999999999854
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-37 Score=263.51 Aligned_cols=204 Identities=15% Similarity=0.130 Sum_probs=171.9
Q ss_pred CccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++.| +++.++ +++ +.|.+||+++|+|+||||||||+|+|+|+.. |++|+|+++|...
T Consensus 2 ~~i~~~nl~k~yp~~~~aL-----~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQAL-----KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKG 73 (258)
T ss_pred ceEEEeeeeeecCCCceee-----eeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccch
Confidence 578999999999 889999 999 9999999999999999999999999999999 9999999998543
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHH--------hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcc
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--------RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHG 186 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~--------~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG 186 (287)
+..+||+||+....+ .++|.+|+..+.. .++....++...+.+.|++++ +....+..+||||
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~--r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVP--RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred HHHHHHHHhceeEeccCCccc--ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 235999999955444 3899999987543 345566677888899999999 4566788899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+|||+||+||+.+|++++.|||+.-||+ .+++.+++... . +|+..|+++.+.+ |++ ||++.+|+
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~ 231 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCC
Confidence 99999999999999999999999999999 45555555543 2 3577899999998 777 89999999
Q ss_pred hHHHHHHHHHhc
Q 023126 252 PPDVAKWRIEYN 263 (287)
Q Consensus 252 ~~ev~~~~~~~~ 263 (287)
+.++....+...
T Consensus 232 ~~el~~~~~~~i 243 (258)
T COG3638 232 ASELTDEALDEI 243 (258)
T ss_pred hhhhhHHHHHHH
Confidence 998777666544
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6e-37 Score=252.47 Aligned_cols=189 Identities=18% Similarity=0.117 Sum_probs=160.4
Q ss_pred ccccCcccccccccc-hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKTSL-KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+... ++ +++ +.+++||++-|+||||||||||+|+|.+..+ |++|+|.+++.+.
T Consensus 1 mI~f~~V~k~Y~~g~~aL-----~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~ 72 (223)
T COG2884 1 MIRFENVSKAYPGGREAL-----RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGR 72 (223)
T ss_pred CeeehhhhhhcCCCchhh-----hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccc
Confidence 577899999998664 77 888 9999999999999999999999999999999 9999999988653
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
++.||++|||.-.++. +|++||+++.+...|.+.+...+++.+.|+.++ ...+..+.+||||||||++||+
T Consensus 73 ~iP~LRR~IGvVFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIAR 150 (223)
T COG2884 73 EIPFLRRQIGVVFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIAR 150 (223)
T ss_pred ccchhhheeeeEeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHH
Confidence 3569999999555544 899999999999999888888889999999998 4456678899999999999999
Q ss_pred hhccCccEEEEcCcccCCChhhHHHHHHhhc-------CceEEEeCHHHHHH---HHh----hccccC
Q 023126 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-------EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~~~~~l~~~~~-------~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|++.+|.+|+.|||+--||+....++.+++. .+++.|||.+.+.. |++ ||++.+
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 9999999999999999999954444444443 24689999999887 554 666543
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-36 Score=274.05 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=172.4
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++.++++.|+ .+.++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~k~~~~~~~~l-----~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~ 74 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTAL-----DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA 74 (293)
T ss_pred ceeeecceEEEeCCCCEEE-----eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence 4577899999999 69999 999 9999999999999999999999999999999 9999999988543
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~ 198 (287)
++.++|++|++.+++ .+|++|++.+....++.+...+.+++.++++.++... ++++..||+|||||+.||.|++
T Consensus 75 ~~~~~igy~~~~~~~~~--~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 75 KVRRRIGYVPQEPSLYP--ELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHhheEEEccCCCCCc--cccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 345999999977444 4999999999998887665556678899999999554 6789999999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
.+|+++++|||+..||+ .+++.|+++.+. ++++||.++++.. |++ |++++.|+++++...
T Consensus 153 ~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999 677777777763 3488999999988 454 899999988886544
No 15
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-37 Score=270.47 Aligned_cols=180 Identities=19% Similarity=0.225 Sum_probs=157.6
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------CceeEEEeCCCCCCCcc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDVATVLPMDGFHLYLS 139 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------~~~i~~v~qd~~~~~~~ 139 (287)
+++ +.++.|||+.|.|-||||||||+++|+++++ |++|+|.++|.+. ++.++++||.-..++
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie---pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP-- 119 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE---PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP-- 119 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc--
Confidence 555 9999999999999999999999999999999 9999999998763 345999999844333
Q ss_pred cCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh--
Q 023126 140 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-- 215 (287)
Q Consensus 140 ~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe-- 215 (287)
++||.+|..|++...|.++++..+++.++|+.++ ...++++.+|||||||||.+|+|++.+|.+|++|+++..||+
T Consensus 120 hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 120 HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH
Confidence 5899999999999999999888999999999998 567789999999999999999999999999999999999999
Q ss_pred --hhHHHHHHh----hcCceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 216 --GVWKDVSSM----FDEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 216 --~~~~~l~~~----~~~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|.++ .++++|||||++++++ |+. |+++..|+|+|++.
T Consensus 200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 444444444 3345799999999999 665 89999999999864
No 16
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-37 Score=281.76 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=167.3
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
|+.+++++++++++.|++..++ +++ +.+++||+++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 1 MTQKNFVVLKNITKRFGSNTVI-----DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTH 72 (351)
T ss_pred CCCCcEEEEEeEEEEECCeEEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCC
Confidence 3456789999999999987777 888 9999999999999999999999999999999 9999999988542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ ++|+.+|+.++...++.+..+..+++.++++.++ ...++++.+|||||+||+++|+|
T Consensus 73 ~~~~~r~ig~vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 73 RSIQQRDICMVFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred CCHHHCCEEEEeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 356999999965444 4899999999876655444444567788888877 34578889999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|++|++|+++..||.. +++.++++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999993 3444444432 24799999999877 554 89999999998754
No 17
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-36 Score=262.72 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=172.0
Q ss_pred CccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
++++++++++.|.++ .++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|.|.++|.+.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l-----~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 2 RMIEAENLSFRYPGRKAAL-----KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred ceEEEEEEEEEcCCCceee-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhh
Confidence 467888999999877 555 788 9999999999999999999999999999999 9999998888642
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.+||++|++...+.. -||.+.++|+..+.+.+.++..+++.++++.++ ...++++.+|||||+|||+||.+
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~v 152 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGV 152 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHH
Confidence 45699999998655442 589999999999999887777788999999888 45678888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
++.+|++|++||++..||. .+++.+.++... .|++|||++.+.. |++ |+++.+|+|.++..+.
T Consensus 153 La~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 153 LAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999999999999999 455555555443 5799999999988 554 8999999998887654
No 18
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-36 Score=250.47 Aligned_cols=200 Identities=12% Similarity=0.083 Sum_probs=162.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~ 120 (287)
...++++++++.+.||+..++ .++ +.+.++++++|+||||||||||+|++..+.. .. .|+|.++|.
T Consensus 3 ~~~~~~~~~~l~~yYg~~~aL-----~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ 74 (253)
T COG1117 3 MKIPAIEVRDLNLYYGDKHAL-----KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGK 74 (253)
T ss_pred cccceeEecceeEEECchhhh-----ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCe
Confidence 345789999999999999999 999 9999999999999999999999999999876 44 488888886
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH------HhccCCCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK------NLRNQGSVYAPSFD 184 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~------~l~~~~~~~~~~lS 184 (287)
+. ++.+|++||.+..++ +++++|+.++.+.+|.....-.+.+++.|. ++.+..+.....||
T Consensus 75 ni~~~~~d~~~lRr~vGMVFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LS 151 (253)
T COG1117 75 NIYDPKVDVVELRRRVGMVFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLS 151 (253)
T ss_pred eccCCCCCHHHHHHHheeeccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCC
Confidence 53 345999999976544 899999999999888765333444555544 34466677888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
||||||++||++++.+|++|++|+|+..||+ .+-+.+.++.+. +|+|||+|..+.+ +.. |++++.|.
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 9999999999999999999999999999999 233333444332 4699999999987 322 99999999
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 232 T~~iF~ 237 (253)
T COG1117 232 TDKIFT 237 (253)
T ss_pred HHhhhc
Confidence 988754
No 19
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-36 Score=252.06 Aligned_cols=200 Identities=18% Similarity=0.129 Sum_probs=165.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++++|++.+ .+. +++ |.+++|+++||+|||||||||++++|++++. |++|.|.++|.+.
T Consensus 1 Ml~v~~l~K~y~~~v---~Av-rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~v 73 (245)
T COG4555 1 MLEVTDLTKSYGSKV---QAV-RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFV 73 (245)
T ss_pred CeeeeehhhhccCHH---hhh-hheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHH
Confidence 578899999999943 233 555 9999999999999999999999999999999 9999999998653
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
++.+|+++-. ..++. .||++||+.+..+.+++...+...+..++.+.++ ...++++..||.||||||+||+|++++
T Consensus 74 rr~IGVl~~e-~glY~-RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 74 RRKIGVLFGE-RGLYA-RLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred hhhcceecCC-cChhh-hhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 3458888833 33333 4999999999999999887777777878777777 567889999999999999999999999
Q ss_pred ccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 201 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 201 a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
|+++++|+|+..||-. +.+.+.++.. .+||.||+|+++.. |++ |.++..|+++++....
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 9999999999999983 3333333333 35799999999987 665 8999999988876543
No 20
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5.9e-36 Score=257.06 Aligned_cols=183 Identities=15% Similarity=0.041 Sum_probs=146.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++.+.|+..... ..+.+++ +.|++||+++|+||||||||||+++|.|+.+ |++|.+.++|.+.
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~ 77 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL 77 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence 5677888888754332 2222777 9999999999999999999999999999999 9999999988432
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCC-CCCCCCCcccCCchhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGS-VYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~-~~~~~lSgG~~qrv~ia~ 195 (287)
.+.+||+||+...++ .+|+.||+.++....+.+.....+++.++++.++. ... +++.+|||||||||+||+
T Consensus 78 ~~~R~~~iGfvFQ~~nLl~--~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIAR 155 (226)
T COG1136 78 AKLRRKKIGFVFQNFNLLP--DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIAR 155 (226)
T ss_pred HHHHHHhEEEECccCCCCC--CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHH
Confidence 345999999955444 39999999998776665543445667788888773 344 668899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|++.+|++++.|||+--||. .+++.+.++.+ ..|+||||.+.+..
T Consensus 156 AL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~ 208 (226)
T COG1136 156 ALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY 208 (226)
T ss_pred HHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence 99999999999999999999 45555555543 34699999999876
No 21
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-36 Score=278.83 Aligned_cols=197 Identities=16% Similarity=0.094 Sum_probs=162.9
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.| +...++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVI-----KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA 74 (356)
T ss_pred EEEEEeEEEEeCCCCEEE-----eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 57889999999 777777 888 9999999999999999999999999999999 9999999988543
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++|++|+...++ ++|+++|+.++....+.+.....+++.++++.++ ...++++.+|||||+|||+||+|++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~ 152 (356)
T PRK11650 75 DRDIAMVFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVRE 152 (356)
T ss_pred HCCEEEEeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 4899999999876554443334566788888877 456788899999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++|++||++..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 153 PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 999999999999998 34445554433 24799999999877 444 89999999998754
No 22
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=7.1e-36 Score=271.58 Aligned_cols=201 Identities=17% Similarity=0.129 Sum_probs=167.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|++..++ +++ ++|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l-----~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVV-----DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRA 75 (306)
T ss_pred CCceEEEEeEEEEECCeEEE-----ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccch
Confidence 45789999999999988777 999 9999999999999999999999999999999 9999999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+..++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++ ...++++..||+||+||++||+|+
T Consensus 76 ~~~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL 153 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDP--DFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARAL 153 (306)
T ss_pred HHHHhcEEEEeccCcCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 245999999965443 4899999998766665543334456677888777 345778889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+.+|++|++|+|+..||. .+++.++++.+. .+++||+++++.. |++ |++++.|+++++...
T Consensus 154 ~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred hCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999 566666666432 3688999999876 554 899999999987654
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.3e-36 Score=276.97 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=164.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+...++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 74 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTAL-----KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ 74 (353)
T ss_pred cEEEEEEEEEEeCCeEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence 468899999999987777 888 9999999999999999999999999999999 9999999988543
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++|++|+...++ ++|+.+|+.++....+.+..+..+++.++++.++ ...++++.+|||||+||+++|+|++.+
T Consensus 75 ~r~ig~v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 75 KRDYGIVFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred HCCEEEEeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965444 4999999999876555444444567888888887 345788899999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+++++||++..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999998 34444444433 24799999999877 554 89999999988764
No 24
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=7e-36 Score=277.79 Aligned_cols=202 Identities=13% Similarity=0.143 Sum_probs=165.9
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
....++++++++++.|++..++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 9 ~~~~~~L~l~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 9 SSLSPLVELRGISKSFDGKEVI-----SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITH 80 (375)
T ss_pred ccCCceEEEEEEEEEECCeEEE-----eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCC
Confidence 3556789999999999987777 888 9999999999999999999999999999999 9999999988643
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ ++|+.+|+.++....+.+.....+++.++++.++ ...++++.+|||||+|||++|++
T Consensus 81 ~~~~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 81 VPAENRHVNTVFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred CCHHHCCEEEEecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence 345999999965444 4899999998766554443333456778888777 44678888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+++..||.. +++.|+++.+ ..|++|||++++.. |++ |++++.|++.+++.
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~ 234 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYE 234 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999993 4444444433 24799999999877 554 89999999988764
No 25
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.4e-35 Score=272.75 Aligned_cols=201 Identities=17% Similarity=0.150 Sum_probs=165.9
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|+++.++ +++ ++|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l-----~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVV-----NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARA 109 (340)
T ss_pred CceeEEEEEEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcch
Confidence 34689999999999988888 999 9999999999999999999999999999999 9999999888642
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+..++|++|+...++ .+|+.+|+.+....++.......+++.++++.++ ...+.++.+||+||+||++||+|+
T Consensus 110 ~~~~~~ig~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL 187 (340)
T PRK13536 110 RLARARIGVVPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARAL 187 (340)
T ss_pred HHHhccEEEEeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHH
Confidence 345999999965443 4899999987665555433333455667777777 346788899999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+.+|+++++|+|+..||+ .+++.+.++.. .++++||+++++.. |++ |++++.|+++++...
T Consensus 188 ~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 188 INDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999 56666666543 24689999999877 554 899999999988654
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-35 Score=272.99 Aligned_cols=197 Identities=16% Similarity=0.103 Sum_probs=161.3
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+. ..++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L-----~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~ 72 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQAL-----NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTL 72 (343)
T ss_pred CEEEEEEEEEECCCCcceEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcC
Confidence 4678899999953 2456 888 9999999999999999999999999999999 9999999988642
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
++.++|++|+...++ .+|+++|+.+.....+.+.....+++.++++.++ ...+.++.+||||||||++
T Consensus 73 ~~~~l~~~r~~Ig~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 73 SNSELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred CHHHHHHHhcCEEEEECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 235999999965433 3899999998766555444445567888898887 3457888899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||+|++.+|++|++||++..||. .+++.++++.+ ..|++||+++++.+ |++ |++++.|++.++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999 45555555543 24699999999876 554 89999999888753
No 27
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=278.89 Aligned_cols=207 Identities=18% Similarity=0.140 Sum_probs=169.5
Q ss_pred CCCccccCcccccccccch------hhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLK------VLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~------~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
..|+++++++++.|..+.. -..+..+++ |.+.+||++||+|+||||||||+|+|+|+++ |++|+|.++|.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~ 353 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ 353 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence 6789999999999995321 122334666 9999999999999999999999999999999 99999988775
Q ss_pred C----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 121 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 121 ~----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
+ ....+.++|||++...++.+|+.+++......+... .+...+++.++++.++. ..++++.+||||
T Consensus 354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG 433 (539)
T COG1123 354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG 433 (539)
T ss_pred ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence 4 124589999999999999999999999987765433 34445578899999883 467899999999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh---cC-ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF---DE-KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~---~~-~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
||||++||+||+.+|+++++||++.-||.. +.+.+.++. .. .+|||||++++.+ |++ |++++.|+
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~ 513 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGP 513 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCC
Confidence 999999999999999999999999999993 333333333 32 3799999999988 665 99999997
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
.+++..
T Consensus 514 ~~~v~~ 519 (539)
T COG1123 514 TEKVFE 519 (539)
T ss_pred HHHHhc
Confidence 777654
No 28
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.2e-35 Score=275.08 Aligned_cols=196 Identities=13% Similarity=0.166 Sum_probs=162.9
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC--cccccCCCCC------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~--G~i~~~~~~~------ 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++ |+|.++|...
T Consensus 6 l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~ 77 (362)
T TIGR03258 6 IRIDHLRVAYGANTVL-----DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH 77 (362)
T ss_pred EEEEEEEEEECCeEEE-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence 6788999999987777 888 9999999999999999999999999999999 999 9999887542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.++|++|+...++ ++|+++|+.++....+.+......++.++++.++ ...++++.+|||||||||++|+|++.+
T Consensus 78 ~r~ig~vfQ~~~l~p--~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFP--HLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 245999999965443 4899999999876655444444557788888877 346788999999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc-----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD-----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~-----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++|++|+++..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 34455544433 24699999999877 555 89999999998865
No 29
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-36 Score=254.84 Aligned_cols=199 Identities=20% Similarity=0.166 Sum_probs=163.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc---
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--- 124 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--- 124 (287)
++++++++++++||.-.++ +++ +++++||++|||||||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 2 ~~lL~v~~l~k~FGGl~Al-----~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAV-----NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred CceeeeccceeecCCEEEE-----eceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCH
Confidence 5788999999999999999 999 9999999999999999999999999999999 999999999876421
Q ss_pred ------eeEEEeCCCCCCCcccCCccccHHHHHHhc-------CCC-----CCchHHHHHHHHHHhc--cCCCCCCCCCC
Q 023126 125 ------VATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLR--NQGSVYAPSFD 184 (287)
Q Consensus 125 ------~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-------~~~-----~~~~~~~~~~~l~~l~--~~~~~~~~~lS 184 (287)
-++--||..-.++ .|||.||+..+...+ +.+ ..+..+++.++|+.++ ...+.+..+||
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~--~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Ls 151 (250)
T COG0411 74 HRIARLGIARTFQITRLFP--GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLS 151 (250)
T ss_pred HHHHhccceeecccccccC--CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCC
Confidence 2566788865444 499999998764321 111 2334567788888888 45677888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
+|||+|+.||+|++.+|++|++|||...+.. ++.+.++++.+ . .++|.|||+.++. |++ |+++++
T Consensus 152 yG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAe 231 (250)
T COG0411 152 YGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAE 231 (250)
T ss_pred hhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCccc
Confidence 9999999999999999999999999999987 44555555554 2 3499999999998 554 999999
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
|+|+++..
T Consensus 232 G~P~eV~~ 239 (250)
T COG0411 232 GTPEEVRN 239 (250)
T ss_pred CCHHHHhc
Confidence 99999764
No 30
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-35 Score=274.28 Aligned_cols=199 Identities=14% Similarity=0.136 Sum_probs=164.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|++..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 17 ~~~l~l~~v~~~~~~~~~l-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~ 88 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAV-----DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP 88 (377)
T ss_pred CceEEEEeEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 5579999999999887777 888 9999999999999999999999999999999 9999999988643
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
++.++|++|+...++ ++|+.+|+.++....+.+..+..+++.++++.++ ...++++.+|||||+||++||+|++.
T Consensus 89 ~~r~ig~vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 89 YQRPINMMFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred HHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 345999999965444 4899999998876554443344567778888877 34578888999999999999999999
Q ss_pred CccEEEEcCcccCCChhhH----HHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 200 QHKVVIVDGNYLFLDGGVW----KDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 200 ~a~~li~d~~~lllDe~~~----~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++|++|+++..||.... +.++++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 9999999999999999433 33334432 24799999999877 554 89999999998764
No 31
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.9e-36 Score=248.42 Aligned_cols=200 Identities=17% Similarity=0.188 Sum_probs=166.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
+.+.++++.+.|+.+.++ +++ +.|.+||+|||+|||||||||.+.|+.|+.+ |++|+|.+++.+..
T Consensus 3 ~~L~a~~l~K~y~kr~Vv-----~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~ 74 (243)
T COG1137 3 STLVAENLAKSYKKRKVV-----NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH 74 (243)
T ss_pred cEEEehhhhHhhCCeeee-----eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence 467889999999999999 999 9999999999999999999999999999999 99999999987643
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC--chHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.-++|+||++..+- .+||.+|+...+........ +...++.++|+.+. ...+.+...||||||+|+.||+
T Consensus 75 ~RArlGigYLpQE~SIFr--~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR 152 (243)
T COG1137 75 KRARLGIGYLPQEASIFR--KLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR 152 (243)
T ss_pred HHhhcCcccccccchHhh--cCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence 23899999976554 49999999988776653322 34445778888887 4556778899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc--e-EEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK--W-FIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~--i-~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
||+.+|+.+++|+|+...|+ ++.+.+..+.+.. | +.+|+..+... |.. |++++.|+|++++.+-
T Consensus 153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred HHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999 4445555555543 3 56799988776 433 8999999999987653
No 32
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=8.2e-35 Score=269.05 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=160.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~L~i~~l~~~~~~~~~l-----~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~ 73 (353)
T PRK10851 2 SIEIANIKKSFGRTQVL-----NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARD 73 (353)
T ss_pred EEEEEEEEEEeCCeEEE-----EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence 36788999999987777 888 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++|++|+...++ .+|+.+|+.+..... +.......+++.++++.++ ...++++.+|||||+||++||+|+
T Consensus 74 r~i~~v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 74 RKVGFVFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred CCEEEEecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 45999999965443 489999999876532 1222233457788888887 345778889999999999999999
Q ss_pred ccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|+++..||.. +++.+.++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999993 4444544433 24699999999887 554 89999999988754
No 33
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=257.49 Aligned_cols=206 Identities=17% Similarity=0.142 Sum_probs=164.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------ 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~------ 121 (287)
+++++|+++.|......+. +.+++ |.+++||++||+|+||||||||.+.|.|+++. ..-.+|+|.++|.+
T Consensus 1 lL~v~nL~v~f~~~~g~v~-av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVK-AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred CceEeeeEEEEecCCccEE-EEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 3678899999976432222 22777 99999999999999999999999999999961 01156888888863
Q ss_pred ------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc-----CCCCCCCCCCcccC
Q 023126 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN-----QGSVYAPSFDHGVG 188 (287)
Q Consensus 122 ------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~-----~~~~~~~~lSgG~~ 188 (287)
..+.|+++|||+....++.+++.+.+......+.. .+++..+++.++|+.++. ..+.++.+|||||+
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 24569999999998888889999988887765432 244567788999999983 33678999999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||.||+|++.+|++||.||++..||. ++++.++++.+ . .||||||+.++.+ |++ |++++.|+++
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~ 239 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVE 239 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHH
Confidence 999999999999999999999999998 33344444433 2 3699999999988 665 9999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 240 ~i~~ 243 (316)
T COG0444 240 EIFK 243 (316)
T ss_pred HHhc
Confidence 8765
No 34
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1e-34 Score=266.33 Aligned_cols=207 Identities=15% Similarity=0.072 Sum_probs=161.1
Q ss_pred CCCccccCcccccccccch--------hhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC
Q 023126 48 AQPVFGKTRSLVQNKTSLK--------VLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~--------~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~ 118 (287)
..++++++++++.|+.... --..+.+++ +.|++||++||+|+||||||||+++|+|+++ |++|+|.++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~ 81 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWL 81 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEEC
Confidence 4578899999999963110 001233888 9999999999999999999999999999999 999999998
Q ss_pred CCCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC--CCCCchHHHHHHHHHHhcc---CCCCCCCC
Q 023126 119 QVKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRN---QGSVYAPS 182 (287)
Q Consensus 119 ~~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~--~~~~~~~~~~~~~l~~l~~---~~~~~~~~ 182 (287)
|.+. +..++|++|++....++.+|+.+|+.+....+. .......+++.++++.++. ..+.++.+
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 8642 235999999975333445899999988655432 2323334567788888874 34778889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI 247 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v 247 (287)
|||||+||++||+|++.+|++||+||++..||. .+++.+.++.+ ..+++|||++++.. |++ |+++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv 241 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV 241 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999998 34455554433 24699999999976 554 8999
Q ss_pred cCCChHHHHH
Q 023126 248 STGKPPDVAK 257 (287)
Q Consensus 248 ~~G~~~ev~~ 257 (287)
+.|+++++..
T Consensus 242 e~g~~~~i~~ 251 (331)
T PRK15079 242 ELGTYDEVYH 251 (331)
T ss_pred EEcCHHHHHc
Confidence 9999888764
No 35
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=270.01 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=160.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
.++++++++.|+++.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 3 ~l~i~~l~~~~~~~~vl-----~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYGDVVIS-----KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred EEEEEEEEEEeCCeEEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence 47889999999987777 888 9999999999999999999999999999999 9999999887542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||+++|+|++.+|
T Consensus 75 ~~i~~v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 75 RGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred CCEEEEeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 45999999965443 48999999987655444333334567888888873 457788899999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++||++..||.. +++.++++.. ..|++|||++++.. |++ |++++.|+++++..
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~ 223 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999983 4444555432 24799999998876 444 88888999888754
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.4e-34 Score=262.85 Aligned_cols=199 Identities=17% Similarity=0.147 Sum_probs=160.3
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~i~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVV-----NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARL 74 (303)
T ss_pred cEEEEEeEEEEeCCeEEE-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHH
Confidence 468899999999987777 998 9999999999999999999999999999999 9999999887542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
+..++|++|++..++ .+|+.+|+.+....++.......+++.++++.++. ..+.++.+|||||+||+++|++++.
T Consensus 75 ~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 75 ARVAIGVVPQFDNLDP--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred HhhcEEEEeccccCCc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 345999999965433 48999999865544443322233456677777763 4477888999999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+|+++++|||+..||. .+++.+.++.. ..+++|||++++.. |++ |++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999 45555555533 24699999999876 544 888899998887654
No 37
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.9e-34 Score=236.18 Aligned_cols=194 Identities=16% Similarity=0.117 Sum_probs=155.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
+.++++...|+....- . +.|..||+++|+||||||||||+++|+|+.. |.+|+|.++|.+. .+
T Consensus 2 l~L~~V~~~y~~~~~~-------fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R 71 (231)
T COG3840 2 LALDDVRFSYGHLPMR-------FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER 71 (231)
T ss_pred ccccceEEeeCcceEE-------EEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence 4556677777643222 2 5799999999999999999999999999999 9999999998652 45
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++++||++..+. ++||.+|+.++..-.=.-.+.+.+++..++.++| ...++.+.+|||||||||++|+++..+..
T Consensus 72 PVSmlFQEnNLFa--HLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~P 149 (231)
T COG3840 72 PVSMLFQENNLFA--HLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQP 149 (231)
T ss_pred Chhhhhhccccch--hhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCC
Confidence 6999999976554 4999999987643211124567888999999998 45677888999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++||++.-||+. ++..+.++.++ .++|||.++.+.+ |++ ||+.+.|..++...
T Consensus 150 ilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 150 ILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred eEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 99999999999994 44444455443 3699999999987 555 89999998888653
No 38
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.2e-34 Score=266.36 Aligned_cols=189 Identities=17% Similarity=0.205 Sum_probs=155.0
Q ss_pred ccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------Cce
Q 023126 59 VQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------PDV 125 (287)
Q Consensus 59 ~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------~~~ 125 (287)
+.|+.+.++ +++ +++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+. ++.
T Consensus 1 ~~~~~~~~l-----~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~ 72 (363)
T TIGR01186 1 KKTGGKKGV-----NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKK 72 (363)
T ss_pred CccCCceeE-----EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCc
Confidence 356777777 888 9999999999999999999999999999999 9999999988542 346
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|++|+...++ ++|+.+|+.+.....+.+.....+++.++++.++. ..++++.+||||||||++||+|++.+|++
T Consensus 73 i~~v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 73 IGMVFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred EEEEECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999865444 48999999988766555444455678888888873 45778889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++|+++..||. .+++.+.++.. ..||+|||++++.. |++ |++++.|+++++..
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 999999999999 34444444432 34799999999876 554 89999999888754
No 39
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-34 Score=235.78 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=170.9
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
.++.++++++.++||...++ +++ ++-..|+++.|||.|||||||+++||+=+.. |+.|.|.++|...
T Consensus 3 ~~~~l~v~dlHK~~G~~eVL-----KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~ 74 (256)
T COG4598 3 AENALEVEDLHKRYGEHEVL-----KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKR 74 (256)
T ss_pred cccceehhHHHhhcccchhh-----cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeee
Confidence 45789999999999999999 999 9999999999999999999999999999988 9999999988532
Q ss_pred -----------------CceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCC
Q 023126 123 -----------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPS 182 (287)
Q Consensus 123 -----------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~ 182 (287)
+...++++|. |.++. +||+.||+.... ...+.++.+..++++..|..+| +..+.++..
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~-FNLWs-HmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~ 152 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQH-FNLWS-HMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAH 152 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhh-cchhH-HHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccc
Confidence 1126889988 55543 599999988753 4567788888899999999999 455678889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hcccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
|||||+||++||+||+.+|+++++|+++..||+ ++++.++++..+ .+++||.|.++.. .++ |.+-+
T Consensus 153 LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE 232 (256)
T COG4598 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEE 232 (256)
T ss_pred cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecc
Confidence 999999999999999999999999999999999 566666777654 4799999999987 554 78888
Q ss_pred CCChHHHHH
Q 023126 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~ev~~ 257 (287)
+|+|+++..
T Consensus 233 ~G~P~qvf~ 241 (256)
T COG4598 233 EGPPEQVFG 241 (256)
T ss_pred cCChHHHhc
Confidence 999999864
No 40
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-34 Score=263.01 Aligned_cols=206 Identities=16% Similarity=0.126 Sum_probs=161.4
Q ss_pred CCccccCcccccccccchh-----hhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKV-----LCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~-----v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+... -..+.+++ +.|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l 79 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL 79 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence 4678999999999632110 01123888 9999999999999999999999999999999 9999999888542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
+..++|++|+++...++.+++.+++.+..... +.......+++.++++.++. ..+.++.+|||||
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 23599999998655555689999887755443 23333345577888888874 3477888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
+||++||+|++.+|++||+||++..||. .+++.|.++.+ ..|+||||++++.+ |++ |++++.|++
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~ 239 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTK 239 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999998 34445554433 24699999999976 554 899999998
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 240 ~~~~~ 244 (327)
T PRK11308 240 EQIFN 244 (327)
T ss_pred HHHhc
Confidence 88765
No 41
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-34 Score=243.89 Aligned_cols=200 Identities=16% Similarity=0.131 Sum_probs=166.9
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++...||...++ .++ +.+++||+++|+|+||||||||+|+|+|+.+ |.+|+|.++|.+..
T Consensus 1 ~~mL~v~~l~~~YG~~~~L-----~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 1 APMLEVENLSAGYGKIQAL-----RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred CCceeEEeEeecccceeEE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCH
Confidence 3688999999999998888 888 9999999999999999999999999999999 99999999997643
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhh
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.-++|+||....++. +||.||+..+...... ....+.+.+.++|-++.+..+++..+|||||||.++||+|
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~--LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPR--LTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred HHHHhCCeEeCcccccchhh--CcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHH
Confidence 238999999765554 9999999987654432 1222256677777778888899999999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|+.+|++|++|||...|-+ ++.+.++++.+. +++|.++...+++ |.+ ||++..|+.+++...
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999998 455555666542 3589999999987 433 999999999987543
No 42
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-34 Score=244.15 Aligned_cols=199 Identities=17% Similarity=0.119 Sum_probs=173.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----Cce
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDV 125 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----~~~ 125 (287)
+++++++++.||+..++ +++ |.+++|+++|++|+|||||||++++|+|+++ |++|+|.++|.+. .++
T Consensus 2 ~L~ie~vtK~Fg~k~av-----~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~r 73 (300)
T COG4152 2 ALEIEGVTKSFGDKKAV-----DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNR 73 (300)
T ss_pred ceEEecchhccCceeee-----cceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhh
Confidence 57889999999999999 999 9999999999999999999999999999999 9999999998653 457
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
|||+|.....++. +|+.+.+.|.....|.+.++...++..+|++++ .....++.+||.|++|++.+..++++.|.+
T Consensus 74 IGyLPEERGLy~k--~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 74 IGYLPEERGLYPK--MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred cccChhhhccCcc--CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 9999998665554 999999999999999998888889999999988 456678999999999999999999999999
Q ss_pred EEEcCcccCCChhhHHH----HHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 204 VIVDGNYLFLDGGVWKD----VSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 204 li~d~~~lllDe~~~~~----l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
+|+|+|+..||+.-.+. +.++.+ .+||.||.|+.+.+ +++ |+.|-.|+..++...+
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999933333 333333 34799999999988 665 8889999998887644
No 43
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-34 Score=251.58 Aligned_cols=195 Identities=17% Similarity=0.186 Sum_probs=153.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 72 (235)
T cd03261 1 IELRGLTKSFGGRTVL-----KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAEL 72 (235)
T ss_pred CeEEEEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhH
Confidence 3577899999877777 888 9999999999999999999999999999999 9999999887432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
+..++|++|++..++ .+|+.+|+.+....+ +.......+++.++++.++. ..++++.+|||||+||++||++
T Consensus 73 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 73 YRLRRRMGMLFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred HHHhcceEEEccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 234899999965433 479999998764432 12222234456777888773 3467888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++.+|+++++|||+..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++++.
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999999999999998 44455555432 24699999998865 444 7888888877654
No 44
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-34 Score=248.34 Aligned_cols=193 Identities=19% Similarity=0.169 Sum_probs=152.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 i~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (220)
T cd03265 1 IEVENLVKKYGDFEAV-----RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVR 72 (220)
T ss_pred CEEEEEEEEECCEEee-----eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHh
Confidence 3578899999887777 888 9999999999999999999999999999999 9999998887532 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++...+ .+|+.+|+.+....++.......+++.++++.++. ..+.++.+|||||+||+++|++++.+|
T Consensus 73 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 73 RRIGIVFQDLSVDD--ELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred hcEEEecCCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 35899999975433 47999999876554443322334567788888773 346788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+++++|||+..||. .+++.+.++.. ..|++|||++++.. |++ |++++.|++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 151 EVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999 34444554432 24699999999876 443 77777776554
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=263.95 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=158.0
Q ss_pred ccccCccccccc----ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNK----TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~----~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+ .+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il-----~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~ 72 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHAL-----NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTAL 72 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcC
Confidence 467889999997 34566 888 9999999999999999999999999999999 9999999987542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
++.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++. ..++++.+|||||+||++
T Consensus 73 ~~~~~~~~~~~ig~v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 73 SEKELRKARRQIGMIFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred CHHHHHHHhcCEEEEeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 245999999966433 38999999887655554333334567788888873 456788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
||++++.+|++|++|||+..||. .+++.++++.. ..|++|||++++.. |++ |++++.|+++++.
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999998 45555555532 24699999999876 544 8888889888765
No 46
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-34 Score=261.24 Aligned_cols=202 Identities=16% Similarity=0.142 Sum_probs=159.9
Q ss_pred ccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc-cCCCCcccccCCCCCC-
Q 023126 51 VFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVKPP- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~-~~p~~G~i~~~~~~~~- 123 (287)
+++++++++.|+.. .++ +++ |+|++||++||+|+||||||||+++|+|+++. ..|++|+|.++|.+..
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAV-----DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred eEEEeCeEEEECCCCccEEEE-----eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 67899999999763 456 888 99999999999999999999999999999861 0127899999886421
Q ss_pred -----------ceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcc
Q 023126 124 -----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHG 186 (287)
Q Consensus 124 -----------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG 186 (287)
+.++|++|+++...++.+++.+++....... +....+..+++.++|+.++.. .+.++.+||||
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 2599999998654555688888877655433 223333456778889888843 36788899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||++||+|++.+|++|++||++..||. .+++.+.++.+ ..|++|||++++.+ |++ |++++.|+
T Consensus 158 q~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~ 237 (326)
T PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237 (326)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999998 45555555543 24699999999866 554 89999999
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 238 ~~~~~~ 243 (326)
T PRK11022 238 AHDIFR 243 (326)
T ss_pred HHHHhh
Confidence 988764
No 47
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.9e-34 Score=259.19 Aligned_cols=189 Identities=16% Similarity=0.170 Sum_probs=152.7
Q ss_pred cccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------CceeEEEeC
Q 023126 60 QNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLPM 131 (287)
Q Consensus 60 ~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~~~i~~v~q 131 (287)
.|+.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ...++|++|
T Consensus 2 ~y~~~~~l-----~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q 73 (302)
T TIGR01188 2 VYGDFKAV-----DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQ 73 (302)
T ss_pred eeCCeeEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecC
Confidence 45666666 888 9999999999999999999999999999999 9999999988543 235899999
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCc
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~ 209 (287)
++..++ .+|+.+|+.+....++.......+++.++++.++. ..++++.+|||||+||+++|+|++.+|++|++|||
T Consensus 74 ~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 74 YASVDE--DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 965433 48999999887665554333334567788888873 45778889999999999999999999999999999
Q ss_pred ccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 210 YLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 210 ~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+..||+ .+++.+.++.+ ..+++||+++++.. |++ |++++.|+++++...
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999 45555555543 24689999999876 444 889999998887654
No 48
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=7e-34 Score=269.39 Aligned_cols=207 Identities=19% Similarity=0.206 Sum_probs=170.1
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC----CcccccCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KASSFDSQVK-- 121 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~----~G~i~~~~~~-- 121 (287)
.++++++|+++.|......+.++ +++ |.+.+||++||+|+|||||||+++.|.|+++ +. +|+|.++|.+
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v-~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~ 78 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAV-RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLL 78 (539)
T ss_pred CceEEEeceEEEEecCCcceeee-ecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchh
Confidence 45899999999998763222222 666 9999999999999999999999999999998 55 7999888853
Q ss_pred ----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CC--CCCCCCCCcc
Q 023126 122 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QG--SVYAPSFDHG 186 (287)
Q Consensus 122 ----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~--~~~~~~lSgG 186 (287)
..+.++|+||+++..+++.+|+.+.+......++ ....+..+++.++|+.++. .. +.++++||||
T Consensus 79 ~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG 158 (539)
T COG1123 79 GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGG 158 (539)
T ss_pred cCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCch
Confidence 2356999999999999988999998888776654 3355567788999999983 22 4588899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
||||+.||+|++.+|++||.|||+..||.. +++.|+++.++ .+|||||++++.+ |++ |++++.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 999999999999999999999999999994 44444444432 3699999999988 665 99999999
Q ss_pred hHHHHHHH
Q 023126 252 PPDVAKWR 259 (287)
Q Consensus 252 ~~ev~~~~ 259 (287)
+++++.+.
T Consensus 239 ~~~i~~~p 246 (539)
T COG1123 239 TEEILSNP 246 (539)
T ss_pred HHHHHhcc
Confidence 99988654
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.9e-34 Score=258.10 Aligned_cols=198 Identities=15% Similarity=0.070 Sum_probs=162.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.++++++++.|++..++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~~l-----~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~ 73 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNAL-----DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEV 73 (301)
T ss_pred EEEEEEEEEEECCEEEE-----EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHH
Confidence 36789999999987777 898 9999999999999999999999999999999 9999999888543
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++. ..++++..||+||+||+++|+|++.+
T Consensus 74 ~~~ig~~~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 74 QRNIGYLPEHNPLYL--DMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred HhceEEecCCCCCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 235999999965433 48999999887666655433344567788888773 45778889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|+++++|+|+..||. .+++.++++.. ..+++||+++++.+ |++ |++++.|+++++...
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999 45555555532 24699999999877 544 889999999987654
No 50
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=264.18 Aligned_cols=197 Identities=18% Similarity=0.252 Sum_probs=156.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.+..+++.+.|+...++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 28 ~~~~~~~~~~~~~~~~L-----~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~ 99 (400)
T PRK10070 28 GLSKEQILEKTGLSLGV-----KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAE 99 (400)
T ss_pred cccHHHHHhhcCCeEEE-----EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHH
Confidence 45566677777766566 888 9999999999999999999999999999999 9999999988542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
+..++|++|+...++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||++||+
T Consensus 100 l~~~~~~~igyv~Q~~~l~~--~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LAr 177 (400)
T PRK10070 100 LREVRRKKIAMVFQSFALMP--HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLAR 177 (400)
T ss_pred HHHHHhCCEEEEECCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHH
Confidence 135999999965443 48999999987655544333344567788888873 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++.+|++|++||++..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 178 AL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~ 254 (400)
T PRK10070 178 ALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254 (400)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999999 44455555432 24699999999876 544 88888898887653
No 51
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9.7e-34 Score=245.75 Aligned_cols=193 Identities=17% Similarity=0.150 Sum_probs=151.7
Q ss_pred cccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAV-----DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeCCCCceee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHH
Confidence 356788899976 6667 888 9999999999999999999999999999999 9999999887543
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
.+.++|++|++..+. .+|+.+|+.+....++.+.....+++.++++.++. ..+.++.+||+||+||+++|++++.
T Consensus 73 ~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 73 ARQSLGYCPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred HhhhEEEecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 234899999865433 37999999876555443322234556777877763 4467788999999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+|+++++|||+..+|. .+++.+.++.+ ..|++||+++.+.. +++ |++++.|++++
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 9999999999999998 34444544443 34699999998865 443 77777777665
No 52
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=8.1e-34 Score=265.64 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=161.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+.+.++ +++ +.+++||++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 2 ~~L~~~nls~~y~~~~vL-----~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~ 73 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVL-----DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR 73 (402)
T ss_pred ceEEEeeEEEEECCEEEE-----EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence 478899999999988888 999 9999999999999999999999999999999 9999999988542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
.+.++|++|+...++. +|+.+|+.++...+ +.....+.+++.++++.++. ..++++.+||||||||++||
T Consensus 74 ~~~~~ig~v~q~~~l~~~--~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 74 AASRRVASVPQDTSLSFE--FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHhcceEEEccCCCCCCC--CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 2458999999754443 89999998754322 11123345677888888873 45778889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|++|++|||+..||. ++++.|+++.+ ..|++|||++++.+ |++ |++++.|++++++
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999 45555555543 23689999999977 554 8999999999864
No 53
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-34 Score=244.96 Aligned_cols=179 Identities=15% Similarity=0.132 Sum_probs=142.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03259 1 LELKGLSKTYGSVRAL-----DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERR 72 (213)
T ss_pred CeeeeeEEEeCCeeee-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhc
Confidence 3567899999877777 888 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+|||||+||+++|++++.+|+
T Consensus 73 ~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 73 NIGMVFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred cEEEEcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 37999999876544332222234456778887773 3467788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.+.++.+ .++++|||++++..
T Consensus 151 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 196 (213)
T cd03259 151 LLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALA 196 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9999999999998 44555555432 24699999998765
No 54
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=254.62 Aligned_cols=198 Identities=14% Similarity=0.113 Sum_probs=157.8
Q ss_pred ccccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.++++++++.|+. +.++ +++ +++.+||++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKAL-----DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCCcccccee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCC
Confidence 3678899999974 2456 888 9999999999999999999999999999999 9999999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qr 190 (287)
...++|++|++..... ..|+.+|+.+.....+.......+++.++++.++.. .+.++..|||||+||
T Consensus 74 ~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 74 KKVKLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred cCccHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHH
Confidence 2358999998632222 269999998866555544333445677888887743 567888999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
++||+|++.+|++|++|+++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999 45555555542 24699999999865 554 888999998887
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 233 ~~ 234 (287)
T PRK13637 233 FK 234 (287)
T ss_pred Hh
Confidence 54
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-33 Score=246.38 Aligned_cols=195 Identities=16% Similarity=0.138 Sum_probs=154.1
Q ss_pred ccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+.+ .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il-----~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTAL-----KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLL 72 (233)
T ss_pred CeEEecceEEccCCCCceeee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccC
Confidence 36788999999876 666 888 9999999999999999999999999999999 9999999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..+.++.+||+||+||++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 73 SGKELRKARRRIGMIFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred CHHHHHHHHhheEEEccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHH
Confidence 235899999976443 38999999876544433222234456778888773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+|++++.+|+++++|||+..+|. .+++.+.++.. ..|++||+++.+.. +++ |++++.|+++++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999998 44455555432 24699999998765 443 788888876665
No 56
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-33 Score=248.20 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=153.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
.++++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFGDFVAL-----DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQE 73 (239)
T ss_pred EEEEEeEEEEECCEEee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCccc
Confidence 36788999999887777 898 9999999999999999999999999999999 9999999887532 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCC----CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
..++|++|++..++ .+|+.+|+.+.....+. ......+++.++++.++. ..+.++.+||+||+||+++|+++
T Consensus 74 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 74 RNVGFVFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cceEEEecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 35899999975443 37999999876443322 111123456677777763 34677889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+.+|+++++|||+..||. .+++.+.++.+ ..|++|||++.+.. +++ |++++.|+++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999 34455555432 24699999998765 444 7888888877764
No 57
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2e-33 Score=257.77 Aligned_cols=203 Identities=17% Similarity=0.146 Sum_probs=161.0
Q ss_pred CCCCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccC
Q 023126 47 NAQPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDS 118 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~ 118 (287)
...++++++++++.|+. ..++ +++ ++|.+||++||+|+||||||||+++|+|+++ |+ +|+|.++
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~ 79 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAV-----NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFN 79 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEE-----eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEEC
Confidence 34578999999999953 3455 888 9999999999999999999999999999998 86 9999998
Q ss_pred CCCC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhccC-----CCCCC
Q 023126 119 QVKP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ-----GSVYA 180 (287)
Q Consensus 119 ~~~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~~-----~~~~~ 180 (287)
|.+. .+.++|++|+++...++.+++.+++.+....+. .......+++.++|+.++.. .+.++
T Consensus 80 G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p 159 (330)
T PRK09473 80 GREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYP 159 (330)
T ss_pred CEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCc
Confidence 8643 135999999986555566899998877654432 22223345677888887742 24678
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+|||||+||++||+|++.+|++||+||++..||. .+++.+.++.+ ..||+|||++.+.. |++ |+
T Consensus 160 ~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 160 HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239 (330)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999998 34444444433 24699999999876 554 89
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
+++.|+++++..
T Consensus 240 ive~g~~~~i~~ 251 (330)
T PRK09473 240 TMEYGNARDVFY 251 (330)
T ss_pred EEEECCHHHHHh
Confidence 999999988764
No 58
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.9e-33 Score=246.44 Aligned_cols=195 Identities=18% Similarity=0.129 Sum_probs=152.3
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 72 (236)
T cd03219 1 LEVRGLTKRFGGLVAL-----DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEI 72 (236)
T ss_pred CeeeeeEEEECCEEEe-----cCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHH
Confidence 3567889999876666 888 9999999999999999999999999999999 9999998887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC----------CCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~----------~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
...++|++|++..++ .+|+.+|+.+.....+.. .....+++.++++.++. ..+.++.+|||||+|
T Consensus 73 ~~~~i~~v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 73 ARLGIGRTFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred HhcCEEEEeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 134899999965433 379999998765433211 11223456777887773 346778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|+++|++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++.. +++ |++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 99999999999999999999999998 44555555442 24699999999866 444 777788877765
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 231 ~ 231 (236)
T cd03219 231 R 231 (236)
T ss_pred c
Confidence 3
No 59
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.6e-33 Score=245.55 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=150.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l-----~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|++ + |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYYGDKHAL-----KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEcCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhc
Confidence 3578899999877777 888 999999999999999999999999999999 8 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhccC--CCCC--CCCCCcccCCc
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ--GSVY--APSFDHGVGDP 190 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~~--~~~~--~~~lSgG~~qr 190 (287)
...++|++|++..+ . +|+.+|+.+....++.... ...+++.++++.++.. .+.. +.+|||||+||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr 149 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-P--GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR 149 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-c--ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence 23589999996543 3 7999999876544432221 1245667788877743 2344 58999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+++|++++.+|+++++|||+..||. .+++.++++.+ ..|++|||++.+.. +++ |++++.|++++
T Consensus 150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999 44455555443 35799999998765 444 77777777654
No 60
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=256.93 Aligned_cols=203 Identities=12% Similarity=0.120 Sum_probs=157.5
Q ss_pred CccccCccccccc----ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNK----TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~-~p~~G~i~~~~~~~- 122 (287)
++++++++++.|. ...++ +++ +.|.+||++||+|+||||||||+++|+|+++.. .|++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l-----~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~ 76 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAV-----DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLL 76 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEE-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECC
Confidence 4788999999994 34556 888 999999999999999999999999999998510 14889999988542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc---CC--CC-CchHHHHHHHHHHhccC-----CCCCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQ-----GSVYA 180 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~~--~~-~~~~~~~~~~l~~l~~~-----~~~~~ 180 (287)
++.++|++|++....++.+|+.+++.+....+ +. .. .+..+++.++|+.++.. .+.++
T Consensus 77 ~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p 156 (330)
T PRK15093 77 RLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP 156 (330)
T ss_pred cCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc
Confidence 13599999997655555689989887643221 10 11 12345678888888853 25778
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+|||||+||++||+|++.+|++||+||++..||. .+++.+.++.+ ..|+||||++++.. |++ |+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999998 44455555443 24699999999976 554 89
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
+++.|+++++..
T Consensus 237 ive~g~~~~i~~ 248 (330)
T PRK15093 237 TVETAPSKELVT 248 (330)
T ss_pred EEEECCHHHHHh
Confidence 999999888754
No 61
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-33 Score=252.42 Aligned_cols=195 Identities=18% Similarity=0.226 Sum_probs=155.0
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------- 122 (287)
...++++.|+...++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 26 ~~~~~~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~ 97 (269)
T cd03294 26 SKEEILKKTGQTVGV-----NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELR 97 (269)
T ss_pred hhhhhhhhcCCceEe-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhh
Confidence 566899999988888 998 9999999999999999999999999999999 9999999887432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+||+||+||++||+++
T Consensus 98 ~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 98 ELRRKKISMVFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhhcCcEEEEecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 235899999965443 37999999876544333222234566778888773 35678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|++|++|||+..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999 34444554432 24699999998765 444 78888888877653
No 62
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-33 Score=245.53 Aligned_cols=182 Identities=12% Similarity=0.044 Sum_probs=144.9
Q ss_pred CCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.|+++++++++.|+. ..++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~ 74 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVL-----HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMS 74 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeE-----EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcC
Confidence 367899999999974 3456 888 9999999999999999999999999999999 9999999988542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+|||||+|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQ 152 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHH
Confidence 135899999965433 37999999876443333222334567788888873 345677899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++|++++.+|+++++|||+..||. .+++.+.++.. ..|++|||++++..
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~ 211 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR 211 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 99999999999999999999999999 44555555532 24699999999765
No 63
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-33 Score=255.45 Aligned_cols=197 Identities=11% Similarity=0.068 Sum_probs=157.8
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.++++++++.|+.. .++ +++ +.|++||+++|+|+||||||||+++|+|+++ |++|+|.+++...
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l-----~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKAL-----DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCCCccccce-----eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceeccc
Confidence 36788999999753 355 888 9999999999999999999999999999999 9999998865321
Q ss_pred ------------------------------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH
Q 023126 123 ------------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN 171 (287)
Q Consensus 123 ------------------------------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 171 (287)
.+.++|++|++. .++. .|+.+|+.++....+.+.....+++.++++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 234899999853 3333 6999999987666555444445677888888
Q ss_pred hcc---CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH-
Q 023126 172 LRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ- 240 (287)
Q Consensus 172 l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~- 240 (287)
++. ..++++.+|||||+||++||++++.+|++|++|+++..||. .+++.+.++.+ .+|++|||++.+..
T Consensus 152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 874 25678889999999999999999999999999999999999 44455555433 24699999998876
Q ss_pred --HHh----hccccCCChHHHHH
Q 023126 241 --RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 241 --rv~----gr~v~~G~~~ev~~ 257 (287)
|++ |++++.|+++++..
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~ 254 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILS 254 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhc
Confidence 555 89999999888653
No 64
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-33 Score=230.91 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=161.6
Q ss_pred CccccCcccccccccc--hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---C
Q 023126 50 PVFGKTRSLVQNKTSL--KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---P 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~--~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~ 123 (287)
+.+.+++++..|..+. ++ +++ +.|.+||.+.++||||||||||+++++|+.. |+.|+|.+++... .
T Consensus 2 ~~l~~~~~sl~y~g~~~~~l-----e~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPg 73 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSAL-----EDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPG 73 (259)
T ss_pred ceeehhheEEecCCcchhhh-----hccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCC
Confidence 3456677888888766 55 787 9999999999999999999999999999999 9999999988642 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..-++++|++-.++ ++++.+|++|+++..|.+++...+.+.+.+..++ ...++++-+|||||+||+.+|+|++.+|
T Consensus 74 aergvVFQ~~~LlP--Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 74 AERGVVFQNEALLP--WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred ccceeEeccCccch--hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCc
Confidence 34688999987665 5999999999999999998888888899998888 4567788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhcC----ceEEEeCHHHHHH---HHh------hccccCCChH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFDE----KWFIEVDLDTAMQ---RVL------KRHISTGKPP 253 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~~----~i~vtHd~~~~~~---rv~------gr~v~~G~~~ 253 (287)
+.|++|+++-.+|. .+++.+.+++.. .++||||.+++.- |++ ||+++.=+++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999997 555566666653 3699999999876 554 6777654333
No 65
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.4e-33 Score=244.21 Aligned_cols=195 Identities=19% Similarity=0.195 Sum_probs=152.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03218 1 LRAENLSKRYGKRKVV-----NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKR 72 (232)
T ss_pred CeEEEEEEEeCCEEee-----ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHH
Confidence 3577899999877777 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
...++|++|++..++ .+|+.+|+.+....++.......+++.++++.++. ..+..+..||+||+||+++|++++.
T Consensus 73 ~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 73 ARLGIGYLPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred HhccEEEecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 134899999975433 37999999876443332222233456677777763 3467788999999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+|+++++|+|+..||. .+++.++++.. ..|++|||++.+.. +++ |++++.|+.+++.
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999998 34444444432 24689999998776 444 7787788777653
No 66
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3.6e-33 Score=249.60 Aligned_cols=200 Identities=13% Similarity=0.162 Sum_probs=156.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 4 ~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~ 75 (269)
T PRK11831 4 VANLVDMRGVSFTRGNRCIF-----DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMS 75 (269)
T ss_pred ccceEEEeCeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccC
Confidence 34678999999999887777 888 9999999999999999999999999999999 9999999887432
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|+...++ .+|+.+|+.+...... ........++.+.++.++. ..+.++.+|||||+||++
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~ 153 (269)
T PRK11831 76 RSRLYTVRKRMSMLFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAA 153 (269)
T ss_pred hhhHHHHhhcEEEEecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 235899999965433 3799999987543321 1222223456677887773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||++++.+|+++++|+|+..||. .+++.+.++.. .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 154 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 154 LARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999 34445555432 24699999998866 443 78888888877643
No 67
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.6e-33 Score=244.86 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=155.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+.+.++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.++|....
T Consensus 1 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~ 72 (236)
T TIGR03864 1 ALEVAGLSFAYGARRAL-----DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAA 72 (236)
T ss_pred CEEEEeeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhh
Confidence 35678999999877777 888 9999999999999999999999999999999 99999998875421
Q ss_pred -ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 124 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 124 -~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
..++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+|||||+||+++|++++.+
T Consensus 73 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 73 LARLGVVFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hhhEEEeCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 35899999865433 37999999876544332222234456777877763 34677889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
|+++++|+|+..||. .+++.+.++.+ ..+++||+++.+.. +++ |++++.|+++++...
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999998 44455555542 24699999999865 443 777888887776543
No 68
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.3e-33 Score=243.38 Aligned_cols=196 Identities=17% Similarity=0.139 Sum_probs=153.1
Q ss_pred cccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 52 FGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++.|+. +.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 72 (241)
T cd03256 1 IEVENLSKTYPNGKKAL-----KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKA 72 (241)
T ss_pred CEEeeEEEecCCccEEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhH
Confidence 356788999986 6667 888 9999999999999999999999999999999 9999999887542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHh--------cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccC
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 188 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~--------~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~ 188 (287)
...++|++|+...++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||+
T Consensus 73 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 73 LRQLRRQIGMIFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred HHHHHhccEEEcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence 134899999965443 37999998764321 111112234566777887773 44678889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
||+++|++++.+|+++++|||+..||. .+++.++++.+ ..|++|||++.+.. +++ |++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 999999999999999999999999998 45555555532 24699999999875 444 7888888887
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 231 ~~~~ 234 (241)
T cd03256 231 ELTD 234 (241)
T ss_pred HhhH
Confidence 7643
No 69
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.98 E-value=4.2e-33 Score=240.59 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=142.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 i~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~ 72 (213)
T cd03301 1 VELENVTKRFGNVTAL-----DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDR 72 (213)
T ss_pred CEEEeeEEEECCeeee-----eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence 3567889999877666 888 9999999999999999999999999999999 9999999887532 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ ..|+.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 73 DIAMVFQNYALYP--HMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred eEEEEecChhhcc--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999975433 37999999876544332222234456777887763 3567888999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.++++.+ ..|++|||++++..
T Consensus 151 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~ 196 (213)
T cd03301 151 VFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMT 196 (213)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 9999999999999 35555555532 24699999998765
No 70
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.98 E-value=4.1e-33 Score=241.24 Aligned_cols=180 Identities=12% Similarity=0.025 Sum_probs=142.9
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
+++++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPAL-----DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEecCCCeeEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcCh
Confidence 3678899999964 3466 888 9999999999999999999999999999999 9999999987542
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||+++|
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred hHHHHHHHhceEEecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 135899999965443 37999999886554433222234567788888773 45677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~ 203 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVET 203 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999 34444554432 24699999998764
No 71
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=3.2e-33 Score=250.58 Aligned_cols=197 Identities=16% Similarity=0.140 Sum_probs=156.0
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
++++++++++.|+ ...++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKAL-----KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENE 74 (274)
T ss_pred ceEEEEEEEEEeCCCCeee-----eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCH
Confidence 4788999999995 44566 888 9999999999999999999999999999999 9999999988543
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..... ..|+.+|+.+.....+.......+++.++++.++ ...++++.+|||||+||+++|+|+
T Consensus 75 ~~~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVF-SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HHHHhhEEEEecChhhhhc-cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 2358999998632222 2699999987654443332233456677788777 345678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+.+|+++++|+++..||. .+++.+.++.+ ..+++|||++.+.+ |++ |++++.|+++++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999 44555555543 34699999999866 544 888888987654
No 72
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=3.4e-33 Score=252.32 Aligned_cols=196 Identities=11% Similarity=0.062 Sum_probs=157.5
Q ss_pred cccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+. ..++ +++ ++|++||+++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 74 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRAL-----YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAG 74 (290)
T ss_pred EEEEEEEEEECCCCcccccce-----eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccc
Confidence 678899999974 3456 888 9999999999999999999999999999999 9999999988543
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~q 189 (287)
...++|++|++. .++. .|+.+|+.+.....+.+.....+++.++++.++.. .+.++.+|||||+|
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 75 KKNKKLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMR 152 (290)
T ss_pred cccchHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHH
Confidence 135899999863 2333 69999998876555444333345677888888843 46788899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
|++||++++.+|++|++|+++..||. .+++.+.++.. .+|++|||++++.. |++ |++++.|++.+
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 44455555532 24699999999876 555 88899998888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 233 ~~~ 235 (290)
T PRK13634 233 IFA 235 (290)
T ss_pred Hhc
Confidence 653
No 73
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.98 E-value=4.7e-33 Score=240.35 Aligned_cols=180 Identities=12% Similarity=0.052 Sum_probs=140.8
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---CceeEE
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATV 128 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i~~ 128 (287)
+++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|... ...++|
T Consensus 1 ~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGGHPVL-----EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY 72 (213)
T ss_pred CcccceeEECCEEee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE
Confidence 357888999877667 888 9999999999999999999999999999999 9999999988643 345999
Q ss_pred EeCCCCCCCcccCCccccHHHHHHhcC----CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~~~----~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++.......+|+.+|+.+...... .......+++.++++.++. ..++++.+|||||+||+++|++++.+|+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 152 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD 152 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 999965422223699999887533211 1112234466777887763 4567888999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~ 197 (213)
T cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLE 197 (213)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999 34455555442 24699999998764
No 74
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.98 E-value=6.3e-33 Score=240.90 Aligned_cols=192 Identities=16% Similarity=0.124 Sum_probs=149.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+...++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 72 (222)
T cd03224 1 LEVENLNAGYGKSQIL-----FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHER 72 (222)
T ss_pred CEEeeEEeecCCeeEe-----eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHH
Confidence 3578889999876666 888 9999999999999999999999999999999 9999999887432
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHh---ccCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+....++ .....+++.++++.+ ....+.++.+||+||+||+++|++++
T Consensus 73 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 73 ARAGIGYVPEGRRIFP--ELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred HhcCeEEeccccccCC--CCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 234899999975433 4799999987654332 122233445555555 24456788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
.+|+++++|+|+..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999 45555555542 24699999998766 443 677777776654
No 75
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.98 E-value=8e-33 Score=245.83 Aligned_cols=203 Identities=16% Similarity=0.119 Sum_probs=158.2
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC---
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--- 121 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~--- 121 (287)
|.++++++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 1 MMDQPLLSVRGLTKLYGPRKGC-----RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQL 72 (258)
T ss_pred CCCCceEEEeeeEEEcCCceee-----eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCccccc
Confidence 3456789999999999887777 888 9999999999999999999999999999999 999999988864
Q ss_pred --C------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhccC---CCCCCCCC
Q 023126 122 --P------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSF 183 (287)
Q Consensus 122 --~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~l 183 (287)
. ...++|++|++.......+++.+|+.+....++.. ......++.++++.++.. .+..+.+|
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 152 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTF 152 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccC
Confidence 2 12489999997433333468888887643322211 112244567778877742 36778899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hcccc
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||||+||+++|++++.+|+++++|+|+..||.. +++.++++.. ..|++||+++.+.. +++ |++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999993 4444544432 23699999999875 444 88888
Q ss_pred CCChHHHH
Q 023126 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~ev~ 256 (287)
.|+++++.
T Consensus 233 ~~~~~~~~ 240 (258)
T PRK11701 233 SGLTDQVL 240 (258)
T ss_pred eCCHHHHh
Confidence 89888764
No 76
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=4.3e-33 Score=240.09 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=143.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----Ccee
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 126 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----~~~i 126 (287)
++++++++.|+.+.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|... ...+
T Consensus 1 l~~~~l~~~~~~~~~l-----~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i 72 (210)
T cd03269 1 LEVENVTKRFGRVTAL-----DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRI 72 (210)
T ss_pred CEEEEEEEEECCEEEE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccE
Confidence 3567888999877677 888 9999999999999999999999999999999 9999999988653 3458
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..+.++.+||+||+||+++|++++.+|+++
T Consensus 73 ~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 73 GYLPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred EEeccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999975433 37999999876544443333334566778887773 345678899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|||+..+|. .+++.++++.. ..+++|||++.+..
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~ 193 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEE 193 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999998 34455554432 24699999998765
No 77
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.98 E-value=5.7e-33 Score=258.19 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=157.3
Q ss_pred CcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC----CC-------
Q 023126 55 TRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KP------- 122 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~----~~------- 122 (287)
..+.+.||...++ +++ +.+++||+++|+|+||||||||+++|+|+++ |++|+|.++|. +.
T Consensus 28 ~~~~~~~g~~~~l-----~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~ 99 (382)
T TIGR03415 28 EEILDETGLVVGV-----ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAAT 99 (382)
T ss_pred HHHHHhhCCEEEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHH
Confidence 3566788888888 888 9999999999999999999999999999999 99999999873 11
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.+.++|++|+...++ .+|+.+|+.++....+.+.....+++.++++.++. ..+.++.+|||||+||++||+
T Consensus 100 l~~~r~~~i~~vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 100 LRRLRTHRVSMVFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred HHHHhcCCEEEEECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 135999999965443 48999999987655554444445677888888884 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.+.++.. ..||+|||++++.+ |++ |++++.|+++++..
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999 44455555433 24799999999876 554 89999999988753
No 78
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.98 E-value=1.9e-32 Score=222.48 Aligned_cols=188 Identities=16% Similarity=0.092 Sum_probs=151.1
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+...+++++++.+.-+....-++-+ .++ +.|++||.++|+||||||||||+-+++|+.. |++|+|++.|...
T Consensus 2 ~~~~ii~~~~l~ktvg~~~~~l~IL-~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~l 77 (228)
T COG4181 2 PAENIIEVHHLSKTVGQGEGELSIL-KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKL 77 (228)
T ss_pred CccceeehhhhhhhhcCCCcceeEe-ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhc
Confidence 3344778888777776544333333 555 9999999999999999999999999999999 9999998877642
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
...++++||.-...+ .||..||+..+....+-..+.....+.+.|+.++ .....++.+|||||||||
T Consensus 78 dEd~rA~~R~~~vGfVFQSF~Lip--~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 78 DEDARAALRARHVGFVFQSFHLIP--NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV 155 (228)
T ss_pred CHHHHHHhhccceeEEEEeeeccc--cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH
Confidence 355999999844334 3999999999988877555555667888999988 456778999999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----c----CceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----D----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~----~~i~vtHd~~~~~~ 240 (287)
+||+|++..|++|+.|+|+--||...-+.+.++. . ..|+||||...+.+
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R 212 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR 212 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh
Confidence 9999999999999999999999985544544443 2 24799999999887
No 79
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.98 E-value=8e-33 Score=239.67 Aligned_cols=178 Identities=16% Similarity=0.080 Sum_probs=141.6
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+. +.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~~~~il-----~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~ 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQAL-----KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLS 72 (218)
T ss_pred CeEeeeEEEecCCCcceeEE-----eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcc
Confidence 356788999976 5666 888 9999999999999999999999999999999 9999999887532
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03255 73 EKELAAFRRRHIGFVFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA 150 (218)
T ss_pred hhHHHHHHhhcEEEEeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHH
Confidence 235899999965443 37999999886544433222234466778888773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+|++++.+|+++++|||+..||. .+++.+.++.+ ..|++||+++++.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 99999999999999999999999 44555555533 2468999999864
No 80
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=5e-33 Score=250.97 Aligned_cols=197 Identities=16% Similarity=0.115 Sum_probs=156.7
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|+.. .++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l-----~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRAL-----FDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCCcccccce-----eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECcc
Confidence 46788999999742 245 788 9999999999999999999999999999999 9999999988542
Q ss_pred ----------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccC
Q 023126 123 ----------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVG 188 (287)
Q Consensus 123 ----------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~ 188 (287)
...++|++|++. .++. .|+.+|+.+....++.+......++.++++.++. ..+..+..|||||+
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqk 150 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQM 150 (288)
T ss_pred ccccccHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHH
Confidence 234899999863 2333 5999999987666554433344567788888774 24678889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
||++||++++.+|++|++|+++..||. .+++.+.++.+ .++++|||++.+.. |++ |++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999 34444444432 24699999998865 555 89999999988
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 754
No 81
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=5.8e-33 Score=249.49 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=158.1
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++++.|+. +.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~ 74 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTL-----NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEE 74 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeee-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcC
Confidence 46889999999974 3356 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++...+. ..|+.+|+.+.....+.......+++.++++.++. ..++.+.+|||||+||++||+
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAr 153 (279)
T PRK13650 75 NVWDIRHKIGMVFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAG 153 (279)
T ss_pred cHHHHHhhceEEEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHH
Confidence 1358999998632222 26999999887555444333344567788888773 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.+.++.+ .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 154 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13650 154 AVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFS 229 (279)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999 44555555543 24699999998844 444 78888898887654
No 82
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=6.9e-33 Score=249.95 Aligned_cols=197 Identities=15% Similarity=0.081 Sum_probs=156.4
Q ss_pred ccccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|+. +.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGL-----DNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCCCccccce-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECcc
Confidence 4678899999974 3466 888 9999999999999999999999999999999 9999999988542
Q ss_pred ----------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccC
Q 023126 123 ----------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG 188 (287)
Q Consensus 123 ----------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~ 188 (287)
+..++|++|++. .++. +|+.+|+.+....++.......+++.++++.++.. .++++.+|||||+
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEAQLFE--NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQM 151 (287)
T ss_pred ccccchHHHHHhceEEEEeChhhhhcc--chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHH
Confidence 134899999963 2332 79999998765444333233345677888888753 4678889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
||++||++++.+|++|++|||+..||. .+++.+.++.+ .++++|||++.+.. |++ |++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999 44455555432 24699999999876 554 78888898887
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 653
No 83
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.98 E-value=9.6e-33 Score=244.06 Aligned_cols=196 Identities=14% Similarity=0.157 Sum_probs=153.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVL-----HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS 74 (250)
T ss_pred cEEEeceEEEECCeeee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence 68899999999877777 888 9999999999999999999999999999999 9999998876431
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..++ .+|+.+|+.+.... .+.......+++.++++.++. ..+.++.+|||||+||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 75 QQKGLIRQLRQHVGFVFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred chhhHHHHhhhhEEEEecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 235899999965443 37999999875332 222222233456777887773 3467788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++|++++.+|+++++||++..||.. +++.+.++.+ ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999983 4444444432 24699999998865 444 7888888877764
No 84
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.98 E-value=9.5e-33 Score=240.88 Aligned_cols=184 Identities=16% Similarity=0.043 Sum_probs=145.3
Q ss_pred cCCCCccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 46 ANAQPVFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
|+.+++++++++++.|+.. .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~~~l-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~ 72 (228)
T PRK10584 1 MPAENIVEVHHLKKSVGQGEHELSIL-----TGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQ 72 (228)
T ss_pred CCcCceEEEeeeEEEccCCCcceEEE-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCE
Confidence 3466789999999999752 356 888 9999999999999999999999999999999 99999998875
Q ss_pred CC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcc
Q 023126 121 KP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 186 (287)
Q Consensus 121 ~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG 186 (287)
.. ...++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++. ..+..+..||+|
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G 150 (228)
T PRK10584 73 PLHQMDEEARAKLRAKHVGFVFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGG 150 (228)
T ss_pred EcccCCHHHHHHHHhheEEEEEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHH
Confidence 32 135899999965433 37999999875433332222334567788888773 346678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
|+||+++|++++.+|+++++|+|+..||. .+++.++++.. .+|++|||++.+.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 99999999999999999999999999998 44455554432 2468999999864
No 85
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.98 E-value=8e-33 Score=243.51 Aligned_cols=196 Identities=16% Similarity=0.148 Sum_probs=152.3
Q ss_pred ccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+ .+.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~l~~~~~~~~~il-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQAL-----KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGK 72 (243)
T ss_pred CeEEEeeeeecCCCccee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHH
Confidence 356789999997 66666 888 9999999999999999999999999999999 9999999887542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhc--------CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCccc
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~ 187 (287)
...++|++|++..++ .+|+.+|+.+..... +.......+++.++++.++. ..+.++.+|||||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150 (243)
T ss_pred HHHHHHhheEEEcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 234899999965443 379999987542211 11112234567778887773 4467888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
+||++||++++.+|+++++|||+..||. .+.+.+.++.. ..|++|||++.+.. +++ |++++.|++
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAP 230 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCH
Confidence 9999999999999999999999999998 34455555432 24689999999865 444 788888887
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 231 ~~~~ 234 (243)
T TIGR02315 231 SELD 234 (243)
T ss_pred HHhC
Confidence 7753
No 86
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=8.5e-33 Score=248.91 Aligned_cols=199 Identities=17% Similarity=0.113 Sum_probs=159.7
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
++++++++++.|+ .+.++ +++ +++++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 4 YILKVEELNYNYSDGTHAL-----KGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred ceEEEEeEEEEeCCCCeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcc
Confidence 4789999999996 45666 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++..... ..|+.+|+.+....++.+.....+++.++++.++. ..+.++..||+||+||++||+
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar 154 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG 154 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 1348999999632222 26999999876555444433334567788888873 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.+.++.. .++++|||++++.. |++ |++++.|+++++..
T Consensus 155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999 34455555543 24689999999875 554 88999999888754
No 87
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.98 E-value=8.1e-33 Score=241.61 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=150.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (230)
T TIGR03410 1 LEVSNLNVYYGQSHIL-----RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHER 72 (230)
T ss_pred CEEEeEEEEeCCeEEe-----cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHH
Confidence 3568899999877777 888 9999999999999999999999999999999 9999999887432
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHh---ccCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+....++.. ..+...+.++.+ ....+.++.+|||||+||+++|++++
T Consensus 73 ~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 73 ARAGIAYVPQGREIFP--RLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred HHhCeEEeccCCcccC--CCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 235899999975433 479999998765433221 122234444444 34567788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
.+|+++++|+|+..||. .+++.+.++.. ..|++||+++++.. +++ |++++.|+.+++..+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~~~ 222 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcChH
Confidence 99999999999999999 44455555432 24699999999875 444 788888888776443
No 88
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.98 E-value=6e-33 Score=240.45 Aligned_cols=179 Identities=15% Similarity=0.044 Sum_probs=143.7
Q ss_pred cccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+.+ .++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~v~~~~~~~~~~~~il-----~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~ 73 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAV-----DGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEP 73 (218)
T ss_pred eEEEEEEEecCCCCccceee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCH
Confidence 5678899999865 566 888 9999999999999999999999999999999 9999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
.+.++|++|++..+. .+|+.+|+.+....++.......+++.++++.++. ..++++.+|||||+||+++|+++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (218)
T cd03266 74 AEARRRLGFVSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARAL 151 (218)
T ss_pred HHHHhhEEEecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHH
Confidence 235899999975433 37999999876554443322334567788888773 34678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|||+..||. .+++.+.++.. ..|++|||++.+..
T Consensus 152 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred hcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999998 44455555432 34699999998765
No 89
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=7.7e-33 Score=247.70 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=154.0
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ml~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 72 (271)
T PRK13638 1 MLATSDLWFRYQDEPVL-----KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGL 72 (271)
T ss_pred CeEEEEEEEEcCCcccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCH
Confidence 46788999999877777 888 9999999999999999999999999999999 9999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+..++|++|++..... ..++.+|+.+.....+.......+++.++++.++ ...+.++.+|||||+||+++|+++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 73 LALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred HHHHhheEEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 1348999998642222 2467888877544443322222345667777776 345677889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|||+..||. .+++.+.++.. ..|++|||++.+.. +++ |++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999 34455555432 24689999999865 444 78888898877643
No 90
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.1e-32 Score=242.80 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=153.0
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (242)
T cd03295 2 EFENVTKRYGGGKKAV-----NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL 73 (242)
T ss_pred EEEEEEEEeCCcceEe-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence 56788899987 5666 888 9999999999999999999999999999999 9999999887542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCchhhhhhhc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+||+||+||+++|++++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 74 RRKIGYVIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred hcceEEEccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 235899999975443 379999998765443332222345677888888743 46778899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+|+++++|+|+..+|. .+++.+.++.+ ..|++||+++.+.. +++ |++++.|+++++.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999998 34455555432 24699999998765 444 7888888777653
No 91
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.98 E-value=1.5e-32 Score=241.66 Aligned_cols=197 Identities=15% Similarity=0.128 Sum_probs=154.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
++++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|....
T Consensus 1 ~~i~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~ 72 (242)
T TIGR03411 1 PILYLEGLSVSFDGFKAL-----NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEH 72 (242)
T ss_pred CeEEEEeeEEEcCCeEEe-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHH
Confidence 457889999999877667 888 9999999999999999999999999999999 99999999885431
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcC--------CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--------APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~--------~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
..++|++|++..++ .+|+.+|+.+...... .......+++.++++.++. ..+..+..|||||+|
T Consensus 73 ~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q 150 (242)
T TIGR03411 73 QIARAGIGRKFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ 150 (242)
T ss_pred HHHhcCeeEeccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 24899999865443 3799999987543110 1111234466778887773 346778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|+|+..||. .+++.++++.. ..|++||+++++.. +++ |++++.|+++++.
T Consensus 151 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 99999999999999999999999999 34455554433 34699999999876 444 7888888877764
No 92
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=1.1e-32 Score=242.26 Aligned_cols=195 Identities=17% Similarity=0.166 Sum_probs=153.3
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~l~~~~~~~~il-----~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (240)
T PRK09493 2 IEFKNVSKHFGPTQVL-----HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER 73 (240)
T ss_pred EEEEeEEEEECCeEEe-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence 5778999999877777 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+... ..+.......+++.++++.++. ..+.++..||+||+||+++|+++
T Consensus 74 ~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 74 LIRQEAGMVFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred HHhhceEEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 234899999865443 3799999977532 2222222234456778887773 34678889999999999999999
Q ss_pred ccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+.+|+++++|+++..+|.. +++.+.++.+ ..|++||+++++.. |++ |++++.|++.++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999993 4444444432 24699999999865 444 7888888877754
No 93
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-32 Score=244.14 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=154.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~ 73 (258)
T PRK13548 2 MLEARNLSVRLGGRTLL-----DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAE 73 (258)
T ss_pred eEEEEeEEEEeCCeeee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHH
Confidence 47788999999887777 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhc-
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG- 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~- 198 (287)
...++|++|++...+ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+|||||+||+++|++++
T Consensus 74 ~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 74 LARRRAVLPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred hhhheEEEccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 234899999965433 37999998875432222112233456777877763 457788899999999999999999
Q ss_pred -----cCccEEEEcCcccCCCh----hhHHHHHHhh-c---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 199 -----LQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 199 -----~~a~~li~d~~~lllDe----~~~~~l~~~~-~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
.+|+++++|+|+..||. .+.+.+.++. . .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 58999999999999998 3445555554 2 24699999998875 544 78888888877643
No 94
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.2e-32 Score=237.42 Aligned_cols=178 Identities=15% Similarity=0.033 Sum_probs=141.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+.++ +++ +.+++| +++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 i~~~~~~~~~~~~~~l-----~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (211)
T cd03264 1 LQLENLTKRYGKKRAL-----DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLR 71 (211)
T ss_pred CEEEEEEEEECCEEEE-----cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHH
Confidence 3567889999877677 888 999999 999999999999999999999999 9999999988643 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+||+||+||+++|++++.+|
T Consensus 72 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 72 RRIGYLPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred hheEEecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 45899999976433 37999999876544433322234566777877763 346788899999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+++++|||+..+|.. +++.++++.. ..|++|||++++..
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~ 194 (211)
T cd03264 150 SILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVES 194 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH
Confidence 999999999999993 3344444432 24699999998765
No 95
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-32 Score=237.29 Aligned_cols=179 Identities=16% Similarity=0.165 Sum_probs=142.9
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---C
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~ 123 (287)
++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il-----~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~ 72 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTAL-----EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPG 72 (220)
T ss_pred CeEEEEEEEcCCCCcceEEE-----eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccc
Confidence 356788899976 5666 888 9999999999999999999999999999999 9999999887543 3
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++..+. .+|+.+|+.+....++.......+++.++++.++. ..++.+..|||||+||+++|++++.+|
T Consensus 73 ~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 73 PDRGYVFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred CcEEEEeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 46899999975433 37999999876544443322334567778888773 346778899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++++|||+..||. .+++.+.++.. ..|++||+++++..
T Consensus 151 ~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (220)
T cd03293 151 DVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVF 197 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 99999999999999 45555555432 24699999998754
No 96
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.7e-33 Score=248.02 Aligned_cols=200 Identities=18% Similarity=0.189 Sum_probs=158.6
Q ss_pred CCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+. +.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~ 74 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYAL-----KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEE 74 (279)
T ss_pred CceEEEEEEEEEeCCCCccce-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcC
Confidence 467899999999974 4566 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++...+. ..|+.+|+.+.....+.+.....+++.++++.++ ...+..+..|||||+||++||+
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 75 TVWDVRRQVGMVFQNPDNQFV-GATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred cHHHHhhheEEEEeCHHHhcc-cccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHH
Confidence 2358999999632222 2699999987655444333333456777888766 3456788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|++|++|+++..||. .+++.++++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999 45555655543 23689999999865 444 78888898877653
No 97
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.6e-32 Score=250.76 Aligned_cols=201 Identities=14% Similarity=0.098 Sum_probs=157.8
Q ss_pred CCCCccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
...++++++++++.|+.. .++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L-----~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~ 88 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVAL-----NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDI 88 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCE
Confidence 455789999999999742 355 888 9999999999999999999999999999999 99999998863
Q ss_pred CC------------------------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC
Q 023126 121 KP------------------------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 121 ~~------------------------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 175 (287)
.. .+.++|++|++. .++. .|+.+|+.++....+.+......++.++++.++..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 89 YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred EcccccccccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC
Confidence 21 234899999863 3333 59999998765444333233345667788888742
Q ss_pred ---CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HH
Q 023126 176 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 176 ---~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv 242 (287)
.+..+.+|||||+||++||++++.+|++|++|+++..||. .+++.+.++.. .+|++|||++++.. |+
T Consensus 167 ~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri 246 (320)
T PRK13631 167 DSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEV 246 (320)
T ss_pred hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEE
Confidence 4677889999999999999999999999999999999999 34444444432 24699999998765 54
Q ss_pred h----hccccCCChHHHHH
Q 023126 243 L----KRHISTGKPPDVAK 257 (287)
Q Consensus 243 ~----gr~v~~G~~~ev~~ 257 (287)
+ |++++.|+++++..
T Consensus 247 ~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 247 IVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 4 89999999887643
No 98
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.97 E-value=2.2e-32 Score=241.41 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=153.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~-- 122 (287)
+++++++++.|+...++ +++ +++++||+++|+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~ 72 (247)
T TIGR00972 1 AIEIENLNLFYGEKEAL-----KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYD 72 (247)
T ss_pred CEEEEEEEEEECCeeee-----cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEccc
Confidence 46788999999877666 888 9999999999999999999999999999999 98 99999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhccC------CCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~ 187 (287)
...++|++|++.. +. .|+.+|+.+.....+. ......+++.++++.++.. .+.++.+|||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 73 KKIDVVELRRRVGMVFQKPNP-FP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred cccchHHHHhheEEEecCccc-CC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 2358999998643 32 7999999876544332 1122234567777777643 356788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+|+..||. .+++.+.++.+ ..|++|||++.+.. |++ |++++.|++++
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444444432 34699999998866 554 88888898887
Q ss_pred HH
Q 023126 255 VA 256 (287)
Q Consensus 255 v~ 256 (287)
+.
T Consensus 230 ~~ 231 (247)
T TIGR00972 230 IF 231 (247)
T ss_pred HH
Confidence 64
No 99
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.3e-32 Score=242.08 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=154.4
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +++.+|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i 73 (253)
T PRK14267 2 KFAIETVNLRVYYGSNHVI-----KGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNI 73 (253)
T ss_pred cceEEEEeEEEEeCCeeee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEc
Confidence 4578899999999887777 888 9999999999999999999999999999998 74 99999887542
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
...++|++|++..++ .+|+.+|+.+.....+. +.....+++.++++.++. ..+.++.+||
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS 151 (253)
T PRK14267 74 YSPDVDPIEVRREVGMVFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS 151 (253)
T ss_pred cccccChHHHhhceeEEecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence 135899999965443 37999999876443322 111223455667776653 2456788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|||+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++++.. |++ |++++.|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999998 34444444432 34699999998765 444 88888898
Q ss_pred hHHHH
Q 023126 252 PPDVA 256 (287)
Q Consensus 252 ~~ev~ 256 (287)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 88764
No 100
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-32 Score=241.93 Aligned_cols=198 Identities=16% Similarity=0.176 Sum_probs=154.4
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (241)
T PRK10895 2 ATLTAKNLAKAYKGRRVV-----EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH 73 (241)
T ss_pred ceEEEeCcEEEeCCEEEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 368889999999877777 888 9999999999999999999999999999999 9999999887432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++..+. .+|+.+|+.+.....+ ........++.++++.++. ..+.++.+||+||+||+++|++
T Consensus 74 ~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 74 ARARRGIGYLPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHhCeEEeccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 235899999965443 3799999876543221 1112234456777877763 3467788999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+|+..+|. .+++.+.++.. ..|++||+++.+.. +++ |++++.|+++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999998 33444444432 24689999987766 443 78888888877643
No 101
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=3.5e-32 Score=234.54 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=139.7
Q ss_pred ccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+. +.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~~~~l~~~~~~~~~~il-----~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYPDGARPAL-----DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecCCCCeeee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHH
Confidence 35788888876 5666 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCC-CCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~-~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++.. ++ .+|+.+|+.+.....+.......+++.++++.++. ..++++..|||||+||+++|+|++
T Consensus 73 ~~~~i~~~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 73 LRRKVGLVFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred HHhhceEEecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 2358999999632 33 37999999775443332222233456777877773 346788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~ 199 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLE 199 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999998 34455555543 34699999998764
No 102
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.97 E-value=1.8e-32 Score=235.97 Aligned_cols=175 Identities=16% Similarity=0.071 Sum_probs=141.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 l~~~~l~~~~~~~~~l-----~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYGKKRVL-----DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALR 72 (208)
T ss_pred CEEEEEEEEECCeEeE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHh
Confidence 3577899999877777 888 9999999999999999999999999999999 9999999988653 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+....++. ..+++.++++.++. ..++++.+||+||+||+++|++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 73 RIGALIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred hEEEecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965433 37999999876543331 34566777777763 4467788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++|||+..||. .+++.+.++.. ..|++|||++.+..
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQK 191 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 9999999999998 34444554432 24689999998865
No 103
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.97 E-value=2.5e-32 Score=235.90 Aligned_cols=180 Identities=13% Similarity=0.057 Sum_probs=142.0
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.| +.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~il-----~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAAL-----HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred CEEEEeeeEEeCCCceee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHH
Confidence 36788999999 455666 888 9999999999999999999999999999999 9999999887532
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+.+|||||+||+++|+
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150 (214)
T ss_pred HHHHHHhheEEEecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 235899999975433 37999999876544332222234566778887773 345677899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++.+|+++++|||+..+|. .+++.++++.+ ..+++||+++++..
T Consensus 151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 202 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999 34455555432 24699999998764
No 104
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.5e-32 Score=239.70 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=154.7
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
...|+++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 2 ~~~~~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 76 (253)
T PRK14242 2 ASPPKMEARGLSFFYGDFQAL-----HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76 (253)
T ss_pred CCCcEEEEeeeEEEECCeeee-----cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcc
Confidence 345789999999999877667 888 999999999999999999999999999986300 04799998887542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++.. +. .|+.+|+.+.....+... ....+++.+.++.++. ..+.++.+||||
T Consensus 77 ~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 77 DPHVDVVELRRRVGMVFQKPNP-FP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred ccccCHHHHhhcEEEEecCCCC-Cc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 2358999999643 33 489999987654433221 1224456677777663 235678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++||++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999 34444554432 34689999999865 544 7888888887
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 234 ~~~ 236 (253)
T PRK14242 234 QIF 236 (253)
T ss_pred HHH
Confidence 764
No 105
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.3e-32 Score=240.68 Aligned_cols=198 Identities=14% Similarity=0.014 Sum_probs=154.7
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+++.++ +++ +++++|+++||+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~ 73 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVL-----DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF 73 (250)
T ss_pred ceEEEEeeEEEECCeeee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence 357899999999887777 888 9999999999999999999999999999987 5 699999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++..++ .+|+.+|+.+.....+. ......+.+.++++.++. ..+..+.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 74 KMDVIELRRRVQMVFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred cCCHHHHhccEEEEeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 235899999975433 37999999876433222 112223456777877763 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. +++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999 34444544432 24699999998765 444 78888888887
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14247 232 VFT 234 (250)
T ss_pred HHc
Confidence 643
No 106
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-32 Score=245.82 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=154.5
Q ss_pred ccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+ ...++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ml~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 72 (274)
T PRK13644 1 MIRLENVSYSYPDGTPAL-----ENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKL 72 (274)
T ss_pred CEEEEEEEEEcCCCCcee-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccH
Confidence 367889999995 44566 888 9999999999999999999999999999999 9999999887543
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++...+. ..|+.+|+.+....++.......+++.++++.++ ...+.++..||+||+||++||+++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 151 (274)
T PRK13644 73 QGIRKLVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL 151 (274)
T ss_pred HHHHhheEEEEEChhhhcc-cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 1348999998643222 2699999987654443332233455677777777 345678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|+++..||. .+++.+.++.+ ..+++|||++.+.. |++ |++++.|+++++..
T Consensus 152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999998 45556655543 24689999999854 444 78888888887643
No 107
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=2.8e-32 Score=234.30 Aligned_cols=175 Identities=16% Similarity=0.026 Sum_probs=139.0
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----Cce
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDV 125 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~ 125 (287)
+++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|... .+.
T Consensus 1 ~~~~l~~~~~~~~~~l-----~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKKGTEIL-----DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKS 72 (205)
T ss_pred CcccEEEEeCCcCcee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcc
Confidence 35788899987 6666 888 9999999999999999999999999999999 9999999888653 245
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|++|++..... .+|+.+|+.+.....+ ...+++.++++.++. ..+.++.+||+||+||+++|++++.+|++
T Consensus 73 i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 73 IGYVMQDVDYQLF-TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred eEEEecChhhhhh-hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 8999999632222 2699999977543322 223567788888773 45678889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++|||+..||. .+++.++++.+ ..+++|||++.+..
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~ 191 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAK 191 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999 34444544432 24699999998754
No 108
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-32 Score=247.70 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=155.8
Q ss_pred cccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+. +.++ +++ ++|++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~ 74 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAI-----HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHK 74 (286)
T ss_pred EEEEEEEEEECCCCccccCce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccc
Confidence 678899999964 2466 888 9999999999999999999999999999999 9999999987542
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~q 189 (287)
...++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++.. .+.++.+|||||+|
T Consensus 75 ~~~~~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~q 152 (286)
T PRK13646 75 TKDKYIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMR 152 (286)
T ss_pred cccchHHHHHhheEEEecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 235899999863 2332 48999998865544443333445677888888743 35678899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
|+++|++++.+|+++++|+++..||. .+++.++++.+ .++++|||++++.. |++ |++++.|++.+
T Consensus 153 rv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 232 (286)
T PRK13646 153 KIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKE 232 (286)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999 44455555432 24699999999865 554 88999999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 233 ~~~ 235 (286)
T PRK13646 233 LFK 235 (286)
T ss_pred HHh
Confidence 654
No 109
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.97 E-value=1.9e-32 Score=244.73 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=154.8
Q ss_pred CCccccCcccccccc---------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC
Q 023126 49 QPVFGKTRSLVQNKT---------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~---------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~ 118 (287)
.++++++++++.|+. ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~ 73 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAV-----KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLID 73 (267)
T ss_pred cceEEEeceEEEecCCCCccccccccee-----eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEEC
Confidence 457899999999963 2455 888 9999999999999999999999999999999 999999988
Q ss_pred CCCC--------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 119 QVKP--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 119 ~~~~--------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
|... ...++|++|++.....+.+++.+++.+..... ........+.+.++++.++. ..+.++.+||+|
T Consensus 74 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 74 DHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred CEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHH
Confidence 7542 13589999996433333468888887654432 22222233456778888774 235677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+++|++++.+|++|++|||+..||. .+++.+.++.+ .+|++||+++.+.. |++ |++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999 34455555432 24699999999875 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 234 ~~~~~~ 239 (267)
T PRK15112 234 TADVLA 239 (267)
T ss_pred HHHHhc
Confidence 877654
No 110
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-32 Score=244.54 Aligned_cols=198 Identities=14% Similarity=0.111 Sum_probs=156.3
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++.|+ ...++ +++ +++++||++||+|+||||||||+++|+|+++ |++|+|.++|....
T Consensus 2 ~~l~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEAL-----NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENI 73 (277)
T ss_pred ceEEEEEEEEEeCCCCcee-----eEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 4578899999995 44466 888 9999999999999999999999999999999 99999998885432
Q ss_pred ----ceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 124 ----DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 124 ----~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
..++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++ ...++.+..||+||+||+++|++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIFS--PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred HHHHhheEEEecCccccccc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 34899999963 2332 699999987654433332223345677788776 34577888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+++..||. .+++.++++.. .++++||+++++.. |++ |++++.|+++++..
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999998 44455555432 24699999999876 554 88999999888754
No 111
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.97 E-value=4e-32 Score=235.74 Aligned_cols=179 Identities=14% Similarity=0.042 Sum_probs=140.4
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 l~~~~v~~~~~~~~~~~~~l-----~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~ 73 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVL-----KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLS 73 (221)
T ss_pred EEEEeeeEEccCCCcceEeE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcC
Confidence 567889999964 3456 888 9999999999999999999999999999999 9999999887532
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..+. .+|+.+|+.+.............+++.++++.++. ..++++.+|||||+||++
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 151 (221)
T TIGR02211 74 SNERAKLRNKKLGFIYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVA 151 (221)
T ss_pred HhHHHHHHHhcEEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 135899999965433 37999999875433322222234456778887773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++++..
T Consensus 152 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 207 (221)
T TIGR02211 152 IARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK 207 (221)
T ss_pred HHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 99999999999999999999998 44455555432 24699999998743
No 112
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.9e-32 Score=241.47 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=155.0
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
..++++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 9 ~~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~ 80 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQAL-----KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGED 80 (258)
T ss_pred cceeEEEeeeEEEeCCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEE
Confidence 45689999999999877777 888 9999999999999999999999999999987 5 79999887743
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
. ...++|++|++.. +. +|+.+|+.+....++.......+++.++++.++. ..+.++..|||
T Consensus 81 i~~~~~~~~~~~~~i~~v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 157 (258)
T PRK14268 81 IYEPDVDVVELRKNVGMVFQKPNP-FP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSG 157 (258)
T ss_pred cccccchHHHHhhhEEEEecCCcc-Cc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCH
Confidence 2 2348999998653 32 6999999876544433222223356667776653 24567889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+|+++++|+++..+|. .+++.++++.. .+|++|||++++.. |++ |++++.|++
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 237 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999 34444544432 34699999999866 444 788888988
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 238 ~~~~ 241 (258)
T PRK14268 238 RQIF 241 (258)
T ss_pred HHHh
Confidence 8764
No 113
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.97 E-value=4.9e-32 Score=236.13 Aligned_cols=182 Identities=18% Similarity=0.157 Sum_probs=139.9
Q ss_pred ccccCccccccccc----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKTS----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+.+ .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKAL-----DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKL 72 (228)
T ss_pred CeEEEeeeEeccCCCcceeee-----cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccc
Confidence 35678899999765 566 888 9999999999999999999999999999999 9999999887532
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc-hHHH-HHHHHHHhcc---CCCCCCCCCCcccCC
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLL-LLNCLKNLRN---QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~-~~~~-~~~~l~~l~~---~~~~~~~~lSgG~~q 189 (287)
...++|++|++.....+.+|+.+|+.+....++..... ..+. +.++++.++. ..+.++.+||+||+|
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 152 (228)
T cd03257 73 SRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQ 152 (228)
T ss_pred chhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHH
Confidence 23589999997432233489999998765443322111 1122 2466777664 246778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++|++++.+|+++++|||+..||. .+++.+.++.. .+|++|||++.+..
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 211 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAK 211 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999998 34455555432 24699999998764
No 114
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.6e-32 Score=240.63 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=144.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---Ccee
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 126 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i 126 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...+
T Consensus 1 ml~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 72 (255)
T PRK11248 1 MLQISHLYADYGGKPAL-----EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAER 72 (255)
T ss_pred CEEEEEEEEEeCCeeeE-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcE
Confidence 36788999999876666 888 9999999999999999999999999999999 9999999887543 2348
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++..|||||+||+++|++++.+|++|
T Consensus 73 ~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 73 GVVFQNEGLLP--WRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred EEEeCCCccCC--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999965433 37999999876544333322234567788888873 346678899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++|+|+..||. .+++.+.++.. ..|++|||++.+..
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~ 194 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVF 194 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999 44555555422 24699999998866
No 115
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.5e-32 Score=269.01 Aligned_cols=202 Identities=16% Similarity=0.133 Sum_probs=160.3
Q ss_pred CCCccccCcccccccc-----------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 48 AQPVFGKTRSLVQNKT-----------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
..++++++++++.|+. ..++ +++ |.|++|+++||+|+||||||||+++|+|+++ |++|+|
T Consensus 310 ~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I 381 (623)
T PRK10261 310 GEPILQVRNLVTRFPLRSGLLNRVTREVHAV-----EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEI 381 (623)
T ss_pred CCceEEEeeeEEEEcCCCccccccCCceEEE-----eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEE
Confidence 3478999999999962 2344 888 9999999999999999999999999999999 999999
Q ss_pred ccCCCCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhcc---CCCCCC
Q 023126 116 FDSQVKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---QGSVYA 180 (287)
Q Consensus 116 ~~~~~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~---~~~~~~ 180 (287)
.++|.+. ...++|++|+++....+.+|+.+|+.+.....+.. .....+++.++++.++. ..++++
T Consensus 382 ~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 382 IFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred EECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 9887532 23589999997533334589999998765443321 22234567788888875 247788
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+||||||||++||+|++.+|++|++||++..||. .+++.|+++.+ ..|++|||++++.. |++ |+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999 34445544433 24799999999877 554 89
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
+++.|+++++..
T Consensus 542 iv~~g~~~~i~~ 553 (623)
T PRK10261 542 IVEIGPRRAVFE 553 (623)
T ss_pred EEEecCHHHHhc
Confidence 999999888753
No 116
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.3e-32 Score=239.96 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=154.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
..++++++++++.|+...++ +++ +.+++|++++|+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 4 ~~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~ 75 (254)
T PRK14273 4 NEAIIETENLNLFYTDFKAL-----NNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKN 75 (254)
T ss_pred CCceEEEeeeEEEeCCceee-----cceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEe
Confidence 34588999999999877666 888 9999999999999999999999999999998 7 48999887743
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
. +..++|++|++..+ . +|+++|+.+.....+.... ...+++.+.++.++. ..+.++.+||
T Consensus 76 i~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 152 (254)
T PRK14273 76 IYSNNFDILELRRKIGMVFQTPNPF-L--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLS 152 (254)
T ss_pred cccccccHHHHhhceEEEeeccccc-c--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCC
Confidence 2 23489999996543 2 7999999876543332111 123455666666653 3467788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|||+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. |++ |++++.|+
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999 34444555432 24689999999866 544 78888898
Q ss_pred hHHHH
Q 023126 252 PPDVA 256 (287)
Q Consensus 252 ~~ev~ 256 (287)
+.++.
T Consensus 233 ~~~~~ 237 (254)
T PRK14273 233 TDELF 237 (254)
T ss_pred HHHHH
Confidence 88764
No 117
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.3e-32 Score=240.55 Aligned_cols=198 Identities=17% Similarity=0.176 Sum_probs=154.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
+++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAV-----NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred CceEEEeeEEEEECCEEEE-----EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCH
Confidence 5679999999999877777 888 9999999999999999999999999999999 9999999888542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhc----------CCC---C--CchHHHHHHHHHHhc--cCCCCCCC
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----------GAP---W--TFNPLLLLNCLKNLR--NQGSVYAP 181 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----------~~~---~--~~~~~~~~~~l~~l~--~~~~~~~~ 181 (287)
+..++|++|++..++ .+|+.+|+.+..... +.+ . ....+.+.++++.++ ...+.++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFR--EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAG 152 (255)
T ss_pred HHHHhcCeEEeccCcccCC--CCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChh
Confidence 123788999875443 379999998753211 100 0 112235667777776 34577888
Q ss_pred CCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hcc
Q 023126 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~ 246 (287)
+||+||+||+++|++++.+|+++++|+|+..||. .+++.|.++.+ .+|++||+++++.. +++ |++
T Consensus 153 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 153 NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP 232 (255)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999998 34455555432 24699999999876 444 788
Q ss_pred ccCCChHHHH
Q 023126 247 ISTGKPPDVA 256 (287)
Q Consensus 247 v~~G~~~ev~ 256 (287)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (255)
T PRK11300 233 LANGTPEEIR 242 (255)
T ss_pred EecCCHHHHh
Confidence 8888877653
No 118
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-32 Score=245.58 Aligned_cols=200 Identities=15% Similarity=0.177 Sum_probs=157.9
Q ss_pred CCccccCcccccccc------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 49 QPVFGKTRSLVQNKT------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.++++++++++.|+. +.++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~vl-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~ 73 (280)
T PRK13633 2 NEMIKCKNVSYKYESNEESTEKLAL-----DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLD 73 (280)
T ss_pred CceEEEeeeEEEcCCCCCCCCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEe
Confidence 467899999999964 3466 888 9999999999999999999999999999999 999999988754
Q ss_pred C---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCc
Q 023126 122 P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 122 ~---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qr 190 (287)
. .+.++|++|++...... .++.+|+.+.....+.......+++.++++.++ ...++++.+||+||+||
T Consensus 74 i~~~~~~~~~~~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 74 TSDEENLWDIRNKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred ccccccHHHHhhheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence 2 23589999996322222 578899887655444333333456677888777 34567888999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
++||++++.+|+++++|+++..||. .+++.+.++.+ .++++|||++++.. |++ |++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999 45555555532 24689999999865 444 7888899988875
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 233 ~ 233 (280)
T PRK13633 233 K 233 (280)
T ss_pred c
Confidence 4
No 119
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.1e-32 Score=239.80 Aligned_cols=195 Identities=14% Similarity=0.071 Sum_probs=151.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (242)
T PRK11124 2 SIQLNGINCFYGAHQAL-----FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred EEEEEeeEEEECCeeeE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccc
Confidence 46788999999877767 888 9999999999999999999999999999999 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+.. ...+.......+++.+.++.++. ..+..+..|||||+||++
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 74 DKAIRELRRNVGMVFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred hhhHHHHHhheEEEecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 234899999865443 379999987532 22332222233456777877773 346778899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+|++++.+|+++++||++..||.. +++.+.++.+ ..+++|||.+++.. +++ |++++.|+++++
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999993 3344444332 24699999999865 444 788888877664
No 120
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.97 E-value=5.1e-32 Score=240.52 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=155.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
..++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 4 ~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 75 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVL-----KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDK 75 (257)
T ss_pred ccEEEeeeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEccccccc
Confidence 457899999999887777 888 9999999999999999999999999999999 9999998887432
Q ss_pred ---------------CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhccC---CCCCCCCC
Q 023126 123 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 183 (287)
Q Consensus 123 ---------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~l 183 (287)
...++|++|++..++ .+|+++|+.+... ..+.......+++.++++.++.. .+.++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 153 (257)
T PRK10619 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL 153 (257)
T ss_pred ccccccccchHHHHHhhceEEEecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence 235899999965433 3799999976432 22222223345677888888742 25678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|+||+||+++|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++|||++++.. |++ |++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 999999999999999999999999999999993 3444444432 24699999999876 554 788888
Q ss_pred CChHHHH
Q 023126 250 GKPPDVA 256 (287)
Q Consensus 250 G~~~ev~ 256 (287)
|+++++.
T Consensus 234 ~~~~~~~ 240 (257)
T PRK10619 234 GAPEQLF 240 (257)
T ss_pred CCHHHhh
Confidence 8877764
No 121
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=3.3e-32 Score=241.75 Aligned_cols=189 Identities=14% Similarity=0.103 Sum_probs=150.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+.+++++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+++...
T Consensus 8 ~~~~~l~i~~l~~~~~~~~il-----~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~ 79 (257)
T PRK11247 8 NQGTPLLLNAVSKRYGERTVL-----NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEA 79 (257)
T ss_pred cCCCcEEEEEEEEEECCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHh
Confidence 456789999999999887777 888 9999999999999999999999999999999 9999998877532
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|++..++ .+|+.+|+.+... . ...+++.++++.++. ..+.++.+|||||+||+++|++++.+
T Consensus 80 ~~~i~~v~q~~~l~~--~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~ 151 (257)
T PRK11247 80 REDTRLMFQDARLLP--WKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHR 151 (257)
T ss_pred hCceEEEecCccCCC--CCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 345899999975433 3799999876421 1 123456777877773 34677889999999999999999999
Q ss_pred ccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 201 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 201 a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+++++|||+..||.. +.+.+.++.. ..|++|||++.+.. +++ |++++.|+
T Consensus 152 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 152 PGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 9999999999999983 4444454422 24699999998765 444 67766554
No 122
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5e-32 Score=226.95 Aligned_cols=198 Identities=17% Similarity=0.155 Sum_probs=162.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++|+++...++..+ +++ +.+++||+++|+||||||||||+|.|+|.+. |++|++.++|.+..
T Consensus 1 mi~a~nls~~~~Gr~ll-----~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~ 72 (259)
T COG4559 1 MIRAENLSYSLAGRRLL-----DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEE 72 (259)
T ss_pred CeeeeeeEEEeecceec-----cCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHH
Confidence 46788999999999999 999 9999999999999999999999999999999 99999999987532
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC--chHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~--~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.-++++|+...-|+ +||.|.+.+++.-++.... ++.+.+.+.+...+ ....+.+.+|||||||||.+|+.|
T Consensus 73 lA~~raVlpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 73 LARHRAVLPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHHhhhcccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 346889999765554 7999999988765543332 34444677777766 566788999999999999999997
Q ss_pred cc------CccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GL------QHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~------~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+. ..|.|++||++.-||- ..++..+++... ++.|-||++.+.. |++ ||+++.|+|++++.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 43 4568999999999998 456667777665 3588999999887 666 99999999999864
Q ss_pred H
Q 023126 258 W 258 (287)
Q Consensus 258 ~ 258 (287)
.
T Consensus 231 ~ 231 (259)
T COG4559 231 D 231 (259)
T ss_pred H
Confidence 3
No 123
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=6.4e-32 Score=244.55 Aligned_cols=206 Identities=17% Similarity=0.159 Sum_probs=165.8
Q ss_pred CCCccccCcccccccccchhhh------hhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLC------SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~------~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
..++++++++.+.|--+..++. +..|++ +++++|+.+||+|+||||||||-.+|.++++ +.|+|.+.|.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~----s~G~I~F~G~ 348 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP----SQGEIRFDGQ 348 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC----cCceEEECCc
Confidence 4456777777777754433221 233677 9999999999999999999999999999995 5599999886
Q ss_pred CC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 121 KP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 121 ~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
+. ++.+.++|||+|.-.++.|||.+.+..++..+.. ..++..+++.++|.++|. ..++++.++|
T Consensus 349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFS 428 (534)
T COG4172 349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFS 428 (534)
T ss_pred cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccC
Confidence 53 3458999999999989999999999998877652 344556688899999983 4578999999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----C----ceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~----~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||+||++||+|++.+|+.+++|+++..||-.+...+.+++. . .+|||||+.++.. +++ |+++++
T Consensus 429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~ 508 (534)
T COG4172 429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508 (534)
T ss_pred cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee
Confidence 999999999999999999999999999999844444444332 2 3699999999987 555 999999
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
|+.+++..
T Consensus 509 G~~~~if~ 516 (534)
T COG4172 509 GPTEAVFA 516 (534)
T ss_pred CCHHHHhc
Confidence 99999764
No 124
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.97 E-value=5.1e-32 Score=241.62 Aligned_cols=199 Identities=14% Similarity=0.102 Sum_probs=155.3
Q ss_pred ccccCcccccccc---------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 51 VFGKTRSLVQNKT---------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 51 ~~~~~~~~~~~~~---------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+++++++++.|+. +.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~ 73 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVL-----TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQ 73 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEe-----eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCE
Confidence 4677888888852 4556 888 9999999999999999999999999999999 99999998875
Q ss_pred CC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC---CCCCCCCCCc
Q 023126 121 KP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 185 (287)
Q Consensus 121 ~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSg 185 (287)
.. ...++|++|++.....+.+|+.+|+.+..... ........+++.++++.++.. .+.++..|||
T Consensus 74 ~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 153 (265)
T TIGR02769 74 DLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSG 153 (265)
T ss_pred EccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCH
Confidence 32 23599999996422333479999987654432 222223345677888888742 4678889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||+||+++|++++.+|++|++||++..||.. +++.+.++.+ .+|++|||++.+.. +++ |++++.|
T Consensus 154 Ge~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 9999999999999999999999999999983 5555655532 24699999999865 444 7888889
Q ss_pred ChHHHHH
Q 023126 251 KPPDVAK 257 (287)
Q Consensus 251 ~~~ev~~ 257 (287)
+++++..
T Consensus 234 ~~~~~~~ 240 (265)
T TIGR02769 234 DVAQLLS 240 (265)
T ss_pred CHHHHcC
Confidence 8888653
No 125
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.6e-32 Score=238.90 Aligned_cols=198 Identities=11% Similarity=0.078 Sum_probs=153.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~l~i~~v~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~ 74 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAV-----EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLY 74 (258)
T ss_pred ccEEEeeEEEEECCEeee-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEecc
Confidence 478899999999877777 888 9999999999999999999999999999986 5 699999887542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|+...++ .+|+.+|+.+.....+. ......+++.++++.++. ..+.++.+||||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (258)
T PRK14241 75 GPGVDPVAVRRTIGMVFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG 152 (258)
T ss_pred ccccChHHHhcceEEEccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 134899999865443 37999999876543332 122223456667777653 345678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----------hccc
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----------KRHI 247 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----------gr~v 247 (287)
|+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. |++ |+++
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999998 34444544432 34699999999866 432 6788
Q ss_pred cCCChHHHHH
Q 023126 248 STGKPPDVAK 257 (287)
Q Consensus 248 ~~G~~~ev~~ 257 (287)
+.|+++++..
T Consensus 233 ~~~~~~~~~~ 242 (258)
T PRK14241 233 EIDDTEKIFS 242 (258)
T ss_pred ecCCHHHHHh
Confidence 8888877643
No 126
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.2e-32 Score=238.98 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=152.6
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+.+.++ +++ +.+++||++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQAL-----HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQT 74 (237)
T ss_pred ccEEEEEeEEEeeCCceee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCH
Confidence 3678999999999877777 888 9999999999999999999999999999999 9999999888542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHh---ccCCCCCCCCCCcccCCchhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL---RNQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|+...++ .+|+.+|+.+..... ......+.+.++++.+ ....+.++.+||+||+||+++|+
T Consensus 75 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFS--RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHHHHhCEEEeccCcccCC--CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence 234899999965443 379999987753221 1111223444555554 23445678899999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++.+|+++++|+|+..+|.. +++.+.++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999999999993 4444544432 24689999998776 544 7888899888764
No 127
>PRK10908 cell division protein FtsE; Provisional
Probab=99.97 E-value=5.5e-32 Score=235.22 Aligned_cols=179 Identities=14% Similarity=0.042 Sum_probs=142.3
Q ss_pred cccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 52 FGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 52 ~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++.| +.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 l~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~ 73 (222)
T PRK10908 2 IRFEHVSKAYLGGRQAL-----QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE 73 (222)
T ss_pred EEEEeeEEEecCCCeEE-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence 6778999999 556666 888 9999999999999999999999999999999 9999999887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++..++. +|+.+|+.+.....+.......+++.++++.++. ..++.+.+||+||+||+++|++
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (222)
T PRK10908 74 VPFLRRQIGMIFQDHHLLMD--RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARA 151 (222)
T ss_pred HHHHHhheEEEecCcccccc--ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHH
Confidence 2358999999754333 7999999876544433222233456677877763 3467788999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++.+|+++++|||+..||. .+++.+.++.+ ..+++|||++++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (222)
T PRK10908 152 VVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISR 202 (222)
T ss_pred HHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999999998 34555555432 24699999999875
No 128
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.97 E-value=4.9e-32 Score=239.92 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=152.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (252)
T TIGR03005 1 VRFSDVTKRFGILTVL-----DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNG 72 (252)
T ss_pred CEEEEEEEEeCCeeEE-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 3578899999877666 888 9999999999999999999999999999999 9999998877432
Q ss_pred -------------CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcc
Q 023126 123 -------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHG 186 (287)
Q Consensus 123 -------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG 186 (287)
.+.++|++|++..++ ..|+.+|+.+... ..+.......+++.++++.++. ..+..+.+||+|
T Consensus 73 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 73 PLVPADEKHLRQMRNKIGMVFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccccchhHHHHHhhCeEEEecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 235899999865443 3799999987532 2222222233456777877763 345677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+++|++++.+|+++++|+++..||. .+++.++++.+ ..|++|||++.+.. |++ |++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999998 34455555432 24699999999865 444 88888888
Q ss_pred hHHHH
Q 023126 252 PPDVA 256 (287)
Q Consensus 252 ~~ev~ 256 (287)
.+++.
T Consensus 231 ~~~~~ 235 (252)
T TIGR03005 231 PDEIF 235 (252)
T ss_pred HHHHh
Confidence 77764
No 129
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.9e-32 Score=242.49 Aligned_cols=199 Identities=15% Similarity=0.155 Sum_probs=155.2
Q ss_pred CCccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+ .+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~ 76 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNAL-----KNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKE 76 (271)
T ss_pred ceEEEEEeEEEEcCCCCccce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcC
Confidence 46789999999995 44566 888 9999999999999999999999999999999 9999999887542
Q ss_pred -----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 -----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
+..++|++|++. .++ .+|+.+|+.+.....+.......+++.++++.++. ..+..+..||+||+||++||
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 77 NLKEIRKKIGIIFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred CHHHHhcceEEEEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHH
Confidence 235899999963 233 27999999876543333222233456777887763 45778889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|+++++|+++..||. .+++.++++.+ ..|++||+++.+.. +++ |++++.|++.++..
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999 45555555532 34689999998754 333 77777887776543
No 130
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.3e-32 Score=243.36 Aligned_cols=197 Identities=17% Similarity=0.138 Sum_probs=154.7
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.|+. ..++ +++ +++++||++||+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~l~~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 1 ILETRDLKYSYPDGTEAL-----KGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred CEEEEEEEEEeCCCCeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccch
Confidence 3678899999963 4466 888 9999999999999999999999999999999 9999999888542
Q ss_pred ----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++. ..++++.+|||||+||+++|+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHH
Confidence 234899999963 2232 6999999875443332222334567778887773 456788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|+++++|+++..+|. .+++.+.++.+ .++++|||++.+.. |++ |++++.|+++++..
T Consensus 151 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999 34455555433 24699999999875 444 78888998888653
No 131
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=237.51 Aligned_cols=198 Identities=12% Similarity=0.033 Sum_probs=155.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~ 122 (287)
.|+++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i 73 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQAL-----NDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNI 73 (251)
T ss_pred ccEEEEEEeEEEECCeeee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEec
Confidence 5788999999999877767 888 9999999999999999999999999999987 6 789999887542
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|++..+ . +|+.+|+.+.....+... ....+++.++++.++. ..+.++..||+
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 74 YDKDVDVVELRKRVGMVFQKPNPF-P--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG 150 (251)
T ss_pred ccccccHHHHHhheEEEecCCCcC-C--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence 23489999996533 2 699999987654443311 1223455667776653 24567889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+++++++|+++..||. .+++.++++.+ ..|++||+++++.. |++ |++++.|++
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKT 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCH
Confidence 999999999999999999999999999999 34444554432 34699999998766 444 888889988
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 231 ~~~~~ 235 (251)
T PRK14270 231 EKIFL 235 (251)
T ss_pred HHHhc
Confidence 88643
No 132
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.1e-32 Score=267.24 Aligned_cols=202 Identities=17% Similarity=0.161 Sum_probs=160.4
Q ss_pred CCCCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.+.++++++++++.|+. ..++ +++ |++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 8 ~~~~~l~v~~l~~~y~~~~~~~~~l-----~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~ 79 (623)
T PRK10261 8 DARDVLAVENLNIAFMQEQQKIAAV-----RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKML 79 (623)
T ss_pred CCCceEEEeceEEEecCCCCceeEE-----EeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEE
Confidence 45678999999999963 3456 888 9999999999999999999999999999999 999998876521
Q ss_pred ----------------------CCceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhccC---
Q 023126 122 ----------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--- 175 (287)
Q Consensus 122 ----------------------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--- 175 (287)
....++|++|++.....+.+|+.+|+.+..... +.......+++.++|+.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 80 LRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred eccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChh
Confidence 013589999996322233489999999876542 333333446778889888852
Q ss_pred --CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HH
Q 023126 176 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 176 --~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv 242 (287)
.+.++.+|||||+||++||+|++.+|++|++||++..||. .+++.++++.+ .+|++|||++++.. |+
T Consensus 160 ~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri 239 (623)
T PRK10261 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRV 239 (623)
T ss_pred hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEE
Confidence 4678889999999999999999999999999999999999 45555555542 24799999999876 55
Q ss_pred h----hccccCCChHHHH
Q 023126 243 L----KRHISTGKPPDVA 256 (287)
Q Consensus 243 ~----gr~v~~G~~~ev~ 256 (287)
+ |++++.|++.++.
T Consensus 240 ~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 240 LVMYQGEAVETGSVEQIF 257 (623)
T ss_pred EEeeCCeecccCCHHHhh
Confidence 4 8888889887764
No 133
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=4.9e-32 Score=243.84 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=157.0
Q ss_pred CCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---cccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~---G~i~~~~~~~ 122 (287)
+.+++++++++.|+. +.++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++ |+|.++|...
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l-----~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPAL-----NDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITL 74 (282)
T ss_pred CceEEEEEEEEEcCCCCccce-----eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEEC
Confidence 457889999999964 3456 888 9999999999999999999999999999999 987 8998887543
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++...+. ..|+.+|+.+.....+.......+++.++++.++. ..+.++..||+||+||++
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFV-GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVA 153 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHH
Confidence 2358999999632222 37999999876544443322334557778887773 457788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++++.+|+++++|+++..||. .+++.+.++.. .++++||+++.+.. |++ |++++.|+++++..
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999 44455555432 24689999999854 443 88899999888754
No 134
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=238.47 Aligned_cols=200 Identities=12% Similarity=0.076 Sum_probs=155.7
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
..+++++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 8 ~~~~~l~i~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~p~~~~~G~i~~~g~ 79 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQHHAL-----KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ---MVPNVKLTGEMNYNGS 79 (259)
T ss_pred cCCceEEEeeEEEEECCeeeE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---CCCCCCCceEEEECCE
Confidence 567899999999999877777 888 9999999999999999999999999999986 4 6899988875
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSF 183 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~l 183 (287)
.. ...++|++|++..+ . .|+++|+.+....++... ....+++.++++.++. ..+.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~L 156 (259)
T PRK14274 80 NILKGKVDLVELRKNIGMVFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSL 156 (259)
T ss_pred EccccccCHHHHhhceEEEecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccC
Confidence 42 23489999996543 3 389999987654443221 1123345666776653 235678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
|+||+||+++|++++.+|+++++|+|+..||. .+++.+.++.. ..|++||+++.+.. |++ |++++.|
T Consensus 157 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 157 SGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999 34444444432 34699999998876 444 8888999
Q ss_pred ChHHHHH
Q 023126 251 KPPDVAK 257 (287)
Q Consensus 251 ~~~ev~~ 257 (287)
+++++..
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14274 237 DTNKMFS 243 (259)
T ss_pred CHHHHhh
Confidence 9888643
No 135
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.97 E-value=8.3e-32 Score=239.83 Aligned_cols=197 Identities=15% Similarity=0.075 Sum_probs=155.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~-- 122 (287)
+++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |+ +|+|.++|...
T Consensus 2 ~~~l~~~nl~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~ 73 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQAL-----HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQR 73 (262)
T ss_pred CcEEEEeeEEEEeCCeEEE-----ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccc
Confidence 5789999999999887777 898 9999999999999999999999999999998 86 49998888542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc--------CCCCCchHHHHHHHHHHhcc--CCCCCCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLRN--QGSVYAP 181 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--------~~~~~~~~~~~~~~l~~l~~--~~~~~~~ 181 (287)
...++|++|++..++ .+|+.+|+.+..... +.......+++.++++.++. ..++.+.
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 74 EGRLARDIRKSRANTGYIFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccchhHHHHHhheEEEcccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 124899999965433 489999997653210 11112234467788888773 3567888
Q ss_pred CCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hcc
Q 023126 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~ 246 (287)
+||+||+||+++|++++.+|++|++|+|+..||. .+++.+.++.. ..|++|||++.+.. |++ |++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 152 TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999998 44455555542 24689999998766 544 788
Q ss_pred ccCCChHHH
Q 023126 247 ISTGKPPDV 255 (287)
Q Consensus 247 v~~G~~~ev 255 (287)
++.|+++++
T Consensus 232 ~~~g~~~~~ 240 (262)
T PRK09984 232 FYDGSSQQF 240 (262)
T ss_pred EEeCCHHHh
Confidence 888988774
No 136
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=5e-32 Score=232.20 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=152.6
Q ss_pred cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCccc
Q 023126 62 KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 140 (287)
Q Consensus 62 ~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ 140 (287)
....++ +++ |++++||.+||+|+||||||||+|+|+|.++ |++|+|.+.|... ..+... .-++++
T Consensus 38 ~~~~aL-----~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~----~li~lg--~Gf~pe 103 (249)
T COG1134 38 AEFWAL-----KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVA----PLIELG--AGFDPE 103 (249)
T ss_pred ceEEEe-----cCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEe----hhhhcc--cCCCcc
Confidence 344555 777 9999999999999999999999999999999 9999999887532 122222 123446
Q ss_pred CCccccHHHHHHhcCCCCCchHHHHHHHHH--HhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhH
Q 023126 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW 218 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~--~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~ 218 (287)
+|.+||+.+.....|+...+..+++.++.+ .+++..+.++++||-||+-|++++.++..+|++|++|+.+...|+.+.
T Consensus 104 lTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 104 LTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred cchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHH
Confidence 999999999999998887777777776654 566889999999999999999999999999999999999999999555
Q ss_pred HHH----HHhh---cCceEEEeCHHHHHH---HHh----hccccCCChHHHHHHHHHh
Q 023126 219 KDV----SSMF---DEKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIEY 262 (287)
Q Consensus 219 ~~l----~~~~---~~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~~~~ 262 (287)
+.- .++. ...|+||||++.+.+ |++ |++...|.+++++..|...
T Consensus 184 ~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 184 EKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 433 3331 234699999999988 555 8999999999999887653
No 137
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=238.72 Aligned_cols=199 Identities=11% Similarity=0.038 Sum_probs=155.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
..++.++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 15 ~~~~~l~~~nl~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~ 86 (267)
T PRK14235 15 ATEIKMRARDVSVFYGEKQAL-----FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGE 86 (267)
T ss_pred CCCceEEEEeEEEEECCEEEE-----EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCE
Confidence 456789999999999987777 888 9999999999999999999999999999997 5 8999998874
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC--CCCchHHHHHHHHHHhccC------CCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPS 182 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~--~~~~~~~~~~~~l~~l~~~------~~~~~~~ 182 (287)
.. +..++|++|++..+ . .|+.+|+.+.....+. ......+++.++++.++.. .+.++.+
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 163 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPF-P--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG 163 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCC-C--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCccc
Confidence 32 23489999986533 2 4899999876543332 1122234567777777642 3567889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccC
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||||+||+++|++++.+|++|++|+|+..||.. +.+.+.++.. .+|++|||++.+.. +++ |++++.
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999993 4444444432 34699999999866 444 788888
Q ss_pred CChHHHH
Q 023126 250 GKPPDVA 256 (287)
Q Consensus 250 G~~~ev~ 256 (287)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14235 244 GDTEKMF 250 (267)
T ss_pred CCHHHHH
Confidence 8877764
No 138
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=7.2e-32 Score=240.68 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=154.4
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~l~i~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~ 81 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLL-----HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK 81 (265)
T ss_pred ceEEEeeEEEEECCEEEE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence 478999999999877777 888 9999999999999999999999999999999 9999999988542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhc-C---CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|+...++ .+|+.+|+.+..... + .......+++.++++.++. ..+.++.+|||||+||+++|
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 82 AFARKVAYLPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHhhheEEeccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 235899999854333 379999987642211 1 1111234456777877763 45678889999999999999
Q ss_pred hhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|+++++|+|+..||.. +++.+.++.. ..|++||+++++.. |++ |++++.|+++++.
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 9999999999999999999993 4555555532 24699999998875 444 7888888877754
No 139
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=248.61 Aligned_cols=187 Identities=15% Similarity=0.085 Sum_probs=149.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++ ++++.|+... + ++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~-~l~k~~~~~~-~------~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~ 70 (352)
T PRK11144 2 LEL-NFKQQLGDLC-L------TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC 70 (352)
T ss_pred eEE-EEEEEeCCEE-E------EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence 455 7888898632 2 46 9999999999999999999999999999999 9999998877431
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ .+|+.+|+.+.... ...+++.++++.++. ..++++.+|||||+||++||++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalara 142 (352)
T PRK11144 71 LPPEKRRIGYVFQDARLFP--HYKVRGNLRYGMAK------SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRA 142 (352)
T ss_pred cchhhCCEEEEcCCcccCC--CCcHHHHHHhhhhh------hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence 245899999965443 48999999875321 234567788888873 3577888999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|||+..||. .+++.++++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 143 L~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 143 LLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 9999999999999999998 34455555433 24799999998876 544 88889999988764
No 140
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.97 E-value=1.4e-31 Score=231.06 Aligned_cols=179 Identities=16% Similarity=0.132 Sum_probs=141.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (213)
T cd03262 1 IEIKNLHKSFGDFHVL-----KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNIN 72 (213)
T ss_pred CEEEEEEEEECCeEee-----cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHH
Confidence 3567899999877767 888 9999999999999999999999999999999 9999999887532
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+... ..+.......+++.++++.++. ..+.++.+||+||+||+++|+++
T Consensus 73 ~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 73 ELRQKVGMVFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHHhcceEEecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 235899999975443 3799999987543 2222222233456777877763 34678889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|+|+..||. .+++.+.++.+ ..|++||+++.+..
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999998 34455555433 24689999998754
No 141
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.97 E-value=1.6e-31 Score=229.51 Aligned_cols=175 Identities=11% Similarity=0.002 Sum_probs=139.9
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----------
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------- 122 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---------- 122 (287)
++++++.|+++.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~ 72 (206)
T TIGR03608 1 LKNISKKFGDKIIL-----DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASK 72 (206)
T ss_pred CcceEEEECCEEEE-----eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHH
Confidence 46788889877777 888 9999999999999999999999999999999 9999999887641
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
.+.++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++ ...+.++.+||+||+||+++|++++
T Consensus 73 ~~~~~i~~~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 73 FRREKLGYLFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHHhCeeEEecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 235899999965433 3799999988654433333334556778888877 3456788899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.+|+++++|+|+..||. .+++.++++.. ..|++||+++..
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 197 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA 197 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999998 34455554432 246899999864
No 142
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.7e-32 Score=243.04 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=152.6
Q ss_pred CccccCcccccccccc-----hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSL-----KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~-----~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..++++++++.|+.+. ++ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~ 76 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKAL-----NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIP 76 (289)
T ss_pred ceEEEEEEEEEeCCCCcccccee-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcc
Confidence 4578899999997642 55 888 9999999999999999999999999999999 9999998877431
Q ss_pred ------------CceeEEEeCCCCC-CCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 123 ------------PDVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 123 ------------~~~i~~v~qd~~~-~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
...++|++|++.. ++. .|+.+|+.+.....+.......+++.++++.++. ..++++.+||+|
T Consensus 77 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~G 154 (289)
T PRK13645 77 ANLKKIKEVKRLRKEIGLVFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGG 154 (289)
T ss_pred ccccccccHHHHhccEEEEEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHH
Confidence 2358999999632 232 5899999876543332222223456667777664 346778899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+++|+|++.+|++|++|||+..||. .+++.+.++.. .+|++||+++++.. +++ |++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999 34444555432 24699999998766 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 877643
No 143
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.97 E-value=1.4e-31 Score=231.09 Aligned_cols=178 Identities=16% Similarity=0.036 Sum_probs=140.3
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~l~~~~~~~~~~l-----~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 73 (214)
T cd03292 2 EFINVTKTYPNGTAAL-----DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAI 73 (214)
T ss_pred EEEEEEEEeCCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 56788888864 4566 888 9999999999999999999999999999999 9999998887532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||+++|+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 74 PYLRRKIGVVFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred HHHHHheEEEecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 134899999965443 37999999886544433222234466778887763 34667889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|||+..||. .+++.++++.+ ..|++||+++.+..
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~ 201 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDT 201 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 999999999999999998 34455555432 24699999998764
No 144
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-31 Score=234.39 Aligned_cols=194 Identities=16% Similarity=0.104 Sum_probs=150.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.. . .++ +++.+|+++||+||||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 2 l~~~~l~~~~~~~--~-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~ 71 (232)
T PRK10771 2 LKLTDITWLYHHL--P-----MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR 71 (232)
T ss_pred eEEEEEEEEECCc--c-----ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence 5788999999742 2 256 9999999999999999999999999999999 9999999888642 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..+. .+|+.+|+.+.............+++.++++.++ ...++++.+||+||+||+++|++++.+|+
T Consensus 72 ~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 72 PVSMLFQENNLFS--HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred cEEEEeccccccc--CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999965443 3799999876432110111223456777888877 34577888999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++|+|+..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 150 lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~ 219 (232)
T PRK10771 150 ILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219 (232)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999 34455555532 24699999998765 444 78888888777653
No 145
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=1.5e-31 Score=236.83 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=153.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----C-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-----~- 122 (287)
++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.. .
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGC-----RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELY 73 (253)
T ss_pred ceEEEeeeEEEeCCceEe-----ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEecccccccccc
Confidence 578899999999876666 888 9999999999999999999999999999999 999999987753 1
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
.+.++|++|++.......+++.+|+.+....... ......+.+.++++.++. ..+..+..|||||
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 74 QLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred cCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence 1248999999643233336777887654322221 111234566778888874 3456788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
+||+++|++++.+|+++++||++..||. .+++.+.+..+ ..|++||+++.+.. +++ |++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999998 34444554432 24699999999875 443 788888887
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 234 ~~~~~ 238 (253)
T TIGR02323 234 DQVLD 238 (253)
T ss_pred HHHhc
Confidence 77643
No 146
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-31 Score=237.92 Aligned_cols=202 Identities=10% Similarity=0.009 Sum_probs=154.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~-- 122 (287)
.+.+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 10 ~~~~l~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~ 84 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHAL-----KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILT 84 (260)
T ss_pred CCceEEEEEEEEEeCCeEEe-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccc
Confidence 45678999999999877666 888 99999999999999999999999999999840 013799998887432
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
.+.++|++|++..+ . .|+.+|+.+....+ +.......+++.++++.++. ..+.++.+||+||
T Consensus 85 ~~~~~~~~~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 85 PKQDIALLRAKVGMVFQKPTPF-P--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred cccchHHHhcceEEEecCCccC-c--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 23589999996533 2 69999998765433 22222223456777777763 2466788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||.. +.+.++++.. ..|++||+++.+.. |++ |++++.|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999993 4444444432 24699999998765 544 78888888877
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 242 ~~~ 244 (260)
T PRK10744 242 IFT 244 (260)
T ss_pred HHh
Confidence 643
No 147
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1e-31 Score=241.49 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=151.6
Q ss_pred cccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 52 FGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++.|+.. .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~ 74 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRAL-----FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITST 74 (280)
T ss_pred EEEEEEEEEcCCCCcccccee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccc
Confidence 5678899999742 355 888 9999999999999999999999999999999 9999999887532
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~q 189 (287)
+..++|++|++. .++. .|+.+|+.+....++.......+++.++++.++.. .++++.+|||||+|
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 75 SKNKDIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMR 152 (280)
T ss_pred ccccCHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 134899999863 2333 59999998765444332222334566777777643 46778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|+++|++++.+|++|++|+|+..||. .+++.|.++.+ .+|++||+++.+.. +++ |++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999 34444444432 24689999998865 444 788888888876
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 54
No 148
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-31 Score=235.18 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=153.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCC---CCcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p---~~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|++ . | ++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~~l-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~ 74 (252)
T PRK14239 3 EPILQVSDLSVYYNKKKAL-----NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNI 74 (252)
T ss_pred CceEEEEeeEEEECCeeee-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEEC
Confidence 4678999999999877777 888 999999999999999999999999999984 4 6 589999887532
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|++..+ + .|+.+|+.+.....+.... ...+++.++++.++. ..+..+.+||+
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 151 (252)
T PRK14239 75 YSPRTDTVDLRKEIGMVFQQPNPF-P--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSG 151 (252)
T ss_pred cCcccchHhhhhcEEEEecCCccC-c--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCH
Confidence 23599999996533 3 6999999876544333221 123455666766652 24677889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+|+++++|+|+..||.. +++.+.++.. .+|++|||++++.. |++ |++++.|++
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999993 3444444432 34699999998766 544 888889988
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
.++..
T Consensus 232 ~~~~~ 236 (252)
T PRK14239 232 KQMFM 236 (252)
T ss_pred HHHHh
Confidence 88643
No 149
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=8.9e-32 Score=240.57 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=156.2
Q ss_pred CCccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+.. .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l-----~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~ 76 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTL-----KDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDD 76 (269)
T ss_pred CceEEEEEEEEEcCCCCCcce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcC
Confidence 5678999999999753 355 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++...+. ..++.+|+.+.....+.......+++.++++.++. ..+.++.+||+||+||+++|+
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 77 NFEKLRKHIGIVFQNPDNQFV-GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred CHHHHHhheeEEEeChHHhcc-cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 2348999999642222 25788888776544333222234456677877773 456778899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
|++.+|+++++|+++..||. .+++.++++.+ ..|++||+++++.. |++ |++++.|+++++..
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999 44555555532 24699999998865 444 78888888887654
No 150
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.97 E-value=5e-32 Score=261.96 Aligned_cols=197 Identities=16% Similarity=0.105 Sum_probs=155.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+++.++ +++ +++.+|+++||+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~i~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 2 QALLQLKGIDKAFPGVKAL-----SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred CceEEEeeeEEEeCCeEEe-----eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCH
Confidence 3679999999999887777 888 9999999999999999999999999999999 9999999887432
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhc---C-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+....+ + .......+++.++++.++. ..++++.+||||||||++
T Consensus 74 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ 151 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVE 151 (501)
T ss_pred HHHHhCCEEEEEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHH
Confidence 235899999864333 489999998753321 1 1111223456778888773 446788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
||+|++.+|++|++|||+..||. .+++.+.++.+ ..|++|||++++.. |++ |++++.|+++++
T Consensus 152 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 152 IAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 99999999999999999999999 34444455433 24699999999876 544 788888877665
No 151
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.97 E-value=1.4e-31 Score=237.54 Aligned_cols=196 Identities=17% Similarity=0.152 Sum_probs=152.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIV-----DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRAR 73 (256)
T ss_pred ceEEeEEEEECCEEEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHH
Confidence 4678899999887777 888 9999999999999999999999999999999 9999999988542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHH-h---cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhh
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~---~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++...+ .+|+.+|+.+... . +........+++.++++.++. ..+.++..||+||+||+++|++
T Consensus 74 ~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 74 ARRVALVEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred hhheEEecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 234899999864333 3799999877421 1 111222234467778887763 4567888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|+++..||.. +.+.+.++.+ ..|++|||++.+.. |++ |++++.|+.+++..
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999993 4444444432 24699999999866 544 78888898877643
No 152
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.2e-31 Score=233.04 Aligned_cols=196 Identities=13% Similarity=0.093 Sum_probs=153.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
+.++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 l~~~~l~~~~~~~~il-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (232)
T cd03300 1 IELENVSKFYGGFVAL-----DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKR 72 (232)
T ss_pred CEEEeEEEEeCCeeee-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhc
Confidence 3567889999877667 898 9999999999999999999999999999999 9999998887532 24
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..+. .+|+.+|+.+.....+.......+++.++++.++. ..+..+..||+||+||+++|++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 73 PVNTVFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred ceEEEecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999976443 37999998776544432222233456677777763 4567788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++|+++..+|. .+++.+.++.. .++++||+++++.. |++ |++++.|+..++..
T Consensus 151 llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 151 VLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999 44445555432 34689999999765 444 78888888776654
No 153
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.5e-31 Score=240.14 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=154.9
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
++++++++++.|+.. .++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l-----~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~ 74 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQL-----NGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAE 74 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcC
Confidence 478899999999742 355 888 9999999999999999999999999999999 9999999887543
Q ss_pred -----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 -----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|++. .++. .|+.+|+.+.....+.......+++.++++.++ ...+.++..|||||+||++||
T Consensus 75 ~~~~~~~~i~~v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 75 NVWNLRRKIGMVFQNPDNQFVG--ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred CHHHHhcceEEEEECHHHhhcc--CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 234899999963 2332 699999987644333322222345667777766 345677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
++++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. +++ |++++.|+++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999 34455554433 24699999999865 443 88888998888754
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.3e-31 Score=237.74 Aligned_cols=196 Identities=17% Similarity=0.186 Sum_probs=153.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+++.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~l~~~~l~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (255)
T PRK11231 2 TLRTENLTVGYGTKRIL-----NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQ 73 (255)
T ss_pred EEEEEeEEEEECCEEEE-----eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHH
Confidence 47789999999987777 888 9999999999999999999999999999999 9999999887542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHH----hcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~----~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|+..... .+|+.+|+.+... .++.......+++.++++.++. ..+.++.+|||||+||+++|+
T Consensus 74 ~~~~i~~~~q~~~~~~--~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 74 LARRLALLPQHHLTPE--GITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HhhheEEecccCCCCC--CccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 234899999965433 4789999876421 1121122234456777777763 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|++.+|+++++|+|+..+|.. +++.+.++.. ..|++||+++.+.+ +++ |+++..|+++++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999993 4444444432 24699999998876 444 7888888877764
No 155
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.6e-31 Score=233.61 Aligned_cols=198 Identities=14% Similarity=0.081 Sum_probs=152.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+..+ +++ +++++|++++|+|+||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 2 ~~~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 2 IAKTTNLNLFYGKKQAL-----FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVA 76 (246)
T ss_pred ceeeeeeEEEECCEeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHH
Confidence 46788999999877777 888 99999999999999999999999999999730016899999888543
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC--CCchHHHHHHHHHHhccC------CCCCCCCCCcccCCchhh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~~qrv~i 193 (287)
...++|++|++..+ . .|+++|+.+.....+.. .....+++.+.++.++.. .+..+..||+||+||+++
T Consensus 77 ~~~~i~~~~q~~~l~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 77 LRKNVGMVFQQPNVF-V--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred HhhhEEEEecCCccc-c--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence 23489999996543 3 59999998764433321 122334566777777642 356778999999999999
Q ss_pred hhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|++++.+|+++++|+++..+|.. +.+.+.++.. ..+++||+++.+.. +++ |++++.|+++++.
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999993 3444444322 24689999998865 444 8888888888764
No 156
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9e-32 Score=260.46 Aligned_cols=197 Identities=16% Similarity=0.113 Sum_probs=156.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p--~~G~i~~~~~~~--- 122 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ | ++|+|.++|...
T Consensus 3 ~~~l~~~nl~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~ 74 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKAL-----DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQAS 74 (506)
T ss_pred CceEEEeeeEEEeCCeEee-----cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCC
Confidence 4689999999999987777 998 9999999999999999999999999999998 7 799999887532
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhc--CC-CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCch
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--~~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv 191 (287)
+..++|++|++..++ .+|+.+|+.+....+ +. ......+++.++++.++. ..++++.+||||||||+
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv 152 (506)
T PRK13549 75 NIRDTERAGIAIIHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV 152 (506)
T ss_pred CHHHHHHCCeEEEEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence 234899999965333 489999998754322 11 111223467788888874 45678889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
++|++++.+|++|++|||+..||+ .+++.+.++.+ ..|++|||++.+.. |++ |+++..|+++++
T Consensus 153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999999999999999 44455555432 24699999999876 544 788888887765
No 157
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.97 E-value=2e-31 Score=231.82 Aligned_cols=189 Identities=20% Similarity=0.097 Sum_probs=150.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----Ccee
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA 126 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----~~~i 126 (287)
++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |++|+|.+++... ...+
T Consensus 1 l~l~~v~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~ 72 (223)
T TIGR03740 1 LETKNLSKRFGKQTAV-----NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKI 72 (223)
T ss_pred CEEEeEEEEECCEEEE-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccE
Confidence 3567889999877777 888 9999999999999999999999999999999 9999999887542 2358
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|++..++ .+|+.+|+.+....++. ...++.++++.++. ..+..+.+||+||+||+++|++++.+|+++
T Consensus 73 ~~~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 73 GSLIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred EEEcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999865433 37999999776543332 23466777777763 346678899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
++|+|+..+|. .+++.+.++.+ ..|++|||++++.. |++ |++++.|++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999 34455555433 24689999998865 544 78888787654
No 158
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=3.8e-31 Score=234.56 Aligned_cols=195 Identities=13% Similarity=0.122 Sum_probs=152.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p----~~G~i~~~~~~~--- 122 (287)
.++++++++.| .+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~ 74 (254)
T PRK10418 4 QIELRNIALQA-AQPLV-----HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPC 74 (254)
T ss_pred EEEEeCeEEEe-cccee-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeecccc
Confidence 57889999999 45556 888 9999999999999999999999999999998 8 999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcccCCchhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~~qrv~ia 194 (287)
.+.++|++|++...+.+.+++.+++.+.....+.. ...+++.+.++.++.. .+..+.+||+||+||++||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 24599999997433333467777776543333322 2335677888888743 3677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|++|++|+++..||. .+++.++++.+ .++++||+++.+.. |++ |++++.|+++++.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999998 34555555533 24699999999865 443 7888888887764
No 159
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=233.81 Aligned_cols=201 Identities=10% Similarity=0.078 Sum_probs=152.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~---- 122 (287)
-.++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 3 ~~l~~~nl~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAV-----KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred cEEEEEEEEEEeCCeeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 357889999999877777 888 99999999999999999999999999999740 002689998887432
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhcc------CCCCCCCCCCcccCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~q 189 (287)
...++|++|+...++ .+|+.+|+.+.....+.. .....+++.+.++.++. ..+..+.+||+||+|
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ 155 (252)
T ss_pred CChHHhhccEEEEecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence 234899999966443 379999998654433322 12223456677777663 234677899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|+++..+|. .+++.++++.+ .+|++||+++++.. |++ |++++.|+++++.
T Consensus 156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999998 33444444433 34799999999876 544 7888889888764
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 236 ~ 236 (252)
T PRK14256 236 T 236 (252)
T ss_pred h
Confidence 3
No 160
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=239.00 Aligned_cols=198 Identities=12% Similarity=0.139 Sum_probs=155.2
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.++.++++++.|+++.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 6 ~~l~i~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 77 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVA-----ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK 77 (265)
T ss_pred cEEEEEEEEEEECCEEEe-----eecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence 467889999999987777 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CC---CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~---~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|++..++ .+++.+|+.+..... +. ......+++.++++.++ ...++++..||+||+||+++|
T Consensus 78 ~~~~~i~~v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 78 EVARRIGLLAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHhhheEEeeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence 234899999975444 378989887642111 10 11122345677777776 345778889999999999999
Q ss_pred hhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|+++++|+|+..||.. +++.+.++.+ ..|++|||++++.. |++ |++++.|+++++..
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999983 5555555532 24699999998876 444 78888898887654
No 161
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.97 E-value=2.4e-31 Score=246.44 Aligned_cols=188 Identities=12% Similarity=0.089 Sum_probs=148.1
Q ss_pred cccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------
Q 023126 56 RSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------ 122 (287)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------ 122 (287)
++++.|+... + ++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 4 ~l~~~~~~~~-~------~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~ 73 (354)
T TIGR02142 4 RFSKRLGDFS-L------DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPE 73 (354)
T ss_pred EEEEEECCEE-E------EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchh
Confidence 5778887642 2 45 9999999999999999999999999999999 9999998877432
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
++.++|++|++..++ .+|+.+|+.+..... ......+++.++++.++. ..++++.+||||||||+++|+|++.+
T Consensus 74 ~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~ 149 (354)
T TIGR02142 74 KRRIGYVFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS 149 (354)
T ss_pred hCCeEEEecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 245899999965443 489999998765432 112234457788888774 45778889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|+++++|||+..||. .+++.++++.. ..|++|||++++.. +++ |++++.|+++++..
T Consensus 150 p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 150 PRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999999998 44555555543 24699999999876 444 78888898888653
No 162
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-31 Score=229.51 Aligned_cols=177 Identities=13% Similarity=0.080 Sum_probs=137.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+. .++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 1 i~~~~l~~~~~~~~-------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGEQP-------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADR 70 (211)
T ss_pred CEEEeEEEEeCCEe-------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHc
Confidence 35678888887542 155 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+.............+++.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 71 ~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ 148 (211)
T cd03298 71 PVSMLFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP 148 (211)
T ss_pred cEEEEecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 5899999976443 37999998764321111112234567778888773 3467788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++++|||+..+|. .+++.++++.. ..|++|||++++..
T Consensus 149 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~ 194 (211)
T cd03298 149 VLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKR 194 (211)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 9999999999999 34455555432 24699999998865
No 163
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=239.17 Aligned_cols=202 Identities=12% Similarity=0.042 Sum_probs=151.3
Q ss_pred CCCCccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
..+..++++++++.|+ .+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~ 73 (272)
T PRK15056 2 MQQAGIVVNDVTVTWRNGHTAL-----RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQ 73 (272)
T ss_pred chhceEEEEeEEEEecCCcEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHH
Confidence 3456789999999995 46666 888 9999999999999999999999999999999 9999999888542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~i 193 (287)
...++|++|++........++.+++.+.... ...+.....+++.++++.++. ..+.++.+|||||+||+++
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 74 ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFL 153 (272)
T ss_pred hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHH
Confidence 2358999998643222123566666532110 111112234456677777763 4577888999999999999
Q ss_pred hhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh---hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~ 256 (287)
|++++.+|+++++|+|+..||.. +.+.+.++.+ .+|++|||++.+.. +++ |+++..|+++++.
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~~G~i~~~g~~~~~~ 229 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTF 229 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHhcc
Confidence 99999999999999999999993 4444444432 24699999998876 443 7888888887753
No 164
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-31 Score=237.69 Aligned_cols=201 Identities=10% Similarity=0.044 Sum_probs=156.1
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
.+.++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il-----~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQAL-----DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred CCCceEEEEEEEEEECCEeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 567789999999999887777 898 999999999999999999999999999998510 04899998877432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++.. +. .++.+|+.+.....+.+. ...+++.++++.++. ..+.++.+|||||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred ccccchHhhhccEEEEecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 2358999999653 33 389999987654443322 234456777777763 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH-h----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV-L----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv-~----gr~v~~G~~~ 253 (287)
+||++||++++.+|++|++|+++..||. .+++.|+++.+ ..|++|||++++.. |+ + |++++.|++.
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 9999999999999999999999999998 34445555433 34699999999876 53 1 7888888877
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 266 ~~~ 268 (285)
T PRK14254 266 KIF 268 (285)
T ss_pred HHH
Confidence 764
No 165
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-31 Score=236.04 Aligned_cols=201 Identities=14% Similarity=0.084 Sum_probs=155.0
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~-- 122 (287)
..++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 17 ~~~~l~~~nl~~~~~~~~il-----~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 91 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAI-----KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91 (267)
T ss_pred CCeEEEEeeEEEEECCeeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccc
Confidence 45689999999999887777 888 999999999999999999999999999998500 03799998887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+++.+.++.++. ..+.++.+||+||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 92 KEINVYEMRKHIGMVFQRPNPF-A--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQ 168 (267)
T ss_pred ccCChHHHhcceEEEecCCccc-c--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHH
Confidence 23489999986543 2 599999987654333211 1223445666776653 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+.+.+.++.. ..|++||+++++.. |++ |++++.|++.+
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34455555432 24699999998765 444 88889998887
Q ss_pred HH
Q 023126 255 VA 256 (287)
Q Consensus 255 v~ 256 (287)
+.
T Consensus 249 ~~ 250 (267)
T PRK14237 249 IF 250 (267)
T ss_pred Hh
Confidence 64
No 166
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=3.7e-31 Score=232.10 Aligned_cols=194 Identities=16% Similarity=0.162 Sum_probs=151.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.. ++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+. ..
T Consensus 1 l~~~~l~~~~~~~-~l-----~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~ 71 (235)
T cd03299 1 LKVENLSKDWKEF-KL-----KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKR 71 (235)
T ss_pred CeeEeEEEEeCCc-ee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHc
Confidence 3567888888754 45 888 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+.....+.......+.+.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 72 ~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 149 (235)
T cd03299 72 DISYVPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK 149 (235)
T ss_pred CEEEEeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence 5899999965443 37999999876544333222233456677877773 3567788999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++|+++..+|. .+++.++++.. ..+++||+++++.. +++ |++++.|+++++.
T Consensus 150 llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 150 ILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999998 45555555432 24689999999775 444 7888888876654
No 167
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5e-31 Score=233.23 Aligned_cols=197 Identities=13% Similarity=0.046 Sum_probs=153.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH---hcccCC--CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~---l~~~~p--~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+ ++ | ++|+|.++|...
T Consensus 2 ~~l~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~ 73 (250)
T PRK14245 2 VKIDARDVNFWYGDFHAL-----KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIY 73 (250)
T ss_pred cEEEEEEEEEEECCEeEE-----eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEecc
Confidence 678899999999887777 888 99999999999999999999999999997 34 4 489998887542
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+.+.++++.++. ..+.++.+||||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14245 74 DKGVQVDELRKNVGMVFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG 150 (250)
T ss_pred cccccHHHHhhheEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence 12489999996543 2 489999987654433221 1223456677777763 235677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|||+..||.. +++.++++.. .+|++|||++.+.. |++ |++++.|+++
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999993 4444444432 34699999999866 554 8888999888
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14245 231 KIFT 234 (250)
T ss_pred HHhc
Confidence 8754
No 168
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=234.84 Aligned_cols=203 Identities=12% Similarity=0.106 Sum_probs=153.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
...++++++++++.|+++.++ +++ +.+++|+++||+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 17 ~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 91 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKRAV-----NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNIL 91 (268)
T ss_pred CCCceEEEEEEEEEeCCceee-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcc
Confidence 566789999999999887777 888 999999999999999999999999999985200 15899998877432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+.+.+.++.++. ..+.++.+||||
T Consensus 92 ~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 168 (268)
T PRK14248 92 DSNINVVNLRREIGMVFQKPNPF-P--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG 168 (268)
T ss_pred cccccHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence 23589999996533 3 489999987643332211 1122345566666553 235678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|+++
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999998 34445555432 34699999998766 554 7888888887
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 249 ~~~~ 252 (268)
T PRK14248 249 QIFT 252 (268)
T ss_pred HHHh
Confidence 7643
No 169
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-31 Score=233.47 Aligned_cols=191 Identities=15% Similarity=0.101 Sum_probs=150.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.++++++++.|+.+.++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 3 EIEFKEVSYSSFGKEIL-----KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID 74 (241)
T ss_pred eEEEEeEEEEeCCeeee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence 36788999999877777 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
+..++|++|++..+ . .++.+|+.+.....+ ....++.++++.++.. .++++.+|||||+||+++|++++
T Consensus 75 ~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~ 147 (241)
T PRK14250 75 LRRKIGMVFQQPHLF-E--GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLA 147 (241)
T ss_pred hhhcEEEEecCchhc-h--hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHh
Confidence 24589999996543 2 589898876433221 2234567777777642 46778899999999999999999
Q ss_pred cCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+|+++++|+++..||.. +.+.++++.+ ..|++|||++.+.. |++ |++++.|++.++.
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999999983 4444444432 24699999999765 444 7888888888764
No 170
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=259.04 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=156.4
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+++.++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 3 ~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 3 TPYISMAGIGKSFGPVHAL-----KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDH 74 (510)
T ss_pred CceEEEeeeEEEcCCeEEe-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCH
Confidence 4689999999999987777 898 9999999999999999999999999999999 9999999887542
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCC---CCchHHHHHHHHHHhcc--CCCCCCCCCCcccCC
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAP---WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~---~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~q 189 (287)
...++|++|++..++ .+|+.+|+.+.... ++.. .....+++.++++.++. ..++++.+|||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~q 152 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQ 152 (510)
T ss_pred HHHHHCCeEEEeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHH
Confidence 134899999865433 47999998764321 1211 11223567778888873 456788899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|++||++++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |+++..|.++++
T Consensus 153 rv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 99999999999999999999999999 34444555433 24699999999876 554 788888887765
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 233 ~ 233 (510)
T PRK09700 233 S 233 (510)
T ss_pred C
Confidence 3
No 171
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=3.9e-31 Score=257.29 Aligned_cols=200 Identities=17% Similarity=0.172 Sum_probs=156.0
Q ss_pred CCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccC
Q 023126 49 QPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDS 118 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~ 118 (287)
.++++++++++.|+. +.++ +++ +.+++||++||+||||||||||+++|+|+++ | ++|+|.++
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l-----~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~ 74 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVV-----NDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFH 74 (529)
T ss_pred CceEEEeceEEEecCCCCceeee-----eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEEC
Confidence 468999999999963 3566 888 9999999999999999999999999999998 7 79999888
Q ss_pred CCCC------------CceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCCCCchHHHHHHHHHHhccC-----CCCCC
Q 023126 119 QVKP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSVYA 180 (287)
Q Consensus 119 ~~~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~~~ 180 (287)
|... ...++|++|++.....+.+++.+++.+.... .+.+.....+++.++++.++.. .++++
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 7532 1358999999643223346888887754322 2333333456778888888753 36788
Q ss_pred CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hc
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KR 245 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr 245 (287)
.+|||||+||++||+|++.+|++|++|||+..||. .+++.++++.. .+|++|||++.+.. |++ |+
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~ 234 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCE
Confidence 89999999999999999999999999999999999 44455555432 24699999999876 554 78
Q ss_pred cccCCChHHHH
Q 023126 246 HISTGKPPDVA 256 (287)
Q Consensus 246 ~v~~G~~~ev~ 256 (287)
+++.|+++++.
T Consensus 235 i~~~g~~~~~~ 245 (529)
T PRK15134 235 CVEQNRAATLF 245 (529)
T ss_pred EEEeCCHHHHh
Confidence 88888887764
No 172
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.3e-31 Score=235.58 Aligned_cols=202 Identities=12% Similarity=0.084 Sum_probs=154.4
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
+..++++++++++.|+.+.++ +++ +.|++|++++|+|+||||||||+++|+|+++.. +|++|+|.++|.+.
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAV-----KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred CCCceEEEEeEEEEECCEEEE-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 456789999999999987777 888 999999999999999999999999999998610 13899999887532
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
...++|++|++.. +. .|+.+|+.+.....+.. ....+++.++++.++. ..+.++.+||+||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNP-FP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred cccCCHHHHhhceEEEccCCcc-ch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 1358999999653 33 49999998765433322 1223445566666652 2467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh---------------
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL--------------- 243 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~--------------- 243 (287)
+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++++.. |++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999998 34445544432 34699999998876 332
Q ss_pred hccccCCChHHHHH
Q 023126 244 KRHISTGKPPDVAK 257 (287)
Q Consensus 244 gr~v~~G~~~ev~~ 257 (287)
|++++.|++.++..
T Consensus 240 g~~~~~~~~~~~~~ 253 (269)
T PRK14259 240 GYLVEFNETKKIFN 253 (269)
T ss_pred ceEEEeCCHHHHHh
Confidence 34678888888765
No 173
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=232.64 Aligned_cols=197 Identities=10% Similarity=0.080 Sum_probs=150.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~-- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|...
T Consensus 4 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAV-----KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEECCEEee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEccc
Confidence 67889999999877777 888 9999999999999999999999999999997 74 79998887432
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhc------cCCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLR------NQGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~------~~~~~~~~~lSgG~ 187 (287)
...++|++|++..++ .+|+.+|+.+.....+.... ...+.+.+.++.++ ...+.++..|||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred CccCHHHhhceeEEEeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 235899999965443 37999999865443322111 12233444444443 23467788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..+|. .+.+.++++.. ..|++||+++.+.. |++ |++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444444432 24699999999876 444 88888898888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 234 ~~~ 236 (252)
T PRK14272 234 LFT 236 (252)
T ss_pred HHh
Confidence 643
No 174
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.97 E-value=3.6e-31 Score=232.46 Aligned_cols=196 Identities=17% Similarity=0.174 Sum_probs=154.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 1 i~i~~l~~~~~~~~il-----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFGSFQAL-----DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDR 72 (237)
T ss_pred CEEEEEEEEECCeeee-----eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhc
Confidence 3578889999877777 888 9999999999999999999999999999999 9999998877542 24
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|++..++ .+|+.+|+.+....++.......+.+.++++.++. ..+..+..||+||+||++++++++.+|+
T Consensus 73 ~i~~~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 73 KIGFVFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred CEEEEecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 5899999875443 37999999876544332222234556777877763 3467778999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++++|+++..+|. .+++.+.++.. ..+++||+++++.. +++ |++++.|+.+++..
T Consensus 151 llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999998 34455554432 34689999998766 544 78888888777643
No 175
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=5.4e-31 Score=226.21 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=142.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~ 72 (204)
T PRK13538 1 MLEARNLACERDERILF-----SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEY 72 (204)
T ss_pred CeEEEEEEEEECCEEEE-----ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHh
Confidence 36788999999887777 888 9999999999999999999999999999999 9999999887542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|++...+ .+|+.+|+.+....++. ...+++.++++.++. ..+.++..||+||+||+++|++++.+
T Consensus 73 ~~~~~~~~~~~~~~~--~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 73 HQDLLYLGHQPGIKT--ELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred hhheEEeCCccccCc--CCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 234889998865333 47999999876544321 334567778888773 35678889999999999999999999
Q ss_pred ccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 201 HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 201 a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+++++||++..||.. +++.+.++.+ ..|++|||++++.+
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS 194 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence 9999999999999983 4444444432 34699999998755
No 176
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=2.9e-31 Score=257.11 Aligned_cols=196 Identities=18% Similarity=0.122 Sum_probs=157.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.+.++++++++++.|+++.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~ 78 (510)
T PRK15439 7 TAPPLLCARSISKQYSGVEVL-----KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARL 78 (510)
T ss_pred CCCceEEEEeEEEEeCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCC
Confidence 345689999999999987777 888 9999999999999999999999999999999 99999998875321
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
..++|++|++..++ .+|+.+|+.+.... .....+++.++++.++. ..++++.+||||||||++||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 152 (510)
T PRK15439 79 TPAKAHQLGIYLVPQEPLLFP--NLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEIL 152 (510)
T ss_pred CHHHHHhCCEEEEeccCccCC--CCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHH
Confidence 24899999965433 48999998764321 12234567788888874 45678889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++++.+|++|++|||+..||. .+++.|+++.+ .+|++|||++.+.. +++ |++++.|+++++.
T Consensus 153 ~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 153 RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 999999999999999999998 34455555433 24699999999876 444 7888888887754
No 177
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=221.91 Aligned_cols=200 Identities=15% Similarity=0.166 Sum_probs=164.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+...++ +++ +.+++|.+.+|+||||||||||+.+++.+++ +++|+|.++|.+..
T Consensus 1 MI~i~nv~K~y~~~~vl-----~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~ 72 (252)
T COG4604 1 MITIENVSKSYGTKVVL-----DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKE 72 (252)
T ss_pred CeeehhhhHhhCCEEee-----ccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHH
Confidence 46789999999999999 999 9999999999999999999999999999999 99999999886532
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhc--CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++++-|..... ..+||++.+.|++.-| |.+..+++..+.++++.+. +..+++..+|||||+||+.+|+.+
T Consensus 73 LAk~lSILkQ~N~i~--~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVl 150 (252)
T COG4604 73 LAKKLSILKQENHIN--SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVL 150 (252)
T ss_pred HHHHHHHHHhhchhh--heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheee
Confidence 3467777775533 3489999999876433 5566778888899998877 566889999999999999998888
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRI 260 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~~ 260 (287)
+.+.+.+++|||+--||= .+++.++++.+ .+++|-||.+++.. .++ |+++.+|+++|+++...
T Consensus 151 aQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~ 228 (252)
T COG4604 151 AQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228 (252)
T ss_pred eccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHH
Confidence 888888888888888876 44455554443 35689999999887 444 89999999999886543
No 178
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.2e-31 Score=250.88 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=161.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...+++++++++|+|+...++ +++ +.+.+||++||+|+||||||||+|+|+|.++ |++|+|+++|....
T Consensus 4 ~~~~ll~~~~i~K~FggV~AL-----~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~ 75 (500)
T COG1129 4 STPPLLELRGISKSFGGVKAL-----DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFS 75 (500)
T ss_pred CccceeeeecceEEcCCceee-----ccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCC
Confidence 456789999999999999999 999 9999999999999999999999999999999 99999999986532
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhc---CC-CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
.-|..++|+....++ +||.||+.++.... +. .+....+++.++|+.++. ..+.++.+||.||||.
T Consensus 76 sp~~A~~~GI~~V~QEl~L~p~--LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~ 153 (500)
T COG1129 76 SPRDALAAGIATVHQELSLVPN--LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQM 153 (500)
T ss_pred CHHHHHhCCcEEEeechhccCC--ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHH
Confidence 238999999765554 99999998765432 22 223345567788888873 3677888999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hccccCCC
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|+||+|+..+++++|+|||+.-|++ .+++.++++...+ |||||.++++.+ |+. |+.+..++
T Consensus 154 VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 154 VEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999998 5667777776654 699999999998 544 77665444
No 179
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.97 E-value=7.5e-31 Score=226.75 Aligned_cols=186 Identities=14% Similarity=0.080 Sum_probs=141.6
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cce
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV 125 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~~ 125 (287)
+++++++.|+. .. .++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+. ...
T Consensus 2 ~~~~l~~~~~~--~~-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 71 (213)
T TIGR01277 2 ALDKVRYEYEH--LP-----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP 71 (213)
T ss_pred eEEeeeEEeCC--cc-----eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence 56788888863 22 466 9999999999999999999999999999999 9999999887542 245
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
++|++|++..++ .+|+.+|+.+.............+++.++++.++. ..+..+.+||+||+||+++|++++.+|++
T Consensus 72 i~~v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 72 VSMLFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred eEEEeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 899999975443 37999999765332111111234456777887763 34677889999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
+++|+++..+|.. +++.+.++.+ ..|++||+++++.. +++ |++++.|
T Consensus 150 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 150 LLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999999999993 4445555432 24699999998765 443 5555554
No 180
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.8e-31 Score=232.70 Aligned_cols=201 Identities=15% Similarity=0.151 Sum_probs=156.3
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC------
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------ 119 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~------ 119 (287)
..+|+++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 6 SAEDVFNISRLYLYINDKAIL-----KDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFG 77 (257)
T ss_pred hhhhheeeeeEEEecCCceeE-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECC
Confidence 367899999999999998887 898 9999999999999999999999999999999 9998766554
Q ss_pred CCC--------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhccC------CCCCCCCCC
Q 023126 120 VKP--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFD 184 (287)
Q Consensus 120 ~~~--------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS 184 (287)
.+. ...++|++|++..++ .+|+.+|+.+.....+.. .....+++.++++.++.. .+..+..||
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS 155 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLS 155 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCC
Confidence 221 245899999976443 379999998764432221 112234567777777642 356778999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
+||+||+++|++++.+|+++++|+|+..||.. +++.+.++.. ..|++||+++.+.. +++ |++++.|+
T Consensus 156 ~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~ 235 (257)
T PRK14246 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999984 4444444432 34799999998865 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 236 ~~~~~~ 241 (257)
T PRK14246 236 SNEIFT 241 (257)
T ss_pred HHHHHh
Confidence 887653
No 181
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=6.8e-31 Score=236.85 Aligned_cols=202 Identities=9% Similarity=0.052 Sum_probs=154.4
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc-c-cCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN-K-IWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~-~-~~p~~G~i~~~~~~~-- 122 (287)
+.++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ . .+|++|+|.++|...
T Consensus 36 ~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~ 110 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAV-----KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110 (286)
T ss_pred CceEEEEeeeEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhh
Confidence 56789999999999877666 888 9999999999999999999999999999852 0 013899998887431
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
+..++|++|++..+ . .|+.+|+.+.....+... ....+++.++++.++. ..+.++..|||||
T Consensus 111 ~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 111 KFTDEVLLRKKIGMVFQKPNPF-P--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred cccchHHhhhcEEEECCCCCCC-c--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 23589999997543 3 499999987654433321 1123445566666552 3466788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+++.++++.. .+|++|||++++.. |++ |++++.|++.+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444544433 35799999999876 444 78888898887
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 268 ~~~ 270 (286)
T PRK14275 268 LFT 270 (286)
T ss_pred HHh
Confidence 643
No 182
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.97 E-value=7.2e-31 Score=230.96 Aligned_cols=194 Identities=17% Similarity=0.032 Sum_probs=147.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|++ + |++|+|.++|...
T Consensus 1 l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVEDKEIL-----KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEECCEEEE-----eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHH
Confidence 3578899999877777 888 999999999999999999999999999994 7 9999999988542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-C------CCCchHHHHHHHHHHhccC---CCCCCC-CCCcccC
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG 188 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~------~~~~~~~~~~~~l~~l~~~---~~~~~~-~lSgG~~ 188 (287)
...++|++|++..++ .+|+.+|+.+...... . ......+++.+.++.++.. .++.+. .||+||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIP--GVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred HhhccceEeeeccccccC--CcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence 123789999975443 4799999877543221 1 1111234567777777743 355665 5999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ 253 (287)
||+++|++++.+|+++++|||+..||. .+++.+.++.+ .+|++|||++.+.. +++ |++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 999999999999999999999999998 44455555532 24699999998754 333 7777888776
Q ss_pred HH
Q 023126 254 DV 255 (287)
Q Consensus 254 ev 255 (287)
++
T Consensus 231 ~~ 232 (243)
T TIGR01978 231 LA 232 (243)
T ss_pred Hh
Confidence 54
No 183
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8e-31 Score=231.84 Aligned_cols=197 Identities=12% Similarity=0.115 Sum_probs=152.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 2 ~~l~~~~l~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~ 73 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAV-----KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY 73 (250)
T ss_pred ceEEEEeeEEEeCCceeE-----eeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence 368899999999877767 888 9999999999999999999999999999987 5 899999887432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+... ....+.+.+.++.++. ..+.++.+||+|
T Consensus 74 ~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 150 (250)
T PRK14262 74 DPQLDVTEYRKKVGMVFQKPTPF-P--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGG 150 (250)
T ss_pred cchhhHHHhhhhEEEEecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHH
Confidence 23599999986533 2 699999987654333221 1223345666666653 245678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..+++||+++.+.. |++ |+++..|+++
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTR 230 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999998 34444544432 34699999998765 444 8888889888
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 231 ~~~~ 234 (250)
T PRK14262 231 EIVE 234 (250)
T ss_pred HHHh
Confidence 7653
No 184
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.6e-31 Score=231.79 Aligned_cols=203 Identities=13% Similarity=0.064 Sum_probs=154.9
Q ss_pred cCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCcccccCCCC
Q 023126 46 ANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVK 121 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p---~~G~i~~~~~~ 121 (287)
|.+.++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++. .| ++|+|.++|..
T Consensus 1 ~~~~~~i~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~ 74 (253)
T PRK14261 1 MTMEIILSTKNLNLWYGEKHAL-----YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGEN 74 (253)
T ss_pred CCccceEEEeeeEEEECCeeee-----eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEE
Confidence 4567899999999999887777 888 99999999999999999999999999998750 02 48999888743
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
. ...++|++|++..+ + .|+++|+.+....++... ....+.+.++++.++. ..+..+..||
T Consensus 75 ~~~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 151 (253)
T PRK14261 75 IMDSGADVVALRRKIGMVFQRPNPF-P--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLS 151 (253)
T ss_pred ccccccchhhhhceEEEEecCCccC-c--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCC
Confidence 2 23489999996543 3 499999987655443211 1123345566665542 2457788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
+||+||+++|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++||+++.+.. +++ |++++.|+
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 152 GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999983 3344444432 34699999999875 444 78888888
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 232 ~~~~~~ 237 (253)
T PRK14261 232 TTQIFE 237 (253)
T ss_pred HHHHHh
Confidence 887643
No 185
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=8.2e-31 Score=254.57 Aligned_cols=199 Identities=14% Similarity=0.077 Sum_probs=154.9
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccC----------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS---------- 118 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~---------- 118 (287)
++++++++.|+.+.++ +++ +++.+|+++||+||||||||||+++|+|++ + |++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVL-----KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEECCeEee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEecccccccccc
Confidence 4578899999877777 888 999999999999999999999999999996 7 999998775
Q ss_pred -------------CCC------------------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHH
Q 023126 119 -------------QVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN 167 (287)
Q Consensus 119 -------------~~~------------------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.. .+..++|++|++..++. .+|+.+|+.+.....+.+.....+++.+
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~ 151 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVD 151 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 110 12348999997433332 3799999988655444433333456778
Q ss_pred HHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHH
Q 023126 168 CLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDT 237 (287)
Q Consensus 168 ~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~ 237 (287)
+++.++. ..++++.+||||||||++||+|++.+|++|++|||+..||.. +++.++++.. .+|++|||++.
T Consensus 152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8888874 346788899999999999999999999999999999999993 4444555532 24699999999
Q ss_pred HHH---HHh----hccccCCChHHHHHHH
Q 023126 238 AMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 238 ~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
+.. |++ |+++..|+++++...+
T Consensus 232 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred HHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 876 544 7888888888876543
No 186
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.9e-31 Score=231.89 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=150.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~-- 122 (287)
.++++++++.|+++.++ +++ +++++||+++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFYGDFQAL-----KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMND---LIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEECCceee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---ccCCCCCceEEEECCEEccc
Confidence 46788999999876666 888 9999999999999999999999999999875 3 689999887542
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCccc
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~ 187 (287)
+..++|++|++.. +. +|+.+|+.+....++... ....+++.+.++.++. ..+.++.+||+||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~-~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNP-FP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQ 151 (250)
T ss_pred cccchHHHhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHH
Confidence 2348999998643 32 699999987654443221 1223455666666652 2366788999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
+||+++|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++.+.. |++ |++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999998 34444444432 34699999998766 444 78888888777
Q ss_pred HH
Q 023126 255 VA 256 (287)
Q Consensus 255 v~ 256 (287)
+.
T Consensus 232 ~~ 233 (250)
T PRK14240 232 LF 233 (250)
T ss_pred HH
Confidence 64
No 187
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=6.2e-31 Score=235.03 Aligned_cols=199 Identities=17% Similarity=0.084 Sum_probs=154.6
Q ss_pred CccccCccccccc---------ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 50 PVFGKTRSLVQNK---------TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 50 ~~~~~~~~~~~~~---------~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
++++++++++.|+ .+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g 73 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVL-----NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRG 73 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeE-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC
Confidence 4688999999997 35566 888 9999999999999999999999999999999 9999999887
Q ss_pred CCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 120 VKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 120 ~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
... ...++|++|++...+.+..++.+++.+....+ +........++.++++.++. ..+..+..||
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 153 (268)
T PRK10419 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLS 153 (268)
T ss_pred EeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCC
Confidence 542 23599999996432333478888876543322 22222233467788888774 2467888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
+||+||+++|++++.+|+++++|+++..||.. +.+.++++.+ ..|++||+++.+.. +++ |++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 99999999999999999999999999999983 4455555432 24699999999875 444 788888
Q ss_pred CChHHHH
Q 023126 250 GKPPDVA 256 (287)
Q Consensus 250 G~~~ev~ 256 (287)
|++.++.
T Consensus 234 g~~~~~~ 240 (268)
T PRK10419 234 QPVGDKL 240 (268)
T ss_pred CChhhcc
Confidence 8887754
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=230.62 Aligned_cols=197 Identities=11% Similarity=0.076 Sum_probs=152.1
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |+ +|+|.++|...
T Consensus 2 ~~~l~~~~l~~~~~~~~il-----~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~ 73 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVL-----KNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENI 73 (251)
T ss_pred CceEEEEEEEEEECCeeEe-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEc
Confidence 4678899999999877667 888 9999999999999999999999999999998 87 69998877432
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|++..+ + .|+.+|+.+.....+.... ...+.+.+.++.++. ..+.++.+||+
T Consensus 74 ~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 150 (251)
T PRK14249 74 YSPNLDVVNLRKRVGMVFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSG 150 (251)
T ss_pred cccccChHHhhceEEEEecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCH
Confidence 24599999997543 2 4899999876543332211 122345555555542 34677889999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||+++|++++.+|+++++|+|+..||. .+++.+.++.. .+|++||+++.+.. +++ |++++.|++
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRT 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCH
Confidence 999999999999999999999999999998 34444444432 34699999999876 444 788888887
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 231 ~~~~ 234 (251)
T PRK14249 231 GEIF 234 (251)
T ss_pred HHHH
Confidence 7764
No 189
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=5.4e-31 Score=223.66 Aligned_cols=160 Identities=17% Similarity=0.112 Sum_probs=125.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----------CceeEEEeCCCC-CCCccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----------PDVATVLPMDGF-HLYLSQ 140 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----------~~~i~~v~qd~~-~~~~~~ 140 (287)
+++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. ...++|++|++. ..+.
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 83 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA-- 83 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc--
Confidence 888 9999999999999999999999999999999 9999998887432 234899999963 2332
Q ss_pred CCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh---
Q 023126 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--- 215 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--- 215 (287)
.|+.+|+.+....++.......+++.++++.++ ...+.++.+||+||+||+++|++++.+|+++++|||+..||.
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 699999987644333222222345677777776 345678889999999999999999999999999999999999
Q ss_pred -hhHHHHHHhhc---CceEEEeCHHH
Q 023126 216 -GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
.+++.+.++.. ..+++|||+++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecccc
Confidence 34444444432 24699999875
No 190
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=9e-31 Score=254.76 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=156.2
Q ss_pred CCCccccCccccccc-----------ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 48 AQPVFGKTRSLVQNK-----------TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~-----------~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
..++++++++++.|+ .+.++ +++ +.+++|+++||+||||||||||+|+|+|++ |++|+|
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i 342 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVV-----KNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEI 342 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEE
Confidence 456899999999995 23455 888 999999999999999999999999999987 679999
Q ss_pred ccCCCCC-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC--CCCCchHHHHHHHHHHhccC---CCCC
Q 023126 116 FDSQVKP-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVY 179 (287)
Q Consensus 116 ~~~~~~~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~ 179 (287)
.++|.+. +..++|++|++.....+.+|+.+|+.+....++ .+.....+++.++++.++.. .+++
T Consensus 343 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 422 (529)
T PRK15134 343 WFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY 422 (529)
T ss_pred EECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 9887432 234899999963212234799999987643332 22222345677888888742 4678
Q ss_pred CCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----h
Q 023126 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 244 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----g 244 (287)
+.+||||||||++||++++.+|++|++|||+..||. .+++.++++.+ .+|++|||++.+.. |++ |
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 889999999999999999999999999999999999 34555555432 24699999999876 554 8
Q ss_pred ccccCCChHHHH
Q 023126 245 RHISTGKPPDVA 256 (287)
Q Consensus 245 r~v~~G~~~ev~ 256 (287)
++++.|+++++.
T Consensus 503 ~i~~~~~~~~~~ 514 (529)
T PRK15134 503 EVVEQGDCERVF 514 (529)
T ss_pred EEEEEcCHHHHh
Confidence 888889888774
No 191
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=233.24 Aligned_cols=205 Identities=11% Similarity=0.069 Sum_probs=154.4
Q ss_pred hccCCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc--ccCCCCcccccCCC
Q 023126 44 RNANAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQV 120 (287)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~--~~~p~~G~i~~~~~ 120 (287)
.+.++.++++++++++.|+.+.++ +++ +++++|+++||+|+||||||||+++|+|+++ ..+|++|+|.++|.
T Consensus 17 ~~~~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 17 ETAPKKVVFDTQNLNLWYGEDHAL-----KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred ccCCCceEEEEeeeEEEECCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 345678899999999999877766 888 9999999999999999999999999999985 11148999988874
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch-HHHHHHHHHHhc------cCCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLR------NQGSVYAPSF 183 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~-~~~~~~~l~~l~------~~~~~~~~~l 183 (287)
+. ...++|++|++..+ . .|+.+|+.+.....+...... .+.+.+.++.++ ...+.++.+|
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~L 168 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPF-P--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGL 168 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCccc-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccC
Confidence 32 23589999996543 2 499999987654333221111 223445554432 2346678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||||+||+++|++++.+|+++++|+++..||.. +.+.+.++.. ..|++|||++++.. |++ |++++.|
T Consensus 169 SgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 169 SGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999993 3344444432 24699999999776 444 7888888
Q ss_pred ChHHHH
Q 023126 251 KPPDVA 256 (287)
Q Consensus 251 ~~~ev~ 256 (287)
++.++.
T Consensus 249 ~~~~~~ 254 (271)
T PRK14238 249 DTDKIF 254 (271)
T ss_pred CHHHHH
Confidence 887764
No 192
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=9e-31 Score=231.81 Aligned_cols=189 Identities=17% Similarity=0.156 Sum_probs=145.7
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 128 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~ 128 (287)
++++++++++.|+++.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++. ..++|
T Consensus 3 ~~l~~~~l~~~~~~~~vl-----~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~ 71 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVL-----SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGY 71 (251)
T ss_pred cEEEEeceEEEECCceEE-----EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEE
Confidence 578999999999887777 888 9999999999999999999999999999999 99999988763 34999
Q ss_pred EeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEE
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
++|++.....-..++.+++.+ . + ....+++.++++.++. ..+.++..||+||+||+++|++++.+|+++++
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~----~--~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 144 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRL----R--P-GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144 (251)
T ss_pred eccccccccccChhHHHHHhc----c--c-cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999964322111244443321 1 1 1123456677777763 34677889999999999999999999999999
Q ss_pred cCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh---hccccCCChHHHH
Q 023126 207 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVA 256 (287)
Q Consensus 207 d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~ 256 (287)
|+|+..||. .+++.+.++.. ..|++|||++++.. +++ +++++.|+++++.
T Consensus 145 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~~i~~~g~~~~~~ 208 (251)
T PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVS 208 (251)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECCceEeeCCHHHHh
Confidence 999999998 34444544432 24689999999876 443 6677888887764
No 193
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=230.17 Aligned_cols=199 Identities=14% Similarity=0.067 Sum_probs=151.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~---- 122 (287)
++++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 3 ~~l~~~~l~~~~~~~~~l-----~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 3 NIISAKDVHLSYGNYEAL-----HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred ceEEEEeeEEEECCeeee-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 478899999999887777 888 99999999999999999999999999999850 002799998887532
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc-hHHHHHHHHHHhcc------CCCCCCCCCCcccCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~lSgG~~q 189 (287)
...++|++|++..+ . .|+.+|+.+.....+..... ..+++.++++.++. ..+.++.+||+||+|
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPF-P--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred chHHHhhccEEEEecCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 23489999996533 3 69999998765443332111 22345666766653 235677899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|+++..||.. +++.+.++.. ..|++||+++.+.. |++ |++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999993 3444444432 34699999998766 544 7888888887764
No 194
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=5.7e-31 Score=235.61 Aligned_cols=197 Identities=17% Similarity=0.145 Sum_probs=152.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--------CcccccCCCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVK 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~--------~G~i~~~~~~ 121 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |+ +|+|.++|..
T Consensus 1 ml~~~nl~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 1 MLTADHLHVARRHRAIL-----RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred CeEEEEEEEEECCEeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEE
Confidence 36788999999887777 888 9999999999999999999999999999998 98 8999988754
Q ss_pred C--------CceeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCccc
Q 023126 122 P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 187 (287)
Q Consensus 122 ~--------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~ 187 (287)
. ...++|++|++..++. +|+.+|+.+..... +.......+++.++++.++. ..++++.+|||||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 2 1247999999654343 79999987643211 11111233456777777763 3567888999999
Q ss_pred CCchhhhhhhc---------cCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----
Q 023126 188 GDPVEDDILVG---------LQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---- 243 (287)
Q Consensus 188 ~qrv~ia~al~---------~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---- 243 (287)
+||+++|++++ .+|++|++|+++..||. .+++.++++.. ..|++|||++.+.. +++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~ 230 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLAD 230 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 99999999999 59999999999999998 44455554432 24699999998865 444
Q ss_pred hccccCCChHHHHH
Q 023126 244 KRHISTGKPPDVAK 257 (287)
Q Consensus 244 gr~v~~G~~~ev~~ 257 (287)
|++++.|+++++..
T Consensus 231 G~i~~~g~~~~~~~ 244 (272)
T PRK13547 231 GAIVAHGAPADVLT 244 (272)
T ss_pred CeEEEecCHHHHcC
Confidence 78888888877643
No 195
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-30 Score=233.88 Aligned_cols=199 Identities=15% Similarity=0.103 Sum_probs=153.4
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
..++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 18 ~~~~l~i~nl~~~~~~~~il-----~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 18 AAPAMAAVNLTLGFAGKTVL-----DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRS 89 (276)
T ss_pred cCcEEEEeeEEEEECCEEEe-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEE
Confidence 45688999999999987777 888 9999999999999999999999999999997 7 69999888743
Q ss_pred C---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhccC------CCCCCCCCCc
Q 023126 122 P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH 185 (287)
Q Consensus 122 ~---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lSg 185 (287)
. ...++|++|++.. ++ .|+++|+.+....... ......+++.+.++.++.. .+..+.+||+
T Consensus 90 i~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSg 166 (276)
T PRK14271 90 IFNYRDVLEFRRRVGMLFQRPNP-FP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSG 166 (276)
T ss_pred ccccchhHHHhhheEEeccCCcc-CC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCH
Confidence 2 2358999998653 33 6999999875432221 1111223445666666532 3466789999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||+||++||++++.+|+++++|+++..+|.. +.+.+.++.+ .+|++||+++++.. |++ |++++.|++
T Consensus 167 Gq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~ 246 (276)
T PRK14271 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPT 246 (276)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999983 3344444432 34699999998876 444 788888988
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 247 ~~~~~ 251 (276)
T PRK14271 247 EQLFS 251 (276)
T ss_pred HHHHh
Confidence 88754
No 196
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=9.4e-31 Score=254.15 Aligned_cols=199 Identities=16% Similarity=0.193 Sum_probs=154.1
Q ss_pred CCCccccCcccccccc-----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-CC
Q 023126 48 AQPVFGKTRSLVQNKT-----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QV 120 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-~~ 120 (287)
..++++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++ +.
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~ 347 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAV-----DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGD 347 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEE-----eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCC
Confidence 4568999999999952 3456 888 9999999999999999999999999999999 999999884 32
Q ss_pred C--------------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-------CCCC
Q 023126 121 K--------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVY 179 (287)
Q Consensus 121 ~--------------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------~~~~ 179 (287)
. .+..++|++|++..++ .+|+.+|+.+.... ..+.....+++.++++.++.. .+++
T Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 424 (520)
T TIGR03269 348 EWVDMTKPGPDGRGRAKRYIGILHQEYDLYP--HRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKY 424 (520)
T ss_pred ccccccccchhhHHHHhhhEEEEccCcccCC--CCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCC
Confidence 1 1234899999864333 48999999875322 222222334667788888743 3678
Q ss_pred CCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----h
Q 023126 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----K 244 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----g 244 (287)
+.+||||||||++||++++.+|++|++|||+..||. .+++.++++.. .+|++|||++++.. |++ |
T Consensus 425 ~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G 504 (520)
T TIGR03269 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDG 504 (520)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999 34455544432 24699999999876 444 7
Q ss_pred ccccCCChHHHHH
Q 023126 245 RHISTGKPPDVAK 257 (287)
Q Consensus 245 r~v~~G~~~ev~~ 257 (287)
++++.|+++++..
T Consensus 505 ~i~~~g~~~~~~~ 517 (520)
T TIGR03269 505 KIVKIGDPEEIVE 517 (520)
T ss_pred EEEEECCHHHHHh
Confidence 8888888777643
No 197
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=1.3e-30 Score=227.83 Aligned_cols=181 Identities=15% Similarity=0.146 Sum_probs=141.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----CCcccccCCCCC------CceeEEEeCCCCCCCcccC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVKP------PDVATVLPMDGFHLYLSQL 141 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p----~~G~i~~~~~~~------~~~i~~v~qd~~~~~~~~l 141 (287)
+++ +++++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+. ...++|++|++...+.+.+
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 667 9999999999999999999999999999998 9 899999988542 2468999999742233447
Q ss_pred CccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh-
Q 023126 142 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 215 (287)
Q Consensus 142 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe- 215 (287)
|+.+|+.+.....+.......+++.++++.++.. .+.++..||+||+||+++|++++.+|+++++|+|+..+|.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 8888887654433332222345677888887743 4677889999999999999999999999999999999998
Q ss_pred ---hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 216 ---GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 216 ---~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+++.+.++.. ..|++||+++++.. +++ |++++.|+++++.
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 34455555432 24699999998865 444 7888888887764
No 198
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-30 Score=229.52 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=152.1
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC---CCcccccCCCCC-
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKASSFDSQVKP- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p---~~G~i~~~~~~~- 122 (287)
+.++++++++++.|+.+.++ +++ +++.+|+++||+|+||||||||+++|+|+++. .| ++|+|.++|...
T Consensus 2 ~~~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~ 75 (252)
T PRK14255 2 AKKIITSSDVHLFYGKFEAL-----KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIY 75 (252)
T ss_pred CcceEEEEeEEEEECCeeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEcc
Confidence 34678999999999987777 888 99999999999999999999999999998630 04 589998887532
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc-hHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF-NPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ . .|+.+|+.+.....+..... ..+++.+.++.++. ..+..+.+||+|
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 152 (252)
T PRK14255 76 APNEDVVQLRKQVGMVFQQPNPF-P--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGG 152 (252)
T ss_pred cccccHHHhcCeEEEEECCCccC-C--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHH
Confidence 23589999986533 2 59999998765443322111 12344555665542 245677899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||. .+.+.+.++.+ ..|++||+++.+.. |++ |++++.|++.
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999 34444444432 34799999999876 544 7888888887
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 233 ~~~~ 236 (252)
T PRK14255 233 QMFL 236 (252)
T ss_pred HHhc
Confidence 7643
No 199
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2.6e-30 Score=223.58 Aligned_cols=181 Identities=14% Similarity=0.045 Sum_probs=143.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.+.++++++++++.|+++.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~ 78 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVF-----GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRG 78 (214)
T ss_pred CCcceEEEeeEEEecCCceee-----ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccch
Confidence 345689999999999887777 888 9999999999999999999999999999999 9999999887543
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..+. .+|+.+|+.+.....+ ....+.+.+.++.++ ...+.++..||+||+||+++|++++
T Consensus 79 ~~~~~i~~~~q~~~~~~--~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 79 DRSRFMAYLGHLPGLKA--DLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred hhhhceEEeecCccccc--CCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 234899999865433 4799999887644332 123345567777776 3457788899999999999999999
Q ss_pred cCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.+|+++++|+++..+|.. +++.+.++.+ ..|++|||++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPP 202 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhh
Confidence 999999999999999994 3344433322 24699999998865
No 200
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.1e-30 Score=227.73 Aligned_cols=175 Identities=17% Similarity=0.176 Sum_probs=138.3
Q ss_pred CCccccCcccccccccch----hhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLK----VLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~----~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~ 123 (287)
.++++++++++.|..+.. ...+..+++ |.+++||++||+|+||||||||.|+|.|+++ |++|+|++.|.+..
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~ 78 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDIT 78 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchh
Confidence 357788888888865321 012344777 9999999999999999999999999999999 99999988775421
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
. ++ .....+++.++|+.++ ....+++.+|||||+||+.||+|++.+
T Consensus 79 ~----------------~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~ 127 (268)
T COG4608 79 K----------------LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN 127 (268)
T ss_pred h----------------cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence 0 11 2234567888999888 355789999999999999999999999
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhh-------cC-ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMF-------DE-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~-------~~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++++.|+++..||-.+...+.+++ .. .+|||||+.++.. |++ |++++.|..++++.
T Consensus 128 P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 128 PKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred CcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999984333333332 22 3699999999988 554 99999999999875
No 201
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=228.89 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=150.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~-- 122 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ | ++|++.++|...
T Consensus 3 ~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFYGENQAL-----KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEECCeeee-----ecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEccc
Confidence 67889999999887777 898 9999999999999999999999999999987 7 489998877432
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCcccC
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVG 188 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~ 188 (287)
...++|++|++..+ . .|+.+|+.+.....+.... ...+++.+.++.++. ..+.++.+||+||+
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~-~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPF-P--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ 151 (249)
T ss_pred ccchHHHHhheeEEecCCCcC-c--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence 23489999996533 2 6999999876443332211 122345556665542 23567789999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
||++||++++.+|+++++|+++..+|.. +++.+.++.. .+|++||+++.+.. |++ |++++.|+++++
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999993 3444444432 34699999998776 444 888888887765
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 232 ~ 232 (249)
T PRK14253 232 F 232 (249)
T ss_pred H
Confidence 3
No 202
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.97 E-value=2.4e-30 Score=225.47 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=142.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 5 ~~~i~~~~l~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKIL-----NNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKP 76 (225)
T ss_pred CceEEEeccEEeeCCceee-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCH
Confidence 4578999999999877777 888 9999999999999999999999999999999 9999999887532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~a 196 (287)
...++|++|++..+ . .|+.+|+.+....++. ....+++.++++.++. ..+.++.+||+||+||+++|++
T Consensus 77 ~~~~~~i~~~~q~~~l~-~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLF-G--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred HHHHhccEEEecccccc-c--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHH
Confidence 23589999996533 3 4999998875433321 1234456778888774 2467888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
++.+|+++++|+|+..||.. +.+.+.++.. ..|++|||++++.
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99999999999999999993 3344444432 2469999999874
No 203
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=230.95 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=149.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~---- 122 (287)
++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++.. .|++|+|.++|...
T Consensus 9 ~~l~i~~v~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAV-----KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred eEEEEeeeEEEECCEEEe-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 578999999999877667 888 999999999999999999999999999997500 02789998887532
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCcccCCc
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..+ + .|+.+|+.+.....+.. ....+++.++++.++. ..+..+.+|||||+||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPF-P--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred cChHHHhhhEEEEccCCccc-c--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence 23489999986533 2 48999998754332221 1122344455555442 3456788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh-------------hcccc
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL-------------KRHIS 248 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~-------------gr~v~ 248 (287)
++||++++.+|+++++|+++..||.. +++.+.++.. .+|++||+++++.. |++ |++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999993 3444444432 34699999999877 332 67788
Q ss_pred CCChHHHHH
Q 023126 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~ev~~ 257 (287)
.|+++++..
T Consensus 240 ~~~~~~~~~ 248 (264)
T PRK14243 240 FDRTEKIFN 248 (264)
T ss_pred eCCHHHHHh
Confidence 888888753
No 204
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-30 Score=225.15 Aligned_cols=171 Identities=16% Similarity=0.139 Sum_probs=139.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC------------CCceeEEEeCCCCCCCcccCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~------------~~~~i~~v~qd~~~~~~~~ltv 143 (287)
+.++..-+++|.|+||||||||+|+|+|+.+ |+.|.|.++|.. .++++||+|||.-.++ ++||
T Consensus 19 ~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFp--H~tV 93 (352)
T COG4148 19 FTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFP--HYTV 93 (352)
T ss_pred ccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhhheeeeEeecccccc--ceEE
Confidence 5555557999999999999999999999999 999999888742 2456999999976555 4999
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hh
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GV 217 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~ 217 (287)
+.|+.|+.... ....+.++.+.++ ...++++.+|||||||||+|++||...|++|++||++.-||+ ++
T Consensus 94 rgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei 167 (352)
T COG4148 94 RGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI 167 (352)
T ss_pred ecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH
Confidence 99999875432 3344555556666 567889999999999999999999999999999999999999 55
Q ss_pred HHHHHHhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 218 WKDVSSMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 218 ~~~l~~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+..++.+.++ ++||||.++++.+ +++ |++.+.|..+++..
T Consensus 168 lpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 168 LPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 5555555554 3599999999988 655 89999999888754
No 205
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=3.3e-30 Score=252.08 Aligned_cols=196 Identities=17% Similarity=0.034 Sum_probs=152.0
Q ss_pred CCCCccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 47 NAQPVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
+.+++++++++++.|+ ++.++ +++ +.|.+|++++|+||||||||||+++|+|+++ |++|+|.+++. .
T Consensus 2 ~~~~~l~i~~l~~~y~~~~~il-----~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~ 70 (556)
T PRK11819 2 MAQYIYTMNRVSKVVPPKKQIL-----KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---I 70 (556)
T ss_pred cccEEEEEeeEEEEeCCCCeee-----eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---C
Confidence 4567999999999998 67777 999 9999999999999999999999999999999 99999987643 3
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHh--------------cCCCCC----------------------chHHHHHHH
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNC 168 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~--------------~~~~~~----------------------~~~~~~~~~ 168 (287)
.++|++|++...+ .+|+.+|+.+.... ...... ....++.++
T Consensus 71 ~i~~v~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 71 KVGYLPQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred EEEEEecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 5999999965433 48999999764211 011100 012345667
Q ss_pred HHHhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHH----HHHHhhcCceEEEeCHHHHHH---
Q 023126 169 LKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFDEKWFIEVDLDTAMQ--- 240 (287)
Q Consensus 169 l~~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~----~l~~~~~~~i~vtHd~~~~~~--- 240 (287)
++.++. ..++++.+||||||||++||++++.+|++|++|||+..||+...+ .++++...+|++|||++++..
T Consensus 149 l~~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 149 MDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred HHhCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC
Confidence 777763 346788899999999999999999999999999999999994444 444443345799999999876
Q ss_pred HHh----hccc-cCCChHHH
Q 023126 241 RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 241 rv~----gr~v-~~G~~~ev 255 (287)
+++ |+++ ..|..++.
T Consensus 229 ~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 229 WILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred eEEEEeCCEEEEecCCHHHH
Confidence 444 6765 56776654
No 206
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=1.3e-30 Score=278.55 Aligned_cols=203 Identities=15% Similarity=0.062 Sum_probs=168.0
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..+.+++++++++.|+. +.++ +++ +.|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1933 ~~~~~L~v~nLsK~Y~~~~~~aL-----~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1933 NKTDILRLNELTKVYSGTSSPAV-----DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSIL 2004 (2272)
T ss_pred CCCceEEEEEEEEEECCCCceEE-----EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECc
Confidence 34568999999999986 4677 888 9999999999999999999999999999999 9999999988543
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
...+||++|++.... .+|++|++.+....++.+.....+.+.++++.++ ...++++.+||||||||+++|
T Consensus 2005 ~~~~~~r~~IGy~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2005 TNISDVHQNMGYCPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred chHHHHhhhEEEEeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHH
Confidence 245999999865443 4899999998776666654434456677888877 455788999999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
+|++.+|+++++|||+..+|+ .+|+.+.++.+. +|++||+++++.. |++ |++++.|+++++...+
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 999999999999999999999 566666665432 4699999999987 554 8899999999875544
No 207
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-30 Score=231.80 Aligned_cols=202 Identities=11% Similarity=0.028 Sum_probs=153.6
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~- 122 (287)
..+++++++++++.|+.+.++ +++ +.+++|+++||+|+||||||||+++|+|+++. .+|++|+|.++|.+.
T Consensus 21 ~~~~~l~~~nl~~~~~~~~il-----~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 21 DEQTALEVRNLNLFYGDKQAL-----FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred CCCcEEEEEEEEEEECCeeEe-----eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 456789999999999877777 888 99999999999999999999999999999860 012799998877432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
+..++|++|++..+ . .|+.+|+.+.....+.... ...+++.+.++.++. ..+..+.+||+|
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPF-P--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172 (272)
T ss_pred ccccCHHHHhccEEEEecCCccC-c--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHH
Confidence 23589999986533 3 3899999876443332111 123445666666553 245678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|+||+++|++++.+|+++++|+++..||.. +++.+.++.+ ..|++||+++++.. |++ |++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999993 4444444432 24689999999765 544 7888888887
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 253 ~~~ 255 (272)
T PRK14236 253 TLF 255 (272)
T ss_pred HHh
Confidence 764
No 208
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=3.9e-30 Score=233.02 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=168.0
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-- 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~-- 121 (287)
..++++.++|+++.|+.....+.+. +++ |.+.+||.+||+|+||||||-.++.+.++++.. .--+|+|.++|.+
T Consensus 2 ~~~~lL~v~nLsV~f~~~~~~~~aV-k~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll 80 (534)
T COG4172 2 MTMPLLSIRNLSVAFHQEGGTVEAV-KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80 (534)
T ss_pred CCCcceeeeccEEEEecCCcceEee-ccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhh
Confidence 4678999999999998433222222 677 999999999999999999999999999999631 1135788888864
Q ss_pred ----------CCceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCCCCchHHHHHHHHHHhcc-----CCCCCCCCCCc
Q 023126 122 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRN-----QGSVYAPSFDH 185 (287)
Q Consensus 122 ----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~-----~~~~~~~~lSg 185 (287)
..+.|+++||+++.-.++-.|+...+...... .+...+...+++.++|+.++. ..+.++.+|||
T Consensus 81 ~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSG 160 (534)
T COG4172 81 AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSG 160 (534)
T ss_pred cCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCc
Confidence 24569999999988777777888888776654 455666778899999999983 34678999999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----C----ceEEEeCHHHHHH---HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E----KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~----~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||+|||+||+|++..|++||.|+++..||-.+...+.+++. + .+|||||+..+.+ |++ |++++.|
T Consensus 161 GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~ 240 (534)
T COG4172 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETG 240 (534)
T ss_pred chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecC
Confidence 99999999999999999999999999999844444433332 2 3699999999988 665 8999999
Q ss_pred ChHHHHH
Q 023126 251 KPPDVAK 257 (287)
Q Consensus 251 ~~~ev~~ 257 (287)
.++++..
T Consensus 241 ~t~~lF~ 247 (534)
T COG4172 241 TTETLFA 247 (534)
T ss_pred cHHHHhh
Confidence 9888764
No 209
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=3.9e-30 Score=223.81 Aligned_cols=180 Identities=17% Similarity=0.086 Sum_probs=138.5
Q ss_pred ccccCcccccccc-------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC--CC
Q 023126 51 VFGKTRSLVQNKT-------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV 120 (287)
Q Consensus 51 ~~~~~~~~~~~~~-------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~--~~ 120 (287)
+++++++++.|+. ..++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++ |.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~ 72 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVL-----KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGA 72 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEE-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCC
Confidence 3677889999963 3456 888 9999999999999999999999999999999 999999886 31
Q ss_pred --CC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCC
Q 023126 121 --KP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF 183 (287)
Q Consensus 121 --~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~l 183 (287)
+. ...++|++|++..++ .+|+.+|+.+.....+.......+++.++++.++.. .+.++.+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIP--RVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred ccchhhcCHHHHHHHHhcceEEEecccccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 21 135899999965433 479999998754433322222345667788877742 35678899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|+||+||+++|++++.+|+++++|||+..+|.. +.+.++++.+ ..+++||+++.+..
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~ 214 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVREL 214 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999999993 4444444432 24699999887753
No 210
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.2e-30 Score=223.94 Aligned_cols=170 Identities=16% Similarity=0.117 Sum_probs=133.4
Q ss_pred cccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------------
Q 023126 56 RSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------------ 122 (287)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------------ 122 (287)
++++.|++.. + ++ +++++ ++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 5 ~l~~~~~~~~-~------~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~ 73 (214)
T cd03297 5 DIEKRLPDFT-L------KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQ 73 (214)
T ss_pred eeeEecCCee-e------CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhH
Confidence 7889998753 2 55 99999 9999999999999999999999999 9999998877432
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
...++|++|+...++ .+|+.+|+.+....+ ......+++.++++.++. ..+.++.+|||||+||+++|++++.+
T Consensus 74 ~~~i~~~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (214)
T cd03297 74 QRKIGLVFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ 149 (214)
T ss_pred hhcEEEEecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence 235899999965433 379999988754322 112234466778888773 34678889999999999999999999
Q ss_pred ccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 201 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 201 a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++++|+|+..||. .+++.+.++.. ..|++|||++++..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 197 (214)
T cd03297 150 PELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEY 197 (214)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHH
Confidence 999999999999999 34445555432 24699999998765
No 211
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=3.3e-30 Score=207.76 Aligned_cols=194 Identities=16% Similarity=0.127 Sum_probs=159.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC--------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------- 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-------- 121 (287)
.+.++++.+.||....+ -++ +..+.|+.+.++||||+|||||++.|.=+.- |.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q~l-----fdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~ 73 (242)
T COG4161 2 SIQLNGINCFYGAHQAL-----FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPS 73 (242)
T ss_pred ceEEcccccccccchhe-----eeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCcc
Confidence 35678999999988777 677 9999999999999999999999999998887 999997665532
Q ss_pred ------CCceeEEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 122 ------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
.++.+|+++|. |++++ ++||.+|+... .+..|.++.+...++.++|.++. ...++.+-.|||||+|||+
T Consensus 74 ~k~i~~lr~~vgmvfqq-y~lwp-hltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 74 DKAIRDLRRNVGMVFQQ-YNLWP-HLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHHHHHHhhhhhhhh-hccCc-hhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 12448999998 44443 59999998774 45667777777778888998877 6778888899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hccccCCChHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHISTGKPPD 254 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~~G~~~e 254 (287)
||+|++.+|++|++|+++..||++ +...++++...+ +++||..+++.. +++ |++++.|+..-
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999995 445556666655 499999999987 665 89999887543
No 212
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=6e-31 Score=260.27 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=154.5
Q ss_pred CCccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+.-+++++++++|+.. ..+ +++ +.+++||.+||+|+||||||||+|+|.|++. |++|+|.++|.+.
T Consensus 469 ~g~I~~~nvsf~y~~~~~~vL-----~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i 540 (709)
T COG2274 469 QGEIEFENVSFRYGPDDPPVL-----EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDI 540 (709)
T ss_pred CceEEEEEEEEEeCCCCcchh-----hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhc
Confidence 3457889999999976 566 888 9999999999999999999999999999999 9999999999764
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCC----CCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lS 184 (287)
++.++|++||++.+. -|++||+.+. .|... .+.+.+++...+ .+.+.. -..||
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~---gSI~eNi~l~-----~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LS 611 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFS---GSIRENIALG-----NPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLS 611 (709)
T ss_pred CHHHHHhheeEEcccchhhc---CcHHHHHhcC-----CCCCC-HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCC
Confidence 456999999987655 4899999864 23222 233333332222 233333 34899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhh--cCceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~--~~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|+..+|++|++||++.-||+ .+.+.+.+.. .+.|+|+|.+..+.. |++ |+++++|+.
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 9999999999999999999999999999999 3555556665 456899999999988 665 999999999
Q ss_pred HHHHHH
Q 023126 253 PDVAKW 258 (287)
Q Consensus 253 ~ev~~~ 258 (287)
+|+...
T Consensus 692 ~ell~~ 697 (709)
T COG2274 692 EELLAQ 697 (709)
T ss_pred HHHHHh
Confidence 998754
No 213
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=2.3e-30 Score=222.87 Aligned_cols=176 Identities=14% Similarity=0.012 Sum_probs=140.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----Cc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PD 124 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~ 124 (287)
+++++++++.|+.+.++ +++ +.+.+|+++||+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 2 ~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (207)
T PRK13539 2 MLEGEDLACVRGGRVLF-----SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAE 73 (207)
T ss_pred EEEEEeEEEEECCeEEE-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHh
Confidence 57889999999877777 888 9999999999999999999999999999999 9999999887542 23
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.++|++|+...++ .+|+.+|+.+.....+. ..+++.++++.++. ..+.++.+||+||+||+++|++++.+|+
T Consensus 74 ~~~~~~~~~~~~~--~~tv~~~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 74 ACHYLGHRNAMKP--ALTVAENLEFWAAFLGG----EELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred hcEEecCCCcCCC--CCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 4789987754333 37999998775433321 23456777887773 3467778999999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++++|+|+..+|. .+++.+.++.. ..+++||+++++..
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG 192 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence 9999999999998 44455554432 24699999998765
No 214
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.5e-30 Score=228.31 Aligned_cols=196 Identities=14% Similarity=0.070 Sum_probs=151.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCCC-
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVKP- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~~- 122 (287)
++++++++++.|+.+.++ +++ +++++|++++|+|+||||||||+++|+|+++ | ++|+|.++|...
T Consensus 6 ~~l~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~ 77 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAI-----EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY 77 (259)
T ss_pred ceEEEEEEEEEECCeEee-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence 468899999999877666 888 9999999999999999999999999999987 6 489999887532
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc------CCCCCCCCCCcc
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDHG 186 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSgG 186 (287)
...++|++|++..+ + .|+.+|+.+.....+. +.....+.+.+.++.++. ..+.++.+||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 154 (259)
T PRK14260 78 DPRININRLRRQIGMVFQRPNPF-P--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGG 154 (259)
T ss_pred ccccchHhhhhheEEEecccccC-C--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 13589999996533 2 6999999876443321 222223455666766653 345678899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH--h-------hcccc
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L-------KRHIS 248 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--~-------gr~v~ 248 (287)
|+||++||++++.+|+++++|+++..+|. .+++.+.++.. .+|++||+++++.. |+ + |++++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999998 44455555432 34699999999876 32 2 67778
Q ss_pred CCChHHHH
Q 023126 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~ev~ 256 (287)
.|++.++.
T Consensus 235 ~~~~~~~~ 242 (259)
T PRK14260 235 FGVTTQIF 242 (259)
T ss_pred eCCHHHHh
Confidence 88888764
No 215
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.6e-30 Score=249.21 Aligned_cols=194 Identities=12% Similarity=0.071 Sum_probs=153.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
.+++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 316 ~~~~l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i 384 (530)
T PRK15064 316 HRNALEVENLTKGFDNGPLF-----KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANI 384 (530)
T ss_pred CCceEEEEeeEEeeCCceee-----cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEE
Confidence 35689999999999887777 888 9999999999999999999999999999999 99999988764 459
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+....+.+.+|+.+++.+.. . .....+++.++++.++. ..+.++.+||||||||+++|++++.+|++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~----~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l 459 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWR----Q-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV 459 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhc----c-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE
Confidence 9999986432333478888875321 1 11234567788888764 34778899999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh----hccc-cCCChHHHHH
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev~~ 257 (287)
|++|||+..||.. +++.+.++...+|++|||++++.. |++ |+++ ..|++.++.+
T Consensus 460 llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 460 LVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999994 344444443345799999999876 444 6776 6788777643
No 216
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.7e-30 Score=229.51 Aligned_cols=199 Identities=14% Similarity=0.083 Sum_probs=151.0
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
+..++++++++++.|+.+.++ +++ +.+.+||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l-----~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~ 87 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLAL-----VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMND---LIPGAKVEGRLLYRDR 87 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEE-----eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---cccCCCcCceEEECCE
Confidence 455689999999999887677 888 9999999999999999999999999999985 4 5899988875
Q ss_pred CC----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc------cCCCCCCCCCC
Q 023126 121 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------NQGSVYAPSFD 184 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~------~~~~~~~~~lS 184 (287)
.. ...++|++|++..+ . .++.+|+.+.....+... ...+.+.+.++.++ ...+.++.+||
T Consensus 88 ~l~~~~~~~~~~~~~i~~v~q~~~l~-~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 163 (274)
T PRK14265 88 NIYDSQINSVKLRRQVGMVFQRPNPF-P--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALS 163 (274)
T ss_pred ecccccchhHHHhhcEEEEccCCccc-c--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCC
Confidence 42 23589999996543 2 489999987543322211 12233445555544 23467788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HH--h----------
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L---------- 243 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv--~---------- 243 (287)
|||+||+++|+|++.+|+++++|+++..||.. +++.+.++.. .+|++|||++.+.. |+ +
T Consensus 164 gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~ 243 (274)
T PRK14265 164 GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKR 243 (274)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999993 4444444432 24699999999876 32 1
Q ss_pred -hccccCCChHHHHH
Q 023126 244 -KRHISTGKPPDVAK 257 (287)
Q Consensus 244 -gr~v~~G~~~ev~~ 257 (287)
|++++.|++.++..
T Consensus 244 ~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 244 RGKLVEFSPTEQMFG 258 (274)
T ss_pred CceEEEeCCHHHHHh
Confidence 56778888888753
No 217
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-30 Score=249.63 Aligned_cols=192 Identities=14% Similarity=0.067 Sum_probs=149.8
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---------C
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------P 123 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---------~ 123 (287)
++++++.|+++.++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+. .
T Consensus 1 ~~nl~~~~~~~~il-----~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~ 72 (491)
T PRK10982 1 MSNISKSFPGVKAL-----DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALE 72 (491)
T ss_pred CCceEEEeCCEEee-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHh
Confidence 35788899877777 888 9999999999999999999999999999999 9999999888542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHh-cCC--CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~--~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
..++|++|++..++ .+|+.+|+.+.... .+. ......+++.++++.++. ..++++.+||||||||+++|++++
T Consensus 73 ~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 73 NGISMVHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred CCEEEEeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 35899999965333 38999998764321 111 111223456778888773 446778899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
.+|++|++|||+..||. .+++.+.++.+ ..|++|||++++.. |++ |++++.|+++++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999998 34444555432 24699999999876 444 788888877664
No 218
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.96 E-value=4.1e-30 Score=224.77 Aligned_cols=178 Identities=16% Similarity=0.183 Sum_probs=135.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---ceeEEEeCCCCCCCcccCCccccHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDPK 148 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---~~i~~v~qd~~~~~~~~ltv~e~i~ 148 (287)
+++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|.... ...+|++|++..++ .+|+.+|+.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~--~~tv~e~l~ 76 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQNYSLLP--WLTVRENIA 76 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecCcccCC--CCCHHHHHH
Confidence 456 8999999999999999999999999999999 99999998875432 22589999865443 379999998
Q ss_pred HHHHhc--CCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHH
Q 023126 149 EAHARR--GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKD 220 (287)
Q Consensus 149 ~~~~~~--~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~ 220 (287)
+....+ +.......+++.+.++.++. ..+.++.+|||||+||+++|++++.+|+++++|||+..||. .+++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 753211 11112223456777887763 44677889999999999999999999999999999999998 44455
Q ss_pred HHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 221 VSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 221 l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
+.++.+ ..|++|||++++.. +++ |++++.|...++
T Consensus 157 l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 555432 24699999998766 444 777777765443
No 219
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.96 E-value=5.6e-30 Score=219.44 Aligned_cols=173 Identities=13% Similarity=0.011 Sum_probs=136.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+..+ +++ +++++|+++||+|+||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 l~i~~l~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (201)
T cd03231 1 LEADELTCERDGRALF-----SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIA 72 (201)
T ss_pred CEEEEEEEEeCCceee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhh
Confidence 3567889999877777 888 9999999999999999999999999999999 9999998887542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|++...+ .+|+.+|+.+.... ...+++.++++.++. ..+.++.+||+||+||+++|++++.+|
T Consensus 73 ~~i~~~~q~~~~~~--~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 144 (201)
T cd03231 73 RGLLYLGHAPGIKT--TLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR 144 (201)
T ss_pred hheEEeccccccCC--CcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 35899998865333 37999998764211 134566777777763 346778899999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++++|||+..||.. +++.+.++.. ..|++|||......
T Consensus 145 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 145 PLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 999999999999983 3444444322 24689999876644
No 220
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.96 E-value=5.4e-30 Score=218.99 Aligned_cols=174 Identities=13% Similarity=0.014 Sum_probs=137.6
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------C
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~ 123 (287)
++++++++.|+.+.++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|... .
T Consensus 1 l~~~~l~~~~~~~~~l-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~ 72 (198)
T TIGR01189 1 LAARNLACSRGERMLF-----EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPH 72 (198)
T ss_pred CEEEEEEEEECCEEEE-----eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhh
Confidence 3567889999887777 888 9999999999999999999999999999999 9999999888542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
..++|++|+...++ .+|+.+|+.+.....+ ...+++.++++.++ ...+.++.+||+||+||+++|++++.+|
T Consensus 73 ~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 73 RNILYLGHLPGLKP--ELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred hheEEeccCccccc--CCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35889998754332 3799999987654332 12345667777776 3456788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+++++|+|+..||. .+++.+.++.+ ..|++||+.....
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV 191 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence 99999999999998 44455554422 2469999986543
No 221
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.8e-30 Score=227.17 Aligned_cols=199 Identities=14% Similarity=0.065 Sum_probs=153.1
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCC
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQV 120 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~ 120 (287)
+.++.++++++++.|+.+.++ +++ +++++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 12 ~~~~~l~~~~l~~~~~~~~vl-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~ 83 (265)
T PRK14252 12 PTQQKSEVNKLNFYYGGYQAL-----KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPD 83 (265)
T ss_pred CCCceEEEEEEEEEECCeeee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCc
Confidence 456789999999999877777 888 9999999999999999999999999999987 6 7899988764
Q ss_pred CC------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC-chHHHHHHHHHHhcc------CCCCCCC
Q 023126 121 KP------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAP 181 (287)
Q Consensus 121 ~~------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~ 181 (287)
.. ...++|++|++..+. .|+.+|+.+.....+.... ...+++.++++.++. ..+..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~---~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 160 (265)
T PRK14252 84 NVNILSPEVDPIEVRMRISMVFQKPNPFP---KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAF 160 (265)
T ss_pred cccccccccCHHHHhccEEEEccCCcCCc---chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc
Confidence 21 235899999965442 3899999876543333221 123455566665542 2356778
Q ss_pred CCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hcccc
Q 023126 182 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
.||+||+||+++|++++.+|+++++|+++..||.. +.+.+.++.. ..+++||+++++.. |++ |++++
T Consensus 161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999983 3344444432 34699999999876 554 78888
Q ss_pred CCChHHHH
Q 023126 249 TGKPPDVA 256 (287)
Q Consensus 249 ~G~~~ev~ 256 (287)
.|+.+++.
T Consensus 241 ~g~~~~~~ 248 (265)
T PRK14252 241 FGATDTIF 248 (265)
T ss_pred eCCHHHHH
Confidence 88887764
No 222
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.3e-30 Score=250.39 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=150.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
|+++++++++.|+++.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~il-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 74 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKAL-----DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT 74 (501)
T ss_pred ceEEEeeeEEEECCEEEE-----eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence 578999999999887777 888 9999999999999999999999999999999 9999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHH--hcCC-CCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~--~~~~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
+..++|++|++..++ .+|+.+|+.+... .++. ......+++.++++.++. ..++++.+||||||||++||
T Consensus 75 ~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 75 AALAAGVAIIYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHhCCEEEEEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 235899999865333 4799999887432 1121 112224567788888874 34677889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
++++.+|+++++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |+++..+.
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 999999999999999999999 34444444432 24699999999876 444 66665443
No 223
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.96 E-value=5.5e-30 Score=224.80 Aligned_cols=173 Identities=15% Similarity=0.070 Sum_probs=132.1
Q ss_pred ccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------CceeEEEe
Q 023126 59 VQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PDVATVLP 130 (287)
Q Consensus 59 ~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~~~i~~v~ 130 (287)
..|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++... ...++|++
T Consensus 29 ~~~~~~~il-----~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 100 (236)
T cd03267 29 RKYREVEAL-----KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVF 100 (236)
T ss_pred cccCCeeee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEc
Confidence 455666666 888 9999999999999999999999999999999 9999999877532 23588987
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcC
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~ 208 (287)
++...++ +.+|+.+|+.+....++.......+++.++++.++ ...+.++..||+||+||+++|++++.+|+++++||
T Consensus 101 ~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 101 GQKTQLW-WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred CCccccC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4432222 24799999887655444322223345566777766 33467788999999999999999999999999999
Q ss_pred cccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 209 NYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+..||. .+.+.+.++.+ ..|++||+++++..
T Consensus 180 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 219 (236)
T cd03267 180 PTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEA 219 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHH
Confidence 9999999 34444554432 24699999998765
No 224
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.96 E-value=5e-30 Score=274.13 Aligned_cols=201 Identities=16% Similarity=0.143 Sum_probs=166.3
Q ss_pred CCCccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
..+.++++++++.|+ ++.++ +++ +.+.+||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 925 ~~~~L~I~nLsK~y~~~~k~aL-----~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 925 LVPGVCVKNLVKIFEPSGRPAV-----DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIET 996 (2272)
T ss_pred CCceEEEEeEEEEecCCCceEE-----EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcc
Confidence 456899999999995 45677 888 9999999999999999999999999999999 9999999988543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~ 195 (287)
++.++|++|++..++ .+|+.||+.+....++.+.....+++.++++.++. ..++++.+||||||||+++|+
T Consensus 997 ~~~~~r~~IG~~pQ~~~L~~--~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 997 NLDAVRQSLGMCPQHNILFH--HLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred hHHHHhhcEEEEecCCcCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence 245899999975443 48999999987766665444445567888888873 457788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|++.+++++++||++..+|+ .+|+.|+++.. .+|++||+++++.. |++ |++++.|++.++.+.
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999 56666666643 24699999999876 554 888899998887554
No 225
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.9e-30 Score=226.42 Aligned_cols=198 Identities=13% Similarity=0.071 Sum_probs=154.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCcccccCCCC
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK 121 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-----~~G~i~~~~~~ 121 (287)
+.+++.++.+.+.|+...++ +++ +.+.+|+++||+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~ 76 (261)
T PRK14263 5 APIVMDCKLDKIFYGNFMAV-----RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQD 76 (261)
T ss_pred CCceEEEEeEEEEeCCEEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEe
Confidence 34678889999999987777 888 9999999999999999999999999999997 7 79999988754
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
. .+.++|++|++..+ . +|+.+|+.+.....+.. ....+++.++++.++. ..+.++..||+
T Consensus 77 i~~~~~~~~~~~~~i~~v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~ 152 (261)
T PRK14263 77 VYGKGVDPVVVRRYIGMVFQQPNPF-S--MSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSG 152 (261)
T ss_pred ccccccchHhhhhceEEEecCCccc-c--ccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCH
Confidence 2 23489999997543 3 79999998765433321 2233466777777663 22356679999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH--h----------h
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV--L----------K 244 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv--~----------g 244 (287)
||+||+++|+|++.+|+++++|+++..||. .+++.+.++.. ..|++||+++++.. |+ + |
T Consensus 153 G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G 232 (261)
T PRK14263 153 GQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTG 232 (261)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCc
Confidence 999999999999999999999999999999 44555555432 24689999998876 32 2 5
Q ss_pred ccccCCChHHHHH
Q 023126 245 RHISTGKPPDVAK 257 (287)
Q Consensus 245 r~v~~G~~~ev~~ 257 (287)
++++.|+++++..
T Consensus 233 ~i~~~g~~~~~~~ 245 (261)
T PRK14263 233 YLVEMGPTAQIFQ 245 (261)
T ss_pred eEEEeCCHHHHHh
Confidence 7778888777653
No 226
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.96 E-value=5e-30 Score=222.64 Aligned_cols=177 Identities=16% Similarity=0.031 Sum_probs=139.4
Q ss_pred cccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 52 FGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
++++++++.|+. +.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 l~~~~l~~~~~~~~~~~~il-----~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~ 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVL-----FDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGAS 73 (220)
T ss_pred EEEEEEEEEccCCCcceeEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcC
Confidence 567888888864 4566 888 9999999999999999999999999999999 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..++ .+|+.+|+.+....++ .......+++.++++.++. ..+..+.+||+||+||++
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~ 151 (220)
T TIGR02982 74 EKELVQLRRNIGYIFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVA 151 (220)
T ss_pred HhHHHHHHhheEEEcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH
Confidence 245899999975443 3799999987654332 2222234467788888773 346678899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTA 238 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~ 238 (287)
+|++++.+|+++++|+++..+|.. +++.+.++.+ ..|++||+++..
T Consensus 152 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~ 205 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL 205 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 999999999999999999999993 4455555432 246999999853
No 227
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=1e-29 Score=208.75 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=160.5
Q ss_pred CCccccCcccccccccchhhh-----hhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNKTSLKVLC-----SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.++++++++++.|..+..++. +....+|++++|+.+||+|.||||||||+|+|+|+++ |++|+|.+++...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~ 78 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH 78 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence 467888999999987765533 3333349999999999999999999999999999999 9999999998653
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCch
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv 191 (287)
.+.+-+++||+...+++.+.+.+.+...++... .......+++.+.|..+| +..+.++..||-||||||
T Consensus 79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV 158 (267)
T COG4167 79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV 158 (267)
T ss_pred ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence 355899999988777777777666666554432 222334557778888888 456678889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHHHHH----HhhcC----ceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFDE----KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~~l~----~~~~~----~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|+|++.+|+++|.|+.+..||-.+.-.+. ++.+. -|||+.++..+.. .++ |.+++.|.+.++.
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 9999999999999999999999974333333 33222 3699999999887 444 8999999999976
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 239 a 239 (267)
T COG4167 239 A 239 (267)
T ss_pred c
Confidence 4
No 228
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.8e-30 Score=233.87 Aligned_cols=203 Identities=11% Similarity=0.071 Sum_probs=154.5
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~ 121 (287)
+...+++++++++.|.. ..++ +++ ++|.+|+++||+|+||||||||+++|+|+++.. .|++|+|.++|.+
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L-----~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~ 150 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVL-----HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150 (329)
T ss_pred CcCceEEEEeeEEEecCCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 44468899999999953 4566 888 999999999999999999999999999998510 1469999988765
Q ss_pred C----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch-HHHHHHHHHHhcc------CCCCCCCCCC
Q 023126 122 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRN------QGSVYAPSFD 184 (287)
Q Consensus 122 ~----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~-~~~~~~~l~~l~~------~~~~~~~~lS 184 (287)
. +..++|++|++..+ + .|+++|+.+.....+...... .+.+.+.++.++. ..+.+...||
T Consensus 151 i~~~~~~~~~lr~~i~~v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LS 227 (329)
T PRK14257 151 TRSKKISSLELRTRIGMVFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALS 227 (329)
T ss_pred ccccccchHhhhccEEEEecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCC
Confidence 3 24599999997644 3 699999987643322221111 1224555555542 3456788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGK 251 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~ 251 (287)
|||+||++||+|++.+++++++|+++..+|.. +.+.++++.+ ..|++||+++.+.. |++ |++++.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999993 4444444443 34699999999876 555 89999999
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
+.++..
T Consensus 308 ~~~l~~ 313 (329)
T PRK14257 308 TKTIFI 313 (329)
T ss_pred HHHHhc
Confidence 999853
No 229
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.2e-30 Score=249.61 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=152.7
Q ss_pred CCCccccCccccccc---ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCCC
Q 023126 48 AQPVFGKTRSLVQNK---TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~~ 122 (287)
..++++++++++.|+ ...++ +++ +++++|+++||+|+||||||||+|+|+|+++ | ++|+|.++|.+.
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl-----~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~ 327 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRV-----DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPV 327 (506)
T ss_pred CCceEEEecCccccccccccccc-----cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEEC
Confidence 356899999999994 34456 888 9999999999999999999999999999997 6 899999887432
Q ss_pred ---------CceeEEEeCCCC-CCCcccCCccccHHHHHH--hcCC---CCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 123 ---------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA--RRGA---PWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 123 ---------~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~--~~~~---~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
...++|++|++. ....+.+|+.+|+.+... ..+. ......+++.++++.++. ..++++.+||
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 407 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLS 407 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCC
Confidence 124899999853 112234899999986532 1111 112233567788888874 3467888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||||||++||++++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999 34444444433 24699999999876 444 7888777
Q ss_pred ChHHH
Q 023126 251 KPPDV 255 (287)
Q Consensus 251 ~~~ev 255 (287)
+++++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 76665
No 230
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-29 Score=205.87 Aligned_cols=203 Identities=15% Similarity=0.119 Sum_probs=157.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
..+|++.+.++++.||.+... +++ |.+.|||++||+|+||||||||+++|++.+. |++|+|.+.....
T Consensus 2 ~~~PLL~V~~lsk~Yg~~~gc-----~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~ 73 (258)
T COG4107 2 MDKPLLSVSGLSKLYGPGKGC-----RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPR 73 (258)
T ss_pred CCCcceeehhhhhhhCCCcCc-----cccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCch
Confidence 467899999999999999999 999 9999999999999999999999999999999 9999986543211
Q ss_pred --------------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc---CCCCCCCCCC
Q 023126 123 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFD 184 (287)
Q Consensus 123 --------------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lS 184 (287)
+..-|+++|++..-..-..+...|+-......|. ......+.+.++|++++. ..+..+.++|
T Consensus 74 dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFS 153 (258)
T COG4107 74 DLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFS 153 (258)
T ss_pred hHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccc
Confidence 1126899999765444334455566543322221 112345567788888884 4456788999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcC--------ceEEEeCHHHHHH---HHh----hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE--------KWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~--------~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||+||+.||+.+...||++++|+++-.||-.+...+.++... .+++|||+.++.- |.+ |++++.
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999666666655542 3699999999865 444 789999
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
|-++.+..
T Consensus 234 GLTDrvLD 241 (258)
T COG4107 234 GLTDRVLD 241 (258)
T ss_pred cccccccc
Confidence 98877654
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.9e-29 Score=229.40 Aligned_cols=203 Identities=11% Similarity=0.078 Sum_probs=154.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc--CCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~--~p~~G~i~~~~~~~- 122 (287)
.+.+++.++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++.. +|++|+|.++|...
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL-----~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHAL-----KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred CCCceEEEEEEEEEeCCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 566789999999999987777 888 999999999999999999999999999998500 14899999887432
Q ss_pred ---------CceeEEEeCCCCCCCcccCCccccHHHHHHhcC------------CCC-CchHHHHHHHHHHhcc------
Q 023126 123 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRN------ 174 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~------ 174 (287)
...++|++|+... ++ .|+.+|+.+.....+ ... ....+++.++++.++.
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 192 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNP-FP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVND 192 (305)
T ss_pred cccccHHHHhhceEEEccCCcc-cc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhH
Confidence 2358999999653 33 499999987543221 110 1123445666666653
Q ss_pred CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HH-h-
Q 023126 175 QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RV-L- 243 (287)
Q Consensus 175 ~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv-~- 243 (287)
..+.++.+|||||+||++||++++.+|++|++|+++..||. .+++.|+++.+ ..|++||+++.+.. |+ +
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~ 272 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVF 272 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEE
Confidence 23567889999999999999999999999999999999999 34444544433 24699999999876 53 2
Q ss_pred ---hccccCCChHHHHH
Q 023126 244 ---KRHISTGKPPDVAK 257 (287)
Q Consensus 244 ---gr~v~~G~~~ev~~ 257 (287)
|++++.|+++++..
T Consensus 273 l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 273 LTGGELVEYDDTDKIFE 289 (305)
T ss_pred ecCCEEEEeCCHHHHHh
Confidence 78888888877643
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=7.4e-30 Score=225.86 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=147.3
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 7 ~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 81 (251)
T PRK14244 7 SVKNLNLWYGSKQIL-----FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV 81 (251)
T ss_pred EeeeEEEEECCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence 467888888876667 888 99999999999999999999999999999740 013699998877432
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC--CchHHHHHHHHHHhccC------CCCCCCCCCcccCCch
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~lSgG~~qrv 191 (287)
+..++|++|++..++ .++.+|+.+.....+... ....+.+.++++.++.. .+..+..||+||+||+
T Consensus 82 ~~~~~~i~~v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv 158 (251)
T PRK14244 82 VLLRAKVGMVFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRL 158 (251)
T ss_pred HHHhhhEEEEecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHH
Confidence 235899999965332 388999987643333211 11233456777777642 3457789999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|++++.+++++++|+++..||. .+.+.+.++.. .+|++|||++++.. |++ |++++.|++.++.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 159 CIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999998 34444444432 24699999998875 544 7888888877764
No 233
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=8.9e-30 Score=221.66 Aligned_cols=179 Identities=19% Similarity=0.220 Sum_probs=137.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---CceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
+++++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+. ...++|++|++...+...+|+.+|+.+...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4689999999999999999999999999999 9999999998653 345899999975433223688888876422
Q ss_pred hc-C---CCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHH
Q 023126 153 RR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVS 222 (287)
Q Consensus 153 ~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~ 222 (287)
.. + .+.....+++.++++.++. ..+.++.+||+||+||++++++++.+|+++++|+|+..||. .+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 1 1112234567778887773 34667889999999999999999999999999999999998 3444555
Q ss_pred Hhhc---CceEEEeCHHHHHH---HHh---hccccCCChHHHHH
Q 023126 223 SMFD---EKWFIEVDLDTAMQ---RVL---KRHISTGKPPDVAK 257 (287)
Q Consensus 223 ~~~~---~~i~vtHd~~~~~~---rv~---gr~v~~G~~~ev~~ 257 (287)
++.+ ..|++|||++++.. +++ |++++.|+++++..
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEECCEEEeecCHHHhcC
Confidence 4433 24799999998766 433 78888888777643
No 234
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.96 E-value=6.5e-30 Score=222.68 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=136.1
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
+.++++++.|+...++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|.... ...
T Consensus 23 l~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~~~ 90 (224)
T cd03220 23 LGILGRKGEVGEFWAL-----KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----LLG 90 (224)
T ss_pred hhhhhhhhhcCCeEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----hhc
Confidence 7788999999998888 999 9999999999999999999999999999999 99999999875321 111
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcC
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~ 208 (287)
.. ..+ .+.+|+.+|+.+....++.......+++.++++.++ ...+.++.+||+||+||+++|++++.+|+++++|+
T Consensus 91 ~~-~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 91 LG-GGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cc-ccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 112 234799999987655443322222345566776666 34467788999999999999999999999999999
Q ss_pred cccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH
Q 023126 209 NYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 209 ~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
|+..||. .+++.+.+.... .|++||+++++..
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~ 207 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKR 207 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999998 345555554332 4699999998765
No 235
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.96 E-value=1.8e-30 Score=227.74 Aligned_cols=193 Identities=15% Similarity=0.149 Sum_probs=141.8
Q ss_pred ccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+. ..++ +++ +++.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~~~l~~~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~ 73 (237)
T cd03252 2 TFEHVRFRYKPDGPVIL-----DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAW 73 (237)
T ss_pred EEEEEEEecCCCCccce-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHH
Confidence 56788888864 3455 888 9999999999999999999999999999999 9999999988542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH-----HHHHHHHHhc----cCCCCCCCCCCcccCCchh
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR----NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++.. ++ .|+.+|+.+... ........+ .+.+.++.+. ...+.++.+|||||+||++
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~ 148 (237)
T cd03252 74 LRRQVGVVLQENVL-FN--RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIA 148 (237)
T ss_pred HhhcEEEEcCCchh-cc--chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHH
Confidence 2358999999653 33 589999865321 111000000 1122233331 1234577899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
+|++++.+|+++++|+++..||. .+++.+.++.. ..|++|||++++.. +++ |++++.|+++++..+
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE 226 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999999999999 34445554433 24689999999854 443 788888888876544
No 236
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.2e-29 Score=217.23 Aligned_cols=173 Identities=13% Similarity=-0.009 Sum_probs=137.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------- 123 (287)
+.++++++.|+++.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|....
T Consensus 2 l~~~~l~~~~~~~~il-----~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~ 73 (200)
T PRK13540 2 LDVIELDFDYHDQPLL-----QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ 73 (200)
T ss_pred EEEEEEEEEeCCeeEE-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence 5678999999877777 888 9999999999999999999999999999999 99999999886432
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+....+ .+|+.+|+.+..... .....+.++++.++. ..+.++..||+||+||+++|++++.+|
T Consensus 74 ~~i~~~~q~~~~~~--~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 74 KQLCFVGHRSGINP--YLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred hheEEeccccccCc--CCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 35899999855333 389999988753211 123456777777663 346677899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+++++|+++..+|. .+++.+.++.+ ..|++||+.+.+.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 191 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc
Confidence 99999999999999 34455554422 2468999988764
No 237
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=235.35 Aligned_cols=182 Identities=14% Similarity=0.062 Sum_probs=150.8
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++.+++|.|++..+. +++ +++++|||.||+|+||||||||+++|.|+++ |++|+|+++|...
T Consensus 2 ~~~l~~~~itK~f~~~~An-----d~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 2 EPALEMRGITKRFPGVVAN-----DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred CceEEEeccEEEcCCEEec-----CceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCH
Confidence 4678999999999988888 999 9999999999999999999999999999999 9999999998653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcC---CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~i 193 (287)
+.-||+++|.....+ .+||.||+..+..... ...+...+++.++.++.+ ...+.++.+||-|+||||.|
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI 151 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI 151 (501)
T ss_pred HHHHHcCCcEEeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence 233899999944433 3999999998754321 122334556677777777 45567889999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
-.+|..++++||+|||+..|-+ ++++.++.+... +|||||-++++++
T Consensus 152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 9999999999999999999987 566666666654 4799999999988
No 238
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.96 E-value=4.5e-30 Score=248.29 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=150.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p--~~G~i~~~~~~~----- 122 (287)
+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ | ++|+|.++|...
T Consensus 1 ~l~i~~l~~~~~~~~il-----~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKAL-----DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred CEEEEeEEEEeCCeEee-----cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence 36788999999877777 888 9999999999999999999999999999998 7 799999887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhc--C--CCCCchHHHHHHHHHHhccCC---CCCCCCCCcccCCch
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~lSgG~~qrv 191 (287)
...++|++|++..++ .+|+.+|+.+..... + .......+++.++++.++... ++++.+||||||||+
T Consensus 73 ~~~~~~~i~~v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred HHHHhCCEEEEeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 235899999965333 489999987754321 1 111122346677888887432 456889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
++|++++.+|+++++|||+..||.. +++.++++.+ .+|++|||++++.. +++ |+++..|+++++
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999993 4444444433 24699999999876 444 777777766543
No 239
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=2.1e-29 Score=246.22 Aligned_cols=195 Identities=16% Similarity=0.022 Sum_probs=148.7
Q ss_pred CCccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 49 QPVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 49 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
+.+++++++++.|+ .+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 2 ~~~i~~~nls~~~~~~~~il-----~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i 70 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEIL-----KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKV 70 (552)
T ss_pred cEEEEEeeEEEecCCCCeee-----cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEE
Confidence 56889999999998 66677 888 9999999999999999999999999999999 99999988652 459
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHh--------------cCCCCCc----------------------hHHHHHHHHH
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLK 170 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~ 170 (287)
+|++|++..++ .+|+.+|+.+.... +..+... ...++.++++
T Consensus 71 ~~v~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (552)
T TIGR03719 71 GYLPQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMD 148 (552)
T ss_pred EEEeccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHh
Confidence 99999975433 38999999864321 0111110 0123445555
Q ss_pred Hhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHH----HhhcCceEEEeCHHHHHH---HH
Q 023126 171 NLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFDEKWFIEVDLDTAMQ---RV 242 (287)
Q Consensus 171 ~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~----~~~~~~i~vtHd~~~~~~---rv 242 (287)
.++. ..+.++.+||||||||+++|++++.+|++|++|||+..||....+.+. +....+|++|||++.+.. ++
T Consensus 149 ~~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v 228 (552)
T TIGR03719 149 ALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWI 228 (552)
T ss_pred hCCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeE
Confidence 5553 246778899999999999999999999999999999999994444443 333345799999999876 44
Q ss_pred h----hccc-cCCChHHHH
Q 023126 243 L----KRHI-STGKPPDVA 256 (287)
Q Consensus 243 ~----gr~v-~~G~~~ev~ 256 (287)
+ |+++ ..|..+++.
T Consensus 229 ~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 229 LELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred EEEECCEEEEecCCHHHHH
Confidence 4 6755 567776643
No 240
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-29 Score=245.28 Aligned_cols=193 Identities=13% Similarity=0.045 Sum_probs=149.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
+++++++++.|+++.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.+++. ..++|+
T Consensus 1 ml~i~~ls~~~~~~~il-----~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~ 69 (530)
T PRK15064 1 MLSTANITMQFGAKPLF-----ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKL 69 (530)
T ss_pred CEEEEEEEEEeCCcEeE-----eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEE
Confidence 36788999999887777 998 9999999999999999999999999999999 99999988763 348999
Q ss_pred eCCCCCCCcccCCccccHHHHHHh-----------cCCCC---------------------CchHHHHHHHHHHhccC--
Q 023126 130 PMDGFHLYLSQLDAMEDPKEAHAR-----------RGAPW---------------------TFNPLLLLNCLKNLRNQ-- 175 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e~i~~~~~~-----------~~~~~---------------------~~~~~~~~~~l~~l~~~-- 175 (287)
+|++..+. .+|+.+++.+.... .+.+. .....++.++++.++..
T Consensus 70 ~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 147 (530)
T PRK15064 70 RQDQFAFE--EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE 147 (530)
T ss_pred eccCCcCC--CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence 99865333 47999998753210 01000 01234566778888743
Q ss_pred -CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH---HHh----
Q 023126 176 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---- 243 (287)
Q Consensus 176 -~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---- 243 (287)
.+.++.+|||||+||+++|++++.+|++|++|||+..||....+.+.++.. .+|++|||++.+.. +++
T Consensus 148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 245678999999999999999999999999999999999955544444432 34699999999876 554
Q ss_pred hccc-cCCChHHHH
Q 023126 244 KRHI-STGKPPDVA 256 (287)
Q Consensus 244 gr~v-~~G~~~ev~ 256 (287)
|+++ ..|.++++.
T Consensus 228 g~i~~~~g~~~~~~ 241 (530)
T PRK15064 228 GELRVYPGNYDEYM 241 (530)
T ss_pred CEEEEecCCHHHHH
Confidence 7774 678877654
No 241
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=224.78 Aligned_cols=198 Identities=13% Similarity=0.064 Sum_probs=151.2
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-----CcccccCCCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVKP 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-----~G~i~~~~~~~ 122 (287)
.++++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |+ +|+|.++|.+.
T Consensus 5 ~~~l~~~nl~~~~~~~~il-----~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i 76 (261)
T PRK14258 5 IPAIKVNNLSFYYDTQKIL-----EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNI 76 (261)
T ss_pred cceEEEeeEEEEeCCeeEe-----eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEh
Confidence 4578999999999877666 888 9999999999999999999999999999998 85 78887766432
Q ss_pred ----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCC-CCCchHHHHHHHHHHhcc------CCCCCCCCCCc
Q 023126 123 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRN------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~-~~~~~~~~~~~~l~~l~~------~~~~~~~~lSg 185 (287)
...++|++|+... +. .|+.+|+.+.....+. +.....+++.++++.++. ..+.++.+||+
T Consensus 77 ~~~~~~~~~~~~~i~~~~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 153 (261)
T PRK14258 77 YERRVNLNRLRRQVSMVHPKPNL-FP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG 153 (261)
T ss_pred hccccchHHhhccEEEEecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 2348999998653 33 6999999875443332 211223455667777653 24567789999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh---c-CceEEEeCHHHHHH---HHh---------hc
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL---------KR 245 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~---~-~~i~vtHd~~~~~~---rv~---------gr 245 (287)
||+||+++|++++.+|+++++|+|+..+|.. +++.+.++. . ..|++|||++++.. |++ |+
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~ 233 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQ 233 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCce
Confidence 9999999999999999999999999999993 444455432 1 24689999999876 332 56
Q ss_pred cccCCChHHHHH
Q 023126 246 HISTGKPPDVAK 257 (287)
Q Consensus 246 ~v~~G~~~ev~~ 257 (287)
++..|+++++..
T Consensus 234 i~~~~~~~~~~~ 245 (261)
T PRK14258 234 LVEFGLTKKIFN 245 (261)
T ss_pred EEEeCCHHHHHh
Confidence 777888888744
No 242
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.3e-30 Score=225.60 Aligned_cols=193 Identities=15% Similarity=0.116 Sum_probs=142.2
Q ss_pred cccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+.+ .++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 1 i~~~~l~~~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVL-----RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeCCCCccce-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHH
Confidence 3567888888765 566 888 9999999999999999999999999999999 9999999887532
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH------HHHHHHHHhc----cCCCCCCCCCCcccCCc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL------LLLNCLKNLR----NQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~------~~~~~l~~l~----~~~~~~~~~lSgG~~qr 190 (287)
.+.++|++|++..+ . .|+.+|+.+..... . ..... .+.+.++.+. ...+.++..||+||+||
T Consensus 73 ~~~~~i~~~~q~~~~~-~--~tv~enl~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr 146 (234)
T cd03251 73 SLRRQIGLVSQDVFLF-N--DTVAENIAYGRPGA--T-REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR 146 (234)
T ss_pred HHHhhEEEeCCCCeec-c--ccHHHHhhccCCCC--C-HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH
Confidence 23489999996543 2 58999886542211 0 00111 1223333331 22356678999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
+++|++++.+|+++++|+|+..||. .+++.+.++.+. .|++||+++.+.. +++ |++++.|+++++...
T Consensus 147 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999998 344444444332 4689999999865 443 777778877776443
No 243
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.7e-29 Score=215.43 Aligned_cols=173 Identities=11% Similarity=0.030 Sum_probs=134.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----cee
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----DVA 126 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----~~i 126 (287)
++++++++.|+.+... + + +.+++|+++||+|+||||||||+++|+|+++ |++|++.++|.+.. ..+
T Consensus 2 l~~~~l~~~~~~~~l~-----~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~ 72 (195)
T PRK13541 2 LSLHQLQFNIEQKNLF-----D-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC 72 (195)
T ss_pred eEEEEeeEEECCcEEE-----E-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence 5678889999765544 6 7 9999999999999999999999999999999 99999999886532 347
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|+....+ .+|+.+|+.+....++ ..+.+.++++.++ ...++.+..||+||+||++++++++.+|+++
T Consensus 73 ~~~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~l 145 (195)
T PRK13541 73 TYIGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLW 145 (195)
T ss_pred EeccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89998754333 3799999987543332 2345566666665 3356778899999999999999999999999
Q ss_pred EEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|+++..+|.. +++.+++..+ ..+++||+++.+..
T Consensus 146 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 146 LLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS 188 (195)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence 999999999983 3344432222 24689999987643
No 244
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=3e-29 Score=215.74 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=133.9
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
+.+..++++++++.|+. ..++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~~l~~~~l~~~~~~~~~~~l-----~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~ 73 (207)
T cd03369 2 PEHGEIEVENLSVRYAPDLPPVL-----KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDIS 73 (207)
T ss_pred CCCCeEEEEEEEEEeCCCCcccc-----cCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhH
Confidence 34556888999999975 3455 888 9999999999999999999999999999999 9999999887542
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
...++|++|++.. +. .|+.+|+.+.. ....+.+.+.++ .+.++..||+||+||+++|+
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~-~~--~tv~~~l~~~~-------~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~lar 138 (207)
T cd03369 74 TIPLEDLRSSLTIIPQDPTL-FS--GTIRSNLDPFD-------EYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLAR 138 (207)
T ss_pred HCCHHHHHhhEEEEecCCcc-cC--ccHHHHhcccC-------CCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHH
Confidence 2459999999753 33 48888885321 112333444443 45678899999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+++.+|+++++|+++..+|.. +++.++++.. ..|++||+++.+..
T Consensus 139 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 139 ALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 999999999999999999994 4445554432 24699999999865
No 245
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3e-29 Score=221.79 Aligned_cols=198 Identities=12% Similarity=0.071 Sum_probs=149.6
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcc--cCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~--~~p~~G~i~~~~~~~----- 122 (287)
+++++++++.|+.+.++ +++ +++.+|++++|+|+||||||||+++|+|+++. ..|++|+|.++|...
T Consensus 3 ~l~~~~v~~~~~~~~~l-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 77 (250)
T PRK14266 3 RIEVENLNTYFDDAHIL-----KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77 (250)
T ss_pred EEEEEeEEEEeCCeEEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence 46788999999877777 888 99999999999999999999999999998631 013899999888542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC-CchHHHHHHHHHHhcc------CCCCCCCCCCcccCCc
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..+ . .|+.+|+.+....++... ....+++.+.++.++. ..+.++..||+||+||
T Consensus 78 ~~~~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 78 DVVELRKKVGMVFQKPNPF-P--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQR 154 (250)
T ss_pred cHHHHhhheEEEecCCccC-c--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHH
Confidence 23489999996533 3 489999987644333221 1123445666666542 2356788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++|++++.+|+++++|+++..+|.. +.+.+.++.. ..|++||+++++.. +++ |++++.|++.++.
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999999993 3444444432 24689999999887 332 7888888888764
No 246
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.9e-29 Score=220.06 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=138.4
Q ss_pred cccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 52 FGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 52 ~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
++++++++.|+. +.++ +++ +++.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~~~~~~~~l-----~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 74 (229)
T cd03254 3 IEFENVNFSYDEKKPVL-----KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKS 74 (229)
T ss_pred EEEEEEEEecCCCCccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHH
Confidence 567889999974 4566 888 9999999999999999999999999999999 9999999887542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc-------------cCCCCCCCCCCcccC
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHGVG 188 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~lSgG~~ 188 (287)
...++|++|++.. +. .|+.+|+.+.... .....+.+.++.++ ...+..+.+||+||+
T Consensus 75 ~~~~i~~~~q~~~~-~~--~tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~ 145 (229)
T cd03254 75 LRSMIGVVLQDTFL-FS--GTIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER 145 (229)
T ss_pred HhhhEEEecCCchh-hh--hHHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence 2458999999643 32 3888887653211 11122222222211 122456789999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||+++|++++.+|+++++|+|+..||. .+++.+.++.. ..|++||+++.+.. +++ |++++.|+.+++.
T Consensus 146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999998 34444444432 24699999998754 333 6777777666554
No 247
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1.7e-29 Score=243.63 Aligned_cols=190 Identities=10% Similarity=-0.011 Sum_probs=147.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.+++...
T Consensus 3 ~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~ 74 (490)
T PRK10938 3 SLQISQGTFRLSDTKTL-----QLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ 74 (490)
T ss_pred eEEEEeEEEEcCCeeec-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence 58899999999877677 888 9999999999999999999999999999999 9999998766432
Q ss_pred -CceeEEEeCCCCCC-Cc-----ccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhh
Q 023126 123 -PDVATVLPMDGFHL-YL-----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 123 -~~~i~~v~qd~~~~-~~-----~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~i 193 (287)
...++|++|++... .. ..+++.+++... ....+++.++++.++. ..++++.+||||||||++|
T Consensus 75 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 75 LQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred HHHHhceeccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHH
Confidence 12378999975321 11 124555544321 1234567788888873 4577889999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|++++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++.+.. +++ |+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999 34455555432 24699999999876 444 7888888877754
No 248
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.96 E-value=4.6e-29 Score=217.47 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=136.1
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|.. +.++ +++ +++++|++++|+||||||||||+++|+|+++..-|++|+|.++|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~ 77 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARIL-----NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77 (226)
T ss_pred cceeecceeeeecCccccccc-----cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChH
Confidence 5667888888864 4566 888 99999999999999999999999999999851004899998887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC---CCchHHHHHH-HHHHhcc--CCCCCCCCCCcccCCchhhh
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRN--QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~---~~~~~~~~~~-~l~~l~~--~~~~~~~~lSgG~~qrv~ia 194 (287)
...++|++|++..++ .+|+.+|+.+........ ......++.+ .++.++. ..+..+..||+||+||+++|
T Consensus 78 ~~~~~i~~~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la 155 (226)
T cd03234 78 QFQKCVAYVRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIA 155 (226)
T ss_pred HhcccEEEeCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHH
Confidence 345899999965443 479999998764433211 1111223334 6666663 34567889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCH-HHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL-DTAMQ 240 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~-~~~~~ 240 (287)
++++.+|+++++|+++..+|. .+++.+.++.+ ..+++||++ +++..
T Consensus 156 ral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~ 209 (226)
T cd03234 156 VQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFR 209 (226)
T ss_pred HHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHH
Confidence 999999999999999999998 44455554432 246899998 45554
No 249
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.96 E-value=2e-29 Score=218.68 Aligned_cols=170 Identities=11% Similarity=0.025 Sum_probs=129.1
Q ss_pred cccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~~~~~~~~~l-----~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03245 3 IEFRNVSFSYPNQEIPAL-----DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPA 74 (220)
T ss_pred EEEEEEEEEcCCCCcccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHH
Confidence 467888898875 4566 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCC-----------CCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGS-----------VYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~-----------~~~~~lSgG~ 187 (287)
...++|++|++..+ . .|+.+|+.+... . .....+.+.++.++. ..+ ..+.+|||||
T Consensus 75 ~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~----~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~ 145 (220)
T cd03245 75 DLRRNIGYVPQDVTLF-Y--GTLRDNITLGAP----L--ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQ 145 (220)
T ss_pred HHHhhEEEeCCCCccc-c--chHHHHhhcCCC----C--CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHH
Confidence 23589999997543 2 488888764311 1 122334445544431 111 2346999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+||+++|++++.+|+++++|+|+..||. .+++.+.++.. ..|++|||++..
T Consensus 146 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~ 202 (220)
T cd03245 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL 202 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 9999999999999999999999999999 44455555443 346899999975
No 250
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.96 E-value=4.3e-29 Score=220.95 Aligned_cols=196 Identities=15% Similarity=0.058 Sum_probs=146.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~-- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+|+||||||||+++|+|+ ++ |++|+|.++|....
T Consensus 5 ~~~l~~~~l~~~~~~~~~l-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~ 76 (252)
T CHL00131 5 KPILEIKNLHASVNENEIL-----KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDL 76 (252)
T ss_pred CceEEEEeEEEEeCCEEee-----ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccC
Confidence 3578999999999877677 888 99999999999999999999999999998 57 99999988875321
Q ss_pred ------c-eeEEEeCCCCCCCcccCCccccHHHHHHhc----CCCCC---chHHHHHHHHHHhccC---CCCCCC-CCCc
Q 023126 124 ------D-VATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWT---FNPLLLLNCLKNLRNQ---GSVYAP-SFDH 185 (287)
Q Consensus 124 ------~-~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----~~~~~---~~~~~~~~~l~~l~~~---~~~~~~-~lSg 185 (287)
. .+++++|++..+. .+++.+++.+..... +.... ...+++.++++.++.. .+..+. .|||
T Consensus 77 ~~~~~~~~~~~~~~q~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSg 154 (252)
T CHL00131 77 EPEERAHLGIFLAFQYPIEIP--GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSG 154 (252)
T ss_pred ChhhhheeeEEEEeccccccc--cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCH
Confidence 1 3678899865333 367888876543211 11110 1124556777777643 356666 5999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G 250 (287)
||+||+++|++++.+|+++++|+|+..||. .+++.+.++.. .+|++|||++.+.. +++ |++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999 34455555432 24699999998753 333 7888888
Q ss_pred ChHH
Q 023126 251 KPPD 254 (287)
Q Consensus 251 ~~~e 254 (287)
+++.
T Consensus 235 ~~~~ 238 (252)
T CHL00131 235 DAEL 238 (252)
T ss_pred Chhh
Confidence 7763
No 251
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.96 E-value=2.9e-29 Score=251.14 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=150.5
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++|.. ..++ +++ +++++|+.+||+|+||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL-----~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~ 522 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLIL-----DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDV 522 (686)
T ss_pred eEEEEEEEEEcCCCCccce-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCH
Confidence 5889999999953 4566 888 9999999999999999999999999999999 99999999997543
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCC----CCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lSgG 186 (287)
+.++|++||++.+. -|++||+.++ .+ .+.+++.++++..+ .+.+.. -..||||
T Consensus 523 ~~lr~~i~~v~Q~~~lf~---gTI~eNi~~~-----~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGG 592 (686)
T TIGR03797 523 QAVRRQLGVVLQNGRLMS---GSIFENIAGG-----AP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592 (686)
T ss_pred HHHHhccEEEccCCccCc---ccHHHHHhcC-----CC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 45999999987654 4999999763 22 23344445554433 222322 3479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||||+++|+|+..+|+++++||++.-+|. .+.+.+.++..+.|+|||+++.+.. +++ |+++++|+.+++.
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999998 4445555553456799999998876 655 8999999998876
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
+
T Consensus 673 ~ 673 (686)
T TIGR03797 673 A 673 (686)
T ss_pred h
Confidence 4
No 252
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.96 E-value=3.4e-29 Score=221.34 Aligned_cols=188 Identities=17% Similarity=0.129 Sum_probs=141.2
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 123 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-------- 123 (287)
+++++++. ..+ +++ +.+++|++++|+|+||||||||+++|+|+++ + +|+|.++|....
T Consensus 2 ~~~~l~~~----~~l-----~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~ 68 (248)
T PRK03695 2 QLNDVAVS----TRL-----GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELA 68 (248)
T ss_pred cccccchh----cee-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHh
Confidence 45666664 244 777 9999999999999999999999999999875 5 899998885431
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhcc--
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGL-- 199 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~-- 199 (287)
..++|++|++...+. +|+.+|+.+.... ........+++.++++.++. ..+.++..||+||+||+++|++++.
T Consensus 69 ~~i~~v~q~~~~~~~--~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~ 145 (248)
T PRK03695 69 RHRAYLSQQQTPPFA--MPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW 145 (248)
T ss_pred hheEEecccCccCCC--ccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 248999998654443 7999998764221 11222234566778887773 3467888999999999999999986
Q ss_pred -----CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 200 -----QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 200 -----~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+++++++|+|+..||. .+.+.+.++.. ..|++||+++++.. +++ |++++.|+.+++.
T Consensus 146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 6799999999999999 34444444432 24699999998766 443 7888888877763
No 253
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.1e-29 Score=244.16 Aligned_cols=194 Identities=15% Similarity=0.102 Sum_probs=146.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++++.|+ .++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 262 ~~~~l~~~~l~~~~~--~~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 262 HETVFEVRNVTSRDR--KKV-----RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRS 331 (510)
T ss_pred CCcEEEEeCccccCC--Ccc-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCC
Confidence 345799999998764 245 888 9999999999999999999999999999999 9999999887432
Q ss_pred -----CceeEEEeCCC--CCCCcccCCccccHHHHHHhc--------CC-CCCchHHHHHHHHHHhcc---CCCCCCCCC
Q 023126 123 -----PDVATVLPMDG--FHLYLSQLDAMEDPKEAHARR--------GA-PWTFNPLLLLNCLKNLRN---QGSVYAPSF 183 (287)
Q Consensus 123 -----~~~i~~v~qd~--~~~~~~~ltv~e~i~~~~~~~--------~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~l 183 (287)
...++|++|+. ..++ +.+|+.+|+.+....+ +. ......+++.++++.++. ..++++.+|
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 410 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITEL 410 (510)
T ss_pred HHHHHHCCcEEccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccC
Confidence 13489999984 2233 3489999987643211 11 111123456778888774 246788899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||||||++||++++.+|++|++|||+..||.. +++.+.++.. ..|++|||++.+.. |++ |++++.
T Consensus 411 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 490 (510)
T PRK09700 411 SGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQI 490 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999993 3444444332 24799999998876 444 677665
Q ss_pred CCh
Q 023126 250 GKP 252 (287)
Q Consensus 250 G~~ 252 (287)
++.
T Consensus 491 ~~~ 493 (510)
T PRK09700 491 LTN 493 (510)
T ss_pred ecC
Confidence 544
No 254
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=3.2e-29 Score=238.50 Aligned_cols=195 Identities=16% Similarity=0.163 Sum_probs=147.9
Q ss_pred CCccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 49 QPVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
.+++.++++++.|+.. .++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL-----~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-- 88 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYAL-----NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-- 88 (549)
T ss_pred cceeEEEEEEEecCCCccceEE-----eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee--
Confidence 3467888998888773 455 888 9999999999999999999999999999999 9999999887531
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++.+... ..+.+|+.+|+.+.....+.......+++.++++.++. ..+.++..|||||+||+++|+|++.+|+
T Consensus 89 ---~i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~ 163 (549)
T PRK13545 89 ---LIAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPD 163 (549)
T ss_pred ---eEEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 2222222 22347999998875443333222223345667777663 4567888999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+|++|+|+..||.. +++.+.++.+ ..|++|||++.+.. +++ |++++.|+++++...
T Consensus 164 LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 164 ILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999993 4455554432 24699999998876 444 888889998887654
No 255
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.4e-29 Score=248.15 Aligned_cols=194 Identities=12% Similarity=0.066 Sum_probs=149.6
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
.+.++++++++++.|+++.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 308 ~~~~~l~~~~l~~~y~~~~il-----~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ 376 (638)
T PRK10636 308 LPNPLLKMEKVSAGYGDRIIL-----DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IK 376 (638)
T ss_pred CCCceEEEEeeEEEeCCeeee-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EE
Confidence 567899999999999988777 898 9999999999999999999999999999999 99999988642 35
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++|+.........++.+++.. .........+.++|+.++. ..++++..||||||||++||++++.+|+
T Consensus 377 igy~~Q~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~ 450 (638)
T PRK10636 377 LGYFAQHQLEFLRADESPLQHLAR------LAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN 450 (638)
T ss_pred EEEecCcchhhCCccchHHHHHHH------hCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 899999742212222344443321 1112234567788888774 3467888999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh----hccc-cCCChHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev~~ 257 (287)
+|++|+|+..||.. +.+.|.++-..+|+||||++++.. |++ |+++ ..|..++...
T Consensus 451 lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 451 LLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999994 334444443345799999999876 444 7776 6788877643
No 256
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=246.01 Aligned_cols=192 Identities=13% Similarity=0.087 Sum_probs=151.2
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
-+++++++++|.+ +.++ +++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 341 ~i~~~~vsf~y~~~~~~il-----~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPAL-----RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTL 412 (582)
T ss_pred eEEEEEEEEecCCCCCccc-----cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCH
Confidence 5889999999965 4566 888 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG 186 (287)
.+.++|++|+++.+. -|+++|+.++. +...+.+++.+.++..+ .+.+..+ ..||||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~---~Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGG 484 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFN---DTIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484 (582)
T ss_pred HHHHhhceEEccCceeec---chHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHH
Confidence 245999999977554 48999997531 22233444444444433 2333333 469999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+++..+++++++||++..+|+ .+.+.+.++.. ..|+|||+++.+.. +++ |++++.|+.++
T Consensus 485 qrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAE 564 (582)
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999998 44455555532 35799999988776 555 89999999998
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+++.
T Consensus 565 l~~~ 568 (582)
T PRK11176 565 LLAQ 568 (582)
T ss_pred HHhC
Confidence 8654
No 257
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=6.7e-29 Score=242.70 Aligned_cols=197 Identities=14% Similarity=0.031 Sum_probs=151.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|+.+.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 319 ~~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i 387 (552)
T TIGR03719 319 GDKVIEAENLSKGFGDKLLI-----DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKL 387 (552)
T ss_pred CCeEEEEeeEEEEECCeeee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEE
Confidence 46789999999999887777 888 9999999999999999999999999999999 99999988542 258
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+...++ +.+|+.+|+.+....++... ......++++.++.. .++++.+||||||||+++|++++.+|++
T Consensus 388 ~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l 464 (552)
T TIGR03719 388 AYVDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV 464 (552)
T ss_pred EEEeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 99999853233 34799999887543222211 122345677777742 4678889999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh-----hccc-cCCChHHHHHH
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~-----gr~v-~~G~~~ev~~~ 258 (287)
+++|||+..||.. +++.+.++...+|++|||++++.. |++ |+++ ..|..++..+.
T Consensus 465 llLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~ 532 (552)
T TIGR03719 465 LLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEED 532 (552)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHH
Confidence 9999999999994 444444443345799999999876 443 2444 44666554433
No 258
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=6.7e-29 Score=242.85 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=151.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|+.+.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..+
T Consensus 321 ~~~~l~~~~l~~~~~~~~~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i 389 (556)
T PRK11819 321 GDKVIEAENLSKSFGDRLLI-----DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKL 389 (556)
T ss_pred CCeEEEEEeEEEEECCeeee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEE
Confidence 45689999999999988777 888 9999999999999999999999999999999 99999988542 258
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+...++ +.+|+.+|+.+.....+... ......++++.++.. .++++.+|||||+||+++|++++.+|++
T Consensus 390 ~~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 466 (556)
T PRK11819 390 AYVDQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV 466 (556)
T ss_pred EEEeCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999852222 34899999887543222211 122345677777742 4678889999999999999999999999
Q ss_pred EEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH---HHh-----hccc-cCCChHHHHHH
Q 023126 204 VIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ---RVL-----KRHI-STGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~---rv~-----gr~v-~~G~~~ev~~~ 258 (287)
|++|||+..||.. +++.|.++...+|++|||++++.. |++ |++. ..|..++..++
T Consensus 467 llLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 467 LLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999983 444454443345799999998876 443 2333 35666665443
No 259
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.95 E-value=8.5e-29 Score=220.63 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=134.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|. +++++|+.... +.+|+.+|+.+..
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~-----~~~~~~~~~~~--~~~tv~enl~~~~ 110 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGE-----VSVIAISAGLS--GQLTGIENIEFKM 110 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE-----EeEEecccCCC--CCCcHHHHHHHHH
Confidence 777 9999999999999999999999999999999 99999988774 45666664332 3479999987654
Q ss_pred HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF 225 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~ 225 (287)
...+.......+.+.++++.++ ...+.++.+||+||+||+++|++++.+|++|++|+|+..+|.. +++.+.++.
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~ 190 (264)
T PRK13546 111 LCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK 190 (264)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 4333322222233445555544 4456678899999999999999999999999999999999983 444454443
Q ss_pred c---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 226 D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 226 ~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
. ..|++||+++.+.. +++ |++++.|+.+++...+
T Consensus 191 ~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234 (264)
T ss_pred HCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHh
Confidence 2 24699999998866 444 7888889888876543
No 260
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.95 E-value=1.4e-29 Score=222.22 Aligned_cols=191 Identities=12% Similarity=0.099 Sum_probs=138.8
Q ss_pred ccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 53 GKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 53 ~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++.|+. +.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~i~~l~~~~~~~~~~~~l-----~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 2 EFKNVSFRYPSRPDVPIL-----KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred eEEEEEEecCCCCCccce-----eceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHH
Confidence 56788888864 3456 888 9999999999999999999999999999999 9999999888542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHH------HHHHHHHhc----cCCCCCCCCCCcccCCc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL------LLNCLKNLR----NQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~------~~~~l~~l~----~~~~~~~~~lSgG~~qr 190 (287)
...++|++|++..+ . .|+.+|+.+..... . ...... +.+.+..+. ...+..+.+|||||+||
T Consensus 74 ~~~~~i~~~~q~~~~~-~--~tv~e~l~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 147 (238)
T cd03249 74 WLRSQIGLVSQEPVLF-D--GTIAENIRYGKPDA--T-DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR 147 (238)
T ss_pred HHHhhEEEECCchhhh-h--hhHHHHhhccCCCC--C-HHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH
Confidence 23589999996533 2 58888886532111 0 001111 112222221 12345678999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++|++++.+|+++++|+|+..||. .+++.++++.. ..|++||+++++.. +++ |++++.|+.+++..
T Consensus 148 v~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 148 IAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999998 44455554432 24689999998854 433 77777787666543
No 261
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=2.7e-29 Score=242.90 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=147.0
Q ss_pred CCccccCcccccc---cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQN---KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~---~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~~- 122 (287)
.++++++++++.| +.+.++ +++ +.+.+|+++||+||||||||||+++|+|+++ | ++|+|.++|...
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l-----~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~ 326 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRV-----DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVD 326 (500)
T ss_pred CceEEEeCCccccccccccccc-----ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECC
Confidence 4579999999998 344566 888 9999999999999999999999999999998 7 799999887432
Q ss_pred --------CceeEEEeCCCC--CCCcccCCccccHHHHHH-hc-C---CCCCchHHHHHHHHHHhccC---CCCCCCCCC
Q 023126 123 --------PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 184 (287)
Q Consensus 123 --------~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~-~~-~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS 184 (287)
+..++|++|+.. .++ +.+|+.+|+.+... .. . .......+++.++++.++.. .++++.+||
T Consensus 327 ~~~~~~~~~~~i~~v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 405 (500)
T TIGR02633 327 IRNPAQAIRAGIAMVPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLS 405 (500)
T ss_pred CCCHHHHHhCCCEEcCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCC
Confidence 234899999952 222 24899999876432 11 1 11112234577888888742 467888999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
||||||++||++++.+|++|++|||+..||.. +++.+.++.. .+|++|||++++.. |++ |++++.+
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999993 3344444433 24699999999876 443 6666544
Q ss_pred C
Q 023126 251 K 251 (287)
Q Consensus 251 ~ 251 (287)
+
T Consensus 486 ~ 486 (500)
T TIGR02633 486 V 486 (500)
T ss_pred c
Confidence 3
No 262
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=5.2e-29 Score=250.19 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=150.3
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|+. +.++ +++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL-----~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~ 547 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLI-----ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIP 547 (710)
T ss_pred CeEEEEEEEEecCCCCCCcc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCC
Confidence 35889999999975 4566 888 9999999999999999999999999999999 9999999998653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSg 185 (287)
++.++|++|+++.+. -|++||+.++ .+. .+.+++.++++..+ .+.+. .-..|||
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~---gTi~eNi~l~-----~~~-~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSG 618 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFE---GTVRDNLTLW-----DPT-IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSG 618 (710)
T ss_pred HHHHHhheeEEecCChhhh---ccHHHHhhCC-----CCC-CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCH
Confidence 346999999987554 5999999753 121 23344444444333 22232 2347999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||||+++|+|+..+|+++++||++.-||++ +.+.+.+.-.+.|+|||+++.+.. |++ |++++.|+.+++
T Consensus 619 GQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~L 698 (710)
T TIGR03796 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL 698 (710)
T ss_pred HHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHH
Confidence 9999999999999999999999999999993 444454432345799999999877 655 899999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
.+
T Consensus 699 l~ 700 (710)
T TIGR03796 699 WA 700 (710)
T ss_pred HH
Confidence 65
No 263
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=4.5e-29 Score=206.71 Aligned_cols=197 Identities=16% Similarity=0.121 Sum_probs=157.6
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC-CCCC----
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~-~~~~---- 123 (287)
+++.+++++++|++..++ +++ +++.+||.-+|||||||||||++..|.|..+ |+.|+++++| .+..
T Consensus 4 ~iL~~~~vsVsF~GF~Al-----n~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e 75 (249)
T COG4674 4 IILYLDGVSVSFGGFKAL-----NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPE 75 (249)
T ss_pred ceEEEeceEEEEcceeee-----eeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCH
Confidence 678999999999999999 998 9999999999999999999999999999999 9999999988 3322
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhc--------CCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccC
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR--------GAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVG 188 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~--------~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~ 188 (287)
.-|+--||-+..+.. +||++|+....... ........+++.+.|..++ +..+.....||.|||
T Consensus 76 ~~IAr~GIGRKFQ~PtVfe~--ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 76 HRIARAGIGRKFQKPTVFEN--LTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred HHHHHhccCccccCCeehhh--ccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 126667888765554 89999998754322 1122345568888988877 455667779999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|++.|++.++..|++|++|+|+..+-+ ..-+.+..+... +++|.|||+++.. ++. |.+.+.|+.+++
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v 233 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEV 233 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHh
Confidence 999999999999999999999998865 333445555443 4689999999987 332 889999998887
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
-
T Consensus 234 ~ 234 (249)
T COG4674 234 Q 234 (249)
T ss_pred h
Confidence 4
No 264
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=4.8e-29 Score=241.16 Aligned_cols=193 Identities=11% Similarity=0.052 Sum_probs=147.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++ ..+ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 255 ~~~l~~~~l~~-----~~l-----~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 255 EVRLKVDNLSG-----PGV-----NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred CcEEEEeCccc-----CCc-----ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence 45788888874 234 788 9999999999999999999999999999999 9999999887432
Q ss_pred ----CceeEEEeCCCC--CCCcccCCccccHHHHHH-hc----C-CCCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ----~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~-~~----~-~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
+..++|++|++. .++ +.+|+.+|+.+... .. + .......+++.++++.++. ..++++.+|||||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe 400 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGN 400 (501)
T ss_pred HHHHHCCCEEecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHH
Confidence 134899999963 222 24799999876432 11 1 1111223457788888774 3567888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||+++|++++.+|++|++|||+..||. .+++.++++.. ..|++|||++++.. |++ |+++..|+++
T Consensus 401 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 480 (501)
T PRK10762 401 QQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTRE 480 (501)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999 44555555543 34799999999876 444 7777777766
Q ss_pred HH
Q 023126 254 DV 255 (287)
Q Consensus 254 ev 255 (287)
++
T Consensus 481 ~~ 482 (501)
T PRK10762 481 QA 482 (501)
T ss_pred cC
Confidence 65
No 265
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.7e-29 Score=241.05 Aligned_cols=200 Identities=15% Similarity=0.139 Sum_probs=151.8
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
.+-.++++|+++.|..|.-+ -+.+++ ++|+|||++||+||||+||||++++|..+|. |++|+|.++|.+.+
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~--~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~ 536 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDV--PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDIN 536 (716)
T ss_pred ccceEEEEEeeeecCCCCCc--hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcC
Confidence 44568888999999877432 122888 9999999999999999999999999999999 99999999998753
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHH------HHHHHHhccCCCC----CCCCCCcccC
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL------LNCLKNLRNQGSV----YAPSFDHGVG 188 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~------~~~l~~l~~~~~~----~~~~lSgG~~ 188 (287)
+.|+++.|+|..+. -|+.|||.++... ...++...+ .+.+..+.++-+. +-.+||||||
T Consensus 537 ~~~lr~~Ig~V~QEPvLFs---~sI~eNI~YG~~~---~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQK 610 (716)
T KOG0058|consen 537 HKYLRRKIGLVGQEPVLFS---GSIRENIAYGLDN---ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQK 610 (716)
T ss_pred HHHHHHHeeeeeccceeec---ccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHH
Confidence 45999999987554 5999999876441 111122211 1223333333333 3348999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChhh----HHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~~----~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||++||+||+.+|++||+||-+..||.+- .+.+.+..+ ++++|.|.+..+.. +++ |++++.|+-+|++
T Consensus 611 QRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 611 QRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHh
Confidence 99999999999999999999999999733 333333332 35789999999988 444 8999999988887
Q ss_pred HH
Q 023126 257 KW 258 (287)
Q Consensus 257 ~~ 258 (287)
..
T Consensus 691 ~~ 692 (716)
T KOG0058|consen 691 SK 692 (716)
T ss_pred hC
Confidence 54
No 266
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.6e-29 Score=220.21 Aligned_cols=191 Identities=13% Similarity=0.119 Sum_probs=139.0
Q ss_pred ccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
+++++++.|+ .+..+ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~~l-----~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~ 73 (236)
T cd03253 2 EFENVTFAYDPGRPVL-----KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSL 73 (236)
T ss_pred EEEEEEEEeCCCCcee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHH
Confidence 5678888885 45566 888 9999999999999999999999999999999 9999999987542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHH------HHHHHHHhc----cCCCCCCCCCCcccCCchh
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL------LLNCLKNLR----NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~------~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ 192 (287)
...++|++|++..+ + .|+.+|+.+.... .. ...... +.+.+..+. ...+.++..||+||+||++
T Consensus 74 ~~~i~~~~q~~~~~-~--~tv~~nl~~~~~~--~~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~ 147 (236)
T cd03253 74 RRAIGVVPQDTVLF-N--DTIGYNIRYGRPD--AT-DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVA 147 (236)
T ss_pred HhhEEEECCCChhh-c--chHHHHHhhcCCC--CC-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHH
Confidence 23489999996543 3 5888888654211 11 001111 112222221 1234457799999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++||+.+.+.. +++ |++++.|+.+++..
T Consensus 148 la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 148 IARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999984 3444444433 24689999999865 443 77777787766543
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=1.4e-28 Score=207.66 Aligned_cols=150 Identities=21% Similarity=0.224 Sum_probs=120.8
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++++.| ++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|++.++|.+.
T Consensus 2 ~~~l~~~~l~~~~----~l-----~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 2 EPVLEVRGLSVKG----AV-----RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSP 69 (182)
T ss_pred CcEEEEeccEEEe----ee-----cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCH
Confidence 4578899999987 45 888 9999999999999999999999999999999 9999999887442
Q ss_pred ----CceeEEEeCCCC-CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh
Q 023126 123 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 123 ----~~~i~~v~qd~~-~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
...++|++|++. ....+.+|+.+|+.+... ||+||+||+++|+++
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------cCHHHHHHHHHHHHH
Confidence 235899999852 112223688888765321 999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+|+++++|||+..+|. .+++.++++.. ..|++||+++++..
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999999999999999999 34444554432 24689999987765
No 268
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=1.8e-28 Score=216.43 Aligned_cols=195 Identities=16% Similarity=0.022 Sum_probs=138.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~---- 123 (287)
+++++++++.|+.+.++ +++ +.+++|++++|+|+||||||||+++|+|+ ++ |++|+|.++|....
T Consensus 1 ~i~~~nl~~~~~~~~~l-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 1 MLSIKDLHVSVEDKAIL-----RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSP 72 (248)
T ss_pred CeEEEEEEEEeCCeeee-----ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCH
Confidence 36788999999877777 888 99999999999999999999999999999 47 99999999886431
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHh---cCCCCC----chHHHHHHHHHHhcc---CCCCCCC-CCCccc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT----FNPLLLLNCLKNLRN---QGSVYAP-SFDHGV 187 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~---~~~~~~----~~~~~~~~~l~~l~~---~~~~~~~-~lSgG~ 187 (287)
..++|++|++..++. ++..++....... +..... ...+.+.+.++.++. ..+..+. .|||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~ 150 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPG--VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150 (248)
T ss_pred HHHhhcceEEEecCchhccc--hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence 348899998653332 3443333221111 100000 112344566666553 2344454 799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCCh
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKP 252 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~ 252 (287)
+||+++|++++.+|+++++|+|+..||.. +.+.+.++.+ .+|++|||++.+.. +++ |+++..|++
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~ 230 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCH
Confidence 99999999999999999999999999983 3333334432 24699999998764 232 677778877
Q ss_pred HHH
Q 023126 253 PDV 255 (287)
Q Consensus 253 ~ev 255 (287)
+.+
T Consensus 231 ~~~ 233 (248)
T PRK09580 231 TLV 233 (248)
T ss_pred HHH
Confidence 644
No 269
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=9.8e-29 Score=221.28 Aligned_cols=187 Identities=16% Similarity=0.145 Sum_probs=143.7
Q ss_pred cccCcccccc--cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQN--KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~--~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.| +...++ +++ +.|++||++||+|+||||||||+++|+|++ +++|+|+++|.+.
T Consensus 3 i~~~nls~~~~~~~~~~l-----~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~ 73 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVL-----ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQ 73 (275)
T ss_pred EEEEEEEEEeCCCCCcce-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHH
Confidence 5678899999 445566 888 999999999999999999999999999998 4579999988543
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCC-----------CCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAP-----------SFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~-----------~lSgG~ 187 (287)
+..++|++|++..+. .|+++|+... +. ...+++.+.++.++. ..+..+. .||+||
T Consensus 74 ~lr~~i~~v~q~~~lf~---~tv~~nl~~~----~~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~ 143 (275)
T cd03289 74 KWRKAFGVIPQKVFIFS---GTFRKNLDPY----GK---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGH 143 (275)
T ss_pred HHhhhEEEECCCcccch---hhHHHHhhhc----cC---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHH
Confidence 235899999976442 4888888531 11 123455666666652 2233333 499999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
+||+++|+|++.+|+++++|+++..+|.. +.+.+++... .+|++||+++.+.. |++ |++++.|+++++
T Consensus 144 ~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l 223 (275)
T cd03289 144 KQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKL 223 (275)
T ss_pred HHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHH
Confidence 99999999999999999999999999983 4445554432 24699999998876 544 899999999997
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 224 ~~ 225 (275)
T cd03289 224 LN 225 (275)
T ss_pred hh
Confidence 65
No 270
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=1.2e-28 Score=213.89 Aligned_cols=171 Identities=15% Similarity=0.161 Sum_probs=130.5
Q ss_pred cccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+. +.++ +++ +++++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 3 l~~~~l~~~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~ 74 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVL-----KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLH 74 (221)
T ss_pred EEEEEEEEecCCCCcccc-----cceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHH
Confidence 567888898864 3566 888 9999999999999999999999999999999 9999999887542
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~ 187 (287)
.+.++|++|++.. +. .|+.+|+.+.. . ...+++.+.++.++. ..+..+..||+||
T Consensus 75 ~~~~~i~~~~q~~~l-~~--~tv~enl~~~~----~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~ 144 (221)
T cd03244 75 DLRSRISIIPQDPVL-FS--GTIRSNLDPFG----E---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQ 144 (221)
T ss_pred HHhhhEEEECCCCcc-cc--chHHHHhCcCC----C---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHH
Confidence 2458999999763 33 58888875321 1 122333444443331 1235677999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+||+++|++++.+|+++++|+++..||.. +++.++++.. ..|++||+++.+..
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 99999999999999999999999999993 4444444432 24699999998865
No 271
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.95 E-value=7.5e-29 Score=211.38 Aligned_cols=153 Identities=16% Similarity=0.114 Sum_probs=122.8
Q ss_pred CccccCcccccccc------cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCC
Q 023126 50 PVFGKTRSLVQNKT------SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQV 120 (287)
Q Consensus 50 ~~~~~~~~~~~~~~------~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~ 120 (287)
+.++++++++.|+. +.++ +++ +++++|++++|+||||||||||+++|+|++ + |++|+|.++|.
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l-----~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~ 73 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLL-----KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGR 73 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccce-----ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCE
Confidence 34678899999975 4566 888 999999999999999999999999999999 9 99999998876
Q ss_pred CC-----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhh
Q 023126 121 KP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 121 ~~-----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
+. ...++|++|++..++ .+|+.+|+.+..... .||+||+||+++|+
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~--~~t~~~~i~~~~~~~---------------------------~LS~G~~qrv~lar 124 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHP--TLTVRETLMFAAKLR---------------------------GLSGGERKRVSIAL 124 (194)
T ss_pred eCchHhhhheEEEccCcccCCC--CCcHHHHHHHHHHhc---------------------------cCCHHHHHHHHHHH
Confidence 53 345899999865433 378888876532110 89999999999999
Q ss_pred hhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHH-HHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD-TAM 239 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~-~~~ 239 (287)
+++.+|+++++|+++..||.. +++.+.++.+ ..|++|||++ .+.
T Consensus 125 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 176 (194)
T cd03213 125 ELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIF 176 (194)
T ss_pred HHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHH
Confidence 999999999999999999993 4444444432 2469999997 444
No 272
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5e-29 Score=213.61 Aligned_cols=196 Identities=13% Similarity=0.055 Sum_probs=152.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC----
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---- 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~---- 121 (287)
...++++++++++.|+++.++ +++ ++|++||.++|+||||||||||+++++|.++ |++|.+.+.|..
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL-----~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~ 98 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKIL-----GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKG 98 (257)
T ss_pred CCcceEEecceEEEECCEeec-----cccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCC
Confidence 566889999999999999999 999 9999999999999999999999999999999 999987665532
Q ss_pred -----CCceeEEEeCCCCCCCcccCCccccHHHHHH-hcCC----CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCC
Q 023126 122 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA----PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 189 (287)
Q Consensus 122 -----~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~~~~----~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~q 189 (287)
.++.||+++-.-...+....++++.+..+.. ..|. ..+.+.+++..+++.++ ...+++..+||-||||
T Consensus 99 ~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 99 ETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred cchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence 2345888865533333334567776654321 1222 22345667788888888 4678899999999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC-----ceEEEeCHHHHHH---HHh----hccccCC
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ---RVL----KRHISTG 250 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~-----~i~vtHd~~~~~~---rv~----gr~v~~G 250 (287)
|+.||+|++.+|++||+||++-.+|- .+.+.+.++... .+||||..+++.. +++ |+++..|
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999997 344445555443 5799999999877 322 6666655
No 273
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.95 E-value=7.4e-29 Score=227.34 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=132.1
Q ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 86 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 86 IiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
|+||||||||||+++|+|+++ |++|+|.++|... .+.++|++|+...++ .+|+.+|+.+.....+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFP--HMTVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecCccccC--CCcHHHHHHHHHhhcCCCHH
Confidence 689999999999999999999 9999999988543 235899999965433 48999999987654443322
Q ss_pred chHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----Cce
Q 023126 160 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKW 229 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i 229 (287)
...+++.++++.++. ..++++.+|||||+||+++|++++.+|+++++||++..||. .+++.+.++.. ..|
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii 155 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV 155 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 234567778887773 45778889999999999999999999999999999999999 34455555432 246
Q ss_pred EEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 230 FIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 230 ~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|||++++.. |++ |+++..|+++++..
T Consensus 156 ivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 156 FVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999876 554 88888899888754
No 274
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=4.5e-29 Score=217.38 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=135.7
Q ss_pred CCCccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 48 AQPVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..++++++++++.|+.+ .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~ 79 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVL-----QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPIS 79 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchH
Confidence 34678899999999753 455 888 9999999999999999999999999999999 9999999988642
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC---CchHHHHHHHHHHh--c--cCCCCCCCCCCcccC
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNL--R--NQGSVYAPSFDHGVG 188 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~---~~~~~~~~~~l~~l--~--~~~~~~~~~lSgG~~ 188 (287)
...++|++|++.. +. .|+.+|+.+......... ......+.+.++.+ + ...+.++.+|||||+
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~ 156 (226)
T cd03248 80 QYEHKYLHSKVSLVGQEPVL-FA--RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK 156 (226)
T ss_pred HcCHHHHHhhEEEEecccHH-Hh--hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence 2358999999653 32 588888865322111000 00001134555555 3 234667889999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
||+++|++++.+|+++++|+|+..||.. +++.+.++.+ ..|++|||++++.
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 9999999999999999999999999983 3444444433 2469999999884
No 275
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=1.6e-28 Score=204.40 Aligned_cols=144 Identities=12% Similarity=0.013 Sum_probs=118.1
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
+++++++.|+. +..+ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.+++. ..++|++
T Consensus 2 ~~~~~~~~~~~~~~~l-----~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~ 70 (166)
T cd03223 2 ELENLSLATPDGRVLL-----KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLFLP 70 (166)
T ss_pred EEEEEEEEcCCCCeee-----ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEEEC
Confidence 46788888853 4556 888 9999999999999999999999999999999 99999998764 4599999
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcc
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~ 210 (287)
|++.. + ..|+.+|+.+. .+.+||+||+||+++|++++.+|+++++||++
T Consensus 71 q~~~~-~--~~tv~~nl~~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt 119 (166)
T cd03223 71 QRPYL-P--LGTLREQLIYP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT 119 (166)
T ss_pred CCCcc-c--cccHHHHhhcc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 99653 2 26888887542 35799999999999999999999999999999
Q ss_pred cCCChhhHHH----HHHhhcCceEEEeCHHHH
Q 023126 211 LFLDGGVWKD----VSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 211 lllDe~~~~~----l~~~~~~~i~vtHd~~~~ 238 (287)
..+|....+. +.++....|++|||++..
T Consensus 120 ~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~ 151 (166)
T cd03223 120 SALDEESEDRLYQLLKELGITVISVGHRPSLW 151 (166)
T ss_pred cccCHHHHHHHHHHHHHhCCEEEEEeCChhHH
Confidence 9999844443 333323357999998754
No 276
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=6.3e-29 Score=208.95 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=118.2
Q ss_pred ccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+.+ .++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~~~~~~~~~~~~~l-----~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (178)
T cd03247 2 SINNVSFSYPEQEQQVL-----KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKAL 73 (178)
T ss_pred EEEEEEEEeCCCCccce-----EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHH
Confidence 567888888764 456 888 9999999999999999999999999999999 9999999888542
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
...++|++|++..+ + .|+++|+ +..||+||+||+++|++++.+|+
T Consensus 74 ~~~i~~~~q~~~~~-~--~tv~~~i--------------------------------~~~LS~G~~qrv~laral~~~p~ 118 (178)
T cd03247 74 SSLISVLNQRPYLF-D--TTLRNNL--------------------------------GRRFSGGERQRLALARILLQDAP 118 (178)
T ss_pred HhhEEEEccCCeee-c--ccHHHhh--------------------------------cccCCHHHHHHHHHHHHHhcCCC
Confidence 24589999986432 2 4666654 67899999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
++++|+++..||. .+++.+.++.. ..|++||+++++..
T Consensus 119 ~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 119 IVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh
Confidence 9999999999998 34455544432 24699999998753
No 277
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-28 Score=206.09 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=118.9
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------Cc
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD 124 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------~~ 124 (287)
+++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|... ..
T Consensus 2 ~~~~l~~~~~~~~~l-----~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (173)
T cd03230 2 EVRNLSKRYGKKTAL-----DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR 73 (173)
T ss_pred EEEEEEEEECCeeee-----eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence 567888888766666 888 9999999999999999999999999999999 9999998887532 24
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
.++|++|++..++ .+|+.+|+. ||+||+||+++|++++.+|+++
T Consensus 74 ~i~~~~q~~~~~~--~~tv~~~~~----------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 74 RIGYLPEEPSLYE--NLTVRENLK----------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred cEEEEecCCcccc--CCcHHHHhh----------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 5899999965433 367776652 9999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|||+..+|. .+++.++++.+ ..+++|||.+++..
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999998 44555555543 24689999998764
No 278
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.6e-29 Score=240.18 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=146.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++.. .++ +++ +.+++|+++||+||||||||||+|+|+|+++ |++|+|.++|...
T Consensus 255 ~~~l~~~~~~~~----~~l-----~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 255 EVRLRLDGLKGP----GLR-----EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred CcEEEEeccccC----Ccc-----cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCH
Confidence 346777777632 244 888 9999999999999999999999999999999 9999999887532
Q ss_pred ----CceeEEEeCCCC--CCCcccCCccccHHHHHHhcCC------CCCchHHHHHHHHHHhcc---CCCCCCCCCCccc
Q 023126 123 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHARRGA------PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGV 187 (287)
Q Consensus 123 ----~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~~~~~------~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~ 187 (287)
+..++|++|++. .++ +.+|+.+|+.+....... ......+.+.++++.++. ..++++.+|||||
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 401 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGII-PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGN 401 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCc-CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHH
Confidence 135899999853 222 247999998764321110 111223456778888774 3577888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||+++|++++.+|++|++|||+..||.. +++.+.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999993 4444444433 34699999999887 444 7888888777
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
+...
T Consensus 482 ~~~~ 485 (501)
T PRK11288 482 QATE 485 (501)
T ss_pred cCCH
Confidence 6543
No 279
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.9e-28 Score=229.76 Aligned_cols=189 Identities=13% Similarity=0.156 Sum_probs=151.6
Q ss_pred ccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
..+++++.|.+. ..+ .++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 322 ~~~~l~~~y~~g~~~l-----~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 322 SLENLSFRYPDGKPAL-----SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred eecceEEecCCCCccc-----CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence 345999999876 667 888 9999999999999999999999999999999 9999999998754
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--------cCCCCCCC----CCCcccCCc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--------NQGSVYAP----SFDHGVGDP 190 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--------~~~~~~~~----~lSgG~~qr 190 (287)
++.+++++|+++.+. -|++||+.++. +. ...+.+.+++++.+ .+.+..+. .|||||+||
T Consensus 394 ~k~i~~v~Q~p~lf~---gTireNi~l~~-----~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR 464 (559)
T COG4988 394 RKQISWVSQNPYLFA---GTIRENILLAR-----PD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR 464 (559)
T ss_pred HhHeeeeCCCCcccc---ccHHHHhhccC-----Cc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence 245999999988665 48999997642 21 22344555555544 23344444 599999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH--HHh----hccccCCChHHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~ 258 (287)
+++|+|+..++.++++||++.-+|- .+.+.+.++.+. ++++||++..+.. +++ ||+++.|+.+++...
T Consensus 465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999997 345555666554 4699999999988 555 899999999998543
No 280
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=199.92 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=142.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
.++++++...-+++..+ +++ +.+.+||.++|.||||||||||+|+++.+.. |++|.+.+.|.+.
T Consensus 3 lle~kq~~y~a~~a~il-----~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea 74 (223)
T COG4619 3 LLELKQVGYLAGDAKIL-----NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEA 74 (223)
T ss_pred chHHHHHHhhcCCCeee-----cceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHH
Confidence 34555555556677777 898 9999999999999999999999999999999 9999999998764
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
+..++|+-|.+..+. -||++|+.|....+. ...+...+...|.+++. ..++.+.+|||||+||+++++.|.
T Consensus 75 ~Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 75 YRQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred HHHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence 245899999876554 499999998755442 23477788888888883 456788899999999999999999
Q ss_pred cCccEEEEcCcccCCChhhHHHHH----Hhhc----CceEEEeCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGGVWKDVS----SMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~~~~~l~----~~~~----~~i~vtHd~~~~~~ 240 (287)
.-|++|++|+++..|||.--+.+. ..+. ..++||||.+.+.+
T Consensus 150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~r 199 (223)
T COG4619 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIR 199 (223)
T ss_pred cCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhh
Confidence 999999999999999994333333 3331 24699999999776
No 281
>PLN03211 ABC transporter G-25; Provisional
Probab=99.95 E-value=3.5e-28 Score=241.01 Aligned_cols=194 Identities=18% Similarity=0.168 Sum_probs=151.3
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC--CcccccCCCCC----Ccee
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVKP----PDVA 126 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~--~G~i~~~~~~~----~~~i 126 (287)
.+++++.|+++.++ +++ +.+++||++||+||||||||||+++|+|.++ |+ +|+|.++|... .+.+
T Consensus 71 ~~~l~~~~~~~~iL-----~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i 142 (659)
T PLN03211 71 ISDETRQIQERTIL-----NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT 142 (659)
T ss_pred cccccccCCCCeee-----eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence 45678889888777 998 9999999999999999999999999999998 85 89999988642 3458
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCC----CchHHHHHHHHHHhccCC-------CCCCCCCCcccCCchhhhh
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~-------~~~~~~lSgG~~qrv~ia~ 195 (287)
+|++|++...+ .+|++||+.+..... .+. .+..+++.++++.++... +.....||||||||+++|+
T Consensus 143 ~yv~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 143 GFVTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred EEECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 99999976544 389999998865432 221 122345677888877422 3456789999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHH-HHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT-AMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~-~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+++.+|+++++|||+..||. .+.+.++++.+ .+|+++|+++. +.+ +++ |+++..|+++++...
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~ 297 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAY 297 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHH
Confidence 99999999999999999998 44555555442 24689999973 443 544 888899998887653
No 282
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-28 Score=207.08 Aligned_cols=146 Identities=21% Similarity=0.178 Sum_probs=118.8
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---------
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------- 122 (287)
+++++++.|+.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~l-----~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~ 73 (178)
T cd03229 2 ELKNVSKRYGQKTVL-----NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP 73 (178)
T ss_pred EEEEEEEEECCeEEE-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence 567888999877667 888 9999999999999999999999999999999 9999998877432
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
...++|++|++..++ .+|+.+|+.+. ||+||+||+++|++++.+|
T Consensus 74 ~~~~i~~~~q~~~~~~--~~t~~~~l~~~--------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 74 LRRRIGMVFQDFALFP--HLTVLENIALG--------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred HhhcEEEEecCCccCC--CCCHHHheeec--------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 235899999865433 26776665431 9999999999999999999
Q ss_pred cEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++++|||+..+|.. +++.+.++.+ ..+++|||++++..
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999999999999983 4444444433 23689999998753
No 283
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=3.2e-28 Score=239.66 Aligned_cols=190 Identities=13% Similarity=0.106 Sum_probs=145.9
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
-++++++++.| ++..++ +++ +++++|+.+||+|+||||||||+++|+|++ |++|+|.++|.+..
T Consensus 349 ~i~~~~vsf~~~~~~~vL-----~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLA-----GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPE 419 (588)
T ss_pred eEEEEeeEEeccCCCeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHH
Confidence 47888998544 455566 888 999999999999999999999999999988 77999999986542
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCCCC----CCCCCccc
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGV 187 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~----~~~lSgG~ 187 (287)
+.++|++|+++.+. -|++||+.++. +. ...+++.++++ .+.++.+.. -..|||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~---~TI~eNI~~g~-----~~-~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQ 490 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPH---GTLRDNVLLGN-----PD-ASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQ 490 (588)
T ss_pred HHHhheEEecCCCcCCC---cCHHHHhhcCC-----CC-CCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHH
Confidence 45999999987554 59999998642 21 22333333333 332333433 34799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||++||+|++.+|+++++||++.-+|.+ +.+.+.++.+ +.|+|||+++.+.. +++ |++++.|+.+++
T Consensus 491 rQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL 570 (588)
T PRK11174 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAEL 570 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHH
Confidence 99999999999999999999999999983 4444555433 35799999998877 554 899999999988
Q ss_pred HHH
Q 023126 256 AKW 258 (287)
Q Consensus 256 ~~~ 258 (287)
++.
T Consensus 571 ~~~ 573 (588)
T PRK11174 571 SQA 573 (588)
T ss_pred Hhc
Confidence 653
No 284
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=207.32 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=150.7
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------- 123 (287)
+++.++++-|...+..=..+.+++ +.+.+|+++-|+|.||||||||++.|+|.+. |++|+|.++|.+..
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~R 78 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAKR 78 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHHH
Confidence 456666666665544444444788 9999999999999999999999999999999 99999999987642
Q ss_pred -ceeEEEeCCCCCCCcccCCccccHHHHHHh---cCCCCCc---hHHHHHHHHHHhc----cCCCCCCCCCCcccCCchh
Q 023126 124 -DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF---NPLLLLNCLKNLR----NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 124 -~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~---~~~~~~~---~~~~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ 192 (287)
..++-|+||+..-..+.+|+.||+...... ++...+. ..+.+.+.+..++ ...+.++.-|||||||-++
T Consensus 79 A~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQals 158 (263)
T COG1101 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158 (263)
T ss_pred hhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHH
Confidence 236778999987777789999999886543 2332221 2334455566655 3456788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHHHHhhc--------CceEEEeCHHHHHH---HHh----hcccc
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~--------~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
+.+|...+|++|++||-+..||+...+.+.++.. ..++|||+|+.+.. |.+ |+++-
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 9999999999999999999999955555544433 24699999999988 666 78774
No 285
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=3.2e-28 Score=244.21 Aligned_cols=192 Identities=15% Similarity=0.106 Sum_probs=150.3
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
..++++++++.|.+ +.++ +++ +++++|++++|+||||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL-----~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~ 548 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVL-----KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQY 548 (711)
T ss_pred CeEEEEEEEEECCCCCCCccc-----cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhc
Confidence 45889999999974 3456 888 9999999999999999999999999999999 9999999998653
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lS 184 (287)
++.++|++|+++.+. .|++||+.++. +.. ..+++.++++..+ .+.+. .-..||
T Consensus 549 ~~~~lr~~i~~v~Q~~~lF~---gTIreNI~~g~-----~~~-~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 619 (711)
T TIGR00958 549 DHHYLHRQVALVGQEPVLFS---GSVRENIAYGL-----TDT-PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLS 619 (711)
T ss_pred CHHHHHhhceEEecCccccc---cCHHHHHhcCC-----CCC-CHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCC
Confidence 245999999987554 59999997642 211 2334444444332 22333 234799
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh---c-CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~---~-~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||||+++|+++..+++++++||++.-+|.+..+.+.+.. + ..|+|||+++.+.. +++ |++++.|+.++
T Consensus 620 GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~e 699 (711)
T TIGR00958 620 GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQ 699 (711)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHH
Confidence 99999999999999999999999999999996555555422 1 34699999998876 555 89999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+++.
T Consensus 700 L~~~ 703 (711)
T TIGR00958 700 LMED 703 (711)
T ss_pred HHhC
Confidence 8653
No 286
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=3.1e-28 Score=238.74 Aligned_cols=183 Identities=13% Similarity=0.083 Sum_probs=143.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++.. + +++ +.+.+||++||+||||||||||+++|+|+++ |++|+|.++ ..+
T Consensus 337 ~~~~l~~~~ls~~~~~~~-l-----~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i 402 (590)
T PRK13409 337 RETLVEYPDLTKKLGDFS-L-----EVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKI 402 (590)
T ss_pred CceEEEEcceEEEECCEE-E-----EecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeE
Confidence 456899999999997642 4 666 9999999999999999999999999999999 999999875 248
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|+.... ..+|+.+++.+....+. ......++++.++ ...++++.+|||||+||+++|++++.+|+++
T Consensus 403 ~y~~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~ll 475 (590)
T PRK13409 403 SYKPQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLY 475 (590)
T ss_pred EEecccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999986533 34899999876532221 1224567777776 3457889999999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh---hccccCCC
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL---KRHISTGK 251 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~---gr~v~~G~ 251 (287)
++|||+..||. .+++.|+++.. ..+++|||++++.. |++ |+....|.
T Consensus 476 LLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~~~~~~g~ 536 (590)
T PRK13409 476 LLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEGEPGKHGH 536 (590)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCcceeeee
Confidence 99999999998 44555555532 24699999999876 444 55544443
No 287
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.95 E-value=2.8e-28 Score=204.13 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=114.8
Q ss_pred ccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+. ..++ +++ +.+.+|++++|+||||||||||+++|+|+++ |++|+|.++|...
T Consensus 2 ~~~~l~~~~~~~~~~~l-----~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (173)
T cd03246 2 EVENVSFRYPGAEPPVL-----RNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNE 73 (173)
T ss_pred EEEEEEEEcCCCCCcce-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHH
Confidence 56788888865 3456 888 9999999999999999999999999999999 9999999887532
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
...++|++|++.. +. .|+.+|+ ||+||+||+++|++++.++
T Consensus 74 ~~~~i~~~~q~~~~-~~--~tv~~~l-----------------------------------LS~G~~qrv~la~al~~~p 115 (173)
T cd03246 74 LGDHVGYLPQDDEL-FS--GSIAENI-----------------------------------LSGGQRQRLGLARALYGNP 115 (173)
T ss_pred HHhheEEECCCCcc-cc--CcHHHHC-----------------------------------cCHHHHHHHHHHHHHhcCC
Confidence 2358999998643 22 3666665 9999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
+++++|+|+..+|. .+++.++++.+ ..+++|||++.+
T Consensus 116 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 116 RILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL 159 (173)
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999998 34445544433 246999999876
No 288
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=9e-29 Score=250.26 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=152.5
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
.+--++++|+.++|..|.-+ .+.+++ +.|++|+.++|+|||||||||++++|.+++. |++|+|.++|.+.+
T Consensus 347 ~~g~ief~nV~FsYPsRpdv--~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~ 421 (1228)
T KOG0055|consen 347 IKGEIEFRNVCFSYPSRPDV--KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLN 421 (1228)
T ss_pred cccceEEEEEEecCCCCCcc--hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcc
Confidence 34568899999999988622 334888 9999999999999999999999999999999 99999999998753
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHH---------HHhccCCC----CCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNLRNQGS----VYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l---------~~l~~~~~----~~~~~lSg 185 (287)
..+|+|+|+|..+ . .|++||+.++. +.+ ..+.+.++. ..+-.+.+ ..-.+|||
T Consensus 422 ~~~lr~~iglV~QePvlF-~--~tI~eNI~~G~-----~da-t~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSG 492 (1228)
T KOG0055|consen 422 LKWLRSQIGLVSQEPVLF-A--TTIRENIRYGK-----PDA-TREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSG 492 (1228)
T ss_pred hHHHHhhcCeeeechhhh-c--ccHHHHHhcCC-----Ccc-cHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCCh
Confidence 3599999998543 3 69999998653 221 122222222 22222222 33447999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc------CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~------~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||++||+|++.+|++|++||.+..||.+--+.+++.++ ++|+|+|.+.++.. +++ |++++.|+.+
T Consensus 493 GQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ 572 (1228)
T KOG0055|consen 493 GQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHD 572 (1228)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999854444444433 36899999999988 444 9999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|++..
T Consensus 573 ELi~~ 577 (1228)
T KOG0055|consen 573 ELIAL 577 (1228)
T ss_pred HHHhc
Confidence 98864
No 289
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=4.1e-28 Score=240.57 Aligned_cols=180 Identities=15% Similarity=0.134 Sum_probs=142.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
.+.++++++++++.|+++.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.++.. ..
T Consensus 315 ~~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ 383 (635)
T PRK11147 315 SGKIVFEMENVNYQIDGKQLV-----KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LE 383 (635)
T ss_pred CCCceEEEeeeEEEECCeEEE-----cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cE
Confidence 467799999999999987777 888 9999999999999999999999999999999 99999988432 24
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++|+...++ +.+|+.+|+.+....... ......+.++++.++. ..++++.+||||||||+++|++++.+|.
T Consensus 384 i~y~~q~~~~l~-~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~ 460 (635)
T PRK11147 384 VAYFDQHRAELD-PEKTVMDNLAEGKQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSN 460 (635)
T ss_pred EEEEeCcccccC-CCCCHHHHHHhhcccccc--cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCC
Confidence 899999753233 347999998764321111 1123456777777763 3467888999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++|+|+..||....+.+.++.. .+|+||||.+++..
T Consensus 461 lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~ 502 (635)
T PRK11147 461 LLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDN 502 (635)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 999999999999954444444332 35799999998865
No 290
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=2.3e-28 Score=245.40 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=148.5
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.+++++++++|+. +.++ +++ +++++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 473 ~I~~~~vsf~y~~~~~iL-----~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~ 544 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNIL-----SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRH 544 (708)
T ss_pred cEEEEEEEEEcCCCCcce-----eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHH
Confidence 5788999999974 4556 888 9999999999999999999999999999999 9999999998653
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~ 187 (287)
++.++|++|+++.+. -|++||+.++.. + ..+.+++.++++..+ .+.+. ....|||||
T Consensus 545 ~lr~~i~~v~Q~~~lf~---gTI~eNi~l~~~----~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQ 616 (708)
T TIGR01193 545 TLRQFINYLPQEPYIFS---GSILENLLLGAK----E-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616 (708)
T ss_pred HHHHheEEEecCceehh---HHHHHHHhccCC----C-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHH
Confidence 346999999987554 499999976421 1 122333444443322 22333 334799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc-CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~-~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
|||+++|+|+..+|+++++||++.-+|++ +.+.+.++.+ +.|+|||+++.+.. +++ |++++.|+.++++
T Consensus 617 rQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred HHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999983 4444554322 34799999998866 555 8999999998876
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 697 ~ 697 (708)
T TIGR01193 697 D 697 (708)
T ss_pred h
Confidence 4
No 291
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=2.7e-28 Score=207.63 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=120.9
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCCCC-
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~~~- 122 (287)
.++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+++|+|++ + |++|++.+++.+.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~~~G~i~~~g~~~~ 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLL-----NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG---VITGEILINGRPLD 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeE-----EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CcceEEEECCEehH
Confidence 4678889999974 4455 888 999999999999999999999999999975 5 8999999887542
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
...++|++|++..++ .+|+.+|+.+.... . .|||||+||+++|++++.
T Consensus 75 ~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~----------------~-----------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 75 KNFQRSTGYVEQQDVHSP--NLTVREALRFSALL----------------R-----------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred HHhhhceEEecccCcccc--CCcHHHHHHHHHHH----------------h-----------cCCHHHhHHHHHHHHHhc
Confidence 345899999865443 37899988754210 0 899999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
+|+++++|||+..+|. .+++.++++.+ ..|++||+++.
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~ 170 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSA 170 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChH
Confidence 9999999999999999 44455555432 24699999984
No 292
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=4.1e-28 Score=239.09 Aligned_cols=189 Identities=14% Similarity=0.153 Sum_probs=149.2
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
-++++++++.|+. ..++ +++ +++++|+.+||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~i~~~~v~f~y~~~~~il-----~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~ 411 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVL-----QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHS 411 (592)
T ss_pred eEEEEEEEEEeCCCCcee-----eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHH
Confidence 4788999999864 3455 888 9999999999999999999999999999999 9999999998653
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG~ 187 (287)
++.++|++|+++.+. -|+++|+.++. ..+.+++.++++.++ .+.+. .-..|||||
T Consensus 412 ~l~~~i~~v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGq 481 (592)
T PRK10790 412 VLRQGVAMVQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQ 481 (592)
T ss_pred HHHhheEEEccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 355999999987554 49999998742 122344445544443 22333 234799999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
+||+++|+|+..+++++++||++.-+|++ +.+.+.++.. .+|++||+++.... +++ |++++.|+.+++
T Consensus 482 rQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L 561 (592)
T PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQL 561 (592)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999993 4444555432 35799999988877 555 899999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
++
T Consensus 562 ~~ 563 (592)
T PRK10790 562 LA 563 (592)
T ss_pred Hh
Confidence 64
No 293
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.95 E-value=3e-28 Score=244.10 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=149.9
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|+. +.++ +++ +++++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 462 ~~I~~~~vsf~Y~~~~~~vL-----~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~ 533 (694)
T TIGR03375 462 GEIEFRNVSFAYPGQETPAL-----DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQID 533 (694)
T ss_pred ceEEEEEEEEEeCCCCccce-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCC
Confidence 35889999999964 3456 888 9999999999999999999999999999999 9999999998653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSg 185 (287)
++.++|++|+++.+. -|++||+.++. +. .+.+++.++++..+ .+.+. .-..|||
T Consensus 534 ~~~lr~~i~~v~Q~~~lf~---~TI~eNi~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 534 PADLRRNIGYVPQDPRLFY---GTLRDNIALGA-----PY-ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred HHHHHhccEEECCChhhhh---hhHHHHHhCCC-----CC-CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 346999999987554 49999997542 21 23344444444332 22232 3347999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|+..+|+++++||++.-+|++ +.+.+.++.+ +.|+|||+++.+.. +++ |++++.|+.+
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 9999999999999999999999999999994 4444555432 35799999998866 555 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
++++.
T Consensus 685 eLl~~ 689 (694)
T TIGR03375 685 QVLEA 689 (694)
T ss_pred HHHHH
Confidence 87654
No 294
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.95 E-value=1.6e-28 Score=240.81 Aligned_cols=190 Identities=15% Similarity=0.174 Sum_probs=150.3
Q ss_pred cccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 52 FGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 52 ~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
++++++++.|+ +..++ +++ +.+++||.+||+||||||||||++.|.++++ |++|+|.++|.+.+
T Consensus 329 I~f~~vsf~y~~~~~vl-----~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 329 IEFENVSFSYPGKKPVL-----KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred EEEEEEEEEcCCCCccc-----cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence 88999999999 57788 888 9999999999999999999999999999999 99999999886543
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---------HHHhccCCCCCC----CCCCcccC
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGSVYA----PSFDHGVG 188 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~----~~lSgG~~ 188 (287)
+.+++++||++.+. -|+++|+.++... . ..+++.++ +..+.++.+..+ ..||||||
T Consensus 401 lr~~I~~V~Qd~~LF~---~TI~~NI~~g~~~-----a-t~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr 471 (567)
T COG1132 401 LRKRIGIVSQDPLLFS---GTIRENIALGRPD-----A-TDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR 471 (567)
T ss_pred HHHhccEEcccceeec---ccHHHHHhcCCCC-----C-CHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence 45999999977554 4899999875322 1 12222222 223322344444 38999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
||++||+|+..+|+++++||.+.-+|.+ +++.+.++.+ ++++|+|.+..+.. +++ |++++.|+.+|++
T Consensus 472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999984 3444443332 45789999999887 555 8999999999987
Q ss_pred HH
Q 023126 257 KW 258 (287)
Q Consensus 257 ~~ 258 (287)
..
T Consensus 552 ~~ 553 (567)
T COG1132 552 AK 553 (567)
T ss_pred Hc
Confidence 64
No 295
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.95 E-value=3e-28 Score=236.02 Aligned_cols=195 Identities=21% Similarity=0.169 Sum_probs=145.8
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++.. .+ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.+++...
T Consensus 265 ~~~~l~~~~l~~~-----~l-----~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~ 331 (510)
T PRK15439 265 GAPVLTVEDLTGE-----GF-----RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALS 331 (510)
T ss_pred CCceEEEeCCCCC-----Cc-----cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCC
Confidence 3457888888731 34 788 9999999999999999999999999999999 9999999887532
Q ss_pred -----CceeEEEeCCCC--CCCcccCCccccHHHHHHh-cCC--CCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCC
Q 023126 123 -----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -----~~~i~~v~qd~~--~~~~~~ltv~e~i~~~~~~-~~~--~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~q 189 (287)
+..++|++|+.. .++ +.+|+.+|+...... ... ......+.+.++++.++. ..++++.+|||||||
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 332 TAQRLARGLVYLPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred HHHHHhCCcEECCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHH
Confidence 134899999842 222 247888887542111 111 111223456778888774 346788899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDV 255 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev 255 (287)
|++||++++.+|++|++|||+..||. .+++.+.++.+ ..|++|||++++.. |++ |+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999999999999 34445554433 24799999999886 444 788877777664
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 4
No 296
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=5.6e-28 Score=237.26 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=150.1
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..+++++++++|++ +.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 337 ~~i~~~~v~f~y~~~~~~il-----~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~ 408 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVL-----KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYS 408 (574)
T ss_pred CeEEEEEEEEECCCCCCcce-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCC
Confidence 45889999999964 3456 888 9999999999999999999999999999999 99999999986532
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--------CCCC----CCCCCCcc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSV----YAPSFDHG 186 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~----~~~~lSgG 186 (287)
+.++|++|+++.+. -|++||+.++. + ....+.+.++++..+. +.+. ....||||
T Consensus 409 ~~~~r~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgG 479 (574)
T PRK11160 409 EAALRQAISVVSQRVHLFS---ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGG 479 (574)
T ss_pred HHHHHhheeEEcccchhhc---ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHH
Confidence 35999999976543 48999987642 2 1234455556655542 1122 34479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|++++.+|+++++||++..+|++ +.+.+.+..+ ..|++||+++.+.. +++ |++++.|+.+|
T Consensus 480 qrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~ 559 (574)
T PRK11160 480 EQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQE 559 (574)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHH
Confidence 999999999999999999999999999994 4444444432 34699999998876 554 89999999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+++
T Consensus 560 l~~ 562 (574)
T PRK11160 560 LLA 562 (574)
T ss_pred HHh
Confidence 764
No 297
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=3.9e-28 Score=234.23 Aligned_cols=185 Identities=15% Similarity=0.013 Sum_probs=138.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP--- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~~--- 122 (287)
..++++++++++.|+++.++ +++ +.+++|+++||+||||||||||+++|+|+++ | ++|+|.++|...
T Consensus 257 ~~~~l~~~~l~~~~~~~~il-----~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 257 NEPRIVLNNGVVSYNDRPIL-----HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSG 328 (490)
T ss_pred CCceEEEeceEEEECCeeEE-----eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCC
Confidence 45789999999999887777 888 9999999999999999999999999999875 5 699998887432
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~q 189 (287)
+..++|++|+....+....++.+++...... +........+++.++++.++. ..+.++.+|||||||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence 2348999998543222123554444322111 111111223466788888873 346778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---C-ceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---E-KWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~-~i~vtHd~~~~~~ 240 (287)
|+++|++++.+|++|++|||+..||. .+++.|.++.. . +|++|||++++..
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~ 467 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPA 467 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhh
Confidence 99999999999999999999999999 34444555432 2 4699999998864
No 298
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=1.9e-27 Score=204.13 Aligned_cols=166 Identities=11% Similarity=0.112 Sum_probs=126.2
Q ss_pred cccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 52 FGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 52 ~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
++++++++.|+.+ .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++| .
T Consensus 1 l~~~~l~~~~~~~~~~~~~il-----~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTL-----KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----S 67 (204)
T ss_pred CEEeEEEEecCCCCcccccee-----eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----E
Confidence 3578889999764 466 888 9999999999999999999999999999999 9999999887 5
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHH------HHhc-------cCCCCCCCCCCcccCCchh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KNLR-------NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l------~~l~-------~~~~~~~~~lSgG~~qrv~ 192 (287)
++|++|++..+ + .|+.+|+.+.... . .+...+.+ +.+. ...+..+..||+||+||++
T Consensus 68 i~~~~q~~~l~-~--~t~~enl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~ 137 (204)
T cd03250 68 IAYVSQEPWIQ-N--GTIRENILFGKPF---D----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRIS 137 (204)
T ss_pred EEEEecCchhc-c--CcHHHHhccCCCc---C----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHH
Confidence 99999997643 2 6999998763211 1 11111222 1221 1134567799999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHH-----HHhhc---CceEEEeCHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDV-----SSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l-----~~~~~---~~i~vtHd~~~~~~ 240 (287)
+|++++.+|+++++|+++..||....+.+ .+..+ .+|++||+++.+..
T Consensus 138 laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 138 LARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 99999999999999999999998443333 22322 24689999988764
No 299
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.95 E-value=8.3e-28 Score=236.74 Aligned_cols=191 Identities=16% Similarity=0.147 Sum_probs=147.3
Q ss_pred CccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
..+++++++++|+. ..++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 333 ~~I~~~~vsf~y~~~~~iL-----~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~ 404 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGV-----EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTR 404 (588)
T ss_pred CeEEEEEEEEEeCCCCcee-----cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCH
Confidence 35889999999965 4456 888 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG 186 (287)
++.++|++|+++.+. -|+++|+.++ .+. ...+++.+.++.++ .+.+. ....||||
T Consensus 405 ~~~r~~i~~v~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 475 (588)
T PRK13657 405 ASLRRNIAVVFQDAGLFN---RSIEDNIRVG-----RPD-ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGG 475 (588)
T ss_pred HHHHhheEEEecCccccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHH
Confidence 246999999977553 5999999753 121 12233333333322 22232 23479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+++..+++++++||++.-+|+ .+.+.+.+..+ ..|+|||+++.+.. +++ |++++.|+.++
T Consensus 476 q~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~ 555 (588)
T PRK13657 476 ERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDE 555 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999 34455555532 35799999998766 554 88899999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
++.
T Consensus 556 l~~ 558 (588)
T PRK13657 556 LVA 558 (588)
T ss_pred HHH
Confidence 753
No 300
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=6.1e-28 Score=201.71 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=115.3
Q ss_pred ccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 53 GKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++.|+.. .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|++.++|...
T Consensus 2 ~~~~l~~~~~~~~~~~l-----~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~ 73 (171)
T cd03228 2 EFKNVSFSYPGRPKPVL-----KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLES 73 (171)
T ss_pred EEEEEEEEcCCCCcccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHH
Confidence 567888888765 566 888 9999999999999999999999999999999 9999999888542
Q ss_pred -CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 123 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 123 -~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
...++|++|++. ++. .|+.+|+ ||+||+||+++|++++.+|
T Consensus 74 ~~~~i~~~~~~~~-~~~--~t~~e~l-----------------------------------LS~G~~~rl~la~al~~~p 115 (171)
T cd03228 74 LRKNIAYVPQDPF-LFS--GTIRENI-----------------------------------LSGGQRQRIAIARALLRDP 115 (171)
T ss_pred HHhhEEEEcCCch-hcc--chHHHHh-----------------------------------hCHHHHHHHHHHHHHhcCC
Confidence 234889998864 222 3665554 9999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+++++|||+..+|. .+++.+.++.. ..+++|||++.+..
T Consensus 116 ~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 116 PILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 99999999999998 34444444433 24689999998753
No 301
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.95 E-value=4.3e-28 Score=207.67 Aligned_cols=165 Identities=16% Similarity=0.072 Sum_probs=126.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCC------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+ ++ |++|+|.++|.+.
T Consensus 1 l~~~~l~~~~~~~~~l-----~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVGGKEIL-----KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeCCEEee-----eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHH
Confidence 3567889999876666 888 99999999999999999999999999999 47 9999999887532
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
...++|++|++..++ .+++.+++ ......||+||+||+++|++++.
T Consensus 73 ~~~~~~i~~v~q~~~~~~--~~~~~~~l-----------------------------~~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 73 ERARLGIFLAFQYPPEIP--GVKNADFL-----------------------------RYVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred HHhhCcEEEeecChhhcc--CccHHHHH-----------------------------hhccccCCHHHHHHHHHHHHHhc
Confidence 123889999864332 23433322 11235899999999999999999
Q ss_pred CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCChHHHH
Q 023126 200 QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 200 ~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ev~ 256 (287)
+|+++++|+++..+|. .+++.+.++.+ ..|++||+++.+.. |++ |++++.| +.++.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999998 45555555543 24699999998762 333 7777777 44443
No 302
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.95 E-value=9.2e-28 Score=213.28 Aligned_cols=191 Identities=14% Similarity=0.112 Sum_probs=140.3
Q ss_pred CCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 49 QPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
...++++++++.|+. ..++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il-----~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~ 88 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVL-----KHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKL 88 (257)
T ss_pred CceEEEEEEEEEeCCCCCcce-----eEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhC
Confidence 346788899999976 3555 888 9999999999999999999999999999999 9999999887542
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---------HHHh--c--cCCCCCCCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNL--R--NQGSVYAPSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---------l~~l--~--~~~~~~~~~lS 184 (287)
...++|++|++.. +. .|+.+|+... .......+.+. ++.+ + ...+.....||
T Consensus 89 ~~~~~~~~i~~v~q~~~l-~~--~tv~~nl~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS 158 (257)
T cd03288 89 PLHTLRSRLSIILQDPIL-FS--GSIRFNLDPE-------CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFS 158 (257)
T ss_pred CHHHHhhhEEEECCCCcc-cc--cHHHHhcCcC-------CCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCC
Confidence 2458999999743 32 4777766421 00111122222 2222 1 11234566999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhH----HHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~----~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
+||+||+++|++++.+|+++++|+++..+|.... +.+.++.. ..|++||+++.+.. |++ |++++.|++
T Consensus 159 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~ 238 (257)
T cd03288 159 VGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTP 238 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999998433 33333322 23689999999876 444 788888888
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 239 ~~~~~ 243 (257)
T cd03288 239 ENLLA 243 (257)
T ss_pred HHHHh
Confidence 77644
No 303
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=2.6e-27 Score=209.04 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=118.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+++|++++|+||||||||||+++|+|+++ |++|+|.+++. .++|++|+....+ .+|+.+++........
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~~~~~~--~~tv~e~l~~~~~~~~ 90 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQYIKADY--EGTVRDLLSSITKDFY 90 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEecccccCCC--CCCHHHHHHHHhhhcc
Confidence 3456899999999999999999999999999 99999998774 5899999865433 3799998865432221
Q ss_pred CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---
Q 023126 156 APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--- 226 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--- 226 (287)
. ......++++.++ ...++++.+|||||+||++||++++.+|+++++||++..||. .+++.++++..
T Consensus 91 ~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 166 (246)
T cd03237 91 T----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNE 166 (246)
T ss_pred c----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 1223456666666 345678889999999999999999999999999999999998 34445555432
Q ss_pred -CceEEEeCHHHHHH
Q 023126 227 -EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 -~~i~vtHd~~~~~~ 240 (287)
..|++|||++++..
T Consensus 167 ~tiiivsHd~~~~~~ 181 (246)
T cd03237 167 KTAFVVEHDIIMIDY 181 (246)
T ss_pred CEEEEEeCCHHHHHH
Confidence 34699999998875
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.94 E-value=7.3e-28 Score=239.14 Aligned_cols=198 Identities=16% Similarity=0.089 Sum_probs=156.1
Q ss_pred CCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.++++++++++.|+. ...+ +++ +++++||+++|+|+||||||||+++|+|+++ |++|++.++|.+.
T Consensus 2 ~~~l~~~nl~~~y~~~~~~~~il-----~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~ 73 (648)
T PRK10535 2 TALLELKDIRRSYPSGEEQVEVL-----KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVA 73 (648)
T ss_pred CcEEEEeeEEEEeCCCCCCeeee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcC
Confidence 357899999999963 2456 888 9999999999999999999999999999999 9999999988542
Q ss_pred -----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCC
Q 023126 123 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 189 (287)
Q Consensus 123 -----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~q 189 (287)
.+.++|++|++..++ ++|+.+|+.+.....+....+..+++.+.++.++ ...+..+.+||+||+|
T Consensus 74 ~~~~~~~~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 74 TLDADALAQLRREHFGFIFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred cCCHHHHHHHHhccEEEEeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHH
Confidence 235899999975333 3789999987654444333334456778888877 3446778899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
|+++|++++.+|+++++|||+..||.. +.+.+.++.+ ..+++||+++.+.. |++ |++++.|++++..
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999993 4444444432 24699999998755 443 7888888887754
No 305
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.1e-27 Score=235.40 Aligned_cols=191 Identities=15% Similarity=0.052 Sum_probs=142.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
++.++++++.|+.+.++ +++ +.|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++.. .++|+
T Consensus 1 ~i~i~nls~~~g~~~~l-----~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~~ 69 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLL-----DNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAWV 69 (638)
T ss_pred CEEEEEEEEEeCCceee-----cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEEE
Confidence 46789999999998888 999 9999999999999999999999999999999 999999887643 48899
Q ss_pred eCCCCCCCcccCCccccHHHH-----------------------HHhc----CCCCCchHHHHHHHHHHhcc---CCCCC
Q 023126 130 PMDGFHLYLSQLDAMEDPKEA-----------------------HARR----GAPWTFNPLLLLNCLKNLRN---QGSVY 179 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e~i~~~-----------------------~~~~----~~~~~~~~~~~~~~l~~l~~---~~~~~ 179 (287)
+|+..... .++.+++... .... .........++.++++.++. ..+++
T Consensus 70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 98643221 2333222110 0000 01111223467788888884 34678
Q ss_pred CCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccc-
Q 023126 180 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI- 247 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v- 247 (287)
+.+||||||||++||++++.+|++|++|+|+..||......+.+++. .+|+||||++++.. +++ |++.
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 88999999999999999999999999999999999955555544432 35799999999876 444 6665
Q ss_pred cCCChHHH
Q 023126 248 STGKPPDV 255 (287)
Q Consensus 248 ~~G~~~ev 255 (287)
..|.....
T Consensus 227 ~~g~~~~~ 234 (638)
T PRK10636 227 YTGNYSSF 234 (638)
T ss_pred ecCCHHHH
Confidence 34655543
No 306
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.94 E-value=9.4e-28 Score=235.50 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=148.6
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
-+++++++++|.+ +.++ +++ +.+++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 330 ~i~~~~v~f~y~~~~~~il-----~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPAL-----DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTL 401 (571)
T ss_pred eEEEEEEEEEcCCCCCccc-----cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCH
Confidence 4788999999965 4456 888 9999999999999999999999999999999 9999999998643
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG 186 (287)
++.++|++|+++.+. -|+++|+.++. ++..+.+++.+.++.++ .+.+..+ ..||||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~---~Ti~~Ni~~~~-----~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG 473 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFN---DTIANNIAYGR-----TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473 (571)
T ss_pred HHHHhhceEEccCccccc---ccHHHHHhcCC-----CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence 345999999987554 48999987531 11233445555555443 2333333 379999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|+++..+++++++||++.-+|++ +.+.+.+..+ ..|+|||+.+.... +++ |++++.|+.++
T Consensus 474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~ 553 (571)
T TIGR02203 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNE 553 (571)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999994 4444555533 34699999988766 554 78889999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+++
T Consensus 554 l~~ 556 (571)
T TIGR02203 554 LLA 556 (571)
T ss_pred HHH
Confidence 753
No 307
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.94 E-value=2.8e-28 Score=205.39 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=112.2
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeC
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~q 131 (287)
+++++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.++|.+...
T Consensus 1 ~~~~l~~~~~~~~~l-----~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~------- 65 (180)
T cd03214 1 EVENLSVGYGGRTVL-----DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS------- 65 (180)
T ss_pred CeeEEEEEECCeeeE-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc-------
Confidence 457888888876666 888 9999999999999999999999999999999 999998887632200
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCc
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~ 209 (287)
. .. ......+.+.. ++++.++ ...+..+..||+||+||+++|++++.+|+++++|+|
T Consensus 66 --~--~~--~~~~~~i~~~~---------------q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 124 (180)
T cd03214 66 --L--SP--KELARKIAYVP---------------QALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP 124 (180)
T ss_pred --C--CH--HHHHHHHhHHH---------------HHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 0 00 00000111110 0444444 234567789999999999999999999999999999
Q ss_pred ccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 210 YLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 210 ~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+..+|. .+.+.+.++.. ..|++||+++.+..
T Consensus 125 ~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 125 TSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 999998 34444444433 34699999998755
No 308
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=2.4e-27 Score=235.08 Aligned_cols=193 Identities=15% Similarity=0.037 Sum_probs=143.2
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
+++++++++.|+.+.++ +++ +.|.+|+++||+||||||||||+++|+|+++ |++|+|.+++.. .++++
T Consensus 3 ~l~i~~ls~~~~~~~il-----~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~l 71 (635)
T PRK11147 3 LISIHGAWLSFSDAPLL-----DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVARL 71 (635)
T ss_pred EEEEeeEEEEeCCceeE-----eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEEe
Confidence 68899999999988777 999 9999999999999999999999999999999 999999887532 36778
Q ss_pred eCCCCCCCcccCCccccHH------------------------------HHHHh---cC-CCCCchHHHHHHHHHHhccC
Q 023126 130 PMDGFHLYLSQLDAMEDPK------------------------------EAHAR---RG-APWTFNPLLLLNCLKNLRNQ 175 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e~i~------------------------------~~~~~---~~-~~~~~~~~~~~~~l~~l~~~ 175 (287)
+|++... ...++.+++. ..... +. ........++.++++.++..
T Consensus 72 ~q~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 149 (635)
T PRK11147 72 QQDPPRN--VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD 149 (635)
T ss_pred ccCCCCC--CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC
Confidence 7764311 1123333321 00000 00 01112244677888888865
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH---HHh----h
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL----K 244 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~---rv~----g 244 (287)
.++++.+|||||+||++||++++.+|++|++|+|+..||....+.+.+++ ..+|++|||.+++.. +++ |
T Consensus 150 ~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G 229 (635)
T PRK11147 150 PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRG 229 (635)
T ss_pred CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 67888999999999999999999999999999999999995444444443 345799999999876 554 6
Q ss_pred ccc-cCCChHHHH
Q 023126 245 RHI-STGKPPDVA 256 (287)
Q Consensus 245 r~v-~~G~~~ev~ 256 (287)
+++ ..|...+..
T Consensus 230 ~i~~~~g~~~~~~ 242 (635)
T PRK11147 230 KLVSYPGNYDQYL 242 (635)
T ss_pred EEEEecCCHHHHH
Confidence 776 357665543
No 309
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.3e-28 Score=231.99 Aligned_cols=194 Identities=11% Similarity=0.072 Sum_probs=141.3
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++++.+ +.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 247 ~~~~i~~~~l~~~~--~~~l-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 247 GEVILEVRNLTSLR--QPSI-----RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHN 316 (491)
T ss_pred CCcEEEEeCccccc--Cccc-----ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCC
Confidence 34688999998873 3355 888 9999999999999999999999999999999 99999999875431
Q ss_pred ------ceeEEEeCCCC--CCCcccCCcccc-----HHHHHHhcCC-CCCchHHHHHHHHHHhcc---CCCCCCCCCCcc
Q 023126 124 ------DVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRN---QGSVYAPSFDHG 186 (287)
Q Consensus 124 ------~~i~~v~qd~~--~~~~~~ltv~e~-----i~~~~~~~~~-~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG 186 (287)
..++|++|+.. .++. .+++.+| +.+....++. ......+.+.+.++.++. ..++++.+||||
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 395 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGG 395 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCccc-CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcH
Confidence 23889999852 1222 3555544 3221111121 111223456677777763 347788899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCCh
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKP 252 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~ 252 (287)
||||+++|++++.+|++|++|||+..+|. .+++.+.++.. .+|++|||++++.. |++ |+++..+++
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~ 475 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDT 475 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcc
Confidence 99999999999999999999999999999 34444544432 24699999999876 443 666654443
No 310
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=1.3e-27 Score=232.71 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=131.4
Q ss_pred ccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 51 VFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
.+++++++++|++. .++ +++ +++++|+.++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 334 ~I~~~~vsf~Y~~~~~vL-----~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~ 405 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVL-----DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDE 405 (529)
T ss_pred eEEEEEEEEecCCCCcee-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHH
Confidence 48899999999753 355 888 9999999999999999999999999999999 99999999986543
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcccC
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVG 188 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG~~ 188 (287)
+.++|++|+++.+. -|++||+.++. +. ...+++.++++..+ ++.+..+ ..||||||
T Consensus 406 lr~~i~~V~Q~~~lF~---~TI~eNI~~g~-----~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQr 476 (529)
T TIGR02868 406 LRRRISVFAQDAHLFD---TTVRDNLRLGR-----PD-ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGER 476 (529)
T ss_pred HHhheEEEccCccccc---ccHHHHHhccC-----CC-CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHH
Confidence 46999999987654 49999998642 21 12334444444433 2333332 37999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDL 235 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~ 235 (287)
||+++|+|+..+|+++++||++.-+|.+ +.+.+.+... +.|+|||++
T Consensus 477 QRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 477 QRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999983 4455555432 346899974
No 311
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.94 E-value=2.5e-27 Score=204.92 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=125.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-cCCCCCCceeEEEeCCCCCCCcccCCccccHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 150 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~ 150 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|+|. +++... .+.+++.. .+.+|+.+|+.+.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~~~~l--~~~ltv~enl~~~ 73 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGANSFI--LPGLTGEENARMM 73 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----cccccccc--CCcCcHHHHHHHH
Confidence 677 9999999999999999999999999999999 9999986 655321 12233222 2348999999887
Q ss_pred HHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhh-
Q 023126 151 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMF- 225 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~- 225 (287)
...++.......+.+.+ +..+....+.++..||+||+||+++|++++.+|+++++||++..+|.. +++.+.+..
T Consensus 74 ~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~ 152 (213)
T PRK15177 74 ASLYGLDGDEFSHFCYQ-LTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ 152 (213)
T ss_pred HHHcCCCHHHHHHHHHH-HhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh
Confidence 66554322111111111 112334456788899999999999999999999999999999889983 333333222
Q ss_pred c-CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 226 D-EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 226 ~-~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+ ..|++||+++.+.. +++ |++++.|+.++..
T Consensus 153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 2 35799999999875 544 7888888877764
No 312
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=3.4e-27 Score=204.54 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=124.2
Q ss_pred ccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------
Q 023126 53 GKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 122 (287)
Q Consensus 53 ~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-------- 122 (287)
.+.++.+.|+. ..++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|+|.+++...
T Consensus 2 ~~~~~~~~~~~~~~il-----~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 2 QVTNGYFSWGSGLATL-----SNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred eeeeeEEecCCCCcce-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCccccccccccc
Confidence 35667777864 3445 888 9999999999999999999999999999999 9999999887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSg 185 (287)
+..++|++|++..+ . .|+.+|+.+... . ..++..+.++.++. ..+.++..||+
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~--~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~ 143 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-N--ATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSG 143 (218)
T ss_pred chhhcceEEEEcCCCccc-c--ccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCH
Confidence 13589999997543 3 588898865321 1 11122223332221 12356789999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHH------Hhhc---CceEEEeCHHHHH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS------SMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~------~~~~---~~i~vtHd~~~~~ 239 (287)
||+||++||++++.+|+++++|+++..||....+.+. .+.+ ..|++||+++.+.
T Consensus 144 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 144 GQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 9999999999999999999999999999994333222 2222 2469999999863
No 313
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=2.3e-27 Score=203.52 Aligned_cols=162 Identities=17% Similarity=0.149 Sum_probs=122.4
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.+.++++.+.|.. +.++ +++ +.+++|++++|+|+||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il-----~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~ 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPIL-----KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF 77 (202)
T ss_pred eEEEEccEEEeccCCCCceee-----eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc
Confidence 3556777777753 3455 888 99999999999999999999999999999861114799998887532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
...++|++|++..++ .+|+.+|+.+..... .+.++..||+||+||+++|++++
T Consensus 78 ~~~~~~~i~~~~q~~~~~~--~~tv~~~l~~~~~~~---------------------~~~~~~~LS~Ge~qrl~laral~ 134 (202)
T cd03233 78 AEKYPGEIIYVSEEDVHFP--TLTVRETLDFALRCK---------------------GNEFVRGISGGERKRVSIAEALV 134 (202)
T ss_pred hhhhcceEEEEecccccCC--CCcHHHHHhhhhhhc---------------------cccchhhCCHHHHHHHHHHHHHh
Confidence 235899999865444 379999987643210 45677899999999999999999
Q ss_pred cCccEEEEcCcccCCCh----hhHHHHHHhhc---Cc-eEEE-eCHHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK-WFIE-VDLDTAMQ 240 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~-i~vt-Hd~~~~~~ 240 (287)
.+|+++++|||+..+|. .+++.+.++.+ .. ++++ |+.+.+..
T Consensus 135 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 135 SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYD 185 (202)
T ss_pred hCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHH
Confidence 99999999999999998 45555665543 22 4544 55566654
No 314
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=2.8e-27 Score=232.44 Aligned_cols=191 Identities=17% Similarity=0.199 Sum_probs=147.8
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
..++++++++.|.. ..++ +++ +++++||.++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL-----~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~ 407 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPAL-----DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQL 407 (576)
T ss_pred ceEEEEEEEEECCCCCCCccc-----cceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhc
Confidence 35789999999964 3456 888 9999999999999999999999999999999 9999999998543
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCC
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFD 184 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lS 184 (287)
++.++|++|+++.+. .|+++|+.++ .+. .+.+++.+.++.++ .+.+. ....||
T Consensus 408 ~~~~~~~~i~~~~Q~~~lf~---~Ti~~Ni~~~-----~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 408 DPAELRARMALVPQDPVLFA---ASVMENIRYG-----RPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred CHHHHHHhceEEccCCcccc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 235999999987554 5899998653 221 12344444444433 22222 334799
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
|||+||+++|+++..+++++++||++.-+|+. +.+.+.++.+ ..|++||+++.... +++ |++++.|+.
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999983 4445555532 34799999988766 555 899999998
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++.+
T Consensus 559 ~~l~~ 563 (576)
T TIGR02204 559 AELIA 563 (576)
T ss_pred HHHHH
Confidence 88654
No 315
>PLN03073 ABC transporter F family; Provisional
Probab=99.94 E-value=6.3e-27 Score=233.57 Aligned_cols=191 Identities=15% Similarity=0.129 Sum_probs=144.4
Q ss_pred CCCccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 48 AQPVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..++++++++++.|++ ..++ +++ +.+.+|+++||+||||||||||+++|+|+++ |++|+|.+++. ..
T Consensus 505 ~~~~L~~~~ls~~y~~~~~il-----~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~~---~~ 573 (718)
T PLN03073 505 GPPIISFSDASFGYPGGPLLF-----KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSAK---VR 573 (718)
T ss_pred CCceEEEEeeEEEeCCCCeeE-----eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECCc---ee
Confidence 4578999999999964 4466 888 9999999999999999999999999999999 99999987653 35
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|++|+... .+++.++........ .+. ...+++.++|+.++.. .++++..||||||||++||++++.+|+
T Consensus 574 igyv~Q~~~~----~l~~~~~~~~~~~~~-~~~-~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~ 647 (718)
T PLN03073 574 MAVFSQHHVD----GLDLSSNPLLYMMRC-FPG-VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 647 (718)
T ss_pred EEEEeccccc----cCCcchhHHHHHHHh-cCC-CCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCC
Confidence 9999998521 244555543322111 111 2245677888888743 467888999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHH----HHhhcCceEEEeCHHHHHH---HHh----hccc-cCCChHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDV----SSMFDEKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDV 255 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l----~~~~~~~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev 255 (287)
+|++|||+..||....+.+ .+.....|++|||++++.. |++ |+++ ..|+..+.
T Consensus 648 lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 648 ILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999998433333 3322345799999999876 443 6666 56766553
No 316
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=3.8e-27 Score=230.06 Aligned_cols=190 Identities=17% Similarity=0.102 Sum_probs=145.1
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|+. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l-----~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~ 386 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTL-----RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWD 386 (544)
T ss_pred CeEEEEEEEEEcCCCCcccc-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCC
Confidence 35888999999954 4566 888 9999999999999999999999999999999 9999999988653
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHH---------HHHHHhccCCC----CCCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQGS----VYAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~---------~~l~~l~~~~~----~~~~~lSg 185 (287)
++.++|++|+++.+. .|+++|+.+.. +. ...+++. +.++.+..+.+ .....|||
T Consensus 387 ~~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSg 457 (544)
T TIGR01842 387 RETFGKHIGYLPQDVELFP---GTVAENIARFG-----EN-ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSG 457 (544)
T ss_pred HHHHhhheEEecCCccccc---ccHHHHHhccC-----CC-CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCH
Confidence 345999999976553 48999987421 11 1122222 33333422222 34568999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhh---cCceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF---DEKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~---~~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||+||+++|+|+..+|+++++||++..+|. .+.+.+.++. ...|++||+++.... +++ |++++.|+.
T Consensus 458 Gq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~ 537 (544)
T TIGR01842 458 GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGER 537 (544)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCH
Confidence 999999999999999999999999999998 3445555553 234699999987655 544 888999988
Q ss_pred HHHH
Q 023126 253 PDVA 256 (287)
Q Consensus 253 ~ev~ 256 (287)
+++.
T Consensus 538 ~~l~ 541 (544)
T TIGR01842 538 DEVL 541 (544)
T ss_pred HHHh
Confidence 7764
No 317
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-27 Score=222.00 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=153.0
Q ss_pred ccccCcccccccccc--hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSL--KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~--~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++|+++.|.+.. ++ +++ +.+++||.++|+|++|||||||++.|.|.+. |++|+|..+|.+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L-----~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYPGQQTKAL-----KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecCCCccchh-----hccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCCh
Confidence 889999999998764 77 888 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---------CCC----CCCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lSgG 186 (287)
+..+++++|....+. -|+++|+... .+.+ ..+.+.++++.++. +.+ ..-..||||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~---~Tlr~NL~lA-----~~~A-sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 408 QALRETISVLTQRVHLFS---GTLRDNLRLA-----NPDA-SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred hhHHHHHhhhccchHHHH---HHHHHHHhhc-----CCCC-CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 235788999865443 4888888653 2332 33455666666651 222 233489999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+++.+++.++++|||+..||. ++++.+.+..+ ..++|||++..+.. |++ |+++++|+..+
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~ 558 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAE 558 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHh
Confidence 99999999999999999999999999998 45555555554 35799999999888 766 99999999999
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 559 Ll~ 561 (573)
T COG4987 559 LLA 561 (573)
T ss_pred hhc
Confidence 876
No 318
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3e-27 Score=204.94 Aligned_cols=184 Identities=16% Similarity=0.050 Sum_probs=141.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc-------eeEEE-eCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD-------VATVL-PMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~-------~i~~v-~qd~~~~~~~~ltv 143 (287)
+++ |.|.+|+++|++|+|||||||++|+|.|++. |++|.|.++|..+.+ .++++ .|-...++. +.+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wd--lp~ 115 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWD--LPA 115 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeee--chh
Confidence 666 9999999999999999999999999999999 999999999976533 13333 333222232 345
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
.+.+......|..+.+.-.++...+-+.++. ..+.++..||-|||+|+.+|++|++++++|++||+++.||-.....+
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 5555555666766655545555555555553 46778889999999999999999999999999999999998555555
Q ss_pred HHhhc-------C-ceEEEeCHHHHHH---HHh----hccccCCChHHHHHHHHH
Q 023126 222 SSMFD-------E-KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 222 ~~~~~-------~-~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~~~~ 261 (287)
+++.. . +++.||+++.+.. |++ |+++.+|+..++.++|..
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence 54443 2 3589999999888 665 999999999988777644
No 319
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=5.2e-27 Score=230.85 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=145.6
Q ss_pred CccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
..++++++++.|++ ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 333 ~~i~~~~v~~~y~~~~~~l-----~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~ 404 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGV-----FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTR 404 (585)
T ss_pred CeEEEEEEEEECCCCCccc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCH
Confidence 35889999999975 4455 888 9999999999999999999999999999999 9999999988643
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccC----CCCCCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQ----GSVYAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~----~~~~~~~lSgG 186 (287)
++.++|++|+++.+. .|+++|+.++. +.. ..+.+.+.++ .+..+ .......||||
T Consensus 405 ~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~~-~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgG 475 (585)
T TIGR01192 405 ESLRKSIATVFQDAGLFN---RSIRENIRLGR-----EGA-TDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGG 475 (585)
T ss_pred HHHHhheEEEccCCccCc---ccHHHHHhcCC-----CCC-CHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHH
Confidence 245899999976543 58999987532 111 1222222222 22111 22345589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|++++.+|+++++||++..+|.+ +++.+.+... ..|++||+++.+.. +++ |++++.|+.++
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 555 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQE 555 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999994 4444444432 34799999998865 554 88889999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+.+
T Consensus 556 l~~ 558 (585)
T TIGR01192 556 LIQ 558 (585)
T ss_pred HHH
Confidence 764
No 320
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=3.6e-27 Score=236.28 Aligned_cols=191 Identities=14% Similarity=0.142 Sum_probs=148.2
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++|+. +.++ +++ +.+++|+.++|+|+||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 455 ~i~~~~vsf~y~~~~~~il-----~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~ 526 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVL-----SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADP 526 (694)
T ss_pred eEEEEEEEEEcCCCCcccc-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCH
Confidence 5888999999963 3456 888 9999999999999999999999999999999 99999999987542
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG 186 (287)
+.++|++|+++.+. .|++||+.+. .+. ...+.+.++++..+ .+.+ .....||||
T Consensus 527 ~~~r~~i~~v~q~~~lf~---~ti~eNi~~~-----~~~-~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgG 597 (694)
T TIGR01846 527 AWLRRQMGVVLQENVLFS---RSIRDNIALC-----NPG-APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGG 597 (694)
T ss_pred HHHHHhCeEEccCCeehh---hhHHHHHhcC-----CCC-CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHH
Confidence 45899999977554 5899998753 121 12333333333322 2223 234589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|+|++.+|+++++||++..+|+ .+.+.+.+... ..|++||+++.+.. +++ |++++.|+.++
T Consensus 598 q~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~ 677 (694)
T TIGR01846 598 QRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEE 677 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999998 34455555432 34799999998876 555 89999999988
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
++..
T Consensus 678 l~~~ 681 (694)
T TIGR01846 678 LLAL 681 (694)
T ss_pred HHHc
Confidence 7643
No 321
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.6e-27 Score=221.79 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=150.7
Q ss_pred ccccCcccccccccc-hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQNKTSL-KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
.++++++.+.|++.. ++ +++ ++|++||.|||+|+|||||||++|+|.+++ -++|+|.++|.+.
T Consensus 351 ~I~F~dV~f~y~~k~~iL-----~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~ 421 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVL-----KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLE 421 (591)
T ss_pred cEEEEeeEEEeCCCCcee-----cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChH
Confidence 488999999999876 78 999 999999999999999999999999999998 4899999999764
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cC----CCCCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~lSgG~ 187 (287)
++.|||+|||...+. -|+..|+.++ .+... .+++.+..++.+ .+ ...+-..|||||
T Consensus 422 SlR~~Ig~VPQd~~LFn---dTIl~NI~YG-----n~sas-~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGe 492 (591)
T KOG0057|consen 422 SLRQSIGVVPQDSVLFN---DTILYNIKYG-----NPSAS-DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGE 492 (591)
T ss_pred HhhhheeEeCCcccccc---hhHHHHhhcC-----CCCcC-HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccch
Confidence 455999999976444 3888888753 44332 233344444333 22 223455899999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||+++++|++.+|.++++||.+.-||. ++++.+.+... +.|+|-|+++.+.. +++ |++.+.|+..|+
T Consensus 493 kQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~el 572 (591)
T KOG0057|consen 493 KQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSEL 572 (591)
T ss_pred HHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHH
Confidence 9999999999999999999999999997 45555555332 35799999999998 665 899999999998
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
+.
T Consensus 573 l~ 574 (591)
T KOG0057|consen 573 LA 574 (591)
T ss_pred hh
Confidence 76
No 322
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=6.9e-27 Score=229.34 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=145.4
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.++++++++.|.. +.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l-----~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~ 384 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPAL-----ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQL 384 (569)
T ss_pred cEEEEEEEEECCCCCCccc-----cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCH
Confidence 4778899998864 3456 888 9999999999999999999999999999999 9999999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG 186 (287)
++.++|++|+++.+. .|+++|+.++. +. ...+.+.+.++..+ .+.+ .....||||
T Consensus 385 ~~~~~~i~~v~q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgG 455 (569)
T PRK10789 385 DSWRSRLAVVSQTPFLFS---DTVANNIALGR-----PD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGG 455 (569)
T ss_pred HHHHhheEEEccCCeecc---ccHHHHHhcCC-----CC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHH
Confidence 245899999976543 48999987532 11 12233333333322 1222 334589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
|+||+++|++++.+|+++++||++..+|.+ +++.++++.. ..|++||+++.... +++ |++++.|+.++
T Consensus 456 q~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 456 QKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHH
Confidence 999999999999999999999999999983 4445555432 34699999988766 554 89999999888
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+.+
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 754
No 323
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=3.5e-27 Score=195.69 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=104.6
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
++++++++.|+.+.++ +++ +.+++||+++|+|+||||||||+++|+|+++ |++|+|.+++.....
T Consensus 1 l~~~~l~~~~~~~~vl-----~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~------ 66 (163)
T cd03216 1 LELRGITKRFGGVKAL-----DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSF------ 66 (163)
T ss_pred CEEEEEEEEECCeEEE-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCc------
Confidence 3567889999877666 888 9999999999999999999999999999999 999998877632100
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcc
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~ 210 (287)
.+..+ .... .++ ++++||+||+||+++|++++.+|+++++|||+
T Consensus 67 ----------~~~~~---~~~~------------------~i~-----~~~qLS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 67 ----------ASPRD---ARRA------------------GIA-----MVYQLSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred ----------CCHHH---HHhc------------------CeE-----EEEecCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 00000 0000 000 01119999999999999999999999999999
Q ss_pred cCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 211 LFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 211 lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
..+|. .+++.++++.. ..|++|||++.+..
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99998 34445544432 24689999997754
No 324
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=2e-26 Score=207.14 Aligned_cols=189 Identities=10% Similarity=0.104 Sum_probs=136.5
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
...+.++++++++. .+.++ +++ +.+++|+++||+|+||||||||+++|+|+++ |++|+|.++| .
T Consensus 35 ~~~~~l~i~nls~~--~~~vL-----~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~ 99 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVL-----KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----R 99 (282)
T ss_pred CCCCeEEEEEEEEe--cccce-----eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----E
Confidence 44567888999885 34455 888 9999999999999999999999999999999 9999999876 3
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHH------HHHHHHHhcc----CCCCCCCCCCcccCCchhhhh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL------LLNCLKNLRN----QGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~------~~~~l~~l~~----~~~~~~~~lSgG~~qrv~ia~ 195 (287)
++|++|++..+ + .|+.+|+.+.... . ...... +.+.+..+.. ..+..+..||+||+||+++|+
T Consensus 100 i~yv~q~~~l~-~--~tv~enl~~~~~~---~-~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAr 172 (282)
T cd03291 100 ISFSSQFSWIM-P--GTIKENIIFGVSY---D-EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLAR 172 (282)
T ss_pred EEEEeCccccc-c--cCHHHHhhccccc---C-HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHH
Confidence 89999996533 2 4888888653211 0 001011 1112222211 112345699999999999999
Q ss_pred hhccCccEEEEcCcccCCChhhHHHHH-----Hhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~~~~~l~-----~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+++.+|+++++|+|+..||....+.+. .+.. .++++||+++.+.. +++ |++++.|+++++..
T Consensus 173 aL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 173 AVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999984333332 2221 24699999998754 443 78888888877643
No 325
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=191.37 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=138.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---- 125 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~---- 125 (287)
+++.++++...+.+..+ .++ |++.+||.+-|.||||||||||+++|+|+++ |++|+|.+.+......
T Consensus 2 ~L~a~~L~~~R~e~~lf-----~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~ 73 (209)
T COG4133 2 MLEAENLSCERGERTLF-----SDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESY 73 (209)
T ss_pred cchhhhhhhccCcceee-----cceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhH
Confidence 56788999999999998 999 9999999999999999999999999999999 9999999987654221
Q ss_pred ---eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 126 ---ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 126 ---i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.-|+.-.+- ..+++|++||+.|....++. ...+.+.++++.++ ...+.++.+||-|||+|+++|+..+.+
T Consensus 74 ~~~l~yLGH~~g--iK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 74 HQALLYLGHQPG--IKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred HHHHHHhhcccc--ccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCC
Confidence 334432222 23459999999998887764 23456778888888 567889999999999999999999999
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhc----C---ceEEEeCHHH
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFD----E---KWFIEVDLDT 237 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~----~---~i~vtHd~~~ 237 (287)
+.++|+||++.-+|.+-...+..++. . ++..||..--
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 99999999999999854444444432 2 2466776543
No 326
>PLN03130 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.3e-26 Score=248.08 Aligned_cols=190 Identities=15% Similarity=0.172 Sum_probs=152.7
Q ss_pred CccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..+++++++++|.+. .++ +++ ++|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+..
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL-----~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVL-----HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeCCCCCcee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCC
Confidence 368999999999653 466 888 9999999999999999999999999999999 99999999997643
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSg 185 (287)
+.++++|||++.+. -|+++|+.... ....+.+.++++..+ .+.+..+ ..|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~---GTIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFS---GTVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCcccc---ccHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 45999999987654 49999986431 123344445544432 2334333 37999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||++||+|++.++++|++||.+.-+|. .+++.+++.+. ++|+|+|.++.+.. |++ |++++.|+++
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~ 1457 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPE 1457 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998 45555665553 34799999999988 666 9999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++++
T Consensus 1458 eLl~ 1461 (1622)
T PLN03130 1458 NLLS 1461 (1622)
T ss_pred HHHh
Confidence 9875
No 327
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=1.1e-26 Score=248.12 Aligned_cols=189 Identities=14% Similarity=0.166 Sum_probs=151.3
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++|.+ ..++ +++ +.+++||.+||+|+||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL-----~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~ 1305 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVL-----HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGL 1305 (1495)
T ss_pred cEEEEEEEEEECCCCCccc-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCH
Confidence 5889999999954 3566 888 9999999999999999999999999999999 9999999999764
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCC----CCCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVY----APSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~----~~~lSgG 186 (287)
++.++++|||++.+. -|+++|+.... ....+.+.++++..+ .+.+.. -..||||
T Consensus 1306 ~~lR~~i~iVpQdp~LF~---gTIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgG 1375 (1495)
T PLN03232 1306 TDLRRVLSIIPQSPVLFS---GTVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVG 1375 (1495)
T ss_pred HHHHhhcEEECCCCeeeC---ccHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHH
Confidence 345999999987654 49999986421 123344445554432 233332 3479999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||++||+|++.++++|++||.+.-+|. .+.+.+++.++ ++|+|+|.++.+.. |++ |++++.|++++
T Consensus 1376 QrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~e 1455 (1495)
T PLN03232 1376 QRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455 (1495)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998 34455555543 34799999999988 665 99999999999
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+++
T Consensus 1456 Ll~ 1458 (1495)
T PLN03232 1456 LLS 1458 (1495)
T ss_pred HHh
Confidence 875
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=2.1e-26 Score=193.18 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=105.5
Q ss_pred CcccccccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCC
Q 023126 55 TRSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~ 134 (287)
.++++.|++..++ ++++.+++|++++|+||||||||||+++|+|+++ |++|+|.+++. .++|++|+..
T Consensus 4 ~~l~~~~~~~~~l-----~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~----~i~~~~q~~~ 71 (177)
T cd03222 4 PDCVKRYGVFFLL-----VELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWDGI----TPVYKPQYID 71 (177)
T ss_pred CCeEEEECCEEEE-----ccCcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEECCE----EEEEEcccCC
Confidence 4778889887666 6678999999999999999999999999999999 99999998763 2677766421
Q ss_pred CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCC
Q 023126 135 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (287)
Q Consensus 135 ~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllD 214 (287)
||+||+||+++|++++.+++++++||++..+|
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 99999999999999999999999999999999
Q ss_pred hh----hHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 215 GG----VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 215 e~----~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.. +.+.+.++.. ..+++||+++.+..
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 83 3444444432 24699999999875
No 329
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.93 E-value=2e-26 Score=187.36 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=106.9
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeC
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~q 131 (287)
+++++++.|+....+ +++ +.+++||+++|+|+||||||||+++|+|+++ |++|+|.+++. ..++|++|
T Consensus 2 ~~~~l~~~~~~~~~l-----~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~---~~i~~~~~ 70 (144)
T cd03221 2 ELENLSKTYGGKLLL-----KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST---VKIGYFEQ 70 (144)
T ss_pred EEEEEEEEECCceEE-----EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe---EEEEEEcc
Confidence 567888888776566 888 9999999999999999999999999999999 99999988774 34777766
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l 211 (287)
||+||+||+++|++++.+|+++++|+++.
T Consensus 71 ---------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 71 ---------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999999999999999999999999999
Q ss_pred CCChh----hHHHHHHhhcCceEEEeCHHHHHH
Q 023126 212 FLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 212 llDe~----~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
.+|.. +++.++++....+++||+++++..
T Consensus 100 ~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~ 132 (144)
T cd03221 100 HLDLESIEALEEALKEYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence 99984 344444443335699999998754
No 330
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.93 E-value=4.5e-26 Score=232.62 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=171.9
Q ss_pred CccccCcccccccccc-hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 50 PVFGKTRSLVQNKTSL-KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~-~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
..+.+.++++.|+.+. ++ +++ +.|++||+.|+.|+|||||||++++|.|..+ |++|+++++|.+.
T Consensus 563 ~~~~~~~L~k~y~~~~~Av-----~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~ 634 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAV-----RGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTD 634 (885)
T ss_pred ceEEEcceeeeecchhhhh-----cceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccc
Confidence 4667788999999887 66 788 9999999999999999999999999999999 9999998877543
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.+||+||.+..+. .+|.+|++.+..+..|.+.....+.++..++.++ ...+++++.||||+|+|+++|.|
T Consensus 635 ~~~~~~~iGyCPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 635 FQQVRKQLGYCPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred hhhhhhhcccCCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence 234999999966444 4999999999999999887666667788888888 56678899999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|.++++|+|...+|+ .+|..+.+..+. .|+.||.|+++.. |+. |+..+-|.++++..
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999998 788888888763 4689999999988 665 89999999998763
No 331
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=7.8e-26 Score=217.51 Aligned_cols=178 Identities=12% Similarity=0.001 Sum_probs=139.8
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 128 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~ 128 (287)
.++.++++++.|+.+..+ +++ +.+.+|+++||||+||||||||+|+|+|.+. |++|+|...+. ..++|
T Consensus 2 ~~i~~~~ls~~~g~~~l~-----~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~ 70 (530)
T COG0488 2 SMITLENLSLAYGDRPLL-----ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY 70 (530)
T ss_pred ceEEEeeeEEeeCCceee-----cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence 467889999999999999 999 9999999999999999999999999999999 99999987654 24999
Q ss_pred EeCCCCCCCcccCCccccHHHHHHh-----------cC-------------------CCCCchHHHHHHHHHHhccCC-C
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHAR-----------RG-------------------APWTFNPLLLLNCLKNLRNQG-S 177 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~-----------~~-------------------~~~~~~~~~~~~~l~~l~~~~-~ 177 (287)
++|++..... .|+.+.+...... +. ........++..+|..++... +
T Consensus 71 l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~ 148 (530)
T COG0488 71 LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDED 148 (530)
T ss_pred eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCccc
Confidence 9999764432 5776655432110 00 000111234556666666333 7
Q ss_pred CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
+++.+||||||.|+++|.++..+|++|++|||+-=||-+....|.+.+ ...|+||||.++.-.
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~ 215 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 889999999999999999999999999999999999987666666654 336799999999877
No 332
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=3.7e-26 Score=202.65 Aligned_cols=179 Identities=15% Similarity=0.056 Sum_probs=129.2
Q ss_pred Cccccccccc-chhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-----------cCCCCC
Q 023126 55 TRSLVQNKTS-LKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP 122 (287)
Q Consensus 55 ~~~~~~~~~~-~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-----------~~~~~~ 122 (287)
.+++++|+.. .++ +++..+++|++++|+||||||||||+++|+|+++ |++|+|. ++|...
T Consensus 4 ~~~~~~y~~~~~~l-----~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~ 75 (255)
T cd03236 4 DEPVHRYGPNSFKL-----HRLPVPREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSEL 75 (255)
T ss_pred cCcceeecCcchhh-----hcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchh
Confidence 3677888764 355 6674489999999999999999999999999999 9999995 555432
Q ss_pred C----------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 123 P----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ~----------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
. ..+++++|.....+ .++.+++.+.. ......+.+.++++.++. ..+..+..||+||+||
T Consensus 76 ~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 76 QNYFTKLLEGDVKVIVKPQYVDLIP---KAVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR 147 (255)
T ss_pred hhhhHHhhhcccceeeecchhccCc---hHHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 1 12566666533221 24455554431 112234566788888773 3466778999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH---HHh---hccccC
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ---RVL---KRHIST 249 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~---rv~---gr~v~~ 249 (287)
+++|++++.+|+++++|+++..+|.. +.+.++++.+ ..|++|||++.+.. +++ |++.+.
T Consensus 148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~~~~~~~ 219 (255)
T cd03236 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLYGEPGAY 219 (255)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEECCCCCcc
Confidence 99999999999999999999999993 4455555433 24699999998875 333 555553
No 333
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.93 E-value=5.8e-26 Score=221.05 Aligned_cols=172 Identities=18% Similarity=0.150 Sum_probs=133.1
Q ss_pred ccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.+++++++++|.+. .++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 320 ~i~~~~v~f~y~~~~~~il-----~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~ 391 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPAL-----RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADA 391 (529)
T ss_pred eEEEEEEEEECCCCCcccc-----cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCH
Confidence 58899999999753 456 888 9999999999999999999999999999999 99999999987532
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCC----CCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSV----YAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~----~~~~lSgG 186 (287)
+.++|++|+++.+. .|++||+.++. +. ...+.+.+.++..+ .+.+. ....||||
T Consensus 392 ~~lr~~i~~v~Q~~~lf~---~ti~~Ni~~~~-----~~-~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgG 462 (529)
T TIGR02857 392 DSWRDQIAWVPQHPFLFA---GTIAENIRLAR-----PD-ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGG 462 (529)
T ss_pred HHHHhheEEEcCCCcccC---cCHHHHHhccC-----CC-CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHH
Confidence 35999999986553 59999997642 11 12233444444332 22232 34589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
||||+++|++++.+|+++++||++..+|++ +.+.+.+... ..|++||+++...
T Consensus 463 q~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 521 (529)
T TIGR02857 463 QAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE 521 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 999999999999999999999999999994 3444444432 3479999998764
No 334
>PTZ00243 ABC transporter; Provisional
Probab=99.93 E-value=3.8e-26 Score=244.08 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=150.8
Q ss_pred ccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+++++++++|.+. .++ +++ +.|++||.+||+|++|||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL-----~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l 1379 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVL-----RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGL 1379 (1560)
T ss_pred eEEEEEEEEEeCCCCCcee-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCH
Confidence 58899999999653 356 888 9999999999999999999999999999999 9999999999764
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSgG 186 (287)
++.++++|||++.+. -|+++|+... + ....+.+.++++..+ .+.+..+ ..||||
T Consensus 1380 ~~LR~~I~iVpQdp~LF~---gTIreNIdp~----~---~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgG 1449 (1560)
T PTZ00243 1380 RELRRQFSMIPQDPVLFD---GTVRQNVDPF----L---EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVG 1449 (1560)
T ss_pred HHHHhcceEECCCCcccc---ccHHHHhCcc----c---CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHH
Confidence 345999999987554 4999999531 1 223445555555543 2233333 479999
Q ss_pred cCCchhhhhhhccC-ccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQ-HKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~-a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
||||++||+|++.+ +++|++||.+.-+|.+ +.+.|++.++ ++|+|+|.++.+.. +++ |++++.|+++
T Consensus 1450 QrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~ 1529 (1560)
T PTZ00243 1450 QRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPR 1529 (1560)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999985 8999999999999984 4444555443 34799999999988 665 8999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
+++.
T Consensus 1530 eLl~ 1533 (1560)
T PTZ00243 1530 ELVM 1533 (1560)
T ss_pred HHHh
Confidence 9875
No 335
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.93 E-value=4.7e-26 Score=243.57 Aligned_cols=191 Identities=16% Similarity=0.157 Sum_probs=152.6
Q ss_pred CccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|... .++ +++ +.+++||.+||+|++|||||||+++|.++++ |++|+|.++|.+.
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL-----~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVL-----RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccC
Confidence 468899999999753 456 888 9999999999999999999999999999999 9999999999764
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lSg 185 (287)
++.++++|||++.+. -|+++|+... + ....+.+.++++..+ .+.+..+ ..|||
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~---gTIr~NLdp~----~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSg 1424 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFS---GSLRMNLDPF----S---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSV 1424 (1522)
T ss_pred HHHHHhcCeEECCCCcccC---ccHHHHcCcc----c---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCH
Confidence 345999999987654 3899998521 1 123344445554433 2334333 47999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.++++|++||.+.-+|. .+.+.+++.+. ++|+|+|.++.+.. |++ |++++.|+++
T Consensus 1425 GQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1425 GQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPS 1504 (1522)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999998 34555555543 34799999999988 666 9999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
++++.
T Consensus 1505 eLl~~ 1509 (1522)
T TIGR00957 1505 NLLQQ 1509 (1522)
T ss_pred HHHhC
Confidence 98753
No 336
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=1.3e-26 Score=184.91 Aligned_cols=180 Identities=14% Similarity=0.068 Sum_probs=139.9
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------Cc
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 124 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~ 124 (287)
+.+++++.+.+++-.+ -++ ++|.+|||+.|+||||||||||+.-+.|.+...+--+|++.+++... .+
T Consensus 3 l~l~nvsl~l~g~cLL-----a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR 77 (213)
T COG4136 3 LCLKNVSLRLPGSCLL-----ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77 (213)
T ss_pred eeeeeeeecCCCceEE-----EeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence 4567778777777777 777 99999999999999999999999999999982222379999888642 45
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
.+|+++||+..++ +++|.+|+.+..... .........+...|++.+ ...++.+.++|||||.|+++.+++...|+
T Consensus 78 q~GiLFQD~lLFp--hlsVg~Nl~fAlp~~-~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk 154 (213)
T COG4136 78 QIGILFQDALLFP--HLSVGQNLLFALPAT-LKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPK 154 (213)
T ss_pred heeeeeccccccc--ccccccceEEecCcc-cccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcc
Confidence 6999999987655 499999998754321 112223445677888888 34467788999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHHHHhhc--------CceEEEeCHHHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDVSSMFD--------EKWFIEVDLDTAM 239 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l~~~~~--------~~i~vtHd~~~~~ 239 (287)
++++|+++.-||..+....++..- -++.||||.+.+.
T Consensus 155 ~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 155 ALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred eeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 999999999999755555554421 2479999998875
No 337
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=3.5e-26 Score=223.42 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=135.4
Q ss_pred ccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 51 VFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
.+++++++++|.+ ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 322 ~i~~~~v~f~y~~~~~~l-----~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~ 393 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSV-----GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPE 393 (547)
T ss_pred eEEEEEEEEEeCCCCeEE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHH
Confidence 5889999999964 3456 888 9999999999999999999999999999999 99999999886532
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCC-------CCCCCCcccCCchhh
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------YAPSFDHGVGDPVED 193 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~lSgG~~qrv~i 193 (287)
+.++|++|+++.+. .|+.+| + ...+.+.+.+.++.++..... .-..|||||+||+++
T Consensus 394 ~~~~~i~~v~q~~~lf~---~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 394 DYRKLFSAVFTDFHLFD---QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLAL 460 (547)
T ss_pred HHhhheEEEecChhHHH---Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHH
Confidence 45999999976443 356555 1 122344566667666532211 124899999999999
Q ss_pred hhhhccCccEEEEcCcccCCChhh----HHHHHHhh---c-CceEEEeCHHHHHH--HHh----hccccC
Q 023126 194 DILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMF---D-EKWFIEVDLDTAMQ--RVL----KRHIST 249 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe~~----~~~l~~~~---~-~~i~vtHd~~~~~~--rv~----gr~v~~ 249 (287)
|++++.+|+++++||++..+|.+. .+.+.+.. + ..|++||+++.... +++ |++++.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999843 33444332 2 35799999987655 444 666654
No 338
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=5.6e-26 Score=230.10 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=150.5
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-------
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------- 123 (287)
++++++.+.|..|.-+ .+.++. +.+++|+.+||+|||||||||.+.+|-.+|. |++|.|.++|.+.+
T Consensus 988 I~~~~V~F~YPsRP~~--~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 988 IEFRNVSFAYPTRPDV--PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EEEeeeEeeCCCCCCc--hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence 6778888888876544 334888 9999999999999999999999999999999 99999999997753
Q ss_pred -ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCCCCCC----CCCcccCC
Q 023126 124 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYAP----SFDHGVGD 189 (287)
Q Consensus 124 -~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~~~----~lSgG~~q 189 (287)
+.+++|.|+|..+. -|++||+.++.. .. ..+.+.++++ .+-.+.+..+. +|||||||
T Consensus 1063 R~~i~lVsQEP~LF~---~TIrENI~YG~~--~v----s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFN---GTIRENIAYGSE--EV----SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhc---ccHHHHHhccCC--CC----CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHH
Confidence 45999999987554 599999998711 12 2333333332 22344555444 99999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc------CceEEEeCHHHHHH-HHh-----hccccCCChHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ-RVL-----KRHISTGKPPDVAK 257 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~------~~i~vtHd~~~~~~-rv~-----gr~v~~G~~~ev~~ 257 (287)
|+|||+|++.+|++|++||-+..||-+--+.+++.++ ++|+|.|-+..+.. .++ |+++|+|+-++++.
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999999999844444444443 35899999999988 333 89999999999876
No 339
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=1.5e-26 Score=245.10 Aligned_cols=206 Identities=14% Similarity=0.097 Sum_probs=154.0
Q ss_pred CCccccCccccccc----ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 49 QPVFGKTRSLVQNK----TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~----~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
..+++.+++++.++ .+.++ +++ +.+++|+++||+||||||||||+++|+|+++...|++|+|.++|.+.
T Consensus 757 ~~~l~~~nl~~~~~~~~~~~~iL-----~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~ 831 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKIKKEKRVIL-----NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831 (1394)
T ss_pred CceEEEEeeEEEecCCCCCcEee-----eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC
Confidence 34578889888885 34556 888 99999999999999999999999999999852125789999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcC---CCCCchHHHHHHHHHHhcc--CCCCCCC----CCCcccCCc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRN--QGSVYAP----SFDHGVGDP 190 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~l~~--~~~~~~~----~lSgG~~qr 190 (287)
++.++|++|++..++ .+|++|++.+....+. .+..+..+++.++++.++. ..+..+. .||||||||
T Consensus 832 ~~~~~~i~yv~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqR 909 (1394)
T TIGR00956 832 SSFQRSIGYVQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR 909 (1394)
T ss_pred hhhhcceeeecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhH
Confidence 346899999876444 3899999998765432 1112234567788887773 3455554 799999999
Q ss_pred hhhhhhhccCcc-EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHH-H---HHh----h-ccccCCChH
Q 023126 191 VEDDILVGLQHK-VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAM-Q---RVL----K-RHISTGKPP 253 (287)
Q Consensus 191 v~ia~al~~~a~-~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~-~---rv~----g-r~v~~G~~~ 253 (287)
++||++++.+|+ +|++||++..||. .+++.|+++.+ .+|+++|+++... . +++ | ++++.|++.
T Consensus 910 l~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 910 LTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 999999999997 9999999999998 45556666543 2468999998642 2 444 5 888888874
Q ss_pred H---HHHHHHH
Q 023126 254 D---VAKWRIE 261 (287)
Q Consensus 254 e---v~~~~~~ 261 (287)
+ -+..|+.
T Consensus 990 ~~~~~~~~yf~ 1000 (1394)
T TIGR00956 990 ENSHTIINYFE 1000 (1394)
T ss_pred cccchHHHHHH
Confidence 3 2345554
No 340
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.93 E-value=4.4e-26 Score=242.13 Aligned_cols=190 Identities=12% Similarity=0.127 Sum_probs=147.3
Q ss_pred ccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC----------------
Q 023126 51 VFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP---------------- 110 (287)
Q Consensus 51 ~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p---------------- 110 (287)
-+++++++++|.++ .++ +++ +.+++|+.+||+||||||||||+++|.|++. |
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL-----~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~ 1236 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIY-----KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDM 1236 (1466)
T ss_pred eEEEEEEEEECCCCCCCccc-----cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccc
Confidence 48899999999643 455 888 9999999999999999999999999999999 8
Q ss_pred --------------------------------------CCcccccCCCCC--------CceeEEEeCCCCCCCcccCCcc
Q 023126 111 --------------------------------------QKASSFDSQVKP--------PDVATVLPMDGFHLYLSQLDAM 144 (287)
Q Consensus 111 --------------------------------------~~G~i~~~~~~~--------~~~i~~v~qd~~~~~~~~ltv~ 144 (287)
++|+|.++|.+. ++.++||+|+++.+. .|++
T Consensus 1237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~---gTIr 1313 (1466)
T PTZ00265 1237 TNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN---MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc---ccHH
Confidence 699999999764 345999999987654 6999
Q ss_pred ccHHHHHHhcCCCCCchHHHHHHHHHH---------hccCCCCCC----CCCCcccCCchhhhhhhccCccEEEEcCccc
Q 023126 145 EDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 145 e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~~~----~~lSgG~~qrv~ia~al~~~a~~li~d~~~l 211 (287)
||+.++. +.. ..+.+.++++. +.++.+..+ ..||||||||++||+|++.+|++|++||++.
T Consensus 1314 eNI~~g~-----~~a-t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTS 1387 (1466)
T PTZ00265 1314 ENIKFGK-----EDA-TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATS 1387 (1466)
T ss_pred HHHhcCC-----CCC-CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9998752 211 22333333332 323344433 3799999999999999999999999999999
Q ss_pred CCCh----hhHHHHHHhh---c-CceEEEeCHHHHHH--HHh--------hccc-cCCChHHHHH
Q 023126 212 FLDG----GVWKDVSSMF---D-EKWFIEVDLDTAMQ--RVL--------KRHI-STGKPPDVAK 257 (287)
Q Consensus 212 llDe----~~~~~l~~~~---~-~~i~vtHd~~~~~~--rv~--------gr~v-~~G~~~ev~~ 257 (287)
-||. .+.+.|.+.. + ++|+|+|.+..+.. +++ |+++ +.|+.+|++.
T Consensus 1388 aLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1388 SLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred ccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9998 3455555552 2 35799999999877 443 3545 7899998864
No 341
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.93 E-value=1.1e-25 Score=222.63 Aligned_cols=186 Identities=13% Similarity=0.100 Sum_probs=144.5
Q ss_pred ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCC-----CceeEEEeCCC
Q 023126 63 TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDG 133 (287)
Q Consensus 63 ~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~-----~~~i~~v~qd~ 133 (287)
.+.++ +++ +.+++||+++|+||||||||||+++|+|..+ |+ +|+|.++|... ++.++|++|++
T Consensus 37 ~~~iL-----~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~ 108 (617)
T TIGR00955 37 RKHLL-----KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD 108 (617)
T ss_pred ccccc-----cCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhceeecccc
Confidence 45566 888 9999999999999999999999999999987 75 79999988653 34589999997
Q ss_pred CCCCcccCCccccHHHHHHhcCC---CCCchHHHHHHHHHHhcc--CCCCCCC------CCCcccCCchhhhhhhccCcc
Q 023126 134 FHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRN--QGSVYAP------SFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 134 ~~~~~~~ltv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~l~~--~~~~~~~------~lSgG~~qrv~ia~al~~~a~ 202 (287)
..++ .+||+||+.+....... ...+..+++.++++.++. ..+..+. .||||||||+++|++++.+|+
T Consensus 109 ~~~~--~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~ 186 (617)
T TIGR00955 109 LFIP--TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPP 186 (617)
T ss_pred ccCc--cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCC
Confidence 6544 38999999987654321 112234467888888773 3455544 599999999999999999999
Q ss_pred EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHH-HHHH---HHh----hccccCCChHHHHHH
Q 023126 203 VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLD-TAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 203 ~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~-~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
++++|+++..||. .+++.++++.+ ..|+++|++. .+.. +++ |+++..|++.++...
T Consensus 187 vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~ 257 (617)
T TIGR00955 187 LLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPF 257 (617)
T ss_pred EEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHH
Confidence 9999999999999 45555555543 2468899985 4444 554 899999998887543
No 342
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.93 E-value=6.9e-26 Score=225.35 Aligned_cols=177 Identities=10% Similarity=-0.017 Sum_probs=134.6
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
..++++++++.|. ++.++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|++.+++ +..++
T Consensus 450 ~~i~~~nv~~~~~~~~~il-----~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~ 518 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLI-----ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLF 518 (659)
T ss_pred CeEEEEeeEEECCCCCeee-----ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEE
Confidence 4688999999984 44566 888 9999999999999999999999999999999 9999988764 34599
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCC-CCchHHHHHHHHHHhccC--CCC---------CCCCCCcccCCchhhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSV---------YAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~l~~~--~~~---------~~~~lSgG~~qrv~ia~ 195 (287)
|++|+++... .|+++|+.++....+.. .....+++.++++.++.. .+. ....||||||||+++|+
T Consensus 519 ~v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iAR 595 (659)
T TIGR00954 519 YVPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMAR 595 (659)
T ss_pred EECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHH
Confidence 9999976433 39999987643221111 112344566677666521 111 23589999999999999
Q ss_pred hhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+++.+|+++++||++..+|.+..+.+.+... ..|++||+++.+..
T Consensus 596 al~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 596 LFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKY 644 (659)
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHh
Confidence 9999999999999999999955444444432 35799999998643
No 343
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=7e-26 Score=240.55 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=135.6
Q ss_pred ccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-CCCC---
Q 023126 51 VFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-~~~~--- 122 (287)
-++++++++.|+.+ .++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++ +.+.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL-----~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~ 453 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIY-----KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDI 453 (1466)
T ss_pred cEEEEEEEEEcCCCCCCcee-----ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhC
Confidence 58899999999854 355 888 9999999999999999999999999999999 999999994 4432
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhc----------CC-------------------------------
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----------GA------------------------------- 156 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~----------~~------------------------------- 156 (287)
++.++|++|++..+. .|+++|+.++.... ..
T Consensus 454 ~~~~lr~~Ig~V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 454 NLKWWRSKIGVVSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred CHHHHHHhccEecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 235899999976543 59999998753100 00
Q ss_pred ----------CCCchHHHHHHHHHHhc---------cC----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCC
Q 023126 157 ----------PWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 213 (287)
Q Consensus 157 ----------~~~~~~~~~~~~l~~l~---------~~----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lll 213 (287)
......+.+.++++.++ .+ .......||||||||++||+|++.+|++|++||++..|
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaL 610 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSL 610 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 00112234555544443 11 13456699999999999999999999999999999999
Q ss_pred Ch----hhHHHHHHhh----cCceEEEeCHHHHHH
Q 023126 214 DG----GVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 214 De----~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
|. .+++.+.++. ..+|+++|+++.+..
T Consensus 611 D~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 611 DNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred CHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence 98 4555555553 235799999998755
No 344
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=2.4e-25 Score=214.12 Aligned_cols=176 Identities=13% Similarity=0.082 Sum_probs=142.7
Q ss_pred CCCCccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 47 NAQPVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
.+.++++++++++.|++ +.++ +++ +.|.+|+.+||+||||+|||||+|+|+|.+. |.+|+|.++...
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~-----~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~v--- 385 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLL-----KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGETV--- 385 (530)
T ss_pred CCCeeEEEeccccccCCCceee-----cCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCce---
Confidence 78899999999999976 4777 888 9999999999999999999999999999999 999999887653
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
.++|+.|+...+. +..|+.+++... .+. .....+...|..++ ....+++..||||||.|+.+|..+..+|
T Consensus 386 ~igyf~Q~~~~l~-~~~t~~d~l~~~-----~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~p 458 (530)
T COG0488 386 KIGYFDQHRDELD-PDKTVLEELSEG-----FPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPP 458 (530)
T ss_pred EEEEEEehhhhcC-ccCcHHHHHHhh-----Ccc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCC
Confidence 4999999975444 334666655432 111 12566778888887 4456788899999999999999999999
Q ss_pred cEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~ 240 (287)
.+||+|+|+-=||-+..+.|.+.+ ..+|+||||..++..
T Consensus 459 NvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~ 501 (530)
T COG0488 459 NLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDR 501 (530)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHh
Confidence 999999999999986555555544 346799999999876
No 345
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.92 E-value=1.5e-25 Score=208.26 Aligned_cols=194 Identities=16% Similarity=0.102 Sum_probs=146.1
Q ss_pred ccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
.+.+++++...- .+..+ .++ |++.+|+.+|||||||||||||.|+|.|..+ |.+|.|+++|.+.
T Consensus 334 ~L~Ve~l~~~PPg~~~pil-----~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~ 405 (580)
T COG4618 334 ALSVERLTAAPPGQKKPIL-----KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDR 405 (580)
T ss_pred eeeEeeeeecCCCCCCcce-----ecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCH
Confidence 445555554332 24556 788 9999999999999999999999999999999 9999999998653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHH---------HHHHHHhccCCCCCCC----CCCcc
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAP----SFDHG 186 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~---------~~~l~~l~~~~~~~~~----~lSgG 186 (287)
.+.|||+|||-..+. =|+.|||..... ..+.+++ .+++-.+-++.+..+. .||||
T Consensus 406 e~lG~hiGYLPQdVeLF~---GTIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 406 EQLGRHIGYLPQDVELFD---GTIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred HHhccccCcCcccceecC---CcHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 356999999965444 499999975321 1222222 3334444455555544 89999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
||||+++|+|+-.+|+++++|||-.-||+ .+.+.+..... ..|+|+|-+..... +++ |++...|+.+
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~ 556 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE 556 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHH
Confidence 99999999999999999999999999998 33344444433 34699999998877 554 8889999999
Q ss_pred HHHHHHHH
Q 023126 254 DVAKWRIE 261 (287)
Q Consensus 254 ev~~~~~~ 261 (287)
|+..+-..
T Consensus 557 eVLa~~~~ 564 (580)
T COG4618 557 EVLAKVLR 564 (580)
T ss_pred HHHHHhcC
Confidence 99877554
No 346
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.92 E-value=1.7e-25 Score=218.86 Aligned_cols=170 Identities=14% Similarity=0.003 Sum_probs=129.6
Q ss_pred ccccCccccccccc-----chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-
Q 023126 51 VFGKTRSLVQNKTS-----LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~- 123 (287)
.+++++++++|++. .++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l-----~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFAL-----GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSA 408 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCcee-----ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCC
Confidence 57889999999753 355 888 9999999999999999999999999999999 99999999986543
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCC--------CCCCCCCcccC
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVG 188 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~lSgG~~ 188 (287)
..+++++|+++.+. -|+.+|. .+ ....+++.+.++.++.... .....||||||
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~---~ti~~n~--------~~-~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~ 476 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFD---DLIGPDE--------GE-HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQ 476 (555)
T ss_pred CCHHHHHhhCcEEccChhhhh---hhhhccc--------cc-chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHH
Confidence 34899999976443 3666663 11 1234456666666652211 12357999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCChhhHHHH----H-Hhh---cCceEEEeCHHHHHH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV----S-SMF---DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l----~-~~~---~~~i~vtHd~~~~~~ 240 (287)
||+++|++++.+|+++++||++..+|++..+.+ . .+. ...|++||+++....
T Consensus 477 qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~ 536 (555)
T TIGR01194 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFEL 536 (555)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh
Confidence 999999999999999999999999999444333 2 221 234799999987644
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=99.92 E-value=3.3e-25 Score=217.37 Aligned_cols=168 Identities=14% Similarity=0.045 Sum_probs=126.1
Q ss_pred ccccccccc-chhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-----------cCCCCC-
Q 023126 56 RSLVQNKTS-LKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKP- 122 (287)
Q Consensus 56 ~~~~~~~~~-~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-----------~~~~~~- 122 (287)
.++++||.. +++ .++..+++|+++||+||||||||||+|+|+|+++ |++|+|. ++|.+.
T Consensus 78 ~~~~~yg~~~~~L-----~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~ 149 (590)
T PRK13409 78 EPVHRYGVNGFKL-----YGLPIPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQ 149 (590)
T ss_pred CceEEecCCceeE-----ecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHH
Confidence 488999863 566 7776799999999999999999999999999999 9999986 666432
Q ss_pred ---------CceeEEEeCCCCCCCc-ccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCc
Q 023126 123 ---------PDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDP 190 (287)
Q Consensus 123 ---------~~~i~~v~qd~~~~~~-~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qr 190 (287)
...+++.+|.....+. ...|+.+++... ...+++.++++.++. ..++++.+|||||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr 220 (590)
T PRK13409 150 NYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQR 220 (590)
T ss_pred HHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 1224555554222111 012666665421 134567778887774 4578899999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
++||++++.+|+++++|||+..||. .+++.++++.+ ..|++|||++++..
T Consensus 221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~ 276 (590)
T PRK13409 221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDY 276 (590)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999 34455555432 34799999999875
No 348
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.92 E-value=5.3e-25 Score=234.98 Aligned_cols=189 Identities=14% Similarity=0.118 Sum_probs=150.8
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..+++++++++|.. ..++ +++ +.|++||.+||+|+||||||||+++|.|++ +++|+|.++|.+.
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL-----~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVL-----QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeCCCCccee-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCC
Confidence 45889999999964 4566 888 999999999999999999999999999998 4689999999764
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCCC----CCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~lSg 185 (287)
++.++|+|||++.+. -|+++|+... .....+.+.++++.++ .+.+..+. .|||
T Consensus 1287 ~~~lR~~is~IpQdp~LF~---GTIR~NLdp~-------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSg 1356 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFS---GTFRKNLDPY-------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSN 1356 (1490)
T ss_pred HHHHHhceEEEeCCCccCc---cCHHHHhCcc-------cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCH
Confidence 345999999987664 4999998531 1223455666666554 22333332 7999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.++++|++||++.-+|. .+.+.|++.+. ++|+|+|.++.+.. |++ |++++.|++.
T Consensus 1357 GQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~ 1436 (1490)
T TIGR01271 1357 GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQ 1436 (1490)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999998 45555666544 34699999999888 665 8999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++.+
T Consensus 1437 ~Ll~ 1440 (1490)
T TIGR01271 1437 KLLN 1440 (1490)
T ss_pred HHHc
Confidence 9874
No 349
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.91 E-value=1.7e-25 Score=206.84 Aligned_cols=195 Identities=16% Similarity=0.147 Sum_probs=148.3
Q ss_pred CCCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.+--++++++++.|..+ .++ .++ |++.+|+.++|+||||+||||++++|..++. -++|.|.++|.+.+
T Consensus 534 ~~G~i~fsnvtF~Y~p~k~vl-----~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 534 TQGKIEFSNVTFAYDPGKPVL-----SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNV 605 (790)
T ss_pred cCCeEEEEEeEEecCCCCcee-----ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHH
Confidence 33467888999999864 555 777 9999999999999999999999999999999 99999999998753
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH-----HHHHHHHHhc---cCCCCCC----CCCCc
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLR---NQGSVYA----PSFDH 185 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~l~---~~~~~~~----~~lSg 185 (287)
..||++|||...+. -|+..|+.++ .+.+.+.+ ++..+-+++- ++-+.++ -.|||
T Consensus 606 t~~SLRs~IGVVPQDtvLFN---dTI~yNIrya-----k~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSG 677 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFN---DTILYNIRYA-----KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSG 677 (790)
T ss_pred HHHHHHHhcCcccCcceeec---ceeeeheeec-----CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCC
Confidence 34999999976444 3888888764 33322221 2222222222 2222233 38999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH-HHh-----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ-RVL-----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~-rv~-----gr~v~~G~~~ 253 (287)
||||||++|+++...|.++++||.+..||. .++..+.++.. ..|+|.|.+..+.. ..+ |+++++|.-+
T Consensus 678 GEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~He 757 (790)
T KOG0056|consen 678 GEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHE 757 (790)
T ss_pred cchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHH
Confidence 999999999999999999999999999998 34455555543 46899999998877 322 9999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|++..
T Consensus 758 eLl~r 762 (790)
T KOG0056|consen 758 ELLKR 762 (790)
T ss_pred HHHhc
Confidence 98764
No 350
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=2.2e-24 Score=231.06 Aligned_cols=185 Identities=16% Similarity=0.200 Sum_probs=142.7
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccccCCCCCCc
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPD 124 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-G~i~~~~~~~~~ 124 (287)
+.++++++++.|+. +..+ +++ +.+++|+.++|+||+|||||||+++|.|+++ |++ |+|.+. .
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL-----~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l~-----~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTL-----SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVIR-----G 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCcee-----eceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEEc-----C
Confidence 35888999999974 3455 888 9999999999999999999999999999999 999 898754 3
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCCCC----CCCCCcccCCch
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGVGDPV 191 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~----~~~lSgG~~qrv 191 (287)
.++|++|++..+. -|++||+.++.. .+.++..++++ .+..+.+.. -..||||||||+
T Consensus 680 ~Iayv~Q~p~Lfn---gTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRI 749 (1622)
T PLN03130 680 TVAYVPQVSWIFN---ATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRV 749 (1622)
T ss_pred eEEEEcCccccCC---CCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHH
Confidence 5999999987554 599999987532 22333333333 222233333 337999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHHHH-----HHhh--cCceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWKDV-----SSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~~l-----~~~~--~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
++|+|+..+++++++|+++..+|.+.-+.+ .... ...|++||+++.+.. +++ |++++.|+.+++..
T Consensus 750 aLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 750 SMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999998543332 2222 235799999988776 555 89999999888754
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.6e-24 Score=180.75 Aligned_cols=199 Identities=19% Similarity=0.097 Sum_probs=143.4
Q ss_pred CccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~G~i~~~~~~~~-- 123 (287)
.+++++++.+.-+++ .++ +++ ++|++||+.+|+||||||||||+++|+|.- + +++|+|.++|.+..
T Consensus 2 ~~L~I~dLhv~v~~~keIL-----kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~---Vt~G~I~~~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEIL-----KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE---VTEGEILFDGEDILEL 73 (251)
T ss_pred ceeEEeeeEEEecCchhhh-----cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce---EecceEEECCcccccC
Confidence 367888999988885 777 999 999999999999999999999999999974 5 79999999997642
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHh-cCCC--CCchHHHHHHHHHHhc---cCCCCCCC-CCCcccCC
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP--WTFNPLLLLNCLKNLR---NQGSVYAP-SFDHGVGD 189 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~~--~~~~~~~~~~~l~~l~---~~~~~~~~-~lSgG~~q 189 (287)
.-+.+.+|.|.-.+- .++.+.+...... ++.. -....+++.+.++.++ ...++++. .||||||+
T Consensus 74 ~~~ERAr~GifLafQ~P~ei~G--V~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkK 151 (251)
T COG0396 74 SPDERARAGIFLAFQYPVEIPG--VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151 (251)
T ss_pred CHhHHHhcCCEEeecCCccCCC--eeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHH
Confidence 226677888764432 5555554443322 1111 1123455667777776 35577777 89999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHH----HHHhhcC---ceEEEeCHHHHHH------HHh--hccccCCChHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKD----VSSMFDE---KWFIEVDLDTAMQ------RVL--KRHISTGKPPD 254 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~----l~~~~~~---~i~vtHd~~~~~~------rv~--gr~v~~G~~~e 254 (287)
|..|...++..|++.|+|++=..+|-..++. +..+.+. .++|||....+.. .++ ||++..|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999777777777777777777777633333 3333333 4799999988876 222 999999998 7
Q ss_pred HHHHH
Q 023126 255 VAKWR 259 (287)
Q Consensus 255 v~~~~ 259 (287)
++...
T Consensus 231 l~~~l 235 (251)
T COG0396 231 LAEEL 235 (251)
T ss_pred HHHHH
Confidence 66543
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.91 E-value=3.6e-24 Score=227.09 Aligned_cols=184 Identities=12% Similarity=0.059 Sum_probs=137.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhccc-CCCCcccccCCCCC-------CceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVKP-------PDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~-~p~~G~i~~~~~~~-------~~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+++||+++|+||||||||||+|+|+|.+... .|++|+|.++|.+. +..++|++|++.+++. +||
T Consensus 78 ~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~--lTV 155 (1394)
T TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH--LTV 155 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC--CCH
Confidence 888 999999999999999999999999999986210 17899999988542 2348999999765543 899
Q ss_pred cccHHHHHHhcCC-------CCCchHHH-HHHHHHHhccC--CC-----CCCCCCCcccCCchhhhhhhccCccEEEEcC
Q 023126 144 MEDPKEAHARRGA-------PWTFNPLL-LLNCLKNLRNQ--GS-----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 208 (287)
Q Consensus 144 ~e~i~~~~~~~~~-------~~~~~~~~-~~~~l~~l~~~--~~-----~~~~~lSgG~~qrv~ia~al~~~a~~li~d~ 208 (287)
+|++.+....... ...+..++ ..++++.++.. .+ ..+..||||||||++||++++.+|+++++||
T Consensus 156 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDE 235 (1394)
T TIGR00956 156 GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDN 235 (1394)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeC
Confidence 9999987654311 11111122 24567777632 22 3456899999999999999999999999999
Q ss_pred cccCCCh----hhHHHHHHhhc----CceEEEeCH-HHHHH---HHh----hccccCCChHHHHHH
Q 023126 209 NYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 209 ~~lllDe----~~~~~l~~~~~----~~i~vtHd~-~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
++..||. .+.+.|+++.+ ..|+++|++ +.+.. +++ |+++..|+++++...
T Consensus 236 PTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~y 301 (1394)
T TIGR00956 236 ATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQY 301 (1394)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHH
Confidence 9999999 55666666653 236888996 45544 554 889999988876543
No 353
>PLN03140 ABC transporter G family member; Provisional
Probab=99.91 E-value=6.1e-24 Score=225.23 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=138.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCC-----CceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+++|++++|+||||||||||+|+|+|.++ |+ +|+|.++|... ++.++|++|++.+++ .+||
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~--~lTV 256 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVG--VMTV 256 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccccCCC--cCcH
Confidence 777 8999999999999999999999999999998 88 99999988542 356899999976554 4999
Q ss_pred cccHHHHHHhcCCCC----------Cc---------hH---------------HHHHHHHHHhccC-------CCCCCCC
Q 023126 144 MEDPKEAHARRGAPW----------TF---------NP---------------LLLLNCLKNLRNQ-------GSVYAPS 182 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~----------~~---------~~---------------~~~~~~l~~l~~~-------~~~~~~~ 182 (287)
+|++.+.....+... .+ +. ..+..+++.++.. .+..+..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999998765432110 00 00 1134567777732 2456789
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCH-HHHHH---HHh----hcc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDL-DTAMQ---RVL----KRH 246 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~-~~~~~---rv~----gr~ 246 (287)
||||||||+.+|.+++.+|+++++||++..||. .+.+.++++.+ ..|+++|++ +++.. +++ |++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999998 55566666543 235778886 45544 554 899
Q ss_pred ccCCChHHHHH
Q 023126 247 ISTGKPPDVAK 257 (287)
Q Consensus 247 v~~G~~~ev~~ 257 (287)
+..|+++++..
T Consensus 417 vy~G~~~~~~~ 427 (1470)
T PLN03140 417 VYQGPRDHILE 427 (1470)
T ss_pred EEeCCHHHHHH
Confidence 99998887764
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.90 E-value=1.1e-24 Score=230.95 Aligned_cols=186 Identities=15% Similarity=0.073 Sum_probs=138.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+++ +.+++|++++|+||||||||||+++|+|..... +.+|+|.++|.+. ++.++|++|++.+.+ .+|++|+
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~--~lTV~E~ 973 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSP--QVTVRES 973 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCC--CCcHHHH
Confidence 888 999999999999999999999999999986510 2689999988543 245899999976544 4899999
Q ss_pred HHHHHHhcCCCC----CchHHHHHHHHHHhcc--CCCCCC-----CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 147 PKEAHARRGAPW----TFNPLLLLNCLKNLRN--QGSVYA-----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 147 i~~~~~~~~~~~----~~~~~~~~~~l~~l~~--~~~~~~-----~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
+.+..... .+. .+..+.+.++++.++. ..+..+ ..||||||||++||++++.+|++|++|||+..||.
T Consensus 974 L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~ 1052 (1470)
T PLN03140 974 LIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1052 (1470)
T ss_pred HHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 99865432 221 1223456788887773 234443 58999999999999999999999999999999998
Q ss_pred ----hhHHHHHHhhcC---ceEEEeCHHH-HHH---HHh-----hccccCCChH---HHHHHHHHh
Q 023126 216 ----GVWKDVSSMFDE---KWFIEVDLDT-AMQ---RVL-----KRHISTGKPP---DVAKWRIEY 262 (287)
Q Consensus 216 ----~~~~~l~~~~~~---~i~vtHd~~~-~~~---rv~-----gr~v~~G~~~---ev~~~~~~~ 262 (287)
.+++.++++.+. +|+++|+++. +.. +++ |+++..|++. .-+..|+..
T Consensus 1053 ~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~ 1118 (1470)
T PLN03140 1053 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEA 1118 (1470)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHh
Confidence 455555555432 4689999984 333 443 5778888764 234445543
No 355
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=9.6e-25 Score=233.56 Aligned_cols=187 Identities=12% Similarity=0.089 Sum_probs=142.4
Q ss_pred ccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 51 VFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 51 ~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
.++++++++.|+. ..++ +++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++| .++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l-----~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~ 702 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTL-----NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVA 702 (1522)
T ss_pred cEEEEEeEEEcCCCCCcee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEE
Confidence 6888999999974 3456 888 9999999999999999999999999999999 9999999876 499
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---HHHhc---cC----CCCCCCCCCcccCCchhhhhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLR---NQ----GSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---l~~l~---~~----~~~~~~~lSgG~~qrv~ia~al 197 (287)
|++|++.. ++ .|+++|+.++.. + .....+++.+. .+.++ .+ .......||||||||+++|+|+
T Consensus 703 yv~Q~~~l-~~--~Ti~eNI~~g~~-~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl 775 (1522)
T TIGR00957 703 YVPQQAWI-QN--DSLRENILFGKA-L---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 775 (1522)
T ss_pred EEcCCccc-cC--CcHHHHhhcCCc-c---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHH
Confidence 99999764 33 699999986421 1 11112222221 22222 12 2345669999999999999999
Q ss_pred ccCccEEEEcCcccCCChhhHHHHHHhh---------cCceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMF---------DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~~~~~l~~~~---------~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
..+++++++|+++..+|.+..+.+.+.. ...|++||+++.+.. +++ |++++.|+.+++..
T Consensus 776 ~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 776 YSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred hcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999999999994444433221 134799999998876 444 88889999888754
No 356
>PLN03232 ABC transporter C family member; Provisional
Probab=99.90 E-value=2.1e-24 Score=230.58 Aligned_cols=186 Identities=15% Similarity=0.170 Sum_probs=140.9
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..++++++++.|.. ..++ +++ +.+++|+.++|+||+|||||||+++|+|+++ |++|.+.. .+..
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL-----~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~ 680 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTL-----SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGS 680 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCcee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCc
Confidence 35888999999974 3455 888 9999999999999999999999999999999 99987532 2345
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH---------hccCCCCC----CCCCCcccCCchh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVGDPVE 192 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~lSgG~~qrv~ 192 (287)
++|++|++..+. -|++||+.++.. .+.++..++++. +..+.+.. -..||||||||++
T Consensus 681 Iayv~Q~p~Lf~---gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIa 750 (1495)
T PLN03232 681 VAYVPQVSWIFN---ATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVS 750 (1495)
T ss_pred EEEEcCcccccc---ccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHH
Confidence 999999987554 599999987531 233333333332 22222332 3379999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHH-----HHhh--cCceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDV-----SSMF--DEKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l-----~~~~--~~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|+|+..+++++++|+++..+|.+.-+.+ .... .+.|++||+++.+.. +++ |++++.|+.+++..
T Consensus 751 LARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 751 MARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999999997443322 2222 235799999998766 554 89999999888764
No 357
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=1.5e-23 Score=175.76 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=94.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---ceeEEEeCCCCCCCcccCCccccHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---DVATVLPMDGFHLYLSQLDAMEDPK 148 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---~~i~~v~qd~~~~~~~~ltv~e~i~ 148 (287)
+++ +++++|++++|+||||||||||+++|. +++|++.+++.... ..++|++|
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~v~~~~~~~~~~~~~~~~~~q----------------- 67 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGKARLISFLPKFSRNKLIFIDQ----------------- 67 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCcEEECCcccccccccEEEEhH-----------------
Confidence 788 999999999999999999999999884 46787766543110 01222211
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC--ccEEEEcCcccCCChh----hHH
Q 023126 149 EAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGG----VWK 219 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~--a~~li~d~~~lllDe~----~~~ 219 (287)
.+.++.++. ..+.++.+||+||+||+++|++++.+ |+++++||++..+|.. +.+
T Consensus 68 -----------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~ 130 (176)
T cd03238 68 -----------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE 130 (176)
T ss_pred -----------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 345556663 25678889999999999999999999 9999999999999983 344
Q ss_pred HHHHhhc---CceEEEeCHHHHH
Q 023126 220 DVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 220 ~l~~~~~---~~i~vtHd~~~~~ 239 (287)
.++++.+ .+|++||+++++.
T Consensus 131 ~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 131 VIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHH
Confidence 4444432 2469999999863
No 358
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.2e-23 Score=173.26 Aligned_cols=128 Identities=17% Similarity=0.184 Sum_probs=102.3
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------c
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------D 124 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------~ 124 (287)
++++.+.|.+..++ +++ +.+.+|++++|+|+||||||||+++|+|+++ |++|++.+++.... .
T Consensus 2 ~~~~~~~~~~~~~l-----~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~ 73 (157)
T cd00267 2 IENLSFRYGGRTAL-----DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRR 73 (157)
T ss_pred eEEEEEEeCCeeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHh
Confidence 45667777665555 777 9999999999999999999999999999999 99999888764221 1
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
.++|++| ||+||+||++++++++.+++++
T Consensus 74 ~i~~~~q---------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 74 RIGYVPQ---------------------------------------------------LSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred ceEEEee---------------------------------------------------CCHHHHHHHHHHHHHhcCCCEE
Confidence 1233322 9999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|+++..+|. .+++.+.+... ..+++||+++++..
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999999998 34444544433 34689999998765
No 359
>PLN03073 ABC transporter F family; Provisional
Probab=99.89 E-value=2e-23 Score=208.46 Aligned_cols=188 Identities=11% Similarity=0.028 Sum_probs=126.5
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
...++.++++++.|+++.++ +++ ++|.+|+++||+|+||||||||+++|+|......|++|+|
T Consensus 174 ~~~~I~i~nls~~y~~~~ll-----~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I----------- 237 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLI-----VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI----------- 237 (718)
T ss_pred CceeEEEceEEEEeCCCEEE-----ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE-----------
Confidence 34578999999999988777 999 9999999999999999999999999999641001666654
Q ss_pred EEEeCCCCCCCcccCCcccc---------------HHHHHH-----------------hcCCCCC---------------
Q 023126 127 TVLPMDGFHLYLSQLDAMED---------------PKEAHA-----------------RRGAPWT--------------- 159 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~---------------i~~~~~-----------------~~~~~~~--------------- 159 (287)
.|++|+... . ..++.+. +.+... ..+.+..
T Consensus 238 ~~~~Q~~~g-~--~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 314 (718)
T PLN03073 238 LHVEQEVVG-D--DTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLEL 314 (718)
T ss_pred EEEeccCCC-C--CCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHh
Confidence 444444211 0 1222111 000000 0000111
Q ss_pred ----chHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCc
Q 023126 160 ----FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEK 228 (287)
Q Consensus 160 ----~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~ 228 (287)
....++.++|..++.. .++++.+|||||+||++||++++.+|++|++|||+..||......+.+++ ...
T Consensus 315 ~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tv 394 (718)
T PLN03073 315 IDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTF 394 (718)
T ss_pred cCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 1123444555555532 45678899999999999999999999999999999999994444443333 345
Q ss_pred eEEEeCHHHHHH---HHh----hccc-cCCChHH
Q 023126 229 WFIEVDLDTAMQ---RVL----KRHI-STGKPPD 254 (287)
Q Consensus 229 i~vtHd~~~~~~---rv~----gr~v-~~G~~~e 254 (287)
|++|||++.+.. +++ |++. ..|...+
T Consensus 395 iivsHd~~~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 395 IVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 799999999876 444 6665 4566544
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=7.8e-24 Score=226.05 Aligned_cols=170 Identities=12% Similarity=0.154 Sum_probs=130.0
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.++| .++|++|++..+ + .|+++|+.++.
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~~~l~-~--~Ti~eNI~~g~ 511 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQTSWIM-P--GTIKDNIIFGL 511 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCCCccC-C--ccHHHHHHhcc
Confidence 788 9999999999999999999999999999999 9999999876 399999997643 3 49999998753
Q ss_pred HhcCCCCCchHHHH------HHHHHHhccC----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 152 ARRGAPWTFNPLLL------LNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 152 ~~~~~~~~~~~~~~------~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
. +. ......+ .+.++.+..+ .......||||||||+++|+|+..+|+++++|+++..+|.+..+.+
T Consensus 512 ~-~~---~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i 587 (1490)
T TIGR01271 512 S-YD---EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587 (1490)
T ss_pred c-cc---hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2 11 1111111 2233333222 2335669999999999999999999999999999999999544444
Q ss_pred HH-----hhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 222 SS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 222 ~~-----~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
.+ +.. ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 588 ~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 33 222 34799999998766 444 78888899888754
No 361
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.6e-23 Score=169.09 Aligned_cols=184 Identities=18% Similarity=0.089 Sum_probs=134.9
Q ss_pred ccccCccccccccc--chh-hhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----
Q 023126 51 VFGKTRSLVQNKTS--LKV-LCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----- 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~-v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~----- 121 (287)
.+.+++++|.|--. ..+ +... +++ ++++.||++++-||||||||||+|+|.|.|. ||+|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~-~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVL-RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL 79 (235)
T ss_pred eeeeecchhheEeeecCCEEeeee-eceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence 45667777777422 111 2223 555 9999999999999999999999999999999 999998764321
Q ss_pred -----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCccc
Q 023126 122 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 187 (287)
Q Consensus 122 -----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~ 187 (287)
.+..+||++|---..+ ..+..+.++......|.+......++..+|.++... ....+.++||||
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviP--RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE 157 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIP--RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE 157 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhcc--CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence 1234899988643333 356677777777777877666677888899888732 345677999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~ 240 (287)
||||.||+.++.+-.+|++|+++.-||. .+.+.+.+....+ +=|=||.+....
T Consensus 158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~ 217 (235)
T COG4778 158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREA 217 (235)
T ss_pred heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHH
Confidence 9999999999999999999999999998 3444444443332 346688776544
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.88 E-value=5e-23 Score=220.29 Aligned_cols=170 Identities=15% Similarity=0.130 Sum_probs=128.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+. ..++|++|++.. ++ .|+++|+.++.
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~~l-~~--~Tv~enI~~~~ 745 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQAWI-MN--ATVRGNILFFD 745 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCCcc-CC--CcHHHHHHcCC
Confidence 788 9999999999999999999999999999999 999998764 359999999764 33 69999998642
Q ss_pred HhcCCCCCchHH------HHHHHHHHhc----cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 152 ARRGAPWTFNPL------LLLNCLKNLR----NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 152 ~~~~~~~~~~~~------~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
.. .....+ .+.+.++.+. ...+.+..+||||||||+++|+|+..+++++++|+++..||....+.+
T Consensus 746 ~~----~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 746 EE----DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred hh----hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 10 000111 1233344442 123456779999999999999999999999999999999997433322
Q ss_pred HH-----hhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 222 SS-----MFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 222 ~~-----~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
.+ ... ..|++||+++.+.. +++ |++++.|+.+++..
T Consensus 822 ~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 822 VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 21 222 34799999999866 554 78888999888754
No 363
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.88 E-value=5.5e-24 Score=170.85 Aligned_cols=120 Identities=20% Similarity=0.196 Sum_probs=96.0
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------ceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+.+|++++|+|+||||||||+++|+|.++ |++|.|.+++.+.. ..++|++|+..... .+|+
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~tv 76 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFP--GLTV 76 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHT--TSBH
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeeccccc---cccccccccccccccccccccccccccccccccccc--cccc
Confidence 456 8999999999999999999999999999999 99999988875432 34899999954333 3677
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCC----CCCCCCcccCCchhhhhhhccCccEEEEcCcc
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY 210 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~----~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~ 210 (287)
.+| ...+++.++++.++. ..+. +...||+||+||+++|++++.+++++++|+|+
T Consensus 77 ~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 77 REN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred ccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 776 233456666666662 2233 44899999999999999999999999999986
No 364
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.87 E-value=3.3e-22 Score=196.77 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=144.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----CCceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-----~~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+++ ..+++||+.||+||+|||||||+++|+|........+|+|.+||.. .+...+|+.||+...+. +||+|+
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~--LTV~Et 124 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT--LTVRET 124 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc--ccHHHH
Confidence 888 8999999999999999999999999999987322468999999943 24568999999876654 999999
Q ss_pred HHHHHHhcCC---CCCchHHHHHHHHHHhccC--CCCCC-----CCCCcccCCchhhhhhhccCccEEEEcCcccCCCh-
Q 023126 147 PKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 215 (287)
Q Consensus 147 i~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~-----~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe- 215 (287)
+.+....+-. ...+..+++++++++++.. .+..+ +.+|||||+||++|.-++.+|.+|++|||+..||-
T Consensus 125 L~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~ 204 (613)
T KOG0061|consen 125 LRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSF 204 (613)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchh
Confidence 9997665421 2245567889999999843 34444 46999999999999999999999999999999998
Q ss_pred ---hhHHHHHHhhcC--c-eEEEeCHHHH-HH---HHh----hccccCCChHHHHHHHHH
Q 023126 216 ---GVWKDVSSMFDE--K-WFIEVDLDTA-MQ---RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 216 ---~~~~~l~~~~~~--~-i~vtHd~~~~-~~---rv~----gr~v~~G~~~ev~~~~~~ 261 (287)
.+.+.|+++... + |+.-|.+.-- .+ +++ |+.+..|++++... ++.
T Consensus 205 sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~-ff~ 263 (613)
T KOG0061|consen 205 SALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE-FFS 263 (613)
T ss_pred hHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH-HHH
Confidence 455556665543 3 3555777643 33 555 89999999877554 444
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=3.9e-22 Score=173.95 Aligned_cols=164 Identities=13% Similarity=0.041 Sum_probs=96.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHH-HHHHHHhccc-----CCCCc----ccccCC--CCCCceeEEEeCCCCCCCcc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLA-AEVVRRINKI-----WPQKA----SSFDSQ--VKPPDVATVLPMDGFHLYLS 139 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLl-k~L~G~l~~~-----~p~~G----~i~~~~--~~~~~~i~~v~qd~~~~~~~ 139 (287)
+++ +++++||++||+|+||||||||+ ..|...-+.. .|..+ .+.... ........+..+++....++
T Consensus 12 ~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T cd03270 12 KNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTSRNP 91 (226)
T ss_pred ccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCCCCC
Confidence 777 99999999999999999999996 3333110000 01101 010000 00111233444444333222
Q ss_pred cCCccc---cHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCccc
Q 023126 140 QLDAME---DPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYL 211 (287)
Q Consensus 140 ~ltv~e---~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~l 211 (287)
..++.. ...+....+ ... ......+.++.++. ..+.++.+|||||+||+++|++++.+| +++++|||+.
T Consensus 92 ~~~v~~~~~~~~~~~~~~--~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~ 168 (226)
T cd03270 92 RSTVGTVTEIYDYLRLLF--ARV-GIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSI 168 (226)
T ss_pred CccHHHHHHHHHHHHHHh--hhh-hHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence 233321 111111111 111 12222567777773 357788899999999999999999887 6999999999
Q ss_pred CCChh----hHHHHHHhhc---CceEEEeCHHHHH
Q 023126 212 FLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 212 llDe~----~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
.+|.. +.+.+.++.+ ..|++|||++++.
T Consensus 169 gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~ 203 (226)
T cd03270 169 GLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR 203 (226)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH
Confidence 99983 4444444432 2469999999863
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=8.8e-22 Score=203.65 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=155.9
Q ss_pred CCCccccCccccccccc--chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 48 AQPVFGKTRSLVQNKTS--LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.+--++++|++++|... .++ +++ +.|++||.|||+|..|||||||+.+|-.+.+ |.+|+|.++|.+.
T Consensus 1135 ~~G~I~f~~~~~RYrp~lp~VL-----k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNLPLVL-----KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISK 1206 (1381)
T ss_pred CCCeEEEEEeEEEeCCCCcchh-----cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeeccc
Confidence 33468899999999875 566 888 9999999999999999999999999999999 9999999999765
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCCC----CC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYAP----SF 183 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~~----~l 183 (287)
+.+++++||||..+. =|++.|+.=. ..+..+.+-++|+... .+.+..+. ++
T Consensus 1207 igL~dLRsrlsIIPQdPvLFs---GTvR~NLDPf-------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1207 IGLHDLRSRLSIIPQDPVLFS---GTVRFNLDPF-------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred ccHHHHHhcCeeeCCCCceec---CccccccCcc-------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence 345899999987655 3888887521 1223334444444332 33444443 79
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH--HHh----hccccCCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ--RVL----KRHISTGK 251 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~--rv~----gr~v~~G~ 251 (287)
|-||||.+++|+|+..+.++|++||.+.-.|. -+++.|++.+.. ++.|-|.++.++. |++ |+++|.|+
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCC
Confidence 99999999999999999999999999999998 466777777754 3578999999999 776 99999999
Q ss_pred hHHHHHH
Q 023126 252 PPDVAKW 258 (287)
Q Consensus 252 ~~ev~~~ 258 (287)
|.++..+
T Consensus 1357 P~~Ll~~ 1363 (1381)
T KOG0054|consen 1357 PAELLSD 1363 (1381)
T ss_pred hHHHHhC
Confidence 9998764
No 367
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-22 Score=185.47 Aligned_cols=191 Identities=14% Similarity=0.091 Sum_probs=143.2
Q ss_pred cccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 52 FGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 52 ~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+.+.++.+.|.. +..+ .++ +.+.+|+.++++|++|+||||++++|..++. +++|.|.++|.+.+
T Consensus 263 v~F~~V~F~y~~~r~iL-----~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~s 334 (497)
T COG5265 263 VAFINVSFAYDPRRPIL-----NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQS 334 (497)
T ss_pred EEEEEEEeeccccchhh-----cCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHH
Confidence 456677888875 4555 777 9999999999999999999999999999999 99999999997753
Q ss_pred --ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH--HH------HHHHHHhccCCCCCCC----CCCcccCC
Q 023126 124 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL--LL------LNCLKNLRNQGSVYAP----SFDHGVGD 189 (287)
Q Consensus 124 --~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~--~~------~~~l~~l~~~~~~~~~----~lSgG~~q 189 (287)
+.||++|||...+ + -|...|+.++ .+.+-+.+ .+ ...++.+-++.+..+. .|||||||
T Consensus 335 lR~aIg~VPQDtvLF-N--Dti~yni~yg-----r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 335 LRRAIGIVPQDTVLF-N--DTIAYNIKYG-----RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHHhCcCcccceeh-h--hhHHHHHhcc-----CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 3489999996543 3 3666666653 33222221 11 1222233344444444 79999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
||++|+++..+|+++++||-+..||.+ ++..+++... +.+++.|-+..+.. .++ |+++++|+-++++.
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 999999999999999999999999983 4444555443 35899999998877 444 99999999999876
Q ss_pred H
Q 023126 258 W 258 (287)
Q Consensus 258 ~ 258 (287)
.
T Consensus 487 ~ 487 (497)
T COG5265 487 A 487 (497)
T ss_pred c
Confidence 4
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.86 E-value=2.1e-21 Score=165.94 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=103.6
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------cccccCCCCC-----CceeEEEeCCCCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---------ASSFDSQVKP-----PDVATVLPMDGFHLY 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~---------G~i~~~~~~~-----~~~i~~v~qd~~~~~ 137 (287)
+++ +.+.+| +++|+||||||||||+++|+|+++ |.. |++.+.+... ...+++++|++...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 444 789999 999999999999999999999986 553 3455554432 346899999864321
Q ss_pred cccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCC
Q 023126 138 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFL 213 (287)
Q Consensus 138 ~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lll 213 (287)
+.. ..+++.++++. ....+..+..||+||+||+++|++++ .+++++++||++..+
T Consensus 90 -----------------~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 90 -----------------SII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----------------eEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 110 12355566655 44556778899999999999999986 467999999999999
Q ss_pred Ch----hhHHHHHHhhc--CceEEEeCHHHHH
Q 023126 214 DG----GVWKDVSSMFD--EKWFIEVDLDTAM 239 (287)
Q Consensus 214 De----~~~~~l~~~~~--~~i~vtHd~~~~~ 239 (287)
|+ .+++.++++.+ ..|++||+++.+.
T Consensus 149 D~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~ 180 (197)
T cd03278 149 DDANVERFARLLKEFSKETQFIVITHRKGTME 180 (197)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEEECCHHHHh
Confidence 98 34444444432 2469999998763
No 369
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.85 E-value=7.8e-21 Score=164.99 Aligned_cols=187 Identities=23% Similarity=0.313 Sum_probs=138.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||.|+||||||||++.|++.+. +..+ ...+.++++|+++.....+ .+. . .....+.+.+.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~---~~~~---------~~~v~vi~~D~f~~~~~~~--~~~-~-~~~~~g~p~~~d~ 64 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS---RWPD---------HPNVELITTDGFLYPNKEL--IER-G-LMDRKGFPESYDM 64 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh---hcCC---------CCcEEEEecCcccCcHHHH--HHh-h-hhhcCCCcccCCH
Confidence 589999999999999999999997 4211 1126789999886553211 111 1 1123566778888
Q ss_pred HHHHHHHHHhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh-hhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 163 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 163 ~~~~~~l~~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe-~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+.+.+.|..+.. .....+|.||.....+..-......+++++|+|+.+++.++ .-|..+.++++..||++-+.+++..
T Consensus 65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~ 144 (220)
T cd02025 65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEK 144 (220)
T ss_pred HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHH
Confidence 888899998887 45778899999998887765444667899999999999985 5678899999999999999998766
Q ss_pred HHhhc----------ccc------CCChHHHH----HHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 241 RVLKR----------HIS------TGKPPDVA----KWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 241 rv~gr----------~v~------~G~~~ev~----~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
|++.| ... .|-+.+.. ...|....+|+++ ||.|++++||+|++..
T Consensus 145 rl~~R~~r~~~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 145 WYIKRFLKLRETAFSDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred HHHHHHHHHHHHHHhCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 44422 221 34433332 3346668999994 9999999999999754
No 370
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=9.7e-22 Score=203.32 Aligned_cols=188 Identities=12% Similarity=0.147 Sum_probs=144.8
Q ss_pred CCCCccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~ 122 (287)
..++.+++++.++..+. ...+ +++ +.+++|+.+||+|+-|||||+|+.+|.|.++ ..+|++.++|.
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL-----~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-- 583 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTL-----KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-- 583 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccc-----cceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe--
Confidence 44556777777777654 2245 788 9999999999999999999999999999999 99999998875
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHH---------HhccCCC----CCCCCCCcccCC
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGVGD 189 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~----~~~~~lSgG~~q 189 (287)
++|++|.+-.+. -|++|||.|+.. ++.++..+.++ .+..+.. .+--+|||||||
T Consensus 584 ---iaYv~Q~pWI~n---gTvreNILFG~~-------~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKq 650 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQN---GTVRENILFGSP-------YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQ 650 (1381)
T ss_pred ---EEEeccccHhhC---CcHHHhhhcCcc-------ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHH
Confidence 899999975444 599999987532 23344333333 2222222 234489999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHHHH-----Hhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~l~-----~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~ 256 (287)
|+++|+|+-.++++.++|.++..+|.++-+.+- .+.+ ..|++||.++...+ +++ |++.+.|+.+|+.
T Consensus 651 RIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 651 RISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred HHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 999999999999999999999999995443333 3333 35799999988877 554 8999999999987
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
+
T Consensus 731 ~ 731 (1381)
T KOG0054|consen 731 K 731 (1381)
T ss_pred h
Confidence 4
No 371
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.84 E-value=2.4e-20 Score=159.03 Aligned_cols=182 Identities=28% Similarity=0.400 Sum_probs=144.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
+.-++||.|+|||||||+++.|.-.++ . ..+++++||+|+......+..++ ...++.+|.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---~-------------~~~~~I~~D~YYk~~~~~~~~~~---~~~n~d~p~A 67 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG---V-------------EKVVVISLDDYYKDQSHLPFEER---NKINYDHPEA 67 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC---c-------------CcceEeeccccccchhhcCHhhc---CCcCccChhh
Confidence 456899999999999999999999986 2 13788999998776544333222 2245677889
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHH
Q 023126 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
.+.+.+.+.|..+..+.....|.||.-+.-|.. -.....+.+++|+||-+++.| +.++++++..||++.|.+...
T Consensus 68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d----~~lr~~~d~kIfvdtd~D~Rl 142 (218)
T COG0572 68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYD----ERLRDLMDLKIFVDTDADVRL 142 (218)
T ss_pred hcHHHHHHHHHHHHcCCcccccccchhcccccC-CccccCCCcEEEEeccccccc----HHHHhhcCEEEEEeCCccHHH
Confidence 999999999999988888888888887777764 222456689999999999999 688999999999999999988
Q ss_pred HHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 240 QRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 240 ~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
.|.+.|.+ ++|...+-+-..|....+|+++ ||+|++++||+|+|..
T Consensus 143 iRri~RD~~~rg~~~e~vi~qy~~~vkp~~~~fIeptk~~ADiiip~~ 190 (218)
T COG0572 143 IRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTKKYADIIIPSG 190 (218)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhChhhhhccCcccccceEEeecC
Confidence 87776655 5776666544455567889988 9999999999999864
No 372
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.83 E-value=2.2e-20 Score=174.94 Aligned_cols=179 Identities=15% Similarity=0.047 Sum_probs=134.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
.+.|++-++++.++|.+.. -+|.++ |.++.++.++++||||+|||||+|++.|.+. |+.|.+.......
T Consensus 385 ~p~pvi~~~nv~F~y~~~~----~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~--- 454 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDNP----MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNK--- 454 (614)
T ss_pred CCCCeEEEeccccCCCCcc----hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---ccccccccccccc---
Confidence 5678999999999998775 235777 9999999999999999999999999999999 9999986543322
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++++.|......+=+.++.++ ....+. .....+.+..+|.+++. ....+..+||.|||.||.+|.....+|.
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~---~~~~~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~ 529 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEF---MMPKFP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH 529 (614)
T ss_pred chhhhhhhHhhcCcchhHHHH---HHHhcc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence 455555532211111233332 222222 23456677888888884 3456788999999999999999999999
Q ss_pred EEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++|+++-.||-+....+.+... .+|++|||.-++.+
T Consensus 530 lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~q 571 (614)
T KOG0927|consen 530 LLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQ 571 (614)
T ss_pred EEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHH
Confidence 999999999999865555555443 45799999988877
No 373
>PTZ00301 uridine kinase; Provisional
Probab=99.83 E-value=1.1e-19 Score=156.37 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=138.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~ 161 (287)
-+|||.|++|||||||++.|...+. -..| ...+.++++|+|+.....+... ......++.|.+.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~~---------~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D 68 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM---AHCG---------PVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE 68 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH---hhcC---------CCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence 4899999999999999999887653 1111 1225688999887654333221 11234667788999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHH
Q 023126 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQR 241 (287)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~r 241 (287)
.+.+.+.|..+..+.....|.|+.....|..- ...+.+.+++|+||.+++.+ ..+.++++..||++.+.++.+.|
T Consensus 69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~----~~l~~l~D~~ifvd~~~d~~~~R 143 (210)
T PTZ00301 69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTN----AELRNEMDCLIFVDTPLDICLIR 143 (210)
T ss_pred HHHHHHHHHHHHcCCcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCC----HHHHHhCCEEEEEeCChhHHHHH
Confidence 99999999999877777888888776666542 23345679999999999877 47788899999999999999998
Q ss_pred Hhhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 242 VLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 242 v~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
.+.|.+. +|.+.+-+...|.....+++. ||.|++.+||+|++..
T Consensus 144 r~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~ 189 (210)
T PTZ00301 144 RAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSW 189 (210)
T ss_pred HHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCC
Confidence 8888774 788777666655665555555 9999999999999854
No 374
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.2e-20 Score=171.11 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=126.4
Q ss_pred CccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc---
Q 023126 50 PVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--- 124 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--- 124 (287)
.-++++++...|.+. +.+ +.+ +++++||+|-|+|.||||||||++.|.|+++ |++|+|.++|++...
T Consensus 321 ~~lelrnvrfay~~~~Fhv-----gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~l 392 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHV-----GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQL 392 (546)
T ss_pred cceeeeeeeeccCccccee-----cceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCH
Confidence 357888888888765 677 888 9999999999999999999999999999999 999999999976421
Q ss_pred -----eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------CCCCCCCCCCcccCCchh
Q 023126 125 -----VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 125 -----~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------~~~~~~~~lSgG~~qrv~ 192 (287)
.++-++-| +++++ ...+.......+.+..+|+++.. ......-.||.|||+|++
T Consensus 393 edYR~LfSavFsD-yhLF~-------------~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlA 458 (546)
T COG4615 393 EDYRKLFSAVFSD-YHLFD-------------QLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLA 458 (546)
T ss_pred HHHHHHHHHHhhh-HhhhH-------------hhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHH
Confidence 12223323 22222 22222222345566677776662 122234489999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChh--------hHHHHHHhhcCceEEEeCHHHHHH--HHh----hccccC
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGG--------VWKDVSSMFDEKWFIEVDLDTAMQ--RVL----KRHIST 249 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~--------~~~~l~~~~~~~i~vtHd~~~~~~--rv~----gr~v~~ 249 (287)
+-.|+..+-.++++|||-.=-|+. .+..+++.-++++.||||-.--.. |++ |++++.
T Consensus 459 ll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 459 LLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999998888883 223333444445689999764333 555 777754
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.82 E-value=1.1e-20 Score=154.57 Aligned_cols=172 Identities=19% Similarity=0.156 Sum_probs=123.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------ceeEEEeCCCCCCCcccCCccccH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQLDAMEDP 147 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------~~i~~v~qd~~~~~~~~ltv~e~i 147 (287)
..+..||++-++||||||||||+..++|++ |-+|+|.++|.+.. +.-+|+.|+....+ .|.|+..+
T Consensus 20 ~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f--~mpV~~YL 93 (248)
T COG4138 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPF--AMPVWHYL 93 (248)
T ss_pred cccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcc--hhhhhhhh
Confidence 578999999999999999999999999998 88999999987642 23578877755333 36776655
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh-------ccCccEEEEcCcccCCChh--
Q 023126 148 KEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV-------GLQHKVVIVDGNYLFLDGG-- 216 (287)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al-------~~~a~~li~d~~~lllDe~-- 216 (287)
.+. .|.......+.++...++ +...+.+.+|||||.|||-+|... -+.++.|+.|+++.-||-.
T Consensus 94 ~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~ 168 (248)
T COG4138 94 TLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ 168 (248)
T ss_pred hhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH
Confidence 431 232222333444444444 566678889999999999997653 3356889999999999972
Q ss_pred --hHHHHHHhhcC---ceEEEeCHHHHHH-----HHh--hccccCCChHHHHHH
Q 023126 217 --VWKDVSSMFDE---KWFIEVDLDTAMQ-----RVL--KRHISTGKPPDVAKW 258 (287)
Q Consensus 217 --~~~~l~~~~~~---~i~vtHd~~~~~~-----rv~--gr~v~~G~~~ev~~~ 258 (287)
+-+.+..++.. +|+.+||++.-.+ +.+ |++...|..+|++..
T Consensus 169 ~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 169 SALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred HHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 23344445544 3688999998776 333 788899999887653
No 376
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.82 E-value=9.3e-20 Score=163.57 Aligned_cols=192 Identities=21% Similarity=0.319 Sum_probs=141.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
+.-.++||.|+||||||||+++|.+++.. +|++|. +.++++|+|+.+...+ +... ....++.|.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g~-----------V~vi~~D~f~~~~~~l---~~~g-~~~~~g~P~ 123 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHRK-----------VELITTDGFLHPNQVL---KERN-LMKKKGFPE 123 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCCc-----------eEEEecccccccHHHH---HHcC-CccccCCCh
Confidence 34579999999999999999999999862 244443 5678899887653211 1111 123456788
Q ss_pred CchHHHHHHHHHHhccCCC-CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh------hhHHHHHHhhcCceEE
Q 023126 159 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKWFI 231 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~-~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe------~~~~~l~~~~~~~i~v 231 (287)
+.+.+.+.+.+..+..+.. ..+|.||.-...++.-....+.+++++|+||.+++.++ ..|..+.++++..||+
T Consensus 124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~Iyv 203 (290)
T TIGR00554 124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYV 203 (290)
T ss_pred hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEE
Confidence 8898888999988887654 78889998887777654445578999999999998653 4588889999999999
Q ss_pred EeCHHHHHHHHhhccc-----c-----------CCChH-HH---HHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 232 EVDLDTAMQRVLKRHI-----S-----------TGKPP-DV---AKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 232 tHd~~~~~~rv~gr~v-----~-----------~G~~~-ev---~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
.-|.+.+.+|.+.|.. + .|-++ +. ..+.|.....++.. ||+|++.+||+|+++-.
T Consensus 204 Da~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 204 DAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred ECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCC
Confidence 9999998876553321 1 12222 32 23456777788885 99999999999998654
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=1.7e-19 Score=159.70 Aligned_cols=157 Identities=9% Similarity=0.059 Sum_probs=110.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccccCCC-C----------CCceeEEEeCCCCC-------CCcccC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQV-K----------PPDVATVLPMDGFH-------LYLSQL 141 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-G~i~~~~~-~----------~~~~i~~v~qd~~~-------~~~~~l 141 (287)
..+++|+||||||||||+++|++++. ++. |+++..+. + ....+++++|++.. ...+.+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 55889999999999999999999998 763 45554432 1 12358889988521 123357
Q ss_pred CccccHHHHHHhcC-C-CCCchHHHHHHHHHHhccCC----------------------CCCCCCCCcccCCchhhhhhh
Q 023126 142 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 142 tv~e~i~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~----------------------~~~~~~lSgG~~qrv~ia~al 197 (287)
++.+++........ . .+....+++.+.|+.++... +.++.+||+||+||+++|+++
T Consensus 102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 88888765432111 1 12234567788888887431 256779999999999999998
Q ss_pred c----cCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHHHH
Q 023126 198 G----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTAMQ 240 (287)
Q Consensus 198 ~----~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~~~ 240 (287)
+ .+++++++||++..+|. .+++.++++... .|++||+.+....
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~ 234 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNN 234 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh
Confidence 7 57899999999999998 445555555433 4799999655543
No 378
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.5e-19 Score=164.35 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=137.2
Q ss_pred cchhhhhccCCCCccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 38 SFSWIRRNANAQPVFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
.|.++..+-..-|++.+.++++.| |....+ ..+ |.|.--..+||+||||.|||||+++|.|.+. |+.|+.
T Consensus 573 kF~FPep~~L~PPvLGlH~VtFgy~gqkpLF-----kkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~ 644 (807)
T KOG0066|consen 573 KFQFPEPTKLNPPVLGLHDVTFGYPGQKPLF-----KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGEL 644 (807)
T ss_pred EEecCCCCCCCCCeeecccccccCCCCCchh-----hcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchh
Confidence 344444433566899999999999 555666 677 8888889999999999999999999999999 999997
Q ss_pred ccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCch
Q 023126 116 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 116 ~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv 191 (287)
+-+.. ..||++.|... ..++..+..... .+.+.+| .+.++..|..+|. .....+..|||||+.||
T Consensus 645 RKnhr---L~iG~FdQh~~----E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRV 713 (807)
T KOG0066|consen 645 RKNHR---LRIGWFDQHAN----EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARV 713 (807)
T ss_pred hccce---eeeechhhhhH----HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHH
Confidence 75543 34888777632 234555554433 3344443 4556677777773 33467889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChhhHH----HHHHhhcCceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~~~~----~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++|-.-...|++||+|+++--||-+.+. .|.+....+|+||||...+.+
T Consensus 714 alaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~e 766 (807)
T KOG0066|consen 714 ALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVE 766 (807)
T ss_pred HHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeee
Confidence 9988888899999999999999975444 444444557899999877655
No 379
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=1.8e-19 Score=166.06 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=118.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
+.+++-.++.+.||+. .+ ..- =.+..||++|++||||-|||||+++|+|.++ |++|. .....++
T Consensus 340 ~~lv~y~~~~k~~g~F-~L-----~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~------~~~~~vS 404 (591)
T COG1245 340 DTLVEYPDLKKTYGDF-KL-----EVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS------EEDLKVS 404 (591)
T ss_pred ceeeecchheeecCce-EE-----EecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC------CccceEe
Confidence 4456666777777732 22 111 3577889999999999999999999999999 99997 1223477
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEE
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li 205 (287)
|=||--. +....||.+.+....... ....+ .-.+++..+. ...++++..|||||.|||+||.+|..+|++.+
T Consensus 405 yKPQyI~--~~~~gtV~~~l~~~~~~~-~~~s~---~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl 478 (591)
T COG1245 405 YKPQYIS--PDYDGTVEDLLRSAIRSA-FGSSY---FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYL 478 (591)
T ss_pred ecceeec--CCCCCcHHHHHHHhhhhh-cccch---hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEE
Confidence 8777533 333468877655432221 11111 1123333333 45678999999999999999999999999999
Q ss_pred EcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 206 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 206 ~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
+|++-..||-+ ..+.++.... ..++|.||+-.+-.
T Consensus 479 lDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dy 521 (591)
T COG1245 479 LDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDY 521 (591)
T ss_pred ecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhh
Confidence 99999999972 2344444433 23689999887655
No 380
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.78 E-value=1e-19 Score=155.04 Aligned_cols=185 Identities=31% Similarity=0.477 Sum_probs=128.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH--HHhcCCCCCc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF 160 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~--~~~~~~~~~~ 160 (287)
+|||.|++|||||||++.|...+. . .|. .....+.++.+|.++... ...+.-... ...++.+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~---~-~~~------~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~ 67 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN---K-RGI------PAMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF 67 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---T-CTT------TCCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---c-cCc------CccceeEEEeeccccccc---chhhHhhccccccCCCCcccc
Confidence 689999999999999999999996 2 111 000125677777664321 110100000 1123456778
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+.+.+.+.|..+........|.|+.....+.. ...+..+++++|+||.++++|+. ++++++..||+..+.++.+.
T Consensus 68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~ifld~~~~~~l~ 142 (194)
T PF00485_consen 68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLKIFLDADEDLRLE 142 (194)
T ss_dssp SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeEEEecccHHHHHH
Confidence 88899999999887777777888877776666 23345678999999999999954 88899999999999999999
Q ss_pred HHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 241 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 241 rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
|.+.|.+ ++|...+.+.++|. ...+.+. ||.|++++||+|+++..
T Consensus 143 Rri~RD~~~rG~~~~~~~~~~~-~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 143 RRIQRDVAERGRSPEEVIAQYE-RVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHHHHS-S-HHHHHHHHH-THHHHHHHCTGGGGGG-SEEEESCT
T ss_pred HHhhhhccccCCcceeEEEEee-cCChhhhhheeccccccEEEECCCC
Confidence 8887766 57876665555555 5566666 99999999999999864
No 381
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.78 E-value=5.5e-18 Score=148.09 Aligned_cols=190 Identities=39% Similarity=0.658 Sum_probs=142.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE-EeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~-v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.+..++||+|+||||||||++.|+++++ +++|.+. . +++|+++.+...+. .+ . .....+.+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~~~-----------v~i~~D~~~~~~~~~~--~~-g-~~~~~~~~ 92 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGELPA-----------IQVPMDGFHLDNAVLD--AH-G-LRPRKGAP 92 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCCce-----------EEEecccccCCHHHHH--hc-c-cccccCCC
Confidence 5568999999999999999999999998 7777532 2 66776654431110 10 0 00123345
Q ss_pred CCchHHHHHHHHHHhccCC-CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHH
Q 023126 158 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 236 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~ 236 (287)
...+.+.+.+.+..+.... ....+.|+....+.+.-...+....++++.|+.++++++..|..+...++..+++.-+.+
T Consensus 93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~ 172 (229)
T PRK09270 93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAE 172 (229)
T ss_pred CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHH
Confidence 5667777888888887554 566777777776654432223335789999999999998888889999999999999999
Q ss_pred HHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEEeccCC
Q 023126 237 TAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 286 (287)
Q Consensus 237 ~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 286 (287)
...+|+..|..+.|...+.+.+.+.....++++|+.+.+.+||+||++..
T Consensus 173 ~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 173 VLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEecC
Confidence 99888888877788777777777776677888999999999999998753
No 382
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.77 E-value=1.7e-18 Score=146.95 Aligned_cols=204 Identities=42% Similarity=0.680 Sum_probs=175.2
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
-..-+.+|+.|+.|+||||++..+.... |..-.- ++. ..-....++|+|+|++....+..+++.......+|.|
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aW----p~~~~~-f~~-e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGap 189 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAW----PVNVNK-FAQ-ESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP 189 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhc----chhhhh-hhh-hhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence 4456799999999999999999988754 432100 111 1111234589999999988889999999988899999
Q ss_pred CCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 158 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
+.++...+...+..+. ...+.++|.+..|-+..+.--..+....|++|+|+.++++|++-|+.+-+.++.+.++.-|.
T Consensus 190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~ 269 (323)
T KOG2702|consen 190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDY 269 (323)
T ss_pred cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccH
Confidence 9999999998888887 66788999999999999988888888899999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCC--ChHHHHHHHHHhcCcchHHHHhhcCCCccEEeccCCC
Q 023126 236 DTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287 (287)
Q Consensus 236 ~~~~~rv~gr~v~~G--~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~~ 287 (287)
+.+++|+..|.+..| ++.+...|+++.+..++.++|..+.-.+|+++...++
T Consensus 270 ~~a~~RVa~RHl~sGl~~t~~ea~er~d~ND~~N~~~I~k~~i~~D~iv~~~n~ 323 (323)
T KOG2702|consen 270 EAAEERVAKRHLQSGLVTTIAEARERFDSNDLLNGRDIDKHLIKVDNIVHIRND 323 (323)
T ss_pred HHHHHHHHHHhhcccccCCHHHHHhhcccccccchHHHHhcccchHHHHHhhcC
Confidence 999999999999999 8889999999999999999999999999999876553
No 383
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.77 E-value=9.4e-18 Score=143.23 Aligned_cols=178 Identities=23% Similarity=0.350 Sum_probs=129.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||+|+||||||||+++|.+++. . ..+.++++|+++... +..+........++.+.+.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~---~-------------~~~~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 61 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG---N-------------PKVVIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF 61 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---C-------------CCeEEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence 589999999999999999999874 1 126788999775432 232322222233455666777
Q ss_pred HHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 163 LLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 163 ~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+.+.+.|..+.... ..+...+|.|++++..+ .+.++.+++.|+++++.++ .+.+.++..||+..+.+....
T Consensus 62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~----~~~~~~d~~i~v~~~~~~~~~ 134 (198)
T cd02023 62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK----ELRDLMDLKIFVDTDADVRLI 134 (198)
T ss_pred HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch----hHHhhcCeEEEEECChhHHHH
Confidence 77778888777443 34455778888776554 4567899999999998873 556677888999999998888
Q ss_pred HHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 241 RVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 241 rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
|.+.|.. .+|...+.....|.....+++. |+.+++..||+|+++.+
T Consensus 135 R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 135 RRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhceeEEECCCC
Confidence 7776654 5676666555667666777776 89999999999998653
No 384
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=6.4e-19 Score=156.31 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHH-----HHhcc--cCCCCcccccCCCCCCceeEEEeCCCCCCC-------
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVV-----RRINK--IWPQKASSFDSQVKPPDVATVLPMDGFHLY------- 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~-----G~l~~--~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~------- 137 (287)
+++ +.++.|.+++|.|.||||||||++.+. ..+.. ..|..++...+.... ..+-++.|.+....
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~vdq~pi~~~~rs~~~t 90 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHI-DKVIVIDQSPIGRTPRSNPAT 90 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCccccccccccc-CceEEecCCcCCCCCCCcHHH
Confidence 666 899999999999999999999998653 11110 003222222211111 11223333321110
Q ss_pred -------------------------------------cccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCC
Q 023126 138 -------------------------------------LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGS 177 (287)
Q Consensus 138 -------------------------------------~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~ 177 (287)
...+|+.|++.+..... ...+..+.++.++. ..+
T Consensus 91 y~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~------~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 91 YTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP------KIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred HHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh------hHHHHHHHHHHcCCchhhhc
Confidence 01245555554433221 13455667777774 246
Q ss_pred CCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+++.+|||||+||+++|++++.+ ++++++|||+..||. .+++.+.++.+ ..|++||+++++..
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 78889999999999999999985 699999999999998 34444444433 24699999998755
No 385
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=1e-18 Score=153.73 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=47.0
Q ss_pred CCCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCCCh----hhHHHHHHhhc-Cce-EEEeCHHHHH
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFD-EKW-FIEVDLDTAM 239 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe----~~~~~l~~~~~-~~i-~vtHd~~~~~ 239 (287)
.+.++..||+||+||+++|++++ .+++++++|+++..+|. .+++.+.++.+ ..+ +++|+ .++.
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~-~~~~ 224 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFR-PELL 224 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecC-HHHH
Confidence 45678899999999999999996 35899999999999999 44555555543 334 44555 4444
No 386
>PRK05439 pantothenate kinase; Provisional
Probab=99.76 E-value=7.6e-18 Score=152.28 Aligned_cols=189 Identities=24% Similarity=0.324 Sum_probs=140.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~ 160 (287)
.-++||.|++|||||||++.|..++. ... ....+.++++|+|+.++..+.. + .....+|.|.++
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~---~~~---------~~~~v~vi~~DdFy~~~~~l~~--~--~l~~~kg~Pes~ 149 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLS---RWP---------EHPKVELVTTDGFLYPNAVLEE--R--GLMKRKGFPESY 149 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH---hhC---------CCCceEEEeccccccCHHHHhh--h--hccccCCCcccc
Confidence 35899999999999999999999885 211 0123788999999876543221 1 011246778899
Q ss_pred hHHHHHHHHHHhccCCC-CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh--hHHHHHHhhcCceEEEeCHHH
Q 023126 161 NPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~-~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~--~~~~l~~~~~~~i~vtHd~~~ 237 (287)
|.+.+.+.|..+..+.. ..+|.||.-...++.-....+.+++++|+||.+++.++. .|..+.++++..||++-+.+.
T Consensus 150 D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~ 229 (311)
T PRK05439 150 DMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDL 229 (311)
T ss_pred cHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHH
Confidence 99999999999987664 778888888777764444455678999999999887654 578889999999999999999
Q ss_pred HHHHHhhcccc----------------CCChHH----HHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 238 AMQRVLKRHIS----------------TGKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 238 ~~~rv~gr~v~----------------~G~~~e----v~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
+.+|.+.|.+. .|.+.+ .+...|.....|+.+ ||+|++.+||+|+++-
T Consensus 230 ~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~ 298 (311)
T PRK05439 230 IEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKG 298 (311)
T ss_pred HHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCC
Confidence 87755533321 233333 334556678899995 9999999999999864
No 387
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.75 E-value=6.3e-18 Score=162.90 Aligned_cols=173 Identities=13% Similarity=0.027 Sum_probs=125.1
Q ss_pred CCccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 49 QPVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
+..+.++|+++.-.+ +..+ ++. +.+++|+.+-|.|+||||||||+|+|+|+-+ --+|+|..-. ...+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll-----~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~~P~---~~~~ 458 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLL-----SELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRISMPA---DSAL 458 (604)
T ss_pred cceeEEeeeeEECCCCCeee-----ccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCceecCC---CCce
Confidence 577888888888765 4555 777 9999999999999999999999999999987 5678776542 2337
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--------CCCCCCCCCCcccCCchhhhhhhc
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--------QGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
-|+||.+|... -|.+|-+.++.. ......+.+.+.|..++. ..+.--..||+|||||+++|+.+.
T Consensus 459 lflpQ~PY~p~---GtLre~l~YP~~----~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL 531 (604)
T COG4178 459 LFLPQRPYLPQ---GTLREALCYPNA----APDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL 531 (604)
T ss_pred EEecCCCCCCC---ccHHHHHhCCCC----CCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH
Confidence 89999987433 255554443211 112455667777777662 122223389999999999999999
Q ss_pred cCccEEEEcCcccCCChhhHHHHHHhhc----C--ceEEEeCHHHHH
Q 023126 199 LQHKVVIVDGNYLFLDGGVWKDVSSMFD----E--KWFIEVDLDTAM 239 (287)
Q Consensus 199 ~~a~~li~d~~~lllDe~~~~~l~~~~~----~--~i~vtHd~~~~~ 239 (287)
++|+.+++||-+..+||+....+.++.+ . .|.|.|......
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~ 578 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN 578 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH
Confidence 9999999999999999954444444333 2 246677766543
No 388
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.75 E-value=1.4e-17 Score=143.38 Aligned_cols=183 Identities=25% Similarity=0.372 Sum_probs=129.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
++|+++||+|+||||||||++.|+++++ + ..++++++|+++.....+...+. ....++.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---K-------------LEIVIISQDNYYKDQSHLEMAER---KKTNFDHPD 64 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc---c-------------cCCeEecccccccChhhCCHHHh---cCCCCCCcc
Confidence 5799999999999999999999999986 3 12678899987544322221111 111233445
Q ss_pred CchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHH
Q 023126 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~ 238 (287)
..+.+.+.+.++.+..+.....+.|+.....+.. ......+..++|+|+.+++++ +.+.+.++..|+++.+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~----~~~~~~~d~~I~v~~~~~~~ 139 (207)
T TIGR00235 65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFD----ERLRDLMDLKIFVDTPLDIR 139 (207)
T ss_pred HhHHHHHHHHHHHHHCCCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhch----HhHHHhCCEEEEEECChhHH
Confidence 5666777788887776666666666554433321 112234578999999988876 35667788889999999999
Q ss_pred HHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 239 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 239 ~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
..|++.|.. ..|...+...+.|....++++. ++.|.+.+||+|+++.
T Consensus 140 l~R~~~R~~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~ 188 (207)
T TIGR00235 140 LIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEG 188 (207)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHhhhhhHHHhCcccccccEEEEcCC
Confidence 888886654 4676666656666667778776 8899999999999853
No 389
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.74 E-value=2.5e-18 Score=148.58 Aligned_cols=145 Identities=13% Similarity=0.079 Sum_probs=93.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc-------CCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-------SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~-------~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
.+|++++|+||||||||||+++|++.+.+ +..+.... ........+++.+|+....+ ++..+.
T Consensus 26 ~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~----~~~r~~---- 95 (213)
T cd03279 26 DNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY----RVERSR---- 95 (213)
T ss_pred CccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCccEEEEEEEEECCeEE----EEEEec----
Confidence 35889999999999999999999964421 44333221 11222344788887753211 222211
Q ss_pred HhcCCCCCchHHHHHHH--HHH--hccCCCCCCCCCCcccCCchhhhhhhcc----------CccEEEEcCcccCCChh-
Q 023126 152 ARRGAPWTFNPLLLLNC--LKN--LRNQGSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGG- 216 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~--l~~--l~~~~~~~~~~lSgG~~qrv~ia~al~~----------~a~~li~d~~~lllDe~- 216 (287)
+. +.+.+.+. +.. +....+.++..||+||+||+++|++++. +++++++|+++..+|..
T Consensus 96 ---gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~ 168 (213)
T cd03279 96 ---GL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEA 168 (213)
T ss_pred ---CC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHH
Confidence 22 11222111 111 2234467888999999999999999974 56899999999999983
Q ss_pred ---hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 217 ---VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 217 ---~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+.+.+.++.+ ..|++||+++.+..
T Consensus 169 ~~~~~~~l~~~~~~~~tii~itH~~~~~~~ 198 (213)
T cd03279 169 LEAVATALELIRTENRMVGVISHVEELKER 198 (213)
T ss_pred HHHHHHHHHHHHhCCCEEEEEECchHHHHh
Confidence 4444444433 34689999987754
No 390
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.74 E-value=5.8e-17 Score=139.56 Aligned_cols=183 Identities=26% Similarity=0.387 Sum_probs=128.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
.++.+++|.|+||||||||++.|++.+. . ..+.++++|.++.....++..+. ....++.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---~-------------~~~~~i~~D~~~~~~~~~~~~~~---~~~~~~~~~ 64 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---D-------------ESIAVIPQDSYYKDQSHLSFEER---VKTNYDHPD 64 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---C-------------CceEEEeCCccccCcccCCHHHh---cccCccCcc
Confidence 4678999999999999999999999874 1 12788999988665432222221 112344566
Q ss_pred CchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHH
Q 023126 159 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~ 238 (287)
+.+.+.+.+.|..+........+.++.....+..- .....+..++++|+.+++.++ .+.+.++..|+++-+.+..
T Consensus 65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~----~~~~~~d~~I~v~~~~~~~ 139 (209)
T PRK05480 65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDE----RLRDLMDIKIFVDTPLDIR 139 (209)
T ss_pred cccHHHHHHHHHHHHcCCccccCcccccccccCCC-eEEeCCCCEEEEEeehhcCch----hHhhhhceeEEEeCChhHH
Confidence 67788888888888765555555443322222211 112344679999999988753 5667788899999999999
Q ss_pred HHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 239 MQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 239 ~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
..|++.|.. .+|...+.+.++|.....+.+. |++|.+.+||+|+++.
T Consensus 140 ~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~AD~vI~~~ 188 (209)
T PRK05480 140 LIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcceeEEecCC
Confidence 888887765 5577666666677766677776 9999999999999853
No 391
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.74 E-value=5.6e-18 Score=160.26 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=145.7
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...|++++++++..- .+ +++ |.+++|||+||.|--|||+|-|++.|.|..+ +++|+|.++|....
T Consensus 259 ~~~~~l~v~~l~~~~----~~-----~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~ 326 (500)
T COG1129 259 IGEPVLEVRNLSGGG----KV-----RDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIR 326 (500)
T ss_pred CCCcEEEEecCCCCC----ce-----eCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCC
Confidence 456777788775443 23 556 9999999999999999999999999999888 89999999997432
Q ss_pred -------ceeEEEeCCCCC-CCcccCCccccHHHHH-HhcC----CCCCchHHHHHHHHHHhc---cCCCCCCCCCCccc
Q 023126 124 -------DVATVLPMDGFH-LYLSQLDAMEDPKEAH-ARRG----APWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGV 187 (287)
Q Consensus 124 -------~~i~~v~qd~~~-~~~~~ltv~e~i~~~~-~~~~----~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~ 187 (287)
.-++|++.|.-. -....+++.+|+.+.. ..+. .......+.+.++.+.++ ...+.++..||||.
T Consensus 327 sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGN 406 (500)
T COG1129 327 SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN 406 (500)
T ss_pred CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchh
Confidence 238999988421 1112378999998762 1111 122223334566666676 34567888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcCc---eEEEeCHHHHHH---HHh----hcccc
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDEK---WFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~~---i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||+|.||+++..+|++||+|+|+-..|- ++.+.++++.+.+ +++|-+++++.. |++ ||++.
T Consensus 407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998 7778888887763 699999999987 766 77764
No 392
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.74 E-value=1.4e-17 Score=159.72 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=126.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~ 161 (287)
-+|||.||||||||||++.|++.++ . ++.+++|+++.... . ....+..+...+
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp----~--------------vgvIsmDdy~~~~~------~---i~~nfD~P~a~D 118 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP----S--------------IAVISMDNYNDSSR------I---IDGNFDDPRLTD 118 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC----C--------------cEEEEEcceecchh------h---hCccCCChhhcc
Confidence 5899999999999999999999873 2 45677787642210 0 112234455566
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH-
Q 023126 162 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ- 240 (287)
Q Consensus 162 ~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~- 240 (287)
.+.+.+.+..+..+....+|.|+.-...|..-......+++++|+|+.+++.+ .++++++..||++.+.+..+.
T Consensus 119 ~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlkIFVDtdvDirL~R 193 (656)
T PLN02318 119 YDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLRVSVTGGVHFDLVK 193 (656)
T ss_pred hhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEEEEEcCCccHHHHH
Confidence 67777788888877777778777776666532223456789999999999864 789999999999977777666
Q ss_pred HHhhccccCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEecc
Q 023126 241 RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 241 rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 284 (287)
|+..++.++|...+-+..++....+|+++ ||+|++++||+|+.+
T Consensus 194 RI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n 238 (656)
T PLN02318 194 RVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVN 238 (656)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEec
Confidence 44455667787666555566667899998 999999999999954
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.1e-17 Score=156.33 Aligned_cols=171 Identities=11% Similarity=-0.019 Sum_probs=110.0
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
+...+..+.||++..+ .+- +++..|..+||+|+||+|||||+|+|+.-.-...|..-++. .-+++
T Consensus 81 i~~~~fdLa~G~k~LL-----~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~---------g~~t~ 146 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILL-----NKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVR---------GDDTE 146 (582)
T ss_pred eeeeeeeeeecchhhh-----cCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhhee---------ccchH
Confidence 4455788899999888 777 99999999999999999999999999971100001111110 00011
Q ss_pred CCCCCCCcccCCccccHHHHHHhcCCCCCchHHHH-HHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccCccEEEE
Q 023126 131 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL-LNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 131 qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~-~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
..... ...++...+ +.............+.+ .++|..+| +...++..+||||+|+|+++|+|+..+|++|++
T Consensus 147 ~~~~~-l~~D~~~~d---fl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 147 ALQSV-LESDTERLD---FLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLL 222 (582)
T ss_pred HHhhh-hhccHHHHH---HHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEee
Confidence 00000 000111111 11111111111122223 33677777 344578889999999999999999999999999
Q ss_pred cCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 207 DGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 207 d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+|+--||-.....|...+. +.++||||..++-.
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNT 260 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHH
Confidence 99999999866666666554 35799999988766
No 394
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=6.9e-18 Score=172.01 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=138.0
Q ss_pred cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCC
Q 023126 62 KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFH 135 (287)
Q Consensus 62 ~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~ 135 (287)
+.+..+ +++ =-++||...||+|+|||||||||++|+|..... -.+|+|.++|... ++.+||+.|++.+
T Consensus 802 ~~~qLL-----~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH 875 (1391)
T KOG0065|consen 802 GTRQLL-----NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARVSGYVEQQDIH 875 (1391)
T ss_pred cceEhh-----hcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccccceeeccccc
Confidence 445555 777 569999999999999999999999999975311 2467888988654 4669999999888
Q ss_pred CCcccCCccccHHHHHHhcCC---CCCchHHHHHHHHHHhccC--CCCCCC----CCCcccCCchhhhhhhccCc-cEEE
Q 023126 136 LYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDILVGLQH-KVVI 205 (287)
Q Consensus 136 ~~~~~ltv~e~i~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~----~lSgG~~qrv~ia~al~~~a-~~li 205 (287)
.+ ++||+|-+.+....+-. +..+..+.++++++.++.. .+.-+. -||.+||+|+.|+.-|+.+| -+|+
T Consensus 876 ~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilF 953 (1391)
T KOG0065|consen 876 SP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILF 953 (1391)
T ss_pred Cc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEE
Confidence 75 49999999997765522 2233345678888877733 444444 59999999999999999988 8899
Q ss_pred EcCcccCCCh----hhHHHHHHhhcC--ceEEE-eCHHH-HHH---HHh-----hccccCCChHH
Q 023126 206 VDGNYLFLDG----GVWKDVSSMFDE--KWFIE-VDLDT-AMQ---RVL-----KRHISTGKPPD 254 (287)
Q Consensus 206 ~d~~~lllDe----~~~~~l~~~~~~--~i~vt-Hd~~~-~~~---rv~-----gr~v~~G~~~e 254 (287)
+|||+..||. -+.+.++++.+. .|+.| |.+.. +.+ |++ |+.+..|+..+
T Consensus 954 LDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 954 LDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999998 455667777664 35544 66553 333 555 78887777665
No 395
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.71 E-value=2.8e-17 Score=141.14 Aligned_cols=143 Identities=13% Similarity=0.003 Sum_probs=96.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHH----HHhcccCCCCcccc-----cCCCCCCceeEEEeCCCC-CCC--cccCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASSF-----DSQVKPPDVATVLPMDGF-HLY--LSQLDA 143 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~----G~l~~~~p~~G~i~-----~~~~~~~~~i~~v~qd~~-~~~--~~~ltv 143 (287)
+.+.+| +++|+||||||||||+++|. |... |++|.+. +........+++.+|++. ..+ ...+++
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 567777 99999999999999999996 6555 7776432 111223345888888752 111 111355
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCc------hhhhhhhccCccEEEEcCcccCCChh-
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGG- 216 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qr------v~ia~al~~~a~~li~d~~~lllDe~- 216 (287)
++|+.+. + ...+.+.+ +..+..||+||+|| ++++++++.+++++++|+++..+|+.
T Consensus 94 ~~~~~~~------~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~ 156 (204)
T cd03240 94 LENVIFC------H----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN 156 (204)
T ss_pred hhceeee------c----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH
Confidence 5555321 1 12222222 66788999999996 67888899999999999999999973
Q ss_pred ----hHHHHHHhhc----CceEEEeCHHHHH
Q 023126 217 ----VWKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 217 ----~~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
+.+.+.++.+ ..|++||+++...
T Consensus 157 ~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~ 187 (204)
T cd03240 157 IEESLAEIIEERKSQKNFQLIVITHDEELVD 187 (204)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence 3344444443 2479999988764
No 396
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.71 E-value=2.3e-18 Score=148.82 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=95.9
Q ss_pred cccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCc
Q 023126 60 QNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 138 (287)
Q Consensus 60 ~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~ 138 (287)
.|+....+ +++ + +++||+||||||||||+++|.-.+. .+.... ....++++++.....+
T Consensus 13 ~~~~~~~l-----~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~------~~~~i~~~~~~~~~~~- 72 (212)
T cd03274 13 SYAGEQVI-----GPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM------RQKKLSDLIHNSAGHP- 72 (212)
T ss_pred cCCCCeee-----ccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh------hhhhHHHHhcCCCCCC-
Confidence 55555555 544 4 7999999999999999999985543 211100 1123566666543222
Q ss_pred ccCCccccHHHHHH--------hcCCCCCchH-----HHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc----Cc
Q 023126 139 SQLDAMEDPKEAHA--------RRGAPWTFNP-----LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QH 201 (287)
Q Consensus 139 ~~ltv~e~i~~~~~--------~~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~----~a 201 (287)
.+++.++..+... .++....... +.+.+.+ .+....+.++..||+||+||+++|++++. ++
T Consensus 73 -~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~-~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 73 -NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIA-QMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred -CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEee-ccccccccchhhcCHHHHHHHHHHHHHHhcccCCC
Confidence 2555555443221 1222211100 1111111 12344566778999999999999998863 57
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+++++|+++..+|. .+++.++++.+ .+|++||+.+..
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~ 193 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMF 193 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHH
Confidence 99999999999998 44555555533 247999996543
No 397
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.71 E-value=1.7e-17 Score=139.67 Aligned_cols=207 Identities=14% Similarity=0.163 Sum_probs=142.9
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVK------ 121 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~------ 121 (287)
|++.+.+++..+......+.+ .|.+ +++.+||+-|++|+||||||-.+|.|.|..+.-|- +..+.++++.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~-VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P 80 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKA-VDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred CcccccceEEEEecCCCceEe-eeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence 566777787777654444333 3666 99999999999999999999999999998874442 23334444432
Q ss_pred ------CCceeEEEeCCCCCCCcccCCccccHHHHH--Hhc-CC---CCCchHHHHHHHHHHhccCC-----CCCCCCCC
Q 023126 122 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH--ARR-GA---PWTFNPLLLLNCLKNLRNQG-----SVYAPSFD 184 (287)
Q Consensus 122 ------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~--~~~-~~---~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS 184 (287)
..+.+++++|++....++..++...+.... ..+ |. .......++.++|.++|... ..++.+|-
T Consensus 81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 234588999998776655433322221110 001 10 01234567788898998432 24777999
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---Cc-eEEEeCHHHHHHH---H--h--hccccC
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK-WFIEVDLDTAMQR---V--L--KRHIST 249 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~-i~vtHd~~~~~~r---v--~--gr~v~~ 249 (287)
-|+-|+|+||+|++.++|+||.|+++--++. .+++.+..+.+ .. ++++||+..+.++ + + |+-++.
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 9999999999999999999999999999998 34444444433 23 5899999998882 2 1 888888
Q ss_pred CChHHHHH
Q 023126 250 GKPPDVAK 257 (287)
Q Consensus 250 G~~~ev~~ 257 (287)
+..++++.
T Consensus 241 a~~e~l~~ 248 (330)
T COG4170 241 APSEELVT 248 (330)
T ss_pred cchhHHhc
Confidence 88777664
No 398
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.70 E-value=6.6e-17 Score=151.82 Aligned_cols=188 Identities=12% Similarity=0.013 Sum_probs=121.3
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEE
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 128 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~ 128 (287)
.-+.+.++++.|.+...+ .++ +.+.+|+.+||+|+|||||||++++|.|-.. |..-.+ .+
T Consensus 74 ~dvk~~sls~s~~g~~l~-----kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~-----------d~ 134 (614)
T KOG0927|consen 74 RDVKIESLSLSFHGVELI-----KDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHI-----------DF 134 (614)
T ss_pred ccceeeeeeeccCCceee-----eeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCccc-----------ch
Confidence 357788999999999999 888 9999999999999999999999999999887 643221 11
Q ss_pred EeCCCCCCCcccCCcccc----------HHHHHHhcCC--CC------------------CchHHHHHHHHHHhc---cC
Q 023126 129 LPMDGFHLYLSQLDAMED----------PKEAHARRGA--PW------------------TFNPLLLLNCLKNLR---NQ 175 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~----------i~~~~~~~~~--~~------------------~~~~~~~~~~l~~l~---~~ 175 (287)
.+.+....+...-++... ++.....+.. .. .....++.++|..++ ..
T Consensus 135 y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 135 YLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred hhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 111111111110011111 1111111100 00 001112223333333 23
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh---cC--ceEEEeCHHHHHH---HHh----
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF---DE--KWFIEVDLDTAMQ---RVL---- 243 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~---~~--~i~vtHd~~~~~~---rv~---- 243 (287)
.++.+..|||||++|+++|++|...|.+|++|+|+.-||-+....|.+.+ +. .++++|+.+++-. .++
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 45778899999999999999999999999999999999986555555443 34 4688999999887 555
Q ss_pred hccc-cCCChHHHH
Q 023126 244 KRHI-STGKPPDVA 256 (287)
Q Consensus 244 gr~v-~~G~~~ev~ 256 (287)
++.+ ..|.-+...
T Consensus 295 kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYV 308 (614)
T ss_pred cceeeecCCHHHHh
Confidence 3433 456655544
No 399
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=1.8e-16 Score=135.54 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=94.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-----cc----cccCCCCCCceeEEEeCCCCCCCcccCCcccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-----G~----i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+.+.+| +.+|+||||||||||+..|...+. .+. |. +...+. ....+.+.+++.... +|
T Consensus 17 l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~-~~~~i~~~~~~~~~~--------~~ 83 (198)
T cd03276 17 IEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGE-SSAKITVTLKNQGLD--------AN 83 (198)
T ss_pred EecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCC-CeEEEEEEEEcCCcc--------CC
Confidence 556665 778999999999999999987654 332 21 111111 123355555542211 11
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh----ccCccEEEEcCcccCCCh----hhH
Q 023126 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVW 218 (287)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al----~~~a~~li~d~~~lllDe----~~~ 218 (287)
.......+.+.++++. ....+.++.+||+||+||+++++++ +.+++++++||++..+|. .++
T Consensus 84 ---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~ 153 (198)
T cd03276 84 ---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIST 153 (198)
T ss_pred ---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHH
Confidence 0111123456666666 5556778889999999999999998 589999999999999998 355
Q ss_pred HHHHHhhc------CceEEEeCHHHHHH
Q 023126 219 KDVSSMFD------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~------~~i~vtHd~~~~~~ 240 (287)
+.+.+... ..++++|+++.+..
T Consensus 154 ~~l~~~~~~~~~~~~iii~th~~~~i~~ 181 (198)
T cd03276 154 DLLVKEAKKQPGRQFIFITPQDISGLAS 181 (198)
T ss_pred HHHHHHHhcCCCcEEEEEECCccccccc
Confidence 55655432 23577899999876
No 400
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.66 E-value=4.4e-16 Score=158.85 Aligned_cols=93 Identities=20% Similarity=0.193 Sum_probs=72.6
Q ss_pred HHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---CceEE
Q 023126 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 231 (287)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~i~v 231 (287)
..+.|+.++.. .++++.+|||||+||+.+|++++.++ .++++||++..||. .+++.+.++.+ .+|++
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35566666643 46788899999999999999999988 99999999999999 44455555443 34699
Q ss_pred EeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 232 EVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 232 tHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
||+++++.. +++ |++++.|+++++..
T Consensus 890 tH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 890 EHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 999999865 443 57888999888764
No 401
>PLN02348 phosphoribulokinase
Probab=99.65 E-value=2.3e-15 Score=139.01 Aligned_cols=190 Identities=23% Similarity=0.326 Sum_probs=130.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccC--CCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~--p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
-+|||.|++|||||||++.|...+.... |..|.- -.+......+..+++|+|+.++. ..+.. .......|.+
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~-~~~~l~~~~~~VI~lDDYh~~dr--~~r~~---~g~t~ldP~a 123 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNP-DSNTLISDTTTVICLDDYHSLDR--TGRKE---KGVTALDPRA 123 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccc-cccccccCceEEEEcccccCCCh--hhHhh---cCCccCCccc
Confidence 4899999999999999999999985110 011100 00011123467899999876532 11000 0001123456
Q ss_pred chHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHH
Q 023126 160 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAM 239 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~ 239 (287)
.+.+.+.+.+..+..+.....|.|+.-...+..- ..+.+++++|+|+.+.++|+ .++++++..||++.+.+..+
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e----~lr~l~D~~IyVd~~~dvrl 197 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDE----RVRDLLDFSIYLDISDDVKF 197 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCc----cccccCcEEEEEECCHHHHH
Confidence 6777888888888877666666665554433321 23556899999999999984 67788899999999999998
Q ss_pred HHHhhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEecc
Q 023126 240 QRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 240 ~rv~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 284 (287)
.|.+.|.++ +|...+.+.+.+... .|.+. ||.|++.+||+||+-
T Consensus 198 ~RRI~RD~~eRG~S~EeV~~~i~ar-~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 198 AWKIQRDMAERGHSLESIKASIEAR-KPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHhc-CcchhhhcccccccCCEEEEe
Confidence 888878774 787777666667654 55655 999999999999853
No 402
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.65 E-value=5.4e-16 Score=146.73 Aligned_cols=183 Identities=12% Similarity=0.001 Sum_probs=126.6
Q ss_pred CCCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~ 123 (287)
+.+-+++++++++.--. ...+ ++. +.|..|+-+-|.||||||||+|+++|+|+-+ -.+|.+..-.....
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~li-----e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~ 500 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLI-----ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGP 500 (659)
T ss_pred cccceEEeeeeeecCCCCCceee-----eeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCC
Confidence 55568888888776544 3344 666 9999999999999999999999999999986 68888754333222
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhc-CCCCCchHHHHHHHHHHhc--------cCCC----CC-CCCCCcccCC
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLR--------NQGS----VY-APSFDHGVGD 189 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~l~--------~~~~----~~-~~~lSgG~~q 189 (287)
..+-|+||-||.... |.++.+.++.... ...+..+.+++.+.|+.++ .+.+ .. ...||+||+|
T Consensus 501 ~~lfflPQrPYmt~G---TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQ 577 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLG---TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQ 577 (659)
T ss_pred CceEEecCCCCcccc---chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHH
Confidence 448899999885442 6677776653221 1122233445555555544 1222 22 2389999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
|+++|+.+.++|+.-++||.+..+||++-..+-+..+ +.|-|+|-......
T Consensus 578 RLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 578 RLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 9999999888999999999988888855555444443 23567787776554
No 403
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.65 E-value=5.5e-16 Score=144.67 Aligned_cols=201 Identities=16% Similarity=0.144 Sum_probs=151.6
Q ss_pred cCCCCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-
Q 023126 46 ANAQPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP- 122 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~- 122 (287)
.++.++++++++++.-... ..+ .++ |.|+.|||+||.|-.|-|-+.|+.+|+|+.+ |.+|+|.++|.+.
T Consensus 252 ~pg~~vL~V~~L~v~~~~~~~~v-----~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~ 323 (501)
T COG3845 252 TPGEVVLEVEDLSVKDRRGVTAV-----KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVL 323 (501)
T ss_pred CCCCeEEEEeeeEeecCCCCcee-----eeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEecc
Confidence 3678899999999887643 445 666 9999999999999999999999999999998 8889999998764
Q ss_pred C---------ceeEEEeCCCCC-CCcccCCccccHHHHHHhcC------C-CCCchHHHHHHHHHHhc---cCCCCCCCC
Q 023126 123 P---------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARRG------A-PWTFNPLLLLNCLKNLR---NQGSVYAPS 182 (287)
Q Consensus 123 ~---------~~i~~v~qd~~~-~~~~~ltv~e~i~~~~~~~~------~-~~~~~~~~~~~~l~~l~---~~~~~~~~~ 182 (287)
. .-++|+|.|... -.-..+++.+|+.+...... . .+......+.++++.++ .....++..
T Consensus 324 ~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~ 403 (501)
T COG3845 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARS 403 (501)
T ss_pred ccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhh
Confidence 1 238999998632 22334899999887543321 1 11122334456666666 344566779
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH---HHh----hcccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||||.+||+-+|+-+..+|++|+...|+-.+|- .+.+.+.+..+. ++++|-|+++++. |+. ||++.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 999999999999999999999999999999998 344555555554 3699999999988 444 77776
Q ss_pred CCChHH
Q 023126 249 TGKPPD 254 (287)
Q Consensus 249 ~G~~~e 254 (287)
..++++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 555544
No 404
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.64 E-value=5.6e-15 Score=130.04 Aligned_cols=181 Identities=16% Similarity=0.116 Sum_probs=129.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH---HHhcCC--C
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA---HARRGA--P 157 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~---~~~~~~--~ 157 (287)
++||.|.|||||||+++.|...+. . .| ..+.++.+|+|+.+. .....+..... ..++.+ |
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~---~-~g----------~~v~vI~~D~yyr~~-r~~~~~~~~~a~~~~~nfdHf~P 65 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA---R-EG----------IHPAVVEGDSFHRYE-RMEMKMAIAEALDAGRNFSHFGP 65 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---h-cC----------CceEEEeccccccCC-chhHHHHHHHHhhcCCCCCCCCc
Confidence 589999999999999999998885 1 11 236789999887643 22222222211 124555 7
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCc------------ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSg------------G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~ 225 (287)
.+.+.+.+.+.|..++.+.....+.|.. |....-. .+..++.+++.||-+.++. --...+++++
T Consensus 66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~~-~~~~~lr~~~ 141 (277)
T cd02029 66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGVV-TEGYNVAQHA 141 (277)
T ss_pred ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCcccc-cccHHHHHhC
Confidence 8889999999999998777666666633 3322111 1235689999999984332 0125789999
Q ss_pred cCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEec
Q 023126 226 DEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~ 283 (287)
+.+|||.-+.++...|.+.|++ ++|...|-+...+..+. |.+. ||.|++++||++++
T Consensus 142 DlkIfVd~~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 142 DLLVGVVPIINLEWIQKIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred CeEEEecCcHHHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 9999999999998887777776 67987776555555555 8887 99999999999975
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.9e-16 Score=146.76 Aligned_cols=179 Identities=12% Similarity=0.032 Sum_probs=131.4
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..-|.+++..+.+.|....- .++..+ +.++--..++++|+||+||||++|++.|.+. |..|.+...+ +.+
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y---~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~r 428 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEY---QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLR 428 (582)
T ss_pred CCCCeeEEEeeeccCCCcch---hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cce
Confidence 34578888888888876551 122444 7777888999999999999999999999999 9999876654 345
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
++|..|....+.. +.+-. +.+....+ |.. ..+.+++.|..+|. .....+..||||||-||++|.....+|.
T Consensus 429 i~~f~Qhhvd~l~--~~v~~-vd~~~~~~--pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 429 IKYFAQHHVDFLD--KNVNA-VDFMEKSF--PGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred ecchhHhhhhHHH--HHhHH-HHHHHHhC--CCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 8999887543322 22211 22222222 222 45667888888883 3445678999999999999999999999
Q ss_pred EEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH
Q 023126 203 VVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 203 ~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
+|++|+|+--||-+ +.+.|.++...+|+||||.+++..
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISS 544 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhh
Confidence 99999999999974 334444455567899999999876
No 406
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.63 E-value=3.4e-16 Score=138.26 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=91.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC--------C-----CCceeEEEeC--CCCCCCcccCCccccH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--------K-----PPDVATVLPM--DGFHLYLSQLDAMEDP 147 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~--------~-----~~~~i~~v~q--d~~~~~~~~ltv~e~i 147 (287)
+++|+||||||||||+.+|.+++. ++.|++...+. . ....+.+.++ ++..... ..++.+..
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~-~~~~~~~~ 99 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTF-RRIITGGS 99 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEE-EEEEECCc
Confidence 899999999999999999999997 77776543221 1 0112333332 2111000 01111110
Q ss_pred HHHHHhcCC-CCCchHHHHHHHHHHhccCC------------------------CCCCCCCCcccCCchhhhhhhcc---
Q 023126 148 KEAHARRGA-PWTFNPLLLLNCLKNLRNQG------------------------SVYAPSFDHGVGDPVEDDILVGL--- 199 (287)
Q Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~------------------------~~~~~~lSgG~~qrv~ia~al~~--- 199 (287)
..+.. ........+.+.++.++... +.++.+||+||+||++++++++.
T Consensus 100 ----~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~ 175 (247)
T cd03275 100 ----SSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSY 175 (247)
T ss_pred ----eEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhcc
Confidence 00100 11123344456666655321 12347999999999999999875
Q ss_pred -CccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHH
Q 023126 200 -QHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 200 -~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
+++++++|+++..+|.. +.+.+.++.+ ..|++||+.+...
T Consensus 176 ~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~ 223 (247)
T cd03275 176 QPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFS 223 (247)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHh
Confidence 48999999999999983 4455555543 2479999977654
No 407
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.62 E-value=7.4e-16 Score=163.80 Aligned_cols=116 Identities=10% Similarity=-0.039 Sum_probs=80.5
Q ss_pred CCccccHHHHHH---hcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhc---cCccEEEEcCccc
Q 023126 141 LDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYL 211 (287)
Q Consensus 141 ltv~e~i~~~~~---~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~---~~a~~li~d~~~l 211 (287)
+|+.|++.+... .+........+++ +.++.++.. .++++.+|||||+||+++|++++ .+++++++|||+.
T Consensus 763 ~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTs 841 (1809)
T PRK00635 763 KNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTT 841 (1809)
T ss_pred CCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCC
Confidence 566666665432 1121222233344 567777732 46788899999999999999997 5899999999999
Q ss_pred CCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 212 FLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 212 llDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
.||. .+++.+.++.+ .+|++||+++.+.. |++ |++++.|+++++..
T Consensus 842 GLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 842 GLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9998 34444444433 24699999999833 332 46788899988764
No 408
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.62 E-value=1e-14 Score=130.58 Aligned_cols=173 Identities=24% Similarity=0.349 Sum_probs=114.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||+|+||||||||++.|+++++ +..| ..+.+|+++.... +.........-.+...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~-------------~vi~~Dd~~~~~~-----~~r~~~g~~~~~p~~~~~ 59 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLV-------------TVICLDDYHSLDR-----KGRKETGITALDPRANNF 59 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC---CCce-------------EEEECcccccCCH-----HHHHHhhcccccccchhH
Confidence 589999999999999999999997 5543 3455665533210 111111111111333345
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHH
Q 023126 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRV 242 (287)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv 242 (287)
+.+.+.++.+........|.|+.-...... ...+.+.+++++|+.+++.+ ..++++++..||++.+.+....|.
T Consensus 60 d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~----~~l~~~~D~~I~vd~~~e~r~~r~ 133 (273)
T cd02026 60 DLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYD----ERVRELLDFSVYLDISDEVKFAWK 133 (273)
T ss_pred HHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCc----hhhhhhccEEEEEECChhHHHHHH
Confidence 556666666666555555555543332211 01234468999999998887 467788899999999999988887
Q ss_pred hhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEec
Q 023126 243 LKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 243 ~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~ 283 (287)
+.|.++ +|...+.+.+.+... .+.+. ||.|++.+||+|++
T Consensus 134 i~Rd~~rrG~s~e~v~~~i~~r-~~~~~~~I~P~~~~ADvVI~ 175 (273)
T cd02026 134 IQRDMAERGHSLEDVLASIEAR-KPDFEAYIDPQKQYADVVIQ 175 (273)
T ss_pred HHHHHHHhCCCHHHHHHHHHhh-chhHHHHhccccccCcEEEE
Confidence 877775 576666666666544 55555 99999999999985
No 409
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.60 E-value=1.5e-15 Score=140.43 Aligned_cols=168 Identities=16% Similarity=0.084 Sum_probs=107.6
Q ss_pred ccccccc-cchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc-----------CCCCC--
Q 023126 57 SLVQNKT-SLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-----------SQVKP-- 122 (287)
Q Consensus 57 ~~~~~~~-~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~-----------~~~~~-- 122 (287)
.+.+||. .+.+ -.+...++|.++||+|+||-||||.+|+|+|.+. |.=|+..- .|...
T Consensus 80 ~vHRYg~NgFkL-----~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~pp~wdeVi~~FrGtELq~ 151 (591)
T COG1245 80 VVHRYGVNGFKL-----YRLPTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYEDPPSWDEVIKRFRGTELQN 151 (591)
T ss_pred ceeeccCCceEE-----ecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCCCCCHHHHHHHhhhhHHHH
Confidence 4556663 3444 4446689999999999999999999999999999 98776321 11100
Q ss_pred --------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 123 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
..++..=+|--...+. -+...+...+.. ......+.++.+.++ ...++.+.+||||+.||++
T Consensus 152 YF~~l~~g~~r~v~K~QYVd~iPk---~~KG~v~elLk~-----~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~a 223 (591)
T COG1245 152 YFKKLYEGELRAVHKPQYVDLIPK---VVKGKVGELLKK-----VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVA 223 (591)
T ss_pred HHHHHHcCCcceecchHHHHHHHH---HhcchHHHHHHh-----hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHH
Confidence 0001100110000000 000111111100 001123445555555 5568899999999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
||.++..+|++.++|++...||- ...+.++++.. .+++|.||+..+-.
T Consensus 224 Iaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ 278 (591)
T COG1245 224 IAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDY 278 (591)
T ss_pred HHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHH
Confidence 99999999999999999999997 45566777765 35789999988755
No 410
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.59 E-value=8.3e-15 Score=123.33 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=119.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
+++|.|++|||||||++.|+..+. . .| ..+.++++|+|+.+. ... .. ....+..+...+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~---~-~~----------~~~~~i~~Ddf~~~~--~~~--~~--~~g~~d~~~~~d~ 60 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR---V-NG----------IGPVVISLDDYYVPR--KTP--RD--EDGNYDFESILDL 60 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH---H-cC----------CCEEEEehhhcccCc--ccc--cc--cCCCCCCCccccH
Confidence 579999999999999999999885 1 11 226789999887653 110 00 0112233333577
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHH-HHHH
Q 023126 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT-AMQR 241 (287)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~-~~~r 241 (287)
+.+.+.+..+........+.|+.-..++..-......+..++|+|+.+++.+ .++++++..||++.+.+. .+.|
T Consensus 61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~-----~l~~~~d~~I~vd~~~~~~rl~r 135 (179)
T cd02028 61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE-----RLRSLLDIRVAVSGGVHLNRLLR 135 (179)
T ss_pred HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH-----hHHhhcCEEEEEeCCccHHHHHH
Confidence 7888888877766555666555544444432122345688999999999764 678888999999999998 6666
Q ss_pred Hhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEecc
Q 023126 242 VLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 284 (287)
Q Consensus 242 v~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 284 (287)
.+-|.+ ++|...+-..+++. ...+.+. ++.|.+..||+|+++
T Consensus 136 ri~RD~~~rg~~~~~~i~~~~-~~~~~~~~~~~~~~~~ad~~~~~ 179 (179)
T cd02028 136 RVVRDIQFRGYSAELTILMWP-SVPSGEEFIIPPLQEAAIVMFNS 179 (179)
T ss_pred HHHHhHHhhCCCHHHHhhhcc-cccCchhhcCCCchhccceeccC
Confidence 666665 67877765555443 4444454 557789999999874
No 411
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.59 E-value=9.1e-15 Score=128.00 Aligned_cols=177 Identities=29% Similarity=0.474 Sum_probs=145.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
+..-++||.|+-|+||||+++.+.-++.+ ||. ...+..+++|+|++++..+.. ++ .+...|.|.
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~-----------~~~v~lvpmDGFhy~n~~L~~-~g---lm~rKGfPe 143 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSR-WPE-----------SPKVDLVTMDGFHYPNAVLDE-RG---LMARKGFPE 143 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhh-CCC-----------CCceEEEeccccccCHhHhhh-cc---ccccCCCCc
Confidence 34469999999999999999999999872 222 123789999999888754431 11 234568899
Q ss_pred CchHHHHHHHHHHhc-cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHH
Q 023126 159 TFNPLLLLNCLKNLR-NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 159 ~~~~~~~~~~l~~l~-~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~ 237 (287)
.+|...+.+.+..+. ...+..+|.||.-....+.-+..+..++++||+||..+++|++-|-.+.++++-.|||.-+.+.
T Consensus 144 SyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~ 223 (283)
T COG1072 144 SYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEEL 223 (283)
T ss_pred cccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHH
Confidence 999999999999998 4556889999998888888888888889999999999999999888999999999999999999
Q ss_pred HHHHHhhccccCCChHHHHHHHHHhcCcchHHHH
Q 023126 238 AMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELI 271 (287)
Q Consensus 238 ~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i 271 (287)
+.+|++.|....|.........+..++.++.+..
T Consensus 224 le~wyi~Rfl~~g~~a~~~~~~~~~~~~~~~~~~ 257 (283)
T COG1072 224 LEERYIERFLKFGLTAFEDPASYFHNYAPLSERE 257 (283)
T ss_pred HHHHHHHHHHhcccchhhChhhHhhccCcchHHH
Confidence 9999999888888777776666666667776643
No 412
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.58 E-value=4.3e-15 Score=136.00 Aligned_cols=159 Identities=14% Similarity=0.101 Sum_probs=110.4
Q ss_pred hhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccC-----CCCcccccCCCCCCceeEEEeCCCCCCCcccCCc
Q 023126 70 SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 70 ~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~-----p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv 143 (287)
-+++++ +.+++|++++|+|+|||||||++++|+|...... |++|.|.+-.... .+++|-.... .++
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~---~a~iPge~Ep----~f~- 468 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV---SALIPGEYEP----EFG- 468 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch---hhccCccccc----ccC-
Confidence 345888 9999999999999999999999999999753221 7888776533221 3344433221 122
Q ss_pred cccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----
Q 023126 144 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG---- 215 (287)
Q Consensus 144 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe---- 215 (287)
.+++.. ..+ ....|...+.++|.+.+.. -..+..+||-||+.|+.||.+++..|.+++.|+-...|||
T Consensus 469 ~~tile--hl~--s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 469 EVTILE--HLR--SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred chhHHH--HHh--hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 122221 111 1223556677888888732 2346679999999999999999999999999999999999
Q ss_pred hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 216 GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 ~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
.+.+.+.++.. ..+.+||..++..+
T Consensus 545 rVArkiselaRe~giTlivvThrpEv~~A 573 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRPEVGNA 573 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence 34444444442 23689999998755
No 413
>PRK07429 phosphoribulokinase; Provisional
Probab=99.56 E-value=7.7e-14 Score=127.68 Aligned_cols=170 Identities=25% Similarity=0.394 Sum_probs=117.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC----CC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----AP 157 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~----~~ 157 (287)
-++||.|+||||||||++.|++++. ++. +.++.+|+++.... . + ....+ .+
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~---~~~-------------~~vi~~Dd~~~~~~--~--~-----r~~~g~~~l~p 63 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLG---EEL-------------VTVICTDDYHSYDR--K--Q-----RKELGITALDP 63 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhc---cCc-------------eEEEEecccccCCH--H--H-----HHhcCCcccCc
Confidence 4899999999999999999999997 543 34566776642210 0 0 11111 23
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCC--CCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPS--FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~--lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
...+.+.+.+.++.+........+. .+.|+... - ....+.+++|+|+.+.+++ ..++++++..||++-+.
T Consensus 64 ~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~--~--~~i~p~~iVIvEG~~~l~~----~~lr~~~D~~I~Vda~~ 135 (327)
T PRK07429 64 RANNLDIMYEHLKALKTGQPILKPIYNHETGTFDP--P--EYIEPNKIVVVEGLHPLYD----ERVRELYDFKVYLDPPE 135 (327)
T ss_pred cchHHHHHHHHHHHHHCCCceecceeecCCCCcCC--c--EecCCCcEEEEechhhcCc----HhHHhhCCEEEEEECCH
Confidence 4455667777777777655544443 34443221 1 1233468999999998887 36778889999999999
Q ss_pred HHHHHHHhhcccc-CCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 236 DTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 236 ~~~~~rv~gr~v~-~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
++...|.+.|..+ +|...+.+.+++... .+.+. ||.|++.+||+|++..
T Consensus 136 evr~~Rri~Rd~~rrG~s~eei~~~i~~r-~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 136 EVKIAWKIKRDMAKRGHTYEQVLAEIEAR-EPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHh-CccHhhhhcccccCCCEEEEcC
Confidence 9998888877775 577667666666654 45554 9999999999998654
No 414
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.56 E-value=1.1e-14 Score=122.24 Aligned_cols=186 Identities=14% Similarity=-0.039 Sum_probs=118.5
Q ss_pred cCCCCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC
Q 023126 46 ANAQPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 123 (287)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~ 123 (287)
+..+.++++.++++.|... ..+ -++ +.+..|....++|.||||||||+|+|+|--- ...|-|.+.|...-
T Consensus 8 ~~~~~aievsgl~f~y~~~dP~~-----~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaF 79 (291)
T KOG2355|consen 8 AVSDFAIEVSGLQFKYKVSDPIF-----FDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAF 79 (291)
T ss_pred hcccceEEEeccEEecccCCceE-----EEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcc
Confidence 4567789999999999743 333 455 8899999999999999999999999999754 44566777665432
Q ss_pred ce--------eEEEeCCCC--CCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhh
Q 023126 124 DV--------ATVLPMDGF--HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 124 ~~--------i~~v~qd~~--~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~i 193 (287)
+. ..|+...=. .....+......+.-....++... .+.++-+++++.+.....-+...+|-|||+||.|
T Consensus 80 hDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQi 158 (291)
T KOG2355|consen 80 HDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQI 158 (291)
T ss_pred ccccccccCceeEecccccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHH
Confidence 21 222211100 000000011111111112223221 1234444444444444455667999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++-|..+-++|++|+-++=||- .+++.+++..+ .++|.||-.+-...
T Consensus 159 cMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~ 213 (291)
T KOG2355|consen 159 CMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLET 213 (291)
T ss_pred HHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhh
Confidence 9999999999999999999997 33344444333 24699999887776
No 415
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=1.6e-14 Score=147.32 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhcc---CccEEEEcCcccCCCh----hhHHHHHHhhc---CceEE
Q 023126 165 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFI 231 (287)
Q Consensus 165 ~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~---~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~v 231 (287)
..+.++.++.. .++++.+|||||+||+.+|++++. ++.++++||++..||. .+++.+.++.+ .+|++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34556666632 467888999999999999999986 4899999999999999 34455555543 24699
Q ss_pred EeCHHHHHH--HHh----------hccccCCChHHH
Q 023126 232 EVDLDTAMQ--RVL----------KRHISTGKPPDV 255 (287)
Q Consensus 232 tHd~~~~~~--rv~----------gr~v~~G~~~ev 255 (287)
+|+++++.. +++ |++++.|+++++
T Consensus 888 ~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 888 EHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred eCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999998865 433 467788887764
No 416
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.54 E-value=5e-15 Score=138.86 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=97.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
... +.|++|-.+-|.||||||||+|+++|.|+.+ -..|.... +....+.|+||-||.-. -|.++.+.++.
T Consensus 499 ~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~---P~~~~mFYIPQRPYms~---gtlRDQIIYPd 569 (728)
T KOG0064|consen 499 PKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSI---PRPNNIFYIPQRPYMSG---GTLRDQIIYPD 569 (728)
T ss_pred cceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeec---CCCcceEeccCCCccCc---CcccceeecCC
Confidence 566 8899999999999999999999999999986 44554433 23445999999987432 24555554421
Q ss_pred -----HhcCCCCCchHHHHHHHHHHhc-------c---CCCCCCC-CCCcccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 152 -----ARRGAPWTFNPLLLLNCLKNLR-------N---QGSVYAP-SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 152 -----~~~~~~~~~~~~~~~~~l~~l~-------~---~~~~~~~-~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
...|.. .+.+..+|..+. . ..-..+. .||||+|||+++ ||+..+.|.+.+|||
T Consensus 570 S~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~m-------ARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 570 SSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGM-------ARMFYHRPKYALLDE 638 (728)
T ss_pred cHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHH-------HHHHhcCcchhhhhh
Confidence 122222 122233333322 1 1112333 799999999999 888888889999998
Q ss_pred -------hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 216 -------GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -------~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++-..+-+..+ ..+-|||.+.....
T Consensus 639 cTsAvsidvE~~i~~~ak~~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLWKY 674 (728)
T ss_pred hhcccccchHHHHHHHHHhcCceEEEeecCccHHHH
Confidence 33333333332 23578999988776
No 417
>PRK15453 phosphoribulokinase; Provisional
Probab=99.53 E-value=2.2e-13 Score=120.91 Aligned_cols=186 Identities=15% Similarity=0.069 Sum_probs=124.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCc-ccCCccccHHHH---HHhcC
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKEA---HARRG 155 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~-~~ltv~e~i~~~---~~~~~ 155 (287)
+.-++||.|.+||||||+++.|+..+. . .| ..+.++.+|.|+.++ .+++. ..... ..++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~---~-~~----------~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd 67 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR---R-EN----------INAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS 67 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh---h-cC----------CCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence 456899999999999999999998775 1 11 125788999887532 22221 11111 11344
Q ss_pred C--CCCchHHHHHHHHHHhccCCCCCCCCCC--ccc---CCchh--h--hhhhccCccEEEEcCcccCCChhhHHHHHHh
Q 023126 156 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD--HGV---GDPVE--D--DILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 224 (287)
Q Consensus 156 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS--gG~---~qrv~--i--a~al~~~a~~li~d~~~lllDe~~~~~l~~~ 224 (287)
. |.+.+.+.+.+.|..++.......+.|. ..+ -.+.. + -..+..++++++.||.+.+.. .-...++++
T Consensus 68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~-~~~~~lr~~ 146 (290)
T PRK15453 68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVV-TDQVDVAQH 146 (290)
T ss_pred CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccc-cccHHHHHh
Confidence 5 7788899999999888754443333332 111 00000 0 001224589999999987643 112578899
Q ss_pred hcCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEec
Q 023126 225 FDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIK 283 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~ 283 (287)
.+..|+|.-+.++...|.+.|++ ++|.+.|-+...+.... |.+. ||.|++++||+.+.
T Consensus 147 ~DlkIfVdp~~dlr~irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 147 VDLLIGVVPIVNLEWIQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred CCeeEeeCCcHhHHHHHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 99999999999988887887876 67988876655555554 8887 99999999999864
No 418
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=3.2e-13 Score=138.34 Aligned_cols=185 Identities=15% Similarity=0.141 Sum_probs=135.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
+++ ..+++|+.+-++||.|||||||++.|+|.+....-..|+|.++|.+. +..++|.+|++.+.+. |||+|.
T Consensus 132 ~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~--lTVreT 209 (1391)
T KOG0065|consen 132 KDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE--LTVRET 209 (1391)
T ss_pred cCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccce--eEEeeh
Confidence 555 77999999999999999999999999998875434466888888542 4568999999887765 999999
Q ss_pred HHHHHHhcCCCCCc----hHHH----HHHHHHHhcc-------CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc
Q 023126 147 PKEAHARRGAPWTF----NPLL----LLNCLKNLRN-------QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 147 i~~~~~~~~~~~~~----~~~~----~~~~l~~l~~-------~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l 211 (287)
+.+..+..+..... ..++ .+.+++.+|. ..+...+-.|||||+||.++-+++.+++++..|+..-
T Consensus 210 ldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~ 289 (1391)
T KOG0065|consen 210 LDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITR 289 (1391)
T ss_pred hhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccc
Confidence 99987765442111 1221 2355666662 2345677899999999999999999999999999999
Q ss_pred CCCh----hhHHHHHHhhc---CceEEE--eCHHHHHH---HHh----hccccCCChHHHHHHH
Q 023126 212 FLDG----GVWKDVSSMFD---EKWFIE--VDLDTAMQ---RVL----KRHISTGKPPDVAKWR 259 (287)
Q Consensus 212 llDe----~~~~~l~~~~~---~~i~vt--Hd~~~~~~---rv~----gr~v~~G~~~ev~~~~ 259 (287)
.||- ++.+.++.+.+ .+.+++ ...++... .++ |+++..|+.+++..-+
T Consensus 290 GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yF 353 (1391)
T KOG0065|consen 290 GLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYF 353 (1391)
T ss_pred cccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHH
Confidence 9998 45555555543 344333 33333333 444 8999999888876644
No 419
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.44 E-value=1.1e-12 Score=110.98 Aligned_cols=162 Identities=22% Similarity=0.234 Sum_probs=110.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||.|++|||||||++.|+..+. . +.++++|+++.+...+....+ ...+++.|.+.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~---~---------------~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~ 59 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP---N---------------CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM 59 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---C---------------CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence 589999999999999999999773 0 567899998877644332211 2235667888899
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccCCchh-------------hhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCce
Q 023126 163 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (287)
Q Consensus 163 ~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~-------------ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i 229 (287)
+.+.+.|..+........+.+|.+...... -+.....+.+++|+|+.+++.++ .+.++++..|
T Consensus 60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I 135 (187)
T cd02024 60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY 135 (187)
T ss_pred HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence 999999988876543334444443322111 11123456789999999998874 5778999999
Q ss_pred EEEeCHHHHHHHHhhccccC--CChHHHHHHHHHhcCcchHH
Q 023126 230 FIEVDLDTAMQRVLKRHIST--GKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 230 ~vtHd~~~~~~rv~gr~v~~--G~~~ev~~~~~~~~~~~~~~ 269 (287)
|+.-+.+++.+|.+.|.... |..-.--..||....+|++.
T Consensus 136 fvd~~~d~~~~Rr~~R~~~~~~~~~w~Dp~~yf~~~v~p~y~ 177 (187)
T cd02024 136 FLRVPYETCKRRREARTGYVTLEGFWPDPPGYFDGHVWPMYL 177 (187)
T ss_pred EecCCHHHHHHHHHHcCCccccCcccCCCCcccccccchhHH
Confidence 99999999999887554221 21111122367777778775
No 420
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.42 E-value=4.1e-13 Score=114.91 Aligned_cols=126 Identities=10% Similarity=0.045 Sum_probs=79.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+..|++++|.||||||||||+|+|+|...- ...|. .... ..+++|. ...+ ..+++.+++......+
T Consensus 20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~~l--~~~G~------~v~a-~~~~~q~-~~l~-~~~~~~d~l~~~~s~~- 87 (199)
T cd03283 20 IDMEKKNGILITGSNMSGKSTFLRTIGVNVIL--AQAGA------PVCA-SSFELPP-VKIF-TSIRVSDDLRDGISYF- 87 (199)
T ss_pred EEEcCCcEEEEECCCCCChHHHHHHHHHHHHH--HHcCC------EEec-CccCccc-ceEE-EeccchhccccccChH-
Confidence 56777899999999999999999999987630 01221 1100 1234453 2222 2478888887643221
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhH-----HHHHHhhc---C
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW-----KDVSSMFD---E 227 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~-----~~l~~~~~---~ 227 (287)
.....++.++++.++. ..++++++||++..+|.... ..+..+.+ .
T Consensus 88 ---~~e~~~~~~iL~~~~~------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~t 140 (199)
T cd03283 88 ---YAELRRLKEIVEKAKK------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTI 140 (199)
T ss_pred ---HHHHHHHHHHHHhccC------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 1223456666665541 34899999999999997322 22333332 2
Q ss_pred ceEEEeCHHHHHH
Q 023126 228 KWFIEVDLDTAMQ 240 (287)
Q Consensus 228 ~i~vtHd~~~~~~ 240 (287)
.+++||+++.+..
T Consensus 141 iiivTH~~~~~~~ 153 (199)
T cd03283 141 GIISTHDLELADL 153 (199)
T ss_pred EEEEcCcHHHHHh
Confidence 3699999998755
No 421
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.37 E-value=2.4e-12 Score=126.40 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=71.0
Q ss_pred HHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEE
Q 023126 166 LNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIE 232 (287)
Q Consensus 166 ~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vt 232 (287)
.+.|..+| ....++..+|||||-||+-+|.-|...+ -+.|+|||+..|-- .+++.|..+.+ .+|+|.
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE 882 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34444455 2456788899999999999999987666 78899999988854 34444445544 357999
Q ss_pred eCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 233 VDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 233 Hd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|+++++.. +++ |++++.|+|+++++
T Consensus 883 HNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred cccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999887 676 58999999999987
No 422
>PRK06696 uridine kinase; Validated
Probab=99.36 E-value=4.6e-12 Score=110.25 Aligned_cols=195 Identities=23% Similarity=0.331 Sum_probs=113.7
Q ss_pred hhhhcCccce--ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccc
Q 023126 68 LCSQRREIPV--VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAME 145 (287)
Q Consensus 68 v~~~~~~~~~--i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e 145 (287)
+..+.+.+.. -...-+|||.|++|||||||++.|+..++ . .| ..+..+++|+|+.+...... .
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~---~-~g----------~~v~~~~~Ddf~~~~~~r~~-~ 71 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK---K-RG----------RPVIRASIDDFHNPRVIRYR-R 71 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH---H-cC----------CeEEEeccccccCCHHHHHH-c
Confidence 3334444432 23345999999999999999999999885 1 22 12455779988654311000 0
Q ss_pred cHHHHHHhcCC-CCCchHHHHHHHHHH-hccCCC--CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHH
Q 023126 146 DPKEAHARRGA-PWTFNPLLLLNCLKN-LRNQGS--VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV 221 (287)
Q Consensus 146 ~i~~~~~~~~~-~~~~~~~~~~~~l~~-l~~~~~--~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l 221 (287)
+.. ...+. ..+.+.+.+.+.+-. +..... ...+.++.-...+..-......+..++|+|+.+++- ..+
T Consensus 72 ~~~---~~~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~-----~~~ 143 (223)
T PRK06696 72 GRE---SAEGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLR-----PEL 143 (223)
T ss_pred CCC---ChhhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhh-----hhH
Confidence 000 00000 134556665544332 322111 122223322222221111223446789999998753 356
Q ss_pred HHhhcCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhc--CCCccEEeccCC
Q 023126 222 SSMFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSID 286 (287)
Q Consensus 222 ~~~~~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~~ 286 (287)
.+.++..|+++-+.+...+|+..|.. ..|..++....++. ...+.++ |+.+. +++||+|+++.+
T Consensus 144 ~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~~~~~~~~-r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 144 RDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEEAEKMYLA-RYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchHHHHHHHH-HHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 77888899999999999998886654 45766666555554 4556666 65443 889999999875
No 423
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.36 E-value=4.5e-13 Score=114.66 Aligned_cols=123 Identities=8% Similarity=-0.064 Sum_probs=76.0
Q ss_pred CccceecCCe-EEEEECCCCCCHHHHHHHHH-HHhcccCCCCcc-cccCCCCCCceeEEEeCCCCCCCcccCCccccHHH
Q 023126 73 REIPVVEARH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 149 (287)
Q Consensus 73 ~~~~~i~~Ge-ivgIiG~nGsGKSTLlk~L~-G~l~~~~p~~G~-i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~ 149 (287)
...+.+.+|+ +++|.||||||||||+|+|. +.+. +..|- +..... ..++|+.|.
T Consensus 19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~vp~~~~---~~~~~~~~~----------------- 75 (200)
T cd03280 19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLPIPAAEG---SSLPVFENI----------------- 75 (200)
T ss_pred cceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCCcccccc---ccCcCccEE-----------------
Confidence 4448899995 79999999999999999998 3332 33331 000000 001111111
Q ss_pred HHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHH-HHH
Q 023126 150 AHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVS 222 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~-~l~ 222 (287)
+ ..++ .........||+||+|+..++.+ +.+++++++||++..+|.. ++. .++
T Consensus 76 ----~---------------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 76 ----F---------------ADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred ----E---------------EecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 0 0000 11234556899999999998766 4788999999999999983 222 233
Q ss_pred Hhhc---CceEEEeCHHHH
Q 023126 223 SMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 223 ~~~~---~~i~vtHd~~~~ 238 (287)
.+.+ ..+++||+.+..
T Consensus 136 ~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 136 ELLERGALVIATTHYGELK 154 (200)
T ss_pred HHHhcCCEEEEECCHHHHH
Confidence 3332 246999986543
No 424
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.34 E-value=2.6e-12 Score=111.12 Aligned_cols=65 Identities=12% Similarity=0.003 Sum_probs=49.0
Q ss_pred CCCCCCCCCcccCCchhhhhhh----ccCccEEEEcCcccCCCh----hhHHHHHHhhcC-----ceEEEeCHHHHHH
Q 023126 176 GSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-----KWFIEVDLDTAMQ 240 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al----~~~a~~li~d~~~lllDe----~~~~~l~~~~~~-----~i~vtHd~~~~~~ 240 (287)
.+..+.+||+||+|++.++.++ +.+|+++++||++..+|+ .+++.+.+..+. .+++||++.....
T Consensus 120 ~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~ 197 (213)
T cd03277 120 QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN 197 (213)
T ss_pred cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence 3456779999999998876443 578999999999999998 455555555432 4799999876654
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.31 E-value=2.8e-12 Score=118.06 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=101.5
Q ss_pred Ccc-ceecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCcccc
Q 023126 73 REI-PVVEAR-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 73 ~~~-~~i~~G-----eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
++. +.|+.| |++..+|+||.|||||+++++|.++ |+.|.- ...-.++|=||.-. +..+-||++.
T Consensus 353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e-----~p~lnVSykpqkis--pK~~~tvR~l 422 (592)
T KOG0063|consen 353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGE-----IPVLNVSYKPQKIS--PKREGTVRQL 422 (592)
T ss_pred eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCc-----ccccceeccccccC--ccccchHHHH
Confidence 555 667776 6889999999999999999999999 998741 12233777777632 2223455543
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhH----HH
Q 023126 147 PKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KD 220 (287)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~----~~ 220 (287)
+..-.+... .+..-+.+..+.+. ...++.+..||||++||++++..+-.+|.+.+.|++...+|-+.. +.
T Consensus 423 l~~kIr~ay----~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askv 498 (592)
T KOG0063|consen 423 LHTKIRDAY----MHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKV 498 (592)
T ss_pred HHHHhHhhh----cCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHH
Confidence 332111110 11222334444443 455778899999999999999999999999999999999997322 12
Q ss_pred HHHhh----cCceEEEeCHHHHHH
Q 023126 221 VSSMF----DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 221 l~~~~----~~~i~vtHd~~~~~~ 240 (287)
+.++. ....+|.||.-.+-.
T Consensus 499 ikRfilhakktafvVEhdfImaTY 522 (592)
T KOG0063|consen 499 IKRFILHAKKTAFVVEHDFIMATY 522 (592)
T ss_pred HHHHHHhccchhhhhhhHHHHHHh
Confidence 22221 122478898766543
No 426
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.31 E-value=7e-12 Score=133.96 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhc---cCCCCCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
..+..+.|..+| ....++.++|||||.||+-+|..|..+ +.++++|||+..|+. .+++.+.++.+ .+
T Consensus 1676 i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tv 1755 (1809)
T PRK00635 1676 IQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSV 1755 (1809)
T ss_pred HHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeE
Confidence 344456666666 356788999999999999999998754 679999999999998 33344444433 35
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|+|+||++++.. +++ |++++.|+|+++.+
T Consensus 1756 ivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1756 IYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 799999999988 665 68999999999875
No 427
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.31 E-value=1.3e-11 Score=103.84 Aligned_cols=57 Identities=12% Similarity=0.039 Sum_probs=45.7
Q ss_pred CCcccCCchhhhhhhc----cCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHH
Q 023126 183 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAM 239 (287)
Q Consensus 183 lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~ 239 (287)
||+||+||++++++++ .+++++++|++...+|. .+.+.+.++... .|++||+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~ 162 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE 162 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence 9999999999999885 68999999999999998 344445544333 479999998764
No 428
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.30 E-value=8.2e-12 Score=103.35 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=78.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+..+.++.|+|||||||||+++.+...+- ...|........ +-+...+. ..+.+
T Consensus 16 i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~~~---------~~g~~~~~------~~~~~------ 71 (162)
T cd03227 16 VTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRSGV---------KAGCIVAA------VSAEL------ 71 (162)
T ss_pred EecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccCcc---------cCCCccee------eEEEE------
Confidence 4455567999999999999999999888776 444433221100 00010000 00000
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc----CccEEEEcCcccCCCh----hhHHHHHHhhc-
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDG----GVWKDVSSMFD- 226 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~----~a~~li~d~~~lllDe----~~~~~l~~~~~- 226 (287)
++ ....||+||+||+.++.++.. +++++++||+.-.+|. .+.+.+.+...
T Consensus 72 ------------i~---------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 72 ------------IF---------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred ------------eh---------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 00 011299999999999999875 6799999999999998 34444554433
Q ss_pred --CceEEEeCHHHHHH
Q 023126 227 --EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 --~~i~vtHd~~~~~~ 240 (287)
..+++||+.+....
T Consensus 131 ~~~vii~TH~~~~~~~ 146 (162)
T cd03227 131 GAQVIVITHLPELAEL 146 (162)
T ss_pred CCEEEEEcCCHHHHHh
Confidence 34789999998754
No 429
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.4e-11 Score=113.85 Aligned_cols=172 Identities=16% Similarity=0.095 Sum_probs=94.4
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 130 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~ 130 (287)
|.+.+.+.+..+...+ .+. +.|--|..+||+||||-|||||++.|+..--. .|..=. +-++.
T Consensus 265 IKiEnF~ISA~Gk~LF-----vnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-IPpnID-----------vLlCE 327 (807)
T KOG0066|consen 265 IKIENFDISAQGKLLF-----VNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-IPPNID-----------VLLCE 327 (807)
T ss_pred ceeeeeeeecccceee-----eccceEEEecceecccCCCCCchHHHHHHHHhhhcc-CCCCCc-----------eEeee
Confidence 4455555555555444 444 77899999999999999999999999875321 122211 22333
Q ss_pred CCCCCCCc-----------------------------ccCCccccHHHHHH-hcCCCCCchHHHHHHHHHHhc---cCCC
Q 023126 131 MDGFHLYL-----------------------------SQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLR---NQGS 177 (287)
Q Consensus 131 qd~~~~~~-----------------------------~~ltv~e~i~~~~~-~~~~~~~~~~~~~~~~l~~l~---~~~~ 177 (287)
|.-..-.. ...|+.|.+..... ...........+++++|.-+| ...+
T Consensus 328 QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~ 407 (807)
T KOG0066|consen 328 QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQE 407 (807)
T ss_pred eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhc
Confidence 33111000 00111111111100 000111112334455555555 2345
Q ss_pred CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh--hhH--HHHHHhhcCceEEEeCHHHHHH
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--GVW--KDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--~~~--~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++...+|||++.||++|+||-..|-+|++|+++--||- .+| ..|.....+.++||||..++-.
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~ 474 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDS 474 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHH
Confidence 67779999999999996555555555555555544443 222 3344444456799999988755
No 430
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.26 E-value=5.7e-12 Score=107.97 Aligned_cols=125 Identities=11% Similarity=0.037 Sum_probs=71.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+.+|++++|.||||||||||+++|++..-. +..|....... ..++++.+.-. .+...++
T Consensus 24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~--~~~g~~~~~~~---~~i~~~dqi~~-----~~~~~d~--------- 84 (202)
T cd03243 24 INLGSGRLLLITGPNMGGKSTYLRSIGLAVLL--AQIGCFVPAES---ASIPLVDRIFT-----RIGAEDS--------- 84 (202)
T ss_pred EEEcCCeEEEEECCCCCccHHHHHHHHHHHHH--HHcCCCccccc---cccCCcCEEEE-----EecCccc---------
Confidence 67889999999999999999999999954320 33343211100 01122111100 0010010
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHH-HHHHhhc---C
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMFD---E 227 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~-~l~~~~~---~ 227 (287)
.......++.+++| +..+.+.+.+++++++||++..+|+. +.. .+..+.+ .
T Consensus 85 --------------------i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 85 --------------------ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred --------------------ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 11222344555554 44445556789999999999999982 222 2233322 2
Q ss_pred ceEEEeCHHHHHH
Q 023126 228 KWFIEVDLDTAMQ 240 (287)
Q Consensus 228 ~i~vtHd~~~~~~ 240 (287)
.|++||+.+....
T Consensus 144 vi~~tH~~~~~~~ 156 (202)
T cd03243 144 TLFATHFHELADL 156 (202)
T ss_pred EEEECChHHHHHH
Confidence 4799999888765
No 431
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.20 E-value=1.1e-11 Score=106.48 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=80.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE-EEeCCCCCCCcccCCccccHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT-VLPMDGFHLYLSQLDAMEDPKEA 150 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~-~v~qd~~~~~~~~ltv~e~i~~~ 150 (287)
+++ +.+..|++++|.||||+||||++++++++.-- .. +| ++|-. ...+++.+++.
T Consensus 20 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l--a~--------------~G~~vpa~-----~~~l~~~d~I~-- 76 (204)
T cd03282 20 NDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIM--AQ--------------IGCFVPAE-----YATLPIFNRLL-- 76 (204)
T ss_pred eeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHH--HH--------------cCCCcchh-----hcCccChhhee--
Confidence 777 88999999999999999999999999987530 00 11 11111 01123333331
Q ss_pred HHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh-----hHHHHHH
Q 023126 151 HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSS 223 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~-----~~~~l~~ 223 (287)
..++. ........||.|++|. ..+..++.++.++++||+.-..|.. .+..++.
T Consensus 77 -------------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~ 136 (204)
T cd03282 77 -------------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILEC 136 (204)
T ss_pred -------------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 12221 2234556788899865 4556677888999999999988772 2333333
Q ss_pred hhc---CceEEEeCHHHHHH
Q 023126 224 MFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 224 ~~~---~~i~vtHd~~~~~~ 240 (287)
+.+ ..+++||+.+.+..
T Consensus 137 l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 137 LIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HHhcCCEEEEECChHHHHHH
Confidence 332 35799999998864
No 432
>PRK07667 uridine kinase; Provisional
Probab=99.19 E-value=1.3e-10 Score=99.02 Aligned_cols=172 Identities=17% Similarity=0.195 Sum_probs=101.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCch
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN 161 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~ 161 (287)
-+|||.|++|||||||++.|...+. ..| ..+..++.|+++..........+.... ..+ ....+
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~----~~~----------~~~~~i~~Dd~~~~~~~~~~~~~~~~~-~~~--~~~~d 80 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMK----QEG----------IPFHIFHIDDYIVERNKRYHTGFEEWY-EYY--YLQWD 80 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH----hCC----------CcEEEEEcCcccchhhhHHhcCCCchh-hhh--hhhhh
Confidence 5899999999999999999999885 111 125678888765432100000000000 000 01124
Q ss_pred HHHHH-HHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 162 PLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 162 ~~~~~-~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
.+.+. .++..+........|.++.-.+.+..- .....++.++|+|+++++- ..+.++++..|+|+.+.+...+
T Consensus 81 ~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~-----~~~~~~~d~~v~V~~~~~~~~~ 154 (193)
T PRK07667 81 IEWLRQKFFRKLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQR-----KEWRDFFHYMVYLDCPRETRFL 154 (193)
T ss_pred HHHHHHHHHHhhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhh-----hhHHhhceEEEEEECCHHHHHH
Confidence 44443 345666655445555665554443321 1123457899999998532 3567788999999999999988
Q ss_pred HHhhccccCCChHHHHHHHHHhcCcchHH-HHhh--cCCCccEEec
Q 023126 241 RVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMK--SKKNADLVIK 283 (287)
Q Consensus 241 rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~--~~~~aD~i~~ 283 (287)
|++.|. |...+... ..+.+.++ |+.. ++.+||+|++
T Consensus 155 R~~~r~---~~~~~~~~----~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 155 RESEET---QKNLSKFK----NRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHhccc---HhHHHHHH----HHhHHHHHHHHhhcChHhhCcEEeC
Confidence 876422 33333222 23346666 5432 5999999984
No 433
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=7.5e-11 Score=105.92 Aligned_cols=57 Identities=16% Similarity=-0.013 Sum_probs=44.0
Q ss_pred CCCcccCCchhhhhhhcc----CccEEEEcCcccCCChhhH----HHHHHhhc--CceEEEeCHHHH
Q 023126 182 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~~----~a~~li~d~~~lllDe~~~----~~l~~~~~--~~i~vtHd~~~~ 238 (287)
.||+||+||+++|++++. +|+++++|++...+|.... +.+.++.. ..|++||+++..
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~ 236 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVA 236 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHH
Confidence 499999999999976543 8999999999999998433 34444332 246999999864
No 434
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=2e-11 Score=106.16 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=76.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +...++++++|.||||+|||||+++++-.. ++.|-+.+.+....++
T Consensus 21 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~g~~vpa~~~~~-------- 70 (222)
T cd03285 21 NDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIV----------------------LMAQIGCFVPCDSADI-------- 70 (222)
T ss_pred eeEEEeecCCeEEEEECCCCCChHHHHHHHHHHH----------------------HHHHhCCCcCcccEEE--------
Confidence 677 888899999999999999999999988431 1222221111100000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh--ccCccEEEEcCc---ccCCChh--hHHHHHHh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG--VWKDVSSM 224 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al--~~~a~~li~d~~---~lllDe~--~~~~l~~~ 224 (287)
..+.+++..++.. +.....+|.|++++..++.++ +.++.++++||+ +..+|.. .+..+..+
T Consensus 71 -----------~~~~~il~~~~l~-d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 71 -----------PIVDCILARVGAS-DSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred -----------eccceeEeeeccc-cchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 0011222233322 122567999999999998888 788999999999 7778872 12222222
Q ss_pred h----cCceEEEeCHHH
Q 023126 225 F----DEKWFIEVDLDT 237 (287)
Q Consensus 225 ~----~~~i~vtHd~~~ 237 (287)
. ...+++||+.+.
T Consensus 139 ~~~~~~~vlisTH~~el 155 (222)
T cd03285 139 ATQIKCFCLFATHFHEL 155 (222)
T ss_pred HhcCCCeEEEEechHHH
Confidence 2 134689997444
No 435
>PLN02796 D-glycerate 3-kinase
Probab=99.11 E-value=1.3e-09 Score=99.73 Aligned_cols=172 Identities=22% Similarity=0.261 Sum_probs=102.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCc--cccHHH-HHHhcCCCCC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA--MEDPKE-AHARRGAPWT 159 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv--~e~i~~-~~~~~~~~~~ 159 (287)
++||+|+||||||||++.|.+++. +. | ..++.+++|++++...+... .++... ....+|.+..
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~lL~---~~-g----------~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgT 167 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYLFN---AT-G----------RRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGS 167 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc---cc-C----------CceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCch
Confidence 499999999999999999999997 43 1 12567788887654321110 011111 1223456777
Q ss_pred chHHHHHHHHHHhc----cCCCCCCCCCCc----ccCCchhhhh--hhccCccEEEEcCcccCCCh--------------
Q 023126 160 FNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDDI--LVGLQHKVVIVDGNYLFLDG-------------- 215 (287)
Q Consensus 160 ~~~~~~~~~l~~l~----~~~~~~~~~lSg----G~~qrv~ia~--al~~~a~~li~d~~~lllDe-------------- 215 (287)
.+.+.+.+.++.+. ......+|.|+. |+..|..-.. .+..+++++|+|++++..-+
T Consensus 168 hDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~ 247 (347)
T PLN02796 168 HDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLE 247 (347)
T ss_pred hHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHH
Confidence 78877888888776 334456665554 4455654322 22356899999999999843
Q ss_pred hhHHHHHHh-------hcCce-EEEeCHHHHHHHHh---hccc---cCCChHHHHHHHHHhcCcchHH
Q 023126 216 GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVL---KRHI---STGKPPDVAKWRIEYNDRPNAE 269 (287)
Q Consensus 216 ~~~~~l~~~-------~~~~i-~vtHd~~~~~~rv~---gr~v---~~G~~~ev~~~~~~~~~~~~~~ 269 (287)
.+.+.|... .+..| +-.-|.+.+.++.. .+.. ..|..++.+..+.+. ..|+++
T Consensus 248 ~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~-~mP~y~ 314 (347)
T PLN02796 248 VVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSR-YMPAYK 314 (347)
T ss_pred HHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHHHH
Confidence 111222222 23333 34577888877444 1121 235677777666553 356665
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.08 E-value=8.1e-10 Score=95.51 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=73.8
Q ss_pred ceecCC--eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHh
Q 023126 76 PVVEAR--HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~G--eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~ 153 (287)
+.+..+ .++.|.||||+|||||+|.+....-. +..|....... -.++|+.|....+.. ..++.+++.
T Consensus 22 ~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l--a~~G~~v~a~~---~~~~~~d~i~~~l~~-~~si~~~~S----- 90 (213)
T cd03281 22 TEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL--AHIGSFVPADS---ATIGLVDKIFTRMSS-RESVSSGQS----- 90 (213)
T ss_pred EEecCCCceEEEEECCCCCChHHHHHHHHHHHHH--HhCCCeeEcCC---cEEeeeeeeeeeeCC-ccChhhccc-----
Confidence 345554 78999999999999999999843210 45565443221 225665554221111 112111110
Q ss_pred cCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh-----hHHHHHHhhc--
Q 023126 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSSMFD-- 226 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~-----~~~~l~~~~~-- 226 (287)
.+.. +-||++++.+++..+.++++||+.-.+|+. .+..++.+.+
T Consensus 91 ----------~f~~-------------------el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~ 141 (213)
T cd03281 91 ----------AFMI-------------------DLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRG 141 (213)
T ss_pred ----------hHHH-------------------HHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcC
Confidence 0111 114556666677779999999999999961 2334444432
Q ss_pred ----CceEEEeCHHHHHH
Q 023126 227 ----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 227 ----~~i~vtHd~~~~~~ 240 (287)
..+++||+.+.+..
T Consensus 142 ~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 142 PECPRVIVSTHFHELFNR 159 (213)
T ss_pred CCCcEEEEEcChHHHHHh
Confidence 24689999998866
No 437
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.01 E-value=5.6e-09 Score=97.40 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=102.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCc--cccHHH-HHHhcCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA--MEDPKE-AHARRGAP 157 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv--~e~i~~-~~~~~~~~ 157 (287)
--++||.|++|||||||++.|.++++ +. | ..++.+++|++++...+..- ..|... .....|.+
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g----------~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~P 277 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFR---VT-G----------RKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNA 277 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc---cc-C----------CceEEEEECCccCChHHHHHHHhhCccchhhcccCCC
Confidence 37999999999999999999999997 43 1 23677888988754321110 001000 01223556
Q ss_pred CCchHHHHHHHHHHhc----cCCCCCCCCCCc----ccCCchhhhhh--hccCccEEEEcCcccCCCh------------
Q 023126 158 WTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDDIL--VGLQHKVVIVDGNYLFLDG------------ 215 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~----~~~~~~~~~lSg----G~~qrv~ia~a--l~~~a~~li~d~~~lllDe------------ 215 (287)
..++.....+.|+.+. .+....+|.|+. |+..|+.-..+ +..+++++|+|++++++-+
T Consensus 278 GTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~ 357 (460)
T PLN03046 278 GSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQ 357 (460)
T ss_pred ccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChh
Confidence 6777766666666662 344455665543 44557654332 3456799999999999843
Q ss_pred --hhHHHHHHh-------hcCce-EEEeCHHHHHHHHhh---ccc---cCCChHHHHHHHHHhcCcchHHH
Q 023126 216 --GVWKDVSSM-------FDEKW-FIEVDLDTAMQRVLK---RHI---STGKPPDVAKWRIEYNDRPNAEL 270 (287)
Q Consensus 216 --~~~~~l~~~-------~~~~i-~vtHd~~~~~~rv~g---r~v---~~G~~~ev~~~~~~~~~~~~~~~ 270 (287)
.+-+.|... .+..| +-.-|.+.+.+|... +.. ..|..+|.+..+.+ ...|.++.
T Consensus 358 l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~-~YmPaY~~ 427 (460)
T PLN03046 358 LEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVS-RYLPAYKA 427 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HhhhHHHH
Confidence 011222222 22223 335777888774441 111 22667777777665 44677763
No 438
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.01 E-value=2.2e-10 Score=87.76 Aligned_cols=63 Identities=19% Similarity=0.076 Sum_probs=47.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC--------CCceeEEEeCCCCCCCcccCCc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~--------~~~~i~~v~qd~~~~~~~~ltv 143 (287)
+++ +.+++|++++|+||||||||||++++. +|++.+.+.+ ..+.+++.+|+ .++ .++
T Consensus 6 ~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~---~ti 71 (107)
T cd00820 6 HGVLVDVYGKVGVLITGDSGIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE---IRL 71 (107)
T ss_pred EeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch---hhH
Confidence 666 899999999999999999999999975 3566665543 23446777777 222 588
Q ss_pred cccHHH
Q 023126 144 MEDPKE 149 (287)
Q Consensus 144 ~e~i~~ 149 (287)
++||.+
T Consensus 72 ~~Ni~~ 77 (107)
T cd00820 72 RLNIFL 77 (107)
T ss_pred Hhhcee
Confidence 899876
No 439
>PRK08233 hypothetical protein; Provisional
Probab=98.95 E-value=8.6e-09 Score=86.17 Aligned_cols=79 Identities=27% Similarity=0.401 Sum_probs=50.6
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChH---HHHHHHHHhcCcchHH-HHhhcCCC
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPP---DVAKWRIEYNDRPNAE-LIMKSKKN 277 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~---ev~~~~~~~~~~~~~~-~i~~~~~~ 277 (287)
.+++.|.++..+. +.+.+..+..|++..+.+....|++.|...+...+ +....++. ..++.+. ++.+.+..
T Consensus 79 ~~vivd~~~~~~~----~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~ 153 (182)
T PRK08233 79 DYIIVDYPFAYLN----SEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN-YARPLYLEALHTVKPN 153 (182)
T ss_pred eEEEEeeehhhcc----HHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH-HHHHHHHHHhhcCccC
Confidence 5677787766544 34666778889999999999887775543322222 22333333 3345454 66776778
Q ss_pred ccEEeccC
Q 023126 278 ADLVIKSI 285 (287)
Q Consensus 278 aD~i~~~~ 285 (287)
||+++++.
T Consensus 154 ~~~vId~~ 161 (182)
T PRK08233 154 ADIVLDGA 161 (182)
T ss_pred CeEEEcCC
Confidence 99998754
No 440
>PRK06547 hypothetical protein; Provisional
Probab=98.95 E-value=1.2e-08 Score=85.30 Aligned_cols=149 Identities=14% Similarity=0.072 Sum_probs=85.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~ 160 (287)
-.+++|.|++|||||||.+.|+..+. +.++++|.++.....+ + .
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~-------------------~~~~~~d~~~~~~~~~---------------~--~ 58 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTG-------------------FQLVHLDDLYPGWHGL---------------A--A 58 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC-------------------CCeecccceecccccC---------------C--h
Confidence 35889999999999999999998764 3456677653221110 0 1
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc-----CceEEEeCH
Q 023126 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDL 235 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~-----~~i~vtHd~ 235 (287)
..+.+.+.+..-+.. ...+ |+.-...+... ..+.++.++|.|+...+.+ .+++..+ ..|+++-+.
T Consensus 59 ~~~~l~~~~l~~g~~--~~~~-yd~~~~~~~~~--~~l~~~~vVIvEG~~al~~-----~~r~~~d~~g~v~~I~ld~~~ 128 (172)
T PRK06547 59 ASEHVAEAVLDEGRP--GRWR-WDWANNRPGDW--VSVEPGRRLIIEGVGSLTA-----ANVALASLLGEVLTVWLDGPE 128 (172)
T ss_pred HHHHHHHHHHhCCCC--ceec-CCCCCCCCCCc--EEeCCCCeEEEEehhhccH-----HHHHHhccCCCEEEEEEECCH
Confidence 122222222221111 1111 22221111111 1223467888999877754 3455555 568999999
Q ss_pred HHHHHHHhhccccCCChHHHHHHHHHhcCcchHH-HH--hhcCCCccEEec
Q 023126 236 DTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LI--MKSKKNADLVIK 283 (287)
Q Consensus 236 ~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i--~~~~~~aD~i~~ 283 (287)
++...|++.|.. . ...+| ....+.++ |+ ++++++||+++.
T Consensus 129 ~vr~~R~~~Rd~---~----~~~~~-~~w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 129 ALRKERALARDP---D----YAPHW-EMWAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHhcCc---h----hhHHH-HHHHHHHHHHHhcCCChhccEEEec
Confidence 999999887753 2 22222 23346666 54 557999999874
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.94 E-value=3.4e-09 Score=93.63 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=85.8
Q ss_pred cCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc--c--CCCCCC---------ceeEEEeCCCCCCCc
Q 023126 72 RREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF--D--SQVKPP---------DVATVLPMDGFHLYL 138 (287)
Q Consensus 72 ~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~--~--~~~~~~---------~~i~~v~qd~~~~~~ 138 (287)
.|..+.+.+|+.++|+|++|+|||||++.|++.+. ...+++. + -+.... ..+-++.+-+. .+.
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~---~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~ 82 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT---KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPE 82 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc---cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHH
Confidence 36778899999999999999999999999999886 4433211 1 111000 00111111110 000
Q ss_pred ccCC-ccccHHHHHH--hcCCCC---CchHHHHHHHHHHhccCCCCCCCCCCccc--------CCchhhhhhhccCccEE
Q 023126 139 SQLD-AMEDPKEAHA--RRGAPW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGV--------GDPVEDDILVGLQHKVV 204 (287)
Q Consensus 139 ~~lt-v~e~i~~~~~--~~~~~~---~~~~~~~~~~l~~l~~~~~~~~~~lSgG~--------~qrv~ia~al~~~a~~l 204 (287)
.... .+.-...... ..|..- -....++.+..+.+...... .+|||+ +||+++|+++..++.++
T Consensus 83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~---~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt 159 (249)
T cd01128 83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGK---ILSGGVDANALHKPKRFFGAARNIEEGGSLT 159 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCC---CCCCCcChhhhhhhHHHHHHhcCCCCCCceE
Confidence 0000 0000000000 011000 01122333333333322222 359999 99999999987788898
Q ss_pred EEcCcccCCCh------hhHHHHHHhhcCceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG------GVWKDVSSMFDEKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe------~~~~~l~~~~~~~i~vtHd~~~~~~ 240 (287)
++ .+.++|. .+.+.++...+..|+++|.+.....
T Consensus 160 ~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~ 199 (249)
T cd01128 160 II--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRI 199 (249)
T ss_pred Ee--eeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCC
Confidence 88 7777772 2233333334566899999988755
No 442
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.89 E-value=3.5e-10 Score=95.66 Aligned_cols=62 Identities=6% Similarity=-0.074 Sum_probs=39.8
Q ss_pred CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----h-HHHHHHhhc----CceEEEeCHHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD----EKWFIEVDLDTAM 239 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~-~~~l~~~~~----~~i~vtHd~~~~~ 239 (287)
.....+||+|++|...+. ..+.+++++++||++..+|+. + +..++.+.+ ..+++||+.+...
T Consensus 56 ~~~~s~fs~~~~~l~~~l-~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~ 126 (185)
T smart00534 56 AQGLSTFMVEMKETANIL-KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTK 126 (185)
T ss_pred hccccHHHHHHHHHHHHH-HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHH
Confidence 345567888877644432 234578999999999999983 2 222333322 2468999997543
No 443
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.87 E-value=9.2e-10 Score=101.70 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=96.2
Q ss_pred cceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEe----CCCCCCC-cccCC---cccc
Q 023126 75 IPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP----MDGFHLY-LSQLD---AMED 146 (287)
Q Consensus 75 ~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~----qd~~~~~-~~~lt---v~e~ 146 (287)
....++|++.|++|.||-||||-+++++|.++ |.-|..-.. .+....++|+- |+.+.-. ...+. -.+.
T Consensus 94 lp~prpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~p-p~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 94 LPIPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNP-PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CCCCCcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCC-cchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 34578999999999999999999999999999 987763211 11111111110 0100000 00000 0011
Q ss_pred HHHH-HHhcC----C-CCCchHHHHHHHHH--HhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh---
Q 023126 147 PKEA-HARRG----A-PWTFNPLLLLNCLK--NLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--- 215 (287)
Q Consensus 147 i~~~-~~~~~----~-~~~~~~~~~~~~l~--~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--- 215 (287)
+... ....+ . ....+.+...++++ .++...++.+.+||||+.||.++|++.+..+++.++|++-..||-
T Consensus 170 vd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQR 249 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQR 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHh
Confidence 1110 00000 0 00011111222222 234556788999999999999999999999999999999999996
Q ss_pred -hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 216 -GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 -~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
.....++.+.. ..|+|.||+.+.-.
T Consensus 250 LkaA~~IRsl~~p~~YiIVVEHDLsVLDy 278 (592)
T KOG0063|consen 250 LKAAITIRSLINPDRYIIVVEHDLSVLDY 278 (592)
T ss_pred hhHHHHHHHhhCCCCeEEEEEeechHHHh
Confidence 22234444443 35789999998765
No 444
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.87 E-value=8.8e-09 Score=92.01 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=33.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.-++|+||||||||||+++|+|++. |++|++.++|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEE
Confidence 5789999999999999999999999 999999887744
No 445
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.86 E-value=1.3e-09 Score=110.21 Aligned_cols=124 Identities=9% Similarity=0.036 Sum_probs=75.8
Q ss_pred ceecCC-eEEEEECCCCCCHHHHHHHHHHH-hcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHh
Q 023126 76 PVVEAR-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 153 (287)
Q Consensus 76 ~~i~~G-eivgIiG~nGsGKSTLlk~L~G~-l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~ 153 (287)
+.+..+ ++++|.||||+|||||+|+|+|. +. +..|. ++|...... +..++.+.
T Consensus 316 i~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~-------------~Vpa~~~~~----~~~~d~i~----- 370 (771)
T TIGR01069 316 LNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGI-------------PIPANEHSE----IPYFEEIF----- 370 (771)
T ss_pred eEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCC-------------CccCCcccc----ccchhhee-----
Confidence 567666 89999999999999999999998 44 44441 222221100 01101000
Q ss_pred cCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----h-HHHHHHhhc--
Q 023126 154 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----V-WKDVSSMFD-- 226 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~-~~~l~~~~~-- 226 (287)
.... +.+.+ .....+||+||++++.+...+ .++.++++|++...+|+. + +..+..+.+
T Consensus 371 ~~i~---~~~si-----------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g 435 (771)
T TIGR01069 371 ADIG---DEQSI-----------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQN 435 (771)
T ss_pred eecC---hHhHH-----------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 0000 11111 123567899999988886554 578999999999999982 2 223333322
Q ss_pred -CceEEEeCHHHHH
Q 023126 227 -EKWFIEVDLDTAM 239 (287)
Q Consensus 227 -~~i~vtHd~~~~~ 239 (287)
.++++||+.+...
T Consensus 436 ~~viitTH~~eL~~ 449 (771)
T TIGR01069 436 AQVLITTHYKELKA 449 (771)
T ss_pred CEEEEECChHHHHH
Confidence 2468899988754
No 446
>COG4240 Predicted kinase [General function prediction only]
Probab=98.85 E-value=1.5e-08 Score=86.62 Aligned_cols=126 Identities=29% Similarity=0.438 Sum_probs=90.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccC-CccccHHHHHHhcC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL-DAMEDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~l-tv~e~i~~~~~~~~ 155 (287)
...+.-++||.||.|||||||.-.|..++. ...| .++++++.|++++...+. ...++..-....+|
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~---~kg~----------ert~~lSLDDlYlthadrl~La~q~npllq~RG 112 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA---AKGL----------ERTATLSLDDLYLTHADRLRLARQVNPLLQTRG 112 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH---Hhcc----------cceEEeehhhhhcchHHHHHHHHhcCchhcccC
Confidence 344456999999999999999999999987 2222 237889999887654211 01111111234567
Q ss_pred CCCCchHHHHHHHHHHhcc-CCCCCCCCCCc----ccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 156 APWTFNPLLLLNCLKNLRN-QGSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~-~~~~~~~~lSg----G~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
.|...|.....++|+.+.. .....+|.|.. |...|..-..+...+..++|+|++++..-+
T Consensus 113 lpGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP 177 (300)
T COG4240 113 LPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP 177 (300)
T ss_pred CCCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence 8899999988899988763 34457778876 888887766666666899999999998765
No 447
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.85 E-value=9.7e-09 Score=89.00 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=26.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+++ +...+ ++++|.||||||||||+|.+++..
T Consensus 22 n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~ 54 (216)
T cd03284 22 NDTELDPER-QILLITGPNMAGKSTYLRQVALIA 54 (216)
T ss_pred eeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence 555 55555 899999999999999999998754
No 448
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.85 E-value=4.2e-09 Score=94.31 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=46.4
Q ss_pred CCCCCcccCCchhhhhhhc---------cCccEEEEcCcccCCChhhHHHHHHhhc---CceEEEeCHHHHH
Q 023126 180 APSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAM 239 (287)
Q Consensus 180 ~~~lSgG~~qrv~ia~al~---------~~a~~li~d~~~lllDe~~~~~l~~~~~---~~i~vtHd~~~~~ 239 (287)
...+|+||+|+++++++++ ..+.++++|+++..||+...+.+.+.+. .+++++|+.+.+.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~ 252 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFD 252 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhcc
Confidence 3368999999999999874 6889999999999999965555555442 4567788776654
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.81 E-value=1.1e-08 Score=98.02 Aligned_cols=97 Identities=22% Similarity=0.321 Sum_probs=64.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+..|.+++++||||+||||++..|++.+. +..|. ..++++.+|.+ ..++.|++.+....++
T Consensus 251 ~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr~~AeilG 313 (484)
T PRK06995 251 ALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLRIYGKILG 313 (484)
T ss_pred ccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHHHHHHHhC
Confidence 4467899999999999999999999999886 55553 24788998864 2678899998887777
Q ss_pred CCCCc--hHHHHHHHHHHhccCCCCCCCCCCcccCCch
Q 023126 156 APWTF--NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 156 ~~~~~--~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv 191 (287)
.+... +.......+..+.......+.+ .|+.|+.
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDT--aGr~~~d 349 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDT--IGMSQRD 349 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCC--CCcChhh
Confidence 65322 2222222333444443444555 4544443
No 450
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.80 E-value=3.1e-08 Score=86.08 Aligned_cols=43 Identities=26% Similarity=0.229 Sum_probs=36.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccccC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDS 118 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G-~l~~~~p~~G~i~~~ 118 (287)
+++ +.+.+|++++|.||||+||||+++++++ .+. +..|.....
T Consensus 22 n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~~v~a 66 (222)
T cd03287 22 NDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGSFVPA 66 (222)
T ss_pred EeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCCEEEc
Confidence 666 8899999999999999999999999999 555 778875443
No 451
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.79 E-value=1.1e-08 Score=86.62 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=37.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
+.++.|+.++|+||||||||||+++|+|+++ |+.|.+.+.+
T Consensus 20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied 60 (186)
T cd01130 20 LAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIED 60 (186)
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECC
Confidence 5688999999999999999999999999998 8888876654
No 452
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.78 E-value=9e-09 Score=89.06 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=40.3
Q ss_pred CCCCcccCCchhhhhhh----ccCccEEEEcCcccCCCh----hhHHHHHHhh--cCceEEEeCHHHHHH
Q 023126 181 PSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al----~~~a~~li~d~~~lllDe----~~~~~l~~~~--~~~i~vtHd~~~~~~ 240 (287)
..+||||+.++++|..+ ..+..++++|+...-||+ .+.+.|.++. .+.|++||+......
T Consensus 135 ~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~ 204 (220)
T PF02463_consen 135 EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFED 204 (220)
T ss_dssp TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 39999999999987664 346778899999999998 4445555555 346899999887654
No 453
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.72 E-value=8.7e-09 Score=105.88 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=69.8
Q ss_pred HHHHhccC---CCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCH
Q 023126 168 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 235 (287)
Q Consensus 168 ~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~ 235 (287)
.|+.++.. .++++.+|||||+||+.||.+++..+ +++++|||+..||+ .+++.|+++.+ .+|+++|++
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 45555532 57889999999999999999998876 89999999999999 44555555543 346999999
Q ss_pred HHHHH--HHh----------hccccCCChHHHHH
Q 023126 236 DTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 236 ~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
+++.. |++ |+++..|+++++..
T Consensus 552 ~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 552 DTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred HHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 99765 443 47888898888743
No 454
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.71 E-value=7.2e-09 Score=98.09 Aligned_cols=44 Identities=18% Similarity=0.245 Sum_probs=39.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-ccccCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFDSQVK 121 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G-~i~~~~~~ 121 (287)
+++ +.+++||+++|+||||||||||++ .|+.. |++| +|.++|..
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~ldg~~ 68 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFLDATH 68 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEECCEE
Confidence 777 999999999999999999999999 67777 8888 69888854
No 455
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=3.7e-08 Score=101.16 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh-
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL- 243 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~- 243 (287)
.++++.+|||||+||+.||.+++.++ .++|+|||+..||+ .+++.+.++.+ .+|+|+||++++.. +++
T Consensus 481 l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~ 560 (924)
T TIGR00630 481 LSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVID 560 (924)
T ss_pred cCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEE
Confidence 47788999999999999999998875 89999999999998 34455555543 34699999998765 333
Q ss_pred ---------hccccCCChHHHH
Q 023126 244 ---------KRHISTGKPPDVA 256 (287)
Q Consensus 244 ---------gr~v~~G~~~ev~ 256 (287)
|++++.|+++++.
T Consensus 561 LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 561 IGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred ecccccCCCCEEeeccCHHHHh
Confidence 4678889888864
No 456
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.57 E-value=2.1e-08 Score=101.77 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=73.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCC
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT 159 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~ 159 (287)
.+.++.|.|||++||||++|.+....-- +..| .++|-... ..+.+++++.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m--aq~G-------------~~vpa~~~----~~i~~~~~i~----------- 375 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM--AKSG-------------LPIPANEP----SEIPVFKEIF----------- 375 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH--HHhC-------------CCcccCCC----ccccccceEE-----------
Confidence 4568899999999999999999754210 1222 12222210 0112222221
Q ss_pred chHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----hHH-HHHHhhc---Cce
Q 023126 160 FNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWK-DVSSMFD---EKW 229 (287)
Q Consensus 160 ~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~-~l~~~~~---~~i 229 (287)
..+++ ......++||+||++++.++.++ ..+.++++|++...+|+. +.. .+..+.+ .++
T Consensus 376 ----------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vI 444 (782)
T PRK00409 376 ----------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKII 444 (782)
T ss_pred ----------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 11221 11245678999999999997776 577899999999999982 222 2222222 246
Q ss_pred EEEeCHHHHHH
Q 023126 230 FIEVDLDTAMQ 240 (287)
Q Consensus 230 ~vtHd~~~~~~ 240 (287)
++||+.+....
T Consensus 445 itTH~~el~~~ 455 (782)
T PRK00409 445 ATTHYKELKAL 455 (782)
T ss_pred EECChHHHHHH
Confidence 89999887654
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.56 E-value=8.7e-07 Score=80.88 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=32.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+.++.|+.++|+|++|||||||+++|+++++ ++.|.+
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv 175 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERII 175 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEE
Confidence 5688999999999999999999999999997 766643
No 458
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.52 E-value=1.3e-06 Score=73.52 Aligned_cols=175 Identities=21% Similarity=0.270 Sum_probs=108.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH--------HHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HARR 154 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~--------~~~~ 154 (287)
++|+.||.|||||||.-.|--.+...| .| ...+++++.|+|++.. .+...+. ...+
T Consensus 33 ~igfSgPQGsGKstl~~ald~~lt~Ky--~~---------E~s~~~~SvDDFYLTh-----e~Q~eL~k~npnN~Llq~R 96 (282)
T KOG2878|consen 33 VIGFSGPQGSGKSTLVFALDYKLTKKY--IQ---------EYSSATISVDDFYLTH-----EGQAELRKKNPNNALLQYR 96 (282)
T ss_pred EEEecCCCCCCceeehhhhHHHHHHHh--cc---------ccceEEEEecceeeec-----hhHHHHHhhCCCChhhccC
Confidence 899999999999999988877665222 11 1137888888886543 3333332 2345
Q ss_pred CCCCCchHHHHHHHHHHhc----cCCCCCCCCCC----cccCCchhhhhhhc-cCccEEEEcCcccCCCh----------
Q 023126 155 GAPWTFNPLLLLNCLKNLR----NQGSVYAPSFD----HGVGDPVEDDILVG-LQHKVVIVDGNYLFLDG---------- 215 (287)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~----~~~~~~~~~lS----gG~~qrv~ia~al~-~~a~~li~d~~~lllDe---------- 215 (287)
|.+...|...+.+.|..+. +.....+|.|. +|...|..-..+.- .+..++|+|++++.+.+
T Consensus 97 GlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d 176 (282)
T KOG2878|consen 97 GLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVD 176 (282)
T ss_pred CCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccC
Confidence 6777888887777777664 22234455333 45556655544432 24688999999998876
Q ss_pred -------hhHHHHH---Hh----hcC-ceEEEeCHHHHHHHHh------hccccCCChHHHHHHHHHhcCcchHHHHhhc
Q 023126 216 -------GVWKDVS---SM----FDE-KWFIEVDLDTAMQRVL------KRHISTGKPPDVAKWRIEYNDRPNAELIMKS 274 (287)
Q Consensus 216 -------~~~~~l~---~~----~~~-~i~vtHd~~~~~~rv~------gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~ 274 (287)
.+-+.+. ++ .+. +++-+.|++-+.++.+ ...+..|..+|....+- .+.-|.+++.+|+
T Consensus 177 ~l~Gdl~~VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~FV-~rYmP~Yk~YL~t 255 (282)
T KOG2878|consen 177 PLQGDLEVVNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVNDFV-SRYMPAYKAYLPT 255 (282)
T ss_pred cccccHHHHhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHHHH-HhhhhHHHhhhhh
Confidence 0111111 11 122 2466788888888444 23456788888766654 3556778755553
No 459
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=3.4e-07 Score=87.74 Aligned_cols=192 Identities=26% Similarity=0.390 Sum_probs=128.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH---Hhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARR 154 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~---~~~ 154 (287)
...--++|+.|.++|||||.+..+..-+... +.+| ....+..+.++.++-. +|. +++.... ..+
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~-~~~~--------~~~~v~~ls~~~fY~~---lt~-~~~~~a~~~~~~f 107 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAI-ERDG--------RQPQVVLLSQDSFYKV---LTS-EELAKAQEGKYNF 107 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhh-hhcc--------CCCeEEEeecHHHHHh---hch-HHHHHhhhccccc
Confidence 3444588999999999999776666555421 2233 1223566666644321 232 3333222 234
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeC
Q 023126 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd 234 (287)
..+.+.+.+.+...++.+..+....++-|+.=--+|..--..++.++.++++++-+.+.| .+++++.+..+|++-|
T Consensus 108 ~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd----~~~~~l~~~k~fvd~~ 183 (473)
T KOG4203|consen 108 DHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYD----ERVRDLFTMKLFVDTD 183 (473)
T ss_pred cCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhH----HHHHHHhcceEEEecC
Confidence 456677777777777666666666666665544444332223455688899999999888 5778888889999999
Q ss_pred HHHHHHHHh-hccccCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 235 LDTAMQRVL-KRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 235 ~~~~~~rv~-gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
.+....+++ |.+.+.|...+-+...+..+.+|.+. |++|.+++||+++|...
T Consensus 184 ~d~rla~ri~r~~~~~g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~ 237 (473)
T KOG4203|consen 184 ADVRLARRILRDIVERGRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGG 237 (473)
T ss_pred cchhhHHHHhcchhhhcccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccc
Confidence 999988555 66667887766555555557788887 99999999999998754
No 460
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.49 E-value=1.7e-07 Score=88.66 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=54.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc---cccCCC--------------CCCceeEEEeCCCCC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQV--------------KPPDVATVLPMDGFH 135 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~---i~~~~~--------------~~~~~i~~v~qd~~~ 135 (287)
++++.+.+|++++|+|+||+|||||+++|+|+.+ ++.+. +-..+. ..+..+++.+++...
T Consensus 147 D~ll~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~---~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~ 223 (434)
T PRK07196 147 NGLLTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ---ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESP 223 (434)
T ss_pred cceEeEecceEEEEECCCCCCccHHHHHHhcccC---CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCCh
Confidence 7779999999999999999999999999999987 77532 211111 112357888888543
Q ss_pred CCcccCCccccHHHHHHhc
Q 023126 136 LYLSQLDAMEDPKEAHARR 154 (287)
Q Consensus 136 ~~~~~ltv~e~i~~~~~~~ 154 (287)
.. .+++.++.......+
T Consensus 224 ~~--rl~a~e~a~~iAEyf 240 (434)
T PRK07196 224 LM--RIKATELCHAIATYY 240 (434)
T ss_pred hh--hHHHHHHHHHHHHHh
Confidence 33 367777776655544
No 461
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.47 E-value=4.7e-07 Score=85.46 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=61.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
+.+|++++|+||||+|||||++.|++.+. -..| ...++++..|.+. ....+.+.......+.+
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~~---------~~~v~~i~~d~~r-----igalEQL~~~a~ilGvp 250 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRHG---------ADKVALLTTDSYR-----IGGHEQLRIYGKLLGVS 250 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC---------CCeEEEEecCCcc-----hhHHHHHHHHHHHcCCc
Confidence 57899999999999999999999999652 1111 1236777777542 35566777666666665
Q ss_pred CC--chHHHHHHHHHHhccCCCCCCCCCCcccCCchh
Q 023126 158 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 158 ~~--~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ 192 (287)
.. .+...+...+..+.......+.+ .|+.||..
T Consensus 251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd~ 285 (420)
T PRK14721 251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRDQ 285 (420)
T ss_pred eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcchH
Confidence 32 23334445555554443334444 58888754
No 462
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.46 E-value=2.1e-07 Score=88.25 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=58.3
Q ss_pred ccccCccccccccc-chhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC---CC-----
Q 023126 51 VFGKTRSLVQNKTS-LKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VK----- 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~---~~----- 121 (287)
.++.++++..|... .++ |.+..+.+|++++|+|+||||||||+++|+++.+ |+.|.+.+.| .+
T Consensus 139 ~~~r~~v~~~l~TGi~aI-----D~L~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~ 210 (450)
T PRK06002 139 AMTRARVETGLRTGVRVI-----DIFTPLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFL 210 (450)
T ss_pred CeEeecceEEcCCCcEEe-----eeeceecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHh
Confidence 55666777777543 333 6667899999999999999999999999999998 9998876543 21
Q ss_pred -------CCceeEEEeCCCC
Q 023126 122 -------PPDVATVLPMDGF 134 (287)
Q Consensus 122 -------~~~~i~~v~qd~~ 134 (287)
..+.+++++|.+.
T Consensus 211 ~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 211 EDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHHHHhhCCeEEEEEcCCC
Confidence 1245889998864
No 463
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.43 E-value=6.5e-07 Score=77.64 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+++ +..++|++++|.||||+||||+++.+++..
T Consensus 21 ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~ 54 (218)
T cd03286 21 NDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV 54 (218)
T ss_pred eeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence 777 888899999999999999999999999874
No 464
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.40 E-value=1.2e-06 Score=76.64 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=26.9
Q ss_pred eecCCeEEEEECCCCCCHHHH-HHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTL-AAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTL-lk~L~G~l~ 106 (287)
.+.+|+++.|.|+|||||||| ++.+.+.++
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~ 50 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ 50 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 378999999999999999999 588888775
No 465
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.37 E-value=7.8e-08 Score=82.89 Aligned_cols=46 Identities=7% Similarity=-0.091 Sum_probs=35.3
Q ss_pred CCCCCcc--cCCchhhhhhhccCccEEEEcCcc-----cCCChhhHHHHHHhh
Q 023126 180 APSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMF 225 (287)
Q Consensus 180 ~~~lSgG--~~qrv~ia~al~~~a~~li~d~~~-----lllDe~~~~~l~~~~ 225 (287)
....+|+ +++++.+|++++.+++++++|+++ ..||+...+.+.+.+
T Consensus 148 ~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~ 200 (215)
T PTZ00132 148 ISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKEL 200 (215)
T ss_pred EeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHH
Confidence 3445555 777799999999999999999999 999985554444443
No 466
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.36 E-value=2.7e-06 Score=68.29 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=41.0
Q ss_pred hcCceEEEeCHHHHHHHHhhcccc--CCChHHHHHHHHHhcCcchHH-HHhhcC-CCccEEecc
Q 023126 225 FDEKWFIEVDLDTAMQRVLKRHIS--TGKPPDVAKWRIEYNDRPNAE-LIMKSK-KNADLVIKS 284 (287)
Q Consensus 225 ~~~~i~vtHd~~~~~~rv~gr~v~--~G~~~ev~~~~~~~~~~~~~~-~i~~~~-~~aD~i~~~ 284 (287)
.+..|++..+++....|+..|... .|.+.+-+.+.+.....+... |+.+++ ...|+++++
T Consensus 83 ~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 83 ADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccCCCCcEEEeC
Confidence 345689999999988888765443 255556556666666566544 777775 556899986
No 467
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.36 E-value=3.5e-07 Score=86.73 Aligned_cols=99 Identities=12% Similarity=0.049 Sum_probs=64.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC---CCC-----------CceeEEE-----eCCC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---VKP-----------PDVATVL-----PMDG 133 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~---~~~-----------~~~i~~v-----~qd~ 133 (287)
|.++.+.+|++++|+|+||+|||||+++|+++.+. .+.|.+.+.| ... ....+++ +|++
T Consensus 156 D~~l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~--~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q~p 233 (442)
T PRK06315 156 DGMLTVARGQRIGIFAGAGVGKSSLLGMIARNAEE--ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQSS 233 (442)
T ss_pred eccccccCCcEEEEECCCCCCcchHHHHhhccccc--CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCCCH
Confidence 67799999999999999999999999999998851 3444444322 110 1123444 7776
Q ss_pred CCCCcccCCccccHHHHHHhcCCC---CCchHHHHHHHHHHhcc
Q 023126 134 FHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 134 ~~~~~~~ltv~e~i~~~~~~~~~~---~~~~~~~~~~~l~~l~~ 174 (287)
....++.+ +...+++..+.++.. ...+..++.++++.++.
T Consensus 234 ~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 234 QLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred HHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 65544444 445555555554432 13456778888888874
No 468
>PRK13695 putative NTPase; Provisional
Probab=98.35 E-value=2.9e-07 Score=76.87 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=71.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
.++|.|+||||||||++.|++.+. + .|. . ..+++.++... ......+..... ... .
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~---~-~G~-~--------~~g~~~~~~~~--~~~~~~~~~~~~------~~~--~- 57 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK---E-EGY-K--------VGGFYTEEVRE--GGKRIGFKIIDL------DTG--E- 57 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH---H-CCC-e--------EEEEEcHHHHh--cCCccceEEEEc------CCC--C-
Confidence 578999999999999999999876 4 341 1 13455443111 101111110000 000 0
Q ss_pred HHHHHHHHHhc----cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcC--cccCCChhhHHHHHHhhcC---ceEEEe
Q 023126 163 LLLLNCLKNLR----NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE---KWFIEV 233 (287)
Q Consensus 163 ~~~~~~l~~l~----~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~--~~lllDe~~~~~l~~~~~~---~i~vtH 233 (287)
...+...+ .....+...+|++++-+..+.......++++++|+ +.-.+|+...+.+....+. .++++|
T Consensus 58 ---~~~l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h 134 (174)
T PRK13695 58 ---EGILARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLH 134 (174)
T ss_pred ---eEEccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEEC
Confidence 00111111 01122344688888888877666667889999998 4445555556666666543 468899
Q ss_pred CHHHH
Q 023126 234 DLDTA 238 (287)
Q Consensus 234 d~~~~ 238 (287)
+....
T Consensus 135 ~~~~~ 139 (174)
T PRK13695 135 RRSVH 139 (174)
T ss_pred chhhH
Confidence 86543
No 469
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.27 E-value=1.2e-06 Score=60.31 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=27.1
Q ss_pred ceecC-CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEA-RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~-GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+ |.++.|.|+|||||||++.+|.-.+-
T Consensus 17 ~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 17 IDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 56665 57999999999999999999998876
No 470
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.25 E-value=9.1e-07 Score=74.21 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|++++|+|+||||||||+++|++++.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 689999999999999999999999987
No 471
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.23 E-value=6.5e-07 Score=84.68 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=67.5
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
|..+.+.+|++++|+|+||+|||||+++|++..+ |+.|.+ .++.+.. ..+.+++.....
T Consensus 148 D~ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI-----------~~iGerg-------~ev~e~~~~~l~ 206 (432)
T PRK06793 148 DSMLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVI-----------SLVGERG-------REVKDFIRKELG 206 (432)
T ss_pred eccceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEE-----------EeCCCCc-------ccHHHHHHHHhh
Confidence 6679999999999999999999999999999988 776632 2333332 233333221111
Q ss_pred hcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhc-------cCccEEEEcCcccCCCh
Q 023126 153 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~-------~~a~~li~d~~~lllDe 215 (287)
..+..+. -.-....+.|.|++.|++.+.+.+ .+.-++++|..+-.+|.
T Consensus 207 ~~gl~~t---------------vvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A 261 (432)
T PRK06793 207 EEGMRKS---------------VVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA 261 (432)
T ss_pred hccccee---------------EEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH
Confidence 1111100 001334577888998888855544 44566677777766664
No 472
>PRK13949 shikimate kinase; Provisional
Probab=98.23 E-value=1.5e-05 Score=66.39 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+|++||||||+.+.|+..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999886
No 473
>PRK08118 topology modulation protein; Reviewed
Probab=98.22 E-value=3.2e-05 Score=64.26 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|+|++|||||||++.|+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999876
No 474
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.20 E-value=1.4e-06 Score=74.39 Aligned_cols=28 Identities=39% Similarity=0.601 Sum_probs=26.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999874
No 475
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.19 E-value=8.4e-06 Score=68.71 Aligned_cols=133 Identities=18% Similarity=0.240 Sum_probs=81.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
+|||.|-+-||||||++.+..++++ ..+++||+|+.+.++..+..| ....+....+-+.
T Consensus 6 ivgiSG~TnsGKTTLak~l~~~f~~------------------~~lIhqDDFyKp~~Ei~v~~~---n~~~wd~~esLdm 64 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHRFFPG------------------CSLIHQDDFYKPENEIEVDYN---NIDNWDLLESLDM 64 (225)
T ss_pred EEEeecccCCCHhHHHHHHHHHccC------------------CeeeccccccCchhhhhcccC---CcchhcchhhhhH
Confidence 7899999999999999999998862 458999999888766655554 2234444445555
Q ss_pred HHHHHHHH-HhccCCCCCCC---CCCcc----cCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeC
Q 023126 163 LLLLNCLK-NLRNQGSVYAP---SFDHG----VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 234 (287)
Q Consensus 163 ~~~~~~l~-~l~~~~~~~~~---~lSgG----~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd 234 (287)
+.+.+.+. .+....+.+.. -.|-- ..|.-.+ -+.+..+++.|+-.+.-- +.+.+.++..|+++-+
T Consensus 65 ~~fl~~ia~~l~~~~~~~~ar~~~v~~~~~~~~~~~~q~---~~~~~~iviidGfmiy~y----~p~~~~~d~~im~~~~ 137 (225)
T KOG3308|consen 65 EKFLEKIATWLDSRHNAPEAREHLVSYANFEHYAQQFQI---KAYKNHIVIIDGFMIYNY----KPQVDLFDRIIMLTLD 137 (225)
T ss_pred HHHHHHHHHHhcCccccchHhhhhhhhhHHHHHhhhcCc---ccccCcEEEEecceEEec----chhhhhhhhheeeecc
Confidence 55544332 22211111100 11110 0000011 122367788888766543 4566688888999999
Q ss_pred HHHHHHHHh
Q 023126 235 LDTAMQRVL 243 (287)
Q Consensus 235 ~~~~~~rv~ 243 (287)
-+.+.+|.-
T Consensus 138 y~~~krRr~ 146 (225)
T KOG3308|consen 138 YETCKRRRE 146 (225)
T ss_pred HHHHHHhhc
Confidence 999888554
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.18 E-value=1.2e-06 Score=74.08 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=24.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|++++|+||||||||||+++|++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999999999875
No 477
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.18 E-value=3.3e-05 Score=64.47 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...+.|+|++||||||+++.|++.+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45689999999999999999999875
No 478
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.16 E-value=8.9e-06 Score=68.09 Aligned_cols=141 Identities=13% Similarity=0.016 Sum_probs=72.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC----
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---- 157 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~---- 157 (287)
-|+.|+|.||+|||||+..|+-... ..+..|.-.+.+.. . .++. ...+++...... ..+
T Consensus 38 pIT~i~GENGsGKSTLLEaiA~~~~-~n~aGg~~n~~~~~------~-~s~s--------~l~~~~k~~~~~-k~~~g~F 100 (233)
T COG3910 38 PITFITGENGSGKSTLLEAIAAGMG-FNAAGGGKNFKGEL------D-ASHS--------ALVDYAKLHKRK-KPPIGFF 100 (233)
T ss_pred ceEEEEcCCCccHHHHHHHHHhhcc-ccccCCCcCcCccc------c-cccc--------hHHHhHHHhhcC-CCCcceE
Confidence 3778999999999999999987664 11333322111100 0 0000 000111111000 000
Q ss_pred -CCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC--
Q 023126 158 -WTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE-- 227 (287)
Q Consensus 158 -~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~-- 227 (287)
.++..-.+...++.+.. .........|.|+-=..-+.... ...-+.++|+|=..|.+ +++..++++.+.
T Consensus 101 lRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGa 179 (233)
T COG3910 101 LRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGA 179 (233)
T ss_pred EehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCC
Confidence 11111122233443331 22345668899984332222222 23567777877777776 566777777664
Q ss_pred -ceEEEeCHHHHHH
Q 023126 228 -KWFIEVDLDTAMQ 240 (287)
Q Consensus 228 -~i~vtHd~~~~~~ 240 (287)
.|++||.+-....
T Consensus 180 Q~IiATHSPiLlAi 193 (233)
T COG3910 180 QIIIATHSPILLAI 193 (233)
T ss_pred eEEEEecChhheeC
Confidence 4799999876543
No 479
>PRK01889 GTPase RsgA; Reviewed
Probab=98.16 E-value=2.8e-06 Score=79.07 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=45.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-----CCceeEEEeCCCCCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHL 136 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~-----~~~~i~~v~qd~~~~ 136 (287)
.+.+|++++|+|+||+|||||++.|.|... +..|++..++.. ....+.+++++.+.+
T Consensus 191 ~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~ 252 (356)
T PRK01889 191 WLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVREDDSKGRHTTTHRELHPLPSGGLLI 252 (356)
T ss_pred HhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEEECCCCCcchhhhccEEEecCCCeec
Confidence 367899999999999999999999999999 999998765432 123467777775544
No 480
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.10 E-value=3.8e-06 Score=81.17 Aligned_cols=59 Identities=19% Similarity=0.166 Sum_probs=50.1
Q ss_pred CcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 55 TRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
.++...+|...+. +.+ +.+..|+.++|+|+||||||||++.|.|+++ |.+|++.+....
T Consensus 188 ~d~~~v~Gq~~~~-----~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~e~le~~~ 247 (506)
T PRK09862 188 HDLSDVIGQEQGK-----RGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNEEALESAA 247 (506)
T ss_pred cCeEEEECcHHHH-----hhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCcEEEecch
Confidence 4677777776666 777 8899999999999999999999999999999 999987665543
No 481
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.09 E-value=8.8e-06 Score=69.44 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=46.7
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.+++.|-++++= ......++.+++|+.+.+...+|+..| +|-..+.+..++.. .. .+.+...+||+|
T Consensus 104 ~~vi~e~pLL~E-----~~~~~~~D~vi~V~a~~e~r~~RL~~R---~g~s~e~a~~ri~~-Q~----~~~~k~~~aD~v 170 (196)
T PRK14732 104 KLVIWEVPLLFE-----TDAYTLCDATVTVDSDPEESILRTISR---DGMKKEDVLARIAS-QL----PITEKLKRADYI 170 (196)
T ss_pred CcEEEEeeeeeE-----cCchhhCCEEEEEECCHHHHHHHHHHc---CCCCHHHHHHHHHH-cC----CHHHHHHhCCEE
Confidence 455666665532 123356788899999999998888866 35555655555443 22 244567889999
Q ss_pred eccCC
Q 023126 282 IKSID 286 (287)
Q Consensus 282 ~~~~~ 286 (287)
+.|..
T Consensus 171 I~N~~ 175 (196)
T PRK14732 171 VRNDG 175 (196)
T ss_pred EECCC
Confidence 98753
No 482
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.09 E-value=2e-05 Score=65.94 Aligned_cols=123 Identities=13% Similarity=0.084 Sum_probs=67.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHH
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL 163 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~ 163 (287)
+.|.||+|+|||||+..++-..- ..| ..+.|+..+ .+..+.+.. ...++.+ .+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~----~~g----------~~v~~~s~e--------~~~~~~~~~-~~~~g~~----~~ 54 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL----ARG----------EPGLYVTLE--------ESPEELIEN-AESLGWD----LE 54 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH----HCC----------CcEEEEECC--------CCHHHHHHH-HHHcCCC----hH
Confidence 67899999999999876544321 111 225566543 122222222 2222321 11
Q ss_pred HHHHHHHHhc--cCCCCCCCCCCcccCC------chhhhhhhccCccEEEEcCcccCCC---h----hhHHHHHHhhc--
Q 023126 164 LLLNCLKNLR--NQGSVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---G----GVWKDVSSMFD-- 226 (287)
Q Consensus 164 ~~~~~l~~l~--~~~~~~~~~lSgG~~q------rv~ia~al~~~a~~li~d~~~lllD---e----~~~~~l~~~~~-- 226 (287)
. +...+ ...+..+..+|+|++| ......+...+++++++|++..++| + .+.+.+..+..
T Consensus 55 ~----l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g 130 (187)
T cd01124 55 R----LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFG 130 (187)
T ss_pred H----HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCC
Confidence 1 11222 2234556688999988 4444444566899999999999988 3 22233333322
Q ss_pred -CceEEEeCHHH
Q 023126 227 -EKWFIEVDLDT 237 (287)
Q Consensus 227 -~~i~vtHd~~~ 237 (287)
..++++|+...
T Consensus 131 ~tvi~v~~~~~~ 142 (187)
T cd01124 131 VTTLLTSEQSGL 142 (187)
T ss_pred CEEEEEeccccC
Confidence 23577887664
No 483
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.09 E-value=3.8e-05 Score=64.85 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=36.8
Q ss_pred HHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEEeccC
Q 023126 221 VSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 285 (287)
Q Consensus 221 l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 285 (287)
+...++..++++.+.+....|+..|. |.+.+.+.+++.... + ....+..||++++|.
T Consensus 120 ~~~~~D~vv~V~~~~~~~~~Rl~~R~---~~s~~~~~~r~~~q~-~----~~~~~~~ad~vI~N~ 176 (188)
T TIGR00152 120 LRSLCDRVIVVDVSPQLQLERLMQRD---NLTEEEVQKRLASQM-D----IEERLARADDVIDNS 176 (188)
T ss_pred cHHhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhcC-C----HHHHHHhCCEEEECC
Confidence 45566677888888888888777554 555565555554321 1 123467799999764
No 484
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.09 E-value=8.7e-06 Score=81.80 Aligned_cols=81 Identities=25% Similarity=0.365 Sum_probs=54.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+.+|++++++||||+||||++..|++.+. ...| .+.++++..|.+- ....+.+.......+
T Consensus 180 ~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~~a~~~g 242 (767)
T PRK14723 180 ALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRIYGRILG 242 (767)
T ss_pred cccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHHHHHhCC
Confidence 4466799999999999999999999999885 4433 1347788877541 334566666666665
Q ss_pred CCC--CchHHHHHHHHHHhc
Q 023126 156 APW--TFNPLLLLNCLKNLR 173 (287)
Q Consensus 156 ~~~--~~~~~~~~~~l~~l~ 173 (287)
.+. ..+.+.+.+.++.+.
T Consensus 243 vpv~~~~~~~~l~~al~~~~ 262 (767)
T PRK14723 243 VPVHAVKDAADLRFALAALG 262 (767)
T ss_pred CCccccCCHHHHHHHHHHhc
Confidence 542 234445566666554
No 485
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.08 E-value=1e-05 Score=68.98 Aligned_cols=71 Identities=25% Similarity=0.456 Sum_probs=46.5
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.++++|-++++= ..+...++.+++|+.+.+...+|++.|. |-..+.+.++... ..+ +.+....||+|
T Consensus 108 ~~vv~e~pll~E-----~~~~~~~D~ii~V~a~~e~r~~Rl~~R~---g~s~e~~~~ri~~-Q~~----~~~k~~~aD~v 174 (195)
T PRK14730 108 PIVVLVIPLLFE-----AKLTDLCSEIWVVDCSPEQQLQRLIKRD---GLTEEEAEARINA-QWP----LEEKVKLADVV 174 (195)
T ss_pred CEEEEEeHHhcC-----cchHhCCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-CCC----HHHHHhhCCEE
Confidence 466677676642 1355577888999999999998888553 4444544444432 112 34457789999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 175 I~N~ 178 (195)
T PRK14730 175 LDNS 178 (195)
T ss_pred EECC
Confidence 9875
No 486
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=2.6e-06 Score=81.03 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=39.5
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 118 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~ 118 (287)
|+++.+.+|++++|+|+||+|||||+++|+++.. |+.|.+...
T Consensus 150 d~l~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI~~~ 192 (438)
T PRK07721 150 DSLLTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVIALI 192 (438)
T ss_pred heeeeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEE
Confidence 7779999999999999999999999999999998 999887653
No 487
>PRK05922 type III secretion system ATPase; Validated
Probab=98.05 E-value=1.3e-06 Score=82.73 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=37.5
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~ 116 (287)
|..+.+.+|+.++|+|+||+|||||+++|++..+ ++.|.+.
T Consensus 149 D~ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi~ 189 (434)
T PRK05922 149 DAFLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVIA 189 (434)
T ss_pred cceEEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEEE
Confidence 6678999999999999999999999999999988 8888763
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.04 E-value=3.7e-06 Score=77.03 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=31.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
.+|++++++|||||||||++..|++.+. +..++|.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V~L 147 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKVLL 147 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeEEE
Confidence 4689999999999999999999999998 77666554
No 489
>PRK07261 topology modulation protein; Provisional
Probab=98.04 E-value=2.4e-05 Score=65.20 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|++|||||||++.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998765
No 490
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.02 E-value=2.5e-06 Score=80.80 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred ccccCccccccc-ccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 51 VFGKTRSLVQNK-TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 51 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
.++.+.++..+. +..++ |.++.+.+|++++|+|+||+|||||+++|++... ++.|.+...|
T Consensus 129 ~~~r~~v~~~l~tGi~aI-----D~ll~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi~~iG 190 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAI-----DSVATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVLVLIG 190 (433)
T ss_pred ceeccCHhheeCCCceee-----eeeeecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEEEEEC
Confidence 344445555553 33444 7779999999999999999999999999999998 9888665444
No 491
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.02 E-value=3.2e-06 Score=77.36 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=37.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
|.++.+.+|++++|+|+||+|||||+++|+|... |+.|.+..
T Consensus 61 D~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~vi~~ 102 (326)
T cd01136 61 DGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNVIAL 102 (326)
T ss_pred eeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEEEE
Confidence 7779999999999999999999999999999998 88776543
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.01 E-value=5.8e-06 Score=69.09 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|++++|+||||||||||++.|++.+.
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999875
No 493
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.00 E-value=3.3e-05 Score=66.49 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=45.0
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.+++.|.++++ . ......++.+++++.+.+...+|+..|. +...+.+.++... ..+..+.+ ..||++
T Consensus 116 ~vvv~e~pLL~-e----~~~~~~~d~ii~V~a~~e~~~~Rl~~R~---~~s~e~~~~Ri~~-q~~~~~~~----~~ad~v 182 (208)
T PRK14731 116 RILVKEAAILF-E----SGGDAGLDFIVVVAADTELRLERAVQRG---MGSREEIRRRIAA-QWPQEKLI----ERADYV 182 (208)
T ss_pred CEEEEEeeeee-e----cCchhcCCeEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-cCChHHHH----HhCCEE
Confidence 56777777443 2 1233456778899999999988888652 3355656665543 23333343 368999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 183 I~N~ 186 (208)
T PRK14731 183 IYNN 186 (208)
T ss_pred EECC
Confidence 8775
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.98 E-value=4.7e-06 Score=69.64 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=24.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|++++|+||||||||||++.|++.++
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCc
Confidence 78999999999999999999999765
No 495
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.97 E-value=4.8e-06 Score=71.01 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=26.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.+|.+++|+|+||||||||++.|.+.+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999885
No 496
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.95 E-value=7.8e-06 Score=81.34 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=63.5
Q ss_pred CCCCCCCCCCcccCCchhhhhhhccC--ccEEEEcCcccCCCh----hh---HHHHHHhhcCceEEEeCHHHHHH--HHh
Q 023126 175 QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG----GV---WKDVSSMFDEKWFIEVDLDTAMQ--RVL 243 (287)
Q Consensus 175 ~~~~~~~~lSgG~~qrv~ia~al~~~--a~~li~d~~~lllDe----~~---~~~l~~~~~~~i~vtHd~~~~~~--rv~ 243 (287)
..++...+|||||.||+-+|..+-+. -=+.++|||-+.|-+ .+ ++.|+++-.+.|+|.||.+..+. +++
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 45788899999999999998776332 234578888888866 34 44444444556899999999888 665
Q ss_pred ----------hccccCCChHHHHHH
Q 023126 244 ----------KRHISTGKPPDVAKW 258 (287)
Q Consensus 244 ----------gr~v~~G~~~ev~~~ 258 (287)
|.+++.|++++++++
T Consensus 554 DiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 554 DIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred eeCCCCCcCCCEEEEccCHHHHHhC
Confidence 689999999998763
No 497
>PRK08149 ATP synthase SpaL; Validated
Probab=97.95 E-value=5.6e-06 Score=78.31 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=38.6
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC---cccccCCC
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQV 120 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~---G~i~~~~~ 120 (287)
++++.+.+|++++|+|+||+|||||+++|++... ++. |.|-..+.
T Consensus 143 d~ll~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~---~dv~v~g~Ig~rg~ 190 (428)
T PRK08149 143 DGLLTCGVGQRMGIFASAGCGKTSLMNMLIEHSE---ADVFVIGLIGERGR 190 (428)
T ss_pred eeeeeEecCCEEEEECCCCCChhHHHHHHhcCCC---CCeEEEEEEeeCCc
Confidence 7779999999999999999999999999999887 776 65555443
No 498
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.94 E-value=1.9e-05 Score=66.28 Aligned_cols=71 Identities=27% Similarity=0.421 Sum_probs=46.3
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.+++.|.++++-. .+...++.+++|+.+.+...+|++.|. |...+.+...+..- .+. .+....||+|
T Consensus 104 ~~vive~plL~e~-----~~~~~~D~vv~V~a~~~~ri~Rl~~Rd---~~s~~~~~~r~~~Q-~~~----~~~~~~aD~v 170 (179)
T cd02022 104 KVVVLDIPLLFET-----GLEKLVDRVIVVDAPPEIQIERLMKRD---GLSEEEAEARIASQ-MPL----EEKRARADFV 170 (179)
T ss_pred CEEEEEehHhhcC-----CcHHhCCeEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHhc-CCH----HHHHHhCCEE
Confidence 4677776666432 345677888999999999988887553 44445444444331 222 2356789999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 171 I~N~ 174 (179)
T cd02022 171 IDNS 174 (179)
T ss_pred EECc
Confidence 9875
No 499
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.91 E-value=2.9e-05 Score=66.09 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=45.3
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.++++|.++++-. .+.+.++.+++++.+.+...+|+..| +|-..+.+..++.. ..+. ......||++
T Consensus 107 ~~vv~e~pll~e~-----~~~~~~D~vi~V~a~~e~~~~Rl~~R---~~~s~e~~~~ri~~-Q~~~----~~~~~~ad~v 173 (194)
T PRK00081 107 PYVVLDIPLLFEN-----GLEKLVDRVLVVDAPPETQLERLMAR---DGLSEEEAEAIIAS-QMPR----EEKLARADDV 173 (194)
T ss_pred CEEEEEehHhhcC-----CchhhCCeEEEEECCHHHHHHHHHHc---CCCCHHHHHHHHHH-hCCH----HHHHHhCCEE
Confidence 5677787776532 34456788899999999988888755 34454544444432 1222 2235678999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
++|.
T Consensus 174 I~N~ 177 (194)
T PRK00081 174 IDNN 177 (194)
T ss_pred EECC
Confidence 9774
No 500
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.91 E-value=8.9e-06 Score=78.70 Aligned_cols=52 Identities=21% Similarity=0.443 Sum_probs=38.2
Q ss_pred ccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 57 SLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 57 ~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
+.+.+|+...+ |++ +.. +|.+++|.|||||||||+++.|+..+...+.++|.
T Consensus 265 ~A~~~g~~RLI-----DN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~ 317 (512)
T PRK13477 265 IAVRCGSTRLI-----DNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGA 317 (512)
T ss_pred EEEEeCCeEEE-----eeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCc
Confidence 34455555555 888 555 88999999999999999999999877522234443
Done!