Query 023126
Match_columns 287
No_of_seqs 334 out of 3195
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 16:48:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023126.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023126hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 5.4E-40 1.8E-44 302.0 4.8 198 50-257 3-228 (359)
2 3tui_C Methionine import ATP-b 100.0 4E-39 1.4E-43 296.4 8.8 201 47-257 20-253 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 2.4E-39 8.2E-44 299.6 6.4 197 51-257 3-223 (381)
4 1z47_A CYSA, putative ABC-tran 100.0 1.3E-38 4.4E-43 292.8 6.7 201 47-257 10-235 (355)
5 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-39 1.1E-43 287.9 2.5 201 49-258 5-234 (275)
6 2it1_A 362AA long hypothetical 100.0 3.8E-38 1.3E-42 290.5 7.5 197 51-257 3-223 (362)
7 2olj_A Amino acid ABC transpor 100.0 3.4E-38 1.2E-42 279.6 5.9 201 47-257 20-248 (263)
8 1b0u_A Histidine permease; ABC 100.0 3.4E-38 1.2E-42 279.7 5.4 199 49-257 4-242 (262)
9 1v43_A Sugar-binding transport 100.0 5.2E-38 1.8E-42 290.6 6.2 197 51-257 11-231 (372)
10 2yyz_A Sugar ABC transporter, 100.0 3.1E-38 1E-42 290.9 4.2 197 51-257 3-223 (359)
11 1g29_1 MALK, maltose transport 100.0 5.9E-38 2E-42 290.5 6.0 197 51-257 3-229 (372)
12 4g1u_C Hemin import ATP-bindin 100.0 1.6E-37 5.5E-42 275.8 6.7 197 49-257 9-237 (266)
13 1oxx_K GLCV, glucose, ABC tran 100.0 4.4E-38 1.5E-42 289.6 3.1 197 51-257 3-230 (353)
14 2pcj_A ABC transporter, lipopr 100.0 8.7E-38 3E-42 271.0 3.9 180 49-238 2-203 (224)
15 3d31_A Sulfate/molybdate ABC t 100.0 1.5E-37 5.2E-42 285.2 5.8 192 51-256 1-216 (348)
16 1vpl_A ABC transporter, ATP-bi 100.0 1.2E-37 4E-42 275.2 4.6 200 48-257 12-235 (256)
17 1ji0_A ABC transporter; ATP bi 100.0 3E-37 1E-41 270.3 6.9 199 47-256 2-227 (240)
18 3tif_A Uncharacterized ABC tra 100.0 2.3E-37 7.9E-42 270.2 3.6 195 51-255 1-232 (235)
19 1g6h_A High-affinity branched- 100.0 2E-37 6.7E-42 274.1 1.0 196 49-254 5-239 (257)
20 2ihy_A ABC transporter, ATP-bi 100.0 3.4E-37 1.2E-41 275.5 0.7 202 47-256 17-251 (279)
21 2yz2_A Putative ABC transporte 100.0 5.7E-36 1.9E-40 266.0 3.2 198 51-258 2-228 (266)
22 2onk_A Molybdate/tungstate ABC 100.0 4.8E-36 1.6E-40 262.6 2.6 192 51-257 1-216 (240)
23 2nq2_C Hypothetical ABC transp 100.0 1.6E-35 5.4E-40 261.2 5.9 191 50-256 3-216 (253)
24 1sgw_A Putative ABC transporte 100.0 8.2E-35 2.8E-39 250.4 6.4 178 50-240 9-198 (214)
25 2ixe_A Antigen peptide transpo 100.0 3.9E-35 1.3E-39 261.2 0.8 197 49-258 14-246 (271)
26 1mv5_A LMRA, multidrug resista 100.0 7.2E-34 2.5E-38 249.2 7.3 191 51-257 1-226 (243)
27 2zu0_C Probable ATP-dependent 100.0 2.9E-34 1E-38 255.0 3.7 198 49-256 18-253 (267)
28 2d2e_A SUFC protein; ABC-ATPas 100.0 2.9E-34 9.9E-39 252.8 3.6 193 51-253 3-229 (250)
29 3nh6_A ATP-binding cassette SU 100.0 2.2E-34 7.7E-39 260.0 0.9 192 50-258 52-278 (306)
30 2ff7_A Alpha-hemolysin translo 100.0 5.1E-34 1.8E-38 250.7 3.0 188 52-256 8-231 (247)
31 2pjz_A Hypothetical protein ST 100.0 9.1E-34 3.1E-38 251.2 4.0 189 51-257 1-215 (263)
32 2qi9_C Vitamin B12 import ATP- 100.0 4.9E-34 1.7E-38 251.0 1.7 187 50-256 3-221 (249)
33 2cbz_A Multidrug resistance-as 100.0 9.1E-34 3.1E-38 247.7 -0.1 187 51-257 3-217 (237)
34 2pze_A Cystic fibrosis transme 100.0 2.3E-32 7.8E-37 237.7 7.6 186 49-257 4-218 (229)
35 3gd7_A Fusion complex of cysti 100.0 5.3E-33 1.8E-37 258.6 3.0 190 49-257 17-242 (390)
36 2ghi_A Transport protein; mult 100.0 3E-33 1E-37 247.6 0.4 191 49-257 15-242 (260)
37 3b5x_A Lipid A export ATP-bind 100.0 7.5E-31 2.6E-35 256.6 8.1 192 50-257 340-567 (582)
38 3aez_A Pantothenate kinase; tr 100.0 6.1E-31 2.1E-35 238.5 3.9 221 49-286 41-300 (312)
39 3b60_A Lipid A export ATP-bind 100.0 7.8E-31 2.7E-35 256.5 2.6 193 50-258 340-568 (582)
40 2bbs_A Cystic fibrosis transme 100.0 3.2E-30 1.1E-34 231.4 6.2 183 49-257 38-247 (290)
41 3qf4_A ABC transporter, ATP-bi 100.0 2.7E-30 9.3E-35 252.8 5.8 192 50-258 340-567 (587)
42 2yl4_A ATP-binding cassette SU 100.0 1.4E-30 4.7E-35 255.3 3.7 192 52-257 342-570 (595)
43 3qf4_B Uncharacterized ABC tra 100.0 1.4E-30 4.6E-35 255.5 3.1 192 50-258 353-579 (598)
44 4a82_A Cystic fibrosis transme 100.0 1.5E-30 5E-35 254.3 1.7 192 50-258 338-565 (578)
45 3bk7_A ABC transporter ATP-bin 100.0 3.6E-29 1.2E-33 245.0 9.6 190 48-258 354-564 (607)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 3.6E-29 1.2E-33 242.3 8.2 190 48-258 284-494 (538)
47 3ozx_A RNAse L inhibitor; ATP 99.9 3E-28 1E-32 235.5 8.8 175 48-240 266-451 (538)
48 4f4c_A Multidrug resistance pr 99.9 7.3E-29 2.5E-33 261.5 1.5 194 50-258 1075-1305(1321)
49 3g5u_A MCG1178, multidrug resi 99.9 3E-28 1E-32 256.3 1.4 193 50-257 1029-1258(1284)
50 3j16_B RLI1P; ribosome recycli 99.9 1.2E-26 4.2E-31 226.9 11.7 185 55-258 350-560 (608)
51 3g5u_A MCG1178, multidrug resi 99.9 2.6E-27 8.8E-32 249.2 6.9 191 50-257 386-613 (1284)
52 4f4c_A Multidrug resistance pr 99.9 2.1E-27 7.2E-32 250.4 3.4 191 50-257 414-641 (1321)
53 2iw3_A Elongation factor 3A; a 99.9 3.6E-27 1.2E-31 239.3 2.7 192 48-250 668-980 (986)
54 3bk7_A ABC transporter ATP-bin 99.9 4.3E-26 1.5E-30 223.2 7.7 169 55-240 95-293 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 9.1E-26 3.1E-30 218.5 8.5 172 52-240 21-223 (538)
56 2jeo_A Uridine-cytidine kinase 99.9 7.3E-25 2.5E-29 191.7 12.8 195 73-284 16-214 (245)
57 3j16_B RLI1P; ribosome recycli 99.9 8.7E-25 3E-29 213.8 9.3 174 56-240 82-286 (608)
58 3c8u_A Fructokinase; YP_612366 99.9 1.1E-24 3.8E-29 186.0 6.2 182 78-284 19-207 (208)
59 2iw3_A Elongation factor 3A; a 99.9 1.4E-24 4.8E-29 220.4 7.2 181 52-257 436-635 (986)
60 3ux8_A Excinuclease ABC, A sub 99.9 2.7E-24 9.1E-29 213.5 7.3 182 73-257 35-298 (670)
61 3ozx_A RNAse L inhibitor; ATP 99.9 9.1E-24 3.1E-28 204.2 9.5 167 57-240 5-202 (538)
62 2npi_A Protein CLP1; CLP1-PCF1 99.9 4.8E-26 1.7E-30 216.2 -10.3 177 70-256 126-337 (460)
63 3asz_A Uridine kinase; cytidin 99.9 6.4E-22 2.2E-26 168.5 11.5 178 78-286 3-188 (211)
64 3b85_A Phosphate starvation-in 99.9 4.2E-23 1.4E-27 176.6 1.3 144 60-240 9-163 (208)
65 3ux8_A Excinuclease ABC, A sub 99.8 2.1E-22 7.3E-27 199.8 4.8 95 162-256 520-639 (670)
66 3tqc_A Pantothenate kinase; bi 99.8 4.9E-21 1.7E-25 173.7 4.3 187 83-285 94-308 (321)
67 3pih_A Uvrabc system protein A 99.8 3.7E-20 1.3E-24 187.6 10.3 96 162-257 782-902 (916)
68 2vf7_A UVRA2, excinuclease ABC 99.8 1.6E-20 5.5E-25 188.9 5.2 96 162-257 707-827 (842)
69 2ga8_A Hypothetical 39.9 kDa p 99.8 4.5E-20 1.5E-24 168.5 6.5 163 125-287 155-353 (359)
70 1sq5_A Pantothenate kinase; P- 99.8 2.9E-20 9.9E-25 168.0 5.2 214 49-285 35-296 (308)
71 2r6f_A Excinuclease ABC subuni 99.8 6.2E-20 2.1E-24 185.4 7.1 95 163-257 823-942 (972)
72 2ygr_A Uvrabc system protein A 99.8 1E-19 3.5E-24 184.4 8.4 94 164-257 842-960 (993)
73 1odf_A YGR205W, hypothetical 3 99.8 1.7E-19 5.9E-24 161.6 7.9 193 78-285 28-276 (290)
74 4gp7_A Metallophosphoesterase; 99.8 1.4E-19 4.8E-24 149.7 5.3 137 76-240 4-164 (171)
75 3sop_A Neuronal-specific septi 99.8 7.2E-20 2.5E-24 162.5 3.6 142 83-237 4-152 (270)
76 2v9p_A Replication protein E1; 99.8 8.3E-21 2.8E-25 170.9 -5.0 156 51-255 101-264 (305)
77 4aby_A DNA repair protein RECN 99.7 3.9E-19 1.3E-23 166.3 -0.7 57 183-239 296-360 (415)
78 1tq4_A IIGP1, interferon-induc 99.7 1.1E-19 3.7E-24 170.0 -5.7 135 73-224 40-212 (413)
79 1ye8_A Protein THEP1, hypothet 99.7 3.9E-18 1.3E-22 142.2 2.9 131 83-240 2-148 (178)
80 1znw_A Guanylate kinase, GMP k 99.7 4.7E-19 1.6E-23 150.8 -5.1 67 76-147 15-85 (207)
81 2dpy_A FLII, flagellum-specifi 99.7 3.4E-19 1.2E-23 168.2 -7.8 174 50-254 130-341 (438)
82 1z6g_A Guanylate kinase; struc 99.7 1.1E-18 3.7E-23 150.0 -4.0 151 73-240 14-199 (218)
83 3b9q_A Chloroplast SRP recepto 99.7 6.1E-18 2.1E-22 152.4 -0.5 143 74-234 92-256 (302)
84 2pt7_A CAG-ALFA; ATPase, prote 99.6 3E-16 1E-20 143.0 8.8 136 73-261 162-307 (330)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 2.5E-16 8.6E-21 145.4 7.8 62 177-238 274-348 (365)
86 2og2_A Putative signal recogni 99.6 3.9E-17 1.3E-21 150.2 -0.3 141 76-234 152-313 (359)
87 2obl_A ESCN; ATPase, hydrolase 99.6 1E-16 3.6E-21 146.9 -1.8 63 50-120 44-107 (347)
88 1e69_A Chromosome segregation 99.6 6.8E-16 2.3E-20 140.1 3.5 62 177-238 214-285 (322)
89 1htw_A HI0065; nucleotide-bind 99.5 7.2E-15 2.5E-19 120.1 3.9 86 52-149 8-97 (158)
90 1s96_A Guanylate kinase, GMP k 99.5 6.5E-15 2.2E-19 126.6 3.2 136 76-256 11-159 (219)
91 2qnr_A Septin-2, protein NEDD5 99.5 2.9E-15 9.8E-20 134.8 0.3 155 55-236 2-168 (301)
92 1rj9_A FTSY, signal recognitio 99.5 4.4E-14 1.5E-18 127.2 5.6 140 80-237 101-260 (304)
93 1tf7_A KAIC; homohexamer, hexa 99.4 9.4E-14 3.2E-18 134.0 8.0 127 77-235 277-417 (525)
94 2o8b_B DNA mismatch repair pro 99.4 8E-15 2.7E-19 150.8 0.5 148 48-240 747-917 (1022)
95 2eyu_A Twitching motility prot 99.4 6.6E-14 2.2E-18 123.5 6.0 115 73-238 18-136 (261)
96 1rz3_A Hypothetical protein rb 99.4 3.7E-14 1.3E-18 119.9 3.0 179 77-285 18-200 (201)
97 1p9r_A General secretion pathw 99.4 5.5E-15 1.9E-19 138.6 -3.9 143 51-206 143-315 (418)
98 1tf7_A KAIC; homohexamer, hexa 99.4 6.5E-16 2.2E-20 149.1 -10.7 77 49-133 10-97 (525)
99 1ewq_A DNA mismatch repair pro 99.4 1.1E-13 3.8E-18 138.4 3.4 121 73-238 570-701 (765)
100 3szr_A Interferon-induced GTP- 99.4 9.9E-14 3.4E-18 136.0 2.3 155 51-238 10-199 (608)
101 2i3b_A HCR-ntpase, human cance 99.4 6.8E-14 2.3E-18 117.5 0.9 130 81-235 1-149 (189)
102 2rcn_A Probable GTPase ENGC; Y 99.4 5E-14 1.7E-18 129.2 -0.4 111 78-198 212-329 (358)
103 2qag_C Septin-7; cell cycle, c 99.3 5.6E-13 1.9E-17 124.9 5.7 161 48-237 8-179 (418)
104 1nlf_A Regulatory protein REPA 99.3 7.2E-12 2.4E-16 111.0 11.2 143 77-238 26-184 (279)
105 2ehv_A Hypothetical protein PH 99.3 3.2E-13 1.1E-17 116.8 2.2 39 77-118 26-66 (251)
106 3qkt_A DNA double-strand break 99.3 2.1E-12 7.3E-17 117.8 7.5 61 177-237 243-316 (339)
107 4a74_A DNA repair and recombin 99.3 5.4E-14 1.8E-18 120.2 -3.7 30 77-106 21-50 (231)
108 3thx_B DNA mismatch repair pro 99.3 1E-13 3.4E-18 140.9 -2.6 125 73-239 664-800 (918)
109 1cr0_A DNA primase/helicase; R 99.3 3.7E-12 1.3E-16 113.6 7.2 148 73-235 26-197 (296)
110 2yv5_A YJEQ protein; hydrolase 99.3 1.1E-12 3.7E-17 118.0 3.4 114 76-194 160-299 (302)
111 2f1r_A Molybdopterin-guanine d 99.3 2.6E-13 8.7E-18 112.2 -1.6 101 82-203 3-124 (171)
112 3jvv_A Twitching mobility prot 99.2 9.8E-12 3.4E-16 114.2 7.1 110 77-240 119-236 (356)
113 1zp6_A Hypothetical protein AT 99.2 2.7E-13 9.4E-18 112.8 -3.3 130 76-223 4-142 (191)
114 2bdt_A BH3686; alpha-beta prot 99.2 4.4E-13 1.5E-17 111.6 -2.7 157 81-256 2-183 (189)
115 3e70_C DPA, signal recognition 99.2 1.9E-12 6.6E-17 117.6 0.7 69 78-151 126-208 (328)
116 1lw7_A Transcriptional regulat 99.2 1.3E-12 4.4E-17 120.4 -1.6 42 73-117 159-207 (365)
117 1pui_A ENGB, probable GTP-bind 99.2 6.6E-12 2.3E-16 105.6 2.8 156 51-216 3-184 (210)
118 1uj2_A Uridine-cytidine kinase 99.2 3.5E-11 1.2E-15 105.0 7.2 184 81-282 22-210 (252)
119 3tr0_A Guanylate kinase, GMP k 99.2 9.1E-12 3.1E-16 104.6 2.7 31 76-106 2-32 (205)
120 2qt1_A Nicotinamide riboside k 99.2 3.2E-11 1.1E-15 101.8 6.1 136 76-246 16-151 (207)
121 3thx_A DNA mismatch repair pro 99.1 2.3E-11 7.8E-16 123.9 5.3 125 73-239 653-789 (934)
122 2qag_B Septin-6, protein NEDD5 99.1 1.5E-11 5.2E-16 115.0 3.7 159 51-223 16-203 (427)
123 2gza_A Type IV secretion syste 99.1 6.4E-11 2.2E-15 109.0 7.3 45 73-120 166-211 (361)
124 2bbw_A Adenylate kinase 4, AK4 99.1 3.2E-13 1.1E-17 117.5 -8.1 123 80-216 26-184 (246)
125 2o5v_A DNA replication and rep 99.1 3.7E-12 1.3E-16 117.1 -1.6 77 178-255 260-354 (359)
126 1a7j_A Phosphoribulokinase; tr 99.1 3.1E-11 1.1E-15 107.8 4.3 189 80-286 4-216 (290)
127 2w0m_A SSO2452; RECA, SSPF, un 99.1 2.4E-10 8.3E-15 97.2 8.5 138 73-236 13-169 (235)
128 4e22_A Cytidylate kinase; P-lo 99.1 2.1E-11 7E-16 106.7 1.8 35 79-116 25-62 (252)
129 2yhs_A FTSY, cell division pro 99.1 4.7E-11 1.6E-15 113.4 4.4 75 73-152 284-373 (503)
130 2oap_1 GSPE-2, type II secreti 99.1 2.9E-12 9.9E-17 123.0 -4.1 45 73-120 251-296 (511)
131 1wb9_A DNA mismatch repair pro 99.1 3.7E-11 1.3E-15 120.8 3.2 126 73-239 599-734 (800)
132 1u0l_A Probable GTPase ENGC; p 99.1 5.4E-11 1.8E-15 106.8 3.4 92 76-174 164-280 (301)
133 1in4_A RUVB, holliday junction 99.1 7.2E-12 2.5E-16 114.0 -2.5 131 51-193 18-173 (334)
134 1nij_A Hypothetical protein YJ 99.0 1.2E-13 4E-18 125.2 -14.5 37 81-120 4-48 (318)
135 1pzn_A RAD51, DNA repair and r 99.0 5.5E-12 1.9E-16 115.6 -4.1 112 76-215 126-246 (349)
136 2ewv_A Twitching motility prot 99.0 2.9E-10 9.9E-15 105.0 7.1 38 77-117 132-170 (372)
137 3euj_A Chromosome partition pr 99.0 2.4E-10 8.3E-15 108.5 5.4 45 73-121 21-66 (483)
138 2qm8_A GTPase/ATPase; G protei 99.0 6.2E-11 2.1E-15 108.1 0.9 61 51-119 29-90 (337)
139 1t9h_A YLOQ, probable GTPase E 99.0 9E-12 3.1E-16 112.1 -4.7 113 73-189 165-302 (307)
140 3pih_A Uvrabc system protein A 98.9 3.2E-10 1.1E-14 115.2 3.9 93 165-257 444-560 (916)
141 2r6f_A Excinuclease ABC subuni 98.9 1.6E-10 5.5E-15 117.1 1.2 115 141-257 452-600 (972)
142 2x8a_A Nuclear valosin-contain 98.9 1.6E-11 5.4E-16 108.9 -5.6 41 73-120 37-78 (274)
143 2ygr_A Uvrabc system protein A 98.9 2.6E-10 9E-15 115.9 0.7 91 167-257 503-617 (993)
144 3vaa_A Shikimate kinase, SK; s 98.9 2.2E-08 7.5E-13 83.9 11.7 34 73-106 16-50 (199)
145 2cvh_A DNA repair and recombin 98.8 6.5E-09 2.2E-13 87.8 7.7 102 77-215 16-120 (220)
146 3kta_A Chromosome segregation 98.8 3.5E-09 1.2E-13 87.2 5.9 116 73-193 18-153 (182)
147 3lnc_A Guanylate kinase, GMP k 98.8 1.4E-09 4.8E-14 93.4 3.3 34 73-106 18-53 (231)
148 1qhl_A Protein (cell division 98.8 3.6E-10 1.2E-14 97.4 -1.4 42 76-121 23-64 (227)
149 1vma_A Cell division protein F 98.7 1.9E-08 6.4E-13 90.4 8.4 96 76-211 99-197 (306)
150 1sxj_E Activator 1 40 kDa subu 98.7 2E-08 6.8E-13 91.1 8.1 126 83-239 38-178 (354)
151 1iy2_A ATP-dependent metallopr 98.7 1.5E-10 5E-15 102.4 -6.0 129 54-215 52-193 (278)
152 1jjv_A Dephospho-COA kinase; P 98.7 8.3E-08 2.9E-12 80.5 10.2 72 202-286 106-177 (206)
153 2kjq_A DNAA-related protein; s 98.7 4.3E-08 1.5E-12 78.8 7.8 27 80-106 35-61 (149)
154 1ixz_A ATP-dependent metallopr 98.7 9E-11 3.1E-15 102.2 -8.7 125 53-201 27-164 (254)
155 3nwj_A ATSK2; P loop, shikimat 98.6 7E-09 2.4E-13 90.6 1.6 53 49-106 15-73 (250)
156 1f2t_B RAD50 ABC-ATPase; DNA d 98.6 8.1E-09 2.8E-13 83.1 1.7 61 176-236 51-124 (148)
157 2vf7_A UVRA2, excinuclease ABC 98.6 1E-08 3.4E-13 103.4 1.7 90 168-257 362-475 (842)
158 3uie_A Adenylyl-sulfate kinase 98.6 1.1E-08 3.8E-13 85.8 1.4 34 73-106 16-50 (200)
159 3a00_A Guanylate kinase, GMP k 98.6 1.7E-08 6E-13 83.7 2.6 26 81-106 1-26 (186)
160 2j41_A Guanylate kinase; GMP, 98.6 2.5E-08 8.5E-13 83.4 3.5 34 77-113 2-35 (207)
161 2px0_A Flagellar biosynthesis 98.6 5.9E-07 2E-11 80.2 12.6 43 79-134 103-145 (296)
162 1lvg_A Guanylate kinase, GMP k 98.6 2.6E-08 8.9E-13 83.6 3.3 28 79-106 2-29 (198)
163 2if2_A Dephospho-COA kinase; a 98.6 2.2E-07 7.4E-12 77.7 8.9 70 202-285 106-175 (204)
164 1udx_A The GTP-binding protein 98.5 1.5E-09 5.2E-14 101.5 -7.0 118 74-206 149-276 (416)
165 1kgd_A CASK, peripheral plasma 98.5 6.8E-08 2.3E-12 79.7 3.6 28 79-106 3-30 (180)
166 3k1j_A LON protease, ATP-depen 98.5 4.3E-08 1.5E-12 95.9 2.3 159 56-226 39-226 (604)
167 3t61_A Gluconokinase; PSI-biol 98.4 5.2E-06 1.8E-10 69.2 13.2 26 81-106 18-43 (202)
168 4eun_A Thermoresistant glucoki 98.4 2.1E-07 7.1E-12 77.9 4.1 31 76-106 24-54 (200)
169 3ec2_A DNA replication protein 98.3 1.4E-07 4.8E-12 77.4 2.4 35 76-113 33-67 (180)
170 3r20_A Cytidylate kinase; stru 98.3 2.1E-06 7.1E-11 74.0 9.7 61 226-286 147-211 (233)
171 1ls1_A Signal recognition part 98.3 1.4E-06 4.8E-11 77.7 8.5 34 80-116 97-130 (295)
172 3tau_A Guanylate kinase, GMP k 98.3 3.3E-07 1.1E-11 77.3 3.9 28 79-106 6-33 (208)
173 3lw7_A Adenylate kinase relate 98.3 8.9E-06 3E-10 65.3 11.8 78 201-285 78-160 (179)
174 3lda_A DNA repair protein RAD5 98.3 1.2E-06 4.1E-11 81.4 7.3 30 77-106 174-205 (400)
175 1n0w_A DNA repair protein RAD5 98.3 4.4E-07 1.5E-11 77.5 3.6 28 77-104 20-47 (243)
176 3cr8_A Sulfate adenylyltranfer 98.2 3.8E-07 1.3E-11 88.1 3.1 34 77-113 365-398 (552)
177 3kta_B Chromosome segregation 98.2 5.8E-07 2E-11 74.0 3.4 62 177-238 59-130 (173)
178 1knq_A Gluconate kinase; ALFA/ 98.2 7.9E-07 2.7E-11 72.4 4.2 28 79-106 6-33 (175)
179 4ad8_A DNA repair protein RECN 98.2 6.6E-07 2.3E-11 85.9 4.2 62 179-240 393-463 (517)
180 1w1w_A Structural maintenance 98.2 8.6E-07 2.9E-11 83.0 4.2 57 182-238 333-400 (430)
181 2f6r_A COA synthase, bifunctio 98.2 1.2E-06 4.1E-11 77.5 4.6 72 201-285 181-252 (281)
182 1kag_A SKI, shikimate kinase I 98.2 8.5E-07 2.9E-11 71.9 3.4 27 80-106 3-29 (173)
183 2p67_A LAO/AO transport system 98.2 3.5E-07 1.2E-11 83.2 1.0 57 51-115 30-87 (341)
184 2ius_A DNA translocase FTSK; n 98.2 1.7E-07 5.7E-12 89.7 -1.2 39 76-116 162-201 (512)
185 2vp4_A Deoxynucleoside kinase; 98.2 5.6E-07 1.9E-11 77.1 2.2 29 76-104 15-43 (230)
186 2grj_A Dephospho-COA kinase; T 98.2 4.6E-06 1.6E-10 69.7 7.6 26 81-106 12-37 (192)
187 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 9.2E-07 3.2E-11 81.9 3.1 40 77-119 16-67 (392)
188 2r6a_A DNAB helicase, replicat 98.1 6.4E-06 2.2E-10 77.7 8.8 118 76-214 198-327 (454)
189 1cke_A CK, MSSA, protein (cyti 98.1 6.8E-07 2.3E-11 75.8 1.9 37 81-117 5-41 (227)
190 1zu4_A FTSY; GTPase, signal re 98.1 1.4E-06 4.8E-11 78.6 4.0 41 74-117 97-138 (320)
191 3ney_A 55 kDa erythrocyte memb 98.1 1.9E-06 6.6E-11 72.3 4.0 31 76-106 14-44 (197)
192 3trf_A Shikimate kinase, SK; a 98.1 1.6E-05 5.4E-10 65.0 9.3 27 80-106 4-30 (185)
193 1oix_A RAS-related protein RAB 98.0 1.7E-06 5.9E-11 71.5 2.4 24 83-106 31-54 (191)
194 1svm_A Large T antigen; AAA+ f 98.0 2.3E-06 8E-11 78.9 3.2 34 73-106 160-194 (377)
195 2dhr_A FTSH; AAA+ protein, hex 98.0 4.9E-07 1.7E-11 86.3 -1.6 32 73-106 57-89 (499)
196 2pez_A Bifunctional 3'-phospho 97.9 4.6E-06 1.6E-10 68.2 3.7 28 79-106 3-30 (179)
197 3m6a_A ATP-dependent protease 97.9 2E-06 6.8E-11 83.1 1.4 60 51-119 83-143 (543)
198 2www_A Methylmalonic aciduria 97.9 4.9E-06 1.7E-10 75.9 3.6 36 79-117 72-107 (349)
199 2iyv_A Shikimate kinase, SK; t 97.9 1.4E-05 4.7E-10 65.5 5.8 25 82-106 3-27 (184)
200 1m7g_A Adenylylsulfate kinase; 97.9 2.1E-06 7.3E-11 72.3 0.3 35 76-113 20-54 (211)
201 1f2t_A RAD50 ABC-ATPase; DNA d 97.8 1.3E-05 4.3E-10 64.1 4.4 29 76-105 19-47 (149)
202 2f9l_A RAB11B, member RAS onco 97.8 5.1E-06 1.7E-10 68.9 2.1 23 83-105 7-29 (199)
203 3d3q_A TRNA delta(2)-isopenten 97.8 6.1E-06 2.1E-10 74.9 2.7 25 82-106 8-32 (340)
204 2yvu_A Probable adenylyl-sulfa 97.8 1.2E-05 4E-10 66.1 3.9 31 76-106 8-38 (186)
205 2qor_A Guanylate kinase; phosp 97.8 1.3E-05 4.6E-10 66.9 3.4 30 77-106 8-37 (204)
206 1w1w_A Structural maintenance 97.7 1.1E-05 3.9E-10 75.4 2.8 34 76-112 21-54 (430)
207 2dr3_A UPF0273 protein PH0284; 97.7 1.7E-05 5.9E-10 67.5 3.4 29 77-105 19-47 (247)
208 4eaq_A DTMP kinase, thymidylat 97.6 4E-05 1.4E-09 65.6 4.7 29 78-106 23-51 (229)
209 3cm0_A Adenylate kinase; ATP-b 97.6 3.6E-05 1.2E-09 62.8 4.0 28 79-106 2-29 (186)
210 3ice_A Transcription terminati 97.6 3.9E-05 1.3E-09 70.6 4.2 56 51-106 133-199 (422)
211 2ffh_A Protein (FFH); SRP54, s 97.6 5.2E-05 1.8E-09 70.9 4.8 33 80-115 97-129 (425)
212 1q3t_A Cytidylate kinase; nucl 97.6 4.6E-05 1.6E-09 65.1 4.1 29 78-106 13-41 (236)
213 3hr8_A Protein RECA; alpha and 97.6 3.6E-05 1.2E-09 70.3 3.5 35 77-114 57-91 (356)
214 4i1u_A Dephospho-COA kinase; s 97.6 0.0004 1.4E-08 58.6 9.7 73 201-285 112-184 (210)
215 3auy_A DNA double-strand break 97.5 2.3E-05 7.9E-10 71.9 2.0 59 179-237 277-348 (371)
216 2gj8_A MNME, tRNA modification 97.5 4.4E-05 1.5E-09 61.8 3.1 27 79-105 2-28 (172)
217 3kb2_A SPBC2 prophage-derived 97.5 5.9E-05 2E-09 60.5 3.8 24 83-106 3-26 (173)
218 1sxj_C Activator 1 40 kDa subu 97.5 3.4E-05 1.2E-09 69.6 2.4 39 73-114 35-76 (340)
219 1y63_A LMAJ004144AAA protein; 97.5 6.2E-05 2.1E-09 61.8 3.8 29 76-104 5-33 (184)
220 1j8m_F SRP54, signal recogniti 97.5 4.1E-05 1.4E-09 68.2 2.8 35 76-114 94-128 (297)
221 3qks_A DNA double-strand break 97.5 8.5E-05 2.9E-09 62.3 4.4 30 76-106 19-48 (203)
222 4a1f_A DNAB helicase, replicat 97.5 5.9E-05 2E-09 68.4 3.5 31 76-106 41-71 (338)
223 2ze6_A Isopentenyl transferase 97.4 9.6E-05 3.3E-09 64.1 4.6 25 82-106 2-26 (253)
224 2p5t_B PEZT; postsegregational 97.4 6.9E-05 2.3E-09 64.9 3.5 34 73-106 24-57 (253)
225 1np6_A Molybdopterin-guanine d 97.4 7.5E-05 2.6E-09 61.3 3.5 25 82-106 7-31 (174)
226 1qhx_A CPT, protein (chloramph 97.4 9.5E-05 3.2E-09 59.9 4.0 26 81-106 3-28 (178)
227 1fnn_A CDC6P, cell division co 97.4 0.0032 1.1E-07 56.9 14.0 28 79-106 40-69 (389)
228 4ad8_A DNA repair protein RECN 97.4 3.8E-05 1.3E-09 73.6 1.1 33 73-106 52-85 (517)
229 2ohf_A Protein OLA1, GTP-bindi 97.3 7.7E-05 2.6E-09 69.0 2.6 28 77-104 18-45 (396)
230 1kht_A Adenylate kinase; phosp 97.3 0.00013 4.5E-09 59.5 3.8 26 81-106 3-28 (192)
231 2wji_A Ferrous iron transport 97.3 9.4E-05 3.2E-09 59.2 2.8 24 82-105 4-27 (165)
232 2jaq_A Deoxyguanosine kinase; 97.3 0.00014 4.6E-09 60.0 3.9 24 83-106 2-25 (205)
233 1via_A Shikimate kinase; struc 97.3 0.00011 3.9E-09 59.5 3.3 24 83-106 6-29 (175)
234 2rhm_A Putative kinase; P-loop 97.3 0.00015 5.1E-09 59.3 4.0 28 79-106 3-30 (193)
235 3t34_A Dynamin-related protein 97.3 0.00014 4.7E-09 66.3 3.8 38 73-116 28-68 (360)
236 1vht_A Dephospho-COA kinase; s 97.3 0.00017 5.7E-09 60.6 4.1 24 80-103 3-26 (218)
237 2plr_A DTMP kinase, probable t 97.2 0.00022 7.6E-09 59.1 4.3 27 80-106 3-29 (213)
238 3bh0_A DNAB-like replicative h 97.2 0.00026 8.9E-09 63.4 5.0 30 76-105 63-92 (315)
239 3kl4_A SRP54, signal recogniti 97.2 0.00015 5.1E-09 67.9 3.4 27 80-106 96-122 (433)
240 1gvn_B Zeta; postsegregational 97.2 0.00022 7.5E-09 63.1 4.3 30 76-105 28-57 (287)
241 2zr9_A Protein RECA, recombina 97.2 0.00015 5.1E-09 66.0 3.3 30 77-106 57-86 (349)
242 3ake_A Cytidylate kinase; CMP 97.2 0.0002 7E-09 59.2 3.8 24 83-106 4-27 (208)
243 2qag_A Septin-2, protein NEDD5 97.2 7.7E-05 2.6E-09 68.2 1.2 45 51-106 17-62 (361)
244 1tev_A UMP-CMP kinase; ploop, 97.2 0.00024 8.4E-09 57.9 4.2 27 80-106 2-28 (196)
245 1uf9_A TT1252 protein; P-loop, 97.2 0.00021 7.2E-09 58.9 3.8 72 201-285 106-177 (203)
246 2c95_A Adenylate kinase 1; tra 97.2 0.00023 7.7E-09 58.4 3.9 28 79-106 7-34 (196)
247 2wjg_A FEOB, ferrous iron tran 97.2 0.00017 5.7E-09 58.6 3.1 23 82-104 8-30 (188)
248 1gtv_A TMK, thymidylate kinase 97.2 7.9E-05 2.7E-09 62.1 1.1 24 83-106 2-25 (214)
249 1ega_A Protein (GTP-binding pr 97.2 0.00015 5.1E-09 64.5 2.7 25 81-105 8-32 (301)
250 2v54_A DTMP kinase, thymidylat 97.2 0.00023 7.9E-09 58.8 3.7 26 80-105 3-28 (204)
251 1xjc_A MOBB protein homolog; s 97.2 0.00024 8.2E-09 58.0 3.7 25 82-106 5-29 (169)
252 3iij_A Coilin-interacting nucl 97.2 0.00022 7.4E-09 58.0 3.4 29 78-106 8-36 (180)
253 2wwf_A Thymidilate kinase, put 97.2 0.00024 8.2E-09 59.1 3.7 29 78-106 7-35 (212)
254 1ly1_A Polynucleotide kinase; 97.1 0.00025 8.7E-09 57.1 3.6 22 82-103 3-24 (181)
255 2zej_A Dardarin, leucine-rich 97.1 0.00015 5.1E-09 59.1 2.1 23 83-105 4-26 (184)
256 1nn5_A Similar to deoxythymidy 97.1 0.00028 9.6E-09 58.7 3.6 29 78-106 6-34 (215)
257 1ex7_A Guanylate kinase; subst 97.1 0.00027 9.3E-09 58.6 3.5 23 84-106 4-26 (186)
258 2bwj_A Adenylate kinase 5; pho 97.1 0.00022 7.6E-09 58.6 2.9 29 78-106 9-37 (199)
259 3zvl_A Bifunctional polynucleo 97.1 0.0011 3.7E-08 61.7 7.8 29 78-106 255-283 (416)
260 2dy1_A Elongation factor G; tr 97.1 0.00031 1.1E-08 69.3 4.3 39 76-115 4-42 (665)
261 1mky_A Probable GTP-binding pr 97.1 0.00024 8.3E-09 66.5 3.0 24 82-105 181-204 (439)
262 1nks_A Adenylate kinase; therm 97.1 0.00032 1.1E-08 57.2 3.4 24 83-106 3-26 (194)
263 1aky_A Adenylate kinase; ATP:A 97.0 0.00043 1.5E-08 58.2 4.1 28 79-106 2-29 (220)
264 2z0h_A DTMP kinase, thymidylat 97.0 0.0004 1.4E-08 56.9 3.8 24 83-106 2-25 (197)
265 2vli_A Antibiotic resistance p 97.0 0.00026 9E-09 57.4 2.6 27 80-106 4-30 (183)
266 3lxx_A GTPase IMAP family memb 97.0 0.00034 1.2E-08 59.6 3.2 24 83-106 31-54 (239)
267 1zuh_A Shikimate kinase; alpha 97.0 0.00049 1.7E-08 55.2 3.9 25 82-106 8-32 (168)
268 1ypw_A Transitional endoplasmi 97.0 0.00037 1.3E-08 70.3 3.7 30 77-106 234-263 (806)
269 3fb4_A Adenylate kinase; psych 97.0 0.0005 1.7E-08 57.4 3.9 24 83-106 2-25 (216)
270 1lv7_A FTSH; alpha/beta domain 96.9 0.00056 1.9E-08 58.9 4.2 24 83-106 47-70 (257)
271 1ukz_A Uridylate kinase; trans 96.9 0.0006 2E-08 56.4 4.2 28 79-106 13-40 (203)
272 2cdn_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 56.4 4.2 28 79-106 18-45 (201)
273 4ag6_A VIRB4 ATPase, type IV s 96.9 0.00047 1.6E-08 63.4 3.8 35 80-117 34-68 (392)
274 3cf0_A Transitional endoplasmi 96.9 0.0005 1.7E-08 60.9 3.9 30 77-106 45-74 (301)
275 1e6c_A Shikimate kinase; phosp 96.9 0.00047 1.6E-08 55.3 3.3 25 82-106 3-27 (173)
276 1qf9_A UMP/CMP kinase, protein 96.9 0.00056 1.9E-08 55.6 3.8 26 81-106 6-31 (194)
277 2pbr_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 55.8 3.8 24 83-106 2-25 (195)
278 2pt5_A Shikimate kinase, SK; a 96.9 0.00064 2.2E-08 54.3 3.9 24 83-106 2-25 (168)
279 3crm_A TRNA delta(2)-isopenten 96.9 0.0011 3.8E-08 59.6 5.8 25 82-106 6-30 (323)
280 1zd8_A GTP:AMP phosphotransfer 96.9 0.00055 1.9E-08 57.9 3.6 28 79-106 5-32 (227)
281 3dl0_A Adenylate kinase; phosp 96.9 0.00061 2.1E-08 57.0 3.7 24 83-106 2-25 (216)
282 4fcw_A Chaperone protein CLPB; 96.9 0.00071 2.4E-08 59.6 4.2 31 81-114 47-77 (311)
283 1zak_A Adenylate kinase; ATP:A 96.8 0.00055 1.9E-08 57.6 3.2 27 80-106 4-30 (222)
284 3tlx_A Adenylate kinase 2; str 96.8 0.00084 2.9E-08 57.6 4.3 28 79-106 27-54 (243)
285 3k53_A Ferrous iron transport 96.8 0.00049 1.7E-08 60.0 2.8 23 83-105 5-27 (271)
286 3exa_A TRNA delta(2)-isopenten 96.8 0.0014 4.8E-08 58.7 5.6 26 81-106 3-28 (322)
287 1m2o_B GTP-binding protein SAR 96.8 0.0008 2.7E-08 55.0 3.4 31 73-104 15-46 (190)
288 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.001 3.5E-08 57.7 4.2 27 80-106 3-29 (260)
289 1jal_A YCHF protein; nucleotid 96.7 0.001 3.5E-08 60.8 4.2 24 81-104 2-25 (363)
290 2qtf_A Protein HFLX, GTP-bindi 96.7 0.00058 2E-08 62.5 2.6 28 79-106 176-204 (364)
291 3foz_A TRNA delta(2)-isopenten 96.7 0.0024 8.1E-08 57.1 6.3 26 81-106 10-35 (316)
292 2ged_A SR-beta, signal recogni 96.7 0.001 3.5E-08 54.1 3.6 25 81-105 48-72 (193)
293 3auy_A DNA double-strand break 96.7 0.00089 3.1E-08 61.2 3.5 27 76-103 21-47 (371)
294 3a8t_A Adenylate isopentenyltr 96.7 0.0023 7.7E-08 57.9 6.0 27 80-106 39-65 (339)
295 2xb4_A Adenylate kinase; ATP-b 96.7 0.0012 4E-08 55.9 3.8 24 83-106 2-25 (223)
296 1z2a_A RAS-related protein RAB 96.6 0.0012 4E-08 52.0 3.6 23 83-105 7-29 (168)
297 2dyk_A GTP-binding protein; GT 96.6 0.0013 4.4E-08 51.5 3.6 23 83-105 3-25 (161)
298 3be4_A Adenylate kinase; malar 96.6 0.0012 4.3E-08 55.3 3.7 27 80-106 4-30 (217)
299 1v5w_A DMC1, meiotic recombina 96.6 0.0014 4.9E-08 59.2 4.3 28 77-104 118-145 (343)
300 3umf_A Adenylate kinase; rossm 96.6 0.0016 5.5E-08 55.2 4.3 31 76-106 24-54 (217)
301 2ce2_X GTPase HRAS; signaling 96.6 0.0012 4.1E-08 51.6 3.3 23 83-105 5-27 (166)
302 1kao_A RAP2A; GTP-binding prot 96.6 0.0014 4.8E-08 51.4 3.6 23 83-105 5-27 (167)
303 3llm_A ATP-dependent RNA helic 96.6 0.00093 3.2E-08 56.9 2.7 29 76-104 71-99 (235)
304 1u8z_A RAS-related protein RAL 96.6 0.0014 4.9E-08 51.3 3.6 23 83-105 6-28 (168)
305 3eph_A TRNA isopentenyltransfe 96.6 0.0028 9.4E-08 58.7 5.9 26 81-106 2-27 (409)
306 3bos_A Putative DNA replicatio 96.6 0.0016 5.4E-08 54.6 4.0 27 80-106 51-77 (242)
307 1z0j_A RAB-22, RAS-related pro 96.5 0.0015 5.3E-08 51.4 3.6 23 83-105 8-30 (170)
308 2h92_A Cytidylate kinase; ross 96.5 0.0013 4.5E-08 54.9 3.4 26 81-106 3-28 (219)
309 1e4v_A Adenylate kinase; trans 96.5 0.0014 4.7E-08 54.8 3.5 24 83-106 2-25 (214)
310 1z08_A RAS-related protein RAB 96.5 0.0015 5.3E-08 51.5 3.6 23 83-105 8-30 (170)
311 2w58_A DNAI, primosome compone 96.5 0.0018 6E-08 53.4 4.1 25 82-106 55-79 (202)
312 1ky3_A GTP-binding protein YPT 96.5 0.0016 5.3E-08 52.0 3.6 23 83-105 10-32 (182)
313 2qmh_A HPR kinase/phosphorylas 96.5 0.0016 5.5E-08 54.5 3.7 32 73-104 26-57 (205)
314 1ek0_A Protein (GTP-binding pr 96.5 0.0016 5.6E-08 51.2 3.6 23 83-105 5-27 (170)
315 1c1y_A RAS-related protein RAP 96.5 0.0017 5.7E-08 51.1 3.6 22 83-104 5-26 (167)
316 1ak2_A Adenylate kinase isoenz 96.5 0.0019 6.5E-08 54.8 4.2 28 79-106 14-41 (233)
317 2lkc_A Translation initiation 96.5 0.0015 5.3E-08 52.0 3.4 26 79-104 6-31 (178)
318 1wms_A RAB-9, RAB9, RAS-relate 96.5 0.0017 5.9E-08 51.7 3.6 23 83-105 9-31 (177)
319 2erx_A GTP-binding protein DI- 96.5 0.0014 5E-08 51.6 3.1 22 83-104 5-26 (172)
320 1g16_A RAS-related protein SEC 96.5 0.0016 5.3E-08 51.4 3.3 23 83-105 5-27 (170)
321 3b9p_A CG5977-PA, isoform A; A 96.5 0.0018 6E-08 56.8 3.9 27 80-106 53-79 (297)
322 2fn4_A P23, RAS-related protei 96.5 0.0016 5.4E-08 51.9 3.4 22 83-104 11-32 (181)
323 4edh_A DTMP kinase, thymidylat 96.5 0.002 6.8E-08 54.4 4.0 27 80-106 5-31 (213)
324 3b1v_A Ferrous iron uptake tra 96.5 0.0013 4.3E-08 57.7 2.9 24 82-105 4-27 (272)
325 2qby_A CDC6 homolog 1, cell di 96.5 0.0014 4.8E-08 59.0 3.3 28 79-106 43-70 (386)
326 2nzj_A GTP-binding protein REM 96.5 0.0014 4.8E-08 52.0 2.9 23 83-105 6-28 (175)
327 3dm5_A SRP54, signal recogniti 96.5 0.0038 1.3E-07 58.5 6.2 27 80-106 99-125 (443)
328 1r2q_A RAS-related protein RAB 96.4 0.002 6.8E-08 50.7 3.6 22 83-104 8-29 (170)
329 2q6t_A DNAB replication FORK h 96.4 0.0081 2.8E-07 56.2 8.3 30 77-106 196-225 (444)
330 3clv_A RAB5 protein, putative; 96.4 0.002 6.8E-08 52.2 3.6 24 82-105 8-31 (208)
331 2ce7_A Cell division protein F 96.4 0.0016 5.5E-08 61.7 3.4 29 76-106 46-74 (476)
332 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0021 7.1E-08 51.7 3.6 23 83-105 6-28 (189)
333 1upt_A ARL1, ADP-ribosylation 96.4 0.0025 8.5E-08 50.3 4.1 25 80-104 6-30 (171)
334 2oil_A CATX-8, RAS-related pro 96.4 0.002 7E-08 52.3 3.6 23 83-105 27-49 (193)
335 3q85_A GTP-binding protein REM 96.4 0.0016 5.4E-08 51.5 2.8 23 83-105 4-26 (169)
336 3bc1_A RAS-related protein RAB 96.4 0.0021 7.1E-08 51.8 3.6 22 83-104 13-34 (195)
337 3v9p_A DTMP kinase, thymidylat 96.4 0.0017 5.7E-08 55.5 3.1 29 78-106 22-50 (227)
338 1ltq_A Polynucleotide kinase; 96.4 0.002 6.7E-08 56.7 3.6 24 82-105 3-26 (301)
339 3lxw_A GTPase IMAP family memb 96.4 0.0017 5.8E-08 55.8 3.1 24 82-105 22-45 (247)
340 1r8s_A ADP-ribosylation factor 96.4 0.0022 7.6E-08 50.3 3.6 23 83-105 2-24 (164)
341 3lv8_A DTMP kinase, thymidylat 96.4 0.002 7E-08 55.3 3.6 27 80-106 26-52 (236)
342 1svi_A GTP-binding protein YSX 96.4 0.0015 5.1E-08 53.1 2.6 23 82-104 24-46 (195)
343 3q72_A GTP-binding protein RAD 96.4 0.0011 3.8E-08 52.2 1.8 23 83-105 4-26 (166)
344 1sky_E F1-ATPase, F1-ATP synth 96.4 0.0012 4.1E-08 62.2 2.2 34 73-106 143-176 (473)
345 3con_A GTPase NRAS; structural 96.4 0.0022 7.5E-08 51.9 3.6 23 83-105 23-45 (190)
346 1fzq_A ADP-ribosylation factor 96.4 0.0011 3.8E-08 53.6 1.8 24 81-104 16-39 (181)
347 3pqc_A Probable GTP-binding pr 96.3 0.0015 5.3E-08 52.8 2.6 23 83-105 25-47 (195)
348 2a9k_A RAS-related protein RAL 96.3 0.0023 7.9E-08 51.2 3.6 24 82-105 19-42 (187)
349 1z0f_A RAB14, member RAS oncog 96.3 0.0023 8E-08 50.8 3.6 23 83-105 17-39 (179)
350 2y8e_A RAB-protein 6, GH09086P 96.3 0.0021 7.3E-08 51.0 3.3 22 83-104 16-37 (179)
351 2g6b_A RAS-related protein RAB 96.3 0.0024 8.2E-08 51.0 3.6 23 83-105 12-34 (180)
352 3ihw_A Centg3; RAS, centaurin, 96.3 0.0024 8.3E-08 51.9 3.6 22 83-104 22-43 (184)
353 1moz_A ARL1, ADP-ribosylation 96.3 0.0016 5.5E-08 52.2 2.5 25 79-103 16-40 (183)
354 1jbk_A CLPB protein; beta barr 96.3 0.003 1E-07 50.6 4.1 28 79-106 41-68 (195)
355 3t1o_A Gliding protein MGLA; G 96.3 0.0024 8.3E-08 51.6 3.6 24 83-106 16-39 (198)
356 2ocp_A DGK, deoxyguanosine kin 96.3 0.0026 8.7E-08 54.2 3.8 27 80-106 1-27 (241)
357 3tw8_B RAS-related protein RAB 96.3 0.0015 5.1E-08 52.1 2.1 22 83-104 11-32 (181)
358 2hxs_A RAB-26, RAS-related pro 96.3 0.0023 7.9E-08 51.0 3.2 22 83-104 8-29 (178)
359 2cxx_A Probable GTP-binding pr 96.3 0.0017 5.8E-08 52.4 2.4 23 83-105 3-25 (190)
360 2efe_B Small GTP-binding prote 96.3 0.0027 9.3E-08 50.7 3.6 23 83-105 14-36 (181)
361 1f6b_A SAR1; gtpases, N-termin 96.3 0.0011 3.9E-08 54.5 1.4 30 73-103 17-47 (198)
362 3ld9_A DTMP kinase, thymidylat 96.3 0.0031 1.1E-07 53.7 4.1 29 78-106 18-46 (223)
363 4tmk_A Protein (thymidylate ki 96.3 0.0026 8.9E-08 53.7 3.6 27 80-106 2-28 (213)
364 2z43_A DNA repair and recombin 96.3 0.0024 8.4E-08 57.1 3.6 29 77-105 103-131 (324)
365 1vg8_A RAS-related protein RAB 96.2 0.0028 9.5E-08 52.0 3.6 23 83-105 10-32 (207)
366 1nrj_B SR-beta, signal recogni 96.2 0.0027 9.2E-08 52.7 3.6 23 83-105 14-36 (218)
367 2bme_A RAB4A, RAS-related prot 96.2 0.0025 8.6E-08 51.2 3.3 23 83-105 12-34 (186)
368 2wsm_A Hydrogenase expression/ 96.2 0.0025 8.4E-08 53.1 3.3 26 81-106 30-55 (221)
369 2e87_A Hypothetical protein PH 96.2 0.0017 5.8E-08 59.0 2.4 27 79-105 165-191 (357)
370 2bov_A RAla, RAS-related prote 96.2 0.0028 9.6E-08 51.8 3.6 23 83-105 16-38 (206)
371 3kkq_A RAS-related protein M-R 96.2 0.0029 9.9E-08 50.8 3.6 22 83-104 20-41 (183)
372 2dby_A GTP-binding protein; GD 96.2 0.0023 8E-08 58.5 3.3 23 83-105 3-25 (368)
373 1wf3_A GTP-binding protein; GT 96.2 0.0022 7.5E-08 57.0 3.1 23 83-105 9-31 (301)
374 3sr0_A Adenylate kinase; phosp 96.2 0.0031 1.1E-07 52.9 3.9 24 83-106 2-25 (206)
375 3tmk_A Thymidylate kinase; pho 96.2 0.0031 1.1E-07 53.4 3.8 28 79-106 3-30 (216)
376 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0026 9E-08 51.3 3.3 22 83-104 9-30 (184)
377 2gf9_A RAS-related protein RAB 96.2 0.0029 1E-07 51.2 3.6 23 83-105 24-46 (189)
378 3tkl_A RAS-related protein RAB 96.2 0.003 1E-07 51.2 3.6 23 83-105 18-40 (196)
379 3h4m_A Proteasome-activating n 96.2 0.0032 1.1E-07 54.7 4.0 29 78-106 48-76 (285)
380 2fg5_A RAB-22B, RAS-related pr 96.2 0.0028 9.7E-08 51.6 3.4 23 83-105 25-47 (192)
381 1mh1_A RAC1; GTP-binding, GTPa 96.2 0.0032 1.1E-07 50.5 3.6 22 83-104 7-28 (186)
382 2gf0_A GTP-binding protein DI- 96.2 0.003 1E-07 51.3 3.4 23 82-104 9-31 (199)
383 1z06_A RAS-related protein RAB 96.2 0.0034 1.2E-07 50.8 3.6 22 83-104 22-43 (189)
384 1njg_A DNA polymerase III subu 96.1 0.0026 9E-08 52.8 3.0 24 83-106 47-70 (250)
385 2xtp_A GTPase IMAP family memb 96.1 0.0024 8.2E-08 54.9 2.8 24 82-105 23-46 (260)
386 3iby_A Ferrous iron transport 96.1 0.0024 8.2E-08 55.3 2.8 23 83-105 3-25 (256)
387 2cjw_A GTP-binding protein GEM 96.1 0.0034 1.2E-07 51.4 3.6 23 83-105 8-30 (192)
388 3t5g_A GTP-binding protein RHE 96.1 0.0032 1.1E-07 50.4 3.3 22 83-104 8-29 (181)
389 3oes_A GTPase rhebl1; small GT 96.1 0.0031 1.1E-07 51.7 3.3 26 80-105 23-48 (201)
390 3dz8_A RAS-related protein RAB 96.1 0.0032 1.1E-07 51.2 3.3 23 83-105 25-47 (191)
391 2a5j_A RAS-related protein RAB 96.1 0.0036 1.2E-07 50.9 3.6 23 83-105 23-45 (191)
392 3iev_A GTP-binding protein ERA 96.1 0.0027 9.3E-08 56.5 3.1 23 83-105 12-34 (308)
393 3bwd_D RAC-like GTP-binding pr 96.1 0.0038 1.3E-07 49.8 3.6 23 82-104 9-31 (182)
394 1l8q_A Chromosomal replication 96.1 0.0029 1E-07 56.2 3.2 27 80-106 36-62 (324)
395 2ew1_A RAS-related protein RAB 96.1 0.0034 1.1E-07 52.0 3.3 23 83-105 28-50 (201)
396 1zd9_A ADP-ribosylation factor 96.1 0.0038 1.3E-07 50.6 3.6 24 82-105 23-46 (188)
397 2atv_A RERG, RAS-like estrogen 96.1 0.004 1.4E-07 50.8 3.6 24 81-104 28-51 (196)
398 3reg_A RHO-like small GTPase; 96.1 0.0039 1.3E-07 50.7 3.6 24 82-105 24-47 (194)
399 1x3s_A RAS-related protein RAB 96.0 0.004 1.4E-07 50.3 3.6 24 82-105 16-39 (195)
400 2p5s_A RAS and EF-hand domain 96.0 0.004 1.4E-07 51.0 3.6 24 82-105 29-52 (199)
401 1p5z_B DCK, deoxycytidine kina 96.0 0.0019 6.4E-08 55.9 1.6 29 78-106 21-49 (263)
402 3a1s_A Iron(II) transport prot 96.0 0.0034 1.1E-07 54.4 3.1 23 83-105 7-29 (258)
403 2bcg_Y Protein YP2, GTP-bindin 96.0 0.0038 1.3E-07 51.3 3.3 23 83-105 10-32 (206)
404 1zbd_A Rabphilin-3A; G protein 96.0 0.0035 1.2E-07 51.3 3.1 23 83-105 10-32 (203)
405 2p65_A Hypothetical protein PF 96.0 0.0039 1.3E-07 49.9 3.3 28 79-106 41-68 (187)
406 3cph_A RAS-related protein SEC 96.0 0.0043 1.5E-07 51.0 3.6 27 79-105 18-44 (213)
407 2iwr_A Centaurin gamma 1; ANK 96.0 0.0032 1.1E-07 50.3 2.7 22 83-104 9-30 (178)
408 1ypw_A Transitional endoplasmi 96.0 0.0019 6.6E-08 65.0 1.7 31 76-106 506-536 (806)
409 3cbq_A GTP-binding protein REM 96.0 0.002 7E-08 52.9 1.5 23 83-105 25-47 (195)
410 3c5c_A RAS-like protein 12; GD 96.0 0.0046 1.6E-07 50.2 3.6 23 83-105 23-45 (187)
411 2i1q_A DNA repair and recombin 96.0 0.0042 1.4E-07 55.3 3.7 28 77-104 94-121 (322)
412 1ko7_A HPR kinase/phosphatase; 96.0 0.0036 1.2E-07 55.9 3.1 24 80-103 143-166 (314)
413 3i8s_A Ferrous iron transport 96.0 0.0033 1.1E-07 54.9 2.8 23 83-105 5-27 (274)
414 1ksh_A ARF-like protein 2; sma 96.0 0.0037 1.3E-07 50.3 2.9 26 79-104 16-41 (186)
415 2fv8_A H6, RHO-related GTP-bin 95.9 0.0042 1.4E-07 51.2 3.4 24 82-105 26-49 (207)
416 2fh5_B SR-beta, signal recogni 95.9 0.0046 1.6E-07 51.1 3.6 24 82-105 8-31 (214)
417 1gwn_A RHO-related GTP-binding 95.9 0.0043 1.5E-07 51.5 3.3 23 83-105 30-52 (205)
418 3t5d_A Septin-7; GTP-binding p 95.9 0.0025 8.6E-08 55.5 2.0 22 83-104 10-31 (274)
419 4hlc_A DTMP kinase, thymidylat 95.9 0.0058 2E-07 51.1 4.1 26 81-106 2-27 (205)
420 3gmt_A Adenylate kinase; ssgci 95.9 0.0052 1.8E-07 52.5 3.8 24 83-106 10-33 (230)
421 1jwy_B Dynamin A GTPase domain 95.9 0.0034 1.2E-07 55.4 2.8 23 83-105 26-48 (315)
422 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0058 2E-07 52.2 4.2 28 79-106 37-64 (262)
423 1u94_A RECA protein, recombina 95.9 0.0045 1.6E-07 56.3 3.6 29 78-106 60-88 (356)
424 3tqf_A HPR(Ser) kinase; transf 95.9 0.005 1.7E-07 50.4 3.3 29 75-103 10-38 (181)
425 2h17_A ADP-ribosylation factor 95.9 0.0033 1.1E-07 50.6 2.3 23 82-104 22-44 (181)
426 2hf9_A Probable hydrogenase ni 95.9 0.0046 1.6E-07 51.6 3.3 26 81-106 38-63 (226)
427 2o52_A RAS-related protein RAB 95.9 0.0036 1.2E-07 51.4 2.5 22 83-104 27-48 (200)
428 2z4s_A Chromosomal replication 95.9 0.0045 1.5E-07 57.9 3.5 26 81-106 130-155 (440)
429 1zj6_A ADP-ribosylation factor 95.8 0.0049 1.7E-07 49.8 3.2 25 80-104 15-39 (187)
430 2qu8_A Putative nucleolar GTP- 95.8 0.0037 1.3E-07 52.5 2.6 24 81-104 29-52 (228)
431 2gco_A H9, RHO-related GTP-bin 95.8 0.005 1.7E-07 50.5 3.3 23 83-105 27-49 (201)
432 2il1_A RAB12; G-protein, GDP, 95.8 0.0032 1.1E-07 51.3 2.0 23 83-105 28-50 (192)
433 4dhe_A Probable GTP-binding pr 95.8 0.0017 5.8E-08 54.1 0.3 24 82-105 30-53 (223)
434 1sxj_D Activator 1 41 kDa subu 95.8 0.0049 1.7E-07 55.0 3.3 24 83-106 60-83 (353)
435 2atx_A Small GTP binding prote 95.8 0.0055 1.9E-07 49.7 3.4 22 83-104 20-41 (194)
436 2h57_A ADP-ribosylation factor 95.8 0.0026 8.9E-08 51.6 1.4 24 82-105 22-45 (190)
437 4bas_A ADP-ribosylation factor 95.8 0.0036 1.2E-07 50.9 2.1 24 81-104 17-40 (199)
438 2f7s_A C25KG, RAS-related prot 95.8 0.0047 1.6E-07 51.2 2.9 22 83-104 27-48 (217)
439 2zts_A Putative uncharacterize 95.8 0.0065 2.2E-07 51.3 3.8 26 77-102 26-51 (251)
440 2fu5_C RAS-related protein RAB 95.8 0.0033 1.1E-07 50.4 1.9 22 83-104 10-31 (183)
441 3def_A T7I23.11 protein; chlor 95.7 0.0046 1.6E-07 53.5 2.8 24 82-105 37-60 (262)
442 2q3h_A RAS homolog gene family 95.7 0.005 1.7E-07 50.3 2.8 25 80-104 19-43 (201)
443 2v3c_C SRP54, signal recogniti 95.7 0.0043 1.5E-07 58.0 2.6 25 82-106 100-124 (432)
444 2j1l_A RHO-related GTP-binding 95.7 0.0047 1.6E-07 51.4 2.6 22 83-104 36-57 (214)
445 2hup_A RAS-related protein RAB 95.7 0.0065 2.2E-07 49.9 3.4 22 83-104 31-52 (201)
446 3p32_A Probable GTPase RV1496/ 95.7 0.0084 2.9E-07 54.3 4.3 28 79-106 77-104 (355)
447 3llu_A RAS-related GTP-binding 95.6 0.0051 1.7E-07 50.3 2.6 24 83-106 22-45 (196)
448 1h65_A Chloroplast outer envel 95.6 0.0052 1.8E-07 53.3 2.8 24 82-105 40-63 (270)
449 2aka_B Dynamin-1; fusion prote 95.6 0.0048 1.6E-07 53.9 2.6 23 83-105 28-50 (299)
450 3cnl_A YLQF, putative uncharac 95.6 0.0051 1.7E-07 53.5 2.7 25 82-106 100-124 (262)
451 4gzl_A RAS-related C3 botulinu 95.6 0.0069 2.3E-07 49.9 3.3 25 80-104 29-53 (204)
452 3cpj_B GTP-binding protein YPT 95.6 0.0079 2.7E-07 50.2 3.7 23 83-105 15-37 (223)
453 3q3j_B RHO-related GTP-binding 95.5 0.0086 2.9E-07 49.8 3.6 23 82-104 28-50 (214)
454 2g3y_A GTP-binding protein GEM 95.5 0.0067 2.3E-07 50.9 2.9 22 83-104 39-60 (211)
455 1g8f_A Sulfate adenylyltransfe 95.5 0.0088 3E-07 57.0 4.0 29 78-106 392-420 (511)
456 3syl_A Protein CBBX; photosynt 95.5 0.0092 3.1E-07 52.3 3.8 28 79-106 65-92 (309)
457 2yc2_C IFT27, small RAB-relate 95.5 0.0033 1.1E-07 51.4 0.8 23 82-104 21-43 (208)
458 3n70_A Transport activator; si 95.5 0.0092 3.2E-07 46.6 3.4 28 79-106 22-49 (145)
459 3t15_A Ribulose bisphosphate c 95.4 0.0094 3.2E-07 52.5 3.8 29 78-106 33-61 (293)
460 2chg_A Replication factor C sm 95.4 0.0096 3.3E-07 48.7 3.6 24 83-106 40-63 (226)
461 2b6h_A ADP-ribosylation factor 95.4 0.0094 3.2E-07 48.6 3.4 24 80-103 28-51 (192)
462 2j0v_A RAC-like GTP-binding pr 95.4 0.0088 3E-07 49.3 3.3 23 82-104 10-32 (212)
463 2v1u_A Cell division control p 95.4 0.0088 3E-07 53.8 3.5 28 79-106 42-69 (387)
464 2r62_A Cell division protease 95.4 0.0044 1.5E-07 53.4 1.3 23 84-106 47-69 (268)
465 1m8p_A Sulfate adenylyltransfe 95.3 0.011 3.8E-07 57.2 4.2 28 79-106 394-421 (573)
466 4djt_A GTP-binding nuclear pro 95.3 0.0031 1.1E-07 52.3 0.2 22 83-104 13-34 (218)
467 2orw_A Thymidine kinase; TMTK, 95.3 0.012 4.1E-07 48.2 3.7 25 80-104 2-26 (184)
468 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.012 4.1E-07 52.5 3.9 28 78-105 42-69 (322)
469 4dcu_A GTP-binding protein ENG 95.2 0.0057 1.9E-07 57.4 1.7 23 83-105 25-47 (456)
470 3hws_A ATP-dependent CLP prote 95.2 0.011 3.7E-07 53.5 3.5 27 80-106 50-76 (363)
471 1x6v_B Bifunctional 3'-phospho 95.2 0.013 4.5E-07 57.2 4.2 27 80-106 51-77 (630)
472 3l0o_A Transcription terminati 95.2 0.0097 3.3E-07 54.8 2.9 34 73-106 167-200 (427)
473 3fdi_A Uncharacterized protein 95.1 0.013 4.5E-07 48.7 3.6 25 82-106 7-31 (201)
474 2j37_W Signal recognition part 95.1 0.015 5E-07 55.4 4.0 28 79-106 99-126 (504)
475 1ofh_A ATP-dependent HSL prote 95.1 0.014 4.7E-07 51.0 3.6 26 81-106 50-75 (310)
476 2xau_A PRE-mRNA-splicing facto 95.0 0.0095 3.2E-07 59.7 2.7 137 76-240 104-257 (773)
477 1d2n_A N-ethylmaleimide-sensit 95.0 0.017 5.7E-07 49.9 4.0 28 79-106 62-89 (272)
478 2x77_A ADP-ribosylation factor 95.0 0.01 3.5E-07 47.8 2.4 24 80-103 21-44 (189)
479 3geh_A MNME, tRNA modification 95.0 0.01 3.6E-07 55.8 2.8 28 78-105 221-248 (462)
480 1puj_A YLQF, conserved hypothe 95.0 0.013 4.5E-07 51.4 3.2 26 80-105 119-144 (282)
481 3uk6_A RUVB-like 2; hexameric 95.0 0.015 5.3E-07 52.2 3.8 28 79-106 68-95 (368)
482 1tue_A Replication protein E1; 95.0 0.014 4.9E-07 48.9 3.2 29 78-106 55-83 (212)
483 3gj0_A GTP-binding nuclear pro 94.9 0.01 3.5E-07 49.3 2.3 23 83-105 17-40 (221)
484 2xxa_A Signal recognition part 94.9 0.028 9.7E-07 52.4 5.5 27 80-106 99-125 (433)
485 3d8b_A Fidgetin-like protein 1 94.9 0.018 6.1E-07 52.1 4.0 28 79-106 115-142 (357)
486 3pvs_A Replication-associated 94.9 0.01 3.5E-07 55.7 2.4 24 83-106 52-75 (447)
487 3eie_A Vacuolar protein sortin 94.9 0.018 6.3E-07 51.2 4.0 28 79-106 49-76 (322)
488 2gks_A Bifunctional SAT/APS ki 94.9 0.019 6.3E-07 55.3 4.3 28 79-106 370-397 (546)
489 2vhj_A Ntpase P4, P4; non- hyd 94.9 0.016 5.6E-07 51.9 3.6 28 77-104 119-146 (331)
490 2axn_A 6-phosphofructo-2-kinas 94.8 0.02 6.9E-07 54.7 4.3 27 80-106 34-60 (520)
491 2qby_B CDC6 homolog 3, cell di 94.8 0.019 6.3E-07 51.8 3.8 27 80-106 44-70 (384)
492 3r7w_A Gtpase1, GTP-binding pr 94.8 0.015 5.1E-07 51.5 3.1 24 81-104 3-26 (307)
493 2qgz_A Helicase loader, putati 94.8 0.021 7.1E-07 50.7 4.0 26 81-106 152-177 (308)
494 1bif_A 6-phosphofructo-2-kinas 94.8 0.021 7.2E-07 53.7 4.2 28 79-106 37-64 (469)
495 3th5_A RAS-related C3 botulinu 93.8 0.0052 1.8E-07 50.4 0.0 24 81-104 30-53 (204)
496 3hjn_A DTMP kinase, thymidylat 94.8 0.02 6.9E-07 47.4 3.6 24 83-106 2-25 (197)
497 1xp8_A RECA protein, recombina 94.8 0.016 5.6E-07 52.8 3.3 29 77-105 70-98 (366)
498 4b4t_K 26S protease regulatory 94.7 0.022 7.6E-07 53.0 4.2 29 78-106 203-231 (428)
499 1yrb_A ATP(GTP)binding protein 94.7 0.025 8.5E-07 48.3 4.2 27 79-105 12-38 (262)
500 1wxq_A GTP-binding protein; st 94.7 0.013 4.6E-07 54.0 2.6 23 83-105 2-24 (397)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.4e-40 Score=302.00 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=166.5
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++.|++..++ +++ +++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~i~~ls~~y~~~~~L-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~ 74 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVL-----NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTN 74 (359)
T ss_dssp CCEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCB
T ss_pred cEEEEEeEEEEECCEEEE-----EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECcccccc
Confidence 478999999999998888 999 9999999999999999999999999999999 9999999988532
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
.+.++|++|+...++ .+||++|+.++....+.+.....+++.++++.++ ...++++.+|||||||||+||+|
T Consensus 75 ~~~~~r~ig~vfQ~~~l~p--~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 75 LPVRERRLGYLVQEGVLFP--HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CCGGGSCCEEECTTCCCCT--TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cchhhCCEEEEeCCCcCCC--CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 245999999965433 4899999998766555555555677888998888 45678899999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|++|++|||+..||.. +++.+.++.. ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999993 3333444332 24799999999987 555 89999999999864
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4e-39 Score=296.45 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=167.0
Q ss_pred CCCCccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 47 NAQPVFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
..+++++++++++.|+. ..++ +++ ++|++||++||+||||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL-----~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~ 91 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQAL-----NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQE 91 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEE
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEE-----EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEE
Confidence 56679999999999975 3456 888 9999999999999999999999999999999 999999998864
Q ss_pred C-----------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccC
Q 023126 122 P-----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVG 188 (287)
Q Consensus 122 ~-----------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~ 188 (287)
. ++.++|+||++..++ .+||++|+.++...++.+.....+++.++|+.++ ...++++.+||||||
T Consensus 92 i~~~~~~~~~~~r~~Ig~v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqk 169 (366)
T 3tui_C 92 LTTLSESELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169 (366)
T ss_dssp CSSCCHHHHHHHHTTEEEECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHH
T ss_pred CCcCCHHHHHHHhCcEEEEeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 3 235999999965433 4899999999887776655556677889999888 456788999999999
Q ss_pred CchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 189 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 189 qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|||+||+|++.+|++|++||++..||+ .+++.++++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999 45555555532 24699999999877 554 8999999998
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 250 ev~~ 253 (366)
T 3tui_C 250 EVFS 253 (366)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8753
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.4e-39 Score=299.64 Aligned_cols=197 Identities=15% Similarity=0.110 Sum_probs=168.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
.++++++++.|+...++ +++ +.+++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~yg~~~~L-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVS-----KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGGG
T ss_pred EEEEEeEEEEECCEEEE-----eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHHH
Confidence 58899999999988888 999 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ .+||.+|+.++...++.++....+++.++++.++ ...++++.+|||||||||+||+|++.+|
T Consensus 75 r~ig~VfQ~~~l~p--~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 75 RGVGMVFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp SCEEEECTTCCCCT--TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 45999999965433 4999999999887776665556678889999887 4567889999999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..||+|||+++++. |++ |++++.|++++++.
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999998 44555555533 24699999999987 555 89999999999764
No 4
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-38 Score=292.81 Aligned_cols=201 Identities=16% Similarity=0.193 Sum_probs=166.9
Q ss_pred CCCCccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 47 NAQPVFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
-+.++++++++++.| +...++ +++ +++++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~ 81 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSV-----RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTD 81 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTT
T ss_pred CCCceEEEEEEEEEEcCCCEEE-----eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCc
Confidence 356789999999999 877777 888 9999999999999999999999999999999 9999999988543
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhh
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.++|++|+...++ .+|+++|+.++....+.+.....+++.++++.++ ...++++.+||||||||++||+|
T Consensus 82 ~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 82 LPPQKRNVGLVFQNYALFQ--HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARA 159 (355)
T ss_dssp CCGGGSSEEEECGGGCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 245999999965433 4899999999876655544444567888898887 45678889999999999999999
Q ss_pred hccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|++|++|||+..||. .+++.|+++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999998 44455555432 24699999999877 554 88999999998764
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-39 Score=287.89 Aligned_cols=201 Identities=16% Similarity=0.115 Sum_probs=166.4
Q ss_pred CCccccCccccccccc-chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTS-LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
.++++++++++.|+.. .++ +++ +++++||++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L-----~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~ 76 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHAL-----KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSR 76 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEE-----EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSH
T ss_pred CcEEEEEEEEEEECCCCeEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCccc
Confidence 4689999999999754 466 888 9999999999999999999999999999999 9999999998654
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
++.++|++|++..... .+|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||
T Consensus 77 ~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 77 KGIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp HHHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred ccHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 1349999998642222 3799999999877666554445667888898887 456788889999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhh-c---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~-~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
+|++.+|++|++|||+..||+ .+++.+.++. + .+|++|||++++.. |++ |++++.|+++++...
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998 4555565554 2 24699999999876 554 899999999987543
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.8e-38 Score=290.51 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=164.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFGNFTAL-----NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CEEEEEEEEESSSSEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred EEEEEeEEEEECCEEEE-----EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHhH
Confidence 57899999999987777 888 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++....+.+.....+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 75 r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 75 RNVGLVFQNWALYP--HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp TTEEEECTTCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45999999965433 5899999999876655544444567888998887 4567788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999 44455555432 24799999999876 554 89999999998864
No 7
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.4e-38 Score=279.62 Aligned_cols=201 Identities=15% Similarity=0.154 Sum_probs=161.8
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
.+.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 20 ~m~~~l~i~~l~~~y~~~~vL-----~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~ 91 (263)
T 2olj_A 20 HMLQMIDVHQLKKSFGSLEVL-----KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAK 91 (263)
T ss_dssp --CCSEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSST
T ss_pred CchheEEEEeEEEEECCEEEE-----EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCc
Confidence 344589999999999987777 888 9999999999999999999999999999999 9999999988543
Q ss_pred -------CceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchh
Q 023126 123 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 123 -------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ 192 (287)
++.++|++|++..++ .+|+++|+.+.. ...+.+.....+++.++++.++ ...++++.+||||||||++
T Consensus 92 ~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 92 DTNLNKVREEVGMVFQRFNLFP--HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp TCCHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHH
T ss_pred cccHHHHhCcEEEEeCCCcCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHH
Confidence 124899999965433 489999999864 3334332233456788888887 3467788899999999999
Q ss_pred hhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
||+|++.+|++|++|||+..||+ .+++.++++.+ .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999 44555555433 24699999999876 444 88888898888753
No 8
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-38 Score=279.66 Aligned_cols=199 Identities=14% Similarity=0.112 Sum_probs=161.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 4 ~~~l~i~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGGHEVL-----KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp -CCEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEEC
T ss_pred CceEEEeeEEEEECCEEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccc
Confidence 4579999999999987777 888 9999999999999999999999999999999 99999999885432
Q ss_pred -----------------ceeEEEeCCCCCCCcccCCccccHHHHH-HhcCCCCCchHHHHHHHHHHhcc--C-CCCCCCC
Q 023126 124 -----------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--Q-GSVYAPS 182 (287)
Q Consensus 124 -----------------~~i~~v~qd~~~~~~~~ltv~e~i~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~-~~~~~~~ 182 (287)
+.++|++|++..++ .+|+.+|+.+.. ..++.+.....+++.++++.++. . .++++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWS--HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCC--CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 24899999965333 489999999854 33333322334567888888873 3 5788889
Q ss_pred CCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hcccc
Q 023126 183 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIS 248 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~ 248 (287)
||||||||++||+|++.+|++|++|||+..||. .+++.++++.+ .+|++|||++++.. |++ |++++
T Consensus 154 LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999 44455555433 34699999999876 544 88888
Q ss_pred CCChHHHHH
Q 023126 249 TGKPPDVAK 257 (287)
Q Consensus 249 ~G~~~ev~~ 257 (287)
.|+++++..
T Consensus 234 ~g~~~~~~~ 242 (262)
T 1b0u_A 234 EGDPEQVFG 242 (262)
T ss_dssp EECHHHHHH
T ss_pred eCCHHHHHh
Confidence 999888753
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.2e-38 Score=290.58 Aligned_cols=197 Identities=13% Similarity=0.117 Sum_probs=158.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 11 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAV-----NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred eEEEEEEEEEECCEEEE-----eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChhh
Confidence 58999999999987777 888 9999999999999999999999999999999 9999999988543 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 83 r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 160 (372)
T 1v43_A 83 RNISMVFQSYAVWP--HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEP 160 (372)
T ss_dssp GTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 45999999965333 5899999988654444333334567888888887 4567889999999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 161 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999998 34455555432 24799999999876 554 89999999998864
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-38 Score=290.86 Aligned_cols=197 Identities=16% Similarity=0.110 Sum_probs=162.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAV-----DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEEECCEEEE-----eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChhh
Confidence 57899999999987777 888 9999999999999999999999999999999 9999999988542 2
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 75 r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 75 REVGMVFQNYALYP--HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp TTEEEECSSCCCCT--TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45999999965433 5899999998654443332333457788888887 4567888999999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999 34455555432 24699999999876 554 89999999998864
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.9e-38 Score=290.51 Aligned_cols=197 Identities=14% Similarity=0.088 Sum_probs=164.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------- 122 (287)
+++++++++.|+...++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAV-----REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp EEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGTE
T ss_pred EEEEEeEEEEECCEEEE-----eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECccccccc
Confidence 57899999999987777 888 9999999999999999999999999999999 9999999887432
Q ss_pred -----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhh
Q 023126 123 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 -----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~ 195 (287)
.+.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||+
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYP--HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cCCHhHCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 235999999965433 5999999999876665544444567888888887 4567888999999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
|++.+|++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999999999 34455555432 24799999999876 554 89999999998864
No 12
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.6e-37 Score=275.85 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=163.7
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++||++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 9 ~~~l~~~~l~~~~~~~~vL-----~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALI-----NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp CCEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCH
T ss_pred cceEEEEeEEEEeCCeeEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCH
Confidence 3589999999999998888 999 9999999999999999999999999999999 99999999886532
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++|++|++...+. +|+.+|+.++...+ ......+++.++++.++ ...++++.+||||||||++||+|+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~--~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFP--FSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp HHHHHHEEEECSCCCCCSC--CBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhheEEEEecCCccCCC--CCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 248999998765443 89999998764433 23345667888888888 345678889999999999999999
Q ss_pred cc------CccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 198 GL------QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 198 ~~------~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
+. +|++|++|||+..||+ .+++.++++.+ ..|++|||++++.. |++ |++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999998 45555555532 24689999999876 554 8999999998875
Q ss_pred H
Q 023126 257 K 257 (287)
Q Consensus 257 ~ 257 (287)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 3
No 13
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.4e-38 Score=289.63 Aligned_cols=197 Identities=14% Similarity=0.071 Sum_probs=162.5
Q ss_pred ccccCcccccccccc--hhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----
Q 023126 51 VFGKTRSLVQNKTSL--KVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~--~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~----- 122 (287)
+++++++++.|+... ++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~l~i~~l~~~y~~~~~~vl-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~ 74 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVAL-----DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGK 74 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEE-----EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEECCEeeeeE-----eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECccccc
Confidence 588999999998876 77 888 9999999999999999999999999999999 9999999887432
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhh
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia 194 (287)
++.++|++|+...++ ++|+++|+.++...++.+.....+++.++++.++ ...++++.+||||||||++||
T Consensus 75 ~~~~~~~r~ig~v~Q~~~l~~--~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 75 LIVPPEDRKIGMVFQTWALYP--NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp ESSCGGGSCEEEEETTSCCCT--TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ccCChhhCCEEEEeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 245999999965433 5899999998765444443334567888898887 456788899999999999999
Q ss_pred hhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++.
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999 44455555432 24699999999876 554 89999999998764
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.7e-38 Score=271.01 Aligned_cols=180 Identities=15% Similarity=0.053 Sum_probs=148.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~l~~~~l~~~y~~~~~l-----~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYEIL-----KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp CEEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCH
T ss_pred CcEEEEEeEEEEECCEeeE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCH
Confidence 3578999999999987777 888 9999999999999999999999999999999 99999999885431
Q ss_pred --------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhh
Q 023126 124 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 124 --------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~i 193 (287)
..++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++ ...++++.+||||||||+++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l 151 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIP--ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI 151 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred HHHHHHHhCcEEEEecCcccCC--CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence 34999999965433 4899999998765554332334556788888887 34567888999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
|+|++.+|+++++|||+..||. .+++.+.++.+ ..|++|||++.+
T Consensus 152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9999999999999999999999 34455555432 246999999986
No 15
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.5e-37 Score=285.25 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=159.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~------ 123 (287)
+++++++++.|+.. ++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 ml~~~~l~~~y~~~-~l-----~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~ 71 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SL-----DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEK 71 (348)
T ss_dssp CEEEEEEEEECSSC-EE-----EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHH
T ss_pred CEEEEEEEEEECCE-EE-----eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhh
Confidence 36788999999876 77 888 9999999999999999999999999999999 99999999885432
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|+...++ ++|+++|+.++...++.+. . +++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 72 r~ig~v~Q~~~l~~--~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 72 HDIAFVYQNYSLFP--HMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp HTCEEECTTCCCCT--TSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEEecCcccCC--CCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 34999999965433 5899999999876554432 2 67888888887 4567888899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|++|||+..||. .+++.++++.+ ..|++|||++++.. |++ |++++.|++++++
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999 44555555432 24699999999876 554 8888889998875
No 16
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-37 Score=275.24 Aligned_cols=200 Identities=14% Similarity=0.063 Sum_probs=162.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 12 ~~~~l~i~~l~~~y~~~~vl-----~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~ 83 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKEIL-----KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83 (256)
T ss_dssp --CCEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred cCCeEEEEEEEEEECCEEEE-----EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence 35789999999999987777 888 9999999999999999999999999999999 99999999885432
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhh
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al 197 (287)
+.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++ ...++++.+||||||||++||+|+
T Consensus 84 ~~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 84 HEVRKLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp HHHHTTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhhcEEEEcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 34999999975433 4899999998765554432223456778888887 345778889999999999999999
Q ss_pred ccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999 45555555542 24689999999865 444 88888888888754
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3e-37 Score=270.28 Aligned_cols=199 Identities=15% Similarity=0.068 Sum_probs=159.0
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~~~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~ 73 (240)
T 1ji0_A 2 VSDIVLEVQSLHVYYGAIHAI-----KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNK 73 (240)
T ss_dssp CCSEEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTC
T ss_pred CCCceEEEEeEEEEECCeeEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCC
Confidence 446789999999999987777 888 9999999999999999999999999999999 99999999885431
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---cCCCCCCCCCCcccCCchhh
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~lSgG~~qrv~i 193 (287)
..++|++|++..++ .+|+.||+.+... .........+++.++++.++ ...++++.+||||||||++|
T Consensus 74 ~~~~~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 74 PAHVINRMGIALVPEGRRIFP--ELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp CHHHHHHTTEEEECSSCCCCT--TSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHH
T ss_pred CHHHHHhCCEEEEecCCccCC--CCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHH
Confidence 23999999975433 4899999987531 11222333456677777773 45678889999999999999
Q ss_pred hhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
|+|++.+|++|++|||+..||. .+++.++++.+ .+|++|||++++.. |++ |++++.|+++++.
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999999999 44455555432 34699999988765 444 7888888887764
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.3e-37 Score=270.19 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=151.6
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
+++++++++.|+. ..++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L-----~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYAL-----KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceeeE-----EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccC
Confidence 3678899999974 3456 888 9999999999999999999999999999999 99999999885431
Q ss_pred ----------ceeEEEeCCCCCCCcccCCccccHHHHHHhc---CCCCCchHHHHHHHHHHhccC---CCCCCCCCCccc
Q 023126 124 ----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV 187 (287)
Q Consensus 124 ----------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~ 187 (287)
..++|++|++..++ .+|+++|+.+..... ........+++.++++.++.. .++++.+|||||
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred CHHHHHHHhhccEEEEecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHH
Confidence 24999999975443 489999999876543 222223455677888888732 377888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||++||+|++.+|++|++|||+..||+ .+++.+.++.. .+|++|||++.+.. |++ |++++.++++
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999998 45555555532 24699999996522 443 7777766665
Q ss_pred HH
Q 023126 254 DV 255 (287)
Q Consensus 254 ev 255 (287)
++
T Consensus 231 ~~ 232 (235)
T 3tif_A 231 GF 232 (235)
T ss_dssp --
T ss_pred hh
Confidence 53
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2e-37 Score=274.10 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=158.3
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
.++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~~l~i~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKAL-----DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEP 76 (257)
T ss_dssp CEEEEEEEEEEEETTEEEE-----EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCH
T ss_pred CcEEEEeeeEEEECCEeeE-----eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCH
Confidence 4579999999999987777 888 9999999999999999999999999999999 99999999885431
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHh--cC-----------CCCCchHHHHHHHHHHhc--cCCCCCCCCC
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLR--NQGSVYAPSF 183 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~--~~~~~~~~~l 183 (287)
..++|++|++..++ .+|+.||+.+.... .+ .......+++.++++.++ ...++++.+|
T Consensus 77 ~~~~~~~i~~v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLK--EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp HHHHHHTEEECCCCCGGGG--GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHHhCCEEEEccCCccCC--CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 24899999965333 48999999875432 12 122223456788888887 4467788899
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHIST 249 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~ 249 (287)
|||||||++||+|++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 234 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAE 234 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999 44555555433 24689999998765 544 788888
Q ss_pred CChHH
Q 023126 250 GKPPD 254 (287)
Q Consensus 250 G~~~e 254 (287)
|++++
T Consensus 235 g~~~~ 239 (257)
T 1g6h_A 235 GRGEE 239 (257)
T ss_dssp EESHH
T ss_pred eCHHH
Confidence 88888
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.4e-37 Score=275.46 Aligned_cols=202 Identities=13% Similarity=0.024 Sum_probs=159.2
Q ss_pred CCCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 47 NAQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...++++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 17 ~~~~~l~~~~l~~~y~~~~vL-----~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~ 88 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMKQGKTIL-----KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKV 88 (279)
T ss_dssp --CEEEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC--
T ss_pred CCCceEEEEeEEEEECCEEEE-----EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccc
Confidence 345689999999999987777 888 9999999999999999999999999999999 99999999886542
Q ss_pred --------ceeEEEeCCCCCCCcccCCccccHHHHHHh----cCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCC
Q 023126 124 --------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 189 (287)
Q Consensus 124 --------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~----~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~q 189 (287)
+.++|++|++...+...+|+++|+.++... ++.......+++.++++.++ ...++++.+|||||||
T Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 89 GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp -CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHH
T ss_pred cCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHH
Confidence 349999998643333347999999764211 11122233456778888887 4467888899999999
Q ss_pred chhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---Cc--eEEEeCHHHHHH---HHh----hccccCCChH
Q 023126 190 PVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK--WFIEVDLDTAMQ---RVL----KRHISTGKPP 253 (287)
Q Consensus 190 rv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~--i~vtHd~~~~~~---rv~----gr~v~~G~~~ 253 (287)
|++||+|++.+|++|++|||+..||+ .+++.+.++.+ .+ |++|||++++.. |++ |++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999 44455555432 46 889999998755 544 7888888887
Q ss_pred HHH
Q 023126 254 DVA 256 (287)
Q Consensus 254 ev~ 256 (287)
++.
T Consensus 249 ~~~ 251 (279)
T 2ihy_A 249 DIL 251 (279)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-36 Score=265.98 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=158.0
Q ss_pred ccccCccccccc--c---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 51 VFGKTRSLVQNK--T---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~--~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
+++++++++.|+ . +.++ +++ +++++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl-----~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKAL-----ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCCcccccee-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECch
Confidence 578899999997 4 4566 888 9999999999999999999999999999999 9999999988653
Q ss_pred ---CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC----CCCCCCCCCcccCCchhhhh
Q 023126 123 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDI 195 (287)
Q Consensus 123 ---~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lSgG~~qrv~ia~ 195 (287)
++.++|++|++...+. .+|+.+|+.+....+ .+.....+++.++++.++.. .++++.+||||||||++||+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFF-AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp HHHGGGEEEECSSGGGGCC-CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred HHhhhhEEEEeccchhhcC-CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 2459999998532222 379999998754332 33334456788888888754 57788899999999999999
Q ss_pred hhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHHHH
Q 023126 196 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 258 (287)
Q Consensus 196 al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~~ 258 (287)
|++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++.+.. |++ |++++.|+++++...
T Consensus 152 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999 44555555432 24699999998765 444 788888888887643
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.8e-36 Score=262.58 Aligned_cols=192 Identities=15% Similarity=0.090 Sum_probs=152.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------C
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------P 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~ 123 (287)
+++++++++.|+. .+ +++ +.+++ +++||+||||||||||+|+|+|+++ |++|+|.++|.+. .
T Consensus 1 ml~~~~l~~~y~~--~l-----~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 69 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FR-----LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPER 69 (240)
T ss_dssp CCEEEEEEEEETT--EE-----EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTT
T ss_pred CEEEEEEEEEeCC--EE-----eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhh
Confidence 3678899999975 25 788 99999 9999999999999999999999999 9999999887432 3
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
+.++|++|++..++ .+|+++|+.+....++. ....+++.++++.++ ...++++.+||||||||+++|+|++.+|
T Consensus 70 ~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p 145 (240)
T 2onk_A 70 RGIGFVPQDYALFP--HLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP 145 (240)
T ss_dssp SCCBCCCSSCCCCT--TSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEcCCCccCC--CCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 45899999965433 48999999875322211 112456778888887 3456788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~~ 257 (287)
+++++|||+..||. .+++.+.++.. ..|++|||++++.. |++ |++++.|+++++..
T Consensus 146 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 146 RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999 45555555532 34699999998866 444 88888899888754
No 23
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.6e-35 Score=261.22 Aligned_cols=191 Identities=12% Similarity=0.102 Sum_probs=153.7
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
++++++++++.|+ .+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.+ .+.++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl-----~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~-----~~~i~ 69 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLF-----QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV-----YQSIG 69 (253)
T ss_dssp EEEEEEEEEEEETTTTEEE-----EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE-----CSCEE
T ss_pred ceEEEeeEEEEeCCCCeEE-----EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE-----eccEE
Confidence 4689999999998 77777 888 9999999999999999999999999999999 99999973 34599
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhc-C---CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCc
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQH 201 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~-~---~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a 201 (287)
|++|++..++ .+|+.+|+.+....+ + .+...+.+++.++++.++ ...++++.+||||||||++||+|++.+|
T Consensus 70 ~v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 147 (253)
T 2nq2_C 70 FVPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC 147 (253)
T ss_dssp EECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred EEcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999975443 379999998754322 2 112233456788888887 4467788899999999999999999999
Q ss_pred cEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 202 KVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 202 ~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
++|++|||+..||. .+++.+.++.+ .+|++|||++.+.. |++ |+ ++.|+++++.
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 148 KLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp SEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999 44555555543 24699999999865 444 78 8788877764
No 24
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-35 Score=250.43 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=146.0
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---Cce
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDV 125 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---~~~ 125 (287)
.+++++++++.|+. .++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. ...
T Consensus 9 ~~l~~~~ls~~y~~-~il-----~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 79 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVL-----ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGK 79 (214)
T ss_dssp CEEEEEEEEEESSS-EEE-----EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGG
T ss_pred ceEEEEEEEEEeCC-eEE-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCc
Confidence 46889999999987 777 888 9999999999999999999999999999999 9999999988542 345
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC-CCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
++|++|++..++ .+|+.+|+.+....++. .. ..+++.++++.++... ++++.+||||||||+++|+|++.+|+++
T Consensus 80 i~~v~q~~~~~~--~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll 155 (214)
T 1sgw_A 80 IFFLPEEIIVPR--KISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY 155 (214)
T ss_dssp EEEECSSCCCCT--TSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred EEEEeCCCcCCC--CCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999976433 48999999987654443 22 2567788888887322 7778899999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
++|||+..||. .+++.+.++.+ .+|++|||++++..
T Consensus 156 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 156 VLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp EEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99999999999 34455555432 34699999988654
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.9e-35 Score=261.20 Aligned_cols=197 Identities=13% Similarity=0.084 Sum_probs=151.9
Q ss_pred CCccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-
Q 023126 49 QPVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~- 123 (287)
..+++++++++.|+. +.++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVL-----QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQ 85 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGG
T ss_pred CceEEEEEEEEEeCCCCCceee-----EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEccc
Confidence 357899999999986 5566 888 9999999999999999999999999999999 99999999886431
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH------HHHHHHHHHh--c--cCCCCCCCCCCcc
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP------LLLLNCLKNL--R--NQGSVYAPSFDHG 186 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~------~~~~~~l~~l--~--~~~~~~~~~lSgG 186 (287)
..++|++|++.. +. .|+.+|+.++.... ...... ..+.+.++.+ + ...++++.+||||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG 160 (271)
T 2ixe_A 86 YDHHYLHTQVAAVGQEPLL-FG--RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGG 160 (271)
T ss_dssp BCHHHHHHHEEEECSSCCC-CS--SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHH
T ss_pred CCHHHHhccEEEEecCCcc-cc--ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHH
Confidence 349999999754 33 59999997642111 110111 1123445554 2 3356778899999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
|+||++||+|++.+|++|++|||+..||. .+++.|.++.. .+|++|||++.+.. |++ |++++.|++
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~ 240 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTH 240 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999 45555666543 24689999998754 444 788888998
Q ss_pred HHHHHH
Q 023126 253 PDVAKW 258 (287)
Q Consensus 253 ~ev~~~ 258 (287)
+++...
T Consensus 241 ~~l~~~ 246 (271)
T 2ixe_A 241 LQLMER 246 (271)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887643
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=7.2e-34 Score=249.24 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=149.7
Q ss_pred ccccCcccccc-cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 51 VFGKTRSLVQN-KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 51 ~~~~~~~~~~~-~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
+++++++++.| +.+.++ +++ +++++|++++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 72 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQIL-----RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLE 72 (243)
T ss_dssp CEEEEEEEECSSSSSCSE-----EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCS
T ss_pred CEEEEEEEEEeCCCCceE-----EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 36788999999 566666 888 9999999999999999999999999999999 9999999887432
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CC-----------CCCCCCCCccc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QG-----------SVYAPSFDHGV 187 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~-----------~~~~~~lSgG~ 187 (287)
++.++|++|++.. +. .|+.+|+.++.. . ....+++.+.++.++. .. +.++.+|||||
T Consensus 73 ~~~~~i~~v~q~~~l-~~--~tv~enl~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAI-MA--GTIRENLTYGLE----G-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp CCTTTCCEECCSSCC-CC--EEHHHHTTSCTT----S-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred HHHhhEEEEcCCCcc-cc--ccHHHHHhhhcc----C-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence 3458999999754 33 499999875311 1 1234456666766652 11 23456999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||+++|+|++.+|+++++|||+..||. .+++.+.++.. .+|++|||++.+.. |++ |++++.|+++++
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 224 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNEL 224 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999998 56666665543 24699999998755 444 788899998887
Q ss_pred HH
Q 023126 256 AK 257 (287)
Q Consensus 256 ~~ 257 (287)
..
T Consensus 225 ~~ 226 (243)
T 1mv5_A 225 VA 226 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 27
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.9e-34 Score=255.05 Aligned_cols=198 Identities=17% Similarity=0.041 Sum_probs=153.2
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~-- 123 (287)
.++++++++++.|+.+.++ +++ +++++|++++|+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 18 ~~~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~ 89 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAIL-----RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLAL 89 (267)
T ss_dssp --CEEEEEEEEEETTEEEE-----EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGS
T ss_pred CceEEEEeEEEEECCEEEE-----EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcC
Confidence 4579999999999887777 888 99999999999999999999999999998 46 89999999886431
Q ss_pred -------ceeEEEeCCCCCCCcccCCccccHHHHHH-h---cCCCC---CchHHHHHHHHHHhccC---CCCCCC-CCCc
Q 023126 124 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH 185 (287)
Q Consensus 124 -------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~-~---~~~~~---~~~~~~~~~~l~~l~~~---~~~~~~-~lSg 185 (287)
..++|++|++..++ .+|+.+|+.+... . ++... ....+++.++++.++.. .++++. +|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 167 (267)
T 2zu0_C 90 SPEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG 167 (267)
T ss_dssp CHHHHHHHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred CHHHHhhCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 13899999975443 4899999876542 1 22211 11234677888888742 456666 5999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhcC---ceEEEeCHHHHHH----HHh----hccccCC
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTG 250 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~~---~i~vtHd~~~~~~----rv~----gr~v~~G 250 (287)
|||||++||+|++.+|++|++|||+..||.. +++.++++.+. +|++|||++++.. |++ |++++.|
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g 247 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999993 44555554332 4689999988642 443 7888888
Q ss_pred ChHHHH
Q 023126 251 KPPDVA 256 (287)
Q Consensus 251 ~~~ev~ 256 (287)
+++++.
T Consensus 248 ~~~~~~ 253 (267)
T 2zu0_C 248 DFTLVK 253 (267)
T ss_dssp CTTHHH
T ss_pred CHHHHh
Confidence 888764
No 28
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.9e-34 Score=252.77 Aligned_cols=193 Identities=18% Similarity=0.056 Sum_probs=148.3
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCcccccCCCCCC----
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~--l~~~~p~~G~i~~~~~~~~---- 123 (287)
+++++++++.|+.+.++ +++ +++++|+++||+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 3 ~l~~~~l~~~y~~~~vl-----~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASIDGETIL-----KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEECCEEEE-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCCH
Confidence 68899999999987777 888 99999999999999999999999999998 78 99999999885431
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHh-cCC--CCCchHHHHHHHHHHhcc---CCCCCCCC-CCcccCCch
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRN---QGSVYAPS-FDHGVGDPV 191 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~-~~~--~~~~~~~~~~~~l~~l~~---~~~~~~~~-lSgG~~qrv 191 (287)
..++|++|++..++ .+|+.+|+.+.... .+. ......+++.++++.++. ..++++.+ ||||||||+
T Consensus 75 ~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred HHHHhCcEEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 23789999976443 48999999876432 222 111224567788888774 24677888 999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH----HHh----hccccCCChH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ----RVL----KRHISTGKPP 253 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ 253 (287)
+||+|++.+|++|++|||+..||. .+++.+.++.+ .+|++|||++++.. |++ |++++.|+++
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 999999999999999999999999 45555555533 24699999998753 443 7888888876
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.98 E-value=2.2e-34 Score=260.00 Aligned_cols=192 Identities=13% Similarity=0.093 Sum_probs=150.2
Q ss_pred CccccCccccccc-ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
..++++++++.|+ ...++ +++ +.+++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 52 ~~i~~~~vs~~y~~~~~vL-----~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~ 123 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETL-----QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQ 123 (306)
T ss_dssp CCEEEEEEEEESSTTCEEE-----EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCH
T ss_pred CeEEEEEEEEEcCCCCcee-----eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCH
Confidence 4688999999995 45566 888 9999999999999999999999999999999 99999999987543
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc-------------cCCCCCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-------------NQGSVYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~-------------~~~~~~~~~lSgG 186 (287)
..++|++|++..+ . .|+++|+.++.... ..+.+.+.++.++ .........||||
T Consensus 124 ~~~r~~i~~v~Q~~~lf-~--~Tv~eNi~~~~~~~------~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGG 194 (306)
T 3nh6_A 124 ASLRSHIGVVPQDTVLF-N--DTIADNIRYGRVTA------GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGG 194 (306)
T ss_dssp HHHHHTEEEECSSCCCC-S--EEHHHHHHTTSTTC------CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHH
T ss_pred HHHhcceEEEecCCccC-c--ccHHHHHHhhcccC------CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHH
Confidence 3499999997644 3 59999997643211 1223333333222 1223456799999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||++||+|++.+|++|++||++..||. .+++.+.++.. .+|+|||+++.+.. |++ |++++.|++++
T Consensus 195 qrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 195 EKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998 34445555433 34799999999876 554 89999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+...
T Consensus 275 l~~~ 278 (306)
T 3nh6_A 275 LLSR 278 (306)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8753
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.98 E-value=5.1e-34 Score=250.75 Aligned_cols=188 Identities=15% Similarity=0.179 Sum_probs=145.8
Q ss_pred cccCcccccc--cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC-----
Q 023126 52 FGKTRSLVQN--KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 123 (287)
Q Consensus 52 ~~~~~~~~~~--~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~----- 123 (287)
++++++++.| +.+.++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 8 ~~~~~l~~~y~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVIL-----DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEESSTTSCEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred eeEEEEEEEeCCCCccee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 5678999999 356666 888 9999999999999999999999999999999 99999999885432
Q ss_pred ---ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCccc
Q 023126 124 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 187 (287)
Q Consensus 124 ---~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSgG~ 187 (287)
..++|++|++..+ . .|+++|+.++. + ....+++.+.++.++. ..+.++.+|||||
T Consensus 80 ~~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVLL-N--RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp HHHHHEEEECSSCCCT-T--SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred HHHhcEEEEeCCCccc-c--ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 2489999997543 3 59999997641 1 1123444455554431 2234567999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 255 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev 255 (287)
|||++||+|++.+|+++++|||+..||. .+++.++++.. .+|++|||++.+.. |++ |++++.|+++++
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999 34455554432 24699999998754 444 788888988887
Q ss_pred H
Q 023126 256 A 256 (287)
Q Consensus 256 ~ 256 (287)
.
T Consensus 231 ~ 231 (247)
T 2ff7_A 231 L 231 (247)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.98 E-value=9.1e-34 Score=251.19 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=153.0
Q ss_pred ccccCcccccccc----cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC---
Q 023126 51 VFGKTRSLVQNKT----SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 122 (287)
Q Consensus 51 ~~~~~~~~~~~~~----~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--- 122 (287)
+++++++++.|+. +.++ +++ ++++ |++++|+||||||||||+|+|+|++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il-----~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~ 70 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSL-----ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKI 70 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEE-----EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGC
T ss_pred CEEEEEEEEEeCCCCccceeE-----EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcch
Confidence 3678899999987 6677 888 9999 9999999999999999999999986 8999999887432
Q ss_pred --CceeE-EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhh
Q 023126 123 --PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL 196 (287)
Q Consensus 123 --~~~i~-~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~a 196 (287)
++.++ |++|++.. .+|+.+|+.+....+ ....+++.++++.++.. .++++.+||||||||+++|+|
T Consensus 71 ~~~~~i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAra 142 (263)
T 2pjz_A 71 RNYIRYSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLA 142 (263)
T ss_dssp SCCTTEEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHH
T ss_pred HHhhheEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 34589 99999654 389999998865433 22356678888888743 567888999999999999999
Q ss_pred hccCccEEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHH----HHh----hccccCCChHHHHH
Q 023126 197 VGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 197 l~~~a~~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~----rv~----gr~v~~G~~~ev~~ 257 (287)
++.+|+++++|||+..||.. +++.++++....|++|||++.+.. +++ |++++.|+++++..
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 143 LASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999994 445555554445799999988754 333 78888888888754
No 32
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.98 E-value=4.9e-34 Score=251.03 Aligned_cols=187 Identities=18% Similarity=0.127 Sum_probs=149.2
Q ss_pred CccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------
Q 023126 50 PVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------ 122 (287)
++++++++++. .++ +++ +.+++|++++|+||||||||||+|+|+|+++ |+ |+|.++|.+.
T Consensus 3 ~~l~~~~l~~~----~vl-----~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 3 IVMQLQDVAES----TRL-----GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEEET----TTE-----EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHH
T ss_pred cEEEEEceEEE----EEE-----eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHH
Confidence 36788888876 344 788 9999999999999999999999999999999 99 9999988643
Q ss_pred --CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 123 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 123 --~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
++.++|++|++..++ .+|+.+|+.+... .. . ..+++.++++.++ ...++++.+||||||||+++|+|++
T Consensus 70 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~-~~---~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~ 142 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPF--ATPVWHYLTLHQH-DK---T-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL 142 (249)
T ss_dssp HHHHHEEEECSCCCCCT--TCBHHHHHHTTCS-ST---T-CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHhceEEEECCCCccCC--CCcHHHHHHHhhc-cC---C-cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 134899999976433 4899999976421 11 1 2566778888887 4467788899999999999999999
Q ss_pred cCcc-------EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH---HHh----hccccCCChHHHH
Q 023126 199 LQHK-------VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 256 (287)
Q Consensus 199 ~~a~-------~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~---rv~----gr~v~~G~~~ev~ 256 (287)
.+|+ +|++|||+..||. .+++.++++.. ..|++|||++.+.. |++ |++++.|+++++.
T Consensus 143 ~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 143 QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred cCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999 9999999999999 45555555532 24699999999865 444 7888888888764
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.97 E-value=9.1e-34 Score=247.72 Aligned_cols=187 Identities=11% Similarity=0.088 Sum_probs=144.2
Q ss_pred ccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 51 VFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 51 ~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
+++++++++.|+ .+.++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTL-----NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEE
T ss_pred eEEEEEEEEEeCCCCCcee-----eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEE
Confidence 578999999997 45666 888 9999999999999999999999999999999 9999999987 389
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---HHHhcc-------CCCCCCCCCCcccCCchhhhhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRN-------QGSVYAPSFDHGVGDPVEDDILV 197 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---l~~l~~-------~~~~~~~~lSgG~~qrv~ia~al 197 (287)
|++|++. ++ .+|+.+|+.+... .. ....+++.+. ++.++. ..++++.+||||||||+++|+|+
T Consensus 70 ~v~Q~~~-~~--~~tv~enl~~~~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL 142 (237)
T 2cbz_A 70 YVPQQAW-IQ--NDSLRENILFGCQ---LE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV 142 (237)
T ss_dssp EECSSCC-CC--SEEHHHHHHTTSC---CC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EEcCCCc-CC--CcCHHHHhhCccc---cC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999975 33 3799999976421 11 1222233222 222321 13567889999999999999999
Q ss_pred ccCccEEEEcCcccCCChhhHHHHHHhh-------c--CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 198 GLQHKVVIVDGNYLFLDGGVWKDVSSMF-------D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 198 ~~~a~~li~d~~~lllDe~~~~~l~~~~-------~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+.+|+++++|||+..||....+.+.+.. . .+|++|||++.+.. |++ |++++.|+++++..
T Consensus 143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 143 YSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 9999999999999999995555544433 1 24689999987643 443 78888899888754
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.97 E-value=2.3e-32 Score=237.66 Aligned_cols=186 Identities=11% Similarity=0.106 Sum_probs=142.7
Q ss_pred CCccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce
Q 023126 49 QPVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 125 (287)
Q Consensus 49 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~ 125 (287)
..+++++++++.|+ .+.++ +++ +++++|++++|+||||||||||+|+|+|+++ |++|+|.++| .
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~ 70 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVL-----KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----R 70 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSE-----EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----C
T ss_pred cceEEEEEEEEEeCCCCceee-----eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----E
Confidence 44788999999995 45666 888 9999999999999999999999999999999 9999999987 3
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------c----CCCCCCCCCCcccCCchh
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~lSgG~~qrv~ 192 (287)
++|++|++..+ + .|+++|+.++. ... ..+..+.++.++ . ..+.++.+||||||||++
T Consensus 71 i~~v~q~~~~~-~--~tv~enl~~~~-----~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~ 140 (229)
T 2pze_A 71 ISFCSQFSWIM-P--GTIKENIIFGV-----SYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARIS 140 (229)
T ss_dssp EEEECSSCCCC-S--BCHHHHHHTTS-----CCC--HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHH
T ss_pred EEEEecCCccc-C--CCHHHHhhccC-----CcC--hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHH
Confidence 89999997543 3 49999987631 111 111222222211 1 123346799999999999
Q ss_pred hhhhhccCccEEEEcCcccCCChhhHHHHHHh-hc------CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~~~~l~~~-~~------~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|+|++.+|+++++|||+..||....+.+.+. .. .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 141 lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 141 LARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999666666553 21 24689999998754 443 78888888887643
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.97 E-value=5.3e-33 Score=258.57 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=150.3
Q ss_pred CCccccCcccccc--cccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 49 QPVFGKTRSLVQN--KTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
...++++++++.| +...++ +++ ++|++||+++|+||||||||||+++|+|++ +++|+|.++|.+..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L-----~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~ 87 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAIL-----ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSI 87 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSE-----EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSS
T ss_pred CCeEEEEEEEEEecCCCeEEe-----eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcC
Confidence 3568999999999 667777 898 999999999999999999999999999987 56899999986532
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCC-----------CC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPS-----------FD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~-----------lS 184 (287)
+.++|++|+...+ + +|+++|+.+. .....+++.++++.++ ...++++.+ ||
T Consensus 88 ~~~~~rr~ig~v~Q~~~lf-~--~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 88 TLEQWRKAFGVIPQKVFIF-S--GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp CHHHHHHTEEEESCCCCCC-S--EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred ChHHHhCCEEEEcCCcccC-c--cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 4599999996543 3 6999988521 1223456777777776 334566665 99
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhh----HHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~----~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.+|++|++||++..||... ++.++++.. .+|++|||++.+.. |++ |++++.|++
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~ 237 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSI 237 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999844 444444332 24699999876544 554 899999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
++++.
T Consensus 238 ~el~~ 242 (390)
T 3gd7_A 238 LELYH 242 (390)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.97 E-value=3e-33 Score=247.65 Aligned_cols=191 Identities=15% Similarity=0.077 Sum_probs=146.7
Q ss_pred CCccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--
Q 023126 49 QPVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-- 122 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-- 122 (287)
.++++++++++.|+.. .++ +++ +.+++|++++|+||||||||||+|+|+|+++ | +|+|.++|.+.
T Consensus 15 ~~~l~i~~l~~~y~~~~~~~vl-----~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~ 85 (260)
T 2ghi_A 15 GVNIEFSDVNFSYPKQTNHRTL-----KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNK 85 (260)
T ss_dssp CCCEEEEEEEECCTTCCSSCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGG
T ss_pred CCeEEEEEEEEEeCCCCcCcee-----EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhh
Confidence 4578999999999863 456 888 9999999999999999999999999999997 7 89999988543
Q ss_pred ------CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCC
Q 023126 123 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSF 183 (287)
Q Consensus 123 ------~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~l 183 (287)
+..++|++|++..+ . .|+++|+.++. .. ...+++.+.++.++. ..+.++.+|
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~-~--~tv~enl~~~~-----~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 86 YNRNSIRSIIGIVPQDTILF-N--ETIKYNILYGK-----LD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp BCHHHHHTTEEEECSSCCCC-S--EEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred cCHHHHhccEEEEcCCCccc-c--cCHHHHHhccC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 23499999997543 3 59999987631 11 123344444444331 123567799
Q ss_pred CcccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCC
Q 023126 184 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGK 251 (287)
Q Consensus 184 SgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~ 251 (287)
|||||||+++|+|++.+|++|++|||+..||. .+++.+.++.. .+|++|||++.+.. |++ |++++.|+
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGT 236 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999 34445555433 24699999998654 444 78888899
Q ss_pred hHHHHH
Q 023126 252 PPDVAK 257 (287)
Q Consensus 252 ~~ev~~ 257 (287)
++++..
T Consensus 237 ~~~l~~ 242 (260)
T 2ghi_A 237 HKDLLK 242 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888764
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.96 E-value=7.5e-31 Score=256.62 Aligned_cols=192 Identities=15% Similarity=0.087 Sum_probs=150.9
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC----
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 122 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~---- 122 (287)
..++++++++.|++ +.++ +++ +++++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l-----~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~ 411 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPAL-----SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYK 411 (582)
T ss_pred CeEEEEEEEEEcCCCCcccc-----ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCC
Confidence 46899999999975 5566 888 9999999999999999999999999999999 9999999998643
Q ss_pred ----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---------C----CCCCCCCCCc
Q 023126 123 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDH 185 (287)
Q Consensus 123 ----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lSg 185 (287)
++.++|++|++..+ + .|++||+.++.. + ....+++.+.++.++. + ......+|||
T Consensus 412 ~~~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 412 LTNLRRHFALVSQNVHLF-N--DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred HHHHhcCeEEEcCCCccc-c--ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 24599999997644 3 499999986421 1 1234455555555431 1 1234569999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|.+ +++.+.++.+ ..|++||+++.+.. |++ |++++.|+++
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999993 4444555432 24699999998765 554 8999999999
Q ss_pred HHHH
Q 023126 254 DVAK 257 (287)
Q Consensus 254 ev~~ 257 (287)
++..
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 8764
No 38
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.96 E-value=6.1e-31 Score=238.50 Aligned_cols=221 Identities=19% Similarity=0.230 Sum_probs=162.9
Q ss_pred CCccccCcccccccccchhhhhh----------cCccc-------eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQ----------RREIP-------VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 111 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~----------~~~~~-------~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~ 111 (287)
...++++++++.|+.....+... .+..+ .+++|+++||+||||||||||+++|+|+++ |+
T Consensus 41 ~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~---~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA---RW 117 (312)
T ss_dssp TCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH---TS
T ss_pred CCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc---cc
Confidence 34577788888886432221111 01111 378999999999999999999999999999 87
Q ss_pred CcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC-CCCCCCCCcccCCc
Q 023126 112 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDP 190 (287)
Q Consensus 112 ~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG~~qr 190 (287)
.|. ..+++++||+++++ . |+.+|+.+. ..++.+.+.+.+.+.+.++.++... +.+++.|||||+||
T Consensus 118 ~G~---------~~v~~v~qd~~~~~--~-t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qR 184 (312)
T 3aez_A 118 DHH---------PRVDLVTTDGFLYP--N-AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDI 184 (312)
T ss_dssp TTC---------CCEEEEEGGGGBCC--H-HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEE
T ss_pred CCC---------CeEEEEecCccCCc--c-cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhh
Confidence 663 34899999987543 2 777776542 1235566677788888998888433 46788999999999
Q ss_pred hhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhcccc----------------CCChHH
Q 023126 191 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TGKPPD 254 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~----------------~G~~~e 254 (287)
+++|++++.++++||+||+++++|... ..+.++++..|||+|+.+.+.+|.+.|.+. .|.+++
T Consensus 185 v~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e 263 (312)
T 3aez_A 185 IPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDS 263 (312)
T ss_dssp EEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHH
T ss_pred hhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHH
Confidence 999999999999999999999987311 246677788899999999988876654331 244444
Q ss_pred HH----HHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 255 VA----KWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 255 v~----~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
.+ ..+|....+|+++ ||.|.+.+||+|+++..
T Consensus 264 ~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 264 QAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred HHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 33 3445666788887 99999999999998653
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.96 E-value=7.8e-31 Score=256.52 Aligned_cols=193 Identities=12% Similarity=0.083 Sum_probs=151.4
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++.|++ +.++ +++ +++++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l-----~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~ 411 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPAL-----RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYT 411 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSE-----EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBC
T ss_pred CcEEEEEEEEEcCCCCCccc-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccC
Confidence 46899999999974 5566 888 9999999999999999999999999999999 99999999986542
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc-------------CCCCCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lSg 185 (287)
+.++|++|++..+ + .|++||+.++.. + ....+++.++++.++. .......+|||
T Consensus 412 ~~~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSg 483 (582)
T 3b60_A 412 LASLRNQVALVSQNVHLF-N--DTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483 (582)
T ss_dssp HHHHHHTEEEECSSCCCC-S--SBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCH
T ss_pred HHHHHhhCeEEccCCcCC-C--CCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCH
Confidence 2499999997644 3 499999986421 1 1234455555554431 12345679999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|+ .+++.+.++.+ ..|++||+++.+.. |++ |++++.|+++
T Consensus 484 Gq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999 34444555432 24699999998755 444 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
++...
T Consensus 564 ~l~~~ 568 (582)
T 3b60_A 564 ELLAQ 568 (582)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 98653
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.96 E-value=3.2e-30 Score=231.36 Aligned_cols=183 Identities=11% Similarity=0.137 Sum_probs=128.0
Q ss_pred CCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
.+.++++++++.+ +.++ +++ +.+++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++
T Consensus 38 ~~~l~~~~l~~~~--~~vl-----~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~ 102 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--TPVL-----KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS 102 (290)
T ss_dssp ------------C--CCSE-----EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEE
T ss_pred CceEEEEEEEEcC--ceEE-----EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEE
Confidence 3568889988853 4455 888 9999999999999999999999999999999 9999999987 389
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------c----CCCCCCCCCCcccCCchhhh
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~lSgG~~qrv~ia 194 (287)
|++|++.. ++ .|+++|+. .. ... .....+.++.++ . ..+.++.+||||||||+++|
T Consensus 103 ~v~Q~~~l-~~--~tv~enl~-~~---~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 103 FCSQNSWI-MP--GTIKENII-GV---SYD----EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp EECSSCCC-CS--SBHHHHHH-TT---CCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred EEeCCCcc-Cc--ccHHHHhh-Cc---ccc----hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 99999654 33 49999986 21 111 111222222211 1 12234579999999999999
Q ss_pred hhhccCccEEEEcCcccCCChhhHHHHHHh-h-----c-CceEEEeCHHHHHH--HHh----hccccCCChHHHHH
Q 023126 195 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-F-----D-EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 257 (287)
Q Consensus 195 ~al~~~a~~li~d~~~lllDe~~~~~l~~~-~-----~-~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~ 257 (287)
+|++.+|+++++|||+..||....+.+.+. . . .+|++|||++.+.. +++ |++++.|+++++..
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999999999999666666553 2 1 24689999998754 443 78888899888753
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=2.7e-30 Score=252.81 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=149.3
Q ss_pred CccccCccccccc--ccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNK--TSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++.|+ ...++ +++ +++++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l-----~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~ 411 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVL-----SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVK 411 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSE-----EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBC
T ss_pred CcEEEEEEEEEcCCCCCcce-----eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCC
Confidence 4688999999995 35566 888 9999999999999999999999999999999 99999999997643
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH---------hc----cCCCCCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LR----NQGSVYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~----~~~~~~~~~lSg 185 (287)
+.++|++|++..+ + .|++||+.++ .+.. ..+++.+.++. +. .....+..+|||
T Consensus 412 ~~~~r~~i~~v~Q~~~lf-~--~tv~eni~~~-----~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 412 LKDLRGHISAVPQETVLF-S--GTIKENLKWG-----REDA-TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp HHHHHHHEEEECSSCCCC-S--EEHHHHHTTT-----CSSC-CHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred HHHHHhheEEECCCCcCc-C--ccHHHHHhcc-----CCCC-CHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 3599999997654 3 4999998753 2211 22223333222 21 122456779999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|.+ +++.++++.. ..|++||+++.+.. |++ |++++.|+++
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999983 4444444432 24799999998765 554 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|+.+.
T Consensus 563 el~~~ 567 (587)
T 3qf4_A 563 ELLEH 567 (587)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 98754
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.96 E-value=1.4e-30 Score=255.34 Aligned_cols=192 Identities=13% Similarity=0.089 Sum_probs=148.3
Q ss_pred cccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 52 FGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 52 ~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
++++++++.|+++ .++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 342 i~~~~v~~~y~~~~~~~vl-----~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~ 413 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIF-----QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNP 413 (595)
T ss_dssp EEEEEEEEECSSCTTSEEE-----EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCH
T ss_pred EEEEEEEEEeCCCCCCccc-----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCH
Confidence 8899999999753 456 888 9999999999999999999999999999999 99999999986542
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---------CCC----CCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lSgG 186 (287)
+.++|++|++..+ + .|++||+.++.... ...+.+++.++++.++. +.+ ....+||||
T Consensus 414 ~~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgG 487 (595)
T 2yl4_A 414 VWLRSKIGTVSQEPILF-S--CSIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487 (595)
T ss_dssp HHHHHSEEEECSSCCCC-S--SBHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHH
T ss_pred HHHHhceEEEccCCccc-C--CCHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHH
Confidence 3499999997644 3 59999998642110 11234556666655441 122 234799999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|+|++.+|+++++||++..||. .+++.+.++.+ ..|++||+++.+.. |++ |++++.|++++
T Consensus 488 q~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC
T ss_pred HHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999 34444554433 34699999998865 544 89999999988
Q ss_pred HHH
Q 023126 255 VAK 257 (287)
Q Consensus 255 v~~ 257 (287)
+..
T Consensus 568 l~~ 570 (595)
T 2yl4_A 568 LLS 570 (595)
T ss_dssp ---
T ss_pred HHh
Confidence 764
No 43
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=1.4e-30 Score=255.50 Aligned_cols=192 Identities=13% Similarity=0.139 Sum_probs=147.7
Q ss_pred CccccCcccccccc-cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC----
Q 023126 50 PVFGKTRSLVQNKT-SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~---- 123 (287)
..++++++++.|+. ..++ +++ +++++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 353 ~~i~~~~v~~~y~~~~~~l-----~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~ 424 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVL-----KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKR 424 (598)
T ss_dssp CCEEEEEEECCSSSSSCSC-----CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCH
T ss_pred CeEEEEEEEEECCCCCccc-----cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCH
Confidence 35889999999974 4566 888 9999999999999999999999999999999 99999999986542
Q ss_pred ----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCCcc
Q 023126 124 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHG 186 (287)
Q Consensus 124 ----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lSgG 186 (287)
+.++|++|++..+ + .|++||+.++. +.. ..+++.+.++..+ .+.+ ....+||||
T Consensus 425 ~~~r~~i~~v~Q~~~lf-~--~tv~eni~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgG 495 (598)
T 3qf4_B 425 SSLRSSIGIVLQDTILF-S--TTVKENLKYGN-----PGA-TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQG 495 (598)
T ss_dssp HHHHHHEEEECTTCCCC-S--SBHHHHHHSSS-----TTC-CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHH
T ss_pred HHHHhceEEEeCCCccc-c--ccHHHHHhcCC-----CCC-CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHH
Confidence 3599999997644 3 59999997531 111 1122333333222 1111 123589999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChHH
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 254 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~e 254 (287)
||||+++|+|++.+|+++++||++..+|. .+.+.+.++.. ..|++||+++.+.. |++ |++++.|+++|
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999998 34444444433 34699999999876 554 89999999999
Q ss_pred HHHH
Q 023126 255 VAKW 258 (287)
Q Consensus 255 v~~~ 258 (287)
+...
T Consensus 576 l~~~ 579 (598)
T 3qf4_B 576 LIQK 579 (598)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 8653
No 44
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.96 E-value=1.5e-30 Score=254.34 Aligned_cols=192 Identities=13% Similarity=0.102 Sum_probs=148.5
Q ss_pred CccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC---
Q 023126 50 PVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--- 123 (287)
..++++++++.|++ ..++ +++ +++++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l-----~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~ 409 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPIL-----KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFL 409 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSE-----EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSC
T ss_pred CeEEEEEEEEEcCCCCCcce-----eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCC
Confidence 45889999999974 4566 888 9999999999999999999999999999999 99999999986532
Q ss_pred -----ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cC----CCCCCCCCCc
Q 023126 124 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDH 185 (287)
Q Consensus 124 -----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~lSg 185 (287)
+.++|++|++..+ + .|++||+.++ .+.. ..+++.+.++..+ .+ ......+|||
T Consensus 410 ~~~~r~~i~~v~Q~~~l~-~--~tv~eni~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 410 TGSLRNQIGLVQQDNILF-S--DTVKENILLG-----RPTA-TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp HHHHHHTEEEECSSCCCC-S--SBHHHHHGGG-----CSSC-CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred HHHHhhheEEEeCCCccC-c--ccHHHHHhcC-----CCCC-CHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 3599999997644 3 4999999764 2211 2233444443332 11 1234458999
Q ss_pred ccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCChH
Q 023126 186 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPP 253 (287)
Q Consensus 186 G~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~~ 253 (287)
|||||+++|+|++.+|+++++||++..+|++ +.+.+.++.. ..|++||+++.+.. |++ |++++.|+++
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999983 3344444432 34699999998765 554 8999999999
Q ss_pred HHHHH
Q 023126 254 DVAKW 258 (287)
Q Consensus 254 ev~~~ 258 (287)
|+...
T Consensus 561 el~~~ 565 (578)
T 4a82_A 561 ELIAK 565 (578)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 98653
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=3.6e-29 Score=244.99 Aligned_cols=190 Identities=15% Similarity=0.126 Sum_probs=148.2
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++. .+ +.+ +.+++||++||+||||||||||+|+|+|+++ |++|+|.+. ..+
T Consensus 354 ~~~~l~~~~l~~~~~~~-~l-----~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-----~~i 419 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGSF-KL-----EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-----LTV 419 (607)
T ss_dssp CCEEEEECCEEEECSSC-EE-----EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-----CCE
T ss_pred CceEEEEeceEEEecce-EE-----EecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-----eEE
Confidence 45688999999999763 23 555 8899999999999999999999999999999 999999862 349
Q ss_pred EEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+....+ .+|+.+++... ...+ ...+++.++++.++ ...++++.+||||||||++||++++.+|++
T Consensus 420 ~~v~Q~~~~~~--~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 420 AYKPQYIKAEY--EGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp EEECSSCCCCC--SSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEEecCccCCC--CCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999965433 47898877653 1111 12345667777777 445678889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh------hccccCCChHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~------gr~v~~G~~~ev~~~ 258 (287)
|++|||+..||. .+++.|+++.. ..|++|||++++.. |++ |++.+.|+++++...
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 999999999999 34555555532 24699999999876 544 344567999887653
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=3.6e-29 Score=242.29 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=147.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++. .+ +.+ +.+++||++||+||||||||||+|+|+|+++ |++|+|.+. ..+
T Consensus 284 ~~~~l~~~~l~~~~~~~-~l-----~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~-----~~i 349 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGSF-RL-----EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEWD-----LTV 349 (538)
T ss_dssp CCEEEEECCEEEEETTE-EE-----EECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCCC-----CCE
T ss_pred CCeEEEEeeEEEEECCE-EE-----EeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEC-----ceE
Confidence 45789999999988763 23 555 8899999999999999999999999999999 999999862 349
Q ss_pred EEEeCCCCCCCcccCCccccHHHH-HHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~-~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
+|++|+.... ..+|+.+++... ...+ ...+.+.++++.++ ...++++.+||||||||++||++++.+|++
T Consensus 350 ~~v~Q~~~~~--~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 350 AYKPQYIKAD--YEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp EEECSSCCCC--CSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEEecCCcCC--CCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 9999996543 347887776543 1111 12345667777776 455778889999999999999999999999
Q ss_pred EEEcCcccCCCh----hhHHHHHHhh---c-CceEEEeCHHHHHH---HHh------hccccCCChHHHHHH
Q 023126 204 VIVDGNYLFLDG----GVWKDVSSMF---D-EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 204 li~d~~~lllDe----~~~~~l~~~~---~-~~i~vtHd~~~~~~---rv~------gr~v~~G~~~ev~~~ 258 (287)
|++|||+..||. .+++.++++. . .+|++|||++++.. |++ |++++.|+++++...
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 999999999998 3455555543 2 34699999999886 444 345567999887653
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=3e-28 Score=235.55 Aligned_cols=175 Identities=17% Similarity=0.148 Sum_probs=137.1
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCcee
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 126 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i 126 (287)
..++++++++++.|++.. + ... +.+++||++||+||||||||||+++|+|+++ |++|+|.+++. .+
T Consensus 266 ~~~~l~~~~l~~~~~~~~-l-----~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----~i 332 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGDFQ-L-----VVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQ----IL 332 (538)
T ss_dssp CCEEEEECCEEEEETTEE-E-----EECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCC----CE
T ss_pred ccceEEEcceEEEECCEE-E-----EeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCe----ee
Confidence 456888999999988632 2 333 7899999999999999999999999999999 99999987653 48
Q ss_pred EEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEE
Q 023126 127 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVV 204 (287)
Q Consensus 127 ~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~l 204 (287)
+|++|+....+ .+|+.+|+...... . .......+.++++.++ ...++++.+|||||||||+||+|++.+|++|
T Consensus 333 ~~~~q~~~~~~--~~tv~~~l~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lL 407 (538)
T 3ozx_A 333 SYKPQRIFPNY--DGTVQQYLENASKD--A-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLY 407 (538)
T ss_dssp EEECSSCCCCC--SSBHHHHHHHHCSS--T-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred Eeechhccccc--CCCHHHHHHHhhhh--c-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999865433 37899988763211 1 1112334566666666 4567888999999999999999999999999
Q ss_pred EEcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH
Q 023126 205 IVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 240 (287)
Q Consensus 205 i~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~ 240 (287)
++|||+..||. .+++.++++.+ .+|+||||++++..
T Consensus 408 lLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 408 VLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99999999998 45555665542 24699999999876
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.94 E-value=7.3e-29 Score=261.51 Aligned_cols=194 Identities=14% Similarity=0.084 Sum_probs=154.5
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.-+++++++++|.++ .++ +++ ++|++||.+||+|+||||||||+++|.|+++ |++|+|.++|.+.+
T Consensus 1075 g~I~f~nVsf~Y~~~~~~~VL-----~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i 1146 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPERPEIEIL-----KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTL 1146 (1321)
T ss_dssp CCEEEEEEEECCTTSCSSCSE-----EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTB
T ss_pred CeEEEEEEEEeCCCCCCCccc-----cceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhC
Confidence 358899999999654 466 888 9999999999999999999999999999999 99999999997653
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCCCCC----CCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~lS 184 (287)
..++++|||++.+. -|+++|+.++.. +.....+.+.++++..+ .+.+..+ ..||
T Consensus 1147 ~~~~lR~~i~~V~Qdp~LF~---gTIreNI~~gld----~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS 1219 (1321)
T 4f4c_A 1147 NPEHTRSQIAIVSQEPTLFD---CSIAENIIYGLD----PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLS 1219 (1321)
T ss_dssp CHHHHHTTEEEECSSCCCCS---EEHHHHHSSSSC----TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSC
T ss_pred CHHHHHhheEEECCCCEeeC---ccHHHHHhccCC----CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccC
Confidence 45999999987654 499999875321 22334455556555443 2334333 4799
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.++++|++||++.-+|.+ +++.+++.+. ++|+|+|.++.+.. |++ ||+++.|++
T Consensus 1220 gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1220 GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999984 4444544443 24799999999877 665 999999999
Q ss_pred HHHHHH
Q 023126 253 PDVAKW 258 (287)
Q Consensus 253 ~ev~~~ 258 (287)
+|+++.
T Consensus 1300 ~eLl~~ 1305 (1321)
T 4f4c_A 1300 TQLMSE 1305 (1321)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998863
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.94 E-value=3e-28 Score=256.32 Aligned_cols=193 Identities=13% Similarity=0.097 Sum_probs=148.5
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
..++++++++.|+.+ .++ +++ +.+++||++||+||||||||||+++|.|+++ |++|+|.++|.+..
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l-----~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~ 1100 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVL-----QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQL 1100 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSB-----SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSS
T ss_pred CcEEEEEEEEECCCCCCCeee-----cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccC
Confidence 458899999999754 355 888 9999999999999999999999999999999 99999999997643
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc---------cCCC----CCCCCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lS 184 (287)
..++|++|++..+ . .|+++|+.++... .....+.+.+.++..+ .+.+ .....||
T Consensus 1101 ~~~~~r~~i~~v~Q~~~l~-~--~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LS 1173 (1284)
T 3g5u_A 1101 NVQWLRAQLGIVSQEPILF-D--CSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLS 1173 (1284)
T ss_dssp CHHHHTTSCEEEESSCCCC-S--SBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSC
T ss_pred CHHHHHhceEEECCCCccc-c--ccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccC
Confidence 4599999998543 3 6999998753211 1122333333333322 1112 2345899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.+|++|++||++..+|.+ +++.+++... .+|+||||++++.. |++ |++++.|++
T Consensus 1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1174 GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTH 1253 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999983 4444444433 34799999999865 555 899999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 1254 ~~l~~ 1258 (1284)
T 3g5u_A 1254 QQLLA 1258 (1284)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
No 50
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-26 Score=226.92 Aligned_cols=185 Identities=17% Similarity=0.193 Sum_probs=139.0
Q ss_pred Cccccccccc-chhhhhhcCcc-ceecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeE
Q 023126 55 TRSLVQNKTS-LKVLCSQRREI-PVVEAR-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 127 (287)
Q Consensus 55 ~~~~~~~~~~-~~~v~~~~~~~-~~i~~G-----eivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~ 127 (287)
.++.+.|... ..+ +++ +.+.+| |++||+||||||||||+++|+|+++ |++|+.. ....++
T Consensus 350 ~~~~~~y~~~~~~l-----~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~-----~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKTQ-----GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDI-----PKLNVS 416 (608)
T ss_dssp SSSCCEECCEEEEC-----SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCC-----CSCCEE
T ss_pred cceeEEecCccccc-----CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCc-----cCCcEE
Confidence 4555666542 233 666 888877 7899999999999999999999999 9999742 123489
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEE
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li 205 (287)
|++|+....+. .|+.+++... ..+ .......+.++++.++ ...++++.+|||||||||+||+|++.+|++|+
T Consensus 417 ~~~q~~~~~~~--~tv~e~~~~~--~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLl 490 (608)
T 3j16_B 417 MKPQKIAPKFP--GTVRQLFFKK--IRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYL 490 (608)
T ss_dssp EECSSCCCCCC--SBHHHHHHHH--CSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EecccccccCC--ccHHHHHHHH--hhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99998554333 5787765421 111 1123345567777777 45678899999999999999999999999999
Q ss_pred EcCcccCCCh----hhHHHHHHhhc----CceEEEeCHHHHHH---HHh------hccccCCChHHHHHH
Q 023126 206 VDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 258 (287)
Q Consensus 206 ~d~~~lllDe----~~~~~l~~~~~----~~i~vtHd~~~~~~---rv~------gr~v~~G~~~ev~~~ 258 (287)
+|||+..||. .+++.++++.. ..+++|||++++.. |++ |++++.|+|+++...
T Consensus 491 LDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 491 IDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999998 45555655532 34699999999987 554 577889999998765
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.93 E-value=2.6e-27 Score=249.19 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=147.9
Q ss_pred CccccCccccccccc---chhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKTS---LKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
..++++++++.|+.+ .++ +++ +++++|+++||+||||||||||+++|.|+++ |++|+|.++|.+..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL-----~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~ 457 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQIL-----KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTI 457 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSE-----EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGS
T ss_pred CeEEEEEEEEEcCCCCCCcce-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhC
Confidence 358899999999753 466 888 9999999999999999999999999999999 99999999986532
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHH---------HHHhccC----CCCCCCCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQ----GSVYAPSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~----~~~~~~~lS 184 (287)
..++|++|++..+. .|++||+.++... ...+.+.+. ++.+..+ .......||
T Consensus 458 ~~~~~r~~i~~v~Q~~~l~~---~ti~eNi~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 528 (1284)
T 3g5u_A 458 NVRYLREIIGVVSQEPVLFA---TTIAENIRYGRED------VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528 (1284)
T ss_dssp CHHHHHHHEEEECSSCCCCS---SCHHHHHHHHCSS------CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSC
T ss_pred CHHHHHhheEEEcCCCccCC---ccHHHHHhcCCCC------CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccC
Confidence 34999999986443 4999999876321 112222222 2233222 234556899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChhhH----HHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~----~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|++.+|++|++||++.-||.+.. +.++.... .+|+|||+++.+.. +++ |++++.|++
T Consensus 529 gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNH 608 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999998433 33333332 35799999999876 554 899999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+++..
T Consensus 609 ~~l~~ 613 (1284)
T 3g5u_A 609 DELMR 613 (1284)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99765
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.93 E-value=2.1e-27 Score=250.44 Aligned_cols=191 Identities=15% Similarity=0.110 Sum_probs=151.1
Q ss_pred CccccCcccccccc---cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--
Q 023126 50 PVFGKTRSLVQNKT---SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-- 123 (287)
Q Consensus 50 ~~~~~~~~~~~~~~---~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~-- 123 (287)
.-++++++++.|.. ..++ +++ +.+++|+.++|+||||||||||+++|.|+++ |++|+|.++|.+.+
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL-----~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~ 485 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPIL-----RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDI 485 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSE-----EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTS
T ss_pred CcEEEEEeeeeCCCCCCCcee-----eceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhc
Confidence 35788999999964 4566 888 9999999999999999999999999999999 99999999997654
Q ss_pred ------ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHH---------hccCCCC----CCCCCC
Q 023126 124 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSV----YAPSFD 184 (287)
Q Consensus 124 ------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~----~~~~lS 184 (287)
..++|++|+++.+. -|++||+.++ .+. .+.+++.++++. +.++.+. .-..||
T Consensus 486 ~~~~lr~~i~~v~Q~~~Lf~---~TI~eNI~~g-----~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LS 556 (1321)
T 4f4c_A 486 NLEFLRKNVAVVSQEPALFN---CTIEENISLG-----KEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLS 556 (1321)
T ss_dssp CHHHHHHHEEEECSSCCCCS---EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCC
T ss_pred cHHHHhhcccccCCcceeeC---CchhHHHhhh-----ccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCC
Confidence 35999999987554 5999999864 222 233444444433 3333333 334899
Q ss_pred cccCCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHHHH--HHh----hccccCCCh
Q 023126 185 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKP 252 (287)
Q Consensus 185 gG~~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~~~--rv~----gr~v~~G~~ 252 (287)
||||||++||+|+..+|+++++|+++..+|.+ +.+.+.++.+ ++|+|+|.+..+.. +++ |++++.|+.
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth 636 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDH 636 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCH
Confidence 99999999999999999999999999999983 4444555443 35799999998877 555 999999999
Q ss_pred HHHHH
Q 023126 253 PDVAK 257 (287)
Q Consensus 253 ~ev~~ 257 (287)
+|++.
T Consensus 637 ~eL~~ 641 (1321)
T 4f4c_A 637 RALMA 641 (1321)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99764
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=3.6e-27 Score=239.30 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=137.3
Q ss_pred CCCccccCcccccccc--cchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc
Q 023126 48 AQPVFGKTRSLVQNKT--SLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 124 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~ 124 (287)
..++++++++++.|++ +.++ +++ +.+.+|+++||+||||||||||+|+|+|+++ |++|+|.+++..
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL-----~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~--- 736 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQI-----TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC--- 736 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSE-----EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---
T ss_pred CCceEEEEeeEEEeCCCCceee-----eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---
Confidence 4568999999999975 4566 888 9999999999999999999999999999999 999999987642
Q ss_pred eeEEEeCCCCCCC--cccCC------------------------------------------------------------
Q 023126 125 VATVLPMDGFHLY--LSQLD------------------------------------------------------------ 142 (287)
Q Consensus 125 ~i~~v~qd~~~~~--~~~lt------------------------------------------------------------ 142 (287)
.++|++|+.+... ....|
T Consensus 737 ~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~ 816 (986)
T 2iw3_A 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYE 816 (986)
T ss_dssp CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEE
T ss_pred ceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccch
Confidence 3888888642100 00001
Q ss_pred ------ccccHHHHH-----------------------------------HhcCCCCCchHHHHHHHHHHhccC----CC
Q 023126 143 ------AMEDPKEAH-----------------------------------ARRGAPWTFNPLLLLNCLKNLRNQ----GS 177 (287)
Q Consensus 143 ------v~e~i~~~~-----------------------------------~~~~~~~~~~~~~~~~~l~~l~~~----~~ 177 (287)
+.+|+.+.. ...+.......+++.+.|+.++.. .+
T Consensus 817 ~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 817 YECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred hhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcC
Confidence 111111100 001111222345677888888743 35
Q ss_pred CCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh----cCceEEEeCHHHHHH---HHh----hcc
Q 023126 178 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQ---RVL----KRH 246 (287)
Q Consensus 178 ~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~----~~~i~vtHd~~~~~~---rv~----gr~ 246 (287)
.++.+||||||||++||++++.+|++|++|||+..||......+.+.. ..+|++|||++++.. |++ |++
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~I 976 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRM 976 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBC
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 678899999999999999999999999999999999995444444433 235799999999865 433 666
Q ss_pred ccCC
Q 023126 247 ISTG 250 (287)
Q Consensus 247 v~~G 250 (287)
+..|
T Consensus 977 v~~G 980 (986)
T 2iw3_A 977 TPSG 980 (986)
T ss_dssp CC--
T ss_pred EEeC
Confidence 6655
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.92 E-value=4.3e-26 Score=223.23 Aligned_cols=169 Identities=17% Similarity=0.090 Sum_probs=124.2
Q ss_pred Ccccccccccc-hhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc---------ccCCCCC--
Q 023126 55 TRSLVQNKTSL-KVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQVKP-- 122 (287)
Q Consensus 55 ~~~~~~~~~~~-~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i---------~~~~~~~-- 122 (287)
++++++|+... ++ +++-.+++||++||+||||||||||+|+|+|+++ |++|++ .+.|...
T Consensus 95 ~~ls~~yg~~~~~l-----~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~~~~~~~G~~~~~ 166 (607)
T 3bk7_A 95 EDCVHRYGVNAFVL-----YRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDNVIRAFRGNELQN 166 (607)
T ss_dssp GSEEEECSTTCCEE-----ECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHHHHHHTTTSTHHH
T ss_pred CCeEEEECCCCeee-----CCCCCCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccchhhheeCCEehhh
Confidence 78899998652 34 4443689999999999999999999999999999 999996 3444321
Q ss_pred --------CceeEEEeCCCCCCCcc-cCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 123 --------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 123 --------~~~i~~v~qd~~~~~~~-~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
...+++++|.....+.. ..++.+++.. . ...+++.++++.++ ...++++.+|||||+||+
T Consensus 167 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~-----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----V-----DEVGKFEEVVKELELENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----T-----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHH
T ss_pred hhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----h-----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHH
Confidence 12367777763221110 1256665532 1 11234567777777 345778889999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
+||+|++.+|++|++|||+..||.. +++.|+++.. .+|++|||++++..
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 9999999999999999999999983 5555555533 24699999998765
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.92 E-value=9.1e-26 Score=218.47 Aligned_cols=172 Identities=17% Similarity=0.098 Sum_probs=123.6
Q ss_pred ccc-Ccccccccccc-hhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc---------ccCCC
Q 023126 52 FGK-TRSLVQNKTSL-KVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQV 120 (287)
Q Consensus 52 ~~~-~~~~~~~~~~~-~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i---------~~~~~ 120 (287)
.++ +++++.|+... ++ +++-.+++||++||+||||||||||+|+|+|+++ |++|++ .+.|.
T Consensus 21 ~~~~~~ls~~yg~~~~~l-----~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~ 92 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVL-----YRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGN 92 (538)
T ss_dssp ---CCCEEEECSTTCCEE-----ECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTS
T ss_pred hhHhcCcEEEECCccccc-----cCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCc
Confidence 344 58999998752 33 4433689999999999999999999999999999 999995 34443
Q ss_pred CC----------CceeEEEeCCCCCCCcc-cCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCccc
Q 023126 121 KP----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGV 187 (287)
Q Consensus 121 ~~----------~~~i~~v~qd~~~~~~~-~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~ 187 (287)
.. ...+++++|.....+.. ..++.+++.. .. ..+++.++++.++ ...++++.+|||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 93 ELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGE 163 (538)
T ss_dssp THHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred cHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence 21 12367777763322210 0245454431 11 1234567777777 44567888999999
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHHHH
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 240 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~~~ 240 (287)
|||++||+|++.+|++|++|||+..||.. +++.|+++.. .+|++|||++++..
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999984 5555555543 24699999998865
No 56
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.92 E-value=7.3e-25 Score=191.73 Aligned_cols=195 Identities=21% Similarity=0.338 Sum_probs=130.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|+++||+||||||||||+++|+|++. .+.++ .....+++++|+.++ . .+++.+++.+..
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~v~~d~~~--~-~l~~~~~~~~~~ 83 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVILSQDRFY--K-VLTAEQKAKALK 83 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEEEEGGGGB--C-CCCHHHHHHHHT
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEEEeCCcCc--c-ccCHhHhhhhhc
Confidence 888 9999999999999999999999999999874 33332 123458899999632 2 378877776544
Q ss_pred HhcCC--CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCce
Q 023126 152 ARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 229 (287)
Q Consensus 152 ~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i 229 (287)
..+.. +...+.+.+.+.|+.+......+++.||+||+||+++ .+++.+++++++|++.++.++ .+.++.+.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~~~~i 158 (245)
T 2jeo_A 84 GQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMFHLRL 158 (245)
T ss_dssp TCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTCSEEE
T ss_pred cCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhcCeEE
Confidence 33332 2334566677777777767778889999999999988 467778899999998887774 3455566666
Q ss_pred EEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchH-HHHhhcCCCccEEecc
Q 023126 230 FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNA-ELIMKSKKNADLVIKS 284 (287)
Q Consensus 230 ~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~-~~i~~~~~~aD~i~~~ 284 (287)
+++.+.+....|.+.|.+..|...+.+...+.....+.. +++.|.+..||+|+++
T Consensus 159 ~v~th~~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 159 FVDTDSDVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp EEECCHHHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred EEECCHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 554443444444454434667666655555554444554 4999999999999954
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.7e-25 Score=213.81 Aligned_cols=174 Identities=16% Similarity=0.084 Sum_probs=116.7
Q ss_pred cccccccccc-hhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc-----------cCCCCCC
Q 023126 56 RSLVQNKTSL-KVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP 123 (287)
Q Consensus 56 ~~~~~~~~~~-~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~-----------~~~~~~~ 123 (287)
+++++|+... .+ .++..+++|+++||+||||||||||+|+|+|+++ |++|++. +.|....
T Consensus 82 ~~~~~Y~~~~~~l-----~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKL-----HRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEE-----ECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHH
T ss_pred CeEEEECCCceee-----cCCCCCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhh
Confidence 5677776432 23 4445689999999999999999999999999999 9999982 3222110
Q ss_pred --------ce--eEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 124 --------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 124 --------~~--i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
.. ..+.+|.....+ .....+................+++.++++.++ ...++++.+|||||+||+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv 230 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRF 230 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHH---HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHH
T ss_pred hhhhHHHHHhhhhhhchhhhhhhh---hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHH
Confidence 00 112222111000 011111101111111111234467788888887 456788999999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhcC---ceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~~---~i~vtHd~~~~~~ 240 (287)
+||+|++.+|++|++|||+..||. .+++.++++... .|++|||++++..
T Consensus 231 ~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999998 355566665443 4699999999876
No 58
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.90 E-value=1.1e-24 Score=185.95 Aligned_cols=182 Identities=32% Similarity=0.458 Sum_probs=138.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.++|+++||+||||||||||+++|+|+++ |+ | ..++++++|++++.. +..+++... ...+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g----------~~~g~v~~d~~~~~~---~~~~~~~~~-~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G----------LPAEVVPMDGFHLDN---RLLEPRGLL-PRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T----------CCEEEEESGGGBCCH---HHHGGGTCG-GGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C----------CceEEEecCCCcCCH---HHHHHhccc-ccCCCC
Confidence 57899999999999999999999999998 65 4 127889999875542 111222100 112344
Q ss_pred CCchHHHHHHHHHHhccCCC------CCCCCCCcccCCchhhhhhhccCc-cEEEEcCcccCCChhhHHHHHHhhcCceE
Q 023126 158 WTFNPLLLLNCLKNLRNQGS------VYAPSFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEKWF 230 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~------~~~~~lSgG~~qrv~ia~al~~~a-~~li~d~~~lllDe~~~~~l~~~~~~~i~ 230 (287)
...+...+.+.+..+....+ .....+|+||+|+++. + ++++.|++++++||..|..+.+.++..++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~-------~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP-------ECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT-------TCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC-------CCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 45566666666666653322 1223568999999988 6 99999999999999888888888999999
Q ss_pred EEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEEecc
Q 023126 231 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 284 (287)
Q Consensus 231 vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~ 284 (287)
++++.+...+|++.|....|.+.+.+.+++..+..++++|+.|.+.+||+|+++
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 999999988888888777787777777777766778889999999999999985
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.90 E-value=1.4e-24 Score=220.36 Aligned_cols=181 Identities=13% Similarity=0.048 Sum_probs=135.2
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC--CCceeEE
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--PPDVATV 128 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~--~~~~i~~ 128 (287)
+...++++.|+++.++ +++ +++++|+++||+||||||||||+|+|+| |++ .|.. ....++|
T Consensus 436 L~~~~ls~~yg~~~iL-----~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~~~~~~~ 499 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILL-----NKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQEECRTVY 499 (986)
T ss_dssp EEEEEEEEEETTEEEE-----EEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTTTSCEEE
T ss_pred eEEeeEEEEECCEEeE-----ecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccccceeEEE
Confidence 4444899999988877 898 9999999999999999999999999996 111 1111 1113678
Q ss_pred EeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCccEEE
Q 023126 129 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 205 (287)
Q Consensus 129 v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~~li 205 (287)
++|+....+ +.+|+.+|+.+ ...+ . .+++.+.++.++. ..++++.+||||||||++||++++.+|++|+
T Consensus 500 v~q~~~~~~-~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 500 VEHDIDGTH-SDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp TTCCCCCCC-TTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred Ecccccccc-cCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 877642222 34788888864 1111 1 5677888888874 3467888999999999999999999999999
Q ss_pred EcCcccCCChh----hHHHHHHhhcC-ceEEEeCHHHHHH---HHh----hccc-cCCChHHHHH
Q 023126 206 VDGNYLFLDGG----VWKDVSSMFDE-KWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 257 (287)
Q Consensus 206 ~d~~~lllDe~----~~~~l~~~~~~-~i~vtHd~~~~~~---rv~----gr~v-~~G~~~ev~~ 257 (287)
+|||+..||.. +++.|.+ ... .|++|||++++.. |++ |+++ ..|+++++..
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999994 4444444 222 4699999999876 444 7776 5788888754
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.90 E-value=2.7e-24 Score=213.46 Aligned_cols=182 Identities=18% Similarity=0.131 Sum_probs=106.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHH---------------------HHHHHHhcccCCCCccc-------ccCCCCC-
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKASS-------FDSQVKP- 122 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLl---------------------k~L~G~l~~~~p~~G~i-------~~~~~~~- 122 (287)
+++ ++|++|+++||+||||||||||+ +++.|+.. |+.|.+ .+++...
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC--
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCchhh
Confidence 888 99999999999999999999998 88888888 885543 3333221
Q ss_pred ---CceeEEEeCCCCC-----------------CCcccCCccccHHHHHHhc--CCCCCch------HHHHHHHHHHhcc
Q 023126 123 ---PDVATVLPMDGFH-----------------LYLSQLDAMEDPKEAHARR--GAPWTFN------PLLLLNCLKNLRN 174 (287)
Q Consensus 123 ---~~~i~~v~qd~~~-----------------~~~~~ltv~e~i~~~~~~~--~~~~~~~------~~~~~~~l~~l~~ 174 (287)
...+++++|.... .....+|+.+|+.+..... ....... .....+.++.++.
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gL 191 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGL 191 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTTC
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 1223444443211 1112478899987642211 0000000 0111234666663
Q ss_pred C---CCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--
Q 023126 175 Q---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ-- 240 (287)
Q Consensus 175 ~---~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~-- 240 (287)
. .++++.+||||||||++||+|++.+|+ +|++|||+..||+ .+++.++++.+ .+|+||||++++..
T Consensus 192 ~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d 271 (670)
T 3ux8_A 192 DYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAAD 271 (670)
T ss_dssp TTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCS
T ss_pred chhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 2 467888999999999999999999888 9999999999998 34444554432 34799999998655
Q ss_pred HHh----------hccccCCChHHHHH
Q 023126 241 RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 241 rv~----------gr~v~~G~~~ev~~ 257 (287)
|++ |++++.|+++++..
T Consensus 272 ~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 272 YLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp EEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred EEEEecccccccCCEEEEecCHHHHhc
Confidence 332 57778888888653
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=9.1e-24 Score=204.23 Aligned_cols=167 Identities=15% Similarity=0.002 Sum_probs=113.2
Q ss_pred ccccccc-cchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc-----------ccCCCCCC-
Q 023126 57 SLVQNKT-SLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKPP- 123 (287)
Q Consensus 57 ~~~~~~~-~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i-----------~~~~~~~~- 123 (287)
.+.+||. .+.+ -++..+++||++||+||||||||||+|+|+|+++ |++|++ .+.|....
T Consensus 5 ~~~~~~~~~f~l-----~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i~~ 76 (538)
T 3ozx_A 5 VIHRYKVNGFKL-----FGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEIYN 76 (538)
T ss_dssp EEEESSTTSCEE-----ECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTTHH
T ss_pred CceecCCCceee-----cCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeHHH
Confidence 4556663 2333 3346688999999999999999999999999999 999998 34443321
Q ss_pred ---------ceeEEEeCCCCCCCc-ccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCch
Q 023126 124 ---------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPV 191 (287)
Q Consensus 124 ---------~~i~~v~qd~~~~~~-~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv 191 (287)
..+....|.....+. ...++.+++. ... ..+++.++++.++ ...++++.+|||||+||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv 147 (538)
T 3ozx_A 77 YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT----KID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRL 147 (538)
T ss_dssp HHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHH----HHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred HHHHHhhcccchhhccchhhhhhhhccCcHHHHhh----cch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence 112222322111110 0013333221 111 1223456666666 456788899999999999
Q ss_pred hhhhhhccCccEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 192 EDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 192 ~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
+||+|++.+|++|++|||+..||. .+++.++++.+ .+|++|||++++..
T Consensus 148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 999999999999999999999998 34555555533 24699999998876
No 62
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.8e-26 Score=216.19 Aligned_cols=177 Identities=13% Similarity=-0.008 Sum_probs=125.1
Q ss_pred hhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-c-cccCCCCCCceeEEEeCCCCCC-CcccCCccc
Q 023126 70 SQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQVKPPDVATVLPMDGFHL-YLSQLDAME 145 (287)
Q Consensus 70 ~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G-~-i~~~~~~~~~~i~~v~qd~~~~-~~~~ltv~e 145 (287)
+.++++ +.+++|++++|+||||||||||+|+|+|++. |++| + |++++. .++.+++++|+...+ ..+.+++.+
T Consensus 126 ~~y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 126 FMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred ehhhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-ccCCeeeeccchhhcccccccchhh
Confidence 333456 8899999999999999999999999999999 9999 8 988874 355688999985321 122368888
Q ss_pred cHHHHHHh-cCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhh--hccCccE----EEEcC-cccCCChhh
Q 023126 146 DPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHKV----VIVDG-NYLFLDGGV 217 (287)
Q Consensus 146 ~i~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~a--l~~~a~~----li~d~-~~lllDe~~ 217 (287)
|+ ++... .+. ...+++.++++.++......+.+|||||+||+++|++ ++.++++ |++|+ ++..+|..
T Consensus 202 ni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~- 276 (460)
T 2npi_A 202 PT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN- 276 (460)
T ss_dssp TT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-
T ss_pred hh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-
Confidence 87 43221 111 1112233444445532222367999999999999999 9999999 99999 99999985
Q ss_pred HHHHHHhh----cCceEEEeCHH------HHHH---H-----Hh-----hccccCCChHHHH
Q 023126 218 WKDVSSMF----DEKWFIEVDLD------TAMQ---R-----VL-----KRHISTGKPPDVA 256 (287)
Q Consensus 218 ~~~l~~~~----~~~i~vtHd~~------~~~~---r-----v~-----gr~v~~G~~~ev~ 256 (287)
.+.+.++. ...++++||.+ ++.. | ++ |+++ .|+++++.
T Consensus 277 ~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 277 LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 33333332 34579999987 4433 5 44 5777 78877653
No 63
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.87 E-value=6.4e-22 Score=168.48 Aligned_cols=178 Identities=24% Similarity=0.340 Sum_probs=131.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.++|+++||+||||||||||+++|+|++. | .+++++||+++.....+++.++..+ .++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--------------~i~~v~~d~~~~~~~~~~~~~~~~~---~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--------------RVALLPMDHYYKDLGHLPLEERLRV---NYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--------------GEEEEEGGGCBCCCTTSCHHHHHHS---CTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--------------CeEEEecCccccCcccccHHHhcCC---CCCCh
Confidence 46899999999999999999999999987 5 2789999987654444666555332 22334
Q ss_pred CCchHHHHHHHHHHhccC--CCCCCCCCCcccC----CchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEE
Q 023126 158 WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 231 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~--~~~~~~~lSgG~~----qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~v 231 (287)
...+.+++.+.++.++.. ...+...+|+|++ ||+++ +++++.||+++++||. ...+++.++++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~-------~~~li~~~~ll~~de~----~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRP-------APVVILEGILVLYPKE----LRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECC-------CSEEEEESTTTTSSHH----HHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCC-------CcEEEEeehhhccCHH----HHHhcCEEEEE
Confidence 455667777777777633 3345668999974 56666 8999999999999964 44566788999
Q ss_pred EeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEeccCC
Q 023126 232 EVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 286 (287)
Q Consensus 232 tHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 286 (287)
+.+.+....|.+.|.. ..|.+...+.+.+.....+.+. |+.|.+.+||+|+++..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 9999987777765543 5576666655555555566666 89999999999998753
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.86 E-value=4.2e-23 Score=176.60 Aligned_cols=144 Identities=17% Similarity=0.076 Sum_probs=91.0
Q ss_pred cccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-----CCCCCceeEEEeCCCC
Q 023126 60 QNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-----QVKPPDVATVLPMDGF 134 (287)
Q Consensus 60 ~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-----~~~~~~~i~~v~qd~~ 134 (287)
.|+.+.++ ++ +++|++++|+||||||||||+++|+|+ + |++|+|... .......++|++|++
T Consensus 9 ~~g~~~~l-----~~---i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~- 75 (208)
T 3b85_A 9 TLGQKHYV-----DA---IDTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL- 75 (208)
T ss_dssp SHHHHHHH-----HH---HHHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC---
T ss_pred CHhHHHHH-----Hh---ccCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH-
Confidence 44555555 44 489999999999999999999999999 8 999998531 011234588888874
Q ss_pred CCCcccCCccccH-HHH----HHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCc
Q 023126 135 HLYLSQLDAMEDP-KEA----HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 209 (287)
Q Consensus 135 ~~~~~~ltv~e~i-~~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~ 209 (287)
.+|+ .+. ...... ...+++.++++. + .||+||+++|++++.+|++|++|||
T Consensus 76 ---------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-g-----------lGq~qrv~lAraL~~~p~lllLDEP 131 (208)
T 3b85_A 76 ---------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-G-----------IVEVAPLAYMRGRTLNDAFVILDEA 131 (208)
T ss_dssp -------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-T-----------SEEEEEGGGGTTCCBCSEEEEECSG
T ss_pred ---------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-C-----------CchHHHHHHHHHHhcCCCEEEEeCC
Confidence 1222 111 111111 122345555543 1 1999999999999999999999999
Q ss_pred ccCCChhhHHHHHHhh-cCceEEEeCHHHHHH
Q 023126 210 YLFLDGGVWKDVSSMF-DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 210 ~lllDe~~~~~l~~~~-~~~i~vtHd~~~~~~ 240 (287)
+...-+.+++.+.++. ..++++|||++.+..
T Consensus 132 ts~~~~~l~~~l~~l~~g~tiivtHd~~~~~~ 163 (208)
T 3b85_A 132 QNTTPAQMKMFLTRLGFGSKMVVTGDITQVDL 163 (208)
T ss_dssp GGCCHHHHHHHHTTBCTTCEEEEEEC------
T ss_pred ccccHHHHHHHHHHhcCCCEEEEECCHHHHhC
Confidence 9982225556666651 123459999998765
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.85 E-value=2.1e-22 Score=199.79 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
.++..+.+..++. ..++++.+||||||||++||+|++.+| ++|++|||+..||+ .+++.++++.+ .+
T Consensus 520 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tv 599 (670)
T 3ux8_A 520 IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTV 599 (670)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 3455666777764 246778899999999999999998765 69999999999998 44555555543 24
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVA 256 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~ 256 (287)
|+||||++++.. |++ |++++.|+++++.
T Consensus 600 i~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 600 LVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 699999998754 432 6888999999874
No 66
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.81 E-value=4.9e-21 Score=173.67 Aligned_cols=187 Identities=24% Similarity=0.370 Sum_probs=139.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 162 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~ 162 (287)
++||+||||||||||+++|.+++.. +|++| .++++++|+++.....+. ++ .....++.+...+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~-----------~v~~i~~D~f~~~~~~l~--~~--~~~~~~g~P~~~D~ 157 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR-WPDHP-----------NVEVITTDGFLYSNAKLE--KQ--GLMKRKGFPESYDM 157 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT-STTCC-----------CEEEEEGGGGBCCHHHHH--HT--TCGGGTTSGGGBCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc-cCCCC-----------eEEEEeecccccchhhhh--hH--HHHhhccCcccccH
Confidence 9999999999999999999999861 12333 277899998865542211 10 01123567778888
Q ss_pred HHHHHHHHHhccCC-CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh------hHHHHHHhhcCceEEEeCH
Q 023126 163 LLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 163 ~~~~~~l~~l~~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~------~~~~l~~~~~~~i~vtHd~ 235 (287)
+.+.+.+..+..+. ....|.||.+..+|+..+...+.+++++|+|+.+++.++. -|..+.++++..|||+.+.
T Consensus 158 ~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~ 237 (321)
T 3tqc_A 158 PSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQA 237 (321)
T ss_dssp HHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCH
T ss_pred HHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCH
Confidence 99999998888666 6778899999999987655667789999999999999862 2234778889999999999
Q ss_pred HHHHHHHhhcccc----------C------CChHH----HHHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 236 DTAMQRVLKRHIS----------T------GKPPD----VAKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 236 ~~~~~rv~gr~v~----------~------G~~~e----v~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
+....|++.|... . +.+.+ .+...|.....|+.+ ||+|++.+||+|+++-
T Consensus 238 d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 238 QVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp HHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred HHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecC
Confidence 9999877744321 1 33332 234556677788887 9999999999999864
No 67
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.81 E-value=3.7e-20 Score=187.64 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCc---cEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a---~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
..+..+.|+.++. ..++++.+|||||+||++||++++.++ +++|+|||+..||. .+++.|.++.+ .+
T Consensus 782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TV 861 (916)
T 3pih_A 782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTV 861 (916)
T ss_dssp HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEE
Confidence 3456677888874 346788899999999999999998754 79999999999998 44455555543 34
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|+||||++++.. |++ |++++.|+++++..
T Consensus 862 IvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 862 IVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 799999998866 543 68999999999864
No 68
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.80 E-value=1.6e-20 Score=188.85 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhccC---CCCCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---Cc
Q 023126 162 PLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EK 228 (287)
Q Consensus 162 ~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~ 228 (287)
.+++.++++.++.. .++++.+|||||+||++||++++.+ ++++|+|||+..||. .+++.+.++.+ .+
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 34567788888743 3678889999999999999999985 699999999999998 44455555543 24
Q ss_pred eEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
|++|||++++.. |++ |++++.|+++++..
T Consensus 787 IvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 787 IAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 689999999833 433 47778888888653
No 69
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.79 E-value=4.5e-20 Score=168.48 Aligned_cols=163 Identities=31% Similarity=0.531 Sum_probs=133.1
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccC-----------------------------
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----------------------------- 175 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~----------------------------- 175 (287)
.+.+++||+|+++...+.-.++.......+|.|.++|...+.+.++.|...
T Consensus 155 ~v~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 2ga8_A 155 IAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTI 234 (359)
T ss_dssp SEEEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTC
T ss_pred eEEEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccC
Confidence 478899999998876665554444446678899999999888888777543
Q ss_pred CCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc-----CceEEEeCHHHHHHHHhhccccCC
Q 023126 176 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTG 250 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~-----~~i~vtHd~~~~~~rv~gr~v~~G 250 (287)
....+|.|+.....++.-...+.+.++++|+|+.++++++..|..+.++++ ..|||+-+.++..+|++.|.+..|
T Consensus 235 ~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~G 314 (359)
T 2ga8_A 235 PDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSG 314 (359)
T ss_dssp CCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTT
T ss_pred ceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccC
Confidence 334677888888888877666666689999999999999778889999998 678999999999999999988888
Q ss_pred C--hHHHHHHHHHhcCcchHHHHhhcCCCccEEeccCCC
Q 023126 251 K--PPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSIDI 287 (287)
Q Consensus 251 ~--~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~~ 287 (287)
. ..+.+.+++..+..|+.+||+|++.+||+|+.+-++
T Consensus 315 l~~s~eea~~r~~~~d~pN~~~I~~~~~~ad~i~~~~~~ 353 (359)
T 2ga8_A 315 LVTTIAEGREKFRSNDLLNGRDIDNHLIKVDNIVHIRND 353 (359)
T ss_dssp SCSSHHHHHHHHHHCTTTSSHHHHHTBCCCTTEEEEECC
T ss_pred CCCCHHHHHHHHHhcCchhhHhHhhcCCCCCEEEEecCC
Confidence 7 677777777788999999999999999999976553
No 70
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.79 E-value=2.9e-20 Score=168.03 Aligned_cols=214 Identities=18% Similarity=0.234 Sum_probs=136.5
Q ss_pred CCccccCcccccccccchhhhhhcCcc-cee-------------------cCCeEEEEECCCCCCHHHHHHHHHHHhccc
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-PVV-------------------EARHIVGLAGPPGAGKSTLAAEVVRRINKI 108 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i-------------------~~GeivgIiG~nGsGKSTLlk~L~G~l~~~ 108 (287)
..+++++++++.|+. ++ +++ +.+ .+|+++||+|+||||||||+++|+|++..
T Consensus 35 ~~~i~~~~v~~~y~~--~~-----~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~- 106 (308)
T 1sq5_A 35 NEDLSLEEVAEIYLP--LS-----RLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR- 106 (308)
T ss_dssp CTTCCHHHHHHTHHH--HH-----HHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-
T ss_pred ccccchHhHHHHHHH--HH-----HHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-
Confidence 457888999999952 22 333 333 89999999999999999999999998741
Q ss_pred CCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCC-CCCCCCCccc
Q 023126 109 WPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGV 187 (287)
Q Consensus 109 ~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~lSgG~ 187 (287)
+|++|++. ++++|++.... .....+.+. ..++.+...+.......+..+..... ...+.++...
T Consensus 107 ~~~~G~i~-----------vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~ 171 (308)
T 1sq5_A 107 WPEHRRVE-----------LITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLI 171 (308)
T ss_dssp STTCCCEE-----------EEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTT
T ss_pred CCCCCeEE-----------EEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccc
Confidence 25677643 45555543211 000100000 11222233344444444444443333 4556777777
Q ss_pred CCchhhhhhhccCccEEEEcCcccCCChh------hHHHHHHhhcCceEEEeCHHHHHHHHhhcccc-------------
Q 023126 188 GDPVEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS------------- 248 (287)
Q Consensus 188 ~qrv~ia~al~~~a~~li~d~~~lllDe~------~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~------------- 248 (287)
.+|+..+.....+++++|+|+++++.++. -...+.++++..|+|+.+.+...+|++.|...
T Consensus 172 ~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~ 251 (308)
T 1sq5_A 172 YDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYF 251 (308)
T ss_dssp TEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTT
T ss_pred cCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhh
Confidence 77776554555668999999999998720 00135667888899999999988877755421
Q ss_pred ---CCChHHH----HHHHHHhcCcchHH-HHhhcCCCccEEeccC
Q 023126 249 ---TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSI 285 (287)
Q Consensus 249 ---~G~~~ev----~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~ 285 (287)
.|.+++. +..+|....+|+++ |+.|.+.+||+||++.
T Consensus 252 ~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~ 296 (308)
T 1sq5_A 252 HNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKS 296 (308)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEEC
T ss_pred hcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeC
Confidence 2555553 33445555677786 9999999999999875
No 71
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=6.2e-20 Score=185.36 Aligned_cols=95 Identities=18% Similarity=0.181 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---Cce
Q 023126 163 LLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKW 229 (287)
Q Consensus 163 ~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~i 229 (287)
.+..+.++.++. ..++++.+|||||+||++||++++.+ ++++|+|||+..||. .+++.|.++.+ .+|
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 345677788874 34678889999999999999999976 499999999999998 45555555543 246
Q ss_pred EEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 230 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 230 ~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
++|||++++.. |++ |++++.|+++++..
T Consensus 903 visHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 903 VIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 99999998743 433 57788888888753
No 72
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.79 E-value=1e-19 Score=184.36 Aligned_cols=94 Identities=21% Similarity=0.225 Sum_probs=72.2
Q ss_pred HHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC---ccEEEEcCcccCCCh----hhHHHHHHhhc---CceE
Q 023126 164 LLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWF 230 (287)
Q Consensus 164 ~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~---a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~ 230 (287)
+..+.|+.++. ..++++.+|||||+||++||++++.+ ++++|+|||+..||. .+++.|.++.+ .+|+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 44667777774 34678889999999999999999976 499999999999998 34455555433 2469
Q ss_pred EEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 231 IEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 231 vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
+|||++++.. |++ |++++.|+++++..
T Consensus 922 isHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 922 IEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp ECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999998743 433 47788899888754
No 73
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.78 E-value=1.7e-19 Score=161.65 Aligned_cols=193 Identities=18% Similarity=0.193 Sum_probs=128.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH------
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH------ 151 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~------ 151 (287)
-.++.++||+|++|||||||++.|.+++. +. |. ....+.+++||+++++. +..+|+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence 45688999999999999999999999997 43 10 01124555999887643 5556665541
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCC----------CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhh----
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQG----------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV---- 217 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~---- 217 (287)
...+.+.+.+.+.+.+.+..+..+. ..+-..+||||+||++++.+...+++++|+||+++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~ 173 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIE 173 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTT
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccchhhh
Confidence 2234678888888889998887552 12334789999999998743323899999999999999742
Q ss_pred ------------HHH-------HHHhhcCc---eEEEe-CHHHHHHHHhhc--c-c-cC--CChHHHHHHHHHhcCcchH
Q 023126 218 ------------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-I-ST--GKPPDVAKWRIEYNDRPNA 268 (287)
Q Consensus 218 ------------~~~-------l~~~~~~~---i~vtH-d~~~~~~rv~gr--~-v-~~--G~~~ev~~~~~~~~~~~~~ 268 (287)
.+. +.++++.. ||+.- +.+.+.+|.+.| . + +. |...|.+.++. ...+|++
T Consensus 174 ~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~-~~~~p~y 252 (290)
T 1odf_A 174 NNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFV-DRYMPSY 252 (290)
T ss_dssp TCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHH-HTTHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH-HHhcchH
Confidence 222 23345666 99988 555555534533 2 2 23 76666665544 4567776
Q ss_pred H-HHhhc------CCCccEEeccC
Q 023126 269 E-LIMKS------KKNADLVIKSI 285 (287)
Q Consensus 269 ~-~i~~~------~~~aD~i~~~~ 285 (287)
+ |+.|. ..+||+|+..-
T Consensus 253 ~~~~~~~~~~~~~~~~adlvl~~~ 276 (290)
T 1odf_A 253 KLYLNDFVRSESLGSIATLTLGID 276 (290)
T ss_dssp HHHHHHHHHHTCSSSSEEEEEEEC
T ss_pred HHHhHHHHHhccCCCCCCEEEEEC
Confidence 5 55442 23899998643
No 74
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.77 E-value=1.4e-19 Score=149.74 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=81.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+.+++|++++|+||||||||||++++.+-.. ..++.. ..++++|++...... -++++.+
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---~~~~d~---------~~g~~~~~~~~~~~~-~~~~~~~-------- 62 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---VISSDF---------CRGLMSDDENDQTVT-GAAFDVL-------- 62 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCGGG---EEEHHH---------HHHHHCSSTTCGGGH-HHHHHHH--------
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccCCe---EEccHH---------HHHHhcCcccchhhH-HHHHHHH--------
Confidence 7899999999999999999999995332111 000000 012233332210000 0000000
Q ss_pred CCCCchHHHHHHHHHHhcc-CCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh----------------hH
Q 023126 156 APWTFNPLLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----------------VW 218 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~-~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~----------------~~ 218 (287)
.......+ ..+. .........|+||+||+++|++++.+++++++|+|+..||+. ..
T Consensus 63 ------~~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 63 ------HYIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp ------HHHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred ------HHHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 00111111 2221 111233456999999999999999999999999999999975 44
Q ss_pred HHHHHhhc-------CceEEEeCHHHHHH
Q 023126 219 KDVSSMFD-------EKWFIEVDLDTAMQ 240 (287)
Q Consensus 219 ~~l~~~~~-------~~i~vtHd~~~~~~ 240 (287)
+.+.+... ..|++|||++++..
T Consensus 136 ~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 136 QQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 45444422 24699999999865
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.77 E-value=7.2e-20 Score=162.53 Aligned_cols=142 Identities=13% Similarity=0.057 Sum_probs=86.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-----CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 157 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-----~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~ 157 (287)
.++|+||||||||||+++|+|++. |++|++.++|... ...+++++|+..... .+|+.+|+.++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~--~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM--KLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CC--EEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcC--CceEEechhhhhhccc--
Confidence 589999999999999999999999 9999998877532 356899999865433 3899999987643222
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc--CceEEEeCH
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--EKWFIEVDL 235 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~--~~i~vtHd~ 235 (287)
....+.+.+.+. ....+..+.+|||||+||+++|++++ .++++||+.-.+|+.-.+.++.+.. ..|++.|..
T Consensus 77 -~~~~~~i~~~~~--~~~~~~~~~~LS~G~~qrv~iaRal~---~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~ 150 (270)
T 3sop_A 77 -ENCWEPIEKYIN--EQYEKFLKEEVNIARKKRIPDTRVHC---CLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKA 150 (270)
T ss_dssp -TTCSHHHHHHHH--HHHHHHHHHHSCTTCCSSCCCCSCCE---EEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred -HHHHHHHHHHHH--HHHHhhhHHhcCcccchhhhhheeee---eeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence 222233333332 11223345589999999999999874 5899999988888844444444433 345677666
Q ss_pred HH
Q 023126 236 DT 237 (287)
Q Consensus 236 ~~ 237 (287)
+.
T Consensus 151 D~ 152 (270)
T 3sop_A 151 DT 152 (270)
T ss_dssp GG
T ss_pred cc
Confidence 53
No 76
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.76 E-value=8.3e-21 Score=170.92 Aligned_cols=156 Identities=10% Similarity=0.016 Sum_probs=108.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEE
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 129 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v 129 (287)
.++++++++.|+ ..++ +++ +.+++|++++|+||||||||||+++|+|++ +|+| ++++
T Consensus 101 ~i~~~~vs~~y~-~~vL-----~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I----------~~~v 158 (305)
T 2v9p_A 101 FFNYQNIELITF-INAL-----KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV----------LSFA 158 (305)
T ss_dssp HHHHTTCCHHHH-HHHH-----HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE----------ECGG
T ss_pred eEEEEEEEEEcC-hhhh-----ccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE----------EEEe
Confidence 478889999997 4455 788 999999999999999999999999999997 3655 3456
Q ss_pred eCCCCCCCcccCCccc-cHHHHHHhcCCCCCchHHHHHHHHHH-hccCCCCCCCCCCcccCCchhhhhhhccCccEEEEc
Q 023126 130 PMDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (287)
Q Consensus 130 ~qd~~~~~~~~ltv~e-~i~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d 207 (287)
+|++..+. .|+.+ |+.+.. .. .+.+.+.++. +....+ ...|||||||| |++++.+|++||
T Consensus 159 ~q~~~lf~---~ti~~~ni~~~~------~~--~~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl-- 220 (305)
T 2v9p_A 159 NHKSHFWL---ASLADTRAALVD------DA--THACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV-- 220 (305)
T ss_dssp GTTSGGGG---GGGTTCSCEEEE------EE--CHHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE--
T ss_pred cCcccccc---ccHHHHhhccCc------cc--cHHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE--
Confidence 77754333 35665 665421 01 1234455555 433333 67999999999 899999999999
Q ss_pred CcccCCChhhHHHHHHhhcCceEEEeCHHHHHH--HHh---hccccCCChHHH
Q 023126 208 GNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ--RVL---KRHISTGKPPDV 255 (287)
Q Consensus 208 ~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~--rv~---gr~v~~G~~~ev 255 (287)
+..||....+.+..+ +|+++.+.. +++ |++++.|+++++
T Consensus 221 --Ts~LD~~~~~~i~~l-------tH~~~~~~~aD~ivl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 --TSNIDVQAEDRYLYL-------HSRVQTFRFEQPCTDESGEQPFNITDADW 264 (305)
T ss_dssp --EESSCSTTCGGGGGG-------TTTEEEEECCCCCCCC---CCCCCCHHHH
T ss_pred --ECCCCHHHHHHHHHH-------hCCHHHHHhCCEEEEeCCEEEEeCCHHHH
Confidence 888997433333322 555543322 223 888999999988
No 77
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.71 E-value=3.9e-19 Score=166.27 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=47.2
Q ss_pred CCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhh--cCceEEEeCHHHHH
Q 023126 183 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMF--DEKWFIEVDLDTAM 239 (287)
Q Consensus 183 lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~--~~~i~vtHd~~~~~ 239 (287)
|||||+||+++|++++.++ ++||+|+++..||. .+.+.|+++. ..+|+||||++++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~ 360 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA 360 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh
Confidence 6999999999999999999 99999999999998 3445555554 23578999997763
No 78
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.71 E-value=1.1e-19 Score=170.04 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=97.7
Q ss_pred Ccc-ceecCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeC
Q 023126 73 REI-PVVEARH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 131 (287)
Q Consensus 73 ~~~-~~i~~Ge--------------------ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~q 131 (287)
+++ +.+++|+ ++||+||||||||||+|+|+|+++ |++|+|.+++....+ .++++|
T Consensus 40 ~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t~-~~~v~q 115 (413)
T 1tq4_A 40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVTM-ERHPYK 115 (413)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC----C-CCEEEE
T ss_pred hhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecce-eEEecc
Confidence 677 8899999 999999999999999999999999 999999988765432 367888
Q ss_pred CCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCC-CCCCCCCCcc--cCCchhhhhhhcc---------
Q 023126 132 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL--------- 199 (287)
Q Consensus 132 d~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lSgG--~~qrv~ia~al~~--------- 199 (287)
++. . +.+++.+++.+.. + ..++.+.++.++... +..+ .||+| |+||+.++++++.
T Consensus 116 ~~~-~--~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~lV~ 182 (413)
T 1tq4_A 116 HPN-I--PNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYFVR 182 (413)
T ss_dssp CSS-C--TTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccc-c--CCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 743 2 2478888875421 1 123456666666322 3333 39999 9999999999988
Q ss_pred -CccEEEEcCcccCCCh----hhHHHHHHh
Q 023126 200 -QHKVVIVDGNYLFLDG----GVWKDVSSM 224 (287)
Q Consensus 200 -~a~~li~d~~~lllDe----~~~~~l~~~ 224 (287)
+++++++||++..+|. .+++.++++
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 6777777777777776 445555554
No 79
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.69 E-value=3.9e-18 Score=142.22 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=86.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC--CCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 160 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~--~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~ 160 (287)
+++|+||||||||||+++|+|++.- .-.|.....-. .....++|++|+. ++.+++. ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~~---~~~~~~~-- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKIF---SSKFFTS-- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------CCEEEEEET--------TCCEEEE---EETTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEhhhhccccccceeEEEeecC--------cHHHHHH---HhhcCCc--
Confidence 6899999999999999999999851 11221100000 1234578888764 2223321 0001100
Q ss_pred hHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhh-----hccCccEEEEcC--cccCCChhhHHHHHHhhc---C-ce
Q 023126 161 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFD---E-KW 229 (287)
Q Consensus 161 ~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~a-----l~~~a~~li~d~--~~lllDe~~~~~l~~~~~---~-~i 229 (287)
....+.++..|||||+||+++|++ ++.+++++++|| ++..+|+...+.+.+... . .+
T Consensus 67 ------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 67 ------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 023455677999999999999996 899999999999 999999977666666653 2 46
Q ss_pred EEE---eCHHHHHH
Q 023126 230 FIE---VDLDTAMQ 240 (287)
Q Consensus 230 ~vt---Hd~~~~~~ 240 (287)
+++ ||.+.+..
T Consensus 135 ~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 135 ATIPIRDVHPLVKE 148 (178)
T ss_dssp EECCSSCCSHHHHH
T ss_pred EEEccCCCchHHHH
Confidence 777 47777765
No 80
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.68 E-value=4.7e-19 Score=150.82 Aligned_cols=67 Identities=22% Similarity=0.166 Sum_probs=41.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC----CCceeEEEeCCCCCCCcccCCccccH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVATVLPMDGFHLYLSQLDAMEDP 147 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~----~~~~i~~v~qd~~~~~~~~ltv~e~i 147 (287)
..+++|++++|+||||||||||+++|+|+++ ...+.+...+.. ..+.++|++|+...+. .+++.+++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~--~~~~~~~l 85 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ--QLIDQGEL 85 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHHH--HHHHTTCE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHHH--HHHhcCCc
Confidence 6899999999999999999999999999985 322222111110 1234788898854322 35555554
No 81
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.67 E-value=3.4e-19 Score=168.24 Aligned_cols=174 Identities=7% Similarity=-0.097 Sum_probs=116.8
Q ss_pred CccccCccccccc-ccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC-------
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 121 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~------- 121 (287)
++++.+++++.|+ +..++ ++++.+.+|++++|+||||||||||+++|+|+.+ |+.|.+.+.|..
T Consensus 130 ~~l~~~~v~~~~~tg~~vl-----d~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAI-----NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHH-----HHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCceEE-----eeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 5789999999997 45566 7779999999999999999999999999999999 999998887762
Q ss_pred ---------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchh
Q 023126 122 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 192 (287)
Q Consensus 122 ---------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ 192 (287)
..+.+++++|++.... ..+++.+|+.+....+.... .+ +.... ..+..||+|| ||++
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~~-~~~~v~~~~~~~ae~~~~~~-~~----------v~~~l-d~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSPL-LRMQGAAYATRIAEDFRDRG-QH----------VLLIM-DSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCHH-HHHHHHHHHHHHHHHHHTTT-CE----------EEEEE-ECHHHHHHHH-HHHH
T ss_pred HHhhccccccCceEEEEECCCCCHH-HHHHHHHHHHHHHHHHHhCC-CC----------HHHHH-HhHHHHHHHH-HHHH
Confidence 1234899999644332 24677787776544332110 00 00000 1245789999 9999
Q ss_pred hhhhhccCccEEEEcCcccCCChhh----HHHHHHhhc-----C-------ceEEEeCHHHHHH-HHh----hccccCCC
Q 023126 193 DDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD-----E-------KWFIEVDLDTAMQ-RVL----KRHISTGK 251 (287)
Q Consensus 193 ia~al~~~a~~li~d~~~lllDe~~----~~~l~~~~~-----~-------~i~vtHd~~~~~~-rv~----gr~v~~G~ 251 (287)
+| +.++++ +..+|... .+.+.++.. . +++++||++.... +++ |+++..|.
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCC
Confidence 96 333433 78899843 344444433 1 2367899973222 333 66666665
Q ss_pred hHH
Q 023126 252 PPD 254 (287)
Q Consensus 252 ~~e 254 (287)
+.+
T Consensus 339 ~~~ 341 (438)
T 2dpy_A 339 LAE 341 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.67 E-value=1.1e-18 Score=150.04 Aligned_cols=151 Identities=13% Similarity=0.003 Sum_probs=86.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC---------CCceeEEEeCCCCCCCcccCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------PPDVATVLPMDGFHLYLSQLD 142 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~---------~~~~i~~v~qd~~~~~~~~lt 142 (287)
+++ +.+++|++++|+||||||||||+++|+|++ | |++.+ +.. ..+.++|++|+...+.. ++
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~ 84 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED--KL 84 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH--HH
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH--hh
Confidence 777 999999999999999999999999999976 6 88776 321 12346777877432211 11
Q ss_pred -ccccHH---HHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh---
Q 023126 143 -AMEDPK---EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG--- 215 (287)
Q Consensus 143 -v~e~i~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe--- 215 (287)
..+++. +....++. ....+.++++..... .....+||||+||++++ ....+++++.+|+++.|||
T Consensus 85 ~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~~~ 156 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTH--IKNALYIFIKPPSTDVLLSRLL 156 (218)
T ss_dssp HTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSS--CCSCEEEEEECSCHHHHHHHHH
T ss_pred hccchhhhhhcccccCCC----cHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHHHH
Confidence 111111 11111221 123455555543311 11147899999999884 1223677777788888887
Q ss_pred --------hhHHHHHHhh----------cCceEEEeCHHHHHH
Q 023126 216 --------GVWKDVSSMF----------DEKWFIEVDLDTAMQ 240 (287)
Q Consensus 216 --------~~~~~l~~~~----------~~~i~vtHd~~~~~~ 240 (287)
.+.+.+.... -..|+++||++++..
T Consensus 157 ~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 157 TRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 2333333221 124789999998877
No 83
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.66 E-value=6.1e-18 Score=152.39 Aligned_cols=143 Identities=9% Similarity=0.054 Sum_probs=99.9
Q ss_pred cc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc--------------eeEEEeCCCC-CCC
Q 023126 74 EI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGF-HLY 137 (287)
Q Consensus 74 ~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--------------~i~~v~qd~~-~~~ 137 (287)
.+ +.+++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .++|++|+.. ..
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~- 167 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK- 167 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC-
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC-
Confidence 44 6789999999999999999999999999999 999999887765421 3799999854 32
Q ss_pred cccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCC
Q 023126 138 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL 213 (287)
Q Consensus 138 ~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lll 213 (287)
+.+++++++.+.... +. + ..+++.++. ..+.++.+|| +||++++++++..|+ +|++| ++..+
T Consensus 168 -~~~~v~e~l~~~~~~-~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 168 -AATVLSKAVKRGKEE-GY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp -HHHHHHHHHHHHHHT-TC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred -HHHHHHHHHHHHHHc-CC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 236888888765321 11 1 011222221 1223445788 899999999999999 99999 99999
Q ss_pred Chh-hHHHHHHhhc-CceEEEeC
Q 023126 214 DGG-VWKDVSSMFD-EKWFIEVD 234 (287)
Q Consensus 214 De~-~~~~l~~~~~-~~i~vtHd 234 (287)
|.. ..+.+.+... ..+++||.
T Consensus 234 D~~~~~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 234 NMLPQAREFNEVVGITGLILTKL 256 (302)
T ss_dssp GGHHHHHHHHHHTCCCEEEEECC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCC
Confidence 963 2223322222 35799993
No 84
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.64 E-value=3e-16 Score=142.98 Aligned_cols=136 Identities=7% Similarity=-0.037 Sum_probs=94.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|.|.+++... +.... ..+++.+
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e-----------~~~~~----~~~~i~~-- 221 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEE-----------IVFKH----HKNYTQL-- 221 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCC-----------CCCSS----CSSEEEE--
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeec-----------ccccc----chhEEEE--
Confidence 667 8899999999999999999999999999999 9999888766421 00000 0000000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc---Cc
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD---EK 228 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~---~~ 228 (287)
. . .|||+||+++++++..+|+++++||+.. .+.++.+..+.. .+
T Consensus 222 --~--~--------------------------ggg~~~r~~la~aL~~~p~ilildE~~~---~e~~~~l~~~~~g~~tv 268 (330)
T 2pt7_A 222 --F--F--------------------------GGNITSADCLKSCLRMRPDRIILGELRS---SEAYDFYNVLCSGHKGT 268 (330)
T ss_dssp --E--C--------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS---THHHHHHHHHHTTCCCE
T ss_pred --E--e--------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh---HHHHHHHHHHhcCCCEE
Confidence 0 0 0899999999999999999999998875 345666666543 24
Q ss_pred eEEEeCHHHHHH--HHh----hccccCCChHHHHHHHHH
Q 023126 229 WFIEVDLDTAMQ--RVL----KRHISTGKPPDVAKWRIE 261 (287)
Q Consensus 229 i~vtHd~~~~~~--rv~----gr~v~~G~~~ev~~~~~~ 261 (287)
++++|+.+.... |++ |.....+.+.+.+.....
T Consensus 269 i~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~~i~~~i~ 307 (330)
T 2pt7_A 269 LTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFK 307 (330)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTSGGGTTSCHHHHHHHHH
T ss_pred EEEEcccHHHHHhhhheehhcCCcccCCCCHHHHHHHHH
Confidence 689999984433 554 333334555666555544
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.63 E-value=2.5e-16 Score=145.42 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=50.4
Q ss_pred CCCCCCCCcccCCchhhhhhhc------cCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~------~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
++++.+|||||+||++||++++ .+|+++++|||+..||+. +++.+.++.+ .+|++|||++..
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~ 348 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS 348 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence 3567799999999999999998 699999999999999983 4445555543 246899999984
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.61 E-value=3.9e-17 Score=150.17 Aligned_cols=141 Identities=9% Similarity=0.024 Sum_probs=99.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------------ceeEEEeCCCC-CCCccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGF-HLYLSQ 140 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------------~~i~~v~qd~~-~~~~~~ 140 (287)
+.+++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+.. ..+++++|+.. ..+ .
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p--~ 226 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA--A 226 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH--H
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh--h
Confidence 6788999999999999999999999999999 99999988776542 13789998854 322 3
Q ss_pred CCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc--CCCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCCChh
Q 023126 141 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGG 216 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lllDe~ 216 (287)
.++++++.+.... +. +. .+++.++. ..+..+.+|| +||++++++++..|+ +|++| ++..+|..
T Consensus 227 ~tv~e~l~~~~~~-~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 227 TVLSKAVKRGKEE-GY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHHT-TC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhHHHHHHHHHhC-CC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 6888888765421 11 10 11222221 1123444688 899999999999999 99999 89999962
Q ss_pred -hHHHHHHhhc-CceEEEeC
Q 023126 217 -VWKDVSSMFD-EKWFIEVD 234 (287)
Q Consensus 217 -~~~~l~~~~~-~~i~vtHd 234 (287)
..+.+.+... .++++||.
T Consensus 294 ~~~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 294 PQAREFNEVVGITGLILTKL 313 (359)
T ss_dssp HHHHHHHHHTCCCEEEEESC
T ss_pred HHHHHHHHhcCCeEEEEecC
Confidence 2222322222 35799994
No 87
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.57 E-value=1e-16 Score=146.92 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=55.4
Q ss_pred CccccCccccccc-ccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 50 PVFGKTRSLVQNK-TSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
++++.+++++.|+ +..++ ++++.+.+|+++||+||||||||||+++|+|++. |+.|.+.+.|.
T Consensus 44 ~~i~~~~l~~~~~tg~~al-----d~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAI-----DGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHH-----HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESC
T ss_pred CCeeecccceecCCCCEEE-----EeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEecc
Confidence 5789999999998 45566 7889999999999999999999999999999999 99998765553
No 88
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.57 E-value=6.8e-16 Score=140.06 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=48.3
Q ss_pred CCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTA 238 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~~ 238 (287)
+.++..||+||+||+++|++++ .+++++++|+++..||+. +++.++++.. ..|++||+.+..
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~ 285 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM 285 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHH
Confidence 4456799999999999999986 578999999999999993 4444555432 347999997543
No 89
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.50 E-value=7.2e-15 Score=120.07 Aligned_cols=86 Identities=20% Similarity=0.169 Sum_probs=66.8
Q ss_pred cccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCce---eE
Q 023126 52 FGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---AT 127 (287)
Q Consensus 52 ~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~---i~ 127 (287)
+...++++.|+.+.++ +++ +.+++|++++|+||||||||||+|+|+|++ |++|+|.+++...... ..
T Consensus 8 ~~~~~~~~~~g~~~~l-----~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~ 78 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAE-----ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAG 78 (158)
T ss_dssp ECSHHHHHHHHHHHHH-----HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHH-----hccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCC
Confidence 3445678888877777 887 999999999999999999999999999998 7899999887654211 12
Q ss_pred EEeCCCCCCCcccCCccccHHH
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKE 149 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~ 149 (287)
+++|+. .++ .+|+.+++.+
T Consensus 79 ~~~q~~-~l~--~ltv~e~l~~ 97 (158)
T 1htw_A 79 KMIYHF-DLY--RLADPEELEF 97 (158)
T ss_dssp EEEEEE-ECT--TCSCTTHHHH
T ss_pred cceecc-ccc--cCCcHHHHHH
Confidence 567763 333 3899888854
No 90
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.49 E-value=6.5e-15 Score=126.63 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCcccccCCCCCC----ceeEEEeCCCCCCCcccCCc----cc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDA----ME 145 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p--~~G~i~~~~~~~~----~~i~~v~qd~~~~~~~~ltv----~e 145 (287)
...++|++++|+||||||||||+++|+|+++ | ..|.+.+.+.... ..++|++|+...+. .+++ .|
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~--~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK--EMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH--HHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcccccCceEEECCHHHHH--HHHhcCHHHH
Confidence 4588999999999999999999999999997 7 5787776554321 23677777643221 1333 34
Q ss_pred cHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhh
Q 023126 146 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 225 (287)
Q Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~ 225 (287)
++.+....++. ..+.+.++++ ..+++++| +|....+.+.+.+
T Consensus 86 ~~~~~~~~yg~----~~~~v~~~l~-----------------------------~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 86 HAEVFGNYYGT----SREAIEQVLA-----------------------------TGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEEETTEEEEE----EHHHHHHHHT-----------------------------TTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHHhccCCC----CHHHHHHHHh-----------------------------cCCeEEEE-----ECHHHHHHHHHHc
Confidence 43322112221 1122333321 25788888 8987777777766
Q ss_pred cC---ceEEEeCHHHHHHHHhhccccCCChHHHH
Q 023126 226 DE---KWFIEVDLDTAMQRVLKRHISTGKPPDVA 256 (287)
Q Consensus 226 ~~---~i~vtHd~~~~~~rv~gr~v~~G~~~ev~ 256 (287)
.. +++++|+++++..|+.+|- .++++++.
T Consensus 128 ~~~~tI~i~th~~~~l~~Rl~~rG--~~~~e~i~ 159 (219)
T 1s96_A 128 PHARSIFILPPSKIELDRRLRGRG--QDSEEVIA 159 (219)
T ss_dssp TTCEEEEEECSSHHHHHHHHHTTS--CSCHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHcC--CCCHHHHH
Confidence 43 3578999999988765332 34555543
No 91
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=2.9e-15 Score=134.84 Aligned_cols=155 Identities=13% Similarity=0.017 Sum_probs=73.6
Q ss_pred CcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCCcccccCCCCC-----CceeE
Q 023126 55 TRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVAT 127 (287)
Q Consensus 55 ~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~-l~~~~p~~G~i~~~~~~~-----~~~i~ 127 (287)
++++++|+.+.++ +++ +.| +|+|+||||||||+++|.|. +. |++| +.+.|... ...++
T Consensus 2 ~~l~~~~~~~~~l-----~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~g-i~~~g~~~~~t~~~~~~~ 66 (301)
T 2qnr_A 2 SNLPNQVHRKSVK-----KGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERV-ISGAAEKIERTVQIEAST 66 (301)
T ss_dssp ---------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CE
T ss_pred CCCcceECCEEEE-----cCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCC-cccCCcccCCcceEeeEE
Confidence 4678888887777 777 765 99999999999999999997 76 8888 65444321 23367
Q ss_pred EEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEc
Q 023126 128 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 207 (287)
Q Consensus 128 ~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d 207 (287)
+++|...... .+++++++.++..... . ++...+.+.+....+.++.++||||+||+.++++++ +++++
T Consensus 67 ~~~q~~~~~~--~ltv~Dt~g~~~~~~~---~---e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ld 134 (301)
T 2qnr_A 67 VEIEERGVKL--RLTVVDTPGYGDAINC---R---DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFI 134 (301)
T ss_dssp EEEC---CCE--EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEE
T ss_pred EEecCCCccc--CcchhhhhhhhhhcCc---H---HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeee
Confidence 7777643322 3788888876432210 0 111111111222223566789999999999965542 78888
Q ss_pred Cccc-CCChhhHHHHHHhhcC----ceEEEeCHH
Q 023126 208 GNYL-FLDGGVWKDVSSMFDE----KWFIEVDLD 236 (287)
Q Consensus 208 ~~~l-llDe~~~~~l~~~~~~----~i~vtHd~~ 236 (287)
+++. .+|+...+.++.+... .|+.+||+.
T Consensus 135 ePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 135 SPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred cCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 8876 4887544555555432 236689974
No 92
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.45 E-value=4.4e-14 Score=127.19 Aligned_cols=140 Identities=12% Similarity=-0.059 Sum_probs=85.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------------ceeEEEeCCCCCCCcccCCccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLYLSQLDAME 145 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------------~~i~~v~qd~~~~~~~~ltv~e 145 (287)
+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+.. ..+++++|+.... +..++++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~--p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD--SAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC--HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC--HHHHHHH
Confidence 689999999999999999999999999 99999988776531 1378888875432 2367777
Q ss_pred cHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccE--EEEcCcccCCChhhHHHHHH
Q 023126 146 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV--VIVDGNYLFLDGGVWKDVSS 223 (287)
Q Consensus 146 ~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~--li~d~~~lllDe~~~~~l~~ 223 (287)
++.+.... +.. . .+++..+. .+.....++...+||++++++++..|+. +.+|+..-. ..++.+..
T Consensus 176 ~v~~~~~~-~~d----~----~llDt~G~-~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~---~~~~~~~~ 242 (304)
T 1rj9_A 176 AVQAMKAR-GYD----L----LFVDTAGR-LHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ---NGLEQAKK 242 (304)
T ss_dssp HHHHHHHH-TCS----E----EEECCCCC-CTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT---HHHHHHHH
T ss_pred HHHHHHhC-CCC----E----EEecCCCC-CCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH---HHHHHHHH
Confidence 77654321 100 0 00000110 0111111222337899999999888883 334432221 34444444
Q ss_pred hhc----CceEEEeCHHH
Q 023126 224 MFD----EKWFIEVDLDT 237 (287)
Q Consensus 224 ~~~----~~i~vtHd~~~ 237 (287)
+.+ ..+++||+.+.
T Consensus 243 ~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 243 FHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHCCSEEEEECTTSS
T ss_pred HHHHcCCcEEEEECCccc
Confidence 432 35799998654
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.45 E-value=9.4e-14 Score=133.97 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=87.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
.+.+|++++|+|+||||||||++.++|... |+ |+ ..+.+.+|++. ..+..+ ...++.
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~-G~---------~vi~~~~ee~~------~~l~~~----~~~~g~ 333 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC---AN-KE---------RAILFAYEESR------AQLLRN----AYSWGM 333 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH---TT-TC---------CEEEEESSSCH------HHHHHH----HHTTSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hC-CC---------CEEEEEEeCCH------HHHHHH----HHHcCC
Confidence 799999999999999999999999999997 74 43 11344555531 011111 112222
Q ss_pred CCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChh-----hHHHHHHh----h
Q 023126 157 PWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG-----VWKDVSSM----F 225 (287)
Q Consensus 157 ~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~-----~~~~l~~~----~ 225 (287)
+.+ + +...+ ...+.++..||+||+||+++++++..+|+++++| ++..+|.. ..+.+.++ .
T Consensus 334 ----~~~---~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 334 ----DFE---E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAK 404 (525)
T ss_dssp ----CHH---H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHH
T ss_pred ----CHH---H-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHH
Confidence 111 1 22222 3445667799999999999999999999999999 99989875 44443333 2
Q ss_pred c---CceEEEeCH
Q 023126 226 D---EKWFIEVDL 235 (287)
Q Consensus 226 ~---~~i~vtHd~ 235 (287)
+ .+++++|+.
T Consensus 405 ~~g~tvilvsh~~ 417 (525)
T 1tf7_A 405 QEEITGLFTNTSD 417 (525)
T ss_dssp HTTCEEEEEEECS
T ss_pred hCCCEEEEEECcc
Confidence 2 236899998
No 94
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.45 E-value=8e-15 Score=150.78 Aligned_cols=148 Identities=16% Similarity=0.089 Sum_probs=98.6
Q ss_pred CCCccccCc-----ccccc-cccchhhhhhcCcc-ceecC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 48 AQPVFGKTR-----SLVQN-KTSLKVLCSQRREI-PVVEA-------RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 48 ~~~~~~~~~-----~~~~~-~~~~~~v~~~~~~~-~~i~~-------GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
..+++++++ +.+.| +...++ +++ +.+.+ |++++|+||||||||||+|+| |++. +-
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~~~v~-----ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~-- 815 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGDDFIP-----NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VM-- 815 (1022)
T ss_dssp SCCCEEEEEECCCC------CCCCCC-----EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HH--
T ss_pred CCceEEEEeccccEEEEEecCCceEe-----eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HH--
Confidence 345677777 77777 556666 787 88877 899999999999999999999 9986 31
Q ss_pred ccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhh
Q 023126 114 SSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 114 ~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~i 193 (287)
.+..+|+||+.. .+++.+++.. ..+.. + .......++|++|++ +++
T Consensus 816 ---------aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~-----d-----------~~~~~~stf~~em~~-~a~ 861 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC-----RLTPIDRVFT---RLGAS-----D-----------RIMSGESTFFVELSE-TAS 861 (1022)
T ss_dssp ---------HTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHH
T ss_pred ---------hheeEEeccCcC-----CCCHHHHHHH---HcCCH-----H-----------HHhhchhhhHHHHHH-HHH
Confidence 111238888742 3677666531 11110 0 011123466777764 888
Q ss_pred hhhhccCccEEEEcCcccCCCh-----hhHHHHHHhhcC----ceEEEeCHHHHHH
Q 023126 194 DILVGLQHKVVIVDGNYLFLDG-----GVWKDVSSMFDE----KWFIEVDLDTAMQ 240 (287)
Q Consensus 194 a~al~~~a~~li~d~~~lllDe-----~~~~~l~~~~~~----~i~vtHd~~~~~~ 240 (287)
+++++.++.++++||+...+|. ..+..+..+.+. ++++||+++++..
T Consensus 862 al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 862 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp HHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred HHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 8999999999999999999997 245556555432 4699999999865
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.44 E-value=6.6e-14 Score=123.45 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=75.9
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++. +++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.+. .|++++...+ +.+
T Consensus 18 ~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~~~~~~~~~~------v~q------ 77 (261)
T 2eyu_A 18 LELC-HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----EYVFKHKKSI------VNQ------ 77 (261)
T ss_dssp HHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----CSCCCCSSSE------EEE------
T ss_pred HHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----eeecCCccee------eeH------
Confidence 4444 89999999999999999999999999998 87 89887665432 2233221100 000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcC---c
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE---K 228 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~---~ 228 (287)
..++.. ... -|++++.++..+|+++++||+. |++....+.+.... +
T Consensus 78 ------------------~~~gl~----~~~------l~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~v 126 (261)
T 2eyu_A 78 ------------------REVGED----TKS------FADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLV 126 (261)
T ss_dssp ------------------EEBTTT----BSC------HHHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEE
T ss_pred ------------------HHhCCC----HHH------HHHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEE
Confidence 011100 011 2789999999999999999998 87544333333222 3
Q ss_pred eEEEeCHHHH
Q 023126 229 WFIEVDLDTA 238 (287)
Q Consensus 229 i~vtHd~~~~ 238 (287)
++++|+.+..
T Consensus 127 l~t~H~~~~~ 136 (261)
T 2eyu_A 127 FGTLHTNTAI 136 (261)
T ss_dssp EEEECCSSHH
T ss_pred EEEeCcchHH
Confidence 5789998743
No 96
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.43 E-value=3.7e-14 Score=119.88 Aligned_cols=179 Identities=16% Similarity=0.217 Sum_probs=89.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
...+|++++|+|+||||||||+++|++.++ +.+|.+ .++.+|.+............ ..+...+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v-----------~~~~~d~~~~~~~~~~~~~~-~~~~~~~-- 80 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISV-----------CVFHMDDHIVERAKRYHTGN-EEWFEYY-- 80 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCE-----------EEEEGGGGCCCHHHHSSSSS-CHHHHHH--
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeE-----------EEeccCcccCCHHHHHhcCC-CCccCCC--
Confidence 467899999999999999999999999997 666643 34455544322100000000 0011111
Q ss_pred CCCchHHHHHHH-HHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 157 PWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 157 ~~~~~~~~~~~~-l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
+...+.+.+.+. +..+........+.|..-...+.. +........++|+|+++++.. .+.+.++..|+++.+.
T Consensus 81 ~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~~~ 154 (201)
T 1rz3_A 81 YLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPR 154 (201)
T ss_dssp HTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC-
T ss_pred ccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeCCH
Confidence 123445554333 233322222222233322111111 111223467899999987643 2455677789999999
Q ss_pred HHHHHHHhhccccCCChHHHHHHHHHhcCcchHH-HHhhc--CCCccEEeccC
Q 023126 236 DTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 285 (287)
Q Consensus 236 ~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~ 285 (287)
++..+|++.|. +++ .+.+.....+.++ |+.+. +.+||+||+|.
T Consensus 155 ~~~~~R~~~R~------~~~-~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 155 EIRFARENDQV------KQN-IQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp -------------------C-HHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHHHhcCC------HHH-HHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 98888877665 222 2223222345565 76665 68899999874
No 97
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.40 E-value=5.5e-15 Score=138.56 Aligned_cols=143 Identities=12% Similarity=0.020 Sum_probs=89.0
Q ss_pred ccccCcccccccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc------
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 124 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~------ 124 (287)
.+.++++++.++....+ ++++ ..+|++++|+||||||||||+++|+|++. |++|.|.+.+.+...
T Consensus 143 ~~~l~~Lg~~~~~~~~L-----~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-----RRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-----HHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHHHH-----HHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 56778888777655555 5554 48999999999999999999999999999 999998765543211
Q ss_pred ------eeEEEe---------CCCCCCCccc----CCccccHHHHHHhcCC-----CCCchHHHHHHHHHHhccCCCCCC
Q 023126 125 ------VATVLP---------MDGFHLYLSQ----LDAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVYA 180 (287)
Q Consensus 125 ------~i~~v~---------qd~~~~~~~~----ltv~e~i~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~~~~~~ 180 (287)
.+++.+ |++......+ .|+.+++.... .++ ..+.+...+.+.|..++......+
T Consensus 214 q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~--tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~ 291 (418)
T 1p9r_A 214 QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL--TGHLVMSTLHTNTAVGAVTRLRDMGIEPFLIS 291 (418)
T ss_dssp EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH--TTCEEEEEECCSSSHHHHHHHHHHTCCHHHHH
T ss_pred eEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH--hCCCcccccchhhHHHHHHHHHHcCCcHHHHH
Confidence 122222 5543221111 24455554432 121 012222333345556653333355
Q ss_pred CCCCcccCCchhhhhhhccCccEEEE
Q 023126 181 PSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 181 ~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
..|||||+|| ++++++.++++...
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 6899999999 77777777776553
No 98
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.40 E-value=6.5e-16 Score=149.10 Aligned_cols=77 Identities=10% Similarity=-0.008 Sum_probs=58.6
Q ss_pred CCccccCcccccccccchhhhhhcCcc-c-eecCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCCcccccCCCCCC-
Q 023126 49 QPVFGKTRSLVQNKTSLKVLCSQRREI-P-VVEARHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPP- 123 (287)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~i~~GeivgIiG~nGsGKSTLlk~--L~G~l~~~~p~~G~i~~~~~~~~- 123 (287)
+++++.+++.+-++...++ +++ + .+++|++++|+||||||||||+++ ++|+++ |++|.+++++....
T Consensus 10 ~~~~~~~~~~~~~~g~~~L-----d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~ 81 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTMIEGF-----DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQ 81 (525)
T ss_dssp ----CCSSCCEECCCCTTH-----HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHH
T ss_pred CCCccccccccccCCchhH-----HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHH
Confidence 4456666666656566677 888 8 999999999999999999999999 789998 89999988876521
Q ss_pred ------ceeEEEeCCC
Q 023126 124 ------DVATVLPMDG 133 (287)
Q Consensus 124 ------~~i~~v~qd~ 133 (287)
..+++++|+.
T Consensus 82 ~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 82 DIIKNARSFGWDLAKL 97 (525)
T ss_dssp HHHHHHGGGTCCHHHH
T ss_pred HHHHHHHHcCCChHHh
Confidence 2367777763
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.38 E-value=1.1e-13 Score=138.43 Aligned_cols=121 Identities=17% Similarity=0.170 Sum_probs=78.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +. |++++|+||||||||||+|+|+|+..- ++.|.+... ....+++++| .+ +.+++.+|+..
T Consensus 570 ~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa---~~~~i~~v~~----i~-~~~~~~d~l~~-- 634 (765)
T 1ewq_A 570 NDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPA---EEAHLPLFDG----IY-TRIGASDDLAG-- 634 (765)
T ss_dssp EEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCSE----EE-EECCC--------
T ss_pred eeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeeh---hccceeeHHH----hh-ccCCHHHHHHh--
Confidence 555 54 999999999999999999999998631 567764321 1122444333 11 12444444321
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh--ccCccEEEEcCc---ccCCChh-----hHHHH
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG-----VWKDV 221 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al--~~~a~~li~d~~---~lllDe~-----~~~~l 221 (287)
.+|+|+++++.++.++ +.+++++++||+ +.-+|.. +++.+
T Consensus 635 ------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L 684 (765)
T 1ewq_A 635 ------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEAL 684 (765)
T ss_dssp ------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred ------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHH
Confidence 3577888888888887 889999999999 8888862 33334
Q ss_pred HHhhcCceEEEeCHHHH
Q 023126 222 SSMFDEKWFIEVDLDTA 238 (287)
Q Consensus 222 ~~~~~~~i~vtHd~~~~ 238 (287)
.+.-..++++||+.+..
T Consensus 685 ~~~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 685 HERRAYTLFATHYFELT 701 (765)
T ss_dssp HHHTCEEEEECCCHHHH
T ss_pred HhCCCEEEEEeCCHHHH
Confidence 33112357999998875
No 100
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.37 E-value=9.9e-14 Score=136.01 Aligned_cols=155 Identities=8% Similarity=-0.027 Sum_probs=81.9
Q ss_pred ccccCcccccccccchhhhhhcC--------ccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCcccccCCCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRR--------EIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVK 121 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~--------~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p-~~G~i~~~~~~ 121 (287)
.+++++++..|+.....+-...+ ..+.++. +||+||||||||||+++|+|++. | ++|.|.++|..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g~~ 83 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCPLV 83 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSCEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcCEE
Confidence 46677777777654321111111 1133333 89999999999999999999987 8 79999887743
Q ss_pred -----------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCc
Q 023126 122 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP 190 (287)
Q Consensus 122 -----------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qr 190 (287)
....++|++|+....+ .+++.+|+.+.....+.. . .+..+++
T Consensus 84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~i~~~~~~~~~~-----------------~--------~~~s~~~ 136 (608)
T 3szr_A 84 LKLKKLVNEDKWRGKVSYQDYEIEISD--ASEVEKEINKAQNAIAGE-----------------G--------MGISHEL 136 (608)
T ss_dssp EEEEECSSSSCCEEEESCC---CCCCC--HHHHHTTHHHHHHHHHCS-----------------S--------SCCCSCC
T ss_pred EEEecCCccccceeEEeeecccccCCC--HHHHHHHHHHHHHHhcCC-----------------c--------cccchHH
Confidence 1234788888754333 367878776643222110 0 1222355
Q ss_pred hhhhhhhccCccEEEEcCc------ccCCChh----hHHHHHHhhcC---c--eEEEeCHHHH
Q 023126 191 VEDDILVGLQHKVVIVDGN------YLFLDGG----VWKDVSSMFDE---K--WFIEVDLDTA 238 (287)
Q Consensus 191 v~ia~al~~~a~~li~d~~------~lllDe~----~~~~l~~~~~~---~--i~vtHd~~~~ 238 (287)
+.++.+....++++++|+| +..+|+. +++.+.++... . ++++||++.+
T Consensus 137 i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 137 ITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp EEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 5555556667899999999 8889984 34444443321 1 3789998744
No 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.37 E-value=6.8e-14 Score=117.54 Aligned_cols=130 Identities=14% Similarity=0.039 Sum_probs=83.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC------CCceeEEEeCCCCCCCcccCCccccHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 154 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~ 154 (287)
|++++|+||||||||||+++|+|+++ ++| +.+++.. ..+.+++++|+... . .+++. ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~----~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g----~---~~~l~----~~ 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK----SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG----T---RGPLS----RV 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH----HTT-CCCEEEECCEEETTSSEEEEEEEETTS----C---EEEEE----EC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc----cCC-EEEcCEecchhHhhhceEEEEEEeccc----c---eehhh----cc
Confidence 78999999999999999999999984 567 7776532 23457888887411 0 12211 01
Q ss_pred CCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchh-hhh---hhccCccEEEEcC--cccCCChhhHHHHHHhhcC-
Q 023126 155 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE- 227 (287)
Q Consensus 155 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~-ia~---al~~~a~~li~d~--~~lllDe~~~~~l~~~~~~- 227 (287)
....... .-......+...+|+||++++. ++. |+..+++++++|+ ++-..|+.+++.+.++.+.
T Consensus 65 ~~~~~~~---------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 65 GLEPPPG---------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CCCCCSS---------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cccCCcc---------ccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 1100000 0000122334468899988874 344 4678889999999 7777888888888888753
Q ss_pred --ceE--EE--eCH
Q 023126 228 --KWF--IE--VDL 235 (287)
Q Consensus 228 --~i~--vt--Hd~ 235 (287)
.|+ ++ |+.
T Consensus 136 ~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 136 GTIILGTIPVPKGK 149 (189)
T ss_dssp SCCEEEECCCCCSS
T ss_pred CcEEEEEeecCCCC
Confidence 233 34 886
No 102
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.36 E-value=5e-14 Score=129.21 Aligned_cols=111 Identities=13% Similarity=-0.047 Sum_probs=69.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccC-CC----CCCceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QV----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~-~~----~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
..+|++++|+||||||||||+++|+|.+.. |++|+|... |. .....+++++|+...++ ..++.++.
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d--tpgv~e~~----- 282 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID--SPGVREFG----- 282 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEECTTSCEEEE--CHHHHTCC-----
T ss_pred hcCCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEEECCCCEecC--cccHHHhh-----
Confidence 458999999999999999999999998742 688998765 42 23345788888765332 24555531
Q ss_pred hcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhc
Q 023126 153 RRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVG 198 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~ 198 (287)
.++.+.....+.+.++++.++ ...+.....+| ||+||+++|.+++
T Consensus 283 l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 111111112233455565555 34567788999 9999999966543
No 103
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.34 E-value=5.6e-13 Score=124.88 Aligned_cols=161 Identities=13% Similarity=0.009 Sum_probs=87.7
Q ss_pred CCCccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc--ccccCCCC--C
Q 023126 48 AQPVFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQVK--P 122 (287)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G--~i~~~~~~--~ 122 (287)
...++++.+++++|+.+.++ +++ +.| +|+|+||||||||+++|+|... |+.| .+...... .
T Consensus 8 ~~~~l~~~~l~~~y~~~~vl-----~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~ 73 (418)
T 2qag_C 8 LEGYVGFANLPNQVYRKSVK-----RGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQ 73 (418)
T ss_dssp -------CCCCCCTTTTTCC------CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCE
T ss_pred CcCcEEEEecceeECCEEEe-----cCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCcccee
Confidence 34578999999999987777 887 765 9999999999999999999876 5544 22221111 1
Q ss_pred CceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCcc
Q 023126 123 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 202 (287)
Q Consensus 123 ~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~ 202 (287)
...+++++|+..... .+++++++.+...... ...+..+.+.++. .++.+++||++++++++.+++
T Consensus 74 ~~~i~~v~q~~~~~~--~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~~----------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 74 VEQSKVLIKEGGVQL--LLTIVDTPGFGDAVDN---SNCWQPVIDYIDS----------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp EEEEECC------CE--EEEEEECC--------------CHHHHHHHHH----------HHHHHTTTSCC-CCCCCCCC-
T ss_pred eeeEEEEEecCCccc--ceeeeechhhhhhccc---hhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCC
Confidence 123677777644322 3789999876543211 1112223222221 344567889999999999999
Q ss_pred ---EEEEcCcc-cCCChhhHHHHHHhhcC--ceEEEeCHHH
Q 023126 203 ---VVIVDGNY-LFLDGGVWKDVSSMFDE--KWFIEVDLDT 237 (287)
Q Consensus 203 ---~li~d~~~-lllDe~~~~~l~~~~~~--~i~vtHd~~~ 237 (287)
+|++++++ ..+|+.-...+..+... +|+|.|-.+.
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTS
T ss_pred eeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccC
Confidence 89999998 57887433444444332 3566665543
No 104
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.32 E-value=7.2e-12 Score=110.98 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=86.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC-CceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~-~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
.+.+|++++|+||||||||||++.+++.+. .|.++.+.... ...+.|+..+.. . +.+.......+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~~~~~v~~~~~e~~--------~-~~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGELPTGPVIYLPAEDP--------P-TAIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCCCCCCEEEEESSSC--------H-HHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccCCCccEEEEECCCC--------H-HHHHHHHHHHH
Confidence 478999999999999999999999999764 35554432111 223566554321 1 11111111111
Q ss_pred CCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc--CCCh-------hhHHHHHHh
Q 023126 156 APWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDG-------GVWKDVSSM 224 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l--llDe-------~~~~~l~~~ 224 (287)
. ........++++.+. ...+.++..||+|+.|++ .+++.+++++++|++.. .+|+ .+++.|.++
T Consensus 92 ~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l 166 (279)
T 1nlf_A 92 A--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAI 166 (279)
T ss_dssp T--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHH
T ss_pred h--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHH
Confidence 1 112233445566655 334567889999997765 45667899999999998 6676 234445544
Q ss_pred hc----CceEEEeCHHHH
Q 023126 225 FD----EKWFIEVDLDTA 238 (287)
Q Consensus 225 ~~----~~i~vtHd~~~~ 238 (287)
.. .+|+++|+....
T Consensus 167 ~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 167 AADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHCCEEEEEEEC----
T ss_pred HHHcCCEEEEEecCCCcc
Confidence 32 246899998765
No 105
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.32 E-value=3.2e-13 Score=116.77 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=32.3
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH--HHhcccCCCCcccccC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDS 118 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~--G~l~~~~p~~G~i~~~ 118 (287)
.+++|++++|+||||||||||+++|+ |++. +..|.+++.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~---~~~~~~~~~ 66 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEE
Confidence 69999999999999999999999999 7645 555554443
No 106
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.31 E-value=2.1e-12 Score=117.81 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=47.2
Q ss_pred CCCCCCCCcccCC------chhhhhhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHH
Q 023126 177 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDT 237 (287)
Q Consensus 177 ~~~~~~lSgG~~q------rv~ia~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~ 237 (287)
++++..||||||| |+++|++++.+|++|++|+|+..||+. +++.+.++.. ..+++|||.+.
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 3467799999999 567777888899999999999999983 4445555443 24689999664
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.30 E-value=5.4e-14 Score=120.17 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=28.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|++++|+||||||||||+++|+|.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999999999776
No 108
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.30 E-value=1e-13 Score=140.85 Aligned_cols=125 Identities=13% Similarity=0.089 Sum_probs=77.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+++|++++|+||||||||||+|+++++.-- +..|. +++.... .+...+.+
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~-------------~vpa~~~-----~i~~~d~i---- 719 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGS-------------YVPAEEA-----TIGIVDGI---- 719 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTC-------------CBSSSEE-----EEECCSEE----
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCc-------------cccchhh-----hhhHHHHH----
Confidence 677 88999999999999999999999999876430 11111 1111100 00000000
Q ss_pred HhcCCCCCchHHHHHHHHHHhc--cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----hhH-HHHHHh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVW-KDVSSM 224 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~~~-~~l~~~ 224 (287)
+..++ +.......++|+||+|++.++.+ +.++.++++||++..+|+ .+. ..+..+
T Consensus 720 -----------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L 781 (918)
T 3thx_B 720 -----------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYF 781 (918)
T ss_dssp -----------------EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred -----------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 00111 11223456889999999998776 778999999999999998 232 334444
Q ss_pred hc----CceEEEeCHHHHH
Q 023126 225 FD----EKWFIEVDLDTAM 239 (287)
Q Consensus 225 ~~----~~i~vtHd~~~~~ 239 (287)
.. .++++||+++.+.
T Consensus 782 ~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 782 IRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHTTCCEEEEECSCGGGGG
T ss_pred HHhcCCeEEEEeCcHHHHH
Confidence 22 2469999998764
No 109
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.28 E-value=3.7e-12 Score=113.63 Aligned_cols=148 Identities=11% Similarity=-0.041 Sum_probs=79.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-cccc-CCCCCC----ceeEEEeCCCCCCCcccCCccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQVKPP----DVATVLPMDGFHLYLSQLDAME 145 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G-~i~~-~~~~~~----~~i~~v~qd~~~~~~~~ltv~e 145 (287)
+++ +.+++|++++|+|+||||||||++.|+|.+. |++| .+.+ +..... .++..+.++. .+...+
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~------~~~~~~ 96 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLAMLEESVEETAEDLIGLHNRV------RLRQSD 96 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEEESSSCHHHHHHHHHHHHTTC------CGGGCH
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC------Chhhcc
Confidence 666 8899999999999999999999999999998 8877 4422 111100 0000001000 001111
Q ss_pred cHHHHHHhcCCCCCchHH-HHHHHHHHhccCCCCCCCCCCccc-CCchhhhhhhccCccEEEEcCcccCC------Ch--
Q 023126 146 DPKEAHARRGAPWTFNPL-LLLNCLKNLRNQGSVYAPSFDHGV-GDPVEDDILVGLQHKVVIVDGNYLFL------DG-- 215 (287)
Q Consensus 146 ~i~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~~lSgG~-~qrv~ia~al~~~a~~li~d~~~lll------De-- 215 (287)
++.... .. ..+.. .+.++++.........+..+|.++ +|++. ++++..+++++++|++..++ |.
T Consensus 97 ~l~~~~----~~-~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~ 170 (296)
T 1cr0_A 97 SLKREI----IE-NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERK 170 (296)
T ss_dssp HHHHHH----HH-HTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CH
T ss_pred ccccCC----CC-HHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHH
Confidence 111110 00 01111 122222211111122335678887 56665 78888999999999999854 32
Q ss_pred ---hhHHHHHHhhc----CceEEEeCH
Q 023126 216 ---GVWKDVSSMFD----EKWFIEVDL 235 (287)
Q Consensus 216 ---~~~~~l~~~~~----~~i~vtHd~ 235 (287)
.+++.|+++.. .+|+++|+.
T Consensus 171 ~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 171 MIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 24444544432 246889995
No 110
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.28 E-value=1.1e-12 Score=118.03 Aligned_cols=114 Identities=11% Similarity=-0.047 Sum_probs=76.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc---CCCCCC--------ceeEEEeCCCCCC--Cc-ccC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL--YL-SQL 141 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~---~~~~~~--------~~i~~v~qd~~~~--~~-~~l 141 (287)
+.+..|++++|+||||||||||+++|+ ++. |++|+|.+ .|.... ..+++++|++... .. +.+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l 235 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV 235 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence 567789999999999999999999999 988 99999988 664321 1378999987432 11 347
Q ss_pred CccccH--HHH----H--HhcCC-CCCchHHHHHHHHHHhccC---CCCCCCCCCcccCCchhhh
Q 023126 142 DAMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD 194 (287)
Q Consensus 142 tv~e~i--~~~----~--~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lSgG~~qrv~ia 194 (287)
|+ +++ .+. . ...+. ...+...++.++++.++.. .+.++..|||.+++++.+|
T Consensus 236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 776 332 1 12222 2333445678888888743 3556778998777777773
No 111
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.26 E-value=2.6e-13 Score=112.24 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=60.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCC---CcccccCCCCCC------------ceeE----EEeCCCCCCCcccCC
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP------------DVAT----VLPMDGFHLYLSQLD 142 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~~~~p~---~G~i~~~~~~~~------------~~i~----~v~qd~~~~~~~~lt 142 (287)
++++|+|+||||||||++.|+|++. |+ .|.|.+++.... ..++ +++|+.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i----- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI----- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE-----
Confidence 5899999999999999999999999 88 798888775411 1133 4555433211
Q ss_pred ccccHHHHHHhcCCCCCchHHHHHHHHHH-hccCCCCCC-CCCCcccCCchhhhhhhccCccE
Q 023126 143 AMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYA-PSFDHGVGDPVEDDILVGLQHKV 203 (287)
Q Consensus 143 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~-~~lSgG~~qrv~ia~al~~~a~~ 203 (287)
.+ ........+.+.+.. +. ..+..+ ..|||||+||+++|+++..++.+
T Consensus 75 -~~-----------~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 75 -RR-----------VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp -EE-----------CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred -ec-----------CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 00 000000123444444 43 222222 25999999999998887666543
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.23 E-value=9.8e-12 Score=114.18 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=70.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CcccccCCCCCC----ceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPP----DVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-~G~i~~~~~~~~----~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
...+|++++|+||||||||||+++|+|+++ |+ +|.+...+.... ...+++.|...
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~----------------- 178 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHILTIEDPIEFVHESKKCLVNQREV----------------- 178 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCSSSEEEEEEB-----------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEEEEccCcHHhhhhccccceeeeee-----------------
Confidence 467888999999999999999999999998 77 444322111100 00011111100
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcC---c
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE---K 228 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~---~ 228 (287)
+. . .++..+ ++++++..+|+++++||+. |++.++.+.+.... +
T Consensus 179 ---~~-~-----------------------~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~~G~~v 224 (356)
T 3jvv_A 179 ---HR-D-----------------------TLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAAETGHLV 224 (356)
T ss_dssp ---TT-T-----------------------BSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHHTTCEE
T ss_pred ---cc-c-----------------------cCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHhcCCEE
Confidence 00 0 000000 7888889999999999997 87777776665543 3
Q ss_pred eEEEeCHHHHHH
Q 023126 229 WFIEVDLDTAMQ 240 (287)
Q Consensus 229 i~vtHd~~~~~~ 240 (287)
++++|+.+.+..
T Consensus 225 l~t~H~~~~~~~ 236 (356)
T 3jvv_A 225 FGTLHTTSAAKT 236 (356)
T ss_dssp EEEESCSSHHHH
T ss_pred EEEEccChHHHH
Confidence 588999987733
No 113
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.22 E-value=2.7e-13 Score=112.83 Aligned_cols=130 Identities=16% Similarity=0.052 Sum_probs=72.2
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC------CceeEEEeCCCCCCCcccCCccccHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKE 149 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~------~~~i~~v~qd~~~~~~~~ltv~e~i~~ 149 (287)
..+++|++++|+||||||||||+++|+|. |+.|.+.+++... ...++|++|+.. ...++.+++.+
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~ 74 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAAD 74 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHH
Confidence 35789999999999999999999999995 5678777665421 112344444321 12566677655
Q ss_pred HHHhcCC-CCCchHHHHH--HHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHH
Q 023126 150 AHARRGA-PWTFNPLLLL--NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (287)
Q Consensus 150 ~~~~~~~-~~~~~~~~~~--~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~ 223 (287)
....... ......+.+. ..++.+.. .+.++..+|+|++|++++++++..++++ + +|+...+.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ls~~~~~~v~~~R~~~r~~~~-------l-ld~~~~~~~~~ 142 (191)
T 1zp6_A 75 VAGRYAKEGYFVILDGVVRPDWLPAFTA-LARPLHYIVLRTTAAEAIERCLDRGGDS-------L-SDPLVVADLHS 142 (191)
T ss_dssp HHHHHHHTSCEEEECSCCCTTTTHHHHT-TCSCEEEEEEECCHHHHHHHHHTTCTTS-------C-CCHHHHHHHHH
T ss_pred HHHHHhccCCeEEEeccCcHHHHHHHHh-cCCCeEEEEecCCHHHHHHHHHhcCCCc-------c-CCHHHHHHHHH
Confidence 3321100 0000000000 00011110 1334458999999999998877655433 2 57654444443
No 114
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.21 E-value=4.4e-13 Score=111.65 Aligned_cols=157 Identities=10% Similarity=-0.091 Sum_probs=73.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--ceeEEEeCCCCCCCcccCCccccHHHHHHhcCCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 158 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~~ 158 (287)
|++++|+||||||||||+++|++ |.+|.+++++.... ...+++++... .....++++++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999999999987 55676665542210 11233333321 1112345555544322211000
Q ss_pred -CchHHHH--HHHHHHhccCCCCCCCCC--CcccCCchhhhh------hhccCccEEEEcCcccCCChhh---HHHHHHh
Q 023126 159 -TFNPLLL--LNCLKNLRNQGSVYAPSF--DHGVGDPVEDDI------LVGLQHKVVIVDGNYLFLDGGV---WKDVSSM 224 (287)
Q Consensus 159 -~~~~~~~--~~~l~~l~~~~~~~~~~l--SgG~~qrv~ia~------al~~~a~~li~d~~~lllDe~~---~~~l~~~ 224 (287)
....+.+ ...++ .+..+ |+||+|++.++. ++...++....|+ .+|+.. ++.+..+
T Consensus 74 ~~~ild~~~~~~~~~--------~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~~~~~~~~ 142 (189)
T 2bdt_A 74 NDVVLDYIAFPDEAE--------ALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLELVEEFESK 142 (189)
T ss_dssp CEEEEESCCCHHHHH--------HHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHHHHHHHHT
T ss_pred CcEEEeeccCHHHHH--------HHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHHHHHHhhc
Confidence 0000000 00000 01123 889998887754 3333332222221 234422 4555555
Q ss_pred hcC--c-eEEEeC-HHHHHH---HHh--hccccCCChHHHH
Q 023126 225 FDE--K-WFIEVD-LDTAMQ---RVL--KRHISTGKPPDVA 256 (287)
Q Consensus 225 ~~~--~-i~vtHd-~~~~~~---rv~--gr~v~~G~~~ev~ 256 (287)
... . |..||. ++.+.+ +++ |+++..|+++-+-
T Consensus 143 ~~~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 143 GIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPLE 183 (189)
T ss_dssp TCCTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC-------
T ss_pred CCCccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCchh
Confidence 332 3 455787 655544 666 8999999876653
No 115
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.20 E-value=1.9e-12 Score=117.62 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=51.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCc--------------eeEEEeCCCCCCCcccCCc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLYLSQLDA 143 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~--------------~i~~v~qd~~~~~~~~ltv 143 (287)
.++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .+.+++|.... .+.+++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~--~p~~~v 200 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA--DPAAVA 200 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC--CHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC--CHHHHH
Confidence 36899999999999999999999999999 999998876654321 14467766332 223677
Q ss_pred cccHHHHH
Q 023126 144 MEDPKEAH 151 (287)
Q Consensus 144 ~e~i~~~~ 151 (287)
++|+.+..
T Consensus 201 ~e~l~~~~ 208 (328)
T 3e70_C 201 YDAIQHAK 208 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 116
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.18 E-value=1.3e-12 Score=120.37 Aligned_cols=42 Identities=21% Similarity=0.302 Sum_probs=37.8
Q ss_pred Ccc-ceecC--CeEEEEECCCCCCHHHHHHHHHHHhcccCCCC----ccccc
Q 023126 73 REI-PVVEA--RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASSFD 117 (287)
Q Consensus 73 ~~~-~~i~~--GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~----G~i~~ 117 (287)
+.+ +.|.+ |++++|+|+||||||||+++|+|+++ |++ |++.+
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i 207 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFV 207 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHH
Confidence 445 78999 99999999999999999999999999 998 87765
No 117
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.17 E-value=6.6e-12 Score=105.63 Aligned_cols=156 Identities=11% Similarity=0.028 Sum_probs=75.4
Q ss_pred ccccCcccccccccchhhhhhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCcccccCCCCC-Cc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP-PD 124 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l-----~~~~p~~G~i~~~~~~~-~~ 124 (287)
+++++++++.|+. ..+ ++ +.+.+|.+++|+|+||||||||++.|+|.. . |+.|.+...+... ..
T Consensus 3 ~l~~~~~~~~~~~-~~l-----~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~~ 72 (210)
T 1pui_A 3 NLNYQQTHFVMSA-PDI-----RH-LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVAD 72 (210)
T ss_dssp --------CEEEE-SSG-----GG-SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEET
T ss_pred chhhhhhhheeec-CCH-----hH-CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEecC
Confidence 5788999999973 334 44 889999999999999999999999999987 6 8888765421000 00
Q ss_pred eeEEEeCCCCCCCcccCCc----cccHHHHHHhc----------C--CCCCchHHHHHHHHHHhccC---CCCCCCCCCc
Q 023126 125 VATVLPMDGFHLYLSQLDA----MEDPKEAHARR----------G--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH 185 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv----~e~i~~~~~~~----------~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~lSg 185 (287)
...++...++......... ...+....... . .+.......+.+++...+.. ...++..+|+
T Consensus 73 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 73 GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 0111111111000000000 00111111100 0 01111222344444443311 1234557899
Q ss_pred ccCCc-hhhhhhhccCccEEEEcCcccCCChh
Q 023126 186 GVGDP-VEDDILVGLQHKVVIVDGNYLFLDGG 216 (287)
Q Consensus 186 G~~qr-v~ia~al~~~a~~li~d~~~lllDe~ 216 (287)
||+|+ +..+.+++..+..++.++++..+|..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~ 184 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGDVQVETFSSLKKQ 184 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSCEEEEECBTTTTB
T ss_pred hhHHHHHHHHHHHHHhcCCCCceEEEeecCCC
Confidence 99998 67777777666666778888888873
No 118
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.17 E-value=3.5e-11 Score=104.99 Aligned_cols=184 Identities=24% Similarity=0.361 Sum_probs=107.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH---HhcCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGAP 157 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~---~~~~~~ 157 (287)
.-+++|.|+.||||||+++.|+..+...+.+ .....+.+++.|.++.. +. ...+.... ..+..+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d---------~~~~~~~~i~~D~~~~~---~~-~~~~~~~~~g~~~f~~~ 88 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRV---LT-SEQKAKALKGQFNFDHP 88 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSC---------GGGCSEEEEEGGGGBCC---CC-HHHHHHHHTTCSCTTSG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhccc---------ccCCceEEEecCccccc---cC-hhhhhhhccCCCCCCCc
Confidence 3589999999999999999999876511001 01122557888876432 11 11111111 012234
Q ss_pred CCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHH
Q 023126 158 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDT 237 (287)
Q Consensus 158 ~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~ 237 (287)
...+.+.+.+.|+.+........+.|+.....++.-.. ......++|+|+.+++.++ .+.+.++.+|+++.+.+.
T Consensus 89 ~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~-~~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~~~e~ 163 (252)
T 1uj2_A 89 DAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDTDADT 163 (252)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH----HHHHHCSEEEEEECCHHH
T ss_pred chhhHHHHHHHHHHHHcCCeeecCccccccccCCCcee-eeCCCcEEEEeeeccccCH----HHHHhcCeeEEEeCCHHH
Confidence 45566666677776643322222222211111111000 1123578999998876663 345567778999999999
Q ss_pred HHHHHhhcc-ccCCChHHHHHHHHHhcCcchHH-HHhhcCCCccEEe
Q 023126 238 AMQRVLKRH-ISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 282 (287)
Q Consensus 238 ~~~rv~gr~-v~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~i~ 282 (287)
..+|+..|. ...|...+.+...+.....+.+. ++.|.+..||+++
T Consensus 164 ~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 164 RLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred HHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 988887653 34465555555555544444444 7888899999998
No 119
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.15 E-value=9.1e-12 Score=104.59 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=26.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+|++++|+||||||||||+++|+|+++
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567899999999999999999999999863
No 120
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.15 E-value=3.2e-11 Score=101.82 Aligned_cols=136 Identities=15% Similarity=0.292 Sum_probs=79.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+.+|.+++|+|++||||||+++.|++.++ .+.++++|++......++.... ....+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~~~~~~~~~~~---~~~~~~ 74 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFKPESEIETDKN---GFLQYD 74 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBCCGGGSCBCTT---SCBCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCccccCHhHhhcccc---CCChhH
Confidence 6789999999999999999999999999772 1788999977544321111000 000001
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCH
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~ 235 (287)
.....+...+.+.+..+-... ..+.++.++++ ..+.+++++|+.++.-++. +.+..+..++++-+.
T Consensus 75 ~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~~~~ 140 (207)
T 2qt1_A 75 VLEALNMEKMMSAISCWMESA--RHSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLTIPY 140 (207)
T ss_dssp SGGGBCHHHHHHHHHHHHHHH--TTSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEECCH
T ss_pred HHHHhHHHHHHHHHHHHHhCC--CCCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEECCH
Confidence 111223333333322221110 12245566554 2346789999977665533 234566778999999
Q ss_pred HHHHHHHhhcc
Q 023126 236 DTAMQRVLKRH 246 (287)
Q Consensus 236 ~~~~~rv~gr~ 246 (287)
+....|+..|.
T Consensus 141 ~~~~~R~~~R~ 151 (207)
T 2qt1_A 141 EECKRRRSTRV 151 (207)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHcC
Confidence 99888776553
No 121
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.14 E-value=2.3e-11 Score=123.94 Aligned_cols=125 Identities=13% Similarity=0.132 Sum_probs=73.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +.+.+|++++|+||||||||||+|++++..-- +..|. ++|.+... +...+.
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G~-------------~vpa~~~~-----~~~~d~----- 707 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIGC-------------FVPCESAE-----VSIVDC----- 707 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHTC-------------CBSEEEEE-----EECCSE-----
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcCC-------------cccccccc-----chHHHH-----
Confidence 777 88999999999999999999999999544210 12221 11111100 000000
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhh--ccCccEEEEcCcccCCCh----hh-HHHHHHh
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDG----GV-WKDVSSM 224 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al--~~~a~~li~d~~~lllDe----~~-~~~l~~~ 224 (287)
++..++. .+.....+|+++.++..++.++ +.++.++++||+...+|. .+ +..+..+
T Consensus 708 ----------------i~~~ig~-~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l 770 (934)
T 3thx_A 708 ----------------ILARVGA-GDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYI 770 (934)
T ss_dssp ----------------EEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHH
T ss_pred ----------------HHHhcCc-hhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 0001110 0111234667777777776666 888999999999999998 23 3334444
Q ss_pred hc----CceEEEeCHHHHH
Q 023126 225 FD----EKWFIEVDLDTAM 239 (287)
Q Consensus 225 ~~----~~i~vtHd~~~~~ 239 (287)
.+ .++++||+.+...
T Consensus 771 ~~~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 771 ATKIGAFCMFATHFHELTA 789 (934)
T ss_dssp HHTTCCEEEEEESCGGGGG
T ss_pred HhcCCCEEEEEcCcHHHHH
Confidence 32 2469999988654
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=115.03 Aligned_cols=159 Identities=9% Similarity=-0.042 Sum_probs=84.1
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCccccc--CCCCCCce
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD--SQVKPPDV 125 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~Gei--vgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~--~~~~~~~~ 125 (287)
.+++.+ ++.|+... + +++ +.+++|++ +||+||||||||||+++|+|+.- .|.... ........
T Consensus 16 ~l~~~~-~~~y~~~~-L-----~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-D-----QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQS 83 (427)
T ss_dssp -CCCCC-CC-CC--C-H-----HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEE
T ss_pred eEEEee-EEEECCee-c-----CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEee
Confidence 455666 88888766 6 788 99999999 99999999999999999999741 111100 00111235
Q ss_pred eEEEeCCCCCCCcccCCccccHHHHHHhcC-CCCCc----hHHHHHHHHHHh-ccC------CCCCCC-------CCCcc
Q 023126 126 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTF----NPLLLLNCLKNL-RNQ------GSVYAP-------SFDHG 186 (287)
Q Consensus 126 i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~-~~~~~----~~~~~~~~l~~l-~~~------~~~~~~-------~lSgG 186 (287)
++|++|+....+ .+|+.+++.++..... ..... ....+.+.+... +.. .+..+. ..+.|
T Consensus 84 i~~v~Q~~~l~~--~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRL--KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEE--EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCcccc--ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 889999855333 3788888765321000 00000 112233333332 111 111110 01111
Q ss_pred cCCc-hhhhhhhccCccEEEEcCcccCCCh----hhHHHHHH
Q 023126 187 VGDP-VEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSS 223 (287)
Q Consensus 187 ~~qr-v~ia~al~~~a~~li~d~~~lllDe----~~~~~l~~ 223 (287)
-..- +.++.++...+.+++++.+.-.+.+ .+.+.+++
T Consensus 162 l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 162 LKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp -CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 1111 4566777778899999999888765 34444554
No 123
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.13 E-value=6.4e-11 Score=108.98 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=41.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+++ +.+++|++++|+||||||||||+++|+|+++ |++|.|.+++.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 566 8999999999999999999999999999999 99999887653
No 124
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.12 E-value=3.2e-13 Score=117.50 Aligned_cols=123 Identities=13% Similarity=0.048 Sum_probs=75.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCcccccCCCCCC----ceeEEEeCCCCCCCcccCCccccHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDAMEDPKEAHA 152 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~---G~l~~~~p~~G~i~~~~~~~~----~~i~~v~qd~~~~~~~~ltv~e~i~~~~~ 152 (287)
++++++|+||||||||||+++|+ |+.. |+.|++.+.+.... ..+..++|++...+ ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 47899999999999999999999 8877 89999876542111 11233444433222 2566777765432
Q ss_pred h--------cCCCCCchHHHHHHHHH--Hhc--------------cCCCCCCCCCCcccCCchhhhhhh-ccCccEEEEc
Q 023126 153 R--------RGAPWTFNPLLLLNCLK--NLR--------------NQGSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 207 (287)
Q Consensus 153 ~--------~~~~~~~~~~~~~~~l~--~l~--------------~~~~~~~~~lSgG~~qrv~ia~al-~~~a~~li~d 207 (287)
. .+.+.. ...+..+.. .++ ...++.+..||| |+ +++ +.+|+++++|
T Consensus 101 ~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 1 122222 122222211 111 112455668898 55 344 7788999999
Q ss_pred ----CcccCCChh
Q 023126 208 ----GNYLFLDGG 216 (287)
Q Consensus 208 ----~~~lllDe~ 216 (287)
+++..+|+.
T Consensus 172 ~~~~EP~~~ld~~ 184 (246)
T 2bbw_A 172 DVTGEPLVQQEDD 184 (246)
T ss_dssp TTTCCBCBCCGGG
T ss_pred cccccccccCCCC
Confidence 999999873
No 125
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.11 E-value=3.7e-12 Score=117.08 Aligned_cols=77 Identities=14% Similarity=-0.016 Sum_probs=56.3
Q ss_pred CCCC-CCCcccCCchhhhhhhc---------cCccEEEEcCcccCCChh----hHHHHHHhhcCceEEEeCHHHHHHHHh
Q 023126 178 VYAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGG----VWKDVSSMFDEKWFIEVDLDTAMQRVL 243 (287)
Q Consensus 178 ~~~~-~lSgG~~qrv~ia~al~---------~~a~~li~d~~~lllDe~----~~~~l~~~~~~~i~vtHd~~~~~~rv~ 243 (287)
.++. .||+||+||+++|++++ ..+++|++|+++.-||+. +++.+.++....|++||+ +....+++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i~ 338 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALTL 338 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEEE
Confidence 4555 79999999999999999 899999999999999994 444444433334577784 43111333
Q ss_pred ----hccccCCChHHH
Q 023126 244 ----KRHISTGKPPDV 255 (287)
Q Consensus 244 ----gr~v~~G~~~ev 255 (287)
|++++.|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 788888887765
No 126
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.11 E-value=3.1e-11 Score=107.83 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=104.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCC-cccCCccccHHHHH----Hhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEAH----ARR 154 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~-~~~ltv~e~i~~~~----~~~ 154 (287)
++-++||.|++||||||+++.|+..+. . .| ..+.++.+|.++.. ...++ ..+..+. ..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg---~-~~----------~~~~vI~~D~~~r~~~~~~~--~~~~~~~~~g~~~~ 67 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR---R-EG----------VKAVSIEGDAFHRFNRADMK--AELDRRYAAGDATF 67 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH---H-HT----------CCEEEEEGGGGBSCCHHHHH--HHHHHHHHHTCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh---h-cC----------CCeeEeecchhhcCCHHHhh--hhhhhhhhccCcCc
Confidence 355899999999999999999998764 1 00 12678899987642 11110 0000000 112
Q ss_pred CC--CCCchHHHHHHHHHHhccCCCCCCCCCCc---------ccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHH
Q 023126 155 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 223 (287)
Q Consensus 155 ~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lSg---------G~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~ 223 (287)
.. +...+.+.+.+.+..+........+.|.. .......-...+.....+++.|+.+++... ....+.+
T Consensus 68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~ 146 (290)
T 1a7j_A 68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAG 146 (290)
T ss_dssp STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGG
T ss_pred CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHH
Confidence 22 33445556666666554322222222211 011111000011124679999999887320 0012455
Q ss_pred hhcCceEEEeCHHHHHHHHhhccc-cCCChHHHHHHHHHhcCcchHH-HHhhcCCCccE------EeccCC
Q 023126 224 MFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSID 286 (287)
Q Consensus 224 ~~~~~i~vtHd~~~~~~rv~gr~v-~~G~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD~------i~~~~~ 286 (287)
.++..||++.+.++...|++.|.+ ++|...+.+.+.+... .+.+. |+.|.+.+||+ ++++.+
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 677789999999999888886654 5575554333334333 55554 99999999999 777653
No 127
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.08 E-value=2.4e-10 Score=97.19 Aligned_cols=138 Identities=7% Similarity=-0.001 Sum_probs=74.8
Q ss_pred Ccc-c-eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH
Q 023126 73 REI-P-VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA 150 (287)
Q Consensus 73 ~~~-~-~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~ 150 (287)
|.+ . .+.+|++++|+||||||||||++.|++.+. +++|.+ .|+..+. +. +.+...
T Consensus 13 d~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v-----------~~~~~~~--------~~-~~~~~~ 69 (235)
T 2w0m_A 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPC-----------IYVTTEE--------SR-DSIIRQ 69 (235)
T ss_dssp HGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCE-----------EEEESSS--------CH-HHHHHH
T ss_pred HHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeE-----------EEEEccc--------CH-HHHHHH
Confidence 455 3 689999999999999999999999999887 665543 3333321 11 111111
Q ss_pred HHhcCCCCCchHHHHHHHHHHhccC-----CCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCC--Ch----hh
Q 023126 151 HARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DG----GV 217 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lll--De----~~ 217 (287)
....+........ ..+..+... ........|.++.++...+.+...+++ ++++|++..++ |+ .+
T Consensus 70 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~ 146 (235)
T 2w0m_A 70 AKQFNWDFEEYIE---KKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI 146 (235)
T ss_dssp HHHTTCCCGGGBT---TTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred HHHhcchHHHHhh---CCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence 1111111100000 000000000 001112347777666666555556788 99999999777 86 34
Q ss_pred HHHHHHhhc----CceEEEeCHH
Q 023126 218 WKDVSSMFD----EKWFIEVDLD 236 (287)
Q Consensus 218 ~~~l~~~~~----~~i~vtHd~~ 236 (287)
++.+.++.. .+++++|+..
T Consensus 147 ~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 147 SYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHHHhCCCeEEEEeccCc
Confidence 455554432 2468899983
No 128
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.08 E-value=2.1e-11 Score=106.68 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=32.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCcccc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSF 116 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~---G~l~~~~p~~G~i~ 116 (287)
.+|++++|+|||||||||++++|+ |+.. +++|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCcee
Confidence 678999999999999999999999 7776 9999987
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.08 E-value=4.7e-11 Score=113.36 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=59.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCC--------------ceeEEEeCCCCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLY 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~--------------~~i~~v~qd~~~~~ 137 (287)
+++ +.+.+|++++|+|+||||||||+++|+|++. |++|+|.+.+.+.. ..++|++|+....
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~- 359 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD- 359 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC-
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC-
Confidence 455 7899999999999999999999999999999 99999988654321 2378899875432
Q ss_pred cccCCccccHHHHHH
Q 023126 138 LSQLDAMEDPKEAHA 152 (287)
Q Consensus 138 ~~~ltv~e~i~~~~~ 152 (287)
+.+++++++.+...
T Consensus 360 -p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 -SASVIFDAIQAAKA 373 (503)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHh
Confidence 23688888887643
No 130
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.08 E-value=2.9e-12 Score=123.01 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=40.4
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+.+ +.+++|++++|+||||||||||+++|+|+++ |++|.+.+.+.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~ 296 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESS
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCc
Confidence 455 7789999999999999999999999999999 99999877664
No 131
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.07 E-value=3.7e-11 Score=120.80 Aligned_cols=126 Identities=12% Similarity=0.125 Sum_probs=71.3
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 151 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~ 151 (287)
+++ +. ++|++++|+||||||||||+|+|+|+.-. ...|..... ....++++++ .+ ..+++.+++...
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vpa---~~~~i~~~~~----i~-~~~~~~d~l~~~- 666 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVPA---QKVEIGPIDR----IF-TRVGAADDLASG- 666 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCCE----EE-EEEC---------
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccch---hcccceeHHH----HH-hhCCHHHHHHhh-
Confidence 666 77 89999999999999999999999998531 233321100 0011222221 01 113333333221
Q ss_pred HhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh----h-hHHHHHHhhc
Q 023126 152 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G-VWKDVSSMFD 226 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe----~-~~~~l~~~~~ 226 (287)
...+|.+|++ ++.+...+.++.++++||+...+|. . .+..+..+.+
T Consensus 667 ----------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 667 ----------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp -------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred ----------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 1234555543 2333345678999999999888886 2 2445555543
Q ss_pred ----CceEEEeCHHHHH
Q 023126 227 ----EKWFIEVDLDTAM 239 (287)
Q Consensus 227 ----~~i~vtHd~~~~~ 239 (287)
.++++||+.+...
T Consensus 718 ~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQ 734 (800)
T ss_dssp TTCCEEEEECSCGGGGG
T ss_pred ccCCeEEEEeCCHHHHH
Confidence 2469999998653
No 132
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=5.4e-11 Score=106.78 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=58.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc---CCCCCC--------ceeEEEeCCCCCC--------
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL-------- 136 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~---~~~~~~--------~~i~~v~qd~~~~-------- 136 (287)
+.+..|++++|+||||||||||+++|+|++. |++|+|.+ +|.... ..+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 5678899999999999999999999999999 99999987 554321 1378899886421
Q ss_pred ------CcccCCccccHHHHHHhcCCCCCchHHHHHHHHHHhcc
Q 023126 137 ------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN 174 (287)
Q Consensus 137 ------~~~~ltv~e~i~~~~~~~~~~~~~~~~~~~~~l~~l~~ 174 (287)
..+++++ +|+.+... ....+...++.++|+.++.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~---~~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDC---NHVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTC---CSSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHHHHhccc-ccCcCCCC---cCCCCCCcHHHHHHHcCCC
Confidence 1235777 88776421 1122334567777777764
No 133
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.05 E-value=7.2e-12 Score=113.98 Aligned_cols=131 Identities=13% Similarity=-0.019 Sum_probs=78.7
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCC-------eEEEEECCCCCCHHHHHHHHHHHh----cccCCCCcccccC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEAR-------HIVGLAGPPGAGKSTLAAEVVRRI----NKIWPQKASSFDS 118 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~G-------eivgIiG~nGsGKSTLlk~L~G~l----~~~~p~~G~i~~~ 118 (287)
.++.+++...+|...++ +.+ +.+++| +.++|.||||+|||||+++|+|.+ . +++|.+...
T Consensus 18 ~lr~~~l~~~~g~~~~~-----~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~~~~ 89 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVK-----KKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPVLVK 89 (334)
T ss_dssp TTSCSSGGGCCSCHHHH-----HHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTTCCS
T ss_pred HcCCccHHHccCcHHHH-----HHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechHhcC
Confidence 45666777777766555 555 556655 789999999999999999999998 5 778877654
Q ss_pred CCC--------CCceeEEEeCCCCCCCcccCCccccHHHHHHhcCCC----CCchHHHHHHHHHHhc-cCCCCCCCCCCc
Q 023126 119 QVK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----WTFNPLLLLNCLKNLR-NQGSVYAPSFDH 185 (287)
Q Consensus 119 ~~~--------~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~~----~~~~~~~~~~~l~~l~-~~~~~~~~~lSg 185 (287)
+.+ ....+.++++.+.. . .++.+++......++.. .......+...+..+. .....++..||+
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l-~---~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~ 165 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRL-N---KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS 165 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGC-C---HHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHccCCCEEEEcchhhc-C---HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCH
Confidence 321 12347788776432 1 14556554333333211 1111222333343343 224556679999
Q ss_pred ccCCchhh
Q 023126 186 GVGDPVED 193 (287)
Q Consensus 186 G~~qrv~i 193 (287)
|++||+.+
T Consensus 166 ~l~sR~~l 173 (334)
T 1in4_A 166 PLRSRFGI 173 (334)
T ss_dssp HHHTTCSE
T ss_pred HHHHhcCc
Confidence 99999876
No 134
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.05 E-value=1.2e-13 Score=125.16 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=32.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh--------cccCCCCcccccCCC
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKASSFDSQV 120 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l--------~~~~p~~G~i~~~~~ 120 (287)
=++++|+|+||||||||++.|.|+. . |+.|++.+++.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~ 48 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEE
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHH
Confidence 3689999999999999999999986 6 89999887764
No 135
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.04 E-value=5.5e-12 Score=115.64 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=67.3
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCC----cc-cccCCCCC--CceeEEEeCCCCCCCcccCCcccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS-SFDSQVKP--PDVATVLPMDGFHLYLSQLDAMED 146 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l--~~~~p~~----G~-i~~~~~~~--~~~i~~v~qd~~~~~~~~ltv~e~ 146 (287)
..+++|++++|+||||||||||++.|++.. + |++ |. +++++... ...+++++|... ++. -++.+|
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~-~~~--~~v~~n 199 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG-LDP--DEVLKH 199 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT-CCH--HHHGGG
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC-CCH--HHHhhC
Confidence 569999999999999999999999999998 5 666 45 55555432 123444555422 111 134444
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCCh
Q 023126 147 PKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 215 (287)
Q Consensus 147 i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe 215 (287)
+.+.. . .......+.++.+. ..+.+||+|| .+++++++|++..++|.
T Consensus 200 i~~~~-----~--~~~~~~~~~l~~~~----~~~~~lS~G~-----------~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 200 IYVAR-----A--FNSNHQMLLVQQAE----DKIKELLNTD-----------RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp EEEEE-----C--CSHHHHHHHHHHHH----HHHHHSSSSS-----------SCEEEEEEETSSTTHHH
T ss_pred EEEEe-----c--CChHHHHHHHHHHH----HHHHHhcccc-----------CCCCEEEEeCchHhhhh
Confidence 43210 0 01111112222111 1123577777 45899999999999986
No 136
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.03 E-value=2.9e-10 Score=105.02 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=34.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-Cccccc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFD 117 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~-~G~i~~ 117 (287)
.+++|++++|+||||||||||+++|+|+++ |+ +|.|..
T Consensus 132 ~~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~ 170 (372)
T 2ewv_A 132 CHRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIIT 170 (372)
T ss_dssp TTSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEE
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEE
Confidence 378999999999999999999999999998 87 788754
No 137
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.00 E-value=2.4e-10 Score=108.52 Aligned_cols=45 Identities=24% Similarity=0.161 Sum_probs=42.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
+++ +.+++ +++||+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 66 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTT
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 677 99999 9999999999999999999999999 999999998754
No 138
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.99 E-value=6.2e-11 Score=108.09 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=54.9
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
+++.+++++.|+.+.++ +++ +.+.+|++++|+|+||||||||+++|+|++. |++|++.+.+
T Consensus 29 ~ie~~~~~~~~~~~~~l-----~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~ 90 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLI-----DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLA 90 (337)
T ss_dssp HHTCSSHHHHHHHHHHH-----HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEE
T ss_pred HHeeCCcccccChHHHH-----HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEE
Confidence 68899999999877666 777 8999999999999999999999999999999 9999986654
No 139
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.99 E-value=9e-12 Score=112.09 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=59.3
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc---CCCCCC------ce-eEEEeCCCCCCCcc--c
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP------DV-ATVLPMDGFHLYLS--Q 140 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~---~~~~~~------~~-i~~v~qd~~~~~~~--~ 140 (287)
+.++.+.+|++++|+|+||||||||+++|+|.+. |++|+|.+ .|.... .. +++++|.+...... .
T Consensus 165 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~ 241 (307)
T 1t9h_A 165 ADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTD 241 (307)
T ss_dssp TTTGGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcccccHHHHhhcCCEEEecCCCcccccccc
Confidence 3347788999999999999999999999999999 99999886 443221 11 68899886543321 3
Q ss_pred CCccccHH--HHH-H-h------cCC-CCCchHHHHHHHHHHhccCC--CCCCCCCCcccCC
Q 023126 141 LDAMEDPK--EAH-A-R------RGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 189 (287)
Q Consensus 141 ltv~e~i~--~~~-~-~------~~~-~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~q 189 (287)
+++ +++. +.. . . .+. ...+....+.++++.++... ......++.|++|
T Consensus 242 lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 242 IEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp CCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred CCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 567 7763 221 1 1 111 12223345677777766422 2233445555544
No 140
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.93 E-value=3.2e-10 Score=115.15 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=71.9
Q ss_pred HHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccCcc--EEEEcCcccCCCh----hhHHHHHHhhc---CceEEE
Q 023126 165 LLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIE 232 (287)
Q Consensus 165 ~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~a~--~li~d~~~lllDe----~~~~~l~~~~~---~~i~vt 232 (287)
..+.|..++. ..++++.+|||||+||++||++++.++. ++++|||+..||+ .+++.++++.+ .+|+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3455666663 2467888999999999999999998666 9999999999998 44555555544 246999
Q ss_pred eCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 233 VDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 233 Hd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
||++++.. |++ |++++.|+++++..
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99998765 443 57888999998754
No 141
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.92 E-value=1.6e-10 Score=117.11 Aligned_cols=115 Identities=17% Similarity=0.126 Sum_probs=83.2
Q ss_pred CCccccHHHHHHhcCCCCC----------chHHHHHHHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC--ccEEE
Q 023126 141 LDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVI 205 (287)
Q Consensus 141 ltv~e~i~~~~~~~~~~~~----------~~~~~~~~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~--a~~li 205 (287)
+|+.+++.|. .+.+.+.. +..+++ +.|..++. ..++++.+|||||+||++||.++..+ ++++|
T Consensus 452 ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llI 529 (972)
T 2r6f_A 452 MSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYV 529 (972)
T ss_dssp SBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEE
T ss_pred CCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence 7888888884 44444431 112232 44667773 25788899999999999999999987 49999
Q ss_pred EcCcccCCCh----hhHHHHHHhhc---CceEEEeCHHHHHH--HHh----------hccccCCChHHHHH
Q 023126 206 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 206 ~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
+|||+..||+ .+++.|+++.+ .+|+|+||++++.. |++ |++++.|+++++..
T Consensus 530 LDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 530 LDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 9999999998 45555555544 35799999998654 443 47788888887643
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.92 E-value=1.6e-11 Score=108.88 Aligned_cols=41 Identities=34% Similarity=0.367 Sum_probs=33.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 120 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~ 120 (287)
+++ +.+.+| ++|.||||||||||+++|+|.+. + |.+.+++.
T Consensus 37 ~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~ 78 (274)
T 2x8a_A 37 KALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGP 78 (274)
T ss_dssp HHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETT
T ss_pred HHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcH
Confidence 566 778888 89999999999999999999987 5 45555543
No 143
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.87 E-value=2.6e-10 Score=115.88 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=70.4
Q ss_pred HHHHHhcc---CCCCCCCCCCcccCCchhhhhhhccC--ccEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeC
Q 023126 167 NCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVD 234 (287)
Q Consensus 167 ~~l~~l~~---~~~~~~~~lSgG~~qrv~ia~al~~~--a~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd 234 (287)
+.|..++. ..++++.+|||||+||++||.++..+ ++++|+|||+..||+ .+++.|+++.+ .+|+|+||
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 34566663 35788899999999999999999987 589999999999998 44555555543 35799999
Q ss_pred HHHHHH--HHh----------hccccCCChHHHHH
Q 023126 235 LDTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 235 ~~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
++++.. |++ |++++.|+++++..
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 998654 433 57888899988765
No 144
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=2.2e-08 Score=83.88 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=26.0
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++ +.+.+|++++|+|++||||||+++.|++.+.
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 777 8999999999999999999999999999886
No 145
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.83 E-value=6.5e-09 Score=87.75 Aligned_cols=102 Identities=18% Similarity=0.117 Sum_probs=61.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 156 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~ 156 (287)
.+++|++++|+|+||||||||++.|++ . +.. .+.|+..+.. .+. +.+.......+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~------------~v~~i~~~~~------~~~-~~~~~~~~~~~~ 71 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--L---SGK------------KVAYVDTEGG------FSP-ERLVQMAETRGL 71 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCS------------EEEEEESSCC------CCH-HHHHHHHHTTTC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCC------------cEEEEECCCC------CCH-HHHHHHHHhcCC
Confidence 589999999999999999999999999 3 221 2555554421 111 111111121121
Q ss_pred CCCchHHHHHHHHHHhccCCCCCCCCCCcccC--CchhhhhhhccC-ccEEEEcCcccCCCh
Q 023126 157 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDDILVGLQ-HKVVIVDGNYLFLDG 215 (287)
Q Consensus 157 ~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~--qrv~ia~al~~~-a~~li~d~~~lllDe 215 (287)
+.+ +.++.+ .+...+.+++ ++++.+.+++.. ++++++|++..++|.
T Consensus 72 ----~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 72 ----NPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp ----CHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred ----ChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 111 122222 2234455654 456666667764 999999999999874
No 146
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.83 E-value=3.5e-09 Score=87.19 Aligned_cols=116 Identities=8% Similarity=-0.016 Sum_probs=66.5
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC---------C-----CCCceeEEEeCCCCCCC
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ---------V-----KPPDVATVLPMDGFHLY 137 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~---------~-----~~~~~i~~v~qd~~~~~ 137 (287)
+++ +.+.+| +++|+||||||||||+++|.+++. +..|.....+ . .....+.+++|++...+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~ 93 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGF 93 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcccccccccchheeecccccCCCCceEEEEEEEeCCCccc
Confidence 344 778888 999999999999999999999998 7776532221 1 12335777888754322
Q ss_pred cc---cCCccccHHHH-HHhcCC-CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhh
Q 023126 138 LS---QLDAMEDPKEA-HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 193 (287)
Q Consensus 138 ~~---~ltv~e~i~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~i 193 (287)
++ .+++...+... ...+.. ........+.+.+..++...+. ..-++.|+.+++..
T Consensus 94 ~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~-~~~~~qg~~~~l~~ 153 (182)
T 3kta_A 94 PIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG-YNIVLQGDITKFIK 153 (182)
T ss_dssp SSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC-TTEECTTCTTHHHH
T ss_pred ccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC-CEEEEcccHHHHHh
Confidence 11 13333222110 000000 1112345667777776643322 23567787777644
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.82 E-value=1.4e-09 Score=93.35 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=22.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHH-HHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVV-RRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~-G~l~ 106 (287)
+++ +.+++|+++||+||||||||||+++|+ |+++
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 556 999999999999999999999999999 9984
No 148
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.79 E-value=3.6e-10 Score=97.42 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=32.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 121 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~ 121 (287)
+.+.+ ++++|+||||||||||+++|+|++. |++|+|.+++..
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~ 64 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTT 64 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC------
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEE
Confidence 34555 7889999999999999999999999 999999887754
No 149
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.75 E-value=1.9e-08 Score=90.40 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=65.3
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
+...+|++++|+|+|||||||+++.|++.+. +..|+| .++..|.+ .+ ..
T Consensus 99 ~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV-----------~lv~~D~~---r~--~a------------ 147 (306)
T 1vma_A 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSV-----------VLAAADTF---RA--AA------------ 147 (306)
T ss_dssp CCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCE-----------EEEEECTT---CH--HH------------
T ss_pred ccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEE-----------EEEccccc---cH--HH------------
Confidence 3467899999999999999999999999998 766543 44444532 00 00
Q ss_pred CCCCchHHHHHHHHHHhccCCCCCCCCCCcccCCch---hhhhhhccCccEEEEcCccc
Q 023126 156 APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 211 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv---~ia~al~~~a~~li~d~~~l 211 (287)
.+.+..+++.++.. .++.+|+|+.+++ +++.++...++++++|.+-.
T Consensus 148 ------~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 ------IEQLKIWGERVGAT---VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------HHHHHHHHHHHTCE---EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------HHHHHHHHHHcCCc---EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11222333333311 1346789999998 77777888889999987754
No 150
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=2e-08 Score=91.13 Aligned_cols=126 Identities=14% Similarity=0.104 Sum_probs=62.5
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccccCCCCCC------ceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 83 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPP------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G-~l~~~~p~~G~i~~~~~~~~------~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
.+.|.||||+|||||+++|++ ++. |+.|.+.+++.... ..++++++..+.... ..+ .+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT----PSD--------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC------------------CCEECSSEEEEC----CC-----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccceEEec----Hhh--------cC
Confidence 489999999999999999999 677 89999877664321 224455554321110 000 00
Q ss_pred CCCCchHHHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc----C--
Q 023126 156 APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E-- 227 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~----~-- 227 (287)
. .....+.+.++.+.... +... .||+ +..+++++++|+... +|+...+.+.+... .
T Consensus 103 ~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 103 N---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred C---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 0 11112334444332111 1111 3455 344589999999988 88854444444432 2
Q ss_pred ceEEEeCHHHHH
Q 023126 228 KWFIEVDLDTAM 239 (287)
Q Consensus 228 ~i~vtHd~~~~~ 239 (287)
.|++||+.+.+.
T Consensus 167 ~Il~t~~~~~l~ 178 (354)
T 1sxj_E 167 LIMVCDSMSPII 178 (354)
T ss_dssp EEEEESCSCSSC
T ss_pred EEEEeCCHHHHH
Confidence 368899976543
No 151
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.73 E-value=1.5e-10 Score=102.36 Aligned_cols=129 Identities=18% Similarity=0.079 Sum_probs=70.3
Q ss_pred cCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------Cc
Q 023126 54 KTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------PD 124 (287)
Q Consensus 54 ~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------~~ 124 (287)
++++.+.|+....+ +++ +.+.+| ++|+||||||||||+++|++.+. .|.+.+++... ..
T Consensus 52 l~~l~~~~~~~~~l-----~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~ 119 (278)
T 1iy2_A 52 LKEIVEFLKNPSRF-----HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAA 119 (278)
T ss_dssp HHHHHHHHHCHHHH-----HHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHH
T ss_pred HHHHHHHHHCHHHH-----HHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHH
Confidence 34455555444444 566 778888 89999999999999999999874 34444432110 01
Q ss_pred eeEEEeCCCCCCCcccCCccccHHHHHHhcCC----CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhccC
Q 023126 125 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 200 (287)
Q Consensus 125 ~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~~ 200 (287)
.+.+++|...... +.+++.+++......... ......+.+.+.+ ..|||||+|++.+
T Consensus 120 ~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-----------~~lsgg~~~~~~i------- 180 (278)
T 1iy2_A 120 RVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-----------VEMDGFEKDTAIV------- 180 (278)
T ss_dssp HHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHHH-----------HHHTTCCTTCCEE-------
T ss_pred HHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-----------HHHhCCCCCCCEE-------
Confidence 1334444422111 235666777543221110 0111112222222 2478999999999
Q ss_pred ccEEEEcCcccCCCh
Q 023126 201 HKVVIVDGNYLFLDG 215 (287)
Q Consensus 201 a~~li~d~~~lllDe 215 (287)
+.++..+|.. +|+
T Consensus 181 ~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 181 VMAATNRPDI--LDP 193 (278)
T ss_dssp EEEEESCTTS--SCH
T ss_pred EEEecCCchh--CCH
Confidence 4444445543 564
No 152
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.69 E-value=8.3e-08 Score=80.48 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=40.6
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
..++++.+++. |.. +...++.+++++.+.++..+|+..|. |.+.+.+...+.. ..+.... ...||++
T Consensus 106 ~~vv~~~~~l~--e~~---~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~~----~~~ad~v 172 (206)
T 1jjv_A 106 PYTLFVVPLLI--ENK---LTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQER----LKWADDV 172 (206)
T ss_dssp SEEEEECTTTT--TTT---CGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHHH----HHHCSEE
T ss_pred CEEEEEechhh--hcC---cHhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHHH----HHhCCEE
Confidence 36667765432 211 34556778899999999998887653 4455544444443 1232222 2368999
Q ss_pred eccCC
Q 023126 282 IKSID 286 (287)
Q Consensus 282 ~~~~~ 286 (287)
+++..
T Consensus 173 Idn~~ 177 (206)
T 1jjv_A 173 INNDA 177 (206)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 98753
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.68 E-value=4.3e-08 Score=78.75 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|+.++|+||||||||||+++|++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999997
No 154
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.68 E-value=9e-11 Score=102.15 Aligned_cols=125 Identities=17% Similarity=0.064 Sum_probs=67.8
Q ss_pred ccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCC--------C
Q 023126 53 GKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 123 (287)
Q Consensus 53 ~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~--------~ 123 (287)
+++++.+.|+....+ +++ +.+.+| ++|+||||||||||+++|++.+. .|.+.+++... .
T Consensus 27 ~l~~l~~~~~~~~~~-----~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~ 94 (254)
T 1ixz_A 27 ELKEIVEFLKNPSRF-----HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 94 (254)
T ss_dssp HHHHHHHHHHCHHHH-----HHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHCHHHH-----HHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHH
Confidence 344555555544444 566 788888 89999999999999999999864 34444332110 0
Q ss_pred ceeEEEeCCCCCCCcccCCccccHHHHHHhcCC----CCCchHHHHHHHHHHhccCCCCCCCCCCcccCCchhhhhhhcc
Q 023126 124 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 199 (287)
Q Consensus 124 ~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~lSgG~~qrv~ia~al~~ 199 (287)
..+..++|...... +.+.+.+++......... ......+.+.+.+. .||||++|++.+++++..
T Consensus 95 ~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~-----------~l~g~~~~~~~i~~a~t~ 162 (254)
T 1ixz_A 95 ARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-----------EMDGFEKDTAIVVMAATN 162 (254)
T ss_dssp HHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHHHH-----------HHHTCCTTCCEEEEEEES
T ss_pred HHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHHHH-----------HHhCCCCCCCEEEEEccC
Confidence 11334444422111 235666777443221111 11111122233332 467999999999555444
Q ss_pred Cc
Q 023126 200 QH 201 (287)
Q Consensus 200 ~a 201 (287)
.+
T Consensus 163 ~p 164 (254)
T 1ixz_A 163 RP 164 (254)
T ss_dssp CG
T ss_pred Cc
Confidence 43
No 155
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=7e-09 Score=90.59 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=35.3
Q ss_pred CCccccCcc-cccc-cccchhhhhhcCcc-ceecC---CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 49 QPVFGKTRS-LVQN-KTSLKVLCSQRREI-PVVEA---RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 49 ~~~~~~~~~-~~~~-~~~~~~v~~~~~~~-~~i~~---GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++++++++ ++.| +...++ +++ +.+.+ |++++|+|++||||||++++|++.+.
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~l-----~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 15 SALLETGSLLHSPFDEEQQIL-----KKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp -----------------CHHH-----HHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCceEEcceeeEEecCcchhh-----hhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 358999999 9999 666677 888 99999 99999999999999999999999886
No 156
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.62 E-value=8.1e-09 Score=83.05 Aligned_cols=61 Identities=10% Similarity=0.085 Sum_probs=48.4
Q ss_pred CCCCCCCCCcccCCchhhh------hhhccCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHH
Q 023126 176 GSVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD 236 (287)
Q Consensus 176 ~~~~~~~lSgG~~qrv~ia------~al~~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~ 236 (287)
.++++.+|||||+||+++| ++++.+|+++++|||+..||+. +++.+.++.. ..+++|||++
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 3567789999999999886 6788999999999999999994 4444555433 2468999985
No 157
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.58 E-value=1e-08 Score=103.40 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHhccC---CCCCCCCCCcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc---CceEEEeCH
Q 023126 168 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 235 (287)
Q Consensus 168 ~l~~l~~~---~~~~~~~lSgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~---~~i~vtHd~ 235 (287)
.|..++.. .++++.+|||||+||++||.+++..+ +++++|||+..||+ .+++.++.+.+ .+|+|+||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45556632 57788899999999999999999988 59999999999998 34444444433 357999999
Q ss_pred HHHHH--HHh----------hccccCCChHHHHH
Q 023126 236 DTAMQ--RVL----------KRHISTGKPPDVAK 257 (287)
Q Consensus 236 ~~~~~--rv~----------gr~v~~G~~~ev~~ 257 (287)
+++.. |++ |++++.|+++++..
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 96644 333 46778888887643
No 158
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.57 E-value=1.1e-08 Score=85.81 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=30.2
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.. +..++|++++|+|+|||||||++++|++.+.
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444 5678999999999999999999999999984
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.57 E-value=1.7e-08 Score=83.66 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=24.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.57 E-value=2.5e-08 Score=83.40 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=29.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
.+.+|++++|+|||||||||++++|++.+. |+.|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 578999999999999999999999999986 7555
No 161
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.57 E-value=5.9e-07 Score=80.21 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=36.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCC
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 134 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~ 134 (287)
.+|++++|+|+|||||||+++.|++.+. +++| ..+.++.+|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G----------~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH----------KKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC----------CCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC----------CEEEEEecCcc
Confidence 5789999999999999999999999998 7666 23777888754
No 162
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.56 E-value=2.6e-08 Score=83.62 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999884
No 163
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.55 E-value=2.2e-07 Score=77.71 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=42.0
Q ss_pred cEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccEE
Q 023126 202 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 281 (287)
Q Consensus 202 ~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~i 281 (287)
.++++|.+++.-. .+....+.+++++-+.++..+|+..| |...+.+.+.+... .+. .+....||++
T Consensus 106 ~~vive~~~l~~~-----~~~~~~~~~i~l~~~~e~~~~Rl~~R----~~~~~~~~~~~~~~-~~~----~~~~~~ad~v 171 (204)
T 2if2_A 106 TLFILEASLLVEK-----GTYKNYDKLIVVYAPYEVCKERAIKR----GMSEEDFERRWKKQ-MPI----EEKVKYADYV 171 (204)
T ss_dssp CCEEEECSCSTTT-----TCGGGSSEEEEECCCHHHHHHHHHHT----CCCHHHHHHHHTTS-CCH----HHHGGGCSEE
T ss_pred CEEEEEccccccC-----CchhhCCEEEEEECCHHHHHHHHHHc----CCCHHHHHHHHHhC-CCh----hHHHhcCCEE
Confidence 5677787654321 12234566789999999998888766 44444444444432 222 2334568999
Q ss_pred eccC
Q 023126 282 IKSI 285 (287)
Q Consensus 282 ~~~~ 285 (287)
+++.
T Consensus 172 Id~~ 175 (204)
T 2if2_A 172 IDNS 175 (204)
T ss_dssp CCCS
T ss_pred EECC
Confidence 8764
No 164
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.48 E-value=1.5e-09 Score=101.48 Aligned_cols=118 Identities=17% Similarity=0.092 Sum_probs=67.6
Q ss_pred cc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH--
Q 023126 74 EI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-- 150 (287)
Q Consensus 74 ~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-- 150 (287)
++ +.++.|++++|+|+||||||||+++|+|..+ ...+ ..+ ......++++.+++.. .+++.+..-+.
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---~i~~-~~f--tTl~p~~G~V~~~~~~----~~~l~DtpGli~~ 218 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---KIAP-YPF--TTLSPNLGVVEVSEEE----RFTLADIPGIIEG 218 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---EECC-CTT--CSSCCEEEEEECSSSC----EEEEEECCCCCCC
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---cccC-ccc--ceecceeeEEEecCcc----eEEEEeccccccc
Confidence 45 7899999999999999999999999999742 1111 000 0112235666665410 12222222110
Q ss_pred -HHhcCCCCCchHHHHHHHHHHhc-----cCC-CCCCCCCCcccCCchhhhhhhccCccEEEE
Q 023126 151 -HARRGAPWTFNPLLLLNCLKNLR-----NQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIV 206 (287)
Q Consensus 151 -~~~~~~~~~~~~~~~~~~l~~l~-----~~~-~~~~~~lSgG~~qrv~ia~al~~~a~~li~ 206 (287)
....++. ..+.+.++... ... ..++.+||+|++|++.++.+++..|.++++
T Consensus 219 a~~~~~L~-----~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 219 ASEGKGLG-----LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp GGGSCCSC-----HHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred hhhhhhhh-----HHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 0000010 11111111111 011 345558999999999999999889999987
No 165
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.47 E-value=6.8e-08 Score=79.68 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999875
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.46 E-value=4.3e-08 Score=95.91 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=85.1
Q ss_pred cccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-cccccCCCCC---CceeEEEe
Q 023126 56 RSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKP---PDVATVLP 130 (287)
Q Consensus 56 ~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~-G~i~~~~~~~---~~~i~~v~ 130 (287)
.+..-+|...++ +.+ +.+..|+.++|+||||+|||||+++|+++++ +.. |.+.+.+... ...+.+++
T Consensus 39 ~l~~i~G~~~~l-----~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~~p 110 (604)
T 3k1j_A 39 LIDQVIGQEHAV-----EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKTVP 110 (604)
T ss_dssp HHHHCCSCHHHH-----HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEEEE
T ss_pred ccceEECchhhH-----hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEEEe
Confidence 344445555555 666 7899999999999999999999999999998 766 4454433221 22355655
Q ss_pred CCCC--------------------CCCcccCCccccHHHHHHhcCC-CCCc---hHHHHHHHHHHhccCCCCCCCCCCcc
Q 023126 131 MDGF--------------------HLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHG 186 (287)
Q Consensus 131 qd~~--------------------~~~~~~ltv~e~i~~~~~~~~~-~~~~---~~~~~~~~l~~l~~~~~~~~~~lSgG 186 (287)
+... .+....+++.+|+... .... +... ......+++..+. ........+|+|
T Consensus 111 ~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~--~~~~~~~~~v~~~~~~~~~L~G~~~-~~~~~~g~~~~g 187 (604)
T 3k1j_A 111 ACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVD--NCGRTKAPFIDATGAHAGALLGDVR-HDPFQSGGLGTP 187 (604)
T ss_dssp TTHHHHHHHHHHHHHHHHTCC-----------CCCEEEEC--CTTCSSCCEEECTTCCHHHHHCEEC-CCCC----CCCC
T ss_pred cchHHHHHHHHHHhhccchhhhhhcccccccccccceeec--cccCCCCCEEEcCCCCHHhcCceEE-echhhcCCcccc
Confidence 4320 0000112222222110 0000 0000 0011122221111 112233578999
Q ss_pred cCCchhhhhhhccCccEEEEcCcccCCChhhHHHHHHhhc
Q 023126 187 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 226 (287)
Q Consensus 187 ~~qrv~ia~al~~~a~~li~d~~~lllDe~~~~~l~~~~~ 226 (287)
++|++..+.....+..+|++|+.-. +++..|..|.+..+
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred ccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 9999888766666677888887665 45666666655543
No 167
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.39 E-value=5.2e-06 Score=69.22 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+++|+|++||||||+++.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999999875
No 168
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.37 E-value=2.1e-07 Score=77.92 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=25.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..++|++++|+|+||||||||+++|++.+.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4567899999999999999999999999874
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.34 E-value=1.4e-07 Score=77.44 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.5
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
+.+.+|+.++|.||||+|||||+++|++.+. |+.|
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 5678899999999999999999999999997 6665
No 170
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.33 E-value=2.1e-06 Score=74.02 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=37.2
Q ss_pred cCceEEEeCHHHHHHHHhhccccCC--ChHHHHHHHHHhcCcchHH-HHhhcCCCcc-EEeccCC
Q 023126 226 DEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 286 (287)
Q Consensus 226 ~~~i~vtHd~~~~~~rv~gr~v~~G--~~~ev~~~~~~~~~~~~~~-~i~~~~~~aD-~i~~~~~ 286 (287)
+..||++-++++..+|+..+..+.| ...+.+...+......... +..|.+...| ++|++.+
T Consensus 147 ~lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 147 DVKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 3468999999999887775444332 2333333333333333333 6667777666 9998764
No 171
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.32 E-value=1.4e-06 Score=77.69 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 116 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~ 116 (287)
+|++++|+|+||+||||++..|++.+. +..|++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~ 130 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPL 130 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEE
Confidence 899999999999999999999999998 7666543
No 172
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.30 E-value=3.3e-07 Score=77.30 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=26.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999986
No 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.28 E-value=8.9e-06 Score=65.28 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=44.5
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhc---CceEEEeCHHHHHHHHhhcccc-CCC-hHHHHHHHHHhcCcchHHHHhhcC
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHIS-TGK-PPDVAKWRIEYNDRPNAELIMKSK 275 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~---~~i~vtHd~~~~~~rv~gr~v~-~G~-~~ev~~~~~~~~~~~~~~~i~~~~ 275 (287)
...+++|+. ......+.+.+... ..|++.-+.+.+.+|+..|... .+. .+++...+...... ...+..
T Consensus 78 ~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~----~~~~~~ 150 (179)
T 3lw7_A 78 HDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKL----GIGEVI 150 (179)
T ss_dssp CSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHH----THHHHH
T ss_pred CCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhcc----ChHhHH
Confidence 456777873 55555566666654 4679999999999888865332 122 33333332111111 133345
Q ss_pred CCccEEeccC
Q 023126 276 KNADLVIKSI 285 (287)
Q Consensus 276 ~~aD~i~~~~ 285 (287)
..||+++++.
T Consensus 151 ~~ad~vId~~ 160 (179)
T 3lw7_A 151 AMADYIITND 160 (179)
T ss_dssp HTCSEEEECC
T ss_pred HhCCEEEECC
Confidence 6789999865
No 174
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.27 E-value=1.2e-06 Score=81.41 Aligned_cols=30 Identities=33% Similarity=0.331 Sum_probs=25.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHH--HHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEV--VRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L--~G~l~ 106 (287)
-+++|++++|+||||||||||++.| .+.++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 4899999999999999999999955 45554
No 175
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.25 E-value=4.4e-07 Score=77.52 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=26.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999999999994
No 176
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.24 E-value=3.8e-07 Score=88.15 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=32.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
.+++|++++|+|+||||||||+++|++.+. |++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence 578999999999999999999999999998 8876
No 177
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.22 E-value=5.8e-07 Score=74.02 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=48.3
Q ss_pred CCCCCCCCcccCCchhhhhhhc----cCccEEEEcCcccCCCh----hhHHHHHHhhcC--ceEEEeCHHHH
Q 023126 177 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDG----GVWKDVSSMFDE--KWFIEVDLDTA 238 (287)
Q Consensus 177 ~~~~~~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe----~~~~~l~~~~~~--~i~vtHd~~~~ 238 (287)
...+..||||||||+++|++++ .+++++++|++...||+ .+++.+.++... .|++||+....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~ 130 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM 130 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH
Confidence 4556789999999999999996 45799999999999998 344555554432 47899997654
No 178
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.22 E-value=7.9e-07 Score=72.38 Aligned_cols=28 Identities=39% Similarity=0.639 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|++++|+|+|||||||+++.|++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5689999999999999999999999874
No 179
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.21 E-value=6.6e-07 Score=85.86 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=50.3
Q ss_pred CCCCC-CcccCCchhhhhhhccCc--cEEEEcCcccCCCh----hhHHHHHHhhc--CceEEEeCHHHHHH
Q 023126 179 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ 240 (287)
Q Consensus 179 ~~~~l-SgG~~qrv~ia~al~~~a--~~li~d~~~lllDe----~~~~~l~~~~~--~~i~vtHd~~~~~~ 240 (287)
++..| ||||+||+++|++++.++ ++|++|+++..+|. .+.+.|.++.+ .+|+|||+++.+..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 45577 999999999999999999 99999999999998 34444444432 35799999997755
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.18 E-value=8.6e-07 Score=83.05 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=45.6
Q ss_pred CCCcccCCchhhhhhhc----cCccEEEEcCcccCCChh----hHHHHHHhhc---CceEEEeCHHHH
Q 023126 182 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 238 (287)
Q Consensus 182 ~lSgG~~qrv~ia~al~----~~a~~li~d~~~lllDe~----~~~~l~~~~~---~~i~vtHd~~~~ 238 (287)
.|||||+|++++|++++ .++.++++|+++..||+. +.+.+.++.. ..|++||+....
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 49999999999999998 578999999999999993 4444555433 357899997654
No 181
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.17 E-value=1.2e-06 Score=77.51 Aligned_cols=72 Identities=19% Similarity=0.441 Sum_probs=46.8
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
..+++.|+.+++-. .+...++.+||++.+.+++.+|+..|. |.+.+.+...+... .+..+++ ..||+
T Consensus 181 ~~~vIveg~~l~~~-----~~~~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~ 247 (281)
T 2f6r_A 181 KTLCVIDAAMLLEA-----GWQSMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNV 247 (281)
T ss_dssp CCEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSE
T ss_pred CCEEEEEechhhcc-----chHHhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCE
Confidence 46889998865422 123456778899999999998888653 44445454555443 3444443 36899
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
++++.
T Consensus 248 vIdn~ 252 (281)
T 2f6r_A 248 VLSTL 252 (281)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99875
No 182
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.17 E-value=8.5e-07 Score=71.91 Aligned_cols=27 Identities=37% Similarity=0.663 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.|++++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999886
No 183
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.16 E-value=3.5e-07 Score=83.24 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=46.5
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+++..+..+.|+.+.++ +++ +.+.+|.+++|+|++|||||||++.|++.+. +..|++
T Consensus 30 ~ie~~~~~~~~~~~~~~-----~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~v 87 (341)
T 2p67_A 30 LVESRHPRHQALSTQLL-----DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLKV 87 (341)
T ss_dssp HHHCCCHHHHHHHHHHH-----HHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCCE
T ss_pred HhhcCCchhhhHHHHHH-----HhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeE
Confidence 45666777777766555 666 7789999999999999999999999999997 666654
No 184
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.16 E-value=1.7e-07 Score=89.67 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=30.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCcccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSF 116 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G-~l~~~~p~~G~i~ 116 (287)
+.+.++..+.|+|.+||||||+++.|.. ++.. ++.|++.
T Consensus 162 ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~ 201 (512)
T 2ius_A 162 ADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVR 201 (512)
T ss_dssp EEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEE
T ss_pred EEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEE
Confidence 6788899999999999999999999876 3321 4556543
No 185
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.16 E-value=5.6e-07 Score=77.11 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
...++|++++|.|+||||||||+++|+|.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 56789999999999999999999999985
No 186
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.15 E-value=4.6e-06 Score=69.71 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.++||.|+.||||||+.+.|+..+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998765
No 187
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.12 E-value=9.2e-07 Score=81.93 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=33.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHH------------HhcccCCCCcccccCC
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKASSFDSQ 119 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G------------~l~~~~p~~G~i~~~~ 119 (287)
.+.+|.++||+|+||||||||+++|+| ... |+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCC
Confidence 578899999999999999999999999 334 6777766654
No 188
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.12 E-value=6.4e-06 Score=77.71 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=69.9
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHH-HH--
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-HA-- 152 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~-~~-- 152 (287)
..+.+|+++.|.|++|+|||||+..+++... +..| ..+.|+..+ ++..+..... ..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E--------~s~~~l~~r~~~~~~ 256 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLE--------MSAQQLVMRMLCAEG 256 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESS--------SCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECC--------CCHHHHHHHHHHHHc
Confidence 4589999999999999999999999999875 4333 125566544 2221111110 00
Q ss_pred -------hcCCCCCchHHHHHHHHHHhccCC--CCCCCCCCcccCCchhhhhhhccCccEEEEcCcccCCC
Q 023126 153 -------RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 214 (287)
Q Consensus 153 -------~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~lllD 214 (287)
..+.....+++++.+.+..+.... -...+.+|.++.+..+.......+++++++|...++.+
T Consensus 257 ~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 257 NINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp TCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 111112234455556665554211 11345788887654333322235789999999988874
No 189
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.12 E-value=6.8e-07 Score=75.77 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=30.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
+.+++|+|++||||||++++|++.+...++++|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999988322278888654
No 190
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.12 E-value=1.4e-06 Score=78.60 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=36.1
Q ss_pred cc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 74 EI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 74 ~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
++ +.+.+|++++|+|+||+||||++..|++.+. +..|+|.+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVll 138 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLI 138 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEE
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEE
Confidence 45 6788999999999999999999999999998 87777654
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.08 E-value=1.9e-06 Score=72.32 Aligned_cols=31 Identities=19% Similarity=0.365 Sum_probs=26.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+...+|++++|+||||||||||++.|.+.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999999999874
No 192
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.07 E-value=1.6e-05 Score=65.05 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356889999999999999999998775
No 193
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.02 E-value=1.7e-06 Score=71.51 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|+||||||||++.++|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 789999999999999999999865
No 194
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.00 E-value=2.3e-06 Score=78.86 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++ +.+++|++++|+||||||||||+++|+|.+.
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 555 7899999999999999999999999999654
No 195
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.99 E-value=4.9e-07 Score=86.33 Aligned_cols=32 Identities=38% Similarity=0.594 Sum_probs=27.9
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++ +.+.+| +.|+||||+|||||+++|++...
T Consensus 57 ~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 57 HEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp TTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 555 677888 89999999999999999999864
No 196
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.95 E-value=4.6e-06 Score=68.17 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=25.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|++++|.|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999986
No 197
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.93 E-value=2e-06 Score=83.08 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=44.8
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCC
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 119 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~ 119 (287)
+...+++...++....+ ..+ +.+ +|++++|+||||+|||||+++|++.+. +..|.+..++
T Consensus 83 i~G~~~vk~~i~~~~~l-----~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~ 143 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAV-----QKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGG 143 (543)
T ss_dssp CSSCHHHHHHHHHHHHH-----HHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC
T ss_pred hccHHHHHHHHHHHHHH-----HHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEecc
Confidence 44455555555544444 444 444 899999999999999999999999998 8878776655
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.92 E-value=4.9e-06 Score=75.91 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=31.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
.++.+++|+|++|||||||++.|.|.+. ++.|++.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEE
Confidence 3478999999999999999999999988 77776543
No 199
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.90 E-value=1.4e-05 Score=65.46 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998775
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.87 E-value=2.1e-06 Score=72.28 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 113 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G 113 (287)
..+.+|.++.|.|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 5678899999999999999999999999987 6655
No 201
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.84 E-value=1.3e-05 Score=64.14 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=23.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.+.+| +.+|+|||||||||++.+|.-.+
T Consensus 19 i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 19 VEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344444 88999999999999999998665
No 202
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.83 E-value=5.1e-06 Score=68.90 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 203
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.83 E-value=6.1e-06 Score=74.88 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4789999999999999999999875
No 204
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.81 E-value=1.2e-05 Score=66.14 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=28.1
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....+|.++.|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999999987
No 205
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.75 E-value=1.3e-05 Score=66.94 Aligned_cols=30 Identities=27% Similarity=0.414 Sum_probs=26.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...+|.+++|+||+|||||||++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999998774
No 206
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.73 E-value=1.1e-05 Score=75.38 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=29.1
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK 112 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~ 112 (287)
+.+.+|++++|+||||||||||+++|.+++. |.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~---~~~ 54 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG---VRS 54 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT---C--
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc---ccc
Confidence 3567799999999999999999999999987 654
No 207
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.70 E-value=1.7e-05 Score=67.55 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=24.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+.+|++++|+|+||||||||+..++...
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999976555443
No 208
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.64 E-value=4e-05 Score=65.60 Aligned_cols=29 Identities=31% Similarity=0.562 Sum_probs=27.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.++.|.|++||||||+++.|+..+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999999999997
No 209
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.61 E-value=3.6e-05 Score=62.85 Aligned_cols=28 Identities=36% Similarity=0.652 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|.+++|+|++||||||+++.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999998664
No 210
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.59 E-value=3.9e-05 Score=70.63 Aligned_cols=56 Identities=14% Similarity=0.043 Sum_probs=41.9
Q ss_pred ccccCcccccccccchhhh-----------hhcCccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 51 VFGKTRSLVQNKTSLKVLC-----------SQRREIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~-----------~~~~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.+++++..|......+. +..|..+.+.+|+.++|+||+|+|||||++.|+....
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4667788887765332222 1113338899999999999999999999999999875
No 211
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.57 E-value=5.2e-05 Score=70.86 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+|++++++|+|||||||++..|++.+. +..|++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~V 129 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRP 129 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeE
Confidence 899999999999999999999999998 766554
No 212
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.57 E-value=4.6e-05 Score=65.15 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.+|.+++|+|++||||||+++.|++.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999999765
No 213
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.56 E-value=3.6e-05 Score=70.35 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.9
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
-+.+|+++.|.||+|||||||+..++.... +..|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~ 91 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGV 91 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCe
Confidence 388999999999999999999999999887 65554
No 214
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.56 E-value=0.0004 Score=58.63 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=48.5
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
..++++|-++++=. ..+...++.+|+|+.+.+...+|+..|. |.+.+.+.+++.. ..+.++ ..+.||+
T Consensus 112 ~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~~-Q~~~ee----k~~~AD~ 179 (210)
T 4i1u_A 112 GPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIAR-QATREA----RLAAADD 179 (210)
T ss_dssp SSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHH-SCCHHH----HHHTCSE
T ss_pred CCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHHH-cCChHH----HHHhCCE
Confidence 34567777765421 2345678889999999999998888654 5566655555442 234333 3478999
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
||+|.
T Consensus 180 VIdN~ 184 (210)
T 4i1u_A 180 VIVND 184 (210)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99876
No 215
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.55 E-value=2.3e-05 Score=71.90 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=44.4
Q ss_pred CCCCCCcccCCchh------hhhhhccC-ccEEEEcCcccCCChh----hHHHHHHhhc--CceEEEeCHHH
Q 023126 179 YAPSFDHGVGDPVE------DDILVGLQ-HKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDT 237 (287)
Q Consensus 179 ~~~~lSgG~~qrv~------ia~al~~~-a~~li~d~~~lllDe~----~~~~l~~~~~--~~i~vtHd~~~ 237 (287)
++..|||||+||++ +|.++... ++++++|+++..+|+. +++.+.++.. .++++||+++.
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 34589999999985 45667778 9999999999999984 3444444322 35789999864
No 216
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.51 E-value=4.4e-05 Score=61.81 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 217
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.51 E-value=5.9e-05 Score=60.51 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 218
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=3.4e-05 Score=69.62 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=32.0
Q ss_pred Ccc-ceecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 73 REI-PVVEARHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 73 ~~~-~~i~~Gei--vgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
+.+ ..++.|++ +.|.||+|+||||+++++++.+. +..+.
T Consensus 35 ~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~~ 76 (340)
T 1sxj_C 35 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNYS 76 (340)
T ss_dssp HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSHH
T ss_pred HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCcc
Confidence 445 56778887 99999999999999999999986 55443
No 219
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.49 E-value=6.2e-05 Score=61.82 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=26.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+...+|.+++|+|++||||||+++.|+..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56678899999999999999999999987
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.49 E-value=4.1e-05 Score=68.23 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=30.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
+..+ |++++++|+||+||||++..|++.+. +..++
T Consensus 94 ~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~ 128 (297)
T 1j8m_F 94 PDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFK 128 (297)
T ss_dssp CSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCC
T ss_pred cCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCe
Confidence 5555 99999999999999999999999997 65544
No 221
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.47 E-value=8.5e-05 Score=62.31 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+ .+.+|+|||||||||++.+|.-.+.
T Consensus 19 i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 19 VEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444 4889999999999999999987765
No 222
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.46 E-value=5.9e-05 Score=68.43 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=27.8
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
--+.+|+++.|.|++|+|||||+..++....
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999888764
No 223
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.45 E-value=9.6e-05 Score=64.12 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3689999999999999999999775
No 224
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.43 E-value=6.9e-05 Score=64.89 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=29.1
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+......+.++.|+|++||||||+++.|+..+.
T Consensus 24 ~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 24 RGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp TTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3344577889999999999999999999999874
No 225
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.43 E-value=7.5e-05 Score=61.27 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5789999999999999999999875
No 226
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.42 E-value=9.5e-05 Score=59.86 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56889999999999999999999875
No 227
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.37 E-value=0.0032 Score=56.94 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=25.1
Q ss_pred cCCe--EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARH--IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~Ge--ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+. .+.|.||+|+|||||++.+++.+.
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4456 899999999999999999999986
No 228
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.37 E-value=3.8e-05 Score=73.57 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=29.1
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++ +.+.+| +.+|+|+||||||||+.+|..++.
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg 85 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 556 788888 999999999999999999988853
No 229
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.33 E-value=7.7e-05 Score=69.03 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=24.9
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+..|..++|+|+||+|||||++.|+|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4677888999999999999999999987
No 230
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.00013 Score=59.48 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 66899999999999999999998774
No 231
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.32 E-value=9.4e-05 Score=59.19 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|++|+|||||++.+.|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 232
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.32 E-value=0.00014 Score=60.03 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999875
No 233
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.32 E-value=0.00011 Score=59.49 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999999876
No 234
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.31 E-value=0.00015 Score=59.34 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999998764
No 235
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.29 E-value=0.00014 Score=66.30 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=27.8
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHH--HhcccCCCCcccc
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSF 116 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G--~l~~~~p~~G~i~ 116 (287)
+++ +.+. .++|+|++|||||||++.|.| +++ +.+|.+.
T Consensus 28 ~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp---~~~~~vT 68 (360)
T 3t34_A 28 PTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP---RGSGIVT 68 (360)
T ss_dssp ----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC---CCSSSCC
T ss_pred ccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC---CCCCccc
Confidence 444 4554 889999999999999999999 555 5556543
No 236
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.29 E-value=0.00017 Score=60.64 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
.+.+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999998
No 237
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.24 E-value=0.00022 Score=59.07 Aligned_cols=27 Identities=26% Similarity=0.387 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.+++|.|+.||||||+++.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999885
No 238
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.23 E-value=0.00026 Score=63.39 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
--+.+|+++.|.|++|+|||||+..++...
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999998888654
No 239
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.23 E-value=0.00015 Score=67.92 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=25.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.+++++|+|||||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999997
No 240
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.22 E-value=0.00022 Score=63.09 Aligned_cols=30 Identities=30% Similarity=0.536 Sum_probs=26.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.....|.++.|.||+||||||+++.|+..+
T Consensus 28 ~~~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 28 KAVESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CCCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345668899999999999999999998866
No 241
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.22 E-value=0.00015 Score=66.03 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=26.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.+|+++.|.|+||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988887664
No 242
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.22 E-value=0.0002 Score=59.24 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999999875
No 243
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.21 E-value=7.7e-05 Score=68.22 Aligned_cols=45 Identities=20% Similarity=0.103 Sum_probs=31.4
Q ss_pred ccccCcccccccccchhhhhhcCcc-ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 51 VFGKTRSLVQNKTSLKVLCSQRREI-PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 51 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++.++...++.+.+. ++. +. ++|+|++|+|||||++.|.+...
T Consensus 17 ~v~~~~l~~~~~~k~~~-----~~~~~~------I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVK-----KGFEFT------LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHHHH-----HCCEEC------EEECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCeeec-----CCCCEE------EEEEcCCCCCHHHHHHHHhCCCC
Confidence 45667777777665555 555 54 49999999999999999987644
No 244
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.21 E-value=0.00024 Score=57.93 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.+++|.|++||||||+++.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998765
No 245
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.20 E-value=0.00021 Score=58.90 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=42.3
Q ss_pred ccEEEEcCcccCCChhhHHHHHHhhcCceEEEeCHHHHHHHHhhccccCCChHHHHHHHHHhcCcchHHHHhhcCCCccE
Q 023126 201 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 280 (287)
Q Consensus 201 a~~li~d~~~lllDe~~~~~l~~~~~~~i~vtHd~~~~~~rv~gr~v~~G~~~ev~~~~~~~~~~~~~~~i~~~~~~aD~ 280 (287)
.++++.|.++++.+ . +....+.+++++.+.+...+|+..|. |...+.+...+.. ..+.+. ....||+
T Consensus 106 ~~~vi~d~~~l~~~-~----~~~~~d~~i~l~~~~e~~~~R~~~R~---~~~~~~~~~~i~~-~~~~~~----~~~~ad~ 172 (203)
T 1uf9_A 106 APLVFLEIPLLFEK-G----WEGRLHGTLLVAAPLEERVRRVMARS---GLSREEVLARERA-QMPEEE----KRKRATW 172 (203)
T ss_dssp CSEEEEECTTTTTT-T----CGGGSSEEEEECCCHHHHHHHHHTTT---CCTTHHHHHHHTT-SCCHHH----HHHHCSE
T ss_pred CCEEEEEecceecc-C----chhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-CCChhH----HHHhCCE
Confidence 57888898765443 1 22345667899999999888887552 3333333344433 222222 2345788
Q ss_pred EeccC
Q 023126 281 VIKSI 285 (287)
Q Consensus 281 i~~~~ 285 (287)
++++.
T Consensus 173 vId~~ 177 (203)
T 1uf9_A 173 VLENT 177 (203)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 88764
No 246
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.20 E-value=0.00023 Score=58.39 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.+++|.|+.||||||+++.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677999999999999999999998775
No 247
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00017 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 248
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.19 E-value=7.9e-05 Score=62.14 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999886
No 249
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.18 E-value=0.00015 Score=64.54 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.+++|+|++|+|||||++.|.|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999864
No 250
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.17 E-value=0.00023 Score=58.77 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+|.+++|.|+.||||||+++.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999865
No 251
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.17 E-value=0.00024 Score=57.99 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999999885
No 252
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.17 E-value=0.00022 Score=58.01 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=25.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...+.++.|.|++||||||+++.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34567889999999999999999998765
No 253
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.16 E-value=0.00024 Score=59.07 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.+++|.|+.||||||+++.|+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999998765
No 254
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.15 E-value=0.00025 Score=57.15 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G 103 (287)
.++.|.|++||||||+++.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999997
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.13 E-value=0.00015 Score=59.06 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999999854
No 256
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.11 E-value=0.00028 Score=58.70 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.+++|.|+.||||||+++.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998775
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.11 E-value=0.00027 Score=58.55 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|+||||||||||++.|....+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999987653
No 258
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.10 E-value=0.00022 Score=58.59 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..+.+++|.|+.||||||+++.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45567899999999999999999998775
No 259
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.09 E-value=0.0011 Score=61.72 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=24.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-....++.|+|++||||||+++.|+..+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34568999999999999999999987554
No 260
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.09 E-value=0.00031 Score=69.29 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=31.1
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 115 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i 115 (287)
+.++++..++|+|++|+|||||++.|++.... .+..|+|
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~-~~~~G~V 42 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGA-KERRGRV 42 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTS-SSSCCCG
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCC-CCcccee
Confidence 35678999999999999999999999988761 1266776
No 261
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.06 E-value=0.00024 Score=66.50 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+||||||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 389999999999999999999975
No 262
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.05 E-value=0.00032 Score=57.16 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|.|++||||||+++.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999875
No 263
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.03 E-value=0.00043 Score=58.18 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++|-++.|+|+.||||||+++.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567899999999999999999998775
No 264
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.03 E-value=0.0004 Score=56.94 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999874
No 265
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.02 E-value=0.00026 Score=57.37 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.|.|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999998765
No 266
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.01 E-value=0.00034 Score=59.63 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 689999999999999999999765
No 267
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.99 E-value=0.00049 Score=55.18 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998775
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.97 E-value=0.00037 Score=70.27 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=28.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.+|+.+.|.||||||||||+++|++.+.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999999999875
No 269
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.96 E-value=0.0005 Score=57.42 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988765
No 270
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.95 E-value=0.00056 Score=58.86 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.|.||+|+|||||++.|++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHcC
Confidence 388999999999999999999875
No 271
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.94 E-value=0.0006 Score=56.39 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....+++|.|+.||||||+++.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999997664
No 272
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.94 E-value=0.00061 Score=56.37 Aligned_cols=28 Identities=39% Similarity=0.629 Sum_probs=24.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.+++|.|+.||||||+++.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456899999999999999999998775
No 273
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.94 E-value=0.00047 Score=63.40 Aligned_cols=35 Identities=26% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCccccc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 117 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~ 117 (287)
.+..++|+|++|||||||++.|++.+. +..+.+.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEE
Confidence 566789999999999999999999887 66666544
No 274
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.94 E-value=0.0005 Score=60.92 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=27.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467888999999999999999999999764
No 275
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.93 E-value=0.00047 Score=55.29 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|.|+.||||||+++.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998775
No 276
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.93 E-value=0.00056 Score=55.64 Aligned_cols=26 Identities=38% Similarity=0.638 Sum_probs=23.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+++|.|+.||||||+++.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998765
No 277
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.92 E-value=0.00056 Score=55.76 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 278
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.91 E-value=0.00064 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998775
No 279
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.90 E-value=0.0011 Score=59.56 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998775
No 280
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.90 E-value=0.00055 Score=57.89 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++.++.|.|+.||||||+++.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456899999999999999999998764
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.88 E-value=0.00061 Score=56.99 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987664
No 282
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.87 E-value=0.00071 Score=59.62 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=26.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 114 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~ 114 (287)
...+.|.||+|+||||+++.|++.+. +..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~---~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF---DTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH---SCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc---CCCcc
Confidence 46899999999999999999999987 55553
No 283
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.85 E-value=0.00055 Score=57.60 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.++.|+|++||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998775
No 284
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.84 E-value=0.00084 Score=57.63 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++-+++|.|+.||||||+++.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999998765
No 285
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.83 E-value=0.00049 Score=59.99 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|||||||++.|.|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.80 E-value=0.0014 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.650 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999998664
No 287
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.75 E-value=0.0008 Score=55.05 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=20.6
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+++ +..++. .++|+|++|+|||||++.+.+-
T Consensus 15 ~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 15 ASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 444 444444 6789999999999999999983
No 288
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.75 E-value=0.001 Score=57.66 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.|.|++||||||+++.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998753
No 289
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.73 E-value=0.001 Score=60.83 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
|..++|+|.+|+|||||++.|.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999983
No 290
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.73 E-value=0.00058 Score=62.47 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=21.2
Q ss_pred cCCeE-EEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHI-VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~Gei-vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|-. ++|+|++|||||||++.|+|...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 34444 99999999999999999998653
No 291
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.71 E-value=0.0024 Score=57.07 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++.|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999998764
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.70 E-value=0.001 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.-.++|+|+.|||||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999854
No 293
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.68 E-value=0.00089 Score=61.20 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=22.4
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+.+.+ -+..|.|+|||||||++.+|.=
T Consensus 21 i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 21 IKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred EecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 44444 4788999999999999999985
No 294
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.67 E-value=0.0023 Score=57.87 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998664
No 295
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.66 E-value=0.0012 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|.|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 296
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.65 E-value=0.0012 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999853
No 297
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.62 E-value=0.0013 Score=51.48 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 298
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.61 E-value=0.0012 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|-.+.|.|+.||||||+++.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998775
No 299
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.60 E-value=0.0014 Score=59.25 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=26.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+++|+++.|.|++|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999999986
No 300
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.60 E-value=0.0016 Score=55.18 Aligned_cols=31 Identities=23% Similarity=0.493 Sum_probs=27.2
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.+..++.|+||.||||+|.++.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3466778999999999999999999998876
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.59 E-value=0.0012 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57999999999999999998753
No 302
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.59 E-value=0.0014 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 303
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.58 E-value=0.00093 Score=56.87 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=24.6
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
..+..|+.+.|.||+||||||++..+...
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 45778999999999999999988776543
No 304
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.57 E-value=0.0014 Score=51.33 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 57899999999999999998743
No 305
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.56 E-value=0.0028 Score=58.65 Aligned_cols=26 Identities=31% Similarity=0.690 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+++|+||+|||||||+..|+..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35789999999999999999998775
No 306
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.56 E-value=0.0016 Score=54.61 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999999999875
No 307
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.55 E-value=0.0015 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999864
No 308
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.55 E-value=0.0013 Score=54.94 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 309
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.55 E-value=0.0014 Score=54.84 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|.|+.||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.54 E-value=0.0015 Score=51.53 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999999753
No 311
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.54 E-value=0.0018 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788999999999999999999875
No 312
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.54 E-value=0.0016 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998853
No 313
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.53 E-value=0.0016 Score=54.50 Aligned_cols=32 Identities=34% Similarity=0.324 Sum_probs=25.2
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
...+..-.|..+.|+||+|||||||+..|+..
T Consensus 26 Ha~~v~~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 26 HGVLVDIYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ESEEEEETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eEEEEEECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 33333456788999999999999999988754
No 314
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.51 E-value=0.0016 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 315
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.51 E-value=0.0017 Score=51.09 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999874
No 316
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.50 E-value=0.0019 Score=54.81 Aligned_cols=28 Identities=36% Similarity=0.515 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.|+.||||||+++.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999999998875
No 317
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.50 E-value=0.0015 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
++.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34557899999999999999999874
No 318
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.49 E-value=0.0017 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999998743
No 319
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.48 E-value=0.0014 Score=51.62 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
No 320
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.48 E-value=0.0016 Score=51.42 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998743
No 321
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.48 E-value=0.0018 Score=56.81 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++..+.|.||+|+|||||++.+++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467889999999999999999999775
No 322
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.48 E-value=0.0016 Score=51.93 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999885
No 323
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.47 E-value=0.002 Score=54.36 Aligned_cols=27 Identities=41% Similarity=0.565 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|.|+.||||||+++.|+..+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999999886
No 324
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.46 E-value=0.0013 Score=57.70 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999853
No 325
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.46 E-value=0.0014 Score=59.01 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5577899999999999999999999886
No 326
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.45 E-value=0.0014 Score=52.04 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 327
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.45 E-value=0.0038 Score=58.46 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.++.++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999886
No 328
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.43 E-value=0.002 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999874
No 329
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.43 E-value=0.0081 Score=56.16 Aligned_cols=30 Identities=17% Similarity=0.305 Sum_probs=27.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+.+|+++.|.|++|+|||||+..++....
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999998887664
No 330
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.42 E-value=0.002 Score=52.24 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999999853
No 331
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.41 E-value=0.0016 Score=61.65 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.7
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.+| +.|.||+|+|||||++.|++...
T Consensus 46 ~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 46 ARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 445566 77999999999999999999875
No 332
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.40 E-value=0.0021 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 57999999999999999999753
No 333
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.40 E-value=0.0025 Score=50.33 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3446899999999999999999874
No 334
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.40 E-value=0.002 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999999843
No 335
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.39 E-value=0.0016 Score=51.50 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999997643
No 336
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.39 E-value=0.0021 Score=51.82 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999974
No 337
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.39 E-value=0.0017 Score=55.46 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=22.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+|.++.|.|++||||||+++.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999885
No 338
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.38 E-value=0.002 Score=56.66 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++.|.|++||||||+++.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999999743
No 339
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.37 E-value=0.0017 Score=55.84 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|.+|+|||||++.|.|.-
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999854
No 340
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.37 E-value=0.0022 Score=50.31 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 341
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.37 E-value=0.002 Score=55.25 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999886
No 342
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.36 E-value=0.0015 Score=53.08 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 343
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.36 E-value=0.0011 Score=52.21 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 57899999999999999997643
No 344
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.36 E-value=0.0012 Score=62.21 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=30.3
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|....+-+|+.++|+|++|+|||||++.|+....
T Consensus 143 D~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 5557788999999999999999999999998765
No 345
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.36 E-value=0.0022 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++++|+.|+|||||++.|.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 67999999999999999999753
No 346
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.35 E-value=0.0011 Score=53.64 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|++|+|||||++.+.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
No 347
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.35 E-value=0.0015 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998753
No 348
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.34 E-value=0.0023 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 368999999999999999999743
No 349
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.34 E-value=0.0023 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999854
No 350
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.33 E-value=0.0021 Score=51.05 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6799999999999999999874
No 351
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0024 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 352
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.32 E-value=0.0024 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|++|+|||||++.+.+-
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999877764
No 353
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.32 E-value=0.0016 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
++.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4556889999999999999998874
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.31 E-value=0.003 Score=50.55 Aligned_cols=28 Identities=29% Similarity=0.523 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999998875
No 355
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.31 E-value=0.0024 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 679999999999999999998654
No 356
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.31 E-value=0.0026 Score=54.24 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.+++|.|..||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998874
No 357
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0015 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.28 E-value=0.0023 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5799999999999999999864
No 359
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.27 E-value=0.0017 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998743
No 360
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.27 E-value=0.0027 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 361
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.27 E-value=0.0011 Score=54.54 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=23.7
Q ss_pred Ccc-ceecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 73 REI-PVVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 73 ~~~-~~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+++ +..++. .++|+|++|+|||||++.+.+
T Consensus 17 ~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 17 QFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 444 555555 468999999999999999976
No 362
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.27 E-value=0.0031 Score=53.67 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-.+|.++.|.|++||||||+++.|...+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34688999999999999999999999886
No 363
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.27 E-value=0.0026 Score=53.68 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999886
No 364
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.26 E-value=0.0024 Score=57.15 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=26.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+++|+++.|.|++|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 48899999999999999999999998764
No 365
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.25 E-value=0.0028 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998854
No 366
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.25 E-value=0.0027 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999854
No 367
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.25 E-value=0.0025 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998754
No 368
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.24 E-value=0.0025 Score=53.13 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
--+++|+|+.|||||||++.|++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999998764
No 369
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.24 E-value=0.0017 Score=58.99 Aligned_cols=27 Identities=33% Similarity=0.345 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
...-.++|+|++|+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998854
No 370
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.23 E-value=0.0028 Score=51.81 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 371
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.23 E-value=0.0029 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999875
No 372
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.23 E-value=0.0023 Score=58.52 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 373
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.23 E-value=0.0022 Score=56.99 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999853
No 374
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.22 E-value=0.0031 Score=52.89 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++.|+||.||||+|.++.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 577999999999999999999876
No 375
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.22 E-value=0.0031 Score=53.37 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999999886
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.22 E-value=0.0026 Score=51.34 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999885
No 377
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.22 E-value=0.0029 Score=51.22 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 67999999999999999998854
No 378
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.20 E-value=0.003 Score=51.18 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999853
No 379
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.0032 Score=54.69 Aligned_cols=29 Identities=41% Similarity=0.628 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.++.-+.|.||+|+|||||++.++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 46677789999999999999999999875
No 380
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0028 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 381
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.18 E-value=0.0032 Score=50.45 Aligned_cols=22 Identities=18% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
No 382
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.16 E-value=0.003 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999884
No 383
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.15 E-value=0.0034 Score=50.85 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 384
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.15 E-value=0.0026 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998875
No 385
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.14 E-value=0.0024 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|||||||++.|.|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 386
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.13 E-value=0.0024 Score=55.31 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 57999999999999999999864
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.13 E-value=0.0034 Score=51.38 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999853
No 388
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.12 E-value=0.0032 Score=50.44 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999999853
No 389
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.11 E-value=0.0031 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34478999999999999999999854
No 390
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.11 E-value=0.0032 Score=51.18 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 391
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.11 E-value=0.0036 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 67999999999999999998743
No 392
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.11 E-value=0.0027 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.|+|+|..|+|||||++.|.|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67999999999999999999853
No 393
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.08 E-value=0.0038 Score=49.83 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 394
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.08 E-value=0.0029 Score=56.24 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345788999999999999999999885
No 395
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0034 Score=51.98 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 67999999999999999988753
No 396
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.07 E-value=0.0038 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.004 Score=50.80 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999885
No 398
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.05 E-value=0.0039 Score=50.68 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
No 399
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.004 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998853
No 400
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.04 E-value=0.004 Score=50.99 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 478999999999999999998743
No 401
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.03 E-value=0.0019 Score=55.91 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=24.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++.+++|.|+.||||||+++.|+..+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45778999999999999999999988764
No 402
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.01 E-value=0.0034 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|+|||||++.|.|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
No 403
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.01 E-value=0.0038 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67999999999999999998853
No 404
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.00 E-value=0.0035 Score=51.31 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998743
No 405
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.00 E-value=0.0039 Score=49.89 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3355678999999999999999998875
No 406
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.99 E-value=0.0043 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=21.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
...-.++|+|+.|+|||||++.+.+-.
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 344578999999999999999998743
No 407
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.99 E-value=0.0032 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999999874
No 408
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.99 E-value=0.0019 Score=65.02 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=28.1
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+.++..+.|.||+|+|||||+++|++.+.
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 3567889999999999999999999999986
No 409
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.98 E-value=0.002 Score=52.90 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997643
No 410
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.97 E-value=0.0046 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 68999999999999999988743
No 411
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.97 E-value=0.0042 Score=55.35 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999999988864
No 412
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.96 E-value=0.0036 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
.|.-+.|.|+||+|||||+..|.+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 688999999999999999999887
No 413
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.95 E-value=0.0033 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 414
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.95 E-value=0.0037 Score=50.34 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=21.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
++.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999998863
No 415
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0042 Score=51.23 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999843
No 416
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.95 E-value=0.0046 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 367999999999999999998754
No 417
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.93 E-value=0.0043 Score=51.47 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
No 418
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.93 E-value=0.0025 Score=55.50 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|++|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 419
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.92 E-value=0.0058 Score=51.13 Aligned_cols=26 Identities=35% Similarity=0.663 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|.+++|=|..||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999999885
No 420
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.92 E-value=0.0052 Score=52.48 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+||+|+.||||||+++.|+..+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998775
No 421
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.91 E-value=0.0034 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|||||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
No 422
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.91 E-value=0.0058 Score=52.16 Aligned_cols=28 Identities=36% Similarity=0.519 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....-+.|.||+|+|||||++.++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455678999999999999999999775
No 423
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.90 E-value=0.0045 Score=56.34 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=26.2
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+|+++.|.|++|+|||||+..++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988887654
No 424
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.88 E-value=0.005 Score=50.35 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=23.7
Q ss_pred cceecCCeEEEEECCCCCCHHHHHHHHHH
Q 023126 75 IPVVEARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 75 ~~~i~~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
....-.|.-+.|.|+||+|||||+..|..
T Consensus 10 s~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 10 NFLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 33445678889999999999999988775
No 425
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.87 E-value=0.0033 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36799999999999999999874
No 426
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.87 E-value=0.0046 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
--.++|+|..|+|||||++.++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35789999999999999999988754
No 427
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.86 E-value=0.0036 Score=51.45 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 428
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.86 E-value=0.0045 Score=57.90 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999875
No 429
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.84 E-value=0.0049 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999853
No 430
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.83 E-value=0.0037 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999875
No 431
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.83 E-value=0.005 Score=50.53 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 67999999999999999999843
No 432
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.81 E-value=0.0032 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998643
No 433
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.80 E-value=0.0017 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.|.|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998853
No 434
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.0049 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||+|+||||+++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999999874
No 435
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.79 E-value=0.0055 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999875
No 436
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.79 E-value=0.0026 Score=51.58 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.+.+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998765
No 437
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.77 E-value=0.0036 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999998874
No 438
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.77 E-value=0.0047 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6799999999999999999864
No 439
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.77 E-value=0.0065 Score=51.30 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVV 102 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~ 102 (287)
-+.+|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 38999999999999999999986654
No 440
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.76 E-value=0.0033 Score=50.40 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 441
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.75 E-value=0.0046 Score=53.46 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++|+|+.|+|||||++.|.|.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 442
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.72 E-value=0.005 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3447899999999999999998864
No 443
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.71 E-value=0.0043 Score=58.02 Aligned_cols=25 Identities=40% Similarity=0.622 Sum_probs=23.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+++|+|++|+||||++..|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999885
No 444
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.69 E-value=0.0047 Score=51.36 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.66 E-value=0.0065 Score=49.94 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999874
No 446
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.65 E-value=0.0084 Score=54.35 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998874
No 447
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.64 E-value=0.0051 Score=50.26 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++|+|..|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 689999999999999998887543
No 448
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.64 E-value=0.0052 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-.++++|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999999753
No 449
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.63 E-value=0.0048 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|..|+|||||++.|.|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 450
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.63 E-value=0.0051 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..++++|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5889999999999999999998654
No 451
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.61 E-value=0.0069 Score=49.93 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3447899999999999999998863
No 452
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.0079 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
No 453
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.51 E-value=0.0086 Score=49.82 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 454
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0067 Score=50.86 Aligned_cols=22 Identities=45% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|.+|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 455
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.49 E-value=0.0088 Score=57.02 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=26.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999986
No 456
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.48 E-value=0.0092 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.495 Sum_probs=24.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.++..+.|.||.|+|||||++.++..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999999875
No 457
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.46 E-value=0.0033 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=4.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998876
No 458
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.45 E-value=0.0092 Score=46.64 Aligned_cols=28 Identities=32% Similarity=0.273 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+.-+.|.||+|+|||++++.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455678999999999999999987653
No 459
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.44 E-value=0.0094 Score=52.49 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+++...+.|.||.|+|||+|++.|+..+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44456778889999999999999999875
No 460
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.42 E-value=0.0096 Score=48.74 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999998763
No 461
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.41 E-value=0.0094 Score=48.59 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999998864
No 462
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.41 E-value=0.0088 Score=49.26 Aligned_cols=23 Identities=13% Similarity=0.056 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~ 104 (287)
-.++|+|+.|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 463
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.39 E-value=0.0088 Score=53.76 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5567889999999999999999998874
No 464
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.37 E-value=0.0044 Score=53.39 Aligned_cols=23 Identities=48% Similarity=0.745 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q 023126 84 VGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 84 vgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.||+|+|||||++.|+..+.
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 67899999999999999999875
No 465
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.35 E-value=0.011 Score=57.16 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.++.|.|.+||||||+++.|+..+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999998875
No 466
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.33 E-value=0.0031 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999988853
No 467
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.31 E-value=0.012 Score=48.25 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=20.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+|.++.|.|+.||||||++.-++..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998444433
No 468
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.28 E-value=0.012 Score=52.54 Aligned_cols=28 Identities=39% Similarity=0.490 Sum_probs=24.2
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
..+..-+.|.||.|+|||||++.++..+
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3455678899999999999999999977
No 469
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.23 E-value=0.0057 Score=57.39 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+|+|||||++.|.|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999998853
No 470
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.20 E-value=0.011 Score=53.50 Aligned_cols=27 Identities=33% Similarity=0.615 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
++..+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 455688999999999999999998774
No 471
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.20 E-value=0.013 Score=57.19 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+|.++.|.|.+||||||+++.|+..+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999873
No 472
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.16 E-value=0.0097 Score=54.77 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=30.2
Q ss_pred CccceecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 73 REIPVVEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 73 ~~~~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
|..+.+-+|+..+|+|++|+|||||+..|+....
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 5557899999999999999999999999888654
No 473
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.15 E-value=0.013 Score=48.67 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 82 HIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 82 eivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
-+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999886
No 474
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.06 E-value=0.015 Score=55.41 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+++|+|++|||||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999998775
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.05 E-value=0.014 Score=50.99 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.-+.|.||.|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45677999999999999999999875
No 476
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.02 E-value=0.0095 Score=59.71 Aligned_cols=137 Identities=12% Similarity=0.073 Sum_probs=74.0
Q ss_pred ceecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcccccCCCCCCceeEEEeCCCCCCCcccCCccccHHHHHHhcC
Q 023126 76 PVVEARHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 155 (287)
Q Consensus 76 ~~i~~GeivgIiG~nGsGKSTLlk~L~G~l~~~~p~~G~i~~~~~~~~~~i~~v~qd~~~~~~~~ltv~e~i~~~~~~~~ 155 (287)
..+..|+.+.|+||+||||||++.++.+... +..|. + ..+.++. +. . .-+.+.........+
T Consensus 104 ~~l~~~~~vii~gpTGSGKTtllp~ll~~~~---~~~~~----g----~~ilvl~--P~----r-~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 104 KLYQNNQIMVFVGETGSGKTTQIPQFVLFDE---MPHLE----N----TQVACTQ--PR----R-VAAMSVAQRVAEEMD 165 (773)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHHHH---CGGGG----T----CEEEEEE--SC----H-HHHHHHHHHHHHHTT
T ss_pred HHHhCCCeEEEECCCCCCHHHHHHHHHHHhc---cccCC----C----ceEEecC--ch----H-HHHHHHHHHHHHHhC
Confidence 3477889999999999999999998877654 43320 0 1122221 10 0 000000000001111
Q ss_pred CCCCchHHHHHHHHHHhc--------cCCCCCCCCCCcccCCchhhhhhhccCccEEEEcCccc-CCCh----hhHHHHH
Q 023126 156 APWTFNPLLLLNCLKNLR--------NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDG----GVWKDVS 222 (287)
Q Consensus 156 ~~~~~~~~~~~~~l~~l~--------~~~~~~~~~lSgG~~qrv~ia~al~~~a~~li~d~~~l-llDe----~~~~~l~ 222 (287)
..-. ..++ ...+..+..+|.|+.+|..++.....+.+++|+||... .+|. .+++.+.
T Consensus 166 ~~v~----------~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 166 VKLG----------EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp CCBT----------TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred Cchh----------heecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 0000 0011 01223444678899999888877888899999999985 6664 3334444
Q ss_pred HhhcC--ce-E-EEeCHHHHHH
Q 023126 223 SMFDE--KW-F-IEVDLDTAMQ 240 (287)
Q Consensus 223 ~~~~~--~i-~-vtHd~~~~~~ 240 (287)
..... .| + .||+.+.+..
T Consensus 236 ~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 236 KRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp HHCTTCEEEEEESCSCCHHHHH
T ss_pred HhCCCceEEEEeccccHHHHHH
Confidence 33322 23 3 3788765543
No 477
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.02 E-value=0.017 Score=49.92 Aligned_cols=28 Identities=39% Similarity=0.555 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..-+.|.||.|+|||||++.++....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456788999999999999999998764
No 478
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.01 E-value=0.01 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVR 103 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G 103 (287)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445789999999999999998854
No 479
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.00 E-value=0.01 Score=55.84 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=24.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
++.|-.++|+|+.|+|||||++.|.|..
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4566779999999999999999999974
No 480
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.98 E-value=0.013 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999999864
No 481
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.98 E-value=0.015 Score=52.20 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+|..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999885
No 482
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.95 E-value=0.014 Score=48.93 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=24.7
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+...+.|.||.|+||||++.+|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455689999999999999999999875
No 483
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.95 E-value=0.01 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHH-HHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAE-VVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~-L~G~l 105 (287)
.++|+|+.|+|||||++. +.|..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999998 66654
No 484
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.93 E-value=0.028 Score=52.42 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+..+++++|++|+||||++-.|+..+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998886
No 485
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.92 E-value=0.018 Score=52.15 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=24.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..-+.|.||.|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456789999999999999999998764
No 486
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.91 E-value=0.01 Score=55.67 Aligned_cols=24 Identities=50% Similarity=0.724 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|.||+|+|||||++.|+..+.
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 487
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.91 E-value=0.018 Score=51.17 Aligned_cols=28 Identities=43% Similarity=0.583 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..-+.|.||.|+|||||++.++..+.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3455688999999999999999999875
No 488
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.90 E-value=0.019 Score=55.29 Aligned_cols=28 Identities=36% Similarity=0.425 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.|.++.|.|.+||||||+++.|...+.
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999999998774
No 489
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.89 E-value=0.016 Score=51.93 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=24.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.+.+|.++.|.||.|+|||||+..++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4677888899999999999999998864
No 490
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.83 E-value=0.02 Score=54.71 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
...++.++|.+||||||+.+.|+..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 446889999999999999999988764
No 491
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.81 E-value=0.019 Score=51.81 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 80 ARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 80 ~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+..+.|.||.|+|||||++.++..+.
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 355889999999999999999998874
No 492
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.80 E-value=0.015 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998875
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.79 E-value=0.021 Score=50.72 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.-+.|.||.|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999998763
No 494
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.77 E-value=0.021 Score=53.68 Aligned_cols=28 Identities=21% Similarity=0.512 Sum_probs=23.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
....++.++|.+||||||+++.|+..+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445789999999999999999987653
No 495
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.78 E-value=0.0052 Score=50.45 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 023126 81 RHIVGLAGPPGAGKSTLAAEVVRR 104 (287)
Q Consensus 81 GeivgIiG~nGsGKSTLlk~L~G~ 104 (287)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 346899999999999999888753
No 496
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.76 E-value=0.02 Score=47.41 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
.+.|=|.-||||||.++.|+..+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999886
No 497
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.75 E-value=0.016 Score=52.84 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=25.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 77 VVEARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 77 ~i~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
-+.+|+++.|.|++|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999998777654
No 498
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.022 Score=53.03 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 023126 78 VEARHIVGLAGPPGAGKSTLAAEVVRRIN 106 (287)
Q Consensus 78 i~~GeivgIiG~nGsGKSTLlk~L~G~l~ 106 (287)
+.+..=+.|.||.|+|||+|+++|++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 55556688999999999999999999886
No 499
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.72 E-value=0.025 Score=48.25 Aligned_cols=27 Identities=41% Similarity=0.554 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 023126 79 EARHIVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 79 ~~GeivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.+.-++.+.|..|+|||||+..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 445688999999999999999999776
No 500
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.68 E-value=0.013 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 023126 83 IVGLAGPPGAGKSTLAAEVVRRI 105 (287)
Q Consensus 83 ivgIiG~nGsGKSTLlk~L~G~l 105 (287)
.++|+|.+++|||||++.|.|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999998754
Done!