Query 023127
Match_columns 287
No_of_seqs 139 out of 1147
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0547 TrpD Anthranilate phos 100.0 6.1E-80 1.3E-84 569.6 31.1 273 1-273 63-337 (338)
2 PLN02641 anthranilate phosphor 100.0 2E-77 4.4E-82 557.9 31.1 275 1-275 62-336 (343)
3 PRK07394 hypothetical protein; 100.0 6E-75 1.3E-79 542.2 31.2 266 1-269 68-341 (342)
4 TIGR01245 trpD anthranilate ph 100.0 1.4E-72 3.1E-77 525.2 30.1 270 1-270 56-329 (330)
5 PRK00188 trpD anthranilate pho 100.0 7.4E-72 1.6E-76 522.4 31.3 274 1-274 62-337 (339)
6 PRK14607 bifunctional glutamin 100.0 7.4E-72 1.6E-76 549.9 31.1 275 1-275 254-531 (534)
7 PRK09522 bifunctional glutamin 100.0 8E-72 1.7E-76 547.2 29.7 269 1-270 259-529 (531)
8 PF00591 Glycos_transf_3: Glyc 100.0 9.4E-73 2E-77 509.2 20.0 251 12-262 1-252 (252)
9 PRK08136 glycosyl transferase 100.0 1.2E-66 2.5E-71 480.6 25.6 244 1-250 66-316 (317)
10 PRK09071 hypothetical protein; 100.0 4.6E-64 1E-68 465.1 26.8 247 1-259 67-318 (323)
11 KOG1438 Anthranilate phosphori 100.0 1.1E-63 2.4E-68 439.1 18.7 262 12-273 102-370 (373)
12 PRK06078 pyrimidine-nucleoside 100.0 4.2E-47 9.1E-52 360.9 24.1 236 1-275 62-319 (434)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 5.8E-42 1.3E-46 323.7 21.5 234 1-275 60-317 (405)
14 PRK04350 thymidine phosphoryla 100.0 8.9E-41 1.9E-45 320.7 23.2 236 1-275 140-395 (490)
15 PRK05820 deoA thymidine phosph 100.0 1.2E-33 2.7E-38 269.3 24.6 240 1-275 63-323 (440)
16 TIGR02643 T_phosphoryl thymidi 100.0 2.4E-34 5.3E-39 273.0 18.0 240 1-275 62-322 (437)
17 TIGR02645 ARCH_P_rylase putati 100.0 7E-33 1.5E-37 266.1 24.5 235 1-275 145-400 (493)
18 TIGR03327 AMP_phos AMP phospho 100.0 3E-31 6.6E-36 254.8 23.7 231 1-275 146-400 (500)
19 COG0213 DeoA Thymidine phospho 99.9 3.7E-22 8E-27 186.3 18.1 230 12-276 77-321 (435)
20 PF13344 Hydrolase_6: Haloacid 75.2 2.6 5.7E-05 32.4 2.6 58 14-71 2-59 (101)
21 TIGR01457 HAD-SF-IIA-hyp2 HAD- 67.2 57 0.0012 29.0 9.8 71 14-84 5-80 (249)
22 PRK10444 UMP phosphatase; Prov 65.7 17 0.00037 32.6 6.0 71 14-84 5-80 (248)
23 COG1212 KdsB CMP-2-keto-3-deox 63.7 1.1E+02 0.0023 27.6 10.3 109 69-192 47-164 (247)
24 PRK05703 flhF flagellar biosyn 61.6 80 0.0017 30.8 10.2 136 12-158 221-366 (424)
25 PRK11889 flhF flagellar biosyn 61.4 1E+02 0.0022 30.3 10.6 131 13-158 242-386 (436)
26 COG0773 MurC UDP-N-acetylmuram 59.4 84 0.0018 31.0 9.8 131 15-159 10-142 (459)
27 PF02374 ArsA_ATPase: Anion-tr 59.3 6.6 0.00014 36.4 2.2 46 15-65 4-49 (305)
28 COG2313 IndA Uncharacterized e 58.5 11 0.00024 34.1 3.4 78 18-98 102-195 (310)
29 COG0563 Adk Adenylate kinase a 55.0 49 0.0011 28.1 6.7 88 17-109 5-104 (178)
30 PRK12723 flagellar biosynthesi 54.9 1.5E+02 0.0033 28.6 10.7 130 12-158 174-321 (388)
31 PRK14723 flhF flagellar biosyn 54.6 2.1E+02 0.0046 30.2 12.4 130 12-158 185-332 (767)
32 COG1393 ArsC Arsenate reductas 53.7 13 0.00028 29.6 2.7 88 67-158 7-98 (117)
33 TIGR01458 HAD-SF-IIA-hyp3 HAD- 52.6 36 0.00079 30.5 5.8 73 14-86 5-86 (257)
34 PF00448 SRP54: SRP54-type pro 52.0 49 0.0011 28.5 6.4 131 14-158 3-149 (196)
35 cd00443 ADA_AMPD Adenosine/AMP 50.8 86 0.0019 28.8 8.2 98 38-150 162-274 (305)
36 PRK12724 flagellar biosynthesi 50.8 1.6E+02 0.0034 29.0 10.1 132 13-158 224-368 (432)
37 cd00287 ribokinase_pfkB_like r 46.4 1.1E+02 0.0023 25.2 7.5 17 33-49 41-57 (196)
38 TIGR00677 fadh2_euk methylenet 44.8 49 0.0011 30.3 5.4 70 78-160 22-97 (281)
39 cd02117 NifH_like This family 44.4 17 0.00037 31.3 2.3 32 15-48 3-34 (212)
40 TIGR00676 fadh2 5,10-methylene 43.2 49 0.0011 30.1 5.2 71 77-160 20-96 (272)
41 PF08844 DUF1815: Domain of un 42.5 1.2E+02 0.0027 23.2 6.3 49 140-194 20-69 (105)
42 PF02641 DUF190: Uncharacteriz 41.8 41 0.00088 25.8 3.8 30 134-163 17-47 (101)
43 PRK14721 flhF flagellar biosyn 40.4 3.3E+02 0.0072 26.6 10.7 130 12-158 191-335 (420)
44 cd01554 EPT-like Enol pyruvate 40.2 50 0.0011 31.3 5.0 97 39-151 94-197 (408)
45 COG0761 lytB 4-Hydroxy-3-methy 40.1 76 0.0016 29.4 5.8 76 34-109 106-185 (294)
46 cd02037 MRP-like MRP (Multiple 39.5 27 0.00058 28.9 2.6 31 18-50 6-36 (169)
47 COG2185 Sbm Methylmalonyl-CoA 39.3 1.3E+02 0.0028 24.9 6.5 66 74-158 29-99 (143)
48 PRK14722 flhF flagellar biosyn 39.2 3.6E+02 0.0077 25.9 12.0 90 12-108 137-240 (374)
49 KOG4201 Anthranilate synthase 39.1 1E+02 0.0022 27.6 6.1 118 69-187 88-223 (289)
50 PF11501 Nsp1: Non structural 39.1 28 0.00061 26.8 2.4 23 239-261 17-39 (115)
51 TIGR01081 mpl UDP-N-acetylmura 38.4 98 0.0021 30.0 6.8 129 17-157 4-135 (448)
52 PRK00421 murC UDP-N-acetylmura 38.4 1.1E+02 0.0024 29.8 7.2 130 15-159 10-142 (461)
53 PRK12726 flagellar biosynthesi 38.4 1.8E+02 0.0039 28.3 8.3 83 12-98 206-300 (407)
54 cd02032 Bchl_like This family 38.2 23 0.0005 31.6 2.2 32 15-48 3-34 (267)
55 PRK13230 nitrogenase reductase 37.9 24 0.00051 31.9 2.2 33 15-49 4-36 (279)
56 TIGR01287 nifH nitrogenase iro 37.4 23 0.0005 31.8 2.1 31 15-47 3-33 (275)
57 COG2313 IndA Uncharacterized e 37.3 2.4E+02 0.0052 25.8 8.3 91 18-110 130-226 (310)
58 cd00537 MTHFR Methylenetetrahy 36.6 89 0.0019 28.2 5.8 73 75-160 18-96 (274)
59 cd02040 NifH NifH gene encodes 36.3 25 0.00055 31.2 2.2 31 15-47 4-34 (270)
60 TIGR01082 murC UDP-N-acetylmur 36.2 2E+02 0.0044 27.7 8.6 128 17-159 4-134 (448)
61 PRK13232 nifH nitrogenase redu 36.2 26 0.00056 31.5 2.2 33 15-49 4-36 (273)
62 TIGR03499 FlhF flagellar biosy 36.0 1.9E+02 0.0042 26.2 8.0 65 12-83 194-269 (282)
63 PRK09432 metF 5,10-methylenete 35.9 85 0.0018 29.0 5.6 46 102-160 75-120 (296)
64 PLN02428 lipoic acid synthase 35.5 2.1E+02 0.0045 27.3 8.2 110 34-153 197-317 (349)
65 COG0240 GpsA Glycerol-3-phosph 34.9 2.5E+02 0.0054 26.6 8.5 79 30-145 12-91 (329)
66 COG0489 Mrp ATPases involved i 34.4 29 0.00062 31.5 2.2 32 17-50 63-94 (265)
67 COG0647 NagD Predicted sugar p 34.4 1.7E+02 0.0037 26.7 7.2 128 13-151 11-147 (269)
68 cd01983 Fer4_NifH The Fer4_Nif 34.3 33 0.00071 24.4 2.2 31 17-49 4-34 (99)
69 PRK12737 gatY tagatose-bisphos 34.2 47 0.001 30.6 3.6 35 18-54 180-214 (284)
70 PRK13236 nitrogenase reductase 33.2 32 0.0007 31.5 2.4 77 13-92 7-93 (296)
71 TIGR02016 BchX chlorophyllide 32.9 33 0.00071 31.6 2.4 36 15-52 3-38 (296)
72 COG1936 Predicted nucleotide k 32.6 46 0.001 28.6 3.0 26 15-46 3-28 (180)
73 PRK13957 indole-3-glycerol-pho 32.3 1.8E+02 0.0039 26.2 6.9 120 69-189 58-190 (247)
74 PRK13185 chlL protochlorophyll 32.2 32 0.00069 30.7 2.1 76 14-92 4-89 (270)
75 PRK12857 fructose-1,6-bisphosp 32.1 55 0.0012 30.2 3.7 36 17-54 179-214 (284)
76 COG0003 ArsA Predicted ATPase 31.7 40 0.00086 31.7 2.7 46 15-65 5-50 (322)
77 PF13207 AAA_17: AAA domain; P 31.5 32 0.0007 26.2 1.8 26 16-46 3-28 (121)
78 PF01656 CbiA: CobQ/CobB/MinD/ 30.8 33 0.00071 28.4 1.9 31 18-50 5-35 (195)
79 PF07429 Glyco_transf_56: 4-al 30.8 1.7E+02 0.0037 27.9 6.7 93 36-148 261-355 (360)
80 KOG3347 Predicted nucleotide k 30.7 46 0.001 28.1 2.6 32 12-49 8-39 (176)
81 KOG1220 Phosphoglucomutase/pho 30.7 1.1E+02 0.0023 31.1 5.6 117 20-144 107-233 (607)
82 TIGR01459 HAD-SF-IIA-hyp4 HAD- 29.9 1.3E+02 0.0027 26.5 5.6 57 13-70 11-67 (242)
83 PF01364 Peptidase_C25: Peptid 29.9 93 0.002 29.4 5.0 69 88-161 3-74 (378)
84 PLN02645 phosphoglycolate phos 29.7 82 0.0018 29.0 4.5 71 14-84 32-107 (311)
85 COG1348 NifH Nitrogenase subun 29.5 73 0.0016 28.9 3.8 61 15-77 4-74 (278)
86 CHL00072 chlL photochlorophyll 29.3 40 0.00087 30.9 2.3 34 16-51 4-37 (290)
87 COG0707 MurG UDP-N-acetylgluco 28.7 1.4E+02 0.003 28.4 5.9 72 17-96 95-166 (357)
88 PRK12928 lipoyl synthase; Prov 28.7 2.1E+02 0.0045 26.4 6.9 107 36-153 157-274 (290)
89 PLN02540 methylenetetrahydrofo 28.5 1.1E+02 0.0024 31.1 5.4 71 77-160 20-96 (565)
90 TIGR01007 eps_fam capsular exo 28.2 1E+02 0.0023 26.0 4.6 34 12-47 17-51 (204)
91 PRK09195 gatY tagatose-bisphos 27.7 69 0.0015 29.5 3.5 35 18-54 180-214 (284)
92 PRK09435 membrane ATPase/prote 27.2 1.3E+02 0.0028 28.4 5.3 45 12-58 56-100 (332)
93 PF03721 UDPG_MGDP_dh_N: UDP-g 27.2 64 0.0014 27.5 3.0 25 15-46 3-27 (185)
94 PF00142 Fer4_NifH: 4Fe-4S iro 27.1 38 0.00083 31.0 1.7 36 15-52 3-38 (273)
95 cd02036 MinD Bacterial cell di 27.0 48 0.001 27.0 2.2 31 18-50 6-36 (179)
96 COG0106 HisA Phosphoribosylfor 26.9 2.7E+02 0.0059 25.1 7.0 80 72-154 31-125 (241)
97 PRK13235 nifH nitrogenase redu 26.8 47 0.001 29.8 2.2 32 15-48 4-35 (274)
98 PF07131 DUF1382: Protein of u 26.3 60 0.0013 22.6 2.1 23 76-98 14-36 (61)
99 TIGR01281 DPOR_bchL light-inde 26.1 46 0.001 29.6 2.1 31 16-48 4-34 (268)
100 COG3448 CBS-domain-containing 26.1 3E+02 0.0066 25.9 7.2 85 44-152 186-277 (382)
101 PF14207 DpnD-PcfM: DpnD/PcfM- 26.1 71 0.0015 21.3 2.4 19 242-260 18-36 (48)
102 cd00550 ArsA_ATPase Oxyanion-t 26.0 43 0.00094 29.9 1.8 42 17-63 5-46 (254)
103 PRK07709 fructose-bisphosphate 25.9 80 0.0017 29.1 3.6 36 17-54 180-215 (285)
104 cd04724 Tryptophan_synthase_al 25.8 2.3E+02 0.0049 25.2 6.4 91 66-157 8-110 (242)
105 KOG2825 Putative arsenite-tran 25.7 2E+02 0.0042 26.6 5.9 34 15-50 22-55 (323)
106 COG3804 Uncharacterized conser 25.6 58 0.0013 30.3 2.5 114 17-151 7-124 (350)
107 PRK08610 fructose-bisphosphate 25.5 83 0.0018 29.0 3.6 36 17-54 180-215 (286)
108 KOG1805 DNA replication helica 24.9 1.5E+02 0.0033 32.1 5.7 36 12-50 686-721 (1100)
109 PLN02460 indole-3-glycerol-pho 24.9 2E+02 0.0044 27.3 6.1 120 69-189 136-270 (338)
110 PF13344 Hydrolase_6: Haloacid 24.9 49 0.0011 25.2 1.7 61 46-109 9-79 (101)
111 PF14852 Fis1_TPR_N: Fis1 N-te 24.8 66 0.0014 19.9 2.0 31 229-259 4-34 (35)
112 TIGR01452 PGP_euk phosphoglyco 24.7 1.1E+02 0.0024 27.6 4.3 70 14-83 6-80 (279)
113 TIGR01460 HAD-SF-IIA Haloacid 24.7 1.5E+02 0.0032 26.1 5.0 70 14-83 2-77 (236)
114 PRK12339 2-phosphoglycerate ki 24.7 70 0.0015 27.6 2.9 32 14-50 5-36 (197)
115 PRK04940 hypothetical protein; 24.6 1.9E+02 0.0041 24.8 5.4 42 120-161 87-134 (180)
116 TIGR00167 cbbA ketose-bisphosp 24.6 93 0.002 28.7 3.8 33 21-54 185-218 (288)
117 PRK10853 putative reductase; P 24.5 57 0.0012 25.8 2.1 53 67-119 6-60 (118)
118 PRK00162 glpE thiosulfate sulf 24.3 2.7E+02 0.0059 20.7 5.9 22 71-92 6-27 (108)
119 PRK08118 topology modulation p 24.1 68 0.0015 26.7 2.6 26 16-46 5-30 (167)
120 COG0771 MurD UDP-N-acetylmuram 24.1 57 0.0012 32.1 2.4 36 17-54 113-148 (448)
121 PF02310 B12-binding: B12 bind 23.6 3.3E+02 0.0071 20.6 7.2 74 74-163 40-115 (121)
122 PRK05835 fructose-bisphosphate 23.4 94 0.002 29.0 3.6 31 24-55 187-217 (307)
123 PRK07261 topology modulation p 23.4 78 0.0017 26.4 2.9 28 16-48 4-31 (171)
124 TIGR01858 tag_bisphos_ald clas 23.2 96 0.0021 28.6 3.6 33 21-54 180-212 (282)
125 PF06564 YhjQ: YhjQ protein; 23.1 62 0.0013 29.2 2.2 33 14-48 3-36 (243)
126 cd01423 MGS_CPS_I_III Methylgl 23.1 2E+02 0.0044 22.1 5.0 53 31-91 15-77 (116)
127 COG0493 GltD NADPH-dependent g 23.0 7.1E+02 0.015 24.5 9.8 122 31-157 135-292 (457)
128 TIGR03029 EpsG chain length de 22.8 59 0.0013 29.1 2.1 30 18-49 110-139 (274)
129 cd02020 CMPK Cytidine monophos 22.6 96 0.0021 24.2 3.1 30 15-49 2-31 (147)
130 PRK07084 fructose-bisphosphate 22.6 1.8E+02 0.004 27.3 5.3 28 27-55 202-230 (321)
131 cd02035 ArsA ArsA ATPase funct 22.4 59 0.0013 28.2 2.0 34 17-52 4-37 (217)
132 PF01116 F_bP_aldolase: Fructo 22.3 73 0.0016 29.4 2.6 37 17-54 179-217 (287)
133 PF00690 Cation_ATPase_N: Cati 22.3 1.4E+02 0.003 20.7 3.6 37 57-93 4-42 (69)
134 PF04343 DUF488: Protein of un 21.5 79 0.0017 24.8 2.4 29 72-100 31-59 (122)
135 PF13627 LPAM_2: Prokaryotic l 21.5 72 0.0016 18.1 1.5 14 31-44 5-18 (24)
136 PF04227 Indigoidine_A: Indigo 21.4 1.6E+02 0.0034 27.4 4.6 116 18-158 89-220 (293)
137 TIGR00044 pyridoxal phosphate 20.8 2.2E+02 0.0047 25.0 5.3 81 74-157 40-125 (229)
138 COG3640 CooC CO dehydrogenase 20.8 66 0.0014 29.1 1.9 32 15-48 3-35 (255)
139 PF03960 ArsC: ArsC family; I 20.7 71 0.0015 24.5 1.9 90 67-159 2-95 (110)
140 COG0033 Pgm Phosphoglucomutase 20.7 1E+02 0.0023 30.4 3.3 43 21-63 60-104 (524)
141 PF00218 IGPS: Indole-3-glycer 20.4 57 0.0012 29.6 1.5 110 69-179 65-187 (254)
142 PRK02705 murD UDP-N-acetylmura 20.4 7.3E+02 0.016 23.8 9.3 126 17-153 5-138 (459)
143 cd02072 Glm_B12_BD B12 binding 20.3 4.6E+02 0.01 21.1 7.8 88 33-153 18-111 (128)
144 PRK12738 kbaY tagatose-bisphos 20.3 1.3E+02 0.0029 27.7 3.9 33 21-54 182-214 (286)
145 PRK03803 murD UDP-N-acetylmura 20.3 3.6E+02 0.0077 26.0 7.1 129 12-155 6-139 (448)
146 COG0135 TrpF Phosphoribosylant 20.2 3.4E+02 0.0073 23.9 6.2 37 128-165 53-90 (208)
147 cd03035 ArsC_Yffb Arsenate Red 20.1 70 0.0015 24.6 1.8 55 67-121 5-61 (105)
No 1
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-80 Score=569.63 Aligned_cols=273 Identities=53% Similarity=0.825 Sum_probs=264.7
Q ss_pred CccccccccCCCC-cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHH
Q 023127 1 MIKYATKVEGLGD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (287)
Q Consensus 1 ~~~~~~~~~~~~~-~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~ 79 (287)
|++++.+++.++. .+|+|||||||.+||||||++|+++|++|+||+|||||++|||+||+|+||+|||+++.+++++++
T Consensus 63 m~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~ 142 (338)
T COG0547 63 MREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAAR 142 (338)
T ss_pred HHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHH
Confidence 6777777776533 399999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023127 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (287)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (287)
+|++.||+|||+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++++++++.+|.++++||||
T Consensus 143 ~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G 222 (338)
T COG0547 143 ALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHG 222 (338)
T ss_pred HHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHH
Q 023127 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLV 238 (287)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~d~v~~naa~~L~~ 238 (287)
+|+||++|.+.|.|+++++|++++|+++|+|||++..++++++++++++|+++++++|+|+.++.+|+|++|||++||+
T Consensus 223 ~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~~Naa~~L~~ 302 (338)
T COG0547 223 LEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVALNAAAALYA 302 (338)
T ss_pred CCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Q 023127 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (287)
Q Consensus 239 ~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (287)
.|+++|++||+++|+++|+||+|+++|++++.+++
T Consensus 303 ~g~a~~l~eg~~~A~~~i~sG~a~~~l~~l~~~~~ 337 (338)
T COG0547 303 AGKAESLKEGIALALEAIDSGAALEKLEELVAFSK 337 (338)
T ss_pred cCccCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999876
No 2
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=2e-77 Score=557.93 Aligned_cols=275 Identities=82% Similarity=1.202 Sum_probs=265.6
Q ss_pred CccccccccCCCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHH
Q 023127 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (287)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~ 80 (287)
|++++.+++..+..+|+|||||||++||||||++|+++|++|+||+|||||++||++||+|+||+|||+++.+++++.++
T Consensus 62 ~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~ 141 (343)
T PLN02641 62 MIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRC 141 (343)
T ss_pred HHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 46677767644568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecC
Q 023127 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (287)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~Ge 160 (287)
|++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||||+
T Consensus 142 l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G~ 221 (343)
T PLN02641 142 VEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSE 221 (343)
T ss_pred HHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcC
Q 023127 161 GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVSC 240 (287)
Q Consensus 161 G~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~d~v~~naa~~L~~~G 240 (287)
|+||++|.++|+++++.+|++.++.++|+|||+++.+++++.++++++|+++++++|+|+.++++|+|++|||++||++|
T Consensus 222 G~DEis~~g~t~v~~~~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~~~~~~d~v~lNaa~~L~~~g 301 (343)
T PLN02641 222 GLDEMSPLGPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGEKGAIADALILNAAAALLVSG 301 (343)
T ss_pred CCCccccCcceEEEEEeCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999977899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 241 KVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 241 ~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+++|++||+++|+++|+||+|+++|++|++.+++.
T Consensus 302 ~~~sl~eg~~~A~~~i~sG~a~~~l~~~~~~~~~~ 336 (343)
T PLN02641 302 LAKTLAEGVALARETQESGKAIKTLDSWIKISQEL 336 (343)
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998764
No 3
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=6e-75 Score=542.23 Aligned_cols=266 Identities=23% Similarity=0.291 Sum_probs=253.3
Q ss_pred CccccccccCC-C-CcceeeCCCCCCC-CCccchHHHHHHHHhCCCcEEeecCCCCCCcCC--HHHHHHHcCCCCCC-CH
Q 023127 1 MIKYATKVEGL-G-DAVDIVGTGGDGA-NTVNISTGASILAAACGAKVAKQGSRSSSSACG--SADVLEALGVVIDL-DP 74 (287)
Q Consensus 1 ~~~~~~~~~~~-~-~~~D~~gtggdG~-~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G--s~dvLeaLGi~~~~-s~ 74 (287)
|++++.+++.+ + .++|+|||||||+ +||||||++|+++|++|+||+|||||++||++| |+|+||+|||+++. ++
T Consensus 68 ~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~ 147 (342)
T PRK07394 68 YDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSL 147 (342)
T ss_pred HHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCH
Confidence 46777777543 2 4789999999997 799999999999999999999999999999999 99999999999998 99
Q ss_pred HHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCC-CCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023127 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-ACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (287)
Q Consensus 75 e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP-~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (287)
+++.++|++.||+|+++|.|||+|++++++|++||+||+||++|||+|| ++++++|+|||||+|.++|+++++.+|.++
T Consensus 148 ~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~ 227 (342)
T PRK07394 148 EQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHPPTEARAWEALELRGETN 227 (342)
T ss_pred HHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999999999999999 689999999999999999999999999999
Q ss_pred EEEEec-CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchHHHHHHHHH
Q 023127 154 ALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNA 232 (287)
Q Consensus 154 ~lvv~G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~d~v~~na 232 (287)
++|||| +|+||+++.++|.++++.+|+++++.++|+|||++.. +++++++++|+++++++|+|+.++++|+|++||
T Consensus 228 ~~vv~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~d~G~~~~---~l~~~~~~~na~~~~~vl~G~~~~~~~~v~lNa 304 (342)
T PRK07394 228 FTTVKGLEGSCDLPISRTAIIGRVQNGHFERLILHPRDYGCGGK---DVPWESTEEWLEQAQAALNGEPGPLTQALIWNG 304 (342)
T ss_pred EEEEEcCCCceeccCCCCeEEEEEcCCeEEEEEECHHHcCCCcc---cCCCCCHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 999999 9999999999999999999999999999999999864 567889999999999999999888889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHH
Q 023127 233 AAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWI 269 (287)
Q Consensus 233 a~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~ 269 (287)
|++||++|+++|++||+++|+++|+||+|+++|++|+
T Consensus 305 a~~L~~~g~~~s~~eg~~~A~~~i~sG~a~~~l~~~~ 341 (342)
T PRK07394 305 GFYLWRAGISSSLEEGIEKAEELLNSGKALQKLQQLI 341 (342)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 9999999999999999999999999999999999996
No 4
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=1.4e-72 Score=525.25 Aligned_cols=270 Identities=54% Similarity=0.850 Sum_probs=258.8
Q ss_pred CccccccccC--CCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHH
Q 023127 1 MIKYATKVEG--LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (287)
Q Consensus 1 ~~~~~~~~~~--~~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~ 78 (287)
|++++.+++. .+.++|+|||||||++||||||++|+++|++|+||+|||+|++++++|++|+||+|||+++.++++++
T Consensus 56 ~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~ 135 (330)
T TIGR01245 56 MREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVA 135 (330)
T ss_pred HHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHH
Confidence 4566666643 24589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
++|++.||+|+++|.|||+|++++++|++||+||+|||++||+||++++++|+|||||+|.++|+++++.+|.++++||+
T Consensus 136 ~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~ 215 (330)
T TIGR01245 136 RSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVH 215 (330)
T ss_pred HHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC-chHHHHHHHHHHHHH
Q 023127 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAAL 236 (287)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~d~v~~naa~~L 236 (287)
| +|+||++|.++|+|+++++|++.++.|+|+|||++..++++++++++++|+++++++|+|+. +++.|+|++|+|++|
T Consensus 216 G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~~~~~~v~lnaA~~L 295 (330)
T TIGR01245 216 GDDGLDEISLTGPTTVAELKDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSGAKRDIVALNAAAAL 295 (330)
T ss_pred CCCCceeecCCCcEEEEEEECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999888888888899999999999999995 689999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHH
Q 023127 237 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIE 270 (287)
Q Consensus 237 ~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~ 270 (287)
|++|+++|++||+++|+++|+||+|+++|++|++
T Consensus 296 ~~~g~~~s~~e~~~~a~~~i~sG~a~~~l~~~~~ 329 (330)
T TIGR01245 296 YVAGRASDLKEGVELALEAIDSGAAAEKLEELVA 329 (330)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 5
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.4e-72 Score=522.40 Aligned_cols=274 Identities=54% Similarity=0.840 Sum_probs=261.4
Q ss_pred CccccccccCCCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHH
Q 023127 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (287)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~ 80 (287)
|++++.+++.+++++|+|||||||++||||||++|+++|++|+||+|||++++++++|++|+||+||++++.+++++.+.
T Consensus 62 ~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~~~~~~~~~ 141 (339)
T PRK00188 62 MREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLSPEQVARC 141 (339)
T ss_pred HHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHH
Confidence 45666666554468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-
Q 023127 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (287)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G- 159 (287)
|+++||+|+++|.|||+|++++++|++||+||+|||++||+||++++++|+|||||+|.++|+++++.+|+++++||||
T Consensus 142 l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~ 221 (339)
T PRK00188 142 LEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGS 221 (339)
T ss_pred HHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHH
Q 023127 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGAIADALILNAAAALLV 238 (287)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~-~~~~~d~v~~naa~~L~~ 238 (287)
||+||++|.++|+|+++++|++.++.++|++||++..+.+++.+.++++|+++++++|+|+ .+++.+.+++|+|++||+
T Consensus 222 ~G~dE~~~~~~t~v~~~~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~G~~~~~~~~~v~lnaA~~L~~ 301 (339)
T PRK00188 222 DGLDEISLTGPTTVAELKDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQGKGPGAARDAVLLNAAAALYV 301 (339)
T ss_pred CCceeecCCCCEEEEEEcCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988777788889999999999999996 578999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhh
Q 023127 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKI 274 (287)
Q Consensus 239 ~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~ 274 (287)
+|+++|++||+++|+++|+||+|+++|++|++.+++
T Consensus 302 ~g~~~s~~e~~~~A~~~i~sG~a~~~l~~~~~~~~~ 337 (339)
T PRK00188 302 AGKADDLKEGVELAREAIDSGAALAKLEELVAFSQE 337 (339)
T ss_pred cCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998764
No 6
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.4e-72 Score=549.87 Aligned_cols=275 Identities=41% Similarity=0.673 Sum_probs=264.6
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHH
Q 023127 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (287)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~ 79 (287)
|++++.+++.+ +.++|+|||||||++||||||++|+++|++|+||+|||||++|+++||+|+||+||++++.|++++.+
T Consensus 254 ~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~~~~~~~~~ 333 (534)
T PRK14607 254 MREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAAS 333 (534)
T ss_pred HHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56777777653 45899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023127 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (287)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (287)
+|++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 334 ~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G 413 (534)
T PRK14607 334 VLRETGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSG 413 (534)
T ss_pred HHHHhCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHH
Q 023127 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALL 237 (287)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~d~v~~naa~~L~ 237 (287)
+|+||++|.++|+++++.+|++.++.++|++||++..+.+++.++++++|+++++++|+|+. ++++|+|++|||++||
T Consensus 414 ~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~lnaA~~L~ 493 (534)
T PRK14607 414 IDGYDEISTCGPTQILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVALNAGAALY 493 (534)
T ss_pred CCCCccccCCCceEEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988888988999999999999999995 7899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 238 ~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
++|+++|++||+++|+++|+||+|+++|++|++.++++
T Consensus 494 ~~g~~~s~~eg~~~a~~~i~sG~a~~~l~~~~~~~~~~ 531 (534)
T PRK14607 494 LVGEADSIKEGVGKALDLIDDGRAYKKLEEVMDLSKTL 531 (534)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998764
No 7
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=8e-72 Score=547.18 Aligned_cols=269 Identities=38% Similarity=0.659 Sum_probs=257.8
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHH
Q 023127 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (287)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~ 79 (287)
|++++.+++.. +.++|+|||||||++||||||++|+++|++|+||+|||||++|+++|++|+||+|||+++.+++++.+
T Consensus 259 ~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~~~~~~~~~ 338 (531)
T PRK09522 259 LLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQ 338 (531)
T ss_pred HHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56677777543 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023127 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (287)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (287)
+|++.||+|+|+|.|||+|++++++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 339 ~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G 418 (531)
T PRK09522 339 ALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS 418 (531)
T ss_pred HHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHHH
Q 023127 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALLV 238 (287)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~-~~~d~v~~naa~~L~~ 238 (287)
+|+||+|+.++|+|+++++|++++++++|+|||++..+++++.++++++|+++++++|+|+.. ...++|++|||++||+
T Consensus 419 ~G~DEis~~~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~~naa~~l~~ 498 (531)
T PRK09522 419 GGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRL 498 (531)
T ss_pred CCccccCCCCceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999953 4568999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccHHHHHHHHHHH
Q 023127 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIE 270 (287)
Q Consensus 239 ~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~ 270 (287)
.|. +|++||+++|+++|+||+|+++|++|++
T Consensus 499 ~g~-~~l~~g~~~a~~~i~sG~a~~~l~~l~~ 529 (531)
T PRK09522 499 HGH-EDLQANAQTVLEVLRSGSAYDRVTALAA 529 (531)
T ss_pred cCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 996 8999999999999999999999999976
No 8
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=9.4e-73 Score=509.17 Aligned_cols=251 Identities=51% Similarity=0.812 Sum_probs=237.9
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS 91 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~ 91 (287)
++++|+|||||||.+||||||++|+++|++|+||+|||||++++++|++|+||+|||++++|+++++++|+++||+|+++
T Consensus 1 ~~~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~ 80 (252)
T PF00591_consen 1 KPVVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFA 80 (252)
T ss_dssp TTEEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEH
T ss_pred CCceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecCCccccccCCce
Q 023127 92 TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPG 171 (287)
Q Consensus 92 ~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t 171 (287)
|.|||+|++++++|++||+||+||+++||+||++++++++|||||+|.++|+++++.+|+++++||+|||+||+++.++|
T Consensus 81 ~~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G~G~dE~~~~~~t 160 (252)
T PF00591_consen 81 PNFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKGEGSDEISPLGPT 160 (252)
T ss_dssp HHHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEETTBSSHHHSSHE
T ss_pred hhcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchH-HHHHHHHHHHHHHHcCCCCCHHHHHH
Q 023127 172 LILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAI-ADALILNAAAALLVSCKVNTLAEGVA 250 (287)
Q Consensus 172 ~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~-~d~v~~naa~~L~~~G~~~s~~eg~~ 250 (287)
+++++++|++.++.++|++||++..+.+++..+++++++++++++|+|+.+++ +|+|++|||++||++|+++|++||++
T Consensus 161 ~v~~~~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~~nAa~~L~~~g~~~s~~eg~~ 240 (252)
T PF00591_consen 161 RVYELKNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVLLNAAAALYVAGKASSLEEGVE 240 (252)
T ss_dssp EEEEHHTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSSHHHHHH
T ss_pred EEEeecCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999888888888899999999999999998765 89999999999999999999999999
Q ss_pred HHHHHHHccHHH
Q 023127 251 LAREIQLSGKAL 262 (287)
Q Consensus 251 ~A~~~l~sG~a~ 262 (287)
+|+++|+||+|+
T Consensus 241 ~a~e~i~sG~Al 252 (252)
T PF00591_consen 241 KAREAIDSGKAL 252 (252)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHcCCCC
Confidence 999999999996
No 9
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=1.2e-66 Score=480.59 Aligned_cols=244 Identities=19% Similarity=0.229 Sum_probs=229.0
Q ss_pred CccccccccCC--C-CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHH
Q 023127 1 MIKYATKVEGL--G-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (287)
Q Consensus 1 ~~~~~~~~~~~--~-~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~ 77 (287)
|++++.+++.+ . .++|+||||||++ ||||||++|+++|++|+||+|||||++|+|+||+|+||+|||+++.+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~iD~~gtgGd~~-t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~ 144 (317)
T PRK08136 66 MQAHTIPLTPPAGRPMPVVIPSYNGARK-QANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQA 144 (317)
T ss_pred HHHhCCcCCCCCCCCceEEeCCCCCCCC-CcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHH
Confidence 46777777543 2 3799999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCC--CCCCceEEeeeChhhHHHHHHHHHHcCCCeEE
Q 023127 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--ACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (287)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP--~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~l 155 (287)
+++|++.||+|+++|.|||+|++++++|++||+||+|||+|||+|| ++++++|+|||||+|.++|+++++.+|. +++
T Consensus 145 ~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 145 QAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred HHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9999999999999999999999999999999999999999999999 6899999999999999999999999998 999
Q ss_pred EEec-CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCC-CCCChHHHHHHHHHHHCCCCchHHHHHHHHHH
Q 023127 156 VVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL-QGGGPAYNAEVLRRVLSGERGAIADALILNAA 233 (287)
Q Consensus 156 vv~G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~-~~~~~~~~a~~~~~vL~G~~~~~~d~v~~naa 233 (287)
|||| ||+||++|+++|+|+++.+|+++ +.++|+++|++..+ ++ .++++++|+++++++|+|+ .+.+|+|++|||
T Consensus 224 vv~G~~G~dE~s~~~~t~v~~~~~g~~~-~~~~p~~~g~~~~~--~~~~~~~~~~na~~~~~vL~G~-~~~~d~v~lNaa 299 (317)
T PRK08136 224 LMRGTEGEVYANPRRCPQIDWIHDGGCR-VLVERQSGSADEPP--ELPAAKDAATTAAWIERVLAGE-VPVPESIARQVA 299 (317)
T ss_pred EEEcCCCceeecCCCCceEEEEeCCEEE-EEECHHHcCCccCc--hhccCCCHHHHHHHHHHHHCCC-CCcchHHHHHHH
Confidence 9999 99999999999999999999988 99999999998865 55 6889999999999999996 366799999999
Q ss_pred HHHHHcCCCCCHHHHHH
Q 023127 234 AALLVSCKVNTLAEGVA 250 (287)
Q Consensus 234 ~~L~~~G~~~s~~eg~~ 250 (287)
++||++|+++|++||+.
T Consensus 300 ~~l~~~g~~~~~~~g~~ 316 (317)
T PRK08136 300 CCLVAAGEAATIEDGLA 316 (317)
T ss_pred HHHHHcCccCCHHHhhc
Confidence 99999999999999975
No 10
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=4.6e-64 Score=465.10 Aligned_cols=247 Identities=19% Similarity=0.190 Sum_probs=227.9
Q ss_pred CccccccccCCCCccee-eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCC-HHHHHHHcCCCCCCCHHHHH
Q 023127 1 MIKYATKVEGLGDAVDI-VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDLDPEGVR 78 (287)
Q Consensus 1 ~~~~~~~~~~~~~~~D~-~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G-s~dvLeaLGi~~~~s~e~~~ 78 (287)
|++++.+++. +..+|+ ||||+|+..++ ++++|+++|++|+||+|||||+++|++| |+|+||+|||+++.+++++.
T Consensus 67 ~r~~~~~~~~-~~~iD~~~gtG~d~~~~~--~~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~ 143 (323)
T PRK09071 67 IRERLQAPPL-AVDLDWPSYAGKRRHLPW--YLLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAE 143 (323)
T ss_pred HHHhcccCCC-CCceecCCcCCCCCCccc--HHHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHH
Confidence 5677777753 345998 99999966665 5899999999999999999999999986 99999999999999999999
Q ss_pred HHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
++|++.||+|+++|.|||+|++++++|++||+||+||++|||+||++++++|+|||||+|.++|+++++.+|.++++|||
T Consensus 144 ~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv~ 223 (323)
T PRK09071 144 QALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVFK 223 (323)
T ss_pred HHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC-ch-HHHHHHHHHHHH
Q 023127 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA-IADALILNAAAA 235 (287)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~-~~d~v~~naa~~ 235 (287)
| +|+||++|.++|+|+++++|++.++.++ +||++..+ .++++|+++++++|+|+. ++ ..|+|++|||++
T Consensus 224 G~~G~dE~s~~~~t~v~~~~~g~i~~~~~~--~~g~~~~~------~~~~~na~~~~~vl~G~~~~~~~~d~v~~Naa~a 295 (323)
T PRK09071 224 GEGGESERNPDVSTTLYGSRNGEAWDEEWP--ALSEERHV------KPEELDPEQLLAVWRGEEEDEYGENAVIATMALA 295 (323)
T ss_pred CCCCceeecCCCceEEEEEcCCeEEEEEec--ccccccCC------CCcccCHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999885 48877543 278899999999999985 44 458999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcc
Q 023127 236 LLVSCKVNTLAEGVALAREIQLSG 259 (287)
Q Consensus 236 L~~~G~~~s~~eg~~~A~~~l~sG 259 (287)
|| .|+++|++||+++|+++|+++
T Consensus 296 L~-~g~~~sl~eg~~~A~~~w~~r 318 (323)
T PRK09071 296 LW-RGLNQSREEAFEKAAQLWATR 318 (323)
T ss_pred HH-cCCCCCHHHHHHHHHHHHHHh
Confidence 99 999999999999999999876
No 11
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-63 Score=439.13 Aligned_cols=262 Identities=62% Similarity=0.990 Sum_probs=249.8
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC-CCHHHHHHHHHhcCeEEEe
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-LDPEGVRRCVDEAGIGFMM 90 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~-~s~e~~~~~l~~~g~~fl~ 90 (287)
++++||+||||||.||||+||.+|+++|.||.+|.||||++-+|.+|++|+|++||+++- .+++.+.++.++.+|.|++
T Consensus 102 ~~~vDIVGTGGDG~NTfNvST~saIvAag~GlkvcKhGnkaStSasGsaDll~~lGCd~l~v~p~~i~~~~e~~~f~Fl~ 181 (373)
T KOG1438|consen 102 EDAVDIVGTGGDGANTFNVSTGSAIVAAGCGLKVCKHGNKASTSASGSADLLEALGCDVLDVGPEGIKRCVEEGGFGFLM 181 (373)
T ss_pred CceeEEeccCCCCcceeeecchHHHHHhcccchhhhcCCccccccCccHHHHHhcCceeeccCCcccccccccCceeEEe
Confidence 578999999999999999999999999999999999999999999999999999997654 8899999999999999999
Q ss_pred CCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCccccccCC
Q 023127 91 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLG 169 (287)
Q Consensus 91 ~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~ 169 (287)
+|-|||+|+.+.++|++||++|+||++|||+||++..++++||||+++.+.|+++++++|..+-.+|.| .|+||+||.+
T Consensus 182 aPm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G 261 (373)
T KOG1438|consen 182 APMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLG 261 (373)
T ss_pred chhhcccccchhHHHHhcCCccHHHhcccccCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999987777777 9999999999
Q ss_pred ceeEEEEeCCe--EEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHHcCCCCC
Q 023127 170 PGLILDVTQEK--IERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER---GAIADALILNAAAALLVSCKVNT 244 (287)
Q Consensus 170 ~t~v~~~~~g~--~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~---~~~~d~v~~naa~~L~~~G~~~s 244 (287)
+|.+|.+++++ +++|.++|.+||+++++++++.++.|.+||-..+++|+|+. +|++|.+++|+|++|.+++.+.+
T Consensus 262 ~t~vw~v~~se~k~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~lmNtAall~vs~~~q~ 341 (373)
T KOG1438|consen 262 GTLVWDVTPSEEKIEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYLLMNTAALLLVSNRVQT 341 (373)
T ss_pred CceEEEecCCceeeeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999865 57888999999999999999999999999999999999984 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhh
Q 023127 245 LAEGVALAREIQLSGKALNTLDLWIEVSK 273 (287)
Q Consensus 245 ~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (287)
|+||+..|++.|.||+|++.|+.|+..++
T Consensus 342 l~EGv~~A~esisSG~Alr~L~~fi~~~s 370 (373)
T KOG1438|consen 342 LAEGVTVARESISSGKALRTLDSFINISS 370 (373)
T ss_pred HHhhhHHHHHhhcchHHHHHHHHHHhhhh
Confidence 99999999999999999999999996654
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=4.2e-47 Score=360.94 Aligned_cols=236 Identities=23% Similarity=0.286 Sum_probs=213.8
Q ss_pred CccccccccCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCHHH
Q 023127 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (287)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~e~ 76 (287)
|++.+.+++.+ +.++|+|||||||.+||| ++|+++|+||++|+|||||+++|++||+|+||+| |+++++|+++
T Consensus 62 M~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~n---i~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~ 138 (434)
T PRK06078 62 MVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTL---VLAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQED 138 (434)
T ss_pred HHHhCCcccCcccCCCeeEecCCCCCCCCchH---HHHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHH
Confidence 55667777542 348999999999999998 4899999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCeEEEeC-CccchhhhhhHHHHhhhCCCChhHhhhhccCC--------CCCCceEEeee--------ChhhH
Q 023127 77 VRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGVY--------NENLV 139 (287)
Q Consensus 77 ~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP--------~~~~~~v~Gv~--------h~~~~ 139 (287)
+.++|++.||+|+++ |.|||++++++++|++++ | ||.+ ||+|| ++++++|+||+ +++..
T Consensus 139 ~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~--t-~n~l-PLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a 214 (434)
T PRK06078 139 FIKLVNENKVAVIGQSGNLTPADKKLYALRDVTA--T-VNSI-PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDA 214 (434)
T ss_pred HHHHHHHhCcEEEccCCCcChhhhhhHHHhcccc--c-cChH-HhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHH
Confidence 999999999999995 999999999999999999 4 9999 99999 89999999999 99999
Q ss_pred HHHHHHHHHcCCCeEEEEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCC
Q 023127 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (287)
Q Consensus 140 ~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G 219 (287)
+.+++++..+|.. .+.+.++.++++ |++||.. .+++.++.+. +++|+|
T Consensus 215 ~~lA~~l~~lG~~---------------~g~~~~a~lt~~--------~~plG~~--------iGna~Ev~Ea-~~vL~G 262 (434)
T PRK06078 215 EELAHAMVRIGNN---------------VGRNTMAVISDM--------SQPLGRA--------IGNALEVLEA-IDTLQG 262 (434)
T ss_pred HHHHHHHHHHHHh---------------cCCeEEEEECCC--------Ccccccc--------CCCHHHHHHH-HHHHCC
Confidence 9999999999864 335566676664 7888863 4677887776 999999
Q ss_pred CC-chHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 220 ER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 220 ~~-~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+. .+++|.++.||+.+|++.|+++++++|+++|+++|+||+|+++|++|+++|++.
T Consensus 263 ~~~~~~~d~v~~~A~~~L~~~g~~~~~~eg~~~a~e~l~sGkAl~kf~~~v~aqGg~ 319 (434)
T PRK06078 263 KGPKDLTELVLTLGSQMVVLAGKAKTLEEAREHLIEVMNNGKALEKFKEFLSAQGGD 319 (434)
T ss_pred CCcccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccHHHHHHHHHHHHhCCC
Confidence 85 489999999999999999999999999999999999999999999999999985
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=100.00 E-value=5.8e-42 Score=323.67 Aligned_cols=234 Identities=25% Similarity=0.295 Sum_probs=201.5
Q ss_pred CccccccccCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcC-CCCCCCHHH
Q 023127 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALG-VVIDLDPEG 76 (287)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLG-i~~~~s~e~ 76 (287)
|++.+.+++.+ +.++|+|||||||.+ +||++|+++|++|+||+|||||++++++||+|+||+|| +++++++++
T Consensus 60 m~~~~~~l~~~~~~~~~vD~~gTGGdG~~---iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~ 136 (405)
T TIGR02644 60 MIDSGEVLDLSSLPGPKVDKHSTGGVGDK---VSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAE 136 (405)
T ss_pred HHHhCCcCCCcccCCCeeEEeCCCCCCCC---chHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHH
Confidence 45666666542 458999999999995 89999999999999999999999999999999999997 999999999
Q ss_pred HHHHHHhcCeEEEeCC-ccchhhhhhHHHHhhhCCCChhHhhhhccCCCC--------CCceEEee--------eChhhH
Q 023127 77 VRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--------VPFAVVGV--------YNENLV 139 (287)
Q Consensus 77 ~~~~l~~~g~~fl~~~-~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~--------~~~~v~Gv--------~h~~~~ 139 (287)
+.+++++.||+|++++ +++|++++++++|++++ |++|+ ||+||.- +.++|++| ++.+..
T Consensus 137 ~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a 212 (405)
T TIGR02644 137 FIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDA 212 (405)
T ss_pred HHHHHHHcCeEEecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHH
Confidence 9999999999999998 99999999999999999 99999 9999965 89999999 899999
Q ss_pred HHHHHHHHHcCCCeEE--EEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 023127 140 LKMANALQRFGLKRAL--VVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVL 217 (287)
Q Consensus 140 ~~~~~~~~~lg~~~~l--vv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL 217 (287)
..+++.+..+|....+ ++...++||+ +|... +++.+ +....++|
T Consensus 213 ~~LA~~~~~~g~~~g~~~~a~~t~md~p-------------------------lG~~i--------GnalE-v~Eai~~L 258 (405)
T TIGR02644 213 KELAKLMVEIGKGAGRKTSALLTDMNQP-------------------------LGRAI--------GNALE-VKEAVEFL 258 (405)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCcc-------------------------ccCCC--------CChhh-HHHHHHHH
Confidence 9999998888754332 2212334433 34321 22222 34458899
Q ss_pred CCCC-chHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 218 SGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 218 ~G~~-~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+|+. .++.|.++.||+.+|+..|++++.++|.++|+++|+||+|++||++|+++|++.
T Consensus 259 ~g~~p~dl~e~~~~la~~~L~~~g~a~~~~~g~~~a~~~l~sG~Al~kf~~~v~aQGG~ 317 (405)
T TIGR02644 259 KGEGPADLKELTLALAAEMLLLAGIAKTEKEARALAEDVLESGKALEKFRRFVEAQGGD 317 (405)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCC
Confidence 9984 688999999999999999999999999999999999999999999999999985
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=100.00 E-value=8.9e-41 Score=320.66 Aligned_cols=236 Identities=26% Similarity=0.333 Sum_probs=205.6
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHH
Q 023127 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (287)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~ 79 (287)
|++.+.+++.+ +.++|+||||||+.+++ |+.+++++|++|++|+|||||+++|++||+|+||+|| +++++++++++
T Consensus 140 M~~~g~~l~~~~~~~vDkhgTGGd~g~t~--S~~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaLg-~v~ls~e~~~~ 216 (490)
T PRK04350 140 MVETGERLDWDRPPVVDKHSIGGVPGNRT--TLIVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVLA-PVDLSVEEIKR 216 (490)
T ss_pred HHHhCCcccCCCCCeEEecCCCCCCCCCE--eHHHHHHHHhCCCceeeecCCCCCCCCchHHHHHHhh-cCCCCHHHHHH
Confidence 56677777543 56899999999988875 6678889999999999999999999999999999999 99999999999
Q ss_pred HHHhcCeEEEe--CCccchhhhhhHHHHhhhCCCChhHhhhhccC--------------CCCCCceEEeeeChhhHHHHH
Q 023127 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------------PACVPFAVVGVYNENLVLKMA 143 (287)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlN--------------P~~~~~~v~Gv~h~~~~~~~~ 143 (287)
++++.||||+| +++|||++++++++|+.++++|++|++++++| |+++..+ +++.+....++
T Consensus 217 ~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA 293 (490)
T PRK04350 217 VVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLA 293 (490)
T ss_pred HHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHH
Confidence 99999999999 89999999999999999999999999999999 9998887 89999999999
Q ss_pred HHHHHcCCCeEEEEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC---
Q 023127 144 NALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE--- 220 (287)
Q Consensus 144 ~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~--- 220 (287)
+.+..+|....+.+ | ..++++. .|-.+| -.+..+++...++|+|+
T Consensus 294 ~~~~~vg~~~g~~v------~---------a~lTd~~------qPlG~~-----------iGnalEv~e~l~vL~g~~~g 341 (490)
T PRK04350 294 RLFEEVGDRLGLRV------E---------CAITDGS------QPIGRG-----------IGPALEARDVLAVLENDPDA 341 (490)
T ss_pred HHHHHHHHhcCCeE------E---------EEECCCC------eehhcc-----------CCchHHHHHHHHHhCCCCCC
Confidence 99999886544444 1 2333332 122222 23577889999999994
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 221 RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 221 ~~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+.++.+.++.+|+.+|+..|.+ +.++|+++|++.|+||+|++||++|+++|++.
T Consensus 342 p~dl~e~~l~lA~~~L~~~g~~-~~~~g~~~a~~~L~sG~Al~kf~~ii~aQGG~ 395 (490)
T PRK04350 342 PNDLREKSLRLAGILLEMGGVA-PGGEGYALAREILESGKALEKFQEIIEAQGGD 395 (490)
T ss_pred CHhHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 3578899999999999999977 99999999999999999999999999999995
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=100.00 E-value=1.2e-33 Score=269.30 Aligned_cols=240 Identities=24% Similarity=0.284 Sum_probs=178.4
Q ss_pred CccccccccC-----CCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCH
Q 023127 1 MIKYATKVEG-----LGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (287)
Q Consensus 1 ~~~~~~~~~~-----~~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~ 74 (287)
|++.+.+++. ..+++|+|||||||+ |+||++|+++|++|++|+|||||++++++||+|+||+| |+++++|+
T Consensus 63 m~~sg~~i~~~~~d~~~~~vDkhgTGGdG~---niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~ 139 (440)
T PRK05820 63 MRDSGEVLDWSSLNLNGPIVDKHSTGGVGD---KISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSN 139 (440)
T ss_pred HHHhCCcCCCccccCCCCeEEEcCCCCCCc---cHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCH
Confidence 3455555532 245899999999998 78999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEeCC-ccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023127 75 EGVRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (287)
Q Consensus 75 e~~~~~l~~~g~~fl~~~-~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (287)
+++.+++++.||+|++++ +|||++++++++|++++ |+-.. ||+-. +|.+|++ ..|.+
T Consensus 140 e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~--tvds~--pli~a--------SImSKK~---------A~G~~- 197 (440)
T PRK05820 140 DRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTA--TVESI--PLITA--------SILSKKL---------AEGLD- 197 (440)
T ss_pred HHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccC--CCChH--HHHHH--------HHHHHHH---------HcCCC-
Confidence 999999999999999998 99999999999999987 55444 44333 3333333 15663
Q ss_pred EEEE--e-cCC-----ccccccCCceeEEEE--eCCeEEEEEEccC--CCCCCCCCCCCCCCCChHHHHHHHHHHHCCC-
Q 023127 154 ALVV--H-SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDPL--DYGIPRCTLESLQGGGPAYNAEVLRRVLSGE- 220 (287)
Q Consensus 154 ~lvv--~-GeG-----~dE~s~~~~t~v~~~--~~g~~~~~~~~p~--~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~- 220 (287)
++|+ + |.| .||..-...+.+ .+ .-|.-....++.- ++|- .......+....++|+|+
T Consensus 198 ~lvlDVk~G~gAfmkt~~~A~~La~~mv-~ig~~~g~~~~a~lTdm~qPlG~---------~iGnalEv~Eai~~L~g~~ 267 (440)
T PRK05820 198 ALVLDVKVGSGAFMKTYEEARELARSMV-EVANGAGVRTTALLTDMNQPLAS---------SAGNALEVREAVEFLTGGY 267 (440)
T ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHH-HHHHHcCCeEEEEEccCCCcccC---------ccchHHHHHHHHHHHCCCC
Confidence 4544 2 444 333322222111 10 0111112222211 1121 112334455578999998
Q ss_pred -CchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 221 -RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 221 -~~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+.++.+.++.-|+.+|+..|.+++.++|.+++++.|+||+|++||++|+++|+++
T Consensus 268 gp~dl~e~~~~la~~ml~~~g~~~~~~~g~~~~~~~l~sG~Al~kF~~~v~aQGGd 323 (440)
T PRK05820 268 RPPRLVEVTMALAAEMLVLAGLAKDEAEARADLAAVLDSGKAAERFGRMVAAQGGP 323 (440)
T ss_pred CChhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 3578888888899999999999999999999999999999999999999999995
No 16
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=100.00 E-value=2.4e-34 Score=272.95 Aligned_cols=240 Identities=26% Similarity=0.302 Sum_probs=178.9
Q ss_pred CccccccccCC-----CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCH
Q 023127 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (287)
Q Consensus 1 ~~~~~~~~~~~-----~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~ 74 (287)
|++.+.+++.+ +.++|+|||||||. |+||++|+++|++|++|+|||||+++|++||+|+||+| |+++.+|+
T Consensus 62 M~~sg~~i~~~~~~~~~~~vDkhgTGGdG~---niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEalpG~~v~ls~ 138 (437)
T TIGR02643 62 MRDSGDVLDWRSLDLNGPVVDKHSTGGVGD---VVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYDIFPDP 138 (437)
T ss_pred HHHhCCcccCcccccCCCeeEecCCCCCCc---chhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHhCCCCCCCCCH
Confidence 45556666432 45899999999999 68999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEe-CCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023127 75 EGVRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (287)
Q Consensus 75 e~~~~~l~~~g~~fl~-~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (287)
+++.+++++.||+|+. +++++|++++++++|+..+ |+-.+ ||+-. +|.+|++ ..|.+
T Consensus 139 e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lRDvt~--tVds~--pLi~a--------SImSKKl---------A~g~d- 196 (437)
T TIGR02643 139 ALFRRVVKDVGVAIIGQTADLAPADKRFYATRDVTA--TVESI--PLITA--------SILSKKL---------AAGLD- 196 (437)
T ss_pred HHHHHHHHHcCceEEccCCCcCcchhceeeeeeecC--CCCcH--HHHHH--------HHHHHHH---------HcCCC-
Confidence 9999999999999998 6999999999999998777 44444 44443 3444433 15654
Q ss_pred EEEE--e-cCC-----ccccccCCceeEEEE--eCCeEEEEEEcc--CCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC-
Q 023127 154 ALVV--H-SEG-----LDEMSPLGPGLILDV--TQEKIERFSFDP--LDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE- 220 (287)
Q Consensus 154 ~lvv--~-GeG-----~dE~s~~~~t~v~~~--~~g~~~~~~~~p--~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~- 220 (287)
.+|+ + |.| .+|..-...+.+ .+ .-|.-....++- +++|.. .++ ...+....++|+|+
T Consensus 197 ~ivlDVk~G~gAfmk~~~~A~~LA~~mv-~ig~~~g~~~~a~iTdm~qPlG~~--------iGn-alEv~Eai~~L~g~~ 266 (437)
T TIGR02643 197 ALVMDVKVGNGAFMPTYEESEELARSLV-DVANGAGVRTTALITDMNQPLASA--------AGN-AVEVRNAVDFLTGEK 266 (437)
T ss_pred eEEEEcCcCCCCcCCCHHHHHHHHHHHH-HHHHHcCCeEEEEECCCCCccccc--------cCc-HHHHHHHHHHHCCCC
Confidence 3444 2 454 222211111110 00 001111222221 122211 123 33455577899998
Q ss_pred -CchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 221 -RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 221 -~~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+.++.+.++.-|+.+|...|++.+.++|.+++++.|+||+|++||++|+++|+++
T Consensus 267 gp~dl~e~~~~la~~ml~~~g~~~~~~~~~~~~~~~l~sG~Al~kF~~~v~aQGGd 322 (437)
T TIGR02643 267 RNPRLEDVTMALAAEMLVSGGLAADEAEARAKLQAVLDSGRAAERFARMVAALGGP 322 (437)
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 4578899999999999999999999999999999999999999999999999995
No 17
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=100.00 E-value=7e-33 Score=266.07 Aligned_cols=235 Identities=25% Similarity=0.286 Sum_probs=180.3
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHH
Q 023127 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (287)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~ 79 (287)
|++.+.+++.. +.++|+||||||+.+++|++ +++++|++|++|+|||||+++|++||+|+||+|| ++++|++++++
T Consensus 145 M~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~--~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg-~v~ls~e~~~~ 221 (493)
T TIGR02645 145 MADTGEMLEWDREPIMDKHSIGGVPGNKTSLI--VVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT-RVALSAEEIKR 221 (493)
T ss_pred HHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc-CCCCCHHHHHH
Confidence 45566666543 46899999999999988774 7788899999999999999999999999999999 99999999999
Q ss_pred HHHhcCeEEEe--CCccchhhhhhHHHHhhhCCCChhHhhhhccCC---CCCCceEEee------eC------hhhHHHH
Q 023127 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGV------YN------ENLVLKM 142 (287)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP---~~~~~~v~Gv------~h------~~~~~~~ 142 (287)
++++.|+||+| +++|||+++.++++|+.+++.|.--++.-.+.- .++.+.|+-| |= +.+...|
T Consensus 222 ~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDvk~G~gAf~~~~~~A~~La~~~ 301 (493)
T TIGR02645 222 IVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDPRAQMLASIMSKKIAAGSTHVLIDIPVGPGAKVRSLQEAERLARLF 301 (493)
T ss_pred HHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCeEEEeccccCCCcCCCHHHHHHHHHHH
Confidence 99999999999 899999999999999999999987776655443 2344444433 11 1111122
Q ss_pred HHHHHHcCCCeEEEEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCC--
Q 023127 143 ANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-- 220 (287)
Q Consensus 143 ~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~-- 220 (287)
.++.+.+|. ...+.++++. +++|- .-.+...+....++|+|+
T Consensus 302 ~~vg~~~G~-------------------~~~a~iTdm~--------qPlG~---------~iGnalEv~Eal~~L~g~~~ 345 (493)
T TIGR02645 302 IELGDRLGV-------------------RVECAITYGS--------QPIGR---------GIGPALEAKEALAVLERSPA 345 (493)
T ss_pred HHHHHHcCC-------------------eEEEEECCCC--------Ccccc---------ccCcHHHHHHHHHHHCCCCC
Confidence 222222222 1112223332 12221 123455667788999997
Q ss_pred -CchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 221 -RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 221 -~~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+.++.+.++.-|+.+|...|++. ..+|.++|++.|+||+|++||++|+++|++.
T Consensus 346 ~p~dL~e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGG~ 400 (493)
T TIGR02645 346 APFSLREKSLLLAGILLEMGGAAP-RGAGKELARELLDSGKALEKMKEIIEAQGGD 400 (493)
T ss_pred CCccHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 35788999999999999999987 7999999999999999999999999999995
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=100.00 E-value=3e-31 Score=254.84 Aligned_cols=231 Identities=25% Similarity=0.307 Sum_probs=172.9
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHH
Q 023127 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (287)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~ 79 (287)
|++.+.+++.. +.++|+|||||||.++||++ +++++|+||++|+|||||+++|++||+|+||+|+ +++++++++.+
T Consensus 146 M~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~--~apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL~-~v~ls~e~~~~ 222 (500)
T TIGR03327 146 MAETGDMLSFDRHPIMDKHSIGGVPGNKISLL--VVPIVAAAGLTIPKTSSRAITSAAGTADVMEVLA-PVEFSADEIKR 222 (500)
T ss_pred HHHhCCcccCCCCCeEEEeCCCCCCCCCEEHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhh-CCCCCHHHHHH
Confidence 45566666543 46899999999999988874 6888899999999999999999999999999995 99999999999
Q ss_pred HHHhcCeEEEe--CCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE
Q 023127 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (287)
Q Consensus 80 ~l~~~g~~fl~--~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv 157 (287)
++++.|+||++ +++|||++++++.+|+.+.+.++--++.-.+ +|++ ..|.+ .+|+
T Consensus 223 ~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds~~li~aSIm-------------SKKl---------A~G~d-~lvl 279 (500)
T TIGR03327 223 IVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDPRGQMLASVM-------------AKKG---------AIGAD-HVVI 279 (500)
T ss_pred HHHHCCEEEEECCccccCHHHHHHHHhccccCCCcHHHHHHHHH-------------HHHH---------HcCCC-eEEE
Confidence 99999999999 8999999999999999776666554444332 2222 13443 2333
Q ss_pred e---cCC-----cccccc-----------CCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHC
Q 023127 158 H---SEG-----LDEMSP-----------LGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLS 218 (287)
Q Consensus 158 ~---GeG-----~dE~s~-----------~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~ 218 (287)
- |.| .+|..- .+....+.++++. +++|- .-.+...+....++|+
T Consensus 280 DVk~G~gAfm~~~~~A~~LA~~mv~vg~~~G~~~~a~iTdm~--------qPlG~---------~iGnaLEv~Eal~~L~ 342 (500)
T TIGR03327 280 DIPVGKGAKVKTVEEGRKLARDFIELGDRLGMNVECAITYGG--------QPIGR---------AIGPALEAKEALKVLE 342 (500)
T ss_pred EcCcCCCCcCCCHHHHHHHHHHHHHHHHHcCCeEEEEECCCC--------Ccccc---------ccCcHHHHHHHHHHhc
Confidence 1 333 111111 1111112223222 11221 1134455677889999
Q ss_pred C-C-CchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 219 G-E-RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 219 G-~-~~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
| + +.++.+.++.-|+.+|...|.+. .++|.++|++.|+||+|++||++|+++|++.
T Consensus 343 g~~~p~dL~e~~~~la~~~L~~~g~~~-~~~g~~~a~~~l~sG~Al~kf~~ii~aQGGd 400 (500)
T TIGR03327 343 DGEGPNSLIEKSLSLAGILLEMGGVAP-RGEGKNLALEILESGKALEKFKEIIAAQGGD 400 (500)
T ss_pred CCCCCccHHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHhCcHHHHHHHHHHHHcCCC
Confidence 9 4 45789999999999999999987 7999999999999999999999999999985
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=99.89 E-value=3.7e-22 Score=186.35 Aligned_cols=230 Identities=25% Similarity=0.309 Sum_probs=169.9
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCHHHHHHHHHhcCeEEEe
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMM 90 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~e~~~~~l~~~g~~fl~ 90 (287)
...+|+|+|||.|.++ |+.+++++|+||++|+|.++|++++..|+.|.||++ |+++..+.++..+++.+.|+..+.
T Consensus 77 ~~~vDKHStGGVgdk~---sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~DklEsi~g~~~~~~e~~fi~~~~~~g~aiiG 153 (435)
T COG0213 77 GPVVDKHSTGGVGDKT---SLILVPIVAAAGLPVPKMSGRGLGHTGGTLDKLESIPGVNLELDEIKFIEQVKDNGVAIIG 153 (435)
T ss_pred CceecccCCCCCCccc---chhHHHHHHhcCCcccccccCccccCccchhhhhccCCcccCcCHHHHHHHhhcCCeEEEe
Confidence 5789999999999775 999999999999999999999999999999999999 999999999999999999999999
Q ss_pred C-CccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE--e-cCC-----
Q 023127 91 S-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV--H-SEG----- 161 (287)
Q Consensus 91 ~-~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv--~-GeG----- 161 (287)
+ .++.|+.++|+.+|+.++ |+-.+ ||+-. +|.++++ ..|.+ ++|+ + |.|
T Consensus 154 qs~~LaPADkklyalrdvta--TVdsi--pLias--------SIMSKKl---------A~G~~-~ivlDVkvG~GAfmkt 211 (435)
T COG0213 154 QSGNLAPADKKLYALRDVTA--TVDSI--PLIAS--------SIMSKKL---------AAGAD-AIVLDVKVGSGAFMKT 211 (435)
T ss_pred CcCCcCcccceeEEeeeccc--cCCcH--HHHHH--------HHHHHHH---------hccCC-cEEEEecccCCCccCC
Confidence 9 599999999999999998 33222 33322 2333332 14543 3444 2 444
Q ss_pred ccccccCCceeEEEEeC--CeEEEEEEcc--CCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC-chHHHHHHHHHHHHH
Q 023127 162 LDEMSPLGPGLILDVTQ--EKIERFSFDP--LDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAAL 236 (287)
Q Consensus 162 ~dE~s~~~~t~v~~~~~--g~~~~~~~~p--~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~d~v~~naa~~L 236 (287)
.++..-.....+ ++.+ |......++- +.+|- ...+...++...++|+|+. .++.|.++.-|+.+|
T Consensus 212 ~~~a~~LA~~mv-~ig~~~g~~t~a~iTdm~QPLG~---------aiGnalEv~Eal~~L~g~~p~dL~e~~l~la~~mL 281 (435)
T COG0213 212 VEDARELAKAMV-EIGKGLGRKTTAVITDMNQPLGR---------AIGNALEVREALETLKGKGPPDLVELSLALAGEML 281 (435)
T ss_pred HHHHHHHHHHHH-HHHHhcCCeEEEEEcCCCCchhh---------hhccHHHHHHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 111111111000 1100 1111111211 11221 1123344556778899974 588899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhh
Q 023127 237 LVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKICL 276 (287)
Q Consensus 237 ~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~ 276 (287)
...|.+++.+||.+++++.|+||+|++||.+|++.|++..
T Consensus 282 ~~~g~a~~~~~a~~~~~~vl~sGkA~ekF~~~v~aQGGd~ 321 (435)
T COG0213 282 EMTGLAKTGEEAKAKAREVLESGKALEKFKEIVAAQGGDP 321 (435)
T ss_pred HHcCccCccHHHHHHHHHHHhCchHHHHHHHHHHHhCCCh
Confidence 9999999999999999999999999999999999999973
No 20
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=75.21 E-value=2.6 Score=32.36 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=41.5
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~ 71 (287)
++|+-||=++|.+-++=+.-+---|.+.|.|+....|.+..++....+.|+.+|++++
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 4688888888888655555556666778999999999887666677788888888764
No 21
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=67.23 E-value=57 Score=28.98 Aligned_cols=71 Identities=10% Similarity=0.057 Sum_probs=49.3
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC-----CCHHHHHHHHHhc
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEA 84 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~-----~s~e~~~~~l~~~ 84 (287)
++|+-||=++|.+.++-+.-+---+.+.|++++.-.|.+.-+.....+.|+.+|+++. .+..-+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~ 80 (249)
T TIGR01457 5 LIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDL 80 (249)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhc
Confidence 5789999888888766433333357788999988777665555567889999999865 2333445566664
No 22
>PRK10444 UMP phosphatase; Provisional
Probab=65.66 E-value=17 Score=32.56 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=51.8
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCC-----HHHHHHHHHhc
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLD-----PEGVRRCVDEA 84 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s-----~e~~~~~l~~~ 84 (287)
++|+-||=++|...++=+.-+--.+.+.|.+++.-.|++..+.....+-|+.+|+++..+ ..-+.+.|.+.
T Consensus 5 ~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 578888877777655544444456778999999999988767777888899999976532 34566667664
No 23
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=63.69 E-value=1.1e+02 Score=27.56 Aligned_cols=109 Identities=24% Similarity=0.379 Sum_probs=69.5
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC-CccchhhhhhHHHHhhhCCC---ChhHhhh--hccCCCCCCceEEeeeChhhHHHH
Q 023127 69 VIDLDPEGVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVK---TVFNILG--PMLNPACVPFAVVGVYNENLVLKM 142 (287)
Q Consensus 69 ~~~~s~e~~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~Lg~R---t~~ntl~--~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (287)
-++.+-|++.+...+.|+--+.. +++...-+|+...=+++++. .++|+=| |++.| +.....
T Consensus 47 vVATDde~I~~av~~~G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p-------------~~I~~~ 113 (247)
T COG1212 47 VVATDDERIAEAVQAFGGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEP-------------EVIRAV 113 (247)
T ss_pred EEEcCCHHHHHHHHHhCCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCH-------------HHHHHH
Confidence 46688899999999997776666 66666799999999999887 6667665 77776 566777
Q ss_pred HHHHHHcCCCeE-EEEecCCccccccCCceeEEEE--eCCeEEEEEEccCCCC
Q 023127 143 ANALQRFGLKRA-LVVHSEGLDEMSPLGPGLILDV--TQEKIERFSFDPLDYG 192 (287)
Q Consensus 143 ~~~~~~lg~~~~-lvv~GeG~dE~s~~~~t~v~~~--~~g~~~~~~~~p~~~g 192 (287)
++.++.-..+=+ ++++=...+|. ..++.|..+ .+|..-.|+-.|-.|+
T Consensus 114 ~~~L~~~~~~~aTl~~~i~~~ee~--~nPN~VKvV~d~~g~ALYFSRs~iP~~ 164 (247)
T COG1212 114 AENLENSNADMATLAVKITDEEEA--FNPNVVKVVLDKEGYALYFSRAPIPYG 164 (247)
T ss_pred HHHHHhCCcceeeeeeecCCHHHh--cCCCcEEEEEcCCCcEEEEEcCCCCCc
Confidence 777775544323 33332333333 223333333 3345555555555555
No 24
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=61.60 E-value=80 Score=30.75 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=74.5
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHH----HHcCCCC--CCCHHHHHHHHH---
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVD--- 82 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvL----eaLGi~~--~~s~e~~~~~l~--- 82 (287)
..++=++|++|.|+.|.=..+++.+.+...|.+|..-..+ +.+.|+.+-| +.+|+++ ..++++..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D--~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD--TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC--ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 3466789999999964222222222112456778765433 3455654444 3467765 356666666655
Q ss_pred hcCeEEEeCCccchhhhh-hHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 83 EAGIGFMMSTKYHPAMKF-VRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 83 ~~g~~fl~~~~~~P~l~~-l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
...+.++..+-+.|.... +..+++-+. ...+|......+-....+.-+..+.+.+..++..++++-+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~---------~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TK 366 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIE---------FSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTK 366 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHh---------ccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEec
Confidence 456888888877665332 233443322 1123432223333335555666667777788876555544
No 25
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.45 E-value=1e+02 Score=30.26 Aligned_cols=131 Identities=10% Similarity=0.137 Sum_probs=74.6
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHH----HcCCCCC--CCHHHHHHHHHh---
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE----ALGVVID--LDPEGVRRCVDE--- 83 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLe----aLGi~~~--~s~e~~~~~l~~--- 83 (287)
..|=++|.+|.|+.|+= ...|..+...|.+|..--.+ +.+.++.+-|. .+|+++. .+++++.+.++.
T Consensus 242 ~vI~LVGptGvGKTTTi--aKLA~~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL--AKMAWQFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHH--HHHHHHHHHcCCcEEEEecC--CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 46779999999996411 11222345668888765443 45556544443 4688764 677777777743
Q ss_pred ---cCeEEEeCCccchh-hhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEee-eChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 84 ---AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 84 ---~g~~fl~~~~~~P~-l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
..+.|+..+--++. ...+..+++.+... .|. ..+.+++. ....-.....+.+..++.++.++-|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~----------~Pd-evlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQV----------EPD-YICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhc----------CCC-eEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 36788888655443 22344555444321 232 12444443 2333445566777778887766665
No 26
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=59.41 E-value=84 Score=31.04 Aligned_cols=131 Identities=22% Similarity=0.342 Sum_probs=84.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-Cc
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-TK 93 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~-~~ 93 (287)
+-+.|.||-|- ...|.+|...|++|- |++.-.+. ..+.|+++|+.+-...+ .+...+..=+.+=.+ +.
T Consensus 10 iHfIGIgG~GM------sglA~iL~~~G~~Vs--GSD~~~~~--~t~~L~~~G~~i~~gh~-~~ni~~~~~VV~s~Ai~~ 78 (459)
T COG0773 10 IHFIGIGGIGM------SGLAEILLNLGYKVS--GSDLAESP--MTQRLEALGIEIFIGHD-AENILDADVVVVSNAIKE 78 (459)
T ss_pred EEEEeeccccH------HHHHHHHHhCCCceE--CccccccH--HHHHHHHCCCeEeCCCC-HHHcCCCceEEEecccCC
Confidence 55667777664 357889999999998 77765444 88999999998764332 222222222332222 56
Q ss_pred cchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhH-HHHHHHHHHcCCCeEEEEec
Q 023127 94 YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLV-LKMANALQRFGLKRALVVHS 159 (287)
Q Consensus 94 ~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~-~~~~~~~~~lg~~~~lvv~G 159 (287)
=+|.+ ....++.+.+-+=--.|+-|+.. +...-|.|-=-|... .+++.+++..|.+-..++-|
T Consensus 79 ~NpEi--~~A~e~~ipi~~r~e~Laelm~~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG 142 (459)
T COG0773 79 DNPEI--VAALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGG 142 (459)
T ss_pred CCHHH--HHHHHcCCCeEcHHHHHHHHHhC-CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECc
Confidence 66776 34444455555666788888888 555566666555544 45577888888887777754
No 27
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=59.28 E-value=6.6 Score=36.44 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=34.1
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHH
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLea 65 (287)
+=+.|-||.|+.| ++.+.|+-+|+.|.+|+.-.-+ +.....|+|..
T Consensus 4 ~~~~GKGGVGKTT--~aaA~A~~~A~~G~rtLlvS~D---pa~~L~d~l~~ 49 (305)
T PF02374_consen 4 LFFGGKGGVGKTT--VAAALALALARRGKRTLLVSTD---PAHSLSDVLGQ 49 (305)
T ss_dssp EEEEESTTSSHHH--HHHHHHHHHHHTTS-EEEEESS---TTTHHHHHHTS
T ss_pred EEEecCCCCCcHH--HHHHHHHHHhhCCCCeeEeecC---CCccHHHHhCC
Confidence 3368999999998 7888999999999999988554 33345566543
No 28
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.52 E-value=11 Score=34.10 Aligned_cols=78 Identities=31% Similarity=0.309 Sum_probs=48.7
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcC------CHHHHHHHc---------CCCCCCCHHHHHHHHH
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSAC------GSADVLEAL---------GVVIDLDPEGVRRCVD 82 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~------Gs~dvLeaL---------Gi~~~~s~e~~~~~l~ 82 (287)
+-.|.+|..| -.+..++.+.+|++|+-.|+-+=-++. =|+|+.|-- |+.--++.+..-+.|+
T Consensus 102 vA~~~~gaTT---VAaTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LE 178 (310)
T COG2313 102 VAEGKNGATT---VAATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSILDIGLTLEVLE 178 (310)
T ss_pred HhcCcCCcch---HHHHHHHHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhhhccHHHHHHHH
Confidence 4567777765 223345566679999999986633332 167766642 4444466777888888
Q ss_pred hcCeEEEeC-Cccchhh
Q 023127 83 EAGIGFMMS-TKYHPAM 98 (287)
Q Consensus 83 ~~g~~fl~~-~~~~P~l 98 (287)
..|+-.+.. ..-.|++
T Consensus 179 T~gVPvvg~~t~~fPaF 195 (310)
T COG2313 179 TQGVPVVGYQTNEFPAF 195 (310)
T ss_pred hcCcceeecCCCcccch
Confidence 888876644 3334443
No 29
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=54.96 E-value=49 Score=28.11 Aligned_cols=88 Identities=22% Similarity=0.183 Sum_probs=59.8
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC-----CCCcCC--HHHHHHHcCC-CCCCCHHHHHHHHHhc----
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS-----SSSACG--SADVLEALGV-VIDLDPEGVRRCVDEA---- 84 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~-----~~~~~G--s~dvLeaLGi-~~~~s~e~~~~~l~~~---- 84 (287)
+.|++|.|+ ||.+..+.+..|++=+-.|.-- ..+..| ...++++=++ +=....+-+...+++.
T Consensus 5 ilG~pGaGK-----~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~ 79 (178)
T COG0563 5 ILGPPGAGK-----STLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKA 79 (178)
T ss_pred EECCCCCCH-----HHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccC
Confidence 679999999 7899999999888877655422 122334 3445555552 3234446677777775
Q ss_pred CeEEEeCCccchhhhhhHHHHhhhC
Q 023127 85 GIGFMMSTKYHPAMKFVRPVRKKLK 109 (287)
Q Consensus 85 g~~fl~~~~~~P~l~~l~~lR~~Lg 109 (287)
+|-|...|.+.+....+-..-+++|
T Consensus 80 ~~I~dg~PR~~~qa~~l~r~l~~~g 104 (178)
T COG0563 80 GFILDGFPRTLCQARALKRLLKELG 104 (178)
T ss_pred eEEEeCCCCcHHHHHHHHHHHHHcC
Confidence 6777788999888877777666655
No 30
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.94 E-value=1.5e+02 Score=28.58 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=70.9
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHh-------CCCcEEeecCCCCCCcCCHHHHHHH----cCCCCC--CCHHHHH
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAA-------CGAKVAKQGSRSSSSACGSADVLEA----LGVVID--LDPEGVR 78 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~-------~G~~V~kHG~~~~~~~~Gs~dvLea----LGi~~~--~s~e~~~ 78 (287)
+.++=++|..|.|+. |.++.+++. .|.+|..-..+ +.+.++.+-|.. +|+++. .++++..
T Consensus 174 ~~vi~lvGptGvGKT-----TT~aKLA~~~~~~~~~~g~~V~lit~D--t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKT-----TTIAKLAAIYGINSDDKSLNIKIITID--NYRIGAKKQIQTYGDIMGIPVKAIESFKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHH-----HHHHHHHHHHHhhhccCCCeEEEEecc--CccHHHHHHHHHHhhcCCcceEeeCcHHHHH
Confidence 345668999999985 344444432 47788765544 345565444444 688765 4556655
Q ss_pred HHH---HhcCeEEEeCCccchhh-hhhHHHHhhhCCCChhHhhhhccCCCCCCceEEee-eChhhHHHHHHHHHHcCCCe
Q 023127 79 RCV---DEAGIGFMMSTKYHPAM-KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKR 153 (287)
Q Consensus 79 ~~l---~~~g~~fl~~~~~~P~l-~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~lg~~~ 153 (287)
+.+ ....+.++..+-.+|.. ..+..+++.+. .+. .|. -.+.|+.. ....-.......+..+|.++
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~------~~~---~~~-e~~LVlsat~~~~~~~~~~~~~~~~~~~~ 316 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSPKDFMKLAEMKELLN------ACG---RDA-EFHLAVSSTTKTSDVKEIFHQFSPFSYKT 316 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCccCHHHHHHHHHHHH------hcC---CCC-eEEEEEcCCCCHHHHHHHHHHhcCCCCCE
Confidence 544 45678888887777632 12334443322 111 121 23444444 33334444445555577777
Q ss_pred EEEEe
Q 023127 154 ALVVH 158 (287)
Q Consensus 154 ~lvv~ 158 (287)
.++-|
T Consensus 317 ~I~TK 321 (388)
T PRK12723 317 VIFTK 321 (388)
T ss_pred EEEEe
Confidence 66665
No 31
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.56 E-value=2.1e+02 Score=30.22 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHH----hCC-CcEEeecCCCCCCcCCHHHHHH----HcCCCCC--CCHHHHHHH
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAA----ACG-AKVAKQGSRSSSSACGSADVLE----ALGVVID--LDPEGVRRC 80 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA----~~G-~~V~kHG~~~~~~~~Gs~dvLe----aLGi~~~--~s~e~~~~~ 80 (287)
+.++=++|..|.|+. |+++.+++ ..| .+|.+-..+ +.+.|+.+-|+ .+|+++. .+++++.+.
T Consensus 185 g~Vi~lVGpnGvGKT-----TTiaKLA~~~~~~~G~kkV~lit~D--t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~a 257 (767)
T PRK14723 185 GGVLALVGPTGVGKT-----TTTAKLAARCVAREGADQLALLTTD--SFRIGALEQLRIYGRILGVPVHAVKDAADLRFA 257 (767)
T ss_pred CeEEEEECCCCCcHH-----HHHHHHHhhHHHHcCCCeEEEecCc--ccchHHHHHHHHHHHhCCCCccccCCHHHHHHH
Confidence 457789999999995 44444443 334 466654433 46777666554 5677664 577777666
Q ss_pred HH---hcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEee-eChhhHHHHHHHHHHc---CCCe
Q 023127 81 VD---EAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRF---GLKR 153 (287)
Q Consensus 81 l~---~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~l---g~~~ 153 (287)
++ ...+.++..+-.+|....++..-..+. ...+|.. .+.|+.. ++.+-+..+.+.++.. +.+.
T Consensus 258 l~~~~~~D~VLIDTAGRs~~d~~l~eel~~l~---------~~~~p~e-~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~g 327 (767)
T PRK14723 258 LAALGDKHLVLIDTVGMSQRDRNVSEQIAMLC---------GVGRPVR-RLLLLNAASHGDTLNEVVHAYRHGAGEDVDG 327 (767)
T ss_pred HHHhcCCCEEEEeCCCCCccCHHHHHHHHHHh---------ccCCCCe-EEEEECCCCcHHHHHHHHHHHhhcccCCCCE
Confidence 65 457889999887776655554443322 1233432 2333333 3444444455556543 5666
Q ss_pred EEEEe
Q 023127 154 ALVVH 158 (287)
Q Consensus 154 ~lvv~ 158 (287)
.|+-|
T Consensus 328 lIlTK 332 (767)
T PRK14723 328 CIITK 332 (767)
T ss_pred EEEec
Confidence 56555
No 32
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=53.66 E-value=13 Score=29.59 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=58.4
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeC--CccchhhhhhHHHHhhhC--CCChhHhhhhccCCCCCCceEEeeeChhhHHHH
Q 023127 67 GVVIDLDPEGVRRCVDEAGIGFMMS--TKYHPAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (287)
Q Consensus 67 Gi~~~~s~e~~~~~l~~~g~~fl~~--~~~~P~l~~l~~lR~~Lg--~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (287)
|++-+.|-..+.+.|+++|+.|-.- -.=-|.-..|..+=+++| +++++|+-+....=++ ...-.....+....+
T Consensus 7 ~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~--~~~~~~~~~~~~~~i 84 (117)
T COG1393 7 GNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELN--LDKEDLSDEELIEAL 84 (117)
T ss_pred eCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcC--CcccccChHHHHHHH
Confidence 6677788899999999999998544 333677778999988998 8999999777665554 222234444444444
Q ss_pred HHHHHHcCCCeEEEEe
Q 023127 143 ANALQRFGLKRALVVH 158 (287)
Q Consensus 143 ~~~~~~lg~~~~lvv~ 158 (287)
.+--..+ +|-++|.
T Consensus 85 ~~~~~Li--kRPivv~ 98 (117)
T COG1393 85 LENPSLI--KRPIVVD 98 (117)
T ss_pred HhChhhc--cCCeEEe
Confidence 4333233 3445554
No 33
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=52.55 E-value=36 Score=30.47 Aligned_cols=73 Identities=21% Similarity=0.134 Sum_probs=49.1
Q ss_pred cceeeCCCCCCCC----CccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC-----CCHHHHHHHHHhc
Q 023127 14 AVDIVGTGGDGAN----TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEA 84 (287)
Q Consensus 14 ~~D~~gtggdG~~----t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~-----~s~e~~~~~l~~~ 84 (287)
++|+-||=+++.. -++=+.-+---+.+.|++++.-.|++..+.....+.|+.+|+++. .|...+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~ 84 (257)
T TIGR01458 5 LLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEK 84 (257)
T ss_pred EEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhc
Confidence 4677777555443 344333344456778999999999887777788899999999864 1223456667766
Q ss_pred Ce
Q 023127 85 GI 86 (287)
Q Consensus 85 g~ 86 (287)
++
T Consensus 85 ~~ 86 (257)
T TIGR01458 85 QL 86 (257)
T ss_pred CC
Confidence 54
No 34
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=51.98 E-value=49 Score=28.50 Aligned_cols=131 Identities=22% Similarity=0.338 Sum_probs=72.4
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHH----HHcCCCCC-----CCHHH-HHHHHH-
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVID-----LDPEG-VRRCVD- 82 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvL----eaLGi~~~-----~s~e~-~~~~l~- 82 (287)
++=++|..|.|+.| -+.=+++..... |.+|..... .+.|.|..|-| +.+|+++. .++.+ +.+.++
T Consensus 3 vi~lvGptGvGKTT-t~aKLAa~~~~~-~~~v~lis~--D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 3 VIALVGPTGVGKTT-TIAKLAARLKLK-GKKVALISA--DTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHT-T--EEEEEE--STSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCchHh-HHHHHHHHHhhc-cccceeecC--CCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 45578999999953 122223333333 888888774 34778866555 55688752 23433 334444
Q ss_pred --h--cCeEEEeCCccchhhhhh-HHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE
Q 023127 83 --E--AGIGFMMSTKYHPAMKFV-RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (287)
Q Consensus 83 --~--~g~~fl~~~~~~P~l~~l-~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv 157 (287)
+ ..+.++..+-.+|....+ -.+++- .+ .++|...-..+-.-.+.+-.+...+..+.++.+..++-
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~------~~----~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlT 148 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPRDEELLEELKKL------LE----ALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILT 148 (196)
T ss_dssp HHHTTSSEEEEEE-SSSSTHHHHHHHHHHH------HH----HHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEE
T ss_pred HhhcCCCEEEEecCCcchhhHHHHHHHHHH------hh----hcCCccceEEEecccChHHHHHHHHHhhcccCceEEEE
Confidence 3 458999998887765443 333331 11 22444333333344555666666666677888766666
Q ss_pred e
Q 023127 158 H 158 (287)
Q Consensus 158 ~ 158 (287)
|
T Consensus 149 K 149 (196)
T PF00448_consen 149 K 149 (196)
T ss_dssp S
T ss_pred e
Confidence 5
No 35
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=50.84 E-value=86 Score=28.83 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=48.7
Q ss_pred HHhCC-CcEEeecCCCCCCcCCHHHHHHH----c--CCCCCCCHHHHHHHHHhcCeEEEeCC--ccchh------hhhhH
Q 023127 38 AAACG-AKVAKQGSRSSSSACGSADVLEA----L--GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPA------MKFVR 102 (287)
Q Consensus 38 lA~~G-~~V~kHG~~~~~~~~Gs~dvLea----L--Gi~~~~s~e~~~~~l~~~g~~fl~~~--~~~P~------l~~l~ 102 (287)
+...| +++..|.+...++ ....+.++. + |+.+..+++..+ .+.+.|+.+-.-| ++.=. -+-+.
T Consensus 162 ar~~g~l~~t~HaGE~~~~-~~v~~~~~~~~~RIgHg~~~~~~p~~~~-~l~~~~i~ie~CP~SN~~~~~~~~~~~hP~~ 239 (305)
T cd00443 162 ARRLGLLGLTLHCGETGNR-EELLQALLLLPDRIGHGIFLLKHPELIY-LVKLRNIPIEVCPTSNVVLGTVQSYEKHPFM 239 (305)
T ss_pred HHHcCCcceEEeecCCCCh-HHHHHHHHhccceeeceEecCCCHHHHH-HHHHcCCEEEECcchhhhhcCCCChhhChHH
Confidence 34569 9999999976222 112333332 2 345555556554 4555555554443 33100 01122
Q ss_pred HHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC
Q 023127 103 PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (287)
Q Consensus 103 ~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg 150 (287)
.++ +.|++-.+||=.| ++|+..+.+-|..+....|
T Consensus 240 ~~~-~~G~~v~i~TDd~------------~~~~~~l~~E~~~~~~~~~ 274 (305)
T cd00443 240 RFF-KAGLPVSLSTDDP------------GIFGTSLSEEYSLAAKTFG 274 (305)
T ss_pred HHH-HCCCeEEEeCCCC------------cccCCChHHHHHHHHHHcC
Confidence 222 2376666666444 3444455555665555544
No 36
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.82 E-value=1.6e+02 Score=28.97 Aligned_cols=132 Identities=14% Similarity=0.217 Sum_probs=71.8
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHH----HhCCCcEEeecCCCCCCcCCHHHHH----HHcCCCCCC--CHHHHHHHHH
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILA----AACGAKVAKQGSRSSSSACGSADVL----EALGVVIDL--DPEGVRRCVD 82 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~ll----A~~G~~V~kHG~~~~~~~~Gs~dvL----eaLGi~~~~--s~e~~~~~l~ 82 (287)
.++=++|.+|.|+.| +++.++ ...|.+|..-..+. .+.++.+.| +.+|+++.. +..++.+.++
T Consensus 224 ~vi~lvGptGvGKTT-----taaKLA~~~~~~~G~~V~Lit~Dt--~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~ 296 (432)
T PRK12724 224 KVVFFVGPTGSGKTT-----SIAKLAAKYFLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA 296 (432)
T ss_pred eEEEEECCCCCCHHH-----HHHHHHHHHHHhcCCeEEEecccc--hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH
Confidence 456689999999953 333333 34578887766543 444544433 566887642 2455666665
Q ss_pred hc--CeEEEeCCccchh-hhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 83 EA--GIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 83 ~~--g~~fl~~~~~~P~-l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
+. .+.++..+-+.|. ...+-.+++.+. .+++ .+|...-..+-+.+++.-.....+.++.+|+++.++-|
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~------~~~~-~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTK 368 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYS------CFGE-KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTK 368 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHH------hhcC-CCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEc
Confidence 43 5566676666543 233333333221 1111 01211122233345555667777788889997766665
No 37
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=46.39 E-value=1.1e+02 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=15.2
Q ss_pred HHHHHHHhCCCcEEeec
Q 023127 33 GASILAAACGAKVAKQG 49 (287)
Q Consensus 33 ~aa~llA~~G~~V~kHG 49 (287)
-+|..+++.|.++..+|
T Consensus 41 n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 41 NVAVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHHHCCCcEEEEE
Confidence 46888999999999999
No 38
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=44.81 E-value=49 Score=30.35 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=45.4
Q ss_pred HHHHHhcCeEEEeCCcc------chhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC
Q 023127 78 RRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (287)
Q Consensus 78 ~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~ 151 (287)
.+.|.+.+..|+....- .-.+.....+++++|++++.|+..+=.|. -.+. -...-+..+|.
T Consensus 22 ~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~------------~~l~-~~L~~~~~~Gi 88 (281)
T TIGR00677 22 MDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPI------------EMID-DALERAYSNGI 88 (281)
T ss_pred HHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCH------------HHHH-HHHHHHHHCCC
Confidence 34556677777766442 22566677888899999988885443332 1233 23334478899
Q ss_pred CeEEEEecC
Q 023127 152 KRALVVHSE 160 (287)
Q Consensus 152 ~~~lvv~Ge 160 (287)
+++++++||
T Consensus 89 ~niLal~GD 97 (281)
T TIGR00677 89 QNILALRGD 97 (281)
T ss_pred CEEEEECCC
Confidence 999999984
No 39
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=44.42 E-value=17 Score=31.34 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=25.8
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kH 48 (287)
|=+.|-||.|+.| ++.-.|-.+|+.|.+|+.-
T Consensus 3 iav~gKGGvGKTt--~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 3 IAIYGKGGIGKST--TSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEECCCcCcHHH--HHHHHHHHHHHCCCcEEEE
Confidence 4467999999986 5666788888999999864
No 40
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=43.21 E-value=49 Score=30.05 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=43.1
Q ss_pred HHHHHHhcCeEEEeCCcc------chhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC
Q 023127 77 VRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (287)
Q Consensus 77 ~~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg 150 (287)
..+.|.+.+.-|+....- ...+.-...+++++|++++.|+..+=. ++.-.+-....+..+|
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~-------------n~~~l~~~L~~~~~~G 86 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGA-------------TREEIREILREYRELG 86 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCC-------------CHHHHHHHHHHHHHCC
Confidence 344566666666655332 223444466777888888888744322 2333344444557889
Q ss_pred CCeEEEEecC
Q 023127 151 LKRALVVHSE 160 (287)
Q Consensus 151 ~~~~lvv~Ge 160 (287)
.+++++++||
T Consensus 87 i~nvL~l~GD 96 (272)
T TIGR00676 87 IRHILALRGD 96 (272)
T ss_pred CCEEEEeCCC
Confidence 9999999983
No 41
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=42.55 E-value=1.2e+02 Score=23.22 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=33.5
Q ss_pred HHHHHHHHHcCCCeEEEE-ecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCC
Q 023127 140 LKMANALQRFGLKRALVV-HSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIP 194 (287)
Q Consensus 140 ~~~~~~~~~lg~~~~lvv-~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~ 194 (287)
+-++..++..|+. +.+. +|+|.| -++.+.+..+.++...+|.+ .|||+.
T Consensus 20 qALa~~Le~rG~~-AsCYtC~dG~~---~~~ASFmv~lg~~HliRFLV--Sd~GIs 69 (105)
T PF08844_consen 20 QALAIVLERRGYL-ASCYTCGDGRD---MNSASFMVSLGDNHLIRFLV--SDYGIS 69 (105)
T ss_pred HHHHHHHHhCCce-eEEEecCCCCC---CCceeEEEEcCCCcEEEEEE--ecCCee
Confidence 3456778888984 5555 457754 45667777888887777765 578875
No 42
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=41.78 E-value=41 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=24.0
Q ss_pred eChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023127 134 YNENLVLKMANALQRFGLKRALVVHS-EGLD 163 (287)
Q Consensus 134 ~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (287)
.++++.+.+.+.++..|...+.|++| +|.-
T Consensus 17 ~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G 47 (101)
T PF02641_consen 17 GGKPLYEWLLERAREAGIAGATVFRGIEGFG 47 (101)
T ss_dssp TTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE
T ss_pred CceEHHHHHHHHHHHCCCCeEEEEcceeeeC
Confidence 46788888999999999999999999 8854
No 43
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=40.40 E-value=3.3e+02 Score=26.56 Aligned_cols=130 Identities=18% Similarity=0.236 Sum_probs=71.3
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhC----C-CcEEeecCCCCCCcCCHHHHH----HHcCCCCC--CCHHHHHHH
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAAC----G-AKVAKQGSRSSSSACGSADVL----EALGVVID--LDPEGVRRC 80 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~----G-~~V~kHG~~~~~~~~Gs~dvL----eaLGi~~~--~s~e~~~~~ 80 (287)
+.++-++|..|.|+ ||+.+.+++.+ | .+|... ...+.+.|..+-+ +.+|+++. .++.+....
T Consensus 191 g~vi~lvGpnG~GK-----TTtlakLA~~~~~~~~~~~v~~i--~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~a 263 (420)
T PRK14721 191 GGVYALIGPTGVGK-----TTTTAKLAARAVIRHGADKVALL--TTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLM 263 (420)
T ss_pred CcEEEEECCCCCCH-----HHHHHHHHHHHHHhcCCCeEEEE--ecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHH
Confidence 56788999999999 55666665542 2 333221 1223455644433 45688765 455555444
Q ss_pred H---HhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEee-eChhhHHHHHHHHHHcCCCeEEE
Q 023127 81 V---DEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKRALV 156 (287)
Q Consensus 81 l---~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv-~h~~~~~~~~~~~~~lg~~~~lv 156 (287)
+ +.....++..+-+.+....++.--+.|. ....|.. .+.|+.. ++..-+.-....++.++.+..++
T Consensus 264 l~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~---------~~~~~~~-~~LVl~at~~~~~~~~~~~~f~~~~~~~~I~ 333 (420)
T PRK14721 264 LHELRGKHMVLIDTVGMSQRDQMLAEQIAMLS---------QCGTQVK-HLLLLNATSSGDTLDEVISAYQGHGIHGCII 333 (420)
T ss_pred HHHhcCCCEEEecCCCCCcchHHHHHHHHHHh---------ccCCCce-EEEEEcCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 4 4456788887665554433322212221 1112322 2333433 35666666677777888877666
Q ss_pred Ee
Q 023127 157 VH 158 (287)
Q Consensus 157 v~ 158 (287)
-|
T Consensus 334 TK 335 (420)
T PRK14721 334 TK 335 (420)
T ss_pred Ee
Confidence 65
No 44
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=40.22 E-value=50 Score=31.34 Aligned_cols=97 Identities=16% Similarity=0.013 Sum_probs=52.1
Q ss_pred HhCCCcEEeecCCCCCCc--CCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCC--hh
Q 023127 39 AACGAKVAKQGSRSSSSA--CGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKT--VF 114 (287)
Q Consensus 39 A~~G~~V~kHG~~~~~~~--~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt--~~ 114 (287)
+..+.+|...|......+ ....|+|+++|+.+...-.... +. +. +. ..+.+. .+-+.. .-
T Consensus 94 ~~~~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~~~~--~~---~~-~~-~~~~~~---------~i~~~~~~s~ 157 (408)
T cd01554 94 AGADFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEERDL--PP---LL-KG-GKNLGP---------IHYEDPIASA 157 (408)
T ss_pred HcCCCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCCCCc--CC---EE-Ee-cCCCCC---------eEEeCCcccH
Confidence 334568888999887765 4479999999998753211100 00 00 00 000000 000001 01
Q ss_pred Hhhhh--ccCCC-CCCceEEeeeChhhHHHHHHHHHHcCC
Q 023127 115 NILGP--MLNPA-CVPFAVVGVYNENLVLKMANALQRFGL 151 (287)
Q Consensus 115 ntl~~--LlNP~-~~~~~v~Gv~h~~~~~~~~~~~~~lg~ 151 (287)
+.+-. +..|. .....+.++.+.++.....++++++|.
T Consensus 158 q~~~~ll~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~G~ 197 (408)
T cd01554 158 QVKSALMFAALLAKGETVIIEAAKEPTINHTENMLQTFGG 197 (408)
T ss_pred HHHHHHHHHHhcCCCceEEEEeCCCCCHHHHHHHHHHCCC
Confidence 11111 12232 245677888888899999999999997
No 45
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=40.14 E-value=76 Score=29.38 Aligned_cols=76 Identities=14% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHH--HhcCeEEEeCCccchh--hhhhHHHHhhhC
Q 023127 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV--DEAGIGFMMSTKYHPA--MKFVRPVRKKLK 109 (287)
Q Consensus 34 aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l--~~~g~~fl~~~~~~P~--l~~l~~lR~~Lg 109 (287)
.+--.++.|+.|+++|..+++-..|+.--+..=|+.+-.+++++++.- .+..++|+.+-.++.. ..-+..+|..+.
T Consensus 106 ~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p 185 (294)
T COG0761 106 EVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFP 185 (294)
T ss_pred HHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCc
Confidence 345568899999999999998765532211111566667888888874 3448999999777654 233344454443
No 46
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=39.46 E-value=27 Score=28.85 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=24.7
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
.+-||.|+.| ++...|..+|+.|.+|+.--.
T Consensus 6 s~kgG~GKTt--~a~~LA~~la~~g~~vllvD~ 36 (169)
T cd02037 6 SGKGGVGKST--VAVNLALALAKLGYKVGLLDA 36 (169)
T ss_pred cCCCcCChhH--HHHHHHHHHHHcCCcEEEEeC
Confidence 4568999987 677788889999999987543
No 47
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=39.35 E-value=1.3e+02 Score=24.90 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEee-----eChhhHHHHHHHHHH
Q 023127 74 PEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-----YNENLVLKMANALQR 148 (287)
Q Consensus 74 ~e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv-----~h~~~~~~~~~~~~~ 148 (287)
..-+.+.|...||-.++.+.+.+.-..+... ......++|+ .|..+.+.+.++++.
T Consensus 29 akvia~~l~d~GfeVi~~g~~~tp~e~v~aA-------------------~~~dv~vIgvSsl~g~h~~l~~~lve~lre 89 (143)
T COG2185 29 AKVIARALADAGFEVINLGLFQTPEEAVRAA-------------------VEEDVDVIGVSSLDGGHLTLVPGLVEALRE 89 (143)
T ss_pred hHHHHHHHHhCCceEEecCCcCCHHHHHHHH-------------------HhcCCCEEEEEeccchHHHHHHHHHHHHHH
Confidence 4557778888888888888877775444333 1123344555 588999999999999
Q ss_pred cCCCeEEEEe
Q 023127 149 FGLKRALVVH 158 (287)
Q Consensus 149 lg~~~~lvv~ 158 (287)
.|.+..+++-
T Consensus 90 ~G~~~i~v~~ 99 (143)
T COG2185 90 AGVEDILVVV 99 (143)
T ss_pred hCCcceEEee
Confidence 9998888554
No 48
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.22 E-value=3.6e+02 Score=25.91 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=57.0
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHh----CC-CcEEeecCCCCCCcCCHHHHHH----HcCCCCC--CC---HHHH
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAA----CG-AKVAKQGSRSSSSACGSADVLE----ALGVVID--LD---PEGV 77 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~----~G-~~V~kHG~~~~~~~~Gs~dvLe----aLGi~~~--~s---~e~~ 77 (287)
..++=++|+.|.|+. |+++.+++. .| .+|..-..+ +.+.|..+-|. .+|+++. .+ ...+
T Consensus 137 g~ii~lvGptGvGKT-----TtiakLA~~~~~~~G~~~V~lit~D--~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~ 209 (374)
T PRK14722 137 GGVFALMGPTGVGKT-----TTTAKLAARCVMRFGASKVALLTTD--SYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLA 209 (374)
T ss_pred CcEEEEECCCCCCHH-----HHHHHHHHHHHHhcCCCeEEEEecc--cccccHHHHHHHHHHHcCCceEecCCcccHHHH
Confidence 446668999999984 444444433 35 456554433 33566666554 5688764 33 3445
Q ss_pred HHHHHhcCeEEEeCCccchhhhhhHHHHhhh
Q 023127 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKL 108 (287)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~L 108 (287)
.+.+.+..+.++..+-+.|....+......+
T Consensus 210 l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 210 LAELRNKHMVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred HHHhcCCCEEEEcCCCCCcccHHHHHHHHHH
Confidence 5556678999999999888766666655544
No 49
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=39.08 E-value=1e+02 Score=27.59 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=77.4
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC---C-ccchhhhhhHHHHhhhCCCCh-------------hHhhhhccCCCCCCceEE
Q 023127 69 VIDLDPEGVRRCVDEAGIGFMMS---T-KYHPAMKFVRPVRKKLKVKTV-------------FNILGPMLNPACVPFAVV 131 (287)
Q Consensus 69 ~~~~s~e~~~~~l~~~g~~fl~~---~-~~~P~l~~l~~lR~~Lg~Rt~-------------~ntl~~LlNP~~~~~~v~ 131 (287)
..+.++.+.+...++.|-+.+.. | .|+-.+..|..+|+..|+.-+ -.+.+-=++-+.+-..+.
T Consensus 88 k~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVLLIv 167 (289)
T KOG4201|consen 88 KLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVLLIV 167 (289)
T ss_pred ccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHHHHHhcCCceeehHH
Confidence 45567888888899999988866 4 455669999999999987644 223333344444445566
Q ss_pred eeeChhhHHHHHHHHHHcCCCeEEEEec-CCccccccCCceeEEEEeCCeEEEEEEc
Q 023127 132 GVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFD 187 (287)
Q Consensus 132 Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~ 187 (287)
.+.+....+.+-..++.+|++.-+-|+. +-++-+--. -.++..++|....+|+++
T Consensus 168 amLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVD 223 (289)
T KOG4201|consen 168 AMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVD 223 (289)
T ss_pred HHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeec
Confidence 6778888888899999999876555654 322211111 235566666666666654
No 50
>PF11501 Nsp1: Non structural protein Nsp1; InterPro: IPR021590 Nsp1 is the N-terminal cleavage product from the viral replicase that mediates RNA replication and processing []. The specific function of the protein is unknown however the structure has been determined. The protein has a novel alpha/beta fold formed by a 6 stranded beta barrel with an alpha helix covering one end of the barrel and another helix alongside the barrel []. Nsp1 could be involved in the degradation of mRNA. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity, 0016788 hydrolase activity, acting on ester bonds, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2HSX_A 2GDT_A.
Probab=39.06 E-value=28 Score=26.78 Aligned_cols=23 Identities=17% Similarity=0.110 Sum_probs=17.5
Q ss_pred cCCCCCHHHHHHHHHHHHHccHH
Q 023127 239 SCKVNTLAEGVALAREIQLSGKA 261 (287)
Q Consensus 239 ~G~~~s~~eg~~~A~~~l~sG~a 261 (287)
.|..++.|+|++.|++++..|+.
T Consensus 17 rgfgd~vE~Al~eAR~hL~eGt~ 39 (115)
T PF11501_consen 17 RGFGDSVEEALEEARVHLAEGTC 39 (115)
T ss_dssp --S-SSHHHHHHHHHHHHHHT-E
T ss_pred hccchHHHHHHHHHHHHHhcCce
Confidence 46668999999999999999973
No 51
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=38.45 E-value=98 Score=29.98 Aligned_cols=129 Identities=20% Similarity=0.220 Sum_probs=66.2
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC--Ccc
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--TKY 94 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~--~~~ 94 (287)
.+|.||-|- .++|.+|.+.|+.|. |.+.-... -..+-|+++|+.+...... ...+++..+..+.. |.-
T Consensus 4 figigG~gm------~~la~~l~~~G~~V~--~~D~~~~~-~~~~~l~~~gi~~~~~~~~-~~~~~~~d~vV~SpgI~~~ 73 (448)
T TIGR01081 4 ILGICGTFM------GGLAMIAKQLGHEVT--GSDANVYP-PMSTQLEAQGIEIIEGFDA-AQLEPKPDLVVIGNAMKRG 73 (448)
T ss_pred EEEECHHhH------HHHHHHHHhCCCEEE--EECCCCCc-HHHHHHHHCCCEEeCCCCH-HHCCCCCCEEEECCCCCCC
Confidence 456666553 467888889999997 66643321 1223478889877532111 22233344443322 445
Q ss_pred chhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHH-HHHHHHHHcCCCeEEEE
Q 023127 95 HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVL-KMANALQRFGLKRALVV 157 (287)
Q Consensus 95 ~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~-~~~~~~~~lg~~~~lvv 157 (287)
+|.+..... +.+-+.+=.-.+..++.+.....-|+|-.-|.... ++..+++..|.+...++
T Consensus 74 ~~~~~~a~~--~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~ 135 (448)
T TIGR01081 74 NPCVEAVLN--LNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLI 135 (448)
T ss_pred CHHHHHHHH--CCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEe
Confidence 565544422 12222233334444432221234555656666554 44777888887654443
No 52
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=38.43 E-value=1.1e+02 Score=29.78 Aligned_cols=130 Identities=23% Similarity=0.312 Sum_probs=71.1
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC--C
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--T 92 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~--~ 92 (287)
+=++|-|+-|.. ++|.+|.+.|+.|. |++.-... ... -|+.+|+.+.... -.+.+++.-+.++.- |
T Consensus 10 v~viG~G~sG~s------~~a~~L~~~G~~V~--~~D~~~~~-~~~-~l~~~gi~~~~~~--~~~~~~~~d~vv~spgi~ 77 (461)
T PRK00421 10 IHFVGIGGIGMS------GLAEVLLNLGYKVS--GSDLKESA-VTQ-RLLELGAIIFIGH--DAENIKDADVVVYSSAIP 77 (461)
T ss_pred EEEEEEchhhHH------HHHHHHHhCCCeEE--EECCCCCh-HHH-HHHHCCCEEeCCC--CHHHCCCCCEEEECCCCC
Confidence 457888875542 35778899999997 44443322 233 3788898775321 122344444443322 4
Q ss_pred ccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHH-HHHHHHHcCCCeEEEEec
Q 023127 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLK-MANALQRFGLKRALVVHS 159 (287)
Q Consensus 93 ~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~-~~~~~~~lg~~~~lvv~G 159 (287)
.-+|.+..... +.+-+-+-...+..++.+ ....-|+|-.-|..... +.++++..|.+....+-|
T Consensus 78 ~~~~~~~~a~~--~~i~i~~~~e~~~~~~~~-~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 142 (461)
T PRK00421 78 DDNPELVAARE--LGIPVVRRAEMLAELMRF-RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGG 142 (461)
T ss_pred CCCHHHHHHHH--CCCcEEeHHHHHHHHHcc-CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECc
Confidence 44555433321 122223444555555542 23455666666766554 478888888654555544
No 53
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.40 E-value=1.8e+02 Score=28.31 Aligned_cols=83 Identities=12% Similarity=0.142 Sum_probs=53.2
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHH----cCCCC--CCCHHHHHHHHHh--
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA----LGVVI--DLDPEGVRRCVDE-- 83 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLea----LGi~~--~~s~e~~~~~l~~-- 83 (287)
..++=++|..|.|+.|.-.- .|..+...|.+|..--.+ +.+.|+.+-|.. +|+++ ..+++++.+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~ak--LA~~l~~~g~~V~lItaD--tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK--LGWQLLKQNRTVGFITTD--TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH--HHHHHHHcCCeEEEEeCC--ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 45677899999888641111 122234568888875543 557776665554 67765 3678888776663
Q ss_pred ----cCeEEEeCCccchhh
Q 023127 84 ----AGIGFMMSTKYHPAM 98 (287)
Q Consensus 84 ----~g~~fl~~~~~~P~l 98 (287)
.-+.++..+-.+|..
T Consensus 282 ~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 282 YVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred hcCCCCEEEEECCCCCccC
Confidence 467888887776644
No 54
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.20 E-value=23 Score=31.64 Aligned_cols=32 Identities=34% Similarity=0.474 Sum_probs=25.4
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kH 48 (287)
|=+.|-||.|+.| ++.-.|-.||..|.+|+.-
T Consensus 3 i~v~gKGGvGKTT--~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 3 LAVYGKGGIGKST--TSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEecCCCCCHHH--HHHHHHHHHHHCCCcEEEE
Confidence 3366889999987 4666778889999999854
No 55
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=37.86 E-value=24 Score=31.86 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=26.2
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG 49 (287)
|=++|=||.|+.| .+.-.|-.||..|.+|+.--
T Consensus 4 i~~~gKGGVGKTT--~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 4 FCFYGKGGIGKST--TVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhCCCEEEEEe
Confidence 4467999999986 45567788899999998763
No 56
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=37.41 E-value=23 Score=31.78 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=25.4
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEe
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~k 47 (287)
|=+.|=||.|+.| ++.-.|..||+.|.+|+.
T Consensus 3 ia~~gKGGVGKTT--~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 3 IAIYGKGGIGKST--TTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eEEeCCCcCcHHH--HHHHHHHHHHHCCCeEEE
Confidence 3467999999997 567788888899999986
No 57
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.30 E-value=2.4e+02 Score=25.81 Aligned_cols=91 Identities=20% Similarity=0.214 Sum_probs=57.5
Q ss_pred eCCCCCCCC---CccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC-CCHHHHHHHHHh-cCeEEEeCC
Q 023127 18 VGTGGDGAN---TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-LDPEGVRRCVDE-AGIGFMMST 92 (287)
Q Consensus 18 ~gtggdG~~---t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~-~s~e~~~~~l~~-~g~~fl~~~ 92 (287)
=|+||..+. ||-||-=+- =||+-++-|+--|..++=--.-+-++||..|+|+- .-.++.-..+.+ .||. .++.
T Consensus 130 GGiGGVHrGAe~t~DISaDL~-ELa~T~v~vV~AGaKsILDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~-~pl~ 207 (310)
T COG2313 130 GGIGGVHRGAEHTFDISADLT-ELARTNVTVVCAGAKSILDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFR-VPLR 207 (310)
T ss_pred cCcccccCCcccccccchhHH-HHhcCCeEEEecCchhhhccHHHHHHHHhcCcceeecCCCcccchhcccCCCc-Cccc
Confidence 355555554 888876543 35788899988887776555558899999999875 334444444443 3332 4444
Q ss_pred ccchh-hhhhHHHHhhhCC
Q 023127 93 KYHPA-MKFVRPVRKKLKV 110 (287)
Q Consensus 93 ~~~P~-l~~l~~lR~~Lg~ 110 (287)
...|. ..+++..|++||+
T Consensus 208 l~~pe~ia~~~~t~~~lgl 226 (310)
T COG2313 208 LESPEEIARILATKWQLGL 226 (310)
T ss_pred cCCHHHHHHHHHHHHHhCC
Confidence 55554 5566666777764
No 58
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=36.56 E-value=89 Score=28.17 Aligned_cols=73 Identities=8% Similarity=0.077 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCeEEEeCCcc------chhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHH
Q 023127 75 EGVRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 148 (287)
Q Consensus 75 e~~~~~l~~~g~~fl~~~~~------~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~ 148 (287)
+++.+.+...+..|+..+.. ...+.....++++.|++++.|+..+=.|. .-.+.....+..
T Consensus 18 ~~~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~-------------~~l~~~L~~~~~ 84 (274)
T cd00537 18 EAAADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNR-------------IELQSILLGAHA 84 (274)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCH-------------HHHHHHHHHHHH
Confidence 44555565544555554332 22344456677777888888875543333 233344445577
Q ss_pred cCCCeEEEEecC
Q 023127 149 FGLKRALVVHSE 160 (287)
Q Consensus 149 lg~~~~lvv~Ge 160 (287)
+|.+++++++||
T Consensus 85 ~Gi~~iL~l~GD 96 (274)
T cd00537 85 LGIRNILALRGD 96 (274)
T ss_pred CCCCeEEEeCCC
Confidence 899999999984
No 59
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=36.34 E-value=25 Score=31.16 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=24.7
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEe
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~k 47 (287)
|=++|-||.|+.| ++.-.|..||..|.+|+.
T Consensus 4 iav~~KGGvGKTT--~~~nLA~~La~~G~kVll 34 (270)
T cd02040 4 IAIYGKGGIGKST--TTQNLSAALAEMGKKVMI 34 (270)
T ss_pred EEEEeCCcCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 4456889999987 466677788899999995
No 60
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=36.18 E-value=2e+02 Score=27.75 Aligned_cols=128 Identities=24% Similarity=0.354 Sum_probs=71.9
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC--Ccc
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS--TKY 94 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~--~~~ 94 (287)
++|-||-|. -.+|.+|++.|+.|. |++.-... ..+.|+++|+.+... .. .+.+++.-+.++.. |.-
T Consensus 4 ~iGiggsGm------~~la~~L~~~G~~v~--~~D~~~~~--~~~~l~~~gi~~~~g-~~-~~~~~~~d~vV~spgi~~~ 71 (448)
T TIGR01082 4 FVGIGGIGM------SGIAEILLNRGYQVS--GSDIAENA--TTKRLEALGIPIYIG-HS-AENLDDADVVVVSAAIKDD 71 (448)
T ss_pred EEEECHHHH------HHHHHHHHHCCCeEE--EECCCcch--HHHHHHHCcCEEeCC-CC-HHHCCCCCEEEECCCCCCC
Confidence 566666443 236778889999997 55543333 455688899877543 11 22344444444432 445
Q ss_pred chhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHH-HHHHHHHHcCCCeEEEEec
Q 023127 95 HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVL-KMANALQRFGLKRALVVHS 159 (287)
Q Consensus 95 ~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~-~~~~~~~~lg~~~~lvv~G 159 (287)
+|.+.... ++.+-+.+-...+..++++ ....-|+|-.-|.... ++..+++..|.+...++-|
T Consensus 72 ~p~~~~a~--~~~i~v~~~~el~~~~~~~-~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg 134 (448)
T TIGR01082 72 NPEIVEAK--ERGIPVIRRAEMLAELMRF-RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGG 134 (448)
T ss_pred CHHHHHHH--HcCCceEeHHHHHHHHHhc-CcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECc
Confidence 56554432 2233344555566666653 2345566666666554 4577888888743444444
No 61
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=36.17 E-value=26 Score=31.52 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=25.8
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG 49 (287)
|=++|=||.|+.| ++.-.|..||+.|.+|+.-.
T Consensus 4 iav~gKGGVGKTT--~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 4 IAIYGKGGIGKST--TTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred EEEECCCCCcHHH--HHHHHHHHHHhhCCCeEEEe
Confidence 4456889999986 46667778899999998753
No 62
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=36.00 E-value=1.9e+02 Score=26.24 Aligned_cols=65 Identities=32% Similarity=0.503 Sum_probs=37.8
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHH---HhC-C-CcEEeecCCCCCCcCCHHHHH----HHcCCCC--CCCHHHHHHH
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILA---AAC-G-AKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRC 80 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~ll---A~~-G-~~V~kHG~~~~~~~~Gs~dvL----eaLGi~~--~~s~e~~~~~ 80 (287)
+.++=++|.+|.|+.| +++.++ +.. | .+|..--.+ +.+.+..+-| +.+|+++ ..++++..+.
T Consensus 194 ~~vi~~vGptGvGKTT-----t~~kLa~~~~~~~g~~~V~li~~D--~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~ 266 (282)
T TIGR03499 194 GGVIALVGPTGVGKTT-----TLAKLAARFVLEHGNKKVALITTD--TYRIGAVEQLKTYAKILGVPVKVARDPKELRKA 266 (282)
T ss_pred CeEEEEECCCCCCHHH-----HHHHHHHHHHHHcCCCeEEEEECC--ccchhHHHHHHHHHHHhCCceeccCCHHHHHHH
Confidence 3467799999999963 222222 222 4 788776544 3455554444 3357665 3556666666
Q ss_pred HHh
Q 023127 81 VDE 83 (287)
Q Consensus 81 l~~ 83 (287)
+++
T Consensus 267 l~~ 269 (282)
T TIGR03499 267 LDR 269 (282)
T ss_pred HHH
Confidence 664
No 63
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=35.87 E-value=85 Score=28.99 Aligned_cols=46 Identities=7% Similarity=0.165 Sum_probs=30.7
Q ss_pred HHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecC
Q 023127 102 RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (287)
Q Consensus 102 ~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~Ge 160 (287)
..++++.|++++.|+-..=. ++.-......-+..+|.+++++++||
T Consensus 75 ~~i~~~~g~~~i~Hltcr~~-------------n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCIDA-------------TPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHhCCCeeeecccCCC-------------CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45667888888888744422 23334444445588999999999884
No 64
>PLN02428 lipoic acid synthase
Probab=35.54 E-value=2.1e+02 Score=27.29 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=68.2
Q ss_pred HHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHH---hc--Ce----EEEeC--CccchhhhhhH
Q 023127 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA--GI----GFMMS--TKYHPAMKFVR 102 (287)
Q Consensus 34 aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~---~~--g~----~fl~~--~~~~P~l~~l~ 102 (287)
+.-.++.+|+.++-|+-.. +..++..+.- -..+.++..+.|+ +. |+ .||.- +..--....+.
T Consensus 197 lL~~L~eAG~d~i~hnlET------v~rL~~~Ir~-~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~ 269 (349)
T PLN02428 197 AVETVATSGLDVFAHNIET------VERLQRIVRD-PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTME 269 (349)
T ss_pred HHHHHHHcCCCEEccCccC------cHHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHH
Confidence 5566778999998888653 2334444431 1234444433332 22 32 23322 44433333344
Q ss_pred HHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023127 103 PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (287)
Q Consensus 103 ~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (287)
.+| ++|+. +-+++..+.|......|.-+.||+-.+.+.+....+|+..
T Consensus 270 ~Lr-elgvd--~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~ 317 (349)
T PLN02428 270 DLR-AAGVD--VVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRY 317 (349)
T ss_pred HHH-HcCCC--EEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCce
Confidence 444 34543 3477788899888899999999999999999999999964
No 65
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=34.94 E-value=2.5e+02 Score=26.56 Aligned_cols=79 Identities=16% Similarity=0.146 Sum_probs=49.5
Q ss_pred chHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHh-cCeEEEeCCccchhhhhhHHHHhhh
Q 023127 30 ISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDE-AGIGFMMSTKYHPAMKFVRPVRKKL 108 (287)
Q Consensus 30 is~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~-~g~~fl~~~~~~P~l~~l~~lR~~L 108 (287)
|-|+.|.++|..|.+|.+-|.+ ++.+.+.-+. .|-.|++--.+.|.+..-.++.+.+
T Consensus 12 wGTALA~~la~ng~~V~lw~r~----------------------~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~ 69 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRD----------------------EEIVAEINETRENPKYLPGILLPPNLKATTDLAEAL 69 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecC----------------------HHHHHHHHhcCcCccccCCccCCcccccccCHHHHH
Confidence 9999999999999999887764 3333332222 4666666555555555555554432
Q ss_pred CCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHH
Q 023127 109 KVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANA 145 (287)
Q Consensus 109 g~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~ 145 (287)
. ++...+++|.|..+.+...++
T Consensus 70 ~---------------~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 70 D---------------GADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred h---------------cCCEEEEECChHHHHHHHHHH
Confidence 2 256667777776665555554
No 66
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.40 E-value=29 Score=31.50 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.3
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
..|.||+|+.| ++.-.|..+|+.|.+|..-=.
T Consensus 63 ~S~kgGvGKSt--va~nLA~alA~~G~rVlliDa 94 (265)
T COG0489 63 TSGKGGVGKST--VAVNLAAALAQLGKRVLLLDA 94 (265)
T ss_pred EeCCCCCcHHH--HHHHHHHHHHhcCCcEEEEeC
Confidence 46789999987 677789999999999987543
No 67
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=34.36 E-value=1.7e+02 Score=26.75 Aligned_cols=128 Identities=19% Similarity=0.096 Sum_probs=85.3
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHH-cCCCCC-----CCHHHHHHHHHhcC-
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDEAG- 85 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLea-LGi~~~-----~s~e~~~~~l~~~g- 85 (287)
-++|+-||=|+|...++=..-+---|.+.|.|++.--|.+..++.-...-|+. +|+++. .|-+-+.+.+.+..
T Consensus 11 ~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~ 90 (269)
T COG0647 11 FLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQKP 90 (269)
T ss_pred EEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCC
Confidence 47899999999999877666666667799999999999887666645566666 566443 44555667777642
Q ss_pred --eEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC
Q 023127 86 --IGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (287)
Q Consensus 86 --~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~ 151 (287)
=+|+--+ ..+...=+.+|+-.+.+ -||.+..+.++|.-...-.+.+++++..+..
T Consensus 91 ~~kv~viG~------~~l~~~l~~~G~~~~~~-----~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~ 147 (269)
T COG0647 91 GKKVYVIGE------EGLKEELEGAGFELVDE-----EEPARVDAVVVGLDRTLTYEKLAEALLAIAA 147 (269)
T ss_pred CCEEEEECC------cchHHHHHhCCcEEecc-----CCCCcccEEEEecCCCCCHHHHHHHHHHHHc
Confidence 5555442 12222223455432221 2343467889999888888889998887743
No 68
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=34.30 E-value=33 Score=24.38 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=23.2
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG 49 (287)
+.|.+|.|+.| ++...+..+++.|.+|..-.
T Consensus 4 ~~g~~G~Gktt--~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTT--LAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EECCCCCCHHH--HHHHHHHHHHHCCCeEEEEC
Confidence 56778888875 56667777788899988665
No 69
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.16 E-value=47 Score=30.59 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=24.9
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
+| -|.+...+++-.+..+ -...++|.++||+.+++
T Consensus 180 HG-~y~~~p~Ld~~~L~~I-~~~~~iPLVlHGgSG~~ 214 (284)
T PRK12737 180 HG-LYKGEPKLDFERLAEI-REKVSIPLVLHGASGVP 214 (284)
T ss_pred cc-ccCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 44 6766556777766665 55668999999997643
No 70
>PRK13236 nitrogenase reductase; Reviewed
Probab=33.25 E-value=32 Score=31.55 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=45.1
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC----------CcCCHHHHHHHcCCCCCCCHHHHHHHHH
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS----------SACGSADVLEALGVVIDLDPEGVRRCVD 82 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~----------~~~Gs~dvLeaLGi~~~~s~e~~~~~l~ 82 (287)
.++-+.|=||.|+.| ++.-.|..||+.|.+|+.-..+.-. ++....|++..-+.--..+.+++.. -.
T Consensus 7 ~~~~~~GKGGVGKTt--~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~-~~ 83 (296)
T PRK13236 7 RQIAFYGKGGIGKST--TSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML-TG 83 (296)
T ss_pred eEEEEECCCcCCHHH--HHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe-eC
Confidence 356678999999986 4666677789999999986332211 1223455554321111234555432 11
Q ss_pred hcCeEEEeCC
Q 023127 83 EAGIGFMMST 92 (287)
Q Consensus 83 ~~g~~fl~~~ 92 (287)
..|+-++++.
T Consensus 84 ~~gv~llpa~ 93 (296)
T PRK13236 84 FRGVKCVESG 93 (296)
T ss_pred CCCeEEEECC
Confidence 3588888864
No 71
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=32.92 E-value=33 Score=31.59 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=28.7
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~ 52 (287)
|=++|-||.|+.| ++.-.|..+|..|.+|+.-..+.
T Consensus 3 Iav~gKGGvGKTT--~a~nLA~~La~~g~rVLlID~Dp 38 (296)
T TIGR02016 3 IAIYGKGGSGKSF--TTTNLSHMMAEMGKRVLQLGCDP 38 (296)
T ss_pred EEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEEecC
Confidence 3456899999996 57778888899999999876543
No 72
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=32.59 E-value=46 Score=28.57 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=19.3
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEE
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~ 46 (287)
|-|.||||.|+. |++-++ +..|+++.
T Consensus 3 I~ITGTPGvGKT-----T~~~~L-~~lg~~~i 28 (180)
T COG1936 3 IAITGTPGVGKT-----TVCKLL-RELGYKVI 28 (180)
T ss_pred EEEeCCCCCchH-----HHHHHH-HHhCCcee
Confidence 558999999994 444444 48888886
No 73
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=32.25 E-value=1.8e+02 Score=26.25 Aligned_cols=120 Identities=12% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC---C-ccchhhhhhHHHHhhhCCC--------ChhHhhhhccCCCCCCceEEeeeCh
Q 023127 69 VIDLDPEGVRRCVDEAGIGFMMS---T-KYHPAMKFVRPVRKKLKVK--------TVFNILGPMLNPACVPFAVVGVYNE 136 (287)
Q Consensus 69 ~~~~s~e~~~~~l~~~g~~fl~~---~-~~~P~l~~l~~lR~~Lg~R--------t~~ntl~~LlNP~~~~~~v~Gv~h~ 136 (287)
+...++.+.++.+++.|.+-+.. + .|.=.+..+..+|+...++ ....+.+--..-+.+-..+..+..+
T Consensus 58 ~~~~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~ 137 (247)
T PRK13957 58 RADYHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTP 137 (247)
T ss_pred CCCCCHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCH
Confidence 34468999999999998877754 3 4556688888898876432 2223333333333333455666777
Q ss_pred hhHHHHHHHHHHcCCCeEEEEec-CCccccccCCceeEEEEeCCeEEEEEEccC
Q 023127 137 NLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPL 189 (287)
Q Consensus 137 ~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~ 189 (287)
+-...+.+.+..+|.+..+=||. +-.+ ........+..+++-...++.+++.
T Consensus 138 ~~l~~l~~~a~~lGle~LVEVh~~~El~-~a~~~ga~iiGINnRdL~t~~vd~~ 190 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEVHTEDEAK-LALDCGAEIIGINTRDLDTFQIHQN 190 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEECCHHHHH-HHHhCCCCEEEEeCCCCccceECHH
Confidence 77777888888999876666764 2222 1233345566777766666766653
No 74
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.17 E-value=32 Score=30.72 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=42.5
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCC-----CC--C--CcCCHHHHHHHcCC-CCCCCHHHHHHHHHh
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR-----SS--S--SACGSADVLEALGV-VIDLDPEGVRRCVDE 83 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~-----~~--~--~~~Gs~dvLeaLGi-~~~~s~e~~~~~l~~ 83 (287)
+|=+++-||.|+.| ++.-.|-.||..|.+|+.-=.+ .. . ...+..|+|..... .-..+++++-.. ..
T Consensus 4 iIav~~KGGVGKTT--~~~nLA~~la~~G~kVLliD~Dpq~~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~-~~ 80 (270)
T PRK13185 4 VLAVYGKGGIGKST--TSSNLSAAFAKLGKKVLQIGCDPKHDSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVYE-GY 80 (270)
T ss_pred EEEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEeccCCcchhhhhcCCCCCcHHHHHHhccccccCCCHHHheee-CC
Confidence 34456889999996 4566777888999999864322 21 1 12344566643221 112334444211 12
Q ss_pred cCeEEEeCC
Q 023127 84 AGIGFMMST 92 (287)
Q Consensus 84 ~g~~fl~~~ 92 (287)
.|+-++++.
T Consensus 81 ~~l~~ip~~ 89 (270)
T PRK13185 81 NGVDCVEAG 89 (270)
T ss_pred CCcEEEECC
Confidence 578888763
No 75
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=32.14 E-value=55 Score=30.16 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=25.6
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
+|| -|.|...+++-.+-.+ -+..++|.++||+.+++
T Consensus 179 ~HG-~y~~~p~Ld~~~L~~i-~~~~~vPLVlHGgSG~~ 214 (284)
T PRK12857 179 AHG-PYKGEPKLDFDRLAKI-KELVNIPIVLHGSSGVP 214 (284)
T ss_pred ccc-ccCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 344 6766557777777666 45569999999997654
No 76
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=31.73 E-value=40 Score=31.69 Aligned_cols=46 Identities=30% Similarity=0.420 Sum_probs=32.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHH
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA 65 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLea 65 (287)
+=++|=||.|+.| ++.+.|..+|+.|-+|+.-..+ +..+..|+|..
T Consensus 5 v~f~GKGGVGKTT--~aaA~A~~lA~~g~kvLlvStD---PAhsL~d~f~~ 50 (322)
T COG0003 5 VFFTGKGGVGKTT--IAAATAVKLAESGKKVLLVSTD---PAHSLGDVFDL 50 (322)
T ss_pred EEEecCCcccHHH--HHHHHHHHHHHcCCcEEEEEeC---CCCchHhhhcc
Confidence 3368999999987 6777889999999887765443 34445566654
No 77
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=31.52 E-value=32 Score=26.24 Aligned_cols=26 Identities=42% Similarity=0.364 Sum_probs=21.0
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEE
Q 023127 16 DIVGTGGDGANTVNISTGASILAAACGAKVA 46 (287)
Q Consensus 16 D~~gtggdG~~t~nis~~aa~llA~~G~~V~ 46 (287)
=++|++|.|+ ||++..+....|++++
T Consensus 3 ~I~G~~gsGK-----ST~a~~La~~~~~~~i 28 (121)
T PF13207_consen 3 IISGPPGSGK-----STLAKELAERLGFPVI 28 (121)
T ss_dssp EEEESTTSSH-----HHHHHHHHHHHTCEEE
T ss_pred EEECCCCCCH-----HHHHHHHHHHHCCeEE
Confidence 3789999998 7788888777898876
No 78
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=30.80 E-value=33 Score=28.44 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=22.6
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
.+-||.|+.| ++...|..+|..|.+|+.-=.
T Consensus 5 ~~kGG~GKTt--~a~~la~~la~~g~~VlliD~ 35 (195)
T PF01656_consen 5 SGKGGVGKTT--IAANLAQALARKGKKVLLIDL 35 (195)
T ss_dssp ESSTTSSHHH--HHHHHHHHHHHTTS-EEEEEE
T ss_pred cCCCCccHHH--HHHHHHhcccccccccccccc
Confidence 3458888886 577788888899999996433
No 79
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=30.77 E-value=1.7e+02 Score=27.92 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=71.6
Q ss_pred HHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHH-HHHHHHHhcCeEEEeC-CccchhhhhhHHHHhhhCCCCh
Q 023127 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPE-GVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTV 113 (287)
Q Consensus 36 ~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e-~~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~Lg~Rt~ 113 (287)
-+++.|++-+..|=- .-..|..=.|-.+|+++-++.+ -.-+.+.+.|+.+++. ..+.... +...+++|.
T Consensus 261 ~lL~~cDl~if~~~R---QQgiGnI~lLl~~G~~v~L~~~np~~~~l~~~~ipVlf~~d~L~~~~--v~ea~rql~---- 331 (360)
T PF07429_consen 261 ALLSRCDLGIFNHNR---QQGIGNICLLLQLGKKVFLSRDNPFWQDLKEQGIPVLFYGDELDEAL--VREAQRQLA---- 331 (360)
T ss_pred HHHHhCCEEEEeech---hhhHhHHHHHHHcCCeEEEecCChHHHHHHhCCCeEEeccccCCHHH--HHHHHHHHh----
Confidence 467899988887742 2346788888889999987755 5778889999988887 7787766 888888875
Q ss_pred hHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHH
Q 023127 114 FNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 148 (287)
Q Consensus 114 ~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~ 148 (287)
....+-+.+|.|.|.+--..++..
T Consensus 332 -----------~~dk~~iaFf~pny~~~w~~~l~~ 355 (360)
T PF07429_consen 332 -----------NVDKQQIAFFAPNYLQGWRQALRL 355 (360)
T ss_pred -----------hCcccceeeeCCchHHHHHHHHHH
Confidence 234456689999999999888854
No 80
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=30.66 E-value=46 Score=28.10 Aligned_cols=32 Identities=31% Similarity=0.370 Sum_probs=24.3
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG 49 (287)
+.++ ++||||.|+ ||++..++...|++-.--|
T Consensus 8 PNIL-vtGTPG~GK-----stl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNIL-VTGTPGTGK-----STLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEE-EeCCCCCCc-----hhHHHHHHHHhCCceEehh
Confidence 3444 899999999 6788888888888766444
No 81
>KOG1220 consensus Phosphoglucomutase/phosphomannomutase [Carbohydrate transport and metabolism]
Probab=30.66 E-value=1.1e+02 Score=31.15 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=78.8
Q ss_pred CCCCCCC-CccchHHHHHHHHhCCCcEEeecCCCCCCcCC-HHHHHHHc-CCCCCCCHHHHHHHHHhcCeEEEeC---Cc
Q 023127 20 TGGDGAN-TVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMMS---TK 93 (287)
Q Consensus 20 tggdG~~-t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G-s~dvLeaL-Gi~~~~s~e~~~~~l~~~g~~fl~~---~~ 93 (287)
-|+||+- +-+.+.++|.++...|.+|..-|--..|+-.- +...|++. ||=++.|. ..-+.+|+-|.+- +.
T Consensus 107 iG~D~R~~S~~fA~l~a~vf~~~g~~v~lf~~~v~TP~vpfav~~l~~dAgIMiTASH----nPk~dNGyKvYwsNG~qi 182 (607)
T KOG1220|consen 107 IGHDGRYNSKRFAELVAAVFLLNGFKVYLFSELVPTPFVPFAVLTLGADAGIMITASH----NPKEDNGYKVYWSNGAQI 182 (607)
T ss_pred EecCCccchHHHHHHHHHHHHhCCceEEEeccccCCCcchhHHHHhccCceEEEeccC----CccccCCEEEEecCCccc
Confidence 4899996 77899999999999999999999666666543 56667776 66555432 2236789999877 47
Q ss_pred cchhhhhhHHHHhh-hCCCC---hhHhhhhccCCCCCCceEEeeeChhhHHHHHH
Q 023127 94 YHPAMKFVRPVRKK-LKVKT---VFNILGPMLNPACVPFAVVGVYNENLVLKMAN 144 (287)
Q Consensus 94 ~~P~l~~l~~lR~~-Lg~Rt---~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~ 144 (287)
..|-...+...+.. +--|. -.|.+ .-+| ..+...++..|+|.+.+-+
T Consensus 183 i~PhD~~I~~~~~~nl~p~~s~wd~slv--~s~~--l~~d~~~~~~~~~~e~~k~ 233 (607)
T KOG1220|consen 183 ISPHDEKISDSIEANLEPRLSSWDDSLV--KSHP--LLHDILAVIIPPYFEVYKE 233 (607)
T ss_pred cCchhHHHHHHHHhccCcccchhhhhHH--hcch--hhcCchhccchHHHHHHHh
Confidence 88888888777642 22222 12221 1122 2334557777888777765
No 82
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=29.92 E-value=1.3e+02 Score=26.45 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=40.1
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCC
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~ 70 (287)
-++|+-||-+++.+.++=..-+---|.+.|+++..-.|... +..-..+.|+.+|++.
T Consensus 11 ~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~-~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 11 FLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPR-NIFSLHKTLKSLGINA 67 (242)
T ss_pred EEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCC-ChHHHHHHHHHCCCCc
Confidence 36899999999888655444445556778999998877432 1122347899999976
No 83
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=29.88 E-value=93 Score=29.42 Aligned_cols=69 Identities=9% Similarity=0.095 Sum_probs=45.7
Q ss_pred EEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC---CCeEEEEecCC
Q 023127 88 FMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG---LKRALVVHSEG 161 (287)
Q Consensus 88 fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg---~~~~lvv~GeG 161 (287)
++.-+.|.+++.++...|++.|+++.+-+++-+-|-.. -|..+|.-...+.+-+-.-. ..+-+++=|++
T Consensus 3 IIt~~~~~~~~~~la~~r~~~G~~~~vv~v~~I~~~f~-----~G~~~~~aIR~fi~~~y~~~~~~~~~yvlLvGd~ 74 (378)
T PF01364_consen 3 IITPPEFMDAAQRLAEWRRSQGYKVLVVTVEDIYNEFS-----YGIPDPTAIRNFIRYAYDNWSPPKPRYVLLVGDA 74 (378)
T ss_dssp EEE-GGGGGG-HHHHHHHHHTT-EEEEEEHHHH-SS------------HHHHHHHHHHHHHST----EEEEEEES-T
T ss_pred EEECHHHHHHHHHHHHHHHHcCCcEEEEEHHHhhhhhh-----hccccHHHHHHHHHHHHHhcccCCCcEEEEEccc
Confidence 45568899999999999999999999999999988754 47888888877777666655 34557776766
No 84
>PLN02645 phosphoglycolate phosphatase
Probab=29.69 E-value=82 Score=29.02 Aligned_cols=71 Identities=14% Similarity=0.105 Sum_probs=47.6
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCC-----CHHHHHHHHHhc
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-----DPEGVRRCVDEA 84 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~-----s~e~~~~~l~~~ 84 (287)
++|+-||=++|...++=..-+--.+-..|.+++.-.|++..+..-..+-|+.+|+++.. +...+...|++.
T Consensus 32 ~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts~~~~~~~l~~~ 107 (311)
T PLN02645 32 IFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSSSFAAAAYLKSI 107 (311)
T ss_pred EEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeehHHHHHHHHHhh
Confidence 57999998888775543333333567789999998888865555556777899987652 223455556554
No 85
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=29.45 E-value=73 Score=28.89 Aligned_cols=61 Identities=36% Similarity=0.436 Sum_probs=39.5
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCC-CC-c--CC------HHHHHHHcCCCCCCCHHHH
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS-SS-A--CG------SADVLEALGVVIDLDPEGV 77 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~-~~-~--~G------s~dvLeaLGi~~~~s~e~~ 77 (287)
|-+.|-||-|++| +|.=.|..+|..|.+|+.+|-+.- .| + .| .-|.|...|--.+..++++
T Consensus 4 iAiYGKGGIGKST--ts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledv 74 (278)
T COG1348 4 IAIYGKGGIGKST--TSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDV 74 (278)
T ss_pred EEEecCCCcCcch--hHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHh
Confidence 4578999999986 344455556888999999997652 22 2 12 4677777774333445543
No 86
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=29.34 E-value=40 Score=30.87 Aligned_cols=34 Identities=38% Similarity=0.482 Sum_probs=26.2
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023127 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (287)
Q Consensus 16 D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~ 51 (287)
=++|=||.|+.| .+.-.|..||..|.+|+.-..+
T Consensus 4 a~~gKGGVGKTT--ta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 4 AVYGKGGIGKST--TSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred EEECCCCCcHHH--HHHHHHHHHHHCCCeEEEEecc
Confidence 367889999986 3555677789999999975443
No 87
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=28.75 E-value=1.4e+02 Score=28.40 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=38.7
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeCCccch
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 96 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~~~~~P 96 (287)
+.|||| -+|.++-+....+|+|++.|=.....++.. -++...--.+..+.++...-..+.++.+...|.-.+
T Consensus 95 vig~Gg------yvs~P~~~Aa~~~~iPv~ihEqn~~~G~an--k~~~~~a~~V~~~f~~~~~~~~~~~~~~tG~Pvr~~ 166 (357)
T COG0707 95 VIGTGG------YVSGPVGIAAKLLGIPVIIHEQNAVPGLAN--KILSKFAKKVASAFPKLEAGVKPENVVVTGIPVRPE 166 (357)
T ss_pred EEecCC------ccccHHHHHHHhCCCCEEEEecCCCcchhH--HHhHHhhceeeeccccccccCCCCceEEecCcccHH
Confidence 356665 156667777777899999999887766432 122222222333333333333344455555554433
No 88
>PRK12928 lipoyl synthase; Provisional
Probab=28.70 E-value=2.1e+02 Score=26.37 Aligned_cols=107 Identities=14% Similarity=0.168 Sum_probs=70.0
Q ss_pred HHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHH---hcC--e----EEEeC--CccchhhhhhHHH
Q 023127 36 ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EAG--I----GFMMS--TKYHPAMKFVRPV 104 (287)
Q Consensus 36 ~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~---~~g--~----~fl~~--~~~~P~l~~l~~l 104 (287)
..+.++|..++.|+- .++.++++.+.=. .+.++..+.++ +.| + .||.- +..---...+..+
T Consensus 157 ~~l~~Ag~~i~~hnl------Et~~~vl~~m~r~--~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~L 228 (290)
T PRK12928 157 ATVLAAKPDVFNHNL------ETVPRLQKAVRRG--ADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDL 228 (290)
T ss_pred HHHHHcCchhhcccC------cCcHHHHHHhCCC--CCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHH
Confidence 335567788888873 2347888888532 45655544443 344 2 23322 4444444445555
Q ss_pred HhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023127 105 RKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (287)
Q Consensus 105 R~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (287)
|+ +++ -+=++++.+.|.....-|..+++|+-.+.+.+....+|+..
T Consensus 229 re-l~~--d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~ 274 (290)
T PRK12928 229 RA-VGC--DRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSH 274 (290)
T ss_pred Hh-cCC--CEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCce
Confidence 53 554 33455688889888888999999999999999999999964
No 89
>PLN02540 methylenetetrahydrofolate reductase
Probab=28.54 E-value=1.1e+02 Score=31.06 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=46.4
Q ss_pred HHHHHHhcCeEEEeCCc------cchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcC
Q 023127 77 VRRCVDEAGIGFMMSTK------YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG 150 (287)
Q Consensus 77 ~~~~l~~~g~~fl~~~~------~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg 150 (287)
..+.|.+.+-.|+.... -.-.+.-...+++++|+.++.|+...=.|. .-++...+-+..+|
T Consensus 20 ~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~-------------~~L~~~L~~a~~~G 86 (565)
T PLN02540 20 RMDRMVAHGPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPV-------------EKIDHALETIKSNG 86 (565)
T ss_pred HHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCH-------------HHHHHHHHHHHHCC
Confidence 33455667777776532 223455667788889999998884443332 23344444557899
Q ss_pred CCeEEEEecC
Q 023127 151 LKRALVVHSE 160 (287)
Q Consensus 151 ~~~~lvv~Ge 160 (287)
.+++++++||
T Consensus 87 IrNILALrGD 96 (565)
T PLN02540 87 IQNILALRGD 96 (565)
T ss_pred CCEEEEECCC
Confidence 9999999984
No 90
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.15 E-value=1e+02 Score=26.04 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=23.6
Q ss_pred CCcceeeC-CCCCCCCCccchHHHHHHHHhCCCcEEe
Q 023127 12 GDAVDIVG-TGGDGANTVNISTGASILAAACGAKVAK 47 (287)
Q Consensus 12 ~~~~D~~g-tggdG~~t~nis~~aa~llA~~G~~V~k 47 (287)
.++|=+++ .||.|+.| ++...|..+|..|.+|+.
T Consensus 17 ~kvI~v~s~kgG~GKTt--~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 17 IKVLLITSVKPGEGKST--TSANIAVAFAQAGYKTLL 51 (204)
T ss_pred CcEEEEecCCCCCCHHH--HHHHHHHHHHhCCCeEEE
Confidence 34555554 46777765 566677788899999986
No 91
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.65 E-value=69 Score=29.52 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=24.8
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
+| -|.+...+++-.+-.+ -...++|.++||+.+++
T Consensus 180 HG-~y~~~p~Ld~~~L~~I-~~~~~vPLVLHGgSG~~ 214 (284)
T PRK09195 180 HG-MYKGEPKLDFDRLENI-RQWVNIPLVLHGASGLP 214 (284)
T ss_pred cc-ccCCCCcCCHHHHHHH-HHHhCCCeEEecCCCCC
Confidence 44 5666457777776665 45569999999997654
No 92
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=27.24 E-value=1.3e+02 Score=28.35 Aligned_cols=45 Identities=27% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCC
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG 58 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G 58 (287)
..+|-++|++|.|+.|+ .-.....+...|.+|..-..+..++..|
T Consensus 56 ~~~igi~G~~GaGKSTl--~~~l~~~l~~~g~~v~vi~~Dp~s~~~~ 100 (332)
T PRK09435 56 ALRIGITGVPGVGKSTF--IEALGMHLIEQGHKVAVLAVDPSSTRTG 100 (332)
T ss_pred cEEEEEECCCCCCHHHH--HHHHHHHHHHCCCeEEEEEeCCCccccc
Confidence 45799999999999752 2223334456799999888887666544
No 93
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.18 E-value=64 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=18.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEE
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~ 46 (287)
|.++|.||. -+..|..+|..|++|.
T Consensus 3 I~ViGlGyv-------Gl~~A~~lA~~G~~V~ 27 (185)
T PF03721_consen 3 IAVIGLGYV-------GLPLAAALAEKGHQVI 27 (185)
T ss_dssp EEEE--STT-------HHHHHHHHHHTTSEEE
T ss_pred EEEECCCcc-------hHHHHHHHHhCCCEEE
Confidence 567899994 4577889999999998
No 94
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=27.05 E-value=38 Score=31.03 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=27.0
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~ 52 (287)
|=+.|-||-|++| ++.=.|..+|..|.+|+..|-+.
T Consensus 3 IAiYGKGGIGKST--~~~Nlsaala~~G~kVl~iGCDP 38 (273)
T PF00142_consen 3 IAIYGKGGIGKST--TASNLSAALAEMGKKVLQIGCDP 38 (273)
T ss_dssp EEEEESTTSSHHH--HHHHHHHHHHHTT--EEEEEESS
T ss_pred EEEEcCCCcccCh--hhhHHHHHHHhccceeeEecccC
Confidence 3478999999986 45557777899999999999755
No 95
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=27.01 E-value=48 Score=27.03 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=23.9
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
.+.||.|+.| ++.-.|..+|..|.+|+.--.
T Consensus 6 ~~kgG~GKtt--~a~~la~~l~~~g~~vllvD~ 36 (179)
T cd02036 6 SGKGGVGKTT--TTANLGTALAQLGYKVVLIDA 36 (179)
T ss_pred eCCCCCCHHH--HHHHHHHHHHhCCCeEEEEeC
Confidence 3568999986 566677788899999987643
No 96
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=26.92 E-value=2.7e+02 Score=25.06 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHhcCeEEEeCCccc----hhhhh---hHHHHhhh--------CCCChhHhhhhccCCCCCCceEEeeeCh
Q 023127 72 LDPEGVRRCVDEAGIGFMMSTKYH----PAMKF---VRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (287)
Q Consensus 72 ~s~e~~~~~l~~~g~~fl~~~~~~----P~l~~---l~~lR~~L--------g~Rt~~ntl~~LlNP~~~~~~v~Gv~h~ 136 (287)
-+|-+.++.+.+.|+-+++.-++. +.-.. +..+.+.+ |+|| .+.++.|+. ++..+.++|-+--
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~-~G~~rViiGt~av 108 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLD-AGVARVIIGTAAV 108 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHH-CCCCEEEEeccee
Confidence 478888888999999999874333 22222 33333333 6776 678888998 7888888886554
Q ss_pred hhHHHHHHHHHHcCCCeE
Q 023127 137 NLVLKMANALQRFGLKRA 154 (287)
Q Consensus 137 ~~~~~~~~~~~~lg~~~~ 154 (287)
+=.+.+.++++..| ++.
T Consensus 109 ~~p~~v~~~~~~~g-~ri 125 (241)
T COG0106 109 KNPDLVKELCEEYG-DRI 125 (241)
T ss_pred cCHHHHHHHHHHcC-CcE
Confidence 55556788888888 553
No 97
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=26.78 E-value=47 Score=29.82 Aligned_cols=32 Identities=34% Similarity=0.383 Sum_probs=24.8
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kH 48 (287)
|=++|=||.|+.| .+.-.|..||+.|.+|+.-
T Consensus 4 iav~~KGGVGKTT--~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 4 VAIYGKGGIGKST--TTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred EEEeCCCCccHHH--HHHHHHHHHHHCCCcEEEE
Confidence 4456789999986 3555677789999999985
No 98
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.31 E-value=60 Score=22.65 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.6
Q ss_pred HHHHHHHhcCeEEEeCCccchhh
Q 023127 76 GVRRCVDEAGIGFMMSTKYHPAM 98 (287)
Q Consensus 76 ~~~~~l~~~g~~fl~~~~~~P~l 98 (287)
+++..|.+.||.|++.|.-.-+-
T Consensus 14 E~A~~La~~GIRFVpiPv~~dee 36 (61)
T PF07131_consen 14 EMAHSLAHIGIRFVPIPVVTDEE 36 (61)
T ss_pred HHHHHHHHcCceeeccccccHHH
Confidence 46668899999999999776654
No 99
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=26.14 E-value=46 Score=29.64 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=23.2
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023127 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (287)
Q Consensus 16 D~~gtggdG~~t~nis~~aa~llA~~G~~V~kH 48 (287)
=+.|=||.|+.| ++.-.|..||..|.+|+.-
T Consensus 4 ~~~gKGGVGKTT--~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 4 AVYGKGGIGKST--TSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred EEEcCCcCcHHH--HHHHHHHHHHhCCCeEEEE
Confidence 356889999986 3555666778999999854
No 100
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=26.13 E-value=3e+02 Score=25.89 Aligned_cols=85 Identities=24% Similarity=0.369 Sum_probs=58.4
Q ss_pred cEEeecCCCCCC--cCC--HHHHHHHc---CCCCCCCHHHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHh
Q 023127 44 KVAKQGSRSSSS--ACG--SADVLEAL---GVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNI 116 (287)
Q Consensus 44 ~V~kHG~~~~~~--~~G--s~dvLeaL---Gi~~~~s~e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~nt 116 (287)
+.-.||.+..++ |.| ++|+.++| |=-++.+.|+.++.|.+. .+..+|++.|-=|+-.+
T Consensus 186 ~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~---------------elqa~~R~~~~LtcadI 250 (382)
T COG3448 186 PANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRET---------------ELQALRRRMGELTCADI 250 (382)
T ss_pred cccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHH---------------HHHHHHHHhccccHHHh
Confidence 345789888765 455 78877766 767788899999998875 46778888876565555
Q ss_pred hhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCC
Q 023127 117 LGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLK 152 (287)
Q Consensus 117 l~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~ 152 (287)
+. + -|+++.-....+.-.+.++.=+.+
T Consensus 251 MS----r-----dVvtv~~~ts~dhA~~ll~~H~ik 277 (382)
T COG3448 251 MS----R-----DVVTVSTDTSIDHARKLLQEHRIK 277 (382)
T ss_pred cC----c-----cceecCCcCChHHHHHHHHHcCcc
Confidence 32 2 566776666666656666666663
No 101
>PF14207 DpnD-PcfM: DpnD/PcfM-like protein
Probab=26.12 E-value=71 Score=21.30 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHccH
Q 023127 242 VNTLAEGVALAREIQLSGK 260 (287)
Q Consensus 242 ~~s~~eg~~~A~~~l~sG~ 260 (287)
++|.++|++++++.|.++.
T Consensus 18 A~s~eeA~~~v~~~y~~~e 36 (48)
T PF14207_consen 18 AESEEEAIEKVRDAYRNEE 36 (48)
T ss_pred eCCHHHHHHHHHHHHhCCC
Confidence 5789999999999998774
No 102
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=25.96 E-value=43 Score=29.95 Aligned_cols=42 Identities=29% Similarity=0.378 Sum_probs=31.1
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHH
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL 63 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvL 63 (287)
+.|.||.|+.| ++...|..+|+.|.+|+.-..+.. ....|+|
T Consensus 5 ~~gkgG~GKtt--~a~~la~~~a~~g~~vLlvd~D~~---~sl~~~~ 46 (254)
T cd00550 5 FGGKGGVGKTT--ISAATAVRLAEQGKKVLLVSTDPA---HSLSDSF 46 (254)
T ss_pred EECCCCchHHH--HHHHHHHHHHHCCCCceEEeCCCc---ccHHHHh
Confidence 56889999987 577788889999999998765542 2445554
No 103
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=25.86 E-value=80 Score=29.11 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=24.7
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
++| -|.|...+++-.+..+ -.+.++|.++||+.+++
T Consensus 180 ~HG-~Y~~~p~L~~~~L~~I-~~~~~iPLVLHGgSG~~ 215 (285)
T PRK07709 180 VHG-PYKGEPNLGFAEMEQV-RDFTGVPLVLHGGTGIP 215 (285)
T ss_pred ccc-CcCCCCccCHHHHHHH-HHHHCCCEEEeCCCCCC
Confidence 344 5666556777666554 56679999999995543
No 104
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=25.79 E-value=2.3e+02 Score=25.18 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=52.3
Q ss_pred cCCCCCCCHHHHHHHHHhcCeEEEeC--Cccchhhh-hhHH------HHhhhCCCChhHhhhhccCCCCCCceEEeeeCh
Q 023127 66 LGVVIDLDPEGVRRCVDEAGIGFMMS--TKYHPAMK-FVRP------VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNE 136 (287)
Q Consensus 66 LGi~~~~s~e~~~~~l~~~g~~fl~~--~~~~P~l~-~l~~------lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~ 136 (287)
+|+|-..++.+..+.+++.|.-++.. |.--|.++ ..++ ++.-..++-.+..+..+-+-...+..++++++|
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 36655555677788888888888866 43333332 1211 222222234555555554433444567778787
Q ss_pred hhH---HHHHHHHHHcCCCeEEEE
Q 023127 137 NLV---LKMANALQRFGLKRALVV 157 (287)
Q Consensus 137 ~~~---~~~~~~~~~lg~~~~lvv 157 (287)
-|. +.+.+.++..|.+ .+++
T Consensus 88 ~~~~G~~~fi~~~~~aG~~-giii 110 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVD-GLII 110 (242)
T ss_pred HHHhCHHHHHHHHHHCCCc-EEEE
Confidence 443 6667777788874 4555
No 105
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=25.67 E-value=2e+02 Score=26.56 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=24.4
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
|=+=|-||.|+.| .|.-.|.-+|..+-+|+.-+.
T Consensus 22 ifVGGKGGVGKTT--cs~sLAvqla~~r~~vLiIST 55 (323)
T KOG2825|consen 22 IFVGGKGGVGKTT--CSCSLAVQLAKVRESVLIIST 55 (323)
T ss_pred EEEcCcCCcCccc--hhhHHHHHHhccCCceEEeec
Confidence 3355778999987 566677777887777776554
No 106
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=25.65 E-value=58 Score=30.28 Aligned_cols=114 Identities=22% Similarity=0.200 Sum_probs=69.7
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC---CCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC-C
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS---SSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS-T 92 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~---~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~-~ 92 (287)
+.|||+.|.. +...++|.-|.+++--=+++ ..-..|-.-.+..+|+....+.+..- +++.. -
T Consensus 7 qyGtG~vGv~------air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avl--------Atl~~~~ 72 (350)
T COG3804 7 QYGTGSVGVA------AIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVL--------ATLADAV 72 (350)
T ss_pred EeccchHHHH------HHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccce--------eccccce
Confidence 5789987764 45667788788887322222 12223333334447877666665553 33332 2
Q ss_pred ccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC
Q 023127 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (287)
Q Consensus 93 ~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~ 151 (287)
.|.|.+..+.++|+-|+ .=+|.+.+ .+..+.=+++-|+..++.-+.+++.|.
T Consensus 73 ~y~~~~~~~~~y~rlL~--aGiNVv~~-----g~~l~yPw~~~PelaeKpl~lAaraGn 124 (350)
T COG3804 73 IYAPLLPSVDEYARLLR--AGINVVTP-----GPVLQYPWFYPPELAEKPLELAARAGN 124 (350)
T ss_pred eeecccchHHHHHHHHH--cCCceecc-----CccccCCCcCChHHhhchHHHHHhcCC
Confidence 33333334777777765 56777654 122445588999999999999999985
No 107
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=25.49 E-value=83 Score=29.04 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=24.0
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
++| -|.|...+++-.+..+ -++.++|.++||+.+++
T Consensus 180 ~HG-~Y~~~p~Ld~~~L~~I-~~~~~vPLVLHGgSG~~ 215 (286)
T PRK08610 180 VHG-PYKGEPKLGFKEMEEI-GLSTGLPLVLHGGTGIP 215 (286)
T ss_pred ccc-ccCCCCCCCHHHHHHH-HHHHCCCEEEeCCCCCC
Confidence 344 5655446666666554 56679999999995543
No 108
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=24.92 E-value=1.5e+02 Score=32.12 Aligned_cols=36 Identities=28% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
+..+ |.|.||-|+.| .-..+..+|.++|-+|++...
T Consensus 686 dy~L-I~GMPGTGKTT--tI~~LIkiL~~~gkkVLLtsy 721 (1100)
T KOG1805|consen 686 DYAL-ILGMPGTGKTT--TISLLIKILVALGKKVLLTSY 721 (1100)
T ss_pred chhe-eecCCCCCchh--hHHHHHHHHHHcCCeEEEEeh
Confidence 4445 78999999984 123345568889999998654
No 109
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=24.92 E-value=2e+02 Score=27.25 Aligned_cols=120 Identities=13% Similarity=0.208 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC----CccchhhhhhHHHHhh-hCCC--------ChhHhhhhccCCCCCCceEEeeeC
Q 023127 69 VIDLDPEGVRRCVDEAGIGFMMS----TKYHPAMKFVRPVRKK-LKVK--------TVFNILGPMLNPACVPFAVVGVYN 135 (287)
Q Consensus 69 ~~~~s~e~~~~~l~~~g~~fl~~----~~~~P~l~~l~~lR~~-Lg~R--------t~~ntl~~LlNP~~~~~~v~Gv~h 135 (287)
.-..+|.++++.+++.|.+-+.. ..|.=.+..|..+|+. ..++ ....+.+-=...+.+-..+.++..
T Consensus 136 ~~~~dp~~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~ 215 (338)
T PLN02460 136 RENFDPVEIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLP 215 (338)
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCC
Confidence 33568999999999999887765 4566668889999986 4431 111111111111223344567888
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEec-CCccccccCC-ceeEEEEeCCeEEEEEEccC
Q 023127 136 ENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLG-PGLILDVTQEKIERFSFDPL 189 (287)
Q Consensus 136 ~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~-~t~v~~~~~g~~~~~~~~p~ 189 (287)
+.-+..+.+.++.+|.+-.+=||. +-++- -... ...+..++|-...+|.++..
T Consensus 216 ~~~L~~l~~~A~~LGme~LVEVH~~~Eler-Al~~~ga~iIGINNRdL~Tf~vDl~ 270 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALIEVHDEREMDR-VLGIEGVELIGINNRSLETFEVDIS 270 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHH-HHhcCCCCEEEEeCCCCCcceECHH
Confidence 888888999999999976566774 22221 2222 35677888877777776653
No 110
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=24.90 E-value=49 Score=25.20 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=38.2
Q ss_pred EeecCCCCCCcCCHHHHHHHc---CCCC-------CCCHHHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhC
Q 023127 46 AKQGSRSSSSACGSADVLEAL---GVVI-------DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLK 109 (287)
Q Consensus 46 ~kHG~~~~~~~~Gs~dvLeaL---Gi~~-------~~s~e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg 109 (287)
+.+|+..++ |+.+.++.| |+++ ..++++..+.|++.||.+-.-..+.|......-+++..+
T Consensus 9 l~~g~~~ip---ga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 9 LYNGNEPIP---GAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp SEETTEE-T---THHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred eEeCCCcCc---CHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 344554443 555555555 7643 466789999999999886666788888777777776433
No 111
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=24.83 E-value=66 Score=19.85 Aligned_cols=31 Identities=29% Similarity=0.265 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcc
Q 023127 229 ILNAAAALLVSCKVNTLAEGVALAREIQLSG 259 (287)
Q Consensus 229 ~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG 259 (287)
.+|-|-+|.-+...+++++|+.+-+++++++
T Consensus 4 ~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 4 QFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 5688899999988889999999988887654
No 112
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=24.74 E-value=1.1e+02 Score=27.56 Aligned_cols=70 Identities=17% Similarity=-0.029 Sum_probs=46.6
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCC----C-HHHHHHHHHh
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL----D-PEGVRRCVDE 83 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~----s-~e~~~~~l~~ 83 (287)
++|+-||=+++.+.++=..-+---+-+.|+++..-.|++..++.-..+.|+.+|+++.. + ..-+.+.|.+
T Consensus 6 ~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~l~~ 80 (279)
T TIGR01452 6 IFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFSSALCAARLLRQ 80 (279)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEecHHHHHHHHHHh
Confidence 57888888887775554333333556789999888887755665566788999997652 1 1334455665
No 113
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=24.65 E-value=1.5e+02 Score=26.05 Aligned_cols=70 Identities=23% Similarity=0.122 Sum_probs=45.1
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHH-cCCCCC-----CCHHHHHHHHHh
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVID-----LDPEGVRRCVDE 83 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLea-LGi~~~-----~s~e~~~~~l~~ 83 (287)
++|+-||=+++.+.++-..-+-.-+-+.|+++....|.+--+..-..+.|.. +|+++. .|..-+.+.|.+
T Consensus 2 lfD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~~~~~~~l~~ 77 (236)
T TIGR01460 2 LFDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSGSVTKDLLRQ 77 (236)
T ss_pred EEeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHHHHHHHHHHH
Confidence 4788888888877655332233334556999999998876555556677777 787653 222345555654
No 114
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=24.65 E-value=70 Score=27.60 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=24.7
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
++=++|++|.|+ ||++..++...|++++.-|.
T Consensus 5 ~i~i~G~~G~GK-----st~a~~l~~~~~~~~~~~~D 36 (197)
T PRK12339 5 IHFIGGIPGVGK-----TSISGYIARHRAIDIVLSGD 36 (197)
T ss_pred EEEEECCCCCCH-----HHHHHHHHHhcCCeEEehhH
Confidence 455889999998 77888888888887765544
No 115
>PRK04940 hypothetical protein; Provisional
Probab=24.62 E-value=1.9e+02 Score=24.84 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=22.0
Q ss_pred ccCCCC-CCce---EEee--eChhhHHHHHHHHHHcCCCeEEEEecCC
Q 023127 120 MLNPAC-VPFA---VVGV--YNENLVLKMANALQRFGLKRALVVHSEG 161 (287)
Q Consensus 120 LlNP~~-~~~~---v~Gv--~h~~~~~~~~~~~~~lg~~~~lvv~GeG 161 (287)
|+||+- |... .+|. -+..+.+.+.+-++....++.+++-..|
T Consensus 87 LiNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL~~~~p~r~~vllq~g 134 (180)
T PRK04940 87 IFNPNLFPEENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRN 134 (180)
T ss_pred EECCCCChHHHHHHHhCCCcchhhhhHHHHHHhhhcCcccEEEEEeCC
Confidence 788854 3222 3342 1235555555566654455667666544
No 116
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=24.57 E-value=93 Score=28.72 Aligned_cols=33 Identities=9% Similarity=0.067 Sum_probs=23.3
Q ss_pred CCCCCCC-ccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 21 GGDGANT-VNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 21 ggdG~~t-~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
-|.+... +++..+..+ -...++|.++||+.+++
T Consensus 185 ~y~~~p~~Ld~~~L~~I-~~~v~vPLVlHGgSG~~ 218 (288)
T TIGR00167 185 VYKGEPKGLDFERLEEI-QKYVNLPLVLHGGSGIP 218 (288)
T ss_pred ccCCCCCccCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 5655444 788777666 45669999999996543
No 117
>PRK10853 putative reductase; Provisional
Probab=24.51 E-value=57 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeCC--ccchhhhhhHHHHhhhCCCChhHhhhh
Q 023127 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGP 119 (287)
Q Consensus 67 Gi~~~~s~e~~~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~Lg~Rt~~ntl~~ 119 (287)
|++-+.|--+|.+.|+++|+.|-+.. .--|.-..|..+=.++|+..++|+=+.
T Consensus 6 ~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~~ 60 (118)
T PRK10853 6 GIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRGT 60 (118)
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCCc
Confidence 67777788899999999999887764 345666677777778886655555443
No 118
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=24.26 E-value=2.7e+02 Score=20.75 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHhcCeEEEeCC
Q 023127 71 DLDPEGVRRCVDEAGIGFMMST 92 (287)
Q Consensus 71 ~~s~e~~~~~l~~~g~~fl~~~ 92 (287)
..+++++.+.+++.+..++...
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR 27 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIR 27 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcC
Confidence 3678899998887787777774
No 119
>PRK08118 topology modulation protein; Reviewed
Probab=24.06 E-value=68 Score=26.69 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=21.1
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEE
Q 023127 16 DIVGTGGDGANTVNISTGASILAAACGAKVA 46 (287)
Q Consensus 16 D~~gtggdG~~t~nis~~aa~llA~~G~~V~ 46 (287)
=|+|++|.|+ ||++..+....|+++.
T Consensus 5 ~I~G~~GsGK-----STlak~L~~~l~~~~~ 30 (167)
T PRK08118 5 ILIGSGGSGK-----STLARQLGEKLNIPVH 30 (167)
T ss_pred EEECCCCCCH-----HHHHHHHHHHhCCCce
Confidence 3789999888 6788888888888866
No 120
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=24.06 E-value=57 Score=32.11 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=28.9
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
++-||-+|+.| .+++.+-+|.++|.++.+=||=+.+
T Consensus 113 vaITGTNGKTT--TTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 113 VAITGTNGKTT--TTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred EEEECCCchHH--HHHHHHHHHHhcCCCceeccccCcc
Confidence 45578888885 4778889999999999999996643
No 121
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.62 E-value=3.3e+02 Score=20.56 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCeEEEeCCc-cchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHH-cCC
Q 023127 74 PEGVRRCVDEAGIGFMMSTK-YHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR-FGL 151 (287)
Q Consensus 74 ~e~~~~~l~~~g~~fl~~~~-~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~-lg~ 151 (287)
.++..+.+.+.+.-.+.... +.+.+.....+.+.+ +-.+| ....++|=.|+...+ .++++. .|+
T Consensus 40 ~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~----------k~~~p--~~~iv~GG~~~t~~~--~~~l~~~~~~ 105 (121)
T PF02310_consen 40 PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAI----------KERNP--NIPIVVGGPHATADP--EEILREYPGI 105 (121)
T ss_dssp HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHH----------HTTCT--TSEEEEEESSSGHHH--HHHHHHHHTS
T ss_pred HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHH----------HhcCC--CCEEEEECCchhcCh--HHHhccCcCc
Confidence 47777777766655555544 555555555554432 12222 124566666766554 334444 666
Q ss_pred CeEEEEecCCcc
Q 023127 152 KRALVVHSEGLD 163 (287)
Q Consensus 152 ~~~lvv~GeG~d 163 (287)
+ .++.|||.+
T Consensus 106 D--~vv~GegE~ 115 (121)
T PF02310_consen 106 D--YVVRGEGEE 115 (121)
T ss_dssp E--EEEEETTSS
T ss_pred c--eecCCChHH
Confidence 3 678888843
No 122
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=23.43 E-value=94 Score=29.03 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCCCccchHHHHHHHHhCCCcEEeecCCCCCC
Q 023127 24 GANTVNISTGASILAAACGAKVAKQGSRSSSS 55 (287)
Q Consensus 24 G~~t~nis~~aa~llA~~G~~V~kHG~~~~~~ 55 (287)
|...+|+-.+..+ -++.++|.++||+.+++.
T Consensus 187 ~~p~L~f~~L~~I-~~~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 187 GEPKLDFERLQEV-KRLTNIPLVLHGASAIPD 217 (307)
T ss_pred CCCccCHHHHHHH-HHHhCCCEEEeCCCCCch
Confidence 4346777777665 556699999999988775
No 123
>PRK07261 topology modulation protein; Provisional
Probab=23.40 E-value=78 Score=26.36 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=22.2
Q ss_pred eeeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023127 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (287)
Q Consensus 16 D~~gtggdG~~t~nis~~aa~llA~~G~~V~kH 48 (287)
=++|++|.|+ ||++..+....|++++..
T Consensus 4 ~i~G~~GsGK-----STla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 4 AIIGYSGSGK-----STLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEcCCCCCH-----HHHHHHHHHHhCCCeEec
Confidence 4789999998 678888777888887643
No 124
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=23.20 E-value=96 Score=28.56 Aligned_cols=33 Identities=9% Similarity=0.061 Sum_probs=24.0
Q ss_pred CCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 21 ggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
-|.+...+++-.+..+ -+..++|.++||+.+++
T Consensus 180 ~yk~~p~Ldf~~L~~I-~~~~~iPLVlHGgSG~~ 212 (282)
T TIGR01858 180 LYKKTPKLDFDRLAEI-REVVDVPLVLHGASDVP 212 (282)
T ss_pred CcCCCCccCHHHHHHH-HHHhCCCeEEecCCCCC
Confidence 5655447777776666 45669999999997764
No 125
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.11 E-value=62 Score=29.17 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=25.0
Q ss_pred cceeeCC-CCCCCCCccchHHHHHHHHhCCCcEEee
Q 023127 14 AVDIVGT-GGDGANTVNISTGASILAAACGAKVAKQ 48 (287)
Q Consensus 14 ~~D~~gt-ggdG~~t~nis~~aa~llA~~G~~V~kH 48 (287)
+|=++|+ ||.|+.| ++...|-.|++.|.+|+--
T Consensus 3 ~iai~s~kGGvG~TT--ltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTT--LTANLAWALARLGESVLAI 36 (243)
T ss_pred EEEEecCCCCCCHHH--HHHHHHHHHHHCCCcEEEE
Confidence 3445665 8888886 6667888899999999853
No 126
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=23.07 E-value=2e+02 Score=22.07 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=39.9
Q ss_pred hHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCC-------CH---HHHHHHHHhcCeEEEeC
Q 023127 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL-------DP---EGVRRCVDEAGIGFMMS 91 (287)
Q Consensus 31 s~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~-------s~---e~~~~~l~~~g~~fl~~ 91 (287)
....+-.++..|+++. +..|+++.|+..|+++.. +. ..+.+.+.+..+.|+-.
T Consensus 15 ~~~~a~~l~~~G~~i~--------aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn 77 (116)
T cd01423 15 LLPTAQKLSKLGYKLY--------ATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVIN 77 (116)
T ss_pred HHHHHHHHHHCCCEEE--------EccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEE
Confidence 5567777888999998 455799999999986542 11 56788888888888855
No 127
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=22.98 E-value=7.1e+02 Score=24.52 Aligned_cols=122 Identities=16% Similarity=0.145 Sum_probs=76.0
Q ss_pred hHHHHHHHHhCCCcEEeecCCCCCCc---CC-------------HHHHHHHcCCCCCCC-----HHHHHHHHHhcCeEEE
Q 023127 31 STGASILAAACGAKVAKQGSRSSSSA---CG-------------SADVLEALGVVIDLD-----PEGVRRCVDEAGIGFM 89 (287)
Q Consensus 31 s~~aa~llA~~G~~V~kHG~~~~~~~---~G-------------s~dvLeaLGi~~~~s-----~e~~~~~l~~~g~~fl 89 (287)
-..+|.-|++.|+.|..+++...... +| -.+.|++.|+.+... .-.+++.+++.-.+|+
T Consensus 135 Gl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~Dav~l 214 (457)
T COG0493 135 GLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEELLKEYDAVFL 214 (457)
T ss_pred HhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhhCEEEE
Confidence 45679999999999999998875431 33 356788888654322 1133444444455665
Q ss_pred eC---------------CccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeE
Q 023127 90 MS---------------TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRA 154 (287)
Q Consensus 90 ~~---------------~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~ 154 (287)
.. +..++++..|..++++... .... .+...+.+.+..|+|.-.-+..-. .....+|.+++
T Consensus 215 ~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~-~~~~--~~~~~~~gk~vvVIGgG~Ta~D~~--~t~~r~Ga~~v 289 (457)
T COG0493 215 ATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLG-DFAE--DRTPPAKGKRVVVIGGGDTAMDCA--GTALRLGAKSV 289 (457)
T ss_pred eccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhc-cccc--ccCCCCCCCeEEEECCCCCHHHHH--HHHhhcCCeEE
Confidence 33 3667888888888754431 1111 122233346788999887655433 56677888877
Q ss_pred EEE
Q 023127 155 LVV 157 (287)
Q Consensus 155 lvv 157 (287)
.++
T Consensus 290 ~~~ 292 (457)
T COG0493 290 TCF 292 (457)
T ss_pred EEe
Confidence 777
No 128
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=22.82 E-value=59 Score=29.08 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=22.1
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG 49 (287)
.+.||.|+.| ++.-.|..+|+.|.+|+.--
T Consensus 110 s~~~g~Gktt--~a~nLA~~la~~g~~VllID 139 (274)
T TIGR03029 110 SAKSGEGCSY--IAANLAIVFSQLGEKTLLID 139 (274)
T ss_pred CCCCCCCHHH--HHHHHHHHHHhcCCeEEEEe
Confidence 4558888876 45556677889999998653
No 129
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=22.59 E-value=96 Score=24.24 Aligned_cols=30 Identities=37% Similarity=0.499 Sum_probs=24.4
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG 49 (287)
|=++|++|.|+ ||++..+...+|++++..+
T Consensus 2 I~i~G~~GsGK-----st~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGK-----STVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCH-----HHHHHHHHHHhCCceeccc
Confidence 44789999888 6778888888999998776
No 130
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=22.58 E-value=1.8e+02 Score=27.32 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=19.8
Q ss_pred CccchHHHHHHHHhC-CCcEEeecCCCCCC
Q 023127 27 TVNISTGASILAAAC-GAKVAKQGSRSSSS 55 (287)
Q Consensus 27 t~nis~~aa~llA~~-G~~V~kHG~~~~~~ 55 (287)
.+++-.+.. +-++. ++|.++||+.+.+.
T Consensus 202 ~Ld~d~L~~-I~~~~~~vPLVLHGgSg~~~ 230 (321)
T PRK07084 202 PLRFDILEE-IEKRIPGFPIVLHGSSSVPQ 230 (321)
T ss_pred ccCHHHHHH-HHHhcCCCCEEEeCCCCCcH
Confidence 566666554 44555 79999999987653
No 131
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=22.36 E-value=59 Score=28.16 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=27.7
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~ 52 (287)
+.|.||.|+.+ ++...|..+|+.|.+|..-..+-
T Consensus 4 ~~g~~g~Gkt~--~~~~la~~~a~~g~~~~l~~~d~ 37 (217)
T cd02035 4 FTGKGGVGKTT--IAAATAVRLAEEGKKVLLVSTDP 37 (217)
T ss_pred EeCCCCchHHH--HHHHHHHHHHHCCCcEEEEECCC
Confidence 57889999987 47778888999999999876543
No 132
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=22.34 E-value=73 Score=29.36 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=23.5
Q ss_pred eeCCCCCC--CCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 17 IVGTGGDG--ANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 17 ~~gtggdG--~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
.|| .|.+ ...+++-.+..+--+..++|.++||+.+++
T Consensus 179 ~HG-~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~ 217 (287)
T PF01116_consen 179 AHG-MYKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSGLP 217 (287)
T ss_dssp BSS-SBSSSSSTC--HHHHHHHHHHHHTSEEEESSCTTS-
T ss_pred ccc-ccCCCCCcccCHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 344 6666 447777777666544438999999996643
No 133
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=22.26 E-value=1.4e+02 Score=20.69 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=27.9
Q ss_pred CCHHHHHHHcCCCCC--CCHHHHHHHHHhcCeEEEeCCc
Q 023127 57 CGSADVLEALGVVID--LDPEGVRRCVDEAGIGFMMSTK 93 (287)
Q Consensus 57 ~Gs~dvLeaLGi~~~--~s~e~~~~~l~~~g~~fl~~~~ 93 (287)
.+..++++.|+.+.. ++.+++++.+++.|--=+..+.
T Consensus 4 ~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~ 42 (69)
T PF00690_consen 4 LSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPK 42 (69)
T ss_dssp SSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTT
T ss_pred CCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccc
Confidence 457899999974443 8899999999999876554433
No 134
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=21.54 E-value=79 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhcCeEEEeCCccchhhhh
Q 023127 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMKF 100 (287)
Q Consensus 72 ~s~e~~~~~l~~~g~~fl~~~~~~P~l~~ 100 (287)
.+.+.....|++.||.|++.+.+.|.-..
T Consensus 31 ~~k~~l~~~l~~~gi~Y~~~~~Lg~~~~~ 59 (122)
T PF04343_consen 31 FNKEDLASFLEEAGIEYVWLPELGPSREL 59 (122)
T ss_pred CCHHHHHHHHHHCCceEeechhhcCcccc
Confidence 46788889999999999999999887543
No 135
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=21.53 E-value=72 Score=18.11 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=10.8
Q ss_pred hHHHHHHHHhCCCc
Q 023127 31 STGASILAAACGAK 44 (287)
Q Consensus 31 s~~aa~llA~~G~~ 44 (287)
..++++.+++||.+
T Consensus 5 ~~~~~~~LsgCG~K 18 (24)
T PF13627_consen 5 LLALALALSGCGQK 18 (24)
T ss_pred HHHHHHHHHhcccC
Confidence 45678888999876
No 136
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=21.41 E-value=1.6e+02 Score=27.37 Aligned_cols=116 Identities=24% Similarity=0.261 Sum_probs=59.0
Q ss_pred eCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCC------HHHHHHHc---------CCCCCCCHHHHHHHHH
Q 023127 18 VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEAL---------GVVIDLDPEGVRRCVD 82 (287)
Q Consensus 18 ~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G------s~dvLeaL---------Gi~~~~s~e~~~~~l~ 82 (287)
+..|.+|..| -...+++...+|++|+-.|+=+==++.+ |+|+-|-= |++--++.....+.|+
T Consensus 89 ~a~~~~GaTT---VsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL~rtpv~VV~aG~KsILDi~~TLE~LE 165 (293)
T PF04227_consen 89 LAKGLSGATT---VSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTELARTPVAVVCAGAKSILDIPKTLEYLE 165 (293)
T ss_dssp HHHT--EEE----HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHHTTS-EEEEESBB-TTS-HHHHHHHHH
T ss_pred HhCCCccHhH---HHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHHhcCCceEEEccCcchhchHHHHHHhh
Confidence 4456777665 3445677778899999988744222221 78876632 4455578889999999
Q ss_pred hcCeEEEeC-CccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 83 EAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 83 ~~g~~fl~~-~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
..|+..+.. .+.+|+++.- .-|+ ..++ -+.+++-...+..+-..+|.+..++|-
T Consensus 166 T~GV~Vvgy~t~~fPaFy~~-----~Sg~--------------~~~~---~~d~~~e~A~~~~~~~~lgl~~g~lva 220 (293)
T PF04227_consen 166 TQGVPVVGYGTDEFPAFYTR-----SSGF--------------KSPY---RVDSPEEAARIIRAHWQLGLPSGVLVA 220 (293)
T ss_dssp HTT--EEEES-SB--BTTBS-------S---------------B------EE-SHHHHHHHHHHHHHTT--SEEEEE
T ss_pred cCCeEEEEecCCCCCeeecc-----CCCC--------------CCCc---ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 999988755 6777876421 1111 1112 355666666666677788888777774
No 137
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=20.82 E-value=2.2e+02 Score=25.01 Aligned_cols=81 Identities=10% Similarity=0.130 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCC-CC---CC-ceEEeeeChhhHHHHHHHHHH
Q 023127 74 PEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-AC---VP-FAVVGVYNENLVLKMANALQR 148 (287)
Q Consensus 74 ~e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP-~~---~~-~~v~Gv~h~~~~~~~~~~~~~ 148 (287)
++.++. +.+.|+..+.-...--++.++..+|+ .+ ....++++|+..+ .. .. .....|.+.+..+.+.+.+..
T Consensus 40 ~~~i~~-l~~~G~~~fg~~~~~Ea~~k~~~lr~-~~-~~~~~~ig~~q~~~~~~~~~~~~l~~~vds~~~~~~l~~~a~~ 116 (229)
T TIGR00044 40 ASAIQI-AYDAGQRAFGENYVQELVEKIKLLED-LG-KLEWHFIGPLQSNKDRLVVENFDWVHTIDSLKIAKKLNEQREK 116 (229)
T ss_pred HHHHHH-HHHcCCccccEEcHHHHHHHHHHhcc-cC-CceEEEECCCcchHHHHHhhhcCEEEEECCHHHHHHHHHHHHh
Confidence 666666 66777776666666555565555663 45 5667888887444 21 23 334788999999999998888
Q ss_pred cCCCeEEEE
Q 023127 149 FGLKRALVV 157 (287)
Q Consensus 149 lg~~~~lvv 157 (287)
.|..--+.+
T Consensus 117 ~~~~~~V~l 125 (229)
T TIGR00044 117 LQPPLNVLL 125 (229)
T ss_pred cCCCceEEE
Confidence 775433344
No 138
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=20.82 E-value=66 Score=29.07 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=22.3
Q ss_pred ceeeCCCCCCCCCccchHH-HHHHHHhCCCcEEee
Q 023127 15 VDIVGTGGDGANTVNISTG-ASILAAACGAKVAKQ 48 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~-aa~llA~~G~~V~kH 48 (287)
|=|||-||.|+.| ++++ +.-+++..|+.|+--
T Consensus 3 IaI~GKGG~GKTt--iaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 3 IAITGKGGVGKTT--IAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred EEEecCCCccHHH--HHHHHHHHHHhcCCceEEEE
Confidence 4589999999976 4555 444556666888853
No 139
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=20.73 E-value=71 Score=24.53 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeCCccc--hhhhhhHHHHhhhC--CCChhHhhhhccCCCCCCceEEeeeChhhHHHH
Q 023127 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKYH--PAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (287)
Q Consensus 67 Gi~~~~s~e~~~~~l~~~g~~fl~~~~~~--P~l~~l~~lR~~Lg--~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (287)
|++-+.+-.++.+.|+++|+.|-+-...- |.-..|..+=+.+| ++.++|+=++...-.. ....-.....++.+.|
T Consensus 2 ~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~-~~~~~~~s~~e~i~~l 80 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG-KLKKDDLSDEELIELL 80 (110)
T ss_dssp E-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT-HHHCTTSBHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh-hhhhhhhhhHHHHHHH
Confidence 44556677899999999999888765443 67778888888888 5666665444333322 1111123344454554
Q ss_pred HHHHHHcCCCeEEEEec
Q 023127 143 ANALQRFGLKRALVVHS 159 (287)
Q Consensus 143 ~~~~~~lg~~~~lvv~G 159 (287)
.+=-..+. |-+++.|
T Consensus 81 ~~~p~Lik--RPIi~~~ 95 (110)
T PF03960_consen 81 LENPKLIK--RPIIVDG 95 (110)
T ss_dssp HHSGGGB---SSEEEET
T ss_pred HhChhhee--CCEEEEC
Confidence 44333443 3466654
No 140
>COG0033 Pgm Phosphoglucomutase [Carbohydrate transport and metabolism]
Probab=20.73 E-value=1e+02 Score=30.36 Aligned_cols=43 Identities=28% Similarity=0.284 Sum_probs=35.5
Q ss_pred CCCCCC-CccchHHHHHHHHhCCCcEEeecCCCCCCcCC-HHHHH
Q 023127 21 GGDGAN-TVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVL 63 (287)
Q Consensus 21 ggdG~~-t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G-s~dvL 63 (287)
|+||+- +.++.--+.-++|+.|+.+++.|..+.+|.-. |.-++
T Consensus 60 G~D~~~~se~a~~~~lev~aANgv~~iv~~~~g~~~TPAaSh~I~ 104 (524)
T COG0033 60 GGDTHALSEPAIQSALEVLAANGVEVIVQGQGGFTPTPAASHAIL 104 (524)
T ss_pred CCCcccccHHHHHHHHHHHHhcCceEEEecCCCccCchHHHHHHH
Confidence 789887 77777778889999999999999999888644 55555
No 141
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=20.42 E-value=57 Score=29.57 Aligned_cols=110 Identities=17% Similarity=0.299 Sum_probs=67.8
Q ss_pred CCCCCHHHHHHHHHhcCeEEEeC---C-ccchhhhhhHHHHhhhCCC--------ChhHhhhhccCCCCCCceEEeeeCh
Q 023127 69 VIDLDPEGVRRCVDEAGIGFMMS---T-KYHPAMKFVRPVRKKLKVK--------TVFNILGPMLNPACVPFAVVGVYNE 136 (287)
Q Consensus 69 ~~~~s~e~~~~~l~~~g~~fl~~---~-~~~P~l~~l~~lR~~Lg~R--------t~~ntl~~LlNP~~~~~~v~Gv~h~ 136 (287)
....++.+..+.+++.|.+-+.. + .|.=.+..|..+|+...++ ...-+.+--..-+.+=..+..+..+
T Consensus 65 ~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~ 144 (254)
T PF00218_consen 65 REDFDPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSD 144 (254)
T ss_dssp BSS-SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGH
T ss_pred CccCCHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCH
Confidence 44568999999999998877765 4 4555688999999877653 2222222222333344556778888
Q ss_pred hhHHHHHHHHHHcCCCeEEEEec-CCccccccCCceeEEEEeCC
Q 023127 137 NLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQE 179 (287)
Q Consensus 137 ~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g 179 (287)
..++.+.+.+..+|.+..+=||. +-.+.+ ......+..+++-
T Consensus 145 ~~l~~l~~~a~~lGle~lVEVh~~~El~~a-l~~~a~iiGINnR 187 (254)
T PF00218_consen 145 DQLEELLELAHSLGLEALVEVHNEEELERA-LEAGADIIGINNR 187 (254)
T ss_dssp HHHHHHHHHHHHTT-EEEEEESSHHHHHHH-HHTT-SEEEEESB
T ss_pred HHHHHHHHHHHHcCCCeEEEECCHHHHHHH-HHcCCCEEEEeCc
Confidence 88888899999999976666764 222222 2234456666653
No 142
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.35 E-value=7.3e+02 Score=23.82 Aligned_cols=126 Identities=20% Similarity=0.226 Sum_probs=65.9
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCC-HHHHHHHcCCCCCC----CHHHHHHHHHhcCeEEEeC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDL----DPEGVRRCVDEAGIGFMMS 91 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G-s~dvLeaLGi~~~~----s~e~~~~~l~~~g~~fl~~ 91 (287)
++|.|+-|. | +|.+|+..|+.|..--.+.. +..- ..+.|+.+|+.+.. .++.....+++..+.++ .
T Consensus 5 viG~G~sG~-----s--~a~~l~~~G~~V~~~D~~~~-~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~-s 75 (459)
T PRK02705 5 VIGLGRSGI-----A--AARLLKAQGWEVVVSDRNDS-PELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVV-S 75 (459)
T ss_pred EEccCHHHH-----H--HHHHHHHCCCEEEEECCCCc-hhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEE-C
Confidence 678777554 3 58889999999874332222 2221 23568888986642 23333345666666655 3
Q ss_pred CccchhhhhhHHHHhhhCCC--ChhHhhhhccCCCCCCceEEeeeChhhHH-HHHHHHHHcCCCe
Q 023127 92 TKYHPAMKFVRPVRKKLKVK--TVFNILGPMLNPACVPFAVVGVYNENLVL-KMANALQRFGLKR 153 (287)
Q Consensus 92 ~~~~P~l~~l~~lR~~Lg~R--t~~ntl~~LlNP~~~~~~v~Gv~h~~~~~-~~~~~~~~lg~~~ 153 (287)
|...|.-..+...| +.|++ +-.-.+...+++ ....-|+|-.-|.... +++.+++..|.+.
T Consensus 76 ~gi~~~~~~~~~a~-~~~i~v~~~~~~~~~~~~~-~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~ 138 (459)
T PRK02705 76 PGIPWDHPTLVELR-ERGIEVIGEIELAWRALKH-IPWVGITGTNGKTTVTALLAHILQAAGLNA 138 (459)
T ss_pred CCCCCCCHHHHHHH-HcCCcEEEhHHHHHHhhcC-CCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence 33332222233333 34443 222222333332 1234566666655544 4577888888653
No 143
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.32 E-value=4.6e+02 Score=21.09 Aligned_cols=88 Identities=14% Similarity=0.068 Sum_probs=52.9
Q ss_pred HHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHHHHhcCeEEEeC----CccchhhhhhHHHHhhh
Q 023127 33 GASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMS----TKYHPAMKFVRPVRKKL 108 (287)
Q Consensus 33 ~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~g~~fl~~----~~~~P~l~~l~~lR~~L 108 (287)
+++.+|-.+|+.|.--|. +.++|++.+...+.+.-++.. ....+.++++...-++-
T Consensus 18 iv~~~L~~~GfeVidLG~--------------------~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~ 77 (128)
T cd02072 18 ILDHAFTEAGFNVVNLGV--------------------LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEA 77 (128)
T ss_pred HHHHHHHHCCCEEEECCC--------------------CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHC
Confidence 556677778888875443 457888888888777666655 34446667777766666
Q ss_pred CCCChhHhhhhccCCCCCCceEEeee--ChhhHHHHHHHHHHcCCCe
Q 023127 109 KVKTVFNILGPMLNPACVPFAVVGVY--NENLVLKMANALQRFGLKR 153 (287)
Q Consensus 109 g~Rt~~ntl~~LlNP~~~~~~v~Gv~--h~~~~~~~~~~~~~lg~~~ 153 (287)
|+|.+.= .+=|.. .++-.+...+.++.+|+++
T Consensus 78 gl~~v~v-------------ivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 78 GLKDILL-------------YVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CCCCCeE-------------EEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 7654222 222331 2233334456677888853
No 144
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=20.30 E-value=1.3e+02 Score=27.70 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=22.9
Q ss_pred CCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC
Q 023127 21 GGDGANTVNISTGASILAAACGAKVAKQGSRSSS 54 (287)
Q Consensus 21 ggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~ 54 (287)
-|.+...+++-.+..+ -+..++|.++||+.+++
T Consensus 182 ~Y~~~p~Ldfd~l~~I-~~~~~vPLVLHGgSG~~ 214 (286)
T PRK12738 182 LYSKTPKIDFQRLAEI-REVVDVPLVLHGASDVP 214 (286)
T ss_pred CCCCCCcCCHHHHHHH-HHHhCCCEEEeCCCCCC
Confidence 4555446777666555 45569999999997655
No 145
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.25 E-value=3.6e+02 Score=26.01 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHH--cCCCCCCCHHHHHHHHHhcCeEEE
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA--LGVVIDLDPEGVRRCVDEAGIGFM 89 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLea--LGi~~~~s~e~~~~~l~~~g~~fl 89 (287)
+..+=++|-|+-|. | +|.+|.+.|+.|. |++.-...-.... |+. +|+.+...... .+.+++..+.++
T Consensus 6 ~~~~~v~G~G~sG~-----s--~a~~L~~~G~~v~--~~D~~~~~~~~~~-l~~~~~g~~~~~~~~~-~~~~~~~d~vV~ 74 (448)
T PRK03803 6 DGLHIVVGLGKTGL-----S--VVRFLARQGIPFA--VMDSREQPPGLDT-LAREFPDVELRCGGFD-CELLVQASEIII 74 (448)
T ss_pred CCeEEEEeecHhHH-----H--HHHHHHhCCCeEE--EEeCCCCchhHHH-HHhhcCCcEEEeCCCC-hHHhcCCCEEEE
Q ss_pred eC--CccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHH-HHHHHHcCCCeEE
Q 023127 90 MS--TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKM-ANALQRFGLKRAL 155 (287)
Q Consensus 90 ~~--~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~-~~~~~~lg~~~~l 155 (287)
.. |.-+|.+.... ++.+-+.+=...+..++ -.+...|+|-.-|.....| ..+|+..|....+
T Consensus 75 sp~i~~~~p~~~~a~--~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ 139 (448)
T PRK03803 75 SPGLALDTPALRAAA--AMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAV 139 (448)
T ss_pred CCCCCCCCHHHHHHH--HCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEE
No 146
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=20.23 E-value=3.4e+02 Score=23.86 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=26.9
Q ss_pred ceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-CCcccc
Q 023127 128 FAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEM 165 (287)
Q Consensus 128 ~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~dE~ 165 (287)
..++|||..+-.+.+.+++..++. .++-+|| |-.+++
T Consensus 53 ~~~VgVf~n~~~~~i~~i~~~~~l-d~VQlHG~e~~~~~ 90 (208)
T COG0135 53 VKVVGVFVNESIEEILEIAEELGL-DAVQLHGDEDPEYI 90 (208)
T ss_pred CCEEEEECCCCHHHHHHHHHhcCC-CEEEECCCCCHHHH
Confidence 347788888888888888888876 5777888 554333
No 147
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=20.12 E-value=70 Score=24.61 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHhcCeEEEeCC--ccchhhhhhHHHHhhhCCCChhHhhhhcc
Q 023127 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKTVFNILGPML 121 (287)
Q Consensus 67 Gi~~~~s~e~~~~~l~~~g~~fl~~~--~~~P~l~~l~~lR~~Lg~Rt~~ntl~~Ll 121 (287)
+.+-+.+--.+.+.|+++|+.|-... .--|.-..|..+-+.+|++.++|+=++..
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~~y 61 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGTTW 61 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCchHH
Confidence 45556666789999999988877664 44666777888878888777777655433
Done!