Query 023127
Match_columns 287
No_of_seqs 139 out of 1147
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 16:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkm_A Anthranilate phosphorib 100.0 2.1E-75 7.2E-80 546.4 28.7 279 1-279 65-346 (346)
2 1khd_A Anthranilate phosphorib 100.0 6.7E-75 2.3E-79 541.8 29.5 270 1-271 72-344 (345)
3 1vqu_A Anthranilate phosphorib 100.0 3.1E-74 1.1E-78 542.2 33.3 273 1-273 86-373 (374)
4 2elc_A Trp D, anthranilate pho 100.0 1.8E-74 6E-79 536.1 29.9 268 1-273 59-328 (329)
5 3r88_A Anthranilate phosphorib 100.0 3.5E-73 1.2E-77 535.5 30.8 274 1-275 85-369 (377)
6 1o17_A Anthranilate PRT, anthr 100.0 3E-73 1E-77 530.7 28.0 271 1-275 62-333 (345)
7 3h5q_A PYNP, pyrimidine-nucleo 100.0 7.9E-51 2.7E-55 387.3 22.1 236 1-275 65-322 (436)
8 2dsj_A Pyrimidine-nucleoside ( 100.0 1E-49 3.5E-54 378.3 20.1 234 1-275 62-312 (423)
9 1brw_A PYNP, protein (pyrimidi 100.0 8.7E-49 3E-53 374.0 23.2 232 1-275 62-319 (433)
10 1uou_A Thymidine phosphorylase 100.0 1.7E-48 5.9E-53 374.6 24.2 232 1-275 89-347 (474)
11 2tpt_A Thymidine phosphorylase 100.0 4.8E-49 1.6E-53 376.4 15.0 243 1-275 63-323 (440)
12 4ex8_A ALNA; alpha/beta/alpha- 63.8 5.1 0.00017 36.0 3.5 123 17-149 105-261 (316)
13 4gim_A Pseudouridine-5'-phosph 58.2 16 0.00054 33.1 5.7 123 17-149 125-282 (335)
14 1vkm_A Conserved hypothetical 40.0 93 0.0032 27.6 7.6 116 17-158 98-226 (297)
15 3cio_A ETK, tyrosine-protein k 39.3 25 0.00085 30.9 4.0 74 12-92 104-188 (299)
16 3lw7_A Adenylate kinase relate 38.8 74 0.0025 24.0 6.4 27 15-47 4-30 (179)
17 3bfv_A CAPA1, CAPB2, membrane 37.0 28 0.00095 30.1 3.9 75 12-93 82-167 (271)
18 3end_A Light-independent proto 35.8 14 0.00049 32.1 1.8 76 13-91 42-127 (307)
19 3epr_A Hydrolase, haloacid deh 35.6 19 0.00063 30.4 2.4 58 14-71 9-66 (264)
20 1o51_A Hypothetical protein TM 35.4 55 0.0019 24.7 4.8 29 135-163 28-57 (114)
21 2woo_A ATPase GET3; tail-ancho 35.3 15 0.00051 32.8 1.8 30 17-48 24-53 (329)
22 3qgm_A P-nitrophenyl phosphata 35.3 26 0.00091 29.2 3.4 58 14-71 12-69 (268)
23 1vli_A Spore coat polysacchari 34.3 1.3E+02 0.0046 27.6 8.1 143 17-162 32-197 (385)
24 2l48_A N-acetylmuramoyl-L-alan 34.3 77 0.0026 22.8 5.1 37 126-162 19-55 (85)
25 3iqw_A Tail-anchored protein t 33.6 22 0.00076 31.9 2.7 47 13-64 17-63 (334)
26 3fwy_A Light-independent proto 33.1 16 0.00055 32.6 1.7 37 13-51 49-85 (314)
27 3zq6_A Putative arsenical pump 31.6 18 0.0006 32.2 1.7 36 15-52 17-52 (324)
28 1ihu_A Arsenical pump-driving 31.6 19 0.00063 34.8 2.0 38 12-51 8-45 (589)
29 3ug7_A Arsenical pump-driving 31.1 19 0.00065 32.4 1.8 33 17-51 31-63 (349)
30 3fkq_A NTRC-like two-domain pr 30.8 38 0.0013 30.6 3.8 38 12-51 143-181 (373)
31 3kjh_A CO dehydrogenase/acetyl 30.2 12 0.00041 30.9 0.3 33 17-51 5-37 (254)
32 1byi_A Dethiobiotin synthase; 29.5 21 0.00072 29.1 1.7 29 17-47 6-35 (224)
33 2px0_A Flagellar biosynthesis 28.8 2.8E+02 0.0094 24.0 9.1 83 12-98 105-197 (296)
34 1cp2_A CP2, nitrogenase iron p 28.2 23 0.00078 29.9 1.7 32 17-50 6-37 (269)
35 3gtx_A Organophosphorus hydrol 27.3 1.5E+02 0.0051 26.4 7.1 68 14-83 157-236 (339)
36 2dcl_A Hypothetical UPF0166 pr 26.8 69 0.0024 24.7 4.1 30 134-163 23-53 (127)
37 4a7p_A UDP-glucose dehydrogena 26.7 3.8E+02 0.013 24.8 11.5 135 15-166 11-165 (446)
38 2woj_A ATPase GET3; tail-ancho 26.6 23 0.00079 32.0 1.6 34 17-52 23-58 (354)
39 3ovg_A Amidohydrolase; structu 26.5 57 0.0019 29.7 4.2 71 13-85 152-234 (363)
40 3kc2_A Uncharacterized protein 26.0 50 0.0017 29.8 3.7 59 13-71 16-75 (352)
41 3io3_A DEHA2D07832P; chaperone 25.7 38 0.0013 30.5 2.9 46 13-63 19-66 (348)
42 2gdt_A Leader protein; P65 hom 25.4 35 0.0012 25.6 2.0 22 239-260 18-39 (116)
43 2ho4_A Haloacid dehalogenase-l 25.1 87 0.003 25.4 4.9 58 14-71 11-68 (259)
44 1zjj_A Hypothetical protein PH 25.0 44 0.0015 28.0 3.0 57 14-70 5-61 (263)
45 2afh_E Nitrogenase iron protei 24.1 30 0.001 29.7 1.7 31 17-49 7-37 (289)
46 2ej7_A HCG3 gene; HCG3 protein 22.9 55 0.0019 22.5 2.7 29 56-84 5-33 (82)
47 4dzz_A Plasmid partitioning pr 22.4 33 0.0011 27.3 1.6 31 19-51 9-39 (206)
48 1yv9_A Hydrolase, haloacid deh 21.8 89 0.003 25.8 4.3 57 14-70 9-66 (264)
49 3pdw_A Uncharacterized hydrola 21.7 40 0.0014 28.1 2.0 58 14-71 10-67 (266)
50 3pf6_A Hypothetical protein PP 21.5 66 0.0023 21.0 2.5 34 242-275 19-52 (62)
51 3pnz_A Phosphotriesterase fami 21.1 1.6E+02 0.0054 26.2 6.0 68 14-83 152-231 (330)
52 1vjr_A 4-nitrophenylphosphatas 21.0 76 0.0026 26.3 3.7 58 13-70 20-77 (271)
53 1j3m_A The conserved hypotheti 20.8 65 0.0022 24.3 2.9 62 70-150 12-73 (129)
54 1j8m_F SRP54, signal recogniti 20.3 3.6E+02 0.012 23.3 8.1 81 12-96 98-193 (297)
No 1
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.1e-75 Score=546.36 Aligned_cols=279 Identities=43% Similarity=0.653 Sum_probs=244.8
Q ss_pred CccccccccCC--CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHH
Q 023127 1 MIKYATKVEGL--GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (287)
Q Consensus 1 ~~~~~~~~~~~--~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~ 78 (287)
|++++.+++.+ ++++|+|||||||++||||||++|+++|++|+||+|||||+++|++||+|+||+||+++++++++++
T Consensus 65 m~~~~~~v~~~~~~~~vD~~gTGGdg~~t~niSt~~a~v~Aa~G~~V~khG~r~~ss~~GsaD~LeaLG~~~~ls~~~~~ 144 (346)
T 4hkm_A 65 MREFSRRVEVTDRRHMVDIVGTGGDGSHTFNISTCAMFVAAAGGAKVAKHGNRSVSSKSGSADALEALGAVIELQPEQVA 144 (346)
T ss_dssp HHHHSCCCCCSCCTTEEEEECC------CCCHHHHHHHHHHHTTCEEEEEC---------CHHHHHTTTCCCCCCHHHHH
T ss_pred HHHhCCCCCCCCCccceeecCCCCCCccccCcHHHHHHHHHhcCCCeeecCCCCCCCCcCHHHHHHHcCCCcccCHHHHH
Confidence 56777777653 5689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
+++++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++++|||||+|.++|+++++.+|.++++|||
T Consensus 145 ~~l~~~g~~fl~a~~~~Pa~k~l~~~R~~lg~rT~fn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~a~vv~ 224 (346)
T 4hkm_A 145 ASLAQTGIGFMYAPVHHPAMKVVAPVRREMGVRTIFNILGPLTNPAGSPNILMGVFHPDLVGIQARVLQELGAERALVVW 224 (346)
T ss_dssp HHHHHHSEEEECHHHHCGGGGGTHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSTHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHhcCcchhchhhhChhHHHHhhheeccCCCchhhhcccccCCCCCcceEeeccCHHHhHHHHHHHHHcCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Q 023127 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALL 237 (287)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~d~v~~naa~~L~ 237 (287)
| ||+||+++.++|.|+++++|++.++.++|+|||++..+.+++.+++++++++.++++|+|+.++++|+|++|||++||
T Consensus 225 g~~G~dEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~~~~g~~~e~a~~~~~vl~g~~~~~~d~v~lnaa~~L~ 304 (346)
T 4hkm_A 225 GRDGMDELSLGAGTLVGELRDGQVHEYEVHPEDFGIAMSASRNLKVADAAESRAMLLQVLDNVPGPALDIVALNAGAALY 304 (346)
T ss_dssp ETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCC---------CCHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred cCCCchhhhhccCceEEEEeCCceeEecCCHHHcCCccCcccccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999999999999999999888888889999999999999999998999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhhhcc
Q 023127 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKICLCRG 279 (287)
Q Consensus 238 ~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~~~~~ 279 (287)
++|+++|++||+++|+++|+||+|+++|++|++++++.+..|
T Consensus 305 ~~g~a~sl~eg~~~A~~~l~sG~A~~~l~~~i~~s~~~~a~G 346 (346)
T 4hkm_A 305 VAGVADSIADGIVRARQVLADGSARACLDAYVAFTQQATAQG 346 (346)
T ss_dssp HTTSSSSHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHTC--
T ss_pred HcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999876554
No 2
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A
Probab=100.00 E-value=6.7e-75 Score=541.77 Aligned_cols=270 Identities=39% Similarity=0.661 Sum_probs=252.1
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCC-cCCHHHHHHHcCCCCCCCHHHHH
Q 023127 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSS-ACGSADVLEALGVVIDLDPEGVR 78 (287)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~-~~Gs~dvLeaLGi~~~~s~e~~~ 78 (287)
|++++.+++.+ ++++|+|||||||++||||||++|+++|++|+||+|||||+++| ++||+|+||+||+++++++++++
T Consensus 72 m~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VakHGnr~~ss~~~GsaDvLeaLGv~~~~~~~~~~ 151 (345)
T 1khd_A 72 LLADAQPFPRPDYDFADIVGTGGDGTNSINISTASAFVAASCGAKVAKHGNRSVCQPLAGSCDLLQAFGIRLDMSAEDSR 151 (345)
T ss_dssp HHHTSCCCCCCSSCCEEEEECCCCSSCBCCCHHHHHHHHHHHTCCEEEEECC---------CHHHHHTTCCTTCCHHHHH
T ss_pred HHHhCCcCCCCCCCeeeecCCCCCCCCccchHHHHHHHHHhCCCcEEEeCCCCCCCCcccHHHHHHhCCCCCCCCHHHHH
Confidence 56777777553 36899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 79 ~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
++|++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||+
T Consensus 152 ~~l~~~gi~fl~a~~~hPa~k~l~~~R~~Lg~rTvfn~lgpL~nPa~~~~~v~GV~~~~~~~~~a~~l~~lG~~~a~vv~ 231 (345)
T 1khd_A 152 QALDDLNVCFLFAPQYHTGFRHAMPVRQQLKTRTIFNVLGPLINPARPPKALIGVYSPELVLPIAQALKVLGYKNAAVVH 231 (345)
T ss_dssp HHHHHHSEEEEEHHHHCGGGGGGHHHHHHHCSCCTHHHHGGGCCTTCCSEEEEECSSGGGHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHCCEEEEehhhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCcCCCeEEEeecCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHH
Q 023127 159 SEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG-AIADALILNAAAALL 237 (287)
Q Consensus 159 GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~-~~~d~v~~naa~~L~ 237 (287)
|+|+||+++.++|+|+++++|+++++.++|++||++..+.+++.++++++|+++++++|+|+.+ +++|+|++|||++||
T Consensus 232 GdG~dEis~~~~t~v~~~~~g~i~~~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~ 311 (345)
T 1khd_A 232 GGGMDEVAIHTPTQVAELNNGEIESYQLSPQDFGLQSYSLNALQGGTPEENRDILARLLQGKGDAAHARQVAANVALLLK 311 (345)
T ss_dssp ETTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCBCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCcceecCCCceEEEEEeCCEEEEEEECHHHcCCCcCCccccCCCCHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888999999999999999999999965 899999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHH
Q 023127 238 VSCKVNTLAEGVALAREIQLSGKALNTLDLWIEV 271 (287)
Q Consensus 238 ~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~ 271 (287)
++|+ +|++||+++|+++|+||+|+++|++|++.
T Consensus 312 ~~g~-~~~~eg~~~A~~~i~sG~A~~~l~~~~~a 344 (345)
T 1khd_A 312 LFGQ-DNLRHNAQLALETIRSGTAFERVTALAAR 344 (345)
T ss_dssp TTTC-CCHHHHHHHHHHHHHHTHHHHHHHHHHTC
T ss_pred HcCC-CCHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence 9999 99999999999999999999999999863
No 3
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP}
Probab=100.00 E-value=3.1e-74 Score=542.17 Aligned_cols=273 Identities=38% Similarity=0.565 Sum_probs=255.2
Q ss_pred Cccccccc--------cCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCC
Q 023127 1 MIKYATKV--------EGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVV 69 (287)
Q Consensus 1 ~~~~~~~~--------~~~---~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~ 69 (287)
|++++.++ +.+ ++++|+|||||||.+||||||++|+++|++|+||+|||||+++|++||+|+||+||++
T Consensus 86 m~~~~~~~~~~~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~ 165 (374)
T 1vqu_A 86 LQSQSKMGTGENYSQLPITNSPFSIIDTCGTGGDGSSTFNISTAVAFVAAAYGVPVAKHGNRSASSLTGSADVLEALGVN 165 (374)
T ss_dssp HHTTCCC-----------CCSSSCCEEEEECC---CCBCCHHHHHHHHHHHTTCCEEEEEECC--CTTCHHHHHHHTTCC
T ss_pred HHHhCCccccccccccCccccCCCeeEEeCCCCCCCCccchHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCC
Confidence 45666666 332 3589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHc
Q 023127 70 IDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (287)
Q Consensus 70 ~~~s~e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (287)
+++++++++++|++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++|+++++.+
T Consensus 166 ~~~~~e~~~~~l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfNilgpL~NPa~~~~qv~GV~~~~~~~~~a~~l~~l 245 (374)
T 1vqu_A 166 LGASPEKVQAALQEVGITFLFAPGWHPALKAVATLRRTLRIRTVFNLLGPLVNPLRPTGQVVGLFTPKLLTTVAQALDNL 245 (374)
T ss_dssp TTCCHHHHHHHHHHTSEEEEEETTSSGGGGGGHHHHHHHCSCCHHHHHGGGCCTTCCSEEEEECSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCceEEeecCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEec-CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchHHH-H
Q 023127 150 GLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIAD-A 227 (287)
Q Consensus 150 g~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~d-~ 227 (287)
|.++++||+| +|+||+++.++|.|+++++|+++++.++|++||++..+++++.++++++|+++++++|+|+.++++| +
T Consensus 246 G~~~alVv~G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~~ 325 (374)
T 1vqu_A 246 GKQKAIVLHGRERLDEAGLGDLTDLAVLSDGELQLTTINPQEVGVTPAPIGALRGGDVQENAEILKAVLQGKGTQAQQDA 325 (374)
T ss_dssp TCSEEEEEEETTTBSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCeEEEEECCCCccccccCCceEEEEEeCCEEEEEEECHHHCCCccccccccCCCCHHHHHHHHHHHHCCCCCchHHHH
Confidence 9999999999 9999999999999999999999999999999999888888888899999999999999999778899 9
Q ss_pred HHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Q 023127 228 LILNAAAALLVSCKVN--TLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (287)
Q Consensus 228 v~~naa~~L~~~G~~~--s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (287)
|++|||++||++|+++ |++||+++|+++|+||+|+++|++|+++++
T Consensus 326 v~~naa~~L~~~g~~~~~~~~eg~~~A~~~i~sG~A~~~l~~~v~~~~ 373 (374)
T 1vqu_A 326 VALNAALALQVAGAVPLLDHAQGVSVAKEILQTGTAWAKLAQLVYFLG 373 (374)
T ss_dssp HHHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 9999999999999999 999999999999999999999999999875
No 4
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A
Probab=100.00 E-value=1.8e-74 Score=536.11 Aligned_cols=268 Identities=46% Similarity=0.735 Sum_probs=257.2
Q ss_pred CccccccccCC-CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHH
Q 023127 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (287)
Q Consensus 1 ~~~~~~~~~~~-~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~ 79 (287)
|++++.+++.+ ++++|+|||||||.+||||||++|+++|++|+||+|||||+++|++||+|+||+||++++++++++++
T Consensus 59 m~~~~~~~~~~~~~~vD~~gTGGdg~~tfNiSt~~a~v~Aa~Gv~V~kHGnr~~ss~~GsaDvLeaLG~~~~~~~~~~~~ 138 (329)
T 2elc_A 59 MREAARPLRVHRRPLLDIVGTGGDGKGLMNLSTLAALVAAAGGVAVAKHGNRAASSRAGSADLLEALGVDLEAPPERVGE 138 (329)
T ss_dssp HHHHSCCCCCCCSSEEEEEECCCCSSCCCCCHHHHHHHHHHTTCEEEEEECCCTTTTCSHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHhCCCCCCCCCCeeEEcCCCCCCCCccccHHHHHHHHHhCCCCEEEeCCCCCCCcccHHHHHHhCCCCCCCCHHHHHH
Confidence 56777777654 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec
Q 023127 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (287)
Q Consensus 80 ~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G 159 (287)
+|++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++|++|||||+|.++++++++.+| ++++||||
T Consensus 139 ~l~~~g~~fl~a~~~hPa~k~~~~~R~~lg~rTvfn~lgpL~nPa~~~~~v~Gv~~~~~~~~~a~~l~~lG-~~alVv~G 217 (329)
T 2elc_A 139 AIEELGFGFLFARVFHPAMRHVAPVRAELGVRTVFNLLGPLTNPAGADAYVLGVFSPEWLAPMAEALERLG-ARGLVVHG 217 (329)
T ss_dssp HHHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCCHHHHHTTTCCTTCCCEEEEECSSGGGHHHHHHHHHHTT-CEEEEEEE
T ss_pred HHHHCCEEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccCCceeEEeeeCHHHHHHHHHHHHHcC-CCEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHHH
Q 023127 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALILNAAAALLV 238 (287)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~~~d~v~~naa~~L~~ 238 (287)
+|+||++ .++|+|+++++|+ +.++|++||++..++++++++++++|+++++++|+|+. ++++|+|++|||++||+
T Consensus 218 ~G~dE~~-~~~t~v~~~~~g~---~~i~p~~~G~~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~~d~v~~naa~~L~~ 293 (329)
T 2elc_A 218 EGADELV-LGENRVVEVGKGA---YALTPEEVGLKRAPLEALKGGGPEENAALARRLLKGEEKGPLADAVALAAGAGFYA 293 (329)
T ss_dssp TTBSSCC-SSCEEEEETTTEE---EEECGGGGTCCCCCGGGGCCCSHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred CChhhhc-cCCeEEEEEECCE---EEECHHHcCCccCCcccCCCCCHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHH
Confidence 9999999 9999999988776 88999999999888888888999999999999999986 78899999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Q 023127 239 SCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSK 273 (287)
Q Consensus 239 ~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~ 273 (287)
+|+++|++||+++|+++|+||+|+++|++|+++++
T Consensus 294 ~g~~~~~~~g~~~A~~~i~sG~A~~~l~~~~~~~~ 328 (329)
T 2elc_A 294 AGKTPSLKEGVALAREVLASGEAYLLLERYVAFLR 328 (329)
T ss_dssp TTSSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999875
No 5
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=100.00 E-value=3.5e-73 Score=535.54 Aligned_cols=274 Identities=40% Similarity=0.654 Sum_probs=262.4
Q ss_pred CccccccccCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHH
Q 023127 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (287)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~ 77 (287)
|++++.+++.. .+++|+|||||||++||||||++|+++|++|+||+|||||+++|++||+|+||+||++++++++++
T Consensus 85 m~~~~~~v~~~~~~~~~vD~~gTGGdg~~T~niSt~~A~v~Aa~Gv~VaKHGnR~~ss~~GsaDvLEaLGv~~~l~~e~~ 164 (377)
T 3r88_A 85 MLSHAHPLPADTVPDDAVDVVGTGGDGVNTVNLSTMAAIVVAAAGVPVVKHGNRAASSLSGGADTLEALGVRIDLGPDLV 164 (377)
T ss_dssp HHHHSCCCCTTCSCTTCEEEEECCCCSCCBCCHHHHHHHHHHHTTCCEEEEECCCSSSSCCHHHHHHHTTCCCCCCHHHH
T ss_pred HHHhCCcCCCccCCCCCeEEeCCCCCCcCccccHHHHHHHHHhcCCeEEeECCCCCCCcccHHHHHHHcCCCcccchHHH
Confidence 56777777542 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEE
Q 023127 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (287)
Q Consensus 78 ~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv 157 (287)
++++++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++++|||||+|.++|+++++.+| ++++||
T Consensus 165 ~~~l~~~gi~fl~a~~~hPa~k~l~~vR~~Lg~rTifN~lgpL~NPa~~~~~liGv~~~~l~~~~a~~l~~~~-~~a~vv 243 (377)
T 3r88_A 165 ARSLAEVGIGFCFAPRFHPSYRHAAAVRREIGVPTVFNLLGPLTNPARPRAGLIGCAFADLAEVMAGVFAARR-SSVLVV 243 (377)
T ss_dssp HHHHHHHSEEEEEHHHHCGGGHHHHHHHHHHCSCCGGGGHHHHCCTTCCSEEEEECSCTTTHHHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHhccccccchhhCHHHHHHHHHHHHhccCchhhhHHHhcCcccccccccCCCCHHHhHHHHHHHHhcC-CeeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 589999
Q ss_pred ec-CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Q 023127 158 HS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAAL 236 (287)
Q Consensus 158 ~G-eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~d~v~~naa~~L 236 (287)
+| +|+||+++.++|.|+++++|+++++.++|+|||++..+++++.++++++|+++++++|+|+.++++|.|++|||++|
T Consensus 244 ~G~dGlDEis~~~~t~v~~~~~g~i~~~~i~P~d~Gl~~~~~~~l~gg~~~ena~~~~~vL~G~~~~~~d~v~lNaa~~l 323 (377)
T 3r88_A 244 HGDDGLDELTTTTTSTIWRVAAGSVDKLTFDPAGFGFARAQLDQLAGGDAQANAAAVRAVLGGARGPVRDAVVLNAAGAI 323 (377)
T ss_dssp EETTSCSSCCSSSCEEEEEEETTEEEEEEECGGGGTCCCCCGGGGBCCSHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred cCCCCCceeecccccceEEEeeceeEEEeccccccCCCcCCHHhccCCCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC-------CCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 237 LVSCKV-------NTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 237 ~~~G~~-------~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
|+.|.. +|++||+++|+++|+||+|+++|++|++++++.
T Consensus 324 ~~~g~~~~~~~~~~sl~eG~~~A~e~l~sG~A~~kl~~~i~~s~~~ 369 (377)
T 3r88_A 324 VAHAGLSSRAEWLPAWEEGLRRASAAIDTGAAEQLLARWVRFGRQI 369 (377)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHTC
T ss_pred HHhcCccccccccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 987654 379999999999999999999999999999986
No 6
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=100.00 E-value=3e-73 Score=530.68 Aligned_cols=271 Identities=34% Similarity=0.545 Sum_probs=257.6
Q ss_pred CccccccccCCCCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCCCCHHHHHHH
Q 023127 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (287)
Q Consensus 1 ~~~~~~~~~~~~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~~s~e~~~~~ 80 (287)
|++++.+++.+ +++|+|||||||++||||||++|+++|++ +||+|||||+++|++||+|+||+||+++++++++++++
T Consensus 62 m~~~~~~~~~~-~~vD~~gTGGdg~~tfNiSt~~A~v~Aa~-v~VaKHGnR~~ss~~GsaDvLEaLGv~~~~~~e~~~~~ 139 (345)
T 1o17_A 62 MRELAIKIDVP-NAIDTAGTGGDGLGTVNVSTASAILLSLV-NPVAKHGNRAVSGKSGSADVLEALGYNIIVPPERAKEL 139 (345)
T ss_dssp HHHHSCCCCCT-TCEECCC----CCCBCCHHHHHHHHHTTT-SCEEEEECCCSSSSCSHHHHHHHHTBCCCCCHHHHHHH
T ss_pred HHHhCCCCCCC-CceeeCCCCCCCCCccchHHHHHHHHHHc-CCEEEECCCCCCCcccHHHHHHhCCCCCCCCHHHHHHH
Confidence 56777777554 68999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEec-
Q 023127 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (287)
Q Consensus 81 l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~G- 159 (287)
+++.||+|+++|.|||+|++++++|++||+||+||++|||+||+++++|++|||||+|.++++++++.+|.++++||+|
T Consensus 140 l~~~gi~fl~a~~~hPa~k~l~~~R~~lg~rTvfN~lgpL~nPa~~~~ql~Gv~~~~~~~~~A~~l~~lG~~~alVv~G~ 219 (345)
T 1o17_A 140 VNKTNFVFLFAQYYHPAMKNVANVRKTLGIRTIFNILGPLTNPANAKYQLMGVFSKDHLDLLSKSAYELDFNKIILVYGE 219 (345)
T ss_dssp HHHHSEEEEEHHHHCGGGGGTHHHHHHHCSCCGGGGCGGGCCTTCCSEEEEECSSHHHHHHHHHHHTTSCCSEEEEEEET
T ss_pred HHHcCEEEEehHHhChHHHHHHHHHHHhCCCCHHHHHHHhcCccCCCeEEEEeeCHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHc
Q 023127 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALILNAAAALLVS 239 (287)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~~~~~d~v~~naa~~L~~~ 239 (287)
+|+||+++.++|.|+++++|+++++.++|+|||++..+++++.++++++|+++++++|+|+.++++|+|++|||++||++
T Consensus 220 ~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~d~Gl~~~~~~~l~~g~~~e~a~~~~~vL~G~~~~~~d~v~~naa~~L~~~ 299 (345)
T 1o17_A 220 PGIDEVSPIGNTFMKIVSKRGIEEVKLNVTDFGISPIPIEKLIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFAL 299 (345)
T ss_dssp TTBSSCCSSSEEEEEEEETTEEEEEEEEGGGGTCCCCCGGGTBCSSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHhcccCCcEEEEEeCCeEEEEEEChhhcCCCCCChhccCCCCHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999888888889999999999999999987789999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 240 CKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 240 G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
|+++|++||+++|+++|+ +|+++|++|++++++.
T Consensus 300 g~~~~~~eg~~~A~~~i~--~A~~~l~~~~~~~~~~ 333 (345)
T 1o17_A 300 DRVGDFREGYEYADHLIE--KSLDKLNEIISMNGDV 333 (345)
T ss_dssp TSSSSHHHHHHHHHHHHT--THHHHHHHHHHHSBCH
T ss_pred CCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHhCCc
Confidence 999999999999999999 9999999999998864
No 7
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=100.00 E-value=7.9e-51 Score=387.26 Aligned_cols=236 Identities=25% Similarity=0.294 Sum_probs=217.8
Q ss_pred CccccccccCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCHHH
Q 023127 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (287)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~e~ 76 (287)
|++++.+++.+ ++++|+|||||||++| ||++|+++|++|+||+|||||+++|++||+|+||+| |+++++++++
T Consensus 65 m~~~~~~~~~~~~~~~~vD~~gTGGdG~~t---St~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaLpGi~~~ls~e~ 141 (436)
T 3h5q_A 65 MVNSGDMIDLSDIKGVKVDKHSTGGVGDTT---TLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEAT 141 (436)
T ss_dssp HHTTSCCCCCTTSCSCCEEEEECCCTTCCH---HHHHHHHHHHTTCCEEEECCCCSSSSCCHHHHHTTSTTCCCCCCHHH
T ss_pred HHHhCCcCCccccCCCceeecCCCCCCCCh---HHHHHHHHHhCCCCEEeECCCCCCCcccHHHHHHhCcCCCCCCCHHH
Confidence 56677666543 4689999999999986 999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCeEEEe-CCccchhhhhhHHHHhhhCCCChhHhhhhccC--------CCCCCceEEeee--------ChhhH
Q 023127 77 VRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------PACVPFAVVGVY--------NENLV 139 (287)
Q Consensus 77 ~~~~l~~~g~~fl~-~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlN--------P~~~~~~v~Gv~--------h~~~~ 139 (287)
+.++|++.||+|++ ++.|||+|++++++|++ +||+||+ ||+| |++++++|+||+ +++..
T Consensus 142 ~~~~l~~~g~~fl~~a~~~~Pa~~~l~~lR~~--~~Tvfni--PLinaSimSKKlpag~~~~vlgV~~G~gaf~~~~~~a 217 (436)
T 3h5q_A 142 FVKLVNENKVAVVGQSGNLTPADKKLYALRDV--TGTVNSI--PLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDA 217 (436)
T ss_dssp HHHHHHHHSEEEECCCSSSCHHHHHHHHHHHT--TTCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEESTTSSBCSHHHH
T ss_pred HHHHHHHcCCEEEccccccCHHHHHHHHHHhc--cCCcCCh--hhhccchhccccccCCCeEEEeeecCccccCCCHHHH
Confidence 99999999999998 69999999999999999 6899999 9999 999999999999 99999
Q ss_pred HHHHHHHHHcCCCeEEEEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCC
Q 023127 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (287)
Q Consensus 140 ~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G 219 (287)
+.+++++..+|.+. +.+++++++++. +| ||+. ++++.++++ ++++|+|
T Consensus 218 ~~lA~~l~~lG~~~---------------G~~~v~~lt~~~------~P--lG~~--------~G~~~E~ae-~~~vL~G 265 (436)
T 3h5q_A 218 EALAHAMVRIGNNV---------------GRNTMAIISDMN------QP--LGRA--------IGNALELQE-AIDTLKG 265 (436)
T ss_dssp HHHHHHHHHHHHHH---------------TCCEEEEEEECS------SC--SSSE--------EESHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHhhhhc---------------CCeEEEEEcCCC------CC--CCCC--------CCCHHHHHH-HHHHHCC
Confidence 99999999998642 677888888776 45 7763 578999999 9999999
Q ss_pred C-CchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 220 E-RGAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 220 ~-~~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+ .++++|.|++|||.+||+.|++++++||+++|+++|+||+|+++|++|+++|+++
T Consensus 266 ~~~~~~~d~vl~nAa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~~l~~~v~~qGg~ 322 (436)
T 3h5q_A 266 QGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGD 322 (436)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCC
T ss_pred CCCccHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhCcHHHHHHHHHHHHhCCC
Confidence 9 4689999999999999999999999999999999999999999999999999986
No 8
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=100.00 E-value=1e-49 Score=378.32 Aligned_cols=234 Identities=21% Similarity=0.239 Sum_probs=209.2
Q ss_pred CccccccccCCC--CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCHHHH
Q 023127 1 MIKYATKVEGLG--DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGV 77 (287)
Q Consensus 1 ~~~~~~~~~~~~--~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~e~~ 77 (287)
|++++.+++.+. .++|+|||||||. ||||++|+++|+||+||+|||||+++|++||+|+||+| |+++++++|++
T Consensus 62 M~~~~~~l~~~~~~~~vD~~gTGGdG~---niSt~~a~vvAa~Gv~VaKhGnR~~ss~~GsaDvLEaL~Gv~i~l~~e~~ 138 (423)
T 2dsj_A 62 MARSGKVLDLSGLPHPVDKHSSGGVGD---KVSLVVGPILAASGCTFAKMSGRGLAHTGGTIDKLESVPGWRGEMTEAEF 138 (423)
T ss_dssp HHTSSBCCCCTTSSSBEEEEEESSSCC---STHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHHHH
T ss_pred HHHhCCcCCccccCCceeEecCCCCCc---cHHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHhCCCCCCCCCHHHH
Confidence 567777775532 2899999999998 79999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhcCeEEEeC-CccchhhhhhHHHHhhhC-CCChhHhhhhccC---CCCCCceEE------eee--ChhhHHHHHH
Q 023127 78 RRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLK-VKTVFNILGPMLN---PACVPFAVV------GVY--NENLVLKMAN 144 (287)
Q Consensus 78 ~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~Lg-~Rt~~ntl~~LlN---P~~~~~~v~------Gv~--h~~~~~~~~~ 144 (287)
.+++++.||+|+++ +.|||+|++++++|+++| +||+||+++||+| |++++++|+ |+| ++++.+.+++
T Consensus 139 ~~~l~~~Gi~f~~~~~~~~PA~k~l~~lR~~lgtv~Ti~nilgpl~nkK~pag~~~~vldV~~G~Gaf~~~~~~~~~lA~ 218 (423)
T 2dsj_A 139 LERARRVGLVIAAQSPDLAPLDGKLYALRDVTATVESVPLIASSIMSKKLAAGARSIVLDVKVGRGAFMKTLEEARLLAK 218 (423)
T ss_dssp HHHHHHTSEEEESCGGGBSHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTCSEEEEEEEESSSTTCBCHHHHHHHHH
T ss_pred HHHHHHcCEEEEecccccChHHHHHHHHHHHhcccCcHHHhHHHHhcCccCCCCCeEEEEeccCCCcccCCHHHHHHHHH
Confidence 99999999999877 899999999999999999 8999999999999 999999999 669 9999999999
Q ss_pred HHHHcCCCeEEEEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC-ch
Q 023127 145 ALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA 223 (287)
Q Consensus 145 ~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~-~~ 223 (287)
++..+|.+ .+.+.++++++++ +++|+ .+++++++++.++ +|+|+. .+
T Consensus 219 ~l~~lg~~---------------~G~~~v~~l~dg~--------~plg~--------~~G~a~E~ae~i~-vL~G~g~~~ 266 (423)
T 2dsj_A 219 TMVAIGQG---------------AGRRVRALLTSME--------APLGR--------AVGNAIEVREAIE-ALKGEGPGD 266 (423)
T ss_dssp HHHHHHHH---------------TTCEEEEEEEECS--------SCSSS--------EEESHHHHHHHHH-HHTTCSCHH
T ss_pred HHHHHHHH---------------cCCeEEEEEcCCC--------Ccccc--------cCCCHHHHHHHHH-HHCCCCchh
Confidence 99998853 2467777777664 33443 3478999999885 999984 46
Q ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 224 IADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 224 ~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
++|.|++|||.+||++|+ |+ ++|+++|+||+|+++|++|+++|+++
T Consensus 267 ~~d~vl~nAa~~L~~ag~--~l----~~A~~~l~sG~A~~kl~~li~~~~g~ 312 (423)
T 2dsj_A 267 LLEVALALAEEALRLEGL--DP----ALARKALEGGAALEKFRAFLEAQGGD 312 (423)
T ss_dssp HHHHHHHHHHHHHHHTTC--CT----HHHHHHHHTSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHcCC--CH----HHHHHHHhcCcHHHHHHHHHHHhCCC
Confidence 899999999999999998 55 89999999999999999999999985
No 9
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=100.00 E-value=8.7e-49 Score=373.95 Aligned_cols=232 Identities=23% Similarity=0.303 Sum_probs=208.1
Q ss_pred CccccccccCC---CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCHHH
Q 023127 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (287)
Q Consensus 1 ~~~~~~~~~~~---~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~e~ 76 (287)
|++++.+++.+ .+++|+|||||||++ |||++|+++|++|+||+|||||++++++||+|+||+| |+++++++++
T Consensus 62 M~~~~~~v~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GsaDvLEaL~Gv~i~ls~e~ 138 (433)
T 1brw_A 62 MVQSGEMLDLSSIRGVKVDKHSTGGVGDT---TTLVLGPLVASVGVPVAKMSGRGLGHTGGTIDKLESVPGFHVEISKDE 138 (433)
T ss_dssp HHHTSCCCCCTTSCSCCEEEEECCCSSCC---HHHHHHHHHHTTTCCEEEEECCCBTTBCCHHHHHTTSTTCCCCCCHHH
T ss_pred HHHhCCcCCcccccCCceeeCCCCCCCcc---hHHHHHHHHHhCCCcEEEECCCCCCCCCCHHHHHHHCcCceecCCHHH
Confidence 56777777543 258999999999996 8999999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCeEEEeC-CccchhhhhhHHHHhhhCCCChhHhhhhccCC--------CCCCceEEee------e------C
Q 023127 77 VRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------N 135 (287)
Q Consensus 77 ~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP--------~~~~~~v~Gv------~------h 135 (287)
+.+++++.||+|+++ +.|||+|++++++|+++ ||+||+ ||+|| .+++++|+|| | |
T Consensus 139 ~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~s~lskklA~G~~~~VlgVk~G~gaf~~~~de~ 214 (433)
T 1brw_A 139 FIRLVNENGIAIIGQTGDLTPADKKLYALRDVT--ATVNSI--PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEA 214 (433)
T ss_dssp HHHHHHHHSEEEEECCTTSCHHHHHHHHHHHHH--TCCCCH--HHHHHHHHHHHHHHCCSEEEEEEEESTTSSCCSHHHH
T ss_pred HHHHHHHcCeeEecCchhhCHHHHHHHHHHHhh--CCccCh--hhcCcHhhHHHHhcCCCEEEEEeecccccccCCHHHH
Confidence 999999999999999 59999999999999999 899999 99999 6788999999 8 8
Q ss_pred hhhHHHHHHHHHHcCCCeEEEEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 023127 136 ENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRR 215 (287)
Q Consensus 136 ~~~~~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~ 215 (287)
+.+.+.+.+.++.+|..+..++++ ++ +++|. .+++++++++. ++
T Consensus 215 ~~l~~~~v~~~~~~G~~~~~~i~~--~~-------------------------~plg~--------~~G~a~E~a~~-~~ 258 (433)
T 1brw_A 215 RRLARVMVDIGKRVGRRTMAVISD--MS-------------------------QPLGY--------AVGNALEVKEA-IE 258 (433)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEE--CS-------------------------SCSSS--------EESSHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCCEEEEEEcC--CC-------------------------Ccccc--------cCCCHHHHHHH-HH
Confidence 899999999999999877777762 11 23332 14688899855 99
Q ss_pred HHCCCC-chHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 216 VLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 216 vL~G~~-~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+|+|+. .+++|.|++|||.+||+.|+++|++||+++|+++|+||+|+++|++|+++|+++
T Consensus 259 vL~G~g~~~~~d~vl~nAa~~L~~~g~a~~~~eg~~~A~~~i~sG~A~~kl~~~i~~~~g~ 319 (433)
T 1brw_A 259 TLKGNGPHDLTELCLTLGSHMVYLAEKAPSLDEARRLLEEAIRSGAAIAAFKTFLAAQGGD 319 (433)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHTTSSSSHHHHHHHHHHHHHHTHHHHHHHHHHHHTTCC
T ss_pred HHCCCCChhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCC
Confidence 999984 468899999999999999999999999999999999999999999999999985
No 10
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=100.00 E-value=1.7e-48 Score=374.56 Aligned_cols=232 Identities=23% Similarity=0.279 Sum_probs=209.5
Q ss_pred CccccccccCCC----CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCHH
Q 023127 1 MIKYATKVEGLG----DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPE 75 (287)
Q Consensus 1 ~~~~~~~~~~~~----~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~e 75 (287)
|++++.+++.+. +++|+|||||||++ |||++|+++|++|+||+|||||+++|++||+|+||+| |++++++++
T Consensus 89 Mr~~~~~v~~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnRa~ss~~GSaDvLEaLpGv~i~ls~e 165 (474)
T 1uou_A 89 LAQSGQQLEWPEAWRQQLVDKHSTGGVGDK---VSLVLAPALAACGCKVPMISGRGLGHTGGTLDKLESIPGFNVIQSPE 165 (474)
T ss_dssp HHTTSCCCCCCGGGGGGBEEEEESCCTTCC---HHHHHHHHHHTTTCBEEEECCCCBTTBCCHHHHHTTSTTCCCCCCHH
T ss_pred HHHhCCcCCcccccCCCeeEeCCCCCCCce---eHHHHHHHHHhCCCCEEEECCCCCCCCCCHHHHHHhCCCCCCCCCHH
Confidence 567777775432 58999999999998 8999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhcCeEEEeC-CccchhhhhhHHHHhhhCCCChhHhhhhccCC--------CCCCceEEee------e------
Q 023127 76 GVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGV------Y------ 134 (287)
Q Consensus 76 ~~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP--------~~~~~~v~Gv------~------ 134 (287)
++.+++++.||+|+++ +.|||+|++++++|+++ ||+||+ ||+|| ....++|+|| |
T Consensus 166 ~~~~~l~~~Gi~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLinpsi~skklA~g~~~~VlgVk~G~gafm~~lde 241 (474)
T 1uou_A 166 QMQVLLDQAGCCIVGQSEQLVPADGILYAARDVT--ATVDSL--PLITASILSKKLVEGLSALVVDVKFGGAAVFPNQEQ 241 (474)
T ss_dssp HHHHHHHHHSEEEECCCSSSSHHHHHHHHHHHHT--TCSSCH--HHHHHHHHHHHHHTTCSEEEEEEEEC--CCCCSHHH
T ss_pred HHHHHHHHcCeEEecCchhhCHHHHHHHHHHhhh--CCccch--hhcCcHHHHHHHhhcCCeEEEEeccccccccCCHHH
Confidence 9999999999999999 69999999999999995 899999 99999 7888999999 8
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEecCCccccccCCceeEEEEeCCeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHH
Q 023127 135 NENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLR 214 (287)
Q Consensus 135 h~~~~~~~~~~~~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~ 214 (287)
|+.+.+.+.+.++.+|.++.+++++ ++ +++|. .++++.++++. .
T Consensus 242 ~~~la~~~v~~~~~~G~~~~~vitd--~~-------------------------~plg~--------~~G~a~E~ae~-~ 285 (474)
T 1uou_A 242 ARELAKTLVGVGASLGLRVAAALTA--MD-------------------------KPLGR--------CVGHALEVEEA-L 285 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEE--CS-------------------------SCSTT--------EESSHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEec--CC-------------------------Ccccc--------cCCCHHHHHHH-H
Confidence 8899999999999999988888873 22 12332 14688999875 5
Q ss_pred HHHCCCC-chHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 215 RVLSGER-GAIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 215 ~vL~G~~-~~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
++|+|+. .+++|+|++|||.+||++|+++|+++|+++|+++|+||+|+++|++|+++|+++
T Consensus 286 ~vL~G~g~~~~~d~vl~nAa~~L~~aG~a~~~~eg~~~A~e~i~sG~A~~kl~~li~~~~g~ 347 (474)
T 1uou_A 286 LCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDGSALGRFERMLAAQGVD 347 (474)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHSSHHHHHHHHHHHHTTCC
T ss_pred HHHCCCCchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCC
Confidence 9999985 588999999999999999999999999999999999999999999999999885
No 11
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=100.00 E-value=4.8e-49 Score=376.42 Aligned_cols=243 Identities=23% Similarity=0.243 Sum_probs=193.9
Q ss_pred CccccccccCCC-----CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHc-CCCCCCCH
Q 023127 1 MIKYATKVEGLG-----DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (287)
Q Consensus 1 ~~~~~~~~~~~~-----~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaL-Gi~~~~s~ 74 (287)
|++++.+++.+. +++|+|||||||.+ |||++|+++|++|+||+|||||+++|++||+|+||+| |+++++++
T Consensus 63 m~~~~~~~~~~~~~~~~~~vD~~gTGGdG~~---iSt~~A~vvAa~Gv~VaKHGnR~~ss~~GsaDvLEaL~Gv~~~ls~ 139 (440)
T 2tpt_A 63 MRDSGTVLDWKSLHLNGPIVDKHSTGGVGDV---TSLMLGPMVAACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDD 139 (440)
T ss_dssp HHHTSBCCCCTTTTCSSCBEEEEECCCSSCC---HHHHHHHHHHHTTCBEEEEECCCCTTSCCHHHHHTTSTTCCSCCCH
T ss_pred HHHhCCcCCCcccccCCCeeeeCCCCCCCcc---HHHHHHHHHHhCCCcEEEECCCCCCCcccHHHHHHhCcCCCCCCCH
Confidence 566677775433 58999999999997 8999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHhcCeEEEeC-CccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCe
Q 023127 75 EGVRRCVDEAGIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (287)
Q Consensus 75 e~~~~~l~~~g~~fl~~-~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~ 153 (287)
+++.+++++.||+|+++ +.|||+|++++++|+++ ||+||+ ||+|| +.+.+++++ |.+
T Consensus 140 e~~~~~l~~~G~~fl~a~~~~hPA~k~l~~lR~~l--rTvfNi--PLin~------------s~lskk~A~-----G~~- 197 (440)
T 2tpt_A 140 NRFREIIKDVGVAIIGQTSSLAPADKRFYATRDIT--ATVDSI--PLITA------------SILAKKLAE-----GLD- 197 (440)
T ss_dssp HHHHHHHHHTSEEEEECCTTBSHHHHHHHHHHHHT--TCCCCH--HHHHH------------HHHHHHHTT-----CCS-
T ss_pred HHHHHHHHHcCEEEEcCchhhCHHHHHHHHHHHhh--CCccCh--hhcCC------------HHHHHHHhc-----CCC-
Confidence 99999999999999999 89999999999999999 899999 99997 233333331 554
Q ss_pred EEEE---ecC-----CccccccCCceeEEEEeC-CeEEEEEEccCCCCCCCCCCCCCCCCChHHHHHHHHHHHCCCC--c
Q 023127 154 ALVV---HSE-----GLDEMSPLGPGLILDVTQ-EKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER--G 222 (287)
Q Consensus 154 ~lvv---~Ge-----G~dE~s~~~~t~v~~~~~-g~~~~~~~~p~~~gl~~~~~~~~~~~~~~~~a~~~~~vL~G~~--~ 222 (287)
++|+ +|. |+||+++.+++.+++..+ |......++..+ .++... ++++.++++. +++|+|+. .
T Consensus 198 alVvdVk~G~gaf~~~~de~~~la~t~v~~~~~~G~~~~a~itd~~-----~plg~~-~G~a~E~ae~-~~vL~G~g~~~ 270 (440)
T 2tpt_A 198 ALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLTDMN-----QVLASS-AGNAVEVREA-VQFLTGEYRNP 270 (440)
T ss_dssp EEEEEEEESTTSSSSSHHHHHHHHHHHHHHHHHTTCEEEEEEEECS-----SCSSSC-EESHHHHHHH-HHHHHTSCCCH
T ss_pred eEEEEeccCCccccCCHHHHHHHHHHHHHHHHHcCCceEEEecCCC-----Cchhhc-CCCHHHHHHH-HHHHCCCCCch
Confidence 5555 552 455655544443322110 111111111100 122222 5789999987 99999984 3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 223 AIADALILNAAAALLVSCKVNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 223 ~~~d~v~~naa~~L~~~G~~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
+++|+|++|||.+||++|+++|+++|+++|+++|+||+|+++|++|+++|+++
T Consensus 271 ~~~d~vl~nAa~~L~~ag~a~~~~eg~~~A~~~i~sG~A~~kl~~~v~~~~g~ 323 (440)
T 2tpt_A 271 RLFDVTMALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGP 323 (440)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHHHHTSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999999999999999999999999999885
No 12
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=63.80 E-value=5.1 Score=36.03 Aligned_cols=123 Identities=21% Similarity=0.185 Sum_probs=80.1
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCC------HHHHHHH---------cCCCCCCCHHHHHHHH
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEA---------LGVVIDLDPEGVRRCV 81 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G------s~dvLea---------LGi~~~~s~e~~~~~l 81 (287)
++..|.+|..| -....+++..+|++|+-.|+=+==++.+ |+|+-|- -|++--++.....+.|
T Consensus 105 ~~a~g~~GaTT---VaaTm~lA~~AGI~VFaTGGiGGVHRgae~t~DISaDL~eLarTpV~VVcaG~KsILDi~~TLE~L 181 (316)
T 4ex8_A 105 ALAGGGLGATT---VAGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDISPDLLQFRKTKMTVVSGGAKSILDHRLTAEYL 181 (316)
T ss_dssp HHHHCSCBEEC---HHHHHHHHHHHTCCEEECSCBCCBBTTHHHHCCBCTHHHHTTTCCEEEEESBBCTTBCHHHHHHHH
T ss_pred HHhCCCCcccc---HHHHHHHHHHCCCcEEEeCCccccCCCCCCCcchhhhHHHhcCCCeEEEecccchhhcchHHHHHH
Confidence 45678888876 3345566677899999988755222322 6676662 1566668889999999
Q ss_pred HhcCeEEEeC-Cccchhh------------------hhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHH
Q 023127 82 DEAGIGFMMS-TKYHPAM------------------KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (287)
Q Consensus 82 ~~~g~~fl~~-~~~~P~l------------------~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (287)
|..|+..+.. .+.+|++ .+++..+++||+.+-+ -+.||....+.+-+- .....+
T Consensus 182 ET~GV~Vvgy~td~fPaFy~r~Sg~~~pr~d~~~e~A~~~~a~~~lgl~~g~----lvanPiP~e~~~~~~---~i~~~I 254 (316)
T 4ex8_A 182 ETAGVPVYGYRTDKLAAFVVREADVPVTRMDDLHTAARAAEAHWQVNGPGTV----LLTSPIDEQDAVDEA---IVEAAI 254 (316)
T ss_dssp HHTTCCEEEETCSBCCBTTBSCCSCBCEEESSHHHHHHHHHHHHHHHCSCEE----EEECCCCGGGCCCHH---HHHHHH
T ss_pred HhCCceEEEecCCCCceeeeCCCCCcCCCCCCHHHHHHHHHHHHHhCCCCeE----EEEcCCChhhcCCHH---HHHHHH
Confidence 9999987754 5555643 4567778888877642 367887766654332 233344
Q ss_pred HHHHHHc
Q 023127 143 ANALQRF 149 (287)
Q Consensus 143 ~~~~~~l 149 (287)
.++++..
T Consensus 255 ~~Al~eA 261 (316)
T 4ex8_A 255 AEALAQC 261 (316)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
No 13
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=58.17 E-value=16 Score=33.10 Aligned_cols=123 Identities=24% Similarity=0.255 Sum_probs=77.9
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCC------HHHHHHH---------cCCCCCCCHHHHHHHH
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG------SADVLEA---------LGVVIDLDPEGVRRCV 81 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G------s~dvLea---------LGi~~~~s~e~~~~~l 81 (287)
++..|.+|..| -....+++..+|++|+-.|+=+==++.+ |+|+-|- -|++--++.....+.|
T Consensus 125 ~~a~~~~GaTT---VaaTm~lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~eLarTpV~VVcAG~KSILDi~~TLE~L 201 (335)
T 4gim_A 125 VVAAGKNGATT---VASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTVVCAGAASILDLGLTTEYL 201 (335)
T ss_dssp HHHTTCCEEEC---HHHHHHHHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHHHHHSCCEEEECBCCTTBCHHHHHHHH
T ss_pred HhhcCCCcccc---HHHHHHHHHHCCCcEEeeCCcCccCCCCCCCccccchHHHhccCCeEEEeecchhhccchhHHHHH
Confidence 34567888776 3345566777899999888755222322 6776663 2556668889999999
Q ss_pred HhcCeEEEeC-Cccchhh-------------------hhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHH
Q 023127 82 DEAGIGFMMS-TKYHPAM-------------------KFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (287)
Q Consensus 82 ~~~g~~fl~~-~~~~P~l-------------------~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~ 141 (287)
|..|+..+.. .+..|++ .+++..|++||+.+-. -+.||....+.+-.- .....
T Consensus 202 ET~GVpVvgy~td~fPaFy~r~Sg~~~~~rvd~~~e~A~i~~~~~~lgl~~g~----lvanPIP~e~~i~~~---~i~~~ 274 (335)
T 4gim_A 202 ETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARAMVVKWQSGLNGGL----VVANPIPEQFAMPEH---TINAA 274 (335)
T ss_dssp HHTTCCEEEETCSBCCBTTBSCCSSBCSEEECCHHHHHHHHHHHHHTTCCSCE----EEECCCCGGGCCCHH---HHHHH
T ss_pred HhcCceEEEecCCCCceeeccCCCCcCcceeCCHHHHHHHHHHHHHcCCCCce----EEeCCCCchhcCCHH---HHHHH
Confidence 9999877643 4444443 3467778888876532 467887776664322 23333
Q ss_pred HHHHHHHc
Q 023127 142 MANALQRF 149 (287)
Q Consensus 142 ~~~~~~~l 149 (287)
+.++++..
T Consensus 275 I~~Al~eA 282 (335)
T 4gim_A 275 IDQAVAEA 282 (335)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44454443
No 14
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=40.01 E-value=93 Score=27.58 Aligned_cols=116 Identities=25% Similarity=0.304 Sum_probs=73.3
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCC---HHHHHHH---------cCCCCCCCHHHHHHHHHhc
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG---SADVLEA---------LGVVIDLDPEGVRRCVDEA 84 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~G---s~dvLea---------LGi~~~~s~e~~~~~l~~~ 84 (287)
++..|.+|..| -....+++..+|++|+-.|+=+==++.. |+|+-|- -|++--++.....+.||..
T Consensus 98 ~~a~g~~GaTT---VaaTm~lA~~AGI~VFaTGGiGGVHRgt~DISaDL~eL~rTpV~VVcaG~KsILDi~~TLE~LET~ 174 (297)
T 1vkm_A 98 VVAEGKNAATT---VSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETL 174 (297)
T ss_dssp HHHHTCCEEEC---HHHHHHHHHHHTCCEEECSCBCCBCTTSSCBCHHHHHHTTCCEEEEESBBCTTSCHHHHHHHHHHT
T ss_pred HHhCCCCchhh---HHHHHHHHHHcCCcEEEecccccccCCCcccchhHHHhcCCCeEEEecccchhhcchhHHHHHHhC
Confidence 45668888876 3344556677899999988644222322 6777663 2455557788888888888
Q ss_pred CeEEEeC-CccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCCCeEEEEe
Q 023127 85 GIGFMMS-TKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (287)
Q Consensus 85 g~~fl~~-~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~ 158 (287)
|+..+.. .+.+|++.. |+ =| +..+ -+-+|+-...+..+-..+|.+..++|-
T Consensus 175 GV~Vvgy~t~~fPaF~t----r~-Sg--------------~~~p----~~d~~~e~A~~~~~~~~lgl~~g~lva 226 (297)
T 1vkm_A 175 EIPLVGFRTNEFPLFFS----RK-SG--------------RRVP----RIENVEEVLKIYESMKEMELEKTLMVL 226 (297)
T ss_dssp TCCEEEESCSBCCBTTB----SC-CS--------------CBCC----EECSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CceEEEecCCCCCceec----CC-CC--------------CcCC----CCCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 8876644 556666532 11 11 1111 355666666666777888988888873
No 15
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=39.28 E-value=25 Score=30.88 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=44.7
Q ss_pred CCcceeeCC-CCCCCCCccchHHHHHHHHhCCCcEEeecCCCC----------CCcCCHHHHHHHcCCCCCCCHHHHHHH
Q 023127 12 GDAVDIVGT-GGDGANTVNISTGASILAAACGAKVAKQGSRSS----------SSACGSADVLEALGVVIDLDPEGVRRC 80 (287)
Q Consensus 12 ~~~~D~~gt-ggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~----------~~~~Gs~dvLeaLGi~~~~s~e~~~~~ 80 (287)
..+|=++|+ ||.|+.| ++.-.|..+|+.|.+|+.--.+-. ....|..|+|.. ..+++++...
T Consensus 104 ~kvI~vts~kgG~GKTt--va~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~~gl~~~L~~-----~~~l~~~i~~ 176 (299)
T 3cio_A 104 NNILMITGATPDSGKTF--VSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAG-----KDELNKVIQH 176 (299)
T ss_dssp CCEEEEEESSSSSCHHH--HHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCSSSHHHHHTT-----SSCHHHHCEE
T ss_pred CeEEEEECCCCCCChHH--HHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCCCCHHHHCcC-----CCCHHHhhhc
Confidence 456667775 7888886 577778888999999998654431 122345555532 1234443222
Q ss_pred HHhcCeEEEeCC
Q 023127 81 VDEAGIGFMMST 92 (287)
Q Consensus 81 l~~~g~~fl~~~ 92 (287)
....|+-+++..
T Consensus 177 ~~~~~l~vl~~g 188 (299)
T 3cio_A 177 FGKGGFDVITRG 188 (299)
T ss_dssp ETTTTEEEECCC
T ss_pred cCCCCEEEEECC
Confidence 223678877764
No 16
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=38.84 E-value=74 Score=23.98 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=18.3
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEe
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAK 47 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~k 47 (287)
|=++|.+|.|+ ||++-.+ ...|++++.
T Consensus 4 I~l~G~~GsGK-----sT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 4 ILITGMPGSGK-----SEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEECCTTSCH-----HHHHHHH-HHTTCEEEE
T ss_pred EEEECCCCCCH-----HHHHHHH-HHCCCcEEE
Confidence 44677777777 5566666 777887664
No 17
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=37.04 E-value=28 Score=30.07 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=43.9
Q ss_pred CCcceeeCC-CCCCCCCccchHHHHHHHHhCCCcEEeecCCCC----------CCcCCHHHHHHHcCCCCCCCHHHHHHH
Q 023127 12 GDAVDIVGT-GGDGANTVNISTGASILAAACGAKVAKQGSRSS----------SSACGSADVLEALGVVIDLDPEGVRRC 80 (287)
Q Consensus 12 ~~~~D~~gt-ggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~----------~~~~Gs~dvLeaLGi~~~~s~e~~~~~ 80 (287)
..+|=+.++ ||.|+.| ++.-.|..+|+.|.+|+.--.+-. ....|..|+|.. ..+++++-..
T Consensus 82 ~kvI~vts~kgG~GKTt--~a~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~~gl~~~L~~-----~~~l~~~i~~ 154 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKST--IAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLN-----WSTYQDSIIS 154 (271)
T ss_dssp CCEEEEECSSTTSSHHH--HHHHHHHHHHHTTCCEEEEECCSSSCCHHHHTTCCCSSSHHHHHTT-----SSCHHHHEEE
T ss_pred CeEEEEECCCCCCcHHH--HHHHHHHHHHhCCCeEEEEeCCCCCccHHHHcCCCCCCCHHHHhCC-----CCCHHHcEEe
Confidence 356666665 7888876 566778888999999997654421 223455555542 1233333221
Q ss_pred HHhcCeEEEeCCc
Q 023127 81 VDEAGIGFMMSTK 93 (287)
Q Consensus 81 l~~~g~~fl~~~~ 93 (287)
....|+-+++...
T Consensus 155 ~~~~~l~vl~~g~ 167 (271)
T 3bfv_A 155 TEIEDLDVLTSGP 167 (271)
T ss_dssp CSSTTEEEECCCS
T ss_pred CCCCCEEEEECCC
Confidence 1225777777643
No 18
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=35.79 E-value=14 Score=32.08 Aligned_cols=76 Identities=22% Similarity=0.258 Sum_probs=44.5
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCC---------CcCCHHHHHHHcCCCC-CCCHHHHHHHHH
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSS---------SACGSADVLEALGVVI-DLDPEGVRRCVD 82 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~---------~~~Gs~dvLeaLGi~~-~~s~e~~~~~l~ 82 (287)
.+|=++|-||.|+.| ++...|..+|+.|.+|+.--.+... ...+..|++....... ..+++++... .
T Consensus 42 ~vI~v~~KGGvGKTT--~a~nLA~~La~~G~~VlliD~D~~~~~~~~l~~~~~~~l~d~l~~~~~~~~~~~~~~~i~~-~ 118 (307)
T 3end_A 42 KVFAVYGKGGIGKST--TSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE-G 118 (307)
T ss_dssp EEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE-C
T ss_pred eEEEEECCCCccHHH--HHHHHHHHHHHCCCeEEEEeCCCCCCHHHHhCccCCCCHHHHHhhccccccCCCHHHhhcc-C
Confidence 456677999999987 5666778888999999975433211 1234566665432211 1223333211 2
Q ss_pred hcCeEEEeC
Q 023127 83 EAGIGFMMS 91 (287)
Q Consensus 83 ~~g~~fl~~ 91 (287)
..|+-+++.
T Consensus 119 ~~~l~vlp~ 127 (307)
T 3end_A 119 FNGVMCVEA 127 (307)
T ss_dssp GGGCEEEEC
T ss_pred CCCceEEEC
Confidence 357777755
No 19
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=35.62 E-value=19 Score=30.39 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=42.0
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~ 71 (287)
++|+-||=.|+.+.++-+.-+---+.+.|++|+.=.|++--+..+..+.|+.+|+++.
T Consensus 9 ~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~~ 66 (264)
T 3epr_A 9 LIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETP 66 (264)
T ss_dssp EECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCCC
T ss_pred EEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCC
Confidence 5888888777777664333333345567999999888875566678899999999764
No 20
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=35.45 E-value=55 Score=24.70 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=25.0
Q ss_pred ChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023127 135 NENLVLKMANALQRFGLKRALVVHS-EGLD 163 (287)
Q Consensus 135 h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (287)
++++.+.+.+.++..|..-+.|++| +|.-
T Consensus 28 g~pL~~~Iv~~~~~~GiaGaTV~rgi~GfG 57 (114)
T 1o51_A 28 GKPLFEYLVKRAYELGMKGVTVYRGIMGFG 57 (114)
T ss_dssp TEEHHHHHHHHHHHTTCSCCEEEECSCCCC
T ss_pred CeEHHHHHHHHHHHCCCCeEEEEcCcEEEC
Confidence 5678888899999999989999999 8854
No 21
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=35.32 E-value=15 Score=32.80 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.1
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEee
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQ 48 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kH 48 (287)
+.|-||.|+.| ++...|..+|+.|.+|+.-
T Consensus 24 ~sgkGGvGKTT--va~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 24 VGGKGGVGKTT--TSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp EECSSSSSHHH--HHHHHHHHHHTSSSCEEEE
T ss_pred EeCCCCCcHHH--HHHHHHHHHHHCCCeEEEE
Confidence 56778999887 6888888999999999973
No 22
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=35.31 E-value=26 Score=29.24 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=40.8
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~ 71 (287)
++|+-||=.|+.+.++-+.-+---+.+.|++|+.=.||+.-+..+..+.|+.+|+++.
T Consensus 12 ~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~~ 69 (268)
T 3qgm_A 12 IIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVG 69 (268)
T ss_dssp EEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCCC
T ss_pred EEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCCC
Confidence 5788888777666433222233345568999998888776666678899999999753
No 23
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=34.33 E-value=1.3e+02 Score=27.61 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=91.8
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCC----CCcC---------C--HHHHHHHcCCCCCCCHHHHHHHH
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS----SSAC---------G--SADVLEALGVVIDLDPEGVRRCV 81 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~----~~~~---------G--s~dvLeaLGi~~~~s~e~~~~~l 81 (287)
|...|.+...++....-.+-.++.+|+.++|.+..-. ++.+ | .-|.++.++++.+ -..+..+.-
T Consensus 32 IAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e-~~~~L~~~~ 110 (385)
T 1vli_A 32 IAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAE-WILPLLDYC 110 (385)
T ss_dssp EEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGG-GHHHHHHHH
T ss_pred EEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHH-HHHHHHHHH
Confidence 5655555555777777788888999999999996553 2211 1 2377888877654 367888888
Q ss_pred HhcCeEEEeCCccchhhhhhHHHH---hhhCCCChhHhhhhccCCC---C-CCceEEeeeChhhHHHHHHHHHHcCCCeE
Q 023127 82 DEAGIGFMMSTKYHPAMKFVRPVR---KKLKVKTVFNILGPMLNPA---C-VPFAVVGVYNENLVLKMANALQRFGLKRA 154 (287)
Q Consensus 82 ~~~g~~fl~~~~~~P~l~~l~~lR---~~Lg~Rt~~ntl~~LlNP~---~-~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~ 154 (287)
++.|+.|+..|-=...++.+..+. -++|=|.+-|+ |||.-+ + |-..=+|...-+=...-.+.++..|.+..
T Consensus 111 ~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~~~~N~--pLL~~va~~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~i 188 (385)
T 1vli_A 111 REKQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHL--PLLKYVARLNRPMIFSTAGAEISDVHEAWRTIRAEGNNQI 188 (385)
T ss_dssp HHTTCEEECBCCSHHHHHHHHTTCCSCEEECGGGTTCH--HHHHHHHTTCSCEEEECTTCCHHHHHHHHHHHHTTTCCCE
T ss_pred HHcCCcEEEccCCHHHHHHHHhcCCCEEEECcccccCH--HHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHCCCCcE
Confidence 999999998876666666664441 24455566665 555432 1 22333466544444444666666676677
Q ss_pred EEEec-CCc
Q 023127 155 LVVHS-EGL 162 (287)
Q Consensus 155 lvv~G-eG~ 162 (287)
++.++ .++
T Consensus 189 iLlhc~s~Y 197 (385)
T 1vli_A 189 AIMHCVAKY 197 (385)
T ss_dssp EEEEECSSS
T ss_pred EEEeccCCC
Confidence 77777 554
No 24
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=34.26 E-value=77 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=32.2
Q ss_pred CCceEEeeeChhhHHHHHHHHHHcCCCeEEEEecCCc
Q 023127 126 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGL 162 (287)
Q Consensus 126 ~~~~v~Gv~h~~~~~~~~~~~~~lg~~~~lvv~GeG~ 162 (287)
-.....|-|.+...+-+..++..+|++.-++++++|+
T Consensus 19 ~n~V~TGgfg~~~v~ev~~am~~~g~~gkii~~~dGl 55 (85)
T 2l48_A 19 QNIIQSGAFSPYETPDVMGALTSLKMTADFILQSDGL 55 (85)
T ss_dssp CCCEEECCBCTTTHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred ceEEEecccCHHHHHHHHHHHHHcCceEEEEECCCce
Confidence 4678899999999999999999999987788877764
No 25
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=33.64 E-value=22 Score=31.92 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=34.6
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHH
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE 64 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLe 64 (287)
.++=+.|-||.|+.| ++...|..+|..|.+|+.-..+ +..+..+.|.
T Consensus 17 ~i~~~sgkGGvGKTt--~a~~lA~~la~~g~~vllid~D---~~~~l~~~l~ 63 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTT--TSCSLAIQLAKVRRSVLLLSTD---PAHNLSDAFS 63 (334)
T ss_dssp CEEEEECSTTSSHHH--HHHHHHHHHTTSSSCEEEEECC---SSCHHHHHHT
T ss_pred EEEEEeCCCCccHHH--HHHHHHHHHHhCCCcEEEEECC---CCCChhHHhc
Confidence 344466889999987 6777888889999999998877 3444555553
No 26
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=33.11 E-value=16 Score=32.57 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=29.8
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~ 51 (287)
++|=|.|=||.|+.| ++.=+|..||..|.+|+.-..+
T Consensus 49 KVIAIaGKGGVGKTT--tavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 49 KVFAVYGKGGIGKST--TSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp EEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEEES
T ss_pred eEEEEECCCccCHHH--HHHHHHHHHHHCCCeEEEEecC
Confidence 567788999999986 3444677789999999998766
No 27
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=31.63 E-value=18 Score=32.16 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=27.9
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCC
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS 52 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~ 52 (287)
+=+.|.||.|+.| ++...|..+|+.|.+|+.--.+.
T Consensus 17 ~v~sgKGGvGKTT--vA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 17 VFIGGKGGVGKTT--ISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp EEEEESTTSSHHH--HHHHHHHHHHHTTCCEEEEECCS
T ss_pred EEEeCCCCchHHH--HHHHHHHHHHHCCCcEEEEeCCC
Confidence 3356779999987 67778888899999998866543
No 28
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=31.58 E-value=19 Score=34.80 Aligned_cols=38 Identities=26% Similarity=0.323 Sum_probs=29.6
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~ 51 (287)
..++=+.|.||.|+.| ++...|..+|+.|.+|+.-..+
T Consensus 8 ~~i~~~sgkGGvGKTT--~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTS--ISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEeCCCcCHHHH--HHHHHHHHHHHCCCcEEEEECC
Confidence 3444467999999987 6777888899999999985444
No 29
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=31.13 E-value=19 Score=32.38 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=26.8
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~ 51 (287)
+.|-||.|+.| ++...|..+|..|.+|+.-..+
T Consensus 31 ~sgKGGvGKTT--vA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 31 FGGKGGVGKTT--MSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp EECSSSTTHHH--HHHHHHHHHHHSSCCEEEEECC
T ss_pred EeCCCCccHHH--HHHHHHHHHHHCCCeEEEEeCC
Confidence 56779999987 6777888889999999886654
No 30
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=30.84 E-value=38 Score=30.56 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCcceeeC-CCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023127 12 GDAVDIVG-TGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (287)
Q Consensus 12 ~~~~D~~g-tggdG~~t~nis~~aa~llA~~G~~V~kHG~~ 51 (287)
..+|=+.+ -||.|+.| ++...|..+|..|.+|+.--.+
T Consensus 143 ~kvIav~s~KGGvGKTT--~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTST--VAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHH--HHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHH--HHHHHHHHHHhCCCCEEEEECC
Confidence 34565665 68889886 5666777788889999987765
No 31
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=30.23 E-value=12 Score=30.92 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=25.7
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~ 51 (287)
+.|-||.|+.| ++...|..+|+.|.+|+.-=.+
T Consensus 5 vs~kGGvGKTt--~a~~LA~~la~~g~~VlliD~D 37 (254)
T 3kjh_A 5 VAGKGGVGKTT--VAAGLIKIMASDYDKIYAVDGD 37 (254)
T ss_dssp EECSSSHHHHH--HHHHHHHHHTTTCSCEEEEEEC
T ss_pred EecCCCCCHHH--HHHHHHHHHHHCCCeEEEEeCC
Confidence 35789999986 5677788889999999875433
No 32
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=29.47 E-value=21 Score=29.11 Aligned_cols=29 Identities=28% Similarity=0.259 Sum_probs=22.7
Q ss_pred eeCC-CCCCCCCccchHHHHHHHHhCCCcEEe
Q 023127 17 IVGT-GGDGANTVNISTGASILAAACGAKVAK 47 (287)
Q Consensus 17 ~~gt-ggdG~~t~nis~~aa~llA~~G~~V~k 47 (287)
++++ ||.|+.| ++.-.|..+|+.|.+|+.
T Consensus 6 v~s~kgGvGKTt--~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 6 VTGTDTEVGKTV--ASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEESSTTSCHHH--HHHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCHHH--HHHHHHHHHHHCCCCEEE
Confidence 5555 7888876 566778888999999986
No 33
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=28.80 E-value=2.8e+02 Score=23.99 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=50.7
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHH-hCCCcEEeecCCCCCCcCCHHHHHHH----cCCCC--CCCHHHHHHH---H
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAA-ACGAKVAKQGSRSSSSACGSADVLEA----LGVVI--DLDPEGVRRC---V 81 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA-~~G~~V~kHG~~~~~~~~Gs~dvLea----LGi~~--~~s~e~~~~~---l 81 (287)
+.++=++|.+|.|+.| .....|..++ ..|.+|..-+.+. .+.+..+-|+. +|+++ ..++.+.... +
T Consensus 105 g~vi~lvG~~GsGKTT--l~~~LA~~l~~~~G~~V~lv~~D~--~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~ 180 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTT--TLAKLAAISMLEKHKKIAFITTDT--YRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF 180 (296)
T ss_dssp SSEEEEEESTTSSHHH--HHHHHHHHHHHTTCCCEEEEECCC--SSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG
T ss_pred CcEEEEECCCCCCHHH--HHHHHHHHHHHhcCCEEEEEecCc--ccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh
Confidence 4567789999999864 2222333445 4799998877654 34455555544 46655 2445554443 3
Q ss_pred HhcCeEEEeCCccchhh
Q 023127 82 DEAGIGFMMSTKYHPAM 98 (287)
Q Consensus 82 ~~~g~~fl~~~~~~P~l 98 (287)
.+..+.++..+-..|..
T Consensus 181 ~~~dlvIiDT~G~~~~~ 197 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKD 197 (296)
T ss_dssp GGSSEEEEECCCCCTTS
T ss_pred cCCCEEEEeCCCCChhh
Confidence 56678888876666554
No 34
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=28.17 E-value=23 Score=29.88 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=25.0
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeecC
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGS 50 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~ 50 (287)
+.+-||.|+.| ++.-.|..+|..|.+|+.--.
T Consensus 6 vs~KGGvGKTT--~a~nLA~~la~~G~~VlliD~ 37 (269)
T 1cp2_A 6 IYGKGGIGKST--TTQNLTSGLHAMGKTIMVVGC 37 (269)
T ss_dssp EEECTTSSHHH--HHHHHHHHHHTTTCCEEEEEE
T ss_pred EecCCCCcHHH--HHHHHHHHHHHCCCcEEEEcC
Confidence 45789999987 566677788899999997443
No 35
>3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A*
Probab=27.34 E-value=1.5e+02 Score=26.45 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=41.6
Q ss_pred cceeeCCCCCCCC--CccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCC----------CCCHHHHHHHH
Q 023127 14 AVDIVGTGGDGAN--TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI----------DLDPEGVRRCV 81 (287)
Q Consensus 14 ~~D~~gtggdG~~--t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~----------~~s~e~~~~~l 81 (287)
+| .+|..|.... +..+.-..+-+....|.||..|-.++-... -..++|+..|++. ..+++++.+.+
T Consensus 157 ~I-Eigld~~~~~~~q~~~f~aq~~lA~~~glPViiH~~~gr~a~-~~~~iL~~~~~~~~~~vi~H~~~~~~~e~a~~~l 234 (339)
T 3gtx_A 157 VI-KLASSRDAITPYEQLFFRAAARVQRETGVPIITHTQEGQQGP-QQAELLTSLGADPARIMIGHMDGNTDPAYHRETL 234 (339)
T ss_dssp EE-EEECCSSCCCHHHHHHHHHHHHHHHHHCCCEEEECSTTCCHH-HHHHHHHHTTCCGGGEEECCGGGCCCHHHHHHHH
T ss_pred eE-EEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCcCHH-HHHHHHHHcCCCcccEEEEccCCCCCHHHHHHHH
Confidence 45 6677765333 444566666677778999999987642221 2467777766542 24466666666
Q ss_pred Hh
Q 023127 82 DE 83 (287)
Q Consensus 82 ~~ 83 (287)
+.
T Consensus 235 ~~ 236 (339)
T 3gtx_A 235 RH 236 (339)
T ss_dssp TT
T ss_pred Hc
Confidence 54
No 36
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=26.84 E-value=69 Score=24.65 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=25.3
Q ss_pred eChhhHHHHHHHHHHcCCCeEEEEec-CCcc
Q 023127 134 YNENLVLKMANALQRFGLKRALVVHS-EGLD 163 (287)
Q Consensus 134 ~h~~~~~~~~~~~~~lg~~~~lvv~G-eG~d 163 (287)
-|+++.+.+.+.++..|...+.|++| +|.-
T Consensus 23 ~g~pL~~~Iv~~a~~~GiaGaTV~rgi~GfG 53 (127)
T 2dcl_A 23 EGRPLYKVIVEKLREMGIAGATVYRGIYGFG 53 (127)
T ss_dssp TTEEHHHHHHHHHHHTTCSCEEEEECSEEEC
T ss_pred CCcCHHHHHHHHHHHCCCCeEEEEcCcEEEC
Confidence 36778888899999999999999998 7743
No 37
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=26.70 E-value=3.8e+02 Score=24.75 Aligned_cols=135 Identities=13% Similarity=0.058 Sum_probs=76.8
Q ss_pred ceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCC---------CCc--CCHHHHHHHc----CCCCCCCHHHHHH
Q 023127 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS---------SSA--CGSADVLEAL----GVVIDLDPEGVRR 79 (287)
Q Consensus 15 ~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~---------~~~--~Gs~dvLeaL----Gi~~~~s~e~~~~ 79 (287)
|-+.|+|| |-+..|..+|..|.+|....-+.- .+. -|..++++.. ++.++.++++
T Consensus 11 ~~vIGlG~-------vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~e--- 80 (446)
T 4a7p_A 11 IAMIGTGY-------VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAE--- 80 (446)
T ss_dssp EEEECCSH-------HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHH---
T ss_pred EEEEcCCH-------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHH---
Confidence 56789998 667888999999999987653321 111 2455555441 2455556554
Q ss_pred HHHhcCeEEEeCCccc---hhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHcCC-CeEE
Q 023127 80 CVDEAGIGFMMSTKYH---PAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL-KRAL 155 (287)
Q Consensus 80 ~l~~~g~~fl~~~~~~---P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~lg~-~~~l 155 (287)
.+++..+.|+..|.=. -.--.+-.+|.. ...+.+.++|-. -....+-..|...+.+.+.++..+. ..+-
T Consensus 81 a~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v------~~~i~~~l~~g~-iVV~~STv~pgtt~~l~~~l~e~~~~~d~~ 153 (446)
T 4a7p_A 81 GVKDADAVFIAVGTPSRRGDGHADLSYVFAA------AREIAENLTKPS-VIVTKSTVPVGTGDEVERIIAEVAPNSGAK 153 (446)
T ss_dssp HHTTCSEEEECCCCCBCTTTCCBCTHHHHHH------HHHHHHSCCSCC-EEEECSCCCTTHHHHHHHHHHHHSTTSCCE
T ss_pred HHhcCCEEEEEcCCCCccccCCccHHHHHHH------HHHHHHhcCCCC-EEEEeCCCCchHHHHHHHHHHHhCCCCCce
Confidence 4567889988864421 001123334432 245556665521 1222233567888888887776542 2355
Q ss_pred EEec-CCccccc
Q 023127 156 VVHS-EGLDEMS 166 (287)
Q Consensus 156 vv~G-eG~dE~s 166 (287)
|+.| +...|-+
T Consensus 154 v~~~Pe~a~eG~ 165 (446)
T 4a7p_A 154 VVSNPEFLREGA 165 (446)
T ss_dssp EEECCCCCCTTS
T ss_pred EEeCcccccccc
Confidence 6666 6655554
No 38
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=26.63 E-value=23 Score=31.98 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=27.5
Q ss_pred eeCCCCCCCCCccchHHHHHHHH--hCCCcEEeecCCC
Q 023127 17 IVGTGGDGANTVNISTGASILAA--ACGAKVAKQGSRS 52 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA--~~G~~V~kHG~~~ 52 (287)
+.|-||.|+.| ++...|..+| +.|.+|+.-..+-
T Consensus 23 ~sgKGGvGKTT--vaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 23 VGGKGGVGKTT--SSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp EEESTTSSHHH--HHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred EeCCCCCcHHH--HHHHHHHHHHHhcCCCeEEEEECCC
Confidence 55779999986 6778888899 9999999876553
No 39
>3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A*
Probab=26.49 E-value=57 Score=29.70 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=41.3
Q ss_pred CcceeeCCCCCCCC--CccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCC----------CCCHHHHHHH
Q 023127 13 DAVDIVGTGGDGAN--TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI----------DLDPEGVRRC 80 (287)
Q Consensus 13 ~~~D~~gtggdG~~--t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~----------~~s~e~~~~~ 80 (287)
.+| .+|+++++-+ +.-+.-..+-+....|.||..|-.++-... -..++|+.-|++. ..+++++.+.
T Consensus 152 G~i-kig~s~~~~t~~Q~~~f~aq~~~A~e~glPViiH~r~gr~a~-d~l~iL~e~g~~~~~vvi~H~~~~~~~~~a~~~ 229 (363)
T 3ovg_A 152 GII-KAGTGYGAIDRLELKALEVAARTSILTGCPILVHTQLGTMAL-EVAKHLIGFGANPDKIQISHLNKNPDKYYYEKV 229 (363)
T ss_dssp CEE-EEEEEETBEEHHHHHHHHHHHHHHHHHCCCEEEEEETTCSHH-HHHHHHHHHTCCGGGEEEECGGGSCCHHHHHHH
T ss_pred CEE-EEEeCCCCCCHHHHHHHHHHHHHHHHhCCEEEEeCCCCCCHH-HHHHHHHhcCCCCCcEEEEcCCCCCCHHHHHHH
Confidence 456 4676664332 334566677777778999999976432111 2456666656652 1245666666
Q ss_pred HHhcC
Q 023127 81 VDEAG 85 (287)
Q Consensus 81 l~~~g 85 (287)
+++.|
T Consensus 230 l~~~G 234 (363)
T 3ovg_A 230 IKETG 234 (363)
T ss_dssp HHHHC
T ss_pred HHHCC
Confidence 63445
No 40
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=26.03 E-value=50 Score=29.82 Aligned_cols=59 Identities=17% Similarity=0.059 Sum_probs=41.2
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHH-HcCCCCC
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLE-ALGVVID 71 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLe-aLGi~~~ 71 (287)
-++|+-||=++|...++=..-+--.|.+.|++++.--|.+-.+..-.++.|. .||+++.
T Consensus 16 ~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~ 75 (352)
T 3kc2_A 16 FAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVS 75 (352)
T ss_dssp EEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCC
T ss_pred EEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCC
Confidence 3689999989888755433334445677899999888776444444566666 7999764
No 41
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=25.71 E-value=38 Score=30.55 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=33.8
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHH--hCCCcEEeecCCCCCCcCCHHHHH
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAA--ACGAKVAKQGSRSSSSACGSADVL 63 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA--~~G~~V~kHG~~~~~~~~Gs~dvL 63 (287)
.++=+.|-||.|+.| ++...|..+| ..|.+|+.-..+ +.....+.|
T Consensus 19 ~i~~~~gkGGvGKTt--~a~~lA~~la~~~~g~~vllid~D---~~~~l~~~~ 66 (348)
T 3io3_A 19 KWIFVGGKGGVGKTT--TSSSVAVQLALAQPNEQFLLISTD---PAHNLSDAF 66 (348)
T ss_dssp SEEEEECSTTSSHHH--HHHHHHHHHHHHCTTSCEEEEECC---SSCHHHHHH
T ss_pred EEEEEeCCCCCcHHH--HHHHHHHHHHHhcCCCeEEEEECC---CCCChHHHh
Confidence 445467889999987 6777778888 899999998876 233445544
No 42
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=25.39 E-value=35 Score=25.60 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.8
Q ss_pred cCCCCCHHHHHHHHHHHHHccH
Q 023127 239 SCKVNTLAEGVALAREIQLSGK 260 (287)
Q Consensus 239 ~G~~~s~~eg~~~A~~~l~sG~ 260 (287)
.|...+++||++.|++.|..|+
T Consensus 18 ~gw~~~~EeALe~ar~~L~~g~ 39 (116)
T 2gdt_A 18 RGFGDSVEEALSEAREHLKNGT 39 (116)
T ss_dssp CCSCSSHHHHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHhhcCC
Confidence 3566789999999999998886
No 43
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A
Probab=25.07 E-value=87 Score=25.45 Aligned_cols=58 Identities=19% Similarity=0.035 Sum_probs=36.7
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~ 71 (287)
++|+-||=.|+.+.++-..-+--.+.+.|++++.-.++.-.+.....+.|+.+|++..
T Consensus 11 ~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~~g~~~~ 68 (259)
T 2ho4_A 11 LVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKLEFEIS 68 (259)
T ss_dssp EEESSSSSCC---CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHHTTCCCC
T ss_pred EEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHHcCCCcc
Confidence 5788888777666544333333456778999987766654444456788888898754
No 44
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=25.01 E-value=44 Score=27.99 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=37.2
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~ 70 (287)
++|+-||=+++...++-+.-+---+.+.|++++.-.||+..+.....+.|+.+|++.
T Consensus 5 ~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~ 61 (263)
T 1zjj_A 5 IFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV 61 (263)
T ss_dssp EEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC
T ss_pred EEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC
Confidence 467778877776644333223333456799999888887555555566677789874
No 45
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=24.08 E-value=30 Score=29.71 Aligned_cols=31 Identities=35% Similarity=0.443 Sum_probs=24.4
Q ss_pred eeCCCCCCCCCccchHHHHHHHHhCCCcEEeec
Q 023127 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQG 49 (287)
Q Consensus 17 ~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG 49 (287)
+.+-||.|+.| ++.-.|..+|+.|.+|+.-=
T Consensus 7 vs~KGGvGKTT--~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 7 IYGKGGIGKST--TTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp EEECTTSSHHH--HHHHHHHHHHHTTCCEEEEE
T ss_pred EeCCCcCcHHH--HHHHHHHHHHHCCCeEEEEe
Confidence 45789999987 56667778888999999643
No 46
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=55 Score=22.53 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=24.9
Q ss_pred cCCHHHHHHHcCCCCCCCHHHHHHHHHhc
Q 023127 56 ACGSADVLEALGVVIDLDPEGVRRCVDEA 84 (287)
Q Consensus 56 ~~Gs~dvLeaLGi~~~~s~e~~~~~l~~~ 84 (287)
..+..|.++-||++...+.+++++.+.+.
T Consensus 5 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l 33 (82)
T 2ej7_A 5 SSGMVDYYEVLDVPRQASSEAIKKAYRKL 33 (82)
T ss_dssp CSSSCCHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCHHHHcCCCCCCCHHHHHHHHHHH
Confidence 34567899999999999999999998875
No 47
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=22.37 E-value=33 Score=27.31 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=23.9
Q ss_pred CCCCCCCCCccchHHHHHHHHhCCCcEEeecCC
Q 023127 19 GTGGDGANTVNISTGASILAAACGAKVAKQGSR 51 (287)
Q Consensus 19 gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~ 51 (287)
+.||.|+.| ++...|..+|..|.+|+.--.+
T Consensus 9 ~kgG~GKTt--~a~~la~~la~~g~~vlliD~D 39 (206)
T 4dzz_A 9 PKGGSGKTT--AVINIATALSRSGYNIAVVDTD 39 (206)
T ss_dssp SSTTSSHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCccHHH--HHHHHHHHHHHCCCeEEEEECC
Confidence 458888876 5667778888999999976554
No 48
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Probab=21.79 E-value=89 Score=25.77 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=34.7
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHH-cCCCC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEA-LGVVI 70 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLea-LGi~~ 70 (287)
++|+-||=.|+...++-..-+--.+.+.|+++..-.++...+.....+.|.. +|++.
T Consensus 9 ~fDlDGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~~~~~~~~l~~~~g~~~ 66 (264)
T 1yv9_A 9 LIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHV 66 (264)
T ss_dssp EECCBTTTEETTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCC
T ss_pred EEeCCCeEEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHhcCCCC
Confidence 5788888777665543121122346688999987777665444334444445 88875
No 49
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=21.68 E-value=40 Score=28.09 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=38.7
Q ss_pred cceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCCC
Q 023127 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (287)
Q Consensus 14 ~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~~ 71 (287)
++|+-||=.++.+.++-+.-+---+.+.|++|+.=-||+.-+..+..+.|+.+|+++.
T Consensus 10 ~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~~~ 67 (266)
T 3pdw_A 10 LIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPAT 67 (266)
T ss_dssp EEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCCCC
T ss_pred EEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 5788888666543322222223345567999998877765566678899999998754
No 50
>3pf6_A Hypothetical protein PP-LUZ7_GP033; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.60A {Pseudomonas phage LUZ7}
Probab=21.55 E-value=66 Score=20.97 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Q 023127 242 VNTLAEGVALAREIQLSGKALNTLDLWIEVSKIC 275 (287)
Q Consensus 242 ~~s~~eg~~~A~~~l~sG~a~~~l~~~~~~~~~~ 275 (287)
-.|.+||++.|+-++-.|.--+..+.+..+.+..
T Consensus 19 h~s~k~aleear~l~pggshhdfmra~mgyhntl 52 (62)
T 3pf6_A 19 HPSTKDALEEARLLFPGGTHHDFMRALMGYHNTL 52 (62)
T ss_dssp CSSHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCCchHHHHHHHHhhhHHH
Confidence 3577788888888877777777777777666653
No 51
>3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0
Probab=21.13 E-value=1.6e+02 Score=26.20 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=42.7
Q ss_pred cceeeCCCCCCCC--CccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCC----------CCCHHHHHHHH
Q 023127 14 AVDIVGTGGDGAN--TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI----------DLDPEGVRRCV 81 (287)
Q Consensus 14 ~~D~~gtggdG~~--t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~----------~~s~e~~~~~l 81 (287)
+| -+|+.|+..+ +..+.-..+-+....|.||..|-.++- ...-..++|+.-|++. ..+++++.+.+
T Consensus 152 vI-EiGld~~~~~~~q~~~f~aq~~~A~~~glPViiH~r~g~-~a~~~l~iL~e~~~~~~~vvi~H~~~s~~~e~a~~~l 229 (330)
T 3pnz_A 152 QV-KFGTGYNMITPLEEKTIRAVARAHHETKAPIHSHTEAGT-MALEQIEILKQENIPLEYLSIGHMDRNLDPYYHKQVA 229 (330)
T ss_dssp EE-EEECBTTBCCHHHHHHHHHHHHHHHHHCCCEEEECGGGC-CHHHHHHHHHHTTCCGGGEEETTGGGSCCHHHHHHHH
T ss_pred eE-EEEcCCCCCCHHHHHHHHHHHHHHHHHCCeEEEeCCCCc-ChHHHHHHHHHcCCCCCeEEEecCCCCCCHHHHHHHH
Confidence 46 5688775444 445666777777788999999976531 1112467777767642 23456666665
Q ss_pred Hh
Q 023127 82 DE 83 (287)
Q Consensus 82 ~~ 83 (287)
+.
T Consensus 230 ~~ 231 (330)
T 3pnz_A 230 KT 231 (330)
T ss_dssp TT
T ss_pred Hc
Confidence 54
No 52
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=21.04 E-value=76 Score=26.27 Aligned_cols=58 Identities=17% Similarity=-0.038 Sum_probs=38.3
Q ss_pred CcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHHHHHHcCCCC
Q 023127 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI 70 (287)
Q Consensus 13 ~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~dvLeaLGi~~ 70 (287)
-++|+-||=.|+.+-.+-+.-+.-.+.+.|++++.-.|++--+.....+.++.+|++.
T Consensus 20 v~~DlDGTLl~~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~~ 77 (271)
T 1vjr_A 20 FILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDV 77 (271)
T ss_dssp EEECCBTTTEETTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCC
T ss_pred EEEcCcCcEEeCCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 3688888877764422222222223678899999888775444556788899999875
No 53
>1j3m_A The conserved hypothetical protein TT1751; X-RAY crystallography, structural genomics, riken structural genomics/proteomics initiative; 2.00A {Thermus thermophilus} SCOP: d.129.7.1
Probab=20.82 E-value=65 Score=24.32 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHhcCeEEEeCCccchhhhhhHHHHhhhCCCChhHhhhhccCCCCCCceEEeeeChhhHHHHHHHHHHc
Q 023127 70 IDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (287)
Q Consensus 70 ~~~s~e~~~~~l~~~g~~fl~~~~~~P~l~~l~~lR~~Lg~Rt~~ntl~~LlNP~~~~~~v~Gv~h~~~~~~~~~~~~~l 149 (287)
++...+.+++.+++.||..+..-++.. .+++++|+. ..++.++++.+|++...+-+.-...
T Consensus 12 ~~e~~~~l~~al~~~Gf~v~~~id~~~------~l~~k~g~~-------------~~~~~il~~cnP~~a~~~l~~~p~~ 72 (129)
T 1j3m_A 12 LAEARAQVEAALKEEGFGILTEIDVAA------TLKAKLGLE-------------KPPYLILGACNPNLAARALEALPEI 72 (129)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEHHH------HHHHHHCCC-------------CCCEEEEEEECHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCHHH------HHHHhcCCC-------------CCCeEEEEECCHHHHHHHHHhCHHH
Confidence 334456788889999999876543322 345566631 1368999999999987776655444
Q ss_pred C
Q 023127 150 G 150 (287)
Q Consensus 150 g 150 (287)
|
T Consensus 73 g 73 (129)
T 1j3m_A 73 G 73 (129)
T ss_dssp G
T ss_pred H
Confidence 4
No 54
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.25 E-value=3.6e+02 Score=23.27 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=47.9
Q ss_pred CCcceeeCCCCCCCCCccchHHHHHHHHhCCCcEEeecCCCCCCcCCHHH----HHHHcCCCCC-----CCHHHH----H
Q 023127 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSAD----VLEALGVVID-----LDPEGV----R 78 (287)
Q Consensus 12 ~~~~D~~gtggdG~~t~nis~~aa~llA~~G~~V~kHG~~~~~~~~Gs~d----vLeaLGi~~~-----~s~e~~----~ 78 (287)
+.++=++|.+|.|+.| .....|..++..|.+|..-+.+-. +.++.+ ..+..|+++- .++.++ .
T Consensus 98 ~~vi~i~G~~G~GKTT--~~~~la~~~~~~g~~v~l~~~D~~--r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTT--TAGKLAYFYKKKGFKVGLVGADVY--RPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTH--HHHHHHHHHHHTTCCEEEEECCCS--SSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHHHHHHHCCCeEEEEecCCC--CHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 4456678999999975 233455556778999998876542 333333 3445677542 245433 2
Q ss_pred HHH--HhcCeEEEeCCccch
Q 023127 79 RCV--DEAGIGFMMSTKYHP 96 (287)
Q Consensus 79 ~~l--~~~g~~fl~~~~~~P 96 (287)
+.+ +...+.++..|-...
T Consensus 174 ~~~~~~~~D~ViIDTpg~~~ 193 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTAGRHG 193 (297)
T ss_dssp HHHHHTTCSEEEEECCCSCC
T ss_pred HHHHhCCCCEEEEeCCCCcc
Confidence 333 344678888854443
Done!