BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023129
         (287 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NUR|A Chain A, Crystal Structure Of A Putative Amidohydrolase From
           Staphylococcus Aureus
          Length = 357

 Score = 28.5 bits (62), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 15  FSSPFAVTPSSKLTFPNYSSPRRRIGLSTV--ACTYVALSSKGQGAFDPEL 63
           F + F +TPS  LT P +   ++ +G+  +  A  Y  +  +  G F  EL
Sbjct: 282 FKNSFYITPSGXLTKPQFDLVKKEVGIDRILYAADYPYIEPEKLGVFLDEL 332


>pdb|3K3W|A Chain A, Thermostable Penicillin G Acylase From Alcaligenes
           Faecalis In Orthorhombic Form
          Length = 196

 Score = 28.1 bits (61), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 106 IEQDLEEREDFI-ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRK 151
           ++ D++ R++F  AS++ +   L+ D R   RG+   Y   L  VR+
Sbjct: 65  VKYDMQVRQNFTPASIQRQIAALSKDERDIFRGYADGYNAYLEQVRR 111


>pdb|3ML0|A Chain A, Thermostable Penicillin G Acylase From Alcaligenes
           Faecalis In Tetragonal Form
          Length = 195

 Score = 28.1 bits (61), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 106 IEQDLEEREDFI-ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRK 151
           ++ D++ R++F  AS++ +   L+ D R   RG+   Y   L  VR+
Sbjct: 65  VKYDMQVRQNFTPASIQRQIAALSKDERDIFRGYADGYNAYLEQVRR 111


>pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4
          Length = 540

 Score = 27.7 bits (60), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 202 LELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSGKFFLEAANYQIKKEVL 253
           L+L L QW+ + L          K+++L     L    F+E    Q+KK+VL
Sbjct: 4   LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVL 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,477,859
Number of Sequences: 62578
Number of extensions: 272263
Number of successful extensions: 688
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 9
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)