BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023129
         (287 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P48676|PERI_XENLA Peripherin OS=Xenopus laevis GN=prph PE=2 SV=1
          Length = 456

 Score = 33.1 bits (74), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 178 YASEESGVFPGSWENSEASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLKLMRNLSG 237
           Y S+ + +   +  NSEA   Q   ++  S+ ++Q+L     G       +L+ M+N+  
Sbjct: 277 YKSKFADLSDAANRNSEAL-RQAKQDMNESRRQIQSLTCEVDGLKGTNEALLRQMKNMEE 335

Query: 238 KFFLEAANYQ 247
           +F +EAANYQ
Sbjct: 336 QFGMEAANYQ 345


>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis
           GN=slc36a4 PE=2 SV=1
          Length = 522

 Score = 32.0 bits (71), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 38  RIGLSTVACTYVALSSKGQGAFDPELRS--VLELATDSELYELERILF 83
            IG++ V   Y++L++ G   F  +++    L L  DS LY+L +IL+
Sbjct: 328 NIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSWLYQLVKILY 375


>sp|P40477|NU159_YEAST Nucleoporin NUP159 OS=Saccharomyces cerevisiae (strain ATCC 204508
           / S288c) GN=NUP159 PE=1 SV=1
          Length = 1460

 Score = 31.6 bits (70), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 28/55 (50%)

Query: 7   TFLVLQPSFSSPFAVTPSSKLTFPNYSSPRRRIGLSTVACTYVALSSKGQGAFDP 61
           TFL  QP+ ++      SS    P++ S   +I L +V+ T   ++S  Q A DP
Sbjct: 444 TFLKTQPAAANSLQSQSSSTFGAPSFGSSAFKIDLPSVSSTSTGVASSEQDATDP 498


>sp|Q8SUE5|YA88_ENCCU Uncharacterized membrane protein ECU10_0880 OS=Encephalitozoon
           cuniculi (strain GB-M1) GN=ECU10_0880 PE=1 SV=1
          Length = 306

 Score = 31.6 bits (70), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 25/136 (18%)

Query: 88  FSPLLKSFTKRADVD-YVMIEQDLEEREDFIASLESRFLFLAADARST-LRGWRPSYRNV 145
           F+ +L+SF K+A+ D YV +E+D  ER+            +  D R T L G     R V
Sbjct: 6   FADVLRSFEKKAEDDEYVSVERDYNERK-----------VIENDVRRTELLGVDKRNRKV 54

Query: 146 LLAVRKNL-----NIPCSSKLSTEDLEAEIFLHLLQEYASEE--SGVFP-GSWENSEASD 197
           +  +++ L      IP        ++ +   L+  Q    EE   GV   GS E S    
Sbjct: 55  IKVLKRLLFVELDKIPIKYTQGMSEIASVFVLYYFQNIVEEEVAKGVLASGSDEES---- 110

Query: 198 AQNSLELGLSQWKVQA 213
           A+ S   G S+  ++A
Sbjct: 111 AEESAADGFSEQFIEA 126


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,561,601
Number of Sequences: 539616
Number of extensions: 3534802
Number of successful extensions: 10290
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10288
Number of HSP's gapped (non-prelim): 14
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)