Query 023129
Match_columns 287
No_of_seqs 68 out of 70
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 08:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10236 hypothetical protein; 100.0 2.9E-35 6.4E-40 266.9 13.8 123 61-205 8-140 (237)
2 COG4735 Uncharacterized protei 99.8 4.5E-22 9.7E-27 178.3 2.1 111 116-261 23-136 (211)
3 COG4735 Uncharacterized protei 97.8 9.9E-06 2.2E-10 73.8 1.7 62 132-205 1-64 (211)
4 PF13099 DUF3944: Domain of un 96.3 0.004 8.7E-08 43.0 3.0 30 60-89 3-32 (35)
5 PF03981 Ubiq_cyt_C_chap: Ubiq 91.6 0.41 8.9E-06 39.0 5.2 52 116-197 5-57 (141)
6 PF03250 Tropomodulin: Tropomo 81.5 2.3 5.1E-05 37.6 4.3 31 53-83 109-139 (147)
7 PF04542 Sigma70_r2: Sigma-70 41.2 37 0.00081 23.4 3.2 33 142-177 5-37 (71)
8 PF01371 Trp_repressor: Trp re 41.2 43 0.00092 27.0 3.9 21 65-85 9-29 (87)
9 TIGR02989 Sig-70_gvs1 RNA poly 34.7 53 0.0011 26.3 3.5 35 141-178 9-43 (159)
10 PF02173 pKID: pKID domain; I 34.3 29 0.00063 25.1 1.7 13 138-150 18-30 (41)
11 PF11248 DUF3046: Protein of u 34.1 66 0.0014 24.9 3.7 44 115-158 5-62 (63)
12 PF12616 DUF3775: Protein of u 32.6 90 0.002 24.6 4.4 31 60-90 3-34 (75)
13 PF02836 Glyco_hydro_2_C: Glyc 29.9 31 0.00067 31.4 1.6 38 118-155 36-73 (298)
14 cd02642 R3H_encore_like R3H do 29.2 68 0.0015 23.7 3.0 43 115-157 3-48 (63)
15 PF02196 RBD: Raf-like Ras-bin 27.6 39 0.00084 25.7 1.5 32 128-159 8-40 (71)
16 cd06406 PB1_P67 A PB1 domain i 27.4 46 0.001 26.8 2.0 20 137-156 18-37 (80)
17 cd01915 CODH Carbon monoxide d 27.4 2.6E+02 0.0056 29.9 7.9 46 143-189 109-154 (613)
18 PF15008 DUF4518: Domain of un 27.1 1.1E+02 0.0023 29.4 4.7 89 61-179 7-95 (262)
19 PF07176 DUF1400: Alpha/beta h 25.8 88 0.0019 26.3 3.5 36 55-90 26-61 (127)
20 PF06603 UpxZ: UpxZ family of 24.8 1.5E+02 0.0032 25.3 4.6 56 117-179 5-64 (106)
21 PF04891 NifQ: NifQ; InterPro 23.8 72 0.0016 28.5 2.8 84 69-156 60-149 (167)
22 PRK09646 RNA polymerase sigma 22.7 4.7E+02 0.01 22.1 9.9 163 56-237 10-188 (194)
23 cd06134 RNaseT DEDDh 3'-5' exo 21.3 89 0.0019 27.1 2.8 33 145-177 151-188 (189)
24 PF15540 Toxin_62: Putative to 21.0 69 0.0015 27.5 1.9 23 135-157 15-37 (113)
25 PF00708 Acylphosphatase: Acyl 20.2 49 0.0011 25.5 0.9 23 134-156 9-33 (91)
No 1
>PRK10236 hypothetical protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=266.89 Aligned_cols=123 Identities=19% Similarity=0.315 Sum_probs=111.7
Q ss_pred hHHHHHHHhhChHHHHHHHHHhc-----CCCCCCcchhhhc-cc---CCcchhHHhhhhHHHHHHHHHHHHHHhccccch
Q 023129 61 PELRSVLELATDSELYELERILF-----GPSYFSPLLKSFT-KR---ADVDYVMIEQDLEEREDFIASLESRFLFLAADA 131 (287)
Q Consensus 61 dELr~~LELATdEEL~eLt~ILf-----~~r~fsPLLkSi~-kr---~~~Dy~~i~~~~~~R~~~i~~IEsRFqflAaD~ 131 (287)
|++.+||..|++|||.+|++||+ ..|+++.|+++.. ++ +.+||.+ ||+.||+||||||||+
T Consensus 8 D~DL~fL~~cs~edL~~Lv~~Lt~d~dG~~R~te~lt~~~~yk~~~~~~~~~~~----------yw~~Ia~elq~fGgnt 77 (237)
T PRK10236 8 DSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHRR----------NWQLIAGELQHFGGDS 77 (237)
T ss_pred CccHHHHHhCCHHHHHHHHHHHhcCCCCCEeehhhhcccHHHHhhcccchhHHH----------HHHHHHHHHHHhcchH
Confidence 34447999999999999999999 4577888888854 55 8999999 9999999999999999
Q ss_pred -hhhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhhhhhh
Q 023129 132 -RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELG 205 (287)
Q Consensus 132 -~tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~~~e~q~sl~~~ 205 (287)
+|+|||+||+|||||+|||+||||||++++||++||++||+|++++ +|+||+++| ++++...
T Consensus 78 ~~n~lRG~Gv~YreIL~DVc~~LKV~y~~~~st~~iE~~il~kll~~-----------a~~kms~eE-~~~L~~~ 140 (237)
T PRK10236 78 IANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQFLRN-----------TWKKMDEEH-KQEFLHA 140 (237)
T ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH-----------HHHHCCHHH-HHHHHHH
Confidence 5799999999999999999999999999999999999999999999 999999999 6666665
No 2
>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.84 E-value=4.5e-22 Score=178.29 Aligned_cols=111 Identities=15% Similarity=0.274 Sum_probs=99.0
Q ss_pred HHHHHHHHHhccccch-hhhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCC
Q 023129 116 FIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSE 194 (287)
Q Consensus 116 ~i~~IEsRFqflAaD~-~tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~ 194 (287)
|++.|++++|++++|+ +++|||.|+.||+||+|+|||||+||+++++|.+||++++++|+++ +|+||+
T Consensus 23 y~k~ia~elq~~gg~s~anflr~~G~lyk~il~d~~~~Lk~k~~k~~~tt~Iee~ll~~il~~-----------~l~km~ 91 (211)
T COG4735 23 YLKRIAEELQTTGGLSAANFLRDLGQLYKKILCDEKDKLKVKVQKELGTTEIEEPLLLQILRN-----------PLEKML 91 (211)
T ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhccccccchhHHHHHHh-----------HHHHHh
Confidence 8899999999999999 7999999999999999999999999999999999999999999999 999997
Q ss_pred chhhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHhhhccccc
Q 023129 195 ASDAQNSLELGLSQWKVQALAAFNAGAVELKSMMLK--LMRNLSGKFFLEAANYQIKKEVLKKVVDNWL 261 (287)
Q Consensus 195 ~~e~q~sl~~~L~~~~~~lla~lk~G~a~~vssvlk--L~k~la~q~al~~A~YQvake~l~~Gg~~~~ 261 (287)
..+ .+++++++.+ +.+ |.+++.+|+|.||+||.+..+|+...+
T Consensus 92 ~~~-----------------------~~e~~~~l~~~~v~~-i~e~~~vl~a~~l~ak~~~~~~S~qla 136 (211)
T COG4735 92 KGG-----------------------KAEAVDSLDAPNVLE-IEEQLQVLIADYLVAKKALGKGSYQLA 136 (211)
T ss_pred HHH-----------------------HHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 666 5667777776 444 888888888888888888888776554
No 3
>COG4735 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.77 E-value=9.9e-06 Score=73.81 Aligned_cols=62 Identities=24% Similarity=0.286 Sum_probs=55.7
Q ss_pred hhhhcCC--CchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhhhhhh
Q 023129 132 RSTLRGW--RPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNSLELG 205 (287)
Q Consensus 132 ~tvLRG~--gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~~~e~q~sl~~~ 205 (287)
+|++||+ .++||+-++||||++|++|..-+.|-+.|.+.|+|.+++ .|++.+..+ .+.|...
T Consensus 1 lt~~l~~~~~~k~r~g~~~~~ky~k~ia~elq~~gg~s~anflr~~G~-----------lyk~il~d~-~~~Lk~k 64 (211)
T COG4735 1 LTVLLGRSEQFKYREGLIQVCKYLKRIAEELQTTGGLSAANFLRDLGQ-----------LYKKILCDE-KDKLKVK 64 (211)
T ss_pred CchhhccchhhHHHhhHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH-----------HHHHcCHHH-HHHHHHH
Confidence 4788997 999999999999999999999999999999999999999 999999887 4445444
No 4
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=96.33 E-value=0.004 Score=43.03 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=25.2
Q ss_pred ChHHHHHHHhhChHHHHHHHHHhcCCCCCC
Q 023129 60 DPELRSVLELATDSELYELERILFGPSYFS 89 (287)
Q Consensus 60 ddELr~~LELATdEEL~eLt~ILf~~r~fs 89 (287)
-|+..+||..|++|+|.+|++||+.-+-.+
T Consensus 3 ~D~DLeFL~~cs~edL~~L~~~Lt~dkdG~ 32 (35)
T PF13099_consen 3 YDSDLEFLAECSNEDLKDLVDILTHDKDGK 32 (35)
T ss_pred cCcchHHHHHCCHHHHHHHHHHHhcCCCCC
Confidence 367889999999999999999999655343
No 5
>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase. It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.
Probab=91.64 E-value=0.41 Score=39.00 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccccch-hhhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCccccCC
Q 023129 116 FIASLESRFLFLAADA-RSTLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSE 194 (287)
Q Consensus 116 ~i~~IEsRFqflAaD~-~tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~ 194 (287)
..+.+++||++++... +...| ||..+ .+..++|++||.++.++ ++++|.
T Consensus 5 ~~dt~~~~f~~~~lh~~l~~~R----------------Lk~~~---~~~~~~~q~l~~~~~~d-----------~~~~l~ 54 (141)
T PF03981_consen 5 VPDTFAGRFQMLGLHVWLVLRR----------------LKAEG---KEGKELEQALFDKFFED-----------MDERLR 54 (141)
T ss_pred CccCHHHHHHHHHHHHHHHHHH----------------Hcccc---ccHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 4568999999999988 44444 77777 55699999999999999 888888
Q ss_pred chh
Q 023129 195 ASD 197 (287)
Q Consensus 195 ~~e 197 (287)
+.+
T Consensus 55 ~~g 57 (141)
T PF03981_consen 55 EMG 57 (141)
T ss_pred Hhc
Confidence 765
No 6
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=81.46 E-value=2.3 Score=37.56 Aligned_cols=31 Identities=45% Similarity=0.549 Sum_probs=27.1
Q ss_pred cCCCCCCChHHHHHHHhhChHHHHHHHHHhc
Q 023129 53 SKGQGAFDPELRSVLELATDSELYELERILF 83 (287)
Q Consensus 53 ~~~~~~~ddELr~~LELATdEEL~eLt~ILf 83 (287)
....-..++||.++|.-|||+||.+|+.||-
T Consensus 109 ~ee~v~ldpeleeaL~~Atd~El~dlAaILG 139 (147)
T PF03250_consen 109 KEEQVTLDPELEEALSNATDAELCDLAAILG 139 (147)
T ss_pred cccccccCHHHHHHHhcCcHHHHHHHHHHHh
Confidence 3445678899999999999999999999995
No 7
>PF04542 Sigma70_r2: Sigma-70 region 2 ; InterPro: IPR007627 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core-binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime [, ]. The aromatic residues of the recognition helix, found at the C terminus of this domain are thought to mediate strand separation, thereby allowing transcription initiation [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1OR7_B 1H3L_B 2Z2S_C 2Q1Z_C 2O7G_B 1SMY_F 1IW7_P 2BE5_F 2A6E_F 2CW0_F ....
Probab=41.17 E-value=37 Score=23.39 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhh
Q 023129 142 YRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (287)
Q Consensus 142 YReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~ 177 (287)
|...+..+|.+. ++.....+|+-+|.|+++++.
T Consensus 5 ~~~~l~~~~~~~---~~~~~~~eD~~qe~~~~l~~~ 37 (71)
T PF04542_consen 5 YYPLLYRYARRY---TGDPEDAEDLVQEAFIKLWRA 37 (71)
T ss_dssp THHHHHHHHHTC---TTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCHhhHHHHhhHHHHHHHhh
Confidence 667778888887 455579999999999999987
No 8
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=41.15 E-value=43 Score=27.02 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=11.5
Q ss_pred HHHHhhChHHHHHHHHHhcCC
Q 023129 65 SVLELATDSELYELERILFGP 85 (287)
Q Consensus 65 ~~LELATdEEL~eLt~ILf~~ 85 (287)
.++.+-+.||.++|-+-|..+
T Consensus 9 ~i~~l~~~ee~~~f~~dL~T~ 29 (87)
T PF01371_consen 9 AILSLKDEEECYDFFEDLCTP 29 (87)
T ss_dssp HHHCHHCHHCHHHHHHHHSSH
T ss_pred HHHHcCCHHHHHHHHHHhCCH
Confidence 344555566666665555443
No 9
>TIGR02989 Sig-70_gvs1 RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Probab=34.71 E-value=53 Score=26.29 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhh
Q 023129 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEY 178 (287)
Q Consensus 141 sYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ 178 (287)
.|+..|..+|.++.. .....+||.++.|+++++..
T Consensus 9 ~~~~~l~~~~~~~~~---~~~~aEDivQe~~l~l~~~~ 43 (159)
T TIGR02989 9 RHQRSLRAFVRSLVP---DRDDADDVLQETFVTAWRKF 43 (159)
T ss_pred HhHHHHHHHHHHHcC---ChhhHHHHHHHHHHHHHHHH
Confidence 477888888888854 45577999999999999873
No 10
>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner. CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.
Probab=34.31 E-value=29 Score=25.09 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=11.3
Q ss_pred CCchHHHHHHHHH
Q 023129 138 WRPSYRNVLLAVR 150 (287)
Q Consensus 138 ~gvsYReILldVC 150 (287)
+++|||.||-|+.
T Consensus 18 RRPSYRKIlndLs 30 (41)
T PF02173_consen 18 RRPSYRKILNDLS 30 (41)
T ss_dssp TSTHHHHHHHHHH
T ss_pred hCchHHHHHHHhc
Confidence 5999999999874
No 11
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=34.13 E-value=66 Score=24.91 Aligned_cols=44 Identities=30% Similarity=0.345 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhc-----cccch-hhhhcCC--------CchHHHHHHHHHhhcCcCCC
Q 023129 115 DFIASLESRFLF-----LAADA-RSTLRGW--------RPSYRNVLLAVRKNLNIPCS 158 (287)
Q Consensus 115 ~~i~~IEsRFqf-----lAaD~-~tvLRG~--------gvsYReILldVC~kLKV~ys 158 (287)
.||++++.+|=- ++.|- ++-|-|+ |+.=|+|=..||+-++||-+
T Consensus 5 eFw~~~~~~FG~~~~~~la~dhvL~~LGgrT~~eAL~~G~dpr~VW~AlC~~~dVP~~ 62 (63)
T PF11248_consen 5 EFWQLMEEEFGPAYGRSLARDHVLSELGGRTAAEALEAGVDPRDVWRALCDAFDVPEE 62 (63)
T ss_pred HHHHHHHHHhCchhHHHHHHhcchhhcCCcCHHHHHHcCCCHHHHHHHHHHHcCCCCC
Confidence 588888888843 33343 2444443 89999999999999999853
No 12
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=32.63 E-value=90 Score=24.62 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=27.4
Q ss_pred ChHHHHHHHhhChHHHHHHHHHhc-CCCCCCc
Q 023129 60 DPELRSVLELATDSELYELERILF-GPSYFSP 90 (287)
Q Consensus 60 ddELr~~LELATdEEL~eLt~ILf-~~r~fsP 90 (287)
-+||+.+++-.+++|..+|+.+.. ||-=|+|
T Consensus 3 ~~el~~~I~~l~~deqaeLvALmwiGRGd~~~ 34 (75)
T PF12616_consen 3 EEELRSFIEDLNEDEQAELVALMWIGRGDFEA 34 (75)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCH
Confidence 379999999999999999999998 7666666
No 13
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=29.86 E-value=31 Score=31.41 Aligned_cols=38 Identities=11% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHHHhccccchhhhhcCCCchHHHHHHHHHhhcCc
Q 023129 118 ASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNLNI 155 (287)
Q Consensus 118 ~~IEsRFqflAaD~~tvLRG~gvsYReILldVC~kLKV 155 (287)
+.++..++.+-.=++|.+|-+...+.+-.++.||++|+
T Consensus 36 ~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~Gi 73 (298)
T PF02836_consen 36 EAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGI 73 (298)
T ss_dssp HHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCC
Confidence 45667777777777999997766777889999999998
No 14
>cd02642 R3H_encore_like R3H domain of encore-like and DIP1-like proteins. Drosophila encore is involved in the germline exit after four mitotic divisions, by facilitating SCF-ubiquitin-proteasome-dependent proteolysis. Maize DBF1-interactor protein 1 (DIP1) containing an R3H domain is a potential regulator of DBF1 activity in stress responses. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=29.19 E-value=68 Score=23.67 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhccccch-hhhh--cCCCchHHHHHHHHHhhcCcCC
Q 023129 115 DFIASLESRFLFLAADA-RSTL--RGWRPSYRNVLLAVRKNLNIPC 157 (287)
Q Consensus 115 ~~i~~IEsRFqflAaD~-~tvL--RG~gvsYReILldVC~kLKV~y 157 (287)
.|+-.||..|.=|..|+ .+.+ ..-..-+|-++-+||++.++.-
T Consensus 3 ~~~l~~E~~i~~Fi~~~~~~~~~f~pm~sy~RllvH~la~~~gL~s 48 (63)
T cd02642 3 LFVLKLEKDLLAFIKDSTRQSLELPPMNSYYRLLAHRVAQYYGLDH 48 (63)
T ss_pred hHHHHHHHHHHHHHhCCCCCeeEcCCCCcHHHHHHHHHHHHhCCee
Confidence 58889999999999888 4443 3458899999999999988653
No 15
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=27.56 E-value=39 Score=25.67 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=22.5
Q ss_pred ccchhhhhcCC-CchHHHHHHHHHhhcCcCCCC
Q 023129 128 AADARSTLRGW-RPSYRNVLLAVRKNLNIPCSS 159 (287)
Q Consensus 128 AaD~~tvLRG~-gvsYReILldVC~kLKV~ys~ 159 (287)
=++..+++.=+ |.+.|++|..+|++-++++..
T Consensus 8 P~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~ 40 (71)
T PF02196_consen 8 PNGQRTVVQVRPGMTIRDALSKACKKRGLNPEC 40 (71)
T ss_dssp TTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCC
T ss_pred CCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHH
Confidence 34445555544 999999999999999998764
No 16
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=27.44 E-value=46 Score=26.76 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.7
Q ss_pred CCCchHHHHHHHHHhhcCcC
Q 023129 137 GWRPSYRNVLLAVRKNLNIP 156 (287)
Q Consensus 137 G~gvsYReILldVC~kLKV~ 156 (287)
..|++|.++.-.|++|||++
T Consensus 18 p~~~~y~~L~~ki~~kLkl~ 37 (80)
T cd06406 18 ARGLSYATLLQKISSKLELP 37 (80)
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999997
No 17
>cd01915 CODH Carbon monoxide dehydrogenase (CODH) is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA, respectively. CODH has two types of metal clusters, a cubane [Fe4-S4] center (B-cluster) similar to that of hybrid cluster protein (HCP) and a Ni-Fe-S center (C-cluster) where carbon monoxide oxidation occurs. Bifunctional CODH forms a heterotetramer with acetyl-CoA synthase (ACS) consisting of two CODH and two ACS subunits while monofunctional CODH forms a homodimer. Bifunctional CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP), while monofunctional CODH oxidizes carbon monoxide to carbon dioxide. CODH and ACS each have a metal cluster referred to as the C- and A-clusters, respectively.
Probab=27.42 E-value=2.6e+02 Score=29.95 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhhccccCCCCCc
Q 023129 143 RNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYASEESGVFPGS 189 (287)
Q Consensus 143 ReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~ss~~~g~~~~a 189 (287)
.+=|..||+.++|+.+. -+..||=.++=..+|++|.....+...+.
T Consensus 109 ~~KL~~~A~~~gi~t~g-~~~~eiA~~va~~~l~d~~~~~~~~~~~~ 154 (613)
T cd01915 109 EEKLKALAKRLGIDTEG-KSINEIAVEVAEIALEDFGRPREEPSRWV 154 (613)
T ss_pred HHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHHhcCCCCcchhhH
Confidence 37899999999999665 77899999999999999987655566665
No 18
>PF15008 DUF4518: Domain of unknown function (DUF4518)
Probab=27.10 E-value=1.1e+02 Score=29.40 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=63.5
Q ss_pred hHHHHHHHhhChHHHHHHHHHhcCCCCCCcchhhhcccCCcchhHHhhhhHHHHHHHHHHHHHHhccccchhhhhcCCCc
Q 023129 61 PELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRP 140 (287)
Q Consensus 61 dELr~~LELATdEEL~eLt~ILf~~r~fsPLLkSi~kr~~~Dy~~i~~~~~~R~~~i~~IEsRFqflAaD~~tvLRG~gv 140 (287)
..+|++|.+-++++|..|++.-|.+- ..| - +|+.=++. +.-+-.|+..+||. +.
T Consensus 7 ~G~rdlL~~l~~~~LlaL~~TVTn~~-i~~----------e----------~~~EAi~a----IL~~s~~a~~LL~r-kk 60 (262)
T PF15008_consen 7 EGCRDLLGLLDNDDLLALADTVTNRL-IKP----------E----------SRQEAIDA----ILLYSQDAEELLRR-KK 60 (262)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhcCc-eec----------C----------CHHHHHHH----HHHhCcCHHHHHhc-cc
Confidence 45899999999999999999999875 555 2 22222222 22345677788886 45
Q ss_pred hHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhh
Q 023129 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYA 179 (287)
Q Consensus 141 sYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~s 179 (287)
-+|+||...-..-+|..++.++-. .+..|.++-..
T Consensus 61 V~RelLFkYLa~kgv~v~p~s~K~----~LI~~~l~~W~ 95 (262)
T PF15008_consen 61 VKRELLFKYLASKGVIVPPDSEKA----DLIQRVLQYWS 95 (262)
T ss_pred ccHHHHHHHHHHcCCCCCCCccHH----HHHHHHHHHHh
Confidence 589999999999999888877754 45666666633
No 19
>PF07176 DUF1400: Alpha/beta hydrolase of unknown function (DUF1400); InterPro: IPR010802 This domain is specific to cyanobacterial proteins, its function and the function of the proteins it is associated with, are uncharacterised.
Probab=25.81 E-value=88 Score=26.25 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=32.9
Q ss_pred CCCCCChHHHHHHHhhChHHHHHHHHHhcCCCCCCc
Q 023129 55 GQGAFDPELRSVLELATDSELYELERILFGPSYFSP 90 (287)
Q Consensus 55 ~~~~~ddELr~~LELATdEEL~eLt~ILf~~r~fsP 90 (287)
..|..++||+..+.+.+.++.++|-++|..+=.++|
T Consensus 26 ~tG~~~~~L~~~~~ll~~~~~~~lr~~L~~~~~~~~ 61 (127)
T PF07176_consen 26 ETGEISPELAFYLNLLSPQQRQQLRELLNTPIPIDP 61 (127)
T ss_pred HcCCCCHHHHHHHHhcCHhhHHHHHHHHcCCCCCCH
Confidence 367889999999999999999999999998887877
No 20
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=24.84 E-value=1.5e+02 Score=25.30 Aligned_cols=56 Identities=29% Similarity=0.338 Sum_probs=38.8
Q ss_pred HHHHHHHHhccccchh----hhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhh
Q 023129 117 IASLESRFLFLAADAR----STLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYA 179 (287)
Q Consensus 117 i~~IEsRFqflAaD~~----tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~s 179 (287)
++.++-++.|+|.|+- .-|+. .=+ +|-.+-.-=|+.+-+|.|=|+++-+.+|--|+
T Consensus 5 L~~~ah~Ll~lG~dg~piYsD~~~r---LN~----ev~~~~~~Ly~~~G~t~EeeA~lCLaLLmGYn 64 (106)
T PF06603_consen 5 LQSLAHELLYLGMDGSPIYSDDFSR---LNK----EVYEQSNDLYSQHGSTPEEEANLCLALLMGYN 64 (106)
T ss_pred HHHHHHHHHhcCCCCCeeehHHHHH---HhH----HHHHHHHHHHhccCCCHHHHHHHHHHHHHhcc
Confidence 3467888999999983 22322 112 23333344588899999999999999997655
No 21
>PF04891 NifQ: NifQ; InterPro: IPR006975 NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co) [], which is an integral part of the active site of dinitrogenase []. The conserved C-terminal cysteine residues may be involved in metal binding [].; GO: 0030151 molybdenum ion binding, 0009399 nitrogen fixation
Probab=23.83 E-value=72 Score=28.53 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=58.0
Q ss_pred hhChHHHHHHHHHhc-CCCCCCc---chhhhc--ccCCcchhHHhhhhHHHHHHHHHHHHHHhccccchhhhhcCCCchH
Q 023129 69 LATDSELYELERILF-GPSYFSP---LLKSFT--KRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSY 142 (287)
Q Consensus 69 LATdEEL~eLt~ILf-~~r~fsP---LLkSi~--kr~~~Dy~~i~~~~~~R~~~i~~IEsRFqflAaD~~tvLRG~gvsY 142 (287)
..-++|-.+|.++|- +++...| -+-.+. .--++||.=.+-...+|+..-..+...|-=|++--..=+|.|...|
T Consensus 60 ~~~~~E~~~L~~LLl~h~~~~~~~~~wlA~iiA~~~l~~~HLWqDLGL~~R~eLs~Lm~r~Fp~Laa~N~~~MrWKKFfY 139 (167)
T PF04891_consen 60 PPRDDEEEDLRALLLAHRAGDDPEARWLAHIIARACLGPDHLWQDLGLRSRAELSALMRRHFPPLAARNTRNMRWKKFFY 139 (167)
T ss_pred cCCchHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHcCCCccHHhcCCCCHHHHHHHHHHHhHHHHHhccCCCcHHHHHH
Confidence 334555566666664 2222222 222222 2226788888888899999999999999999988777889899999
Q ss_pred HHHHHHHHhhcCcC
Q 023129 143 RNVLLAVRKNLNIP 156 (287)
Q Consensus 143 ReILldVC~kLKV~ 156 (287)
|| +|+.-++.
T Consensus 140 rq----lCe~eG~~ 149 (167)
T PF04891_consen 140 RQ----LCEREGLY 149 (167)
T ss_pred HH----HHHHcCCC
Confidence 98 57777765
No 22
>PRK09646 RNA polymerase sigma factor SigK; Reviewed
Probab=22.73 E-value=4.7e+02 Score=22.09 Aligned_cols=163 Identities=14% Similarity=0.143 Sum_probs=71.7
Q ss_pred CCCCChHHHHHHHhhChHHHHHHHHHhcCCCCCCcchhhhcccCCcchhHHhhhhHHHHHHHHHHHHHHhccccchhhhh
Q 023129 56 QGAFDPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTL 135 (287)
Q Consensus 56 ~~~~ddELr~~LELATdEEL~eLt~ILf~~r~fsPLLkSi~kr~~~Dy~~i~~~~~~R~~~i~~IEsRFqflAaD~~tvL 135 (287)
..+..+++.+.+..+.+.+-..++++.-. ..|++-.+..+.-.|+... +.=--+.|+...+..=.|=... .-+
T Consensus 10 ~~~~~~~~~~li~~~~~g~~~a~~~l~~~---y~~~l~~~~~~~~~~~~dA--eDivQe~fi~l~~~~~~~~~~~--~~~ 82 (194)
T PRK09646 10 PPAESPDLDALLRRVARGDQDAFAELYDR---TSSRVYGLVRRVLRDPGYS--EETTQEVYLEVWRTASRFDPAR--GSA 82 (194)
T ss_pred CCCCcccHHHHHHHHHccCHHHHHHHHHH---HHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHhhhhcCccc--ccH
Confidence 33444555555666655555555555432 2344555542222222221 1111244665555544441111 123
Q ss_pred cCC--CchHHHHHHHHHhhcCc-CC---------C--CCCChHHHHHHHHHHHHhhhhccccCCCCCccccCCchhhhhh
Q 023129 136 RGW--RPSYRNVLLAVRKNLNI-PC---------S--SKLSTEDLEAEIFLHLLQEYASEESGVFPGSWENSEASDAQNS 201 (287)
Q Consensus 136 RG~--gvsYReILldVC~kLKV-~y---------s--~~lsT~dIEaeifL~lL~~~ss~~~g~~~~aWeKm~~~e~q~s 201 (287)
++| ++.++.++-...++-.- .. . .....++++.+-....|.+ +.++|++.+ ++.
T Consensus 83 ~~wl~~ia~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~l~~L~~~~-r~v 150 (194)
T PRK09646 83 LAWLLTLAHRRAVDRVRSEQAASQREVRYGARNVDPAFDQVAEEVEARLERERVRD-----------CLDALTDTQ-RES 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccccccchHHHHHHHhHHHHHHH-----------HHHhCCHHH-HHH
Confidence 333 45555555444432210 00 0 0112233333344455556 566788877 555
Q ss_pred hhhh-hhhhHHHHHH-HhhhhhHHHHHHHHHHHHHHHH
Q 023129 202 LELG-LSQWKVQALA-AFNAGAVELKSMMLKLMRNLSG 237 (287)
Q Consensus 202 l~~~-L~~~~~~lla-~lk~G~a~~vssvlkL~k~la~ 237 (287)
+... +..++..=++ .+.....-+.+-+-+-.++|-.
T Consensus 151 l~l~~~~~~s~~EIA~~Lgis~~tVk~~l~ra~~~Lr~ 188 (194)
T PRK09646 151 VTLAYYGGLTYREVAERLAVPLGTVKTRMRDGLIRLRD 188 (194)
T ss_pred HHHHHHcCCCHHHHHHHhCCChHhHHHHHHHHHHHHHH
Confidence 4443 4445544455 5566555454444444444433
No 23
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.
Probab=21.29 E-value=89 Score=27.07 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=25.0
Q ss_pred HHHHHHhhcCcCC---CCCC--ChHHHHHHHHHHHHhh
Q 023129 145 VLLAVRKNLNIPC---SSKL--STEDLEAEIFLHLLQE 177 (287)
Q Consensus 145 ILldVC~kLKV~y---s~~l--sT~dIEaeifL~lL~~ 177 (287)
-|-++|++++|+. +.+. +-...-+++|++++++
T Consensus 151 ~L~~l~~~~gi~~~~~~~H~Al~DA~ata~lf~~l~~~ 188 (189)
T cd06134 151 VLAKACQAAGIEFDNKEAHSALYDTQKTAELFCKIVNR 188 (189)
T ss_pred cHHHHHHHCCCCCCCCCCcChHHHHHHHHHHHHHHHHh
Confidence 3889999999985 3344 4445568999999987
No 24
>PF15540 Toxin_62: Putative toxin 62
Probab=21.00 E-value=69 Score=27.51 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.3
Q ss_pred hcCCCchHHHHHHHHHhhcCcCC
Q 023129 135 LRGWRPSYRNVLLAVRKNLNIPC 157 (287)
Q Consensus 135 LRG~gvsYReILldVC~kLKV~y 157 (287)
+||.+.+||+.|-+..++-+||-
T Consensus 15 ~rgtg~~y~~aldeAfrRTg~pk 37 (113)
T PF15540_consen 15 PRGTGKSYRDALDEAFRRTGVPK 37 (113)
T ss_pred cccccchhhHHHHHHHHhhCCCc
Confidence 68999999999999999999984
No 25
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=20.19 E-value=49 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=19.6
Q ss_pred hhcCC--CchHHHHHHHHHhhcCcC
Q 023129 134 TLRGW--RPSYRNVLLAVRKNLNIP 156 (287)
Q Consensus 134 vLRG~--gvsYReILldVC~kLKV~ 156 (287)
.++|+ ||-||.-..+.+++++|.
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~ 33 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLT 33 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-E
T ss_pred EEEEEECcCChhHHHHHHHHHhCCc
Confidence 46786 999999999999999985
Done!