Query 023129
Match_columns 287
No_of_seqs 68 out of 70
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 16:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jx3_A Protein DEK; alpha heli 74.1 9.9 0.00034 31.3 7.1 93 60-176 14-108 (131)
2 2vzs_A CSXA, EXO-beta-D-glucos 22.7 25 0.00087 36.7 1.1 37 118-155 374-411 (1032)
3 1oey_A P67-PHOX, neutrophil cy 20.1 45 0.0015 25.6 1.8 20 137-156 21-40 (83)
4 4epz_A Transcription anti-term 18.2 2E+02 0.007 24.9 5.6 60 113-179 8-71 (162)
5 1rp3_A RNA polymerase sigma fa 16.3 1.5E+02 0.005 23.5 4.1 37 141-177 20-56 (239)
6 1kdx_B CREB; complex (transcri 16.2 70 0.0024 20.6 1.7 13 138-150 12-24 (28)
7 2do9_A NALP10, nacht-, LRR- an 14.6 1.9E+02 0.0064 23.0 4.2 25 61-85 18-42 (115)
8 1x1f_A Signal-transducing adap 13.5 88 0.003 25.3 2.0 51 103-153 91-141 (149)
9 4dnd_A Syntaxin-10, SYN10; str 13.4 1.1E+02 0.0036 25.0 2.5 54 60-125 69-122 (130)
10 2xi8_A Putative transcription 13.2 2E+02 0.0067 18.2 3.4 25 132-156 32-56 (66)
No 1
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=74.11 E-value=9.9 Score=31.26 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=56.5
Q ss_pred ChHHHHHHHhhChHHHHHHHHHhcCCCCCCc--chhhhcccCCcchhHHhhhhHHHHHHHHHHHHHHhccccchhhhhcC
Q 023129 60 DPELRSVLELATDSELYELERILFGPSYFSP--LLKSFTKRADVDYVMIEQDLEEREDFIASLESRFLFLAADARSTLRG 137 (287)
Q Consensus 60 ddELr~~LELATdEEL~eLt~ILf~~r~fsP--LLkSi~kr~~~Dy~~i~~~~~~R~~~i~~IEsRFqflAaD~~tvLRG 137 (287)
.|.....+...+-++|..|.+|||++. ... +-+++..=.+..+. .++++++.-.+.|+
T Consensus 14 Ip~V~~~i~k~k~d~Lk~LH~ilfgr~-Gk~~~~KknI~~FsGF~~~---~~~~~~~k~~e~l~---------------- 73 (131)
T 2jx3_A 14 IERIHFFLSKKKTDELRNLHKLLYNRP-GTVSSLKKNVGQFSGFPFE---KGSVQYKKKEEMLK---------------- 73 (131)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTSSSC-CCSHHHHHHHHTSSCSSCC---CSSHHHHHHHHHHH----------------
T ss_pred cHHHHHHHcccCHHHHHHHHHHHcCCC-ChHhHHHHHHHhcCCCCCC---ccHHHHHHHHHHHH----------------
Confidence 466777788888889999999999886 333 12222211122222 12333333333332
Q ss_pred CCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHh
Q 023129 138 WRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQ 176 (287)
Q Consensus 138 ~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~ 176 (287)
-...+-|.++|+-|+|+++. +.++|-..|+-.|+.
T Consensus 74 --K~~~~~L~~~c~iL~l~~~g--~keelv~ril~FL~~ 108 (131)
T 2jx3_A 74 --KFRNAMLKSICEVLDLERSG--VNSELVKRILNFLMH 108 (131)
T ss_dssp --HHHHHHHHHHHHTTTCCSCS--CHHHHHHHHHHTTTS
T ss_pred --ccCHHHHHHHHHHHCCCCCC--cHHHHHHHHHHHHhC
Confidence 12356788999999999983 567777777655543
No 2
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=22.75 E-value=25 Score=36.68 Aligned_cols=37 Identities=8% Similarity=0.178 Sum_probs=29.5
Q ss_pred HHHHHHHhccccchhhhhc-CCCchHHHHHHHHHhhcCc
Q 023129 118 ASLESRFLFLAADARSTLR-GWRPSYRNVLLAVRKNLNI 155 (287)
Q Consensus 118 ~~IEsRFqflAaD~~tvLR-G~gvsYReILldVC~kLKV 155 (287)
+.++..|+..-.-++|++| ++++ ..+.+.|.||++||
T Consensus 374 e~~~~dl~~~k~~g~N~iR~~h~~-~~~~fydlcDelGi 411 (1032)
T 2vzs_A 374 TAAADKLKYVLNLGLNTVRLEGHI-EPDEFFDIADDLGV 411 (1032)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESCC-CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCEEECCCCC-CcHHHHHHHHHCCC
Confidence 3455666777777799999 5677 89999999999997
No 3
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=20.08 E-value=45 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCchHHHHHHHHHhhcCcC
Q 023129 137 GWRPSYRNVLLAVRKNLNIP 156 (287)
Q Consensus 137 G~gvsYReILldVC~kLKV~ 156 (287)
..|++|+++.--||+||+++
T Consensus 21 p~~~~y~~L~~~l~~kL~l~ 40 (83)
T 1oey_A 21 QPGLPYSQVRDMVSKKLELR 40 (83)
T ss_dssp CTTCCHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCCC
Confidence 46999999999999999997
No 4
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=18.17 E-value=2e+02 Score=24.87 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhccccchh----hhhcCCCchHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhhhh
Q 023129 113 REDFIASLESRFLFLAADAR----STLRGWRPSYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQEYA 179 (287)
Q Consensus 113 R~~~i~~IEsRFqflAaD~~----tvLRG~gvsYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~~s 179 (287)
+-.=++.++-++.|+|.||- .-|+. .=|+ |-.+-.-=|+.+-+|.+=|+++-+.||--|+
T Consensus 8 ~i~~Lq~~aH~LlylG~dg~PIYsD~f~r---LN~e----V~~~~~~Ly~~~G~t~EeEA~LCLaLLmGYn 71 (162)
T 4epz_A 8 RALELQRMAHELMYLDTNGSPIYSDEFCR---LNKE----VLTRSDSLFSEQSSDIEEEGNLCLALLMGYN 71 (162)
T ss_dssp HHHHHHHHHHHHHTC------CCCHHHHH---HHHH----HHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCeeechHHHH---HhHH----HHHHHHHHHHccCCCHHHHHHHHHHHHHhcc
Confidence 33345567999999999983 22332 1123 3333333488899999999999999997766
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=16.25 E-value=1.5e+02 Score=23.51 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhhcCcCCCCCCChHHHHHHHHHHHHhh
Q 023129 141 SYRNVLLAVRKNLNIPCSSKLSTEDLEAEIFLHLLQE 177 (287)
Q Consensus 141 sYReILldVC~kLKV~ys~~lsT~dIEaeifL~lL~~ 177 (287)
.|...+..+|.++.-.+......+|+-++.|+.+++.
T Consensus 20 ~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~ 56 (239)
T 1rp3_A 20 KYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKA 56 (239)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 3666667777776544466778999999999999987
No 6
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=16.22 E-value=70 Score=20.58 Aligned_cols=13 Identities=46% Similarity=0.810 Sum_probs=10.7
Q ss_pred CCchHHHHHHHHH
Q 023129 138 WRPSYRNVLLAVR 150 (287)
Q Consensus 138 ~gvsYReILldVC 150 (287)
+++|||.||-|..
T Consensus 12 rrpSYrkIlndls 24 (28)
T 1kdx_B 12 RRPSYRKILNDLS 24 (28)
T ss_dssp TSTHHHHHHHHHH
T ss_pred cCchHHHHHHhhc
Confidence 4889999998764
No 7
>2do9_A NALP10, nacht-, LRR- and PYD-containing protein 10; apoptosis, inflammation, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=14.64 E-value=1.9e+02 Score=22.95 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=22.1
Q ss_pred hHHHHHHHhhChHHHHHHHHHhcCC
Q 023129 61 PELRSVLELATDSELYELERILFGP 85 (287)
Q Consensus 61 dELr~~LELATdEEL~eLt~ILf~~ 85 (287)
+-|...||.-+++||..|-..|-..
T Consensus 18 ~~Ll~~Le~L~~eElkkFK~~L~~~ 42 (115)
T 2do9_A 18 EALLWALNDLEENSFKTLKFHLRDV 42 (115)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHHHHccC
Confidence 6788999999999999999998643
No 8
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=13.47 E-value=88 Score=25.29 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=37.3
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHhccccchhhhhcCCCchHHHHHHHHHhhc
Q 023129 103 YVMIEQDLEEREDFIASLESRFLFLAADARSTLRGWRPSYRNVLLAVRKNL 153 (287)
Q Consensus 103 y~~i~~~~~~R~~~i~~IEsRFqflAaD~~tvLRG~gvsYReILldVC~kL 153 (287)
|.......++|+.|+..|-.=...-.....+.+-|.-..-+++|..+-++.
T Consensus 91 ~~f~A~s~ee~~eWi~aI~~v~~~~~p~~~~l~p~~~~~~~~~l~~~~~r~ 141 (149)
T 1x1f_A 91 VQLKTENTESGEEWRGFILTVTELSVPQNVSLLPGQVIKLHEVLEREKKRR 141 (149)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHHcccCCCccccCccchHHHHHHHHHHHHHH
Confidence 344567789999999999766555455556788887777788888776554
No 9
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=13.42 E-value=1.1e+02 Score=24.96 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=31.5
Q ss_pred ChHHHHHHHhhChHHHHHHHHHhcCCCCCCcchhhhcccCCcchhHHhhhhHHHHHHHHHHHHHHh
Q 023129 60 DPELRSVLELATDSELYELERILFGPSYFSPLLKSFTKRADVDYVMIEQDLEEREDFIASLESRFL 125 (287)
Q Consensus 60 ddELr~~LELATdEEL~eLt~ILf~~r~fsPLLkSi~kr~~~Dy~~i~~~~~~R~~~i~~IEsRFq 125 (287)
-.||+..|+-+ +++|.||.+-.-=-. -+| ..|.-.......|++|+..+.+++.
T Consensus 69 ~~EL~~~l~si-e~dLeDLe~sI~ivE-~np----------~kF~l~~~Ei~~Rr~fV~~~r~~I~ 122 (130)
T 4dnd_A 69 TNELRNGLRSI-EWDLEDLEETIGIVE-ANP----------GKFKLPAGDLQERKVFVERMREAVQ 122 (130)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHH-HCH----------HHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH-hCH----------HhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34567777765 456777766543101 122 2222122346789999999988875
No 10
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=13.19 E-value=2e+02 Score=18.19 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=17.8
Q ss_pred hhhhcCCCchHHHHHHHHHhhcCcC
Q 023129 132 RSTLRGWRPSYRNVLLAVRKNLNIP 156 (287)
Q Consensus 132 ~tvLRG~gvsYReILldVC~kLKV~ 156 (287)
-...+|+...-.+.+..+|+.++++
T Consensus 32 ~~~e~g~~~~~~~~l~~i~~~l~~~ 56 (66)
T 2xi8_A 32 NGIEKNKYNPSLQLALKIAYYLNTP 56 (66)
T ss_dssp HHHHTTSCCCCHHHHHHHHHHTTSC
T ss_pred HHHHcCCCCCCHHHHHHHHHHHCcC
Confidence 3566776444556788999999986
Done!