BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023130
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 105/196 (53%), Gaps = 5/196 (2%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQ-TLAGGKGANQAACGAKLSHPTYFVGQVG 128
+V++GS N D ++ ++R + GET+ + +Q GGKGANQA A++ T F+ ++G
Sbjct: 5 VVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIG 64
Query: 129 EDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPE 188
D I + + Y ++K TG A + + ++GQN+I + GG NM+ PE
Sbjct: 65 TDGVADFILEDFKVAHIDTSY--IIKTAEAKTGQAFITVNAEGQNTIYVYGGANMTMTPE 122
Query: 189 KFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFI 248
+ + + A V+ Q E+P I + A++ GV + + A +P ELL+ I
Sbjct: 123 DVINAK-DAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKA-LPNELLSLI 180
Query: 249 DILSPNESELGRLTGM 264
DI+ PNE+E L+G+
Sbjct: 181 DIIVPNETEAELLSGI 196
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 96/192 (50%), Gaps = 13/192 (6%)
Query: 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHP-TYFVGQVGED 130
VVGS+N DI +++D K GET A GGKGANQA AK+ FV +G D
Sbjct: 19 VVGSSNIDIVLKVDHFTKPGETQKAIEMNVFPGGKGANQAVTVAKIGEKGCRFVTCIGND 78
Query: 131 ANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKF 190
L+ + G+ Y+ V +PTG A + + GQN III G N E
Sbjct: 79 DYSDLLIENYEKLGIT-GYIRV----SLPTGRAFIEVDKTGQNRIIIFPGANAELKKELI 133
Query: 191 GDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDI 250
D + ++ I+LLQ EIP ++ AK R G+ VIFD I +E+ ++D
Sbjct: 134 ---DWNTLSESDILLLQNEIPFETTLECAK--RFNGI-VIFDPAPAQG-INEEIFQYLDY 186
Query: 251 LSPNESELGRLT 262
L+PNE E+ L+
Sbjct: 187 LTPNEKEIEALS 198
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 106/215 (49%), Gaps = 10/215 (4%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
LVV+GS N D + + P GETV Q GGKGANQA + F+ G+
Sbjct: 7 LVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGD 66
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK 189
D+ G+ + L+ + + ++V+K G TG A++ + +G+N I I G N + P
Sbjct: 67 DSIGESVRQQLATDNIDITPVSVIK--GESTGVALIFVNGEGENVIGIHAGANAALSP-A 123
Query: 190 FGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAP---IPQELLN 246
+ E + A +L+Q E P + AK A V + AP +P ELL
Sbjct: 124 LVEAQRERIANASALLMQLESPLESVMAAAKIAHQNKTIVALNP----APARELPDELLA 179
Query: 247 FIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281
+DI++PNE+E +LTG+ ++ E ++A H+
Sbjct: 180 LVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHE 214
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 11/208 (5%)
Query: 74 GSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANG 133
GS D+ RLPK GET+ GGKGANQ A+L T V +VG+D+ G
Sbjct: 31 GSCMTDLVSLTSRLPKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFG 90
Query: 134 KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDE 193
+ L + ++ KD TG A +++ ++GQN I+IV G N+ E
Sbjct: 91 NDYIENLKQNDISTEFTYQTKDAA--TGTASIIVNNEGQNIIVIVAGANL-----LLNTE 143
Query: 194 DLE----VVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249
DL V+ +A +++ Q EI + +++ AR +GV +F+ A + + D
Sbjct: 144 DLRAAANVISRAKVMVCQLEITPATSLEALTMARRSGVKTLFNPAPAIADLDPQFYTLSD 203
Query: 250 ILSPNESELGRLTGMPTDSYEQISEAVV 277
+ NESE LTG+ S EA +
Sbjct: 204 VFCCNESEAEILTGLTVGSAADAGEAAL 231
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 91/197 (46%), Gaps = 11/197 (5%)
Query: 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDA 131
VVGS N D+ +D LP+ GETV A + GGKGANQA A+ F G G+D
Sbjct: 24 VVGSVNMDLTFVVDALPRPGETVLAASLTRTPGGKGANQAVAAARAGAQVQFSGAFGDDP 83
Query: 132 NGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG 191
+ L V LD V P+G A++++ + +N++++ G N P
Sbjct: 84 AAAQLRAHLRANAVGLDRTVTVPG---PSGTAIIVVDASAENTVLVAPGANAHLTPVP-- 138
Query: 192 DEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA--GGMDAPIPQELLNFID 249
V ++L Q EIP + + A+AA+SA V+ +A G D Q+L D
Sbjct: 139 ----SAVANCDVLLTQLEIPVATALAAARAAQSADAVVMVNASPAGQDRSSLQDLAAIAD 194
Query: 250 ILSPNESELGRLTGMPT 266
++ NE E PT
Sbjct: 195 VVIANEHEANDWPSPPT 211
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 29/200 (14%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETV-AAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVG 128
+ V G+ D I +PK G ++ K SQ + GGKGANQA ++ T + G
Sbjct: 5 VYVTGNITVDETWSIPDIPKKGASIHGVKVSQDI-GGKGANQAIILSRCGIETRLIAATG 63
Query: 129 EDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH-------AVVMLQSDGQNSIIIVGGT 181
D+NG I + + L +P GH ++++ +DG N+II
Sbjct: 64 NDSNGAWIRQQIKNEPLXL----------LPDGHFNQHSDTSIILNSADGDNAIITTTAA 113
Query: 182 NMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKA----ARSAGVPVIFDAGGMD 237
+ ++ + V AG +LLQ+ + ++ +A ARS G +F+ ++
Sbjct: 114 ADTFSLDEXIPHXADAV--AGDILLQQ---GNFSLDKTRALFQYARSRGXTTVFNPSPVN 168
Query: 238 APIPQELLNFIDILSPNESE 257
P L IDI NESE
Sbjct: 169 -PDFCHLWPLIDIAVVNESE 187
>pdb|2JGV|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2JGV|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase In Complex With Adp
pdb|2Q5R|A Chain A, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|B Chain B, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|C Chain C, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
pdb|2Q5R|D Chain D, Structure Of Apo Staphylococcus Aureus
D-Tagatose-6-Phosphate Kinase
Length = 330
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 19/199 (9%)
Query: 83 EIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142
+++R+ +V +T AGGKG N A++ P G +G + G+ I L
Sbjct: 44 DVNRVQEVSKT---------AGGKGLNVTRVLAQVGEPVLASGFIGGEL-GQFIAKKLDH 93
Query: 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAG 202
++ + N+ + T + + +L Q I+ G + F ++++K
Sbjct: 94 ADIKHAFYNIKGE----TRNCIAILHEGQQTEILEQGPEIDNQEAAGFIKHFEQLLEKVE 149
Query: 203 IVLLQREIPDSVN----IQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESEL 258
V + +P +N Q+ + ++ GVPVI D G E ++ PN SEL
Sbjct: 150 AVAISGSLPKGLNQDYYAQIIERCQNKGVPVILDCSGATLQTVLENPYKPTVIKPNISEL 209
Query: 259 GRLTGMPTD-SYEQISEAV 276
+L P D S E + +AV
Sbjct: 210 YQLLNQPLDESLESLKQAV 228
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 32/228 (14%)
Query: 70 LVVVGSANFDI--------YVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPT 121
++ +G+A DI ++D P E +A T GG N+A ++L H T
Sbjct: 8 VICIGAAIVDIPLQPVSKNIFDVDSYPL--ERIAXTT-----GGDAINEATIISRLGHRT 60
Query: 122 YFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT 181
++G+DA G+ I D +D ++ +D + T V ++ DG+ + V
Sbjct: 61 ALXSRIGKDAAGQFILDHCR--KENIDIQSLKQDVSIDTSINVGLVTEDGERT--FVTNR 116
Query: 182 NMSCWPEKFGDEDLEVVKKAGIVLLQREIPDS--------VNIQVAKAARSAGVPVIFDA 233
N S W D D +A ++ L I +S I AR +
Sbjct: 117 NGSLWKLNIDDVDFARFSQAKLLSLA-SIFNSPLLDGKALTEIFTQAKARQXIICADXIK 175
Query: 234 GGMDAPIPQ--ELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKC 279
++ + E L+++D L PN +E LTG T ++I++ + C
Sbjct: 176 PRLNETLDDICEALSYVDYLFPNFAEAKLLTGKET--LDEIADCFLAC 221
>pdb|2JG1|A Chain A, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|B Chain B, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|C Chain C, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
pdb|2JG1|D Chain D, Structure Of Staphylococcus Aureus D-Tagatose-6-Phosphate
Kinase With Cofactor And Substrate
Length = 330
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 19/199 (9%)
Query: 83 EIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSG 142
+++R+ +V +T AGGKG N A++ P G +G + G+ I L
Sbjct: 44 DVNRVQEVSKT---------AGGKGLNVTRVLAQVGEPVLASGFIGGEL-GQFIAKKLDH 93
Query: 143 CGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAG 202
++ + N+ + T + + +L Q I+ G + F + +K
Sbjct: 94 ADIKHAFYNIKGE----TRNCIAILHEGQQTEILEQGPEIDNQEAAGFIKHFEQXXEKVE 149
Query: 203 IVLLQREIPDSVN----IQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESEL 258
V + +P +N Q+ + ++ GVPVI D G E ++ PN SEL
Sbjct: 150 AVAISGSLPKGLNQDYYAQIIERCQNKGVPVILDCSGATLQTVLENPYKPTVIKPNISEL 209
Query: 259 GRLTGMPTD-SYEQISEAV 276
+L P D S E + +AV
Sbjct: 210 YQLLNQPLDESLESLKQAV 228
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN C A+L F+G +G+D G+ + GV + ++ + D + +
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL--DADLTSAVL 107
Query: 164 VVMLQSDGQNSI--IIVGGTNMSCWPEKFGD-EDLEVVKKAGIVLLQREIPDSVNIQVAK 220
+V L +DG+ S ++ G + P+ E + I L R ++ ++ A+
Sbjct: 108 IVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREAC-LEGAR 166
Query: 221 AARSAGVPVIFD 232
R AG V+FD
Sbjct: 167 RXREAGGYVLFD 178
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN C A+L F+G +G+D G+ + GV + ++ + D + +
Sbjct: 50 GGASANVGVCVARLGGECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRL--DADLTSAVL 107
Query: 164 VVMLQSDGQNSI--IIVGGTNMSCWPEKFGD-EDLEVVKKAGIVLLQREIPDSVNIQVAK 220
+V L +DG+ S ++ G + P+ E + I L R ++ ++ A+
Sbjct: 108 IVNLTADGERSFTYLVHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREAC-LEGAR 166
Query: 221 AARSAGVPVIFD 232
R AG V+FD
Sbjct: 167 RMREAGGYVLFD 178
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH 162
+GG N AA A L + G+V +D G++ T + GV + DG PT
Sbjct: 59 SGGSAGNTAAGVASLGGRAAYFGKVADDQLGEIFTHDIRAQGVHFQTKPL--DGHPPTAR 116
Query: 163 AVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI--PDSVNIQVAK 220
+ + + DG+ S G + PE D +VV ++ + + + P + +
Sbjct: 117 SXIFVTEDGERSXNTYLGACVELGPEDVED---DVVAQSKVTYFEGYLWDPPRAKDAIRE 173
Query: 221 AARSA 225
AAR A
Sbjct: 174 AARIA 178
>pdb|3KZH|A Chain A, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
pdb|3KZH|B Chain B, Crystal Structure Of A Putative Sugar Kinase From
Clostridium Perfringens
Length = 328
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 4/170 (2%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG N A A++ T F +G D +GK I + G D V++ G PT
Sbjct: 42 GGVCRNIAENXARVGVNTNFXSILGNDEHGKSIVEHSKKIGYHXDDSXVIEGGSTPT--Y 99
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAAR 223
+ +L +G+ I ++ F D E+ + A +L + P+ + + K +
Sbjct: 100 LAILDENGEXVSAIADXKSIGAXNTDFIDSKREIFENAEYTVLDSDNPE-IXEYLLKNFK 158
Query: 224 SAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP-TDSYEQI 272
++ A + L+ + PN E L G P TD+ + I
Sbjct: 159 DKTNFILDPVSAEKASWVKHLIKDFHTIKPNRHEAEILAGFPITDTDDLI 208
>pdb|2HQQ|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
pdb|2HW1|A Chain A, Crystal Structure Of Human Ketohexokinase Complexed To
Different Sugar Molecules
Length = 298
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F+G +
Sbjct: 6 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAP 65
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSII 176
+ D L V L Y G VP V++ ++ G +I+
Sbjct: 66 GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA-TVIINEASGSRTIL 111
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 70 LVVVGSANFDI-YVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVG 128
L+ +G A D+ VE +R + ET T GG AN +KL F+G++
Sbjct: 14 LIAIGRACIDLNAVEYNRPXE--ETX---TFSKYVGGSPANIVIGSSKLGLKAGFIGKIA 68
Query: 129 EDANGKLITDALSGCGVRLDYMNVVKD-GGVPTGHAVVMLQSDGQNSII 176
+D +G+ I G GV D N+V D G TG A ++S + SI+
Sbjct: 69 DDQHGRFIESYXRGVGV--DTSNLVVDQEGHKTGLAFTEIKSPEECSIL 115
>pdb|3BF5|A Chain A, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
pdb|3BF5|B Chain B, Crystal Structure Of Putative Ribokinase (10640157) From
Thermoplasma Acidophilum At 1.91 A Resolution
Length = 306
Score = 33.9 bits (76), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
L G N D+ + +D +P+ G +V K + GG N A K P VG
Sbjct: 23 LAYFGHLNIDVLISVDSIPREG-SVNVKDLRPRFGGTAGNFAIVAQKFRIPFDLYSAVGX 81
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA---------VVMLQSDGQNSIIIVGG 180
+ +Y+ ++ G+ TGH + + +DG+ +
Sbjct: 82 KTH--------------REYLAXIESXGINTGHVEKFEDESGPICYIATDGKKQVSFXHQ 127
Query: 181 TNMSCWPEKFGDE 193
+ W + DE
Sbjct: 128 GAXAAWAPQLADE 140
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH 162
AGG AN A A+L FVG +G D G + D+ + GV D +V+ T
Sbjct: 35 AGGAPANVAVAVARLGGAVQFVGXLGSDXFGDFLFDSFAEAGVVTD--GIVRTSTAKTAL 92
Query: 163 AVVMLQSDGQNSIIIVG--GTNMSCWPEKFGD---EDLEVVKKAGIVLLQREIPDSVNIQ 217
A V L + G+ S ++ E F D D + +I + V +
Sbjct: 93 AFVALDAHGERSFSFYRPPAADLLFRVEHFQDASFSDALIFHACSNSXTDADIAE-VTFE 151
Query: 218 VAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPN-ESELGRL 261
+ A++AG V FD LNF L PN E+ RL
Sbjct: 152 GXRRAQAAGAIVSFD------------LNFRPXLWPNGENPASRL 184
>pdb|2HLZ|A Chain A, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|B Chain B, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|C Chain C, Crystal Structure Of Human Ketohexokinase (Casp Target)
pdb|2HLZ|D Chain D, Crystal Structure Of Human Ketohexokinase (Casp Target)
Length = 312
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F G
Sbjct: 20 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTILSLLGAPCAFXGSXAP 79
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSII 176
+ D L V L Y G VP V++ ++ G +I+
Sbjct: 80 GHVADFVLDDLRRYSVDLRYTVFQTTGSVPIA-TVIINEASGSRTIL 125
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 100 QTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMN 151
+ GG N A A+L FVG+VGED G ++ + L GV L +
Sbjct: 29 EVYVGGAEVNVAVALARLGVKVGFVGRVGEDELGAMVEERLRAEGVDLTHFR 80
>pdb|2HO5|A Chain A, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
pdb|2HO5|B Chain B, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY
FROM Streptococcus Pneumoniae
Length = 325
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 193 EDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS 252
+ LEV K+ L+ P+S++ AKAA SAG VI + + PQE + I
Sbjct: 53 DQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQ--PQEWFDLIQTAE 110
Query: 253 PN 254
N
Sbjct: 111 KN 112
>pdb|4IQ0|A Chain A, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|B Chain B, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|C Chain C, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
pdb|4IQ0|D Chain D, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family
From Streptococcus Pneumoniae With Reductive Methylated
Lysine
Length = 328
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 193 EDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS 252
+ LEV K+ L+ P+S++ AKAA SAG VI + + PQE + I
Sbjct: 56 DQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQ--PQEWFDLIQTAE 113
Query: 253 PN 254
N
Sbjct: 114 KN 115
>pdb|2DPG|A Chain A, Complex Of Inactive Mutant (H240->n) Of Glucose
6-Phosphate Dehydrogenase From Leuconostoc Mesenteroides
With Nadp+
Length = 485
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ N++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---NTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP 265
A AG F + +P + N I + +L R G+P
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVP 331
>pdb|2AFB|A Chain A, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
pdb|2AFB|B Chain B, Crystal Structure Of 2-Dehydro-3- Deoxygluconokinase (Ec
2.7.1.45) (Tm0067) From Thermotoga Maritima At 2.05 A
Resolution
Length = 351
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 79/211 (37%), Gaps = 32/211 (15%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN AA A+ YFV ++ + G L GV+ DY + GG G
Sbjct: 44 GGAEANVAAFLAQXGLDAYFVTKLPNNPLGDAAAGHLRKFGVKTDY---IARGGNRIGIY 100
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVL--------LQREIPDSVN 215
+ + + + S ++ + + K D D E + L +E+P +
Sbjct: 101 FLEIGASQRPSKVVYDRAHSAISEAKREDFDWEKILDGARWFHFSGITPPLGKELPLILE 160
Query: 216 IQVAKAARSAGVPVIFDAGGMDAPIPQE--------LLNFIDILSPNESELGRLTGMPT- 266
K A GV V D +E ++D+L NE ++ ++ G+
Sbjct: 161 -DALKVANEKGVTVSCDLNYRARLWTKEEAQKVXIPFXEYVDVLIANEEDIEKVLGISVE 219
Query: 267 -----------DSYEQISEAVVKCHKMVSVG 286
++Y +I+E V + + +VG
Sbjct: 220 GLDLKTGKLNREAYAKIAEEVTRKYNFKTVG 250
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 77/196 (39%), Gaps = 22/196 (11%)
Query: 77 NFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAK-LSHP--TYFVGQVGEDANG 133
N I E +P E + ++ +AGG N L P F G VG+D
Sbjct: 53 NNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYA 112
Query: 134 KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKF-GD 192
+++ + + GV + Y + PTG V++ + Q S+ PE D
Sbjct: 113 RILEERATSNGVNVQYQ---RSATSPTGTCAVLV-TGTQRSLCANLAAANDFTPEHLRSD 168
Query: 193 EDLEVVKKAGIVLLQ---REIPDSVNIQVAKAARSAGVPVIFDAGGMDAP-IPQ------ 242
+ ++ A + + + VAK A + G + + + AP +PQ
Sbjct: 169 GNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMN---LSAPFVPQFYKNNL 225
Query: 243 -ELLNFIDILSPNESE 257
E+ ++D+L NE+E
Sbjct: 226 EEIFPYVDVLFGNETE 241
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 42/185 (22%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN A ++L + ++G DA G + D L G ++ DG
Sbjct: 54 GGSPANIAVNLSRLGKKVALISRLGADAFGNYLLDVLKG-------EQIITDG------- 99
Query: 164 VVMLQSDGQNSIIIV---GGTNMSCW-PEKFGD----ED---LEVVKKAGI-----VLLQ 207
+Q D + IV T W P + D ED E++K++ + +L
Sbjct: 100 ---IQQDKERRTTIVYVSKSTRTPDWLPYREADXYLQEDDIIFELIKRSKVFHLSTFILS 156
Query: 208 REIPDSVNIQVAKAARSAGVPVIFD---------AGGMDAPIPQELLNFIDILSPNESEL 258
R+ I+ AR G V FD G A + +E+++ D + P+ +
Sbjct: 157 RKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEGDDGAGVVEEIISRADFVKPSLDDA 216
Query: 259 GRLTG 263
L G
Sbjct: 217 RHLFG 221
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN A ++L + + +VG D G+ + + LS V D +VKD TG
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENV--DTRGIVKDEKKHTGIV 90
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIV 204
V L+ + ++ +++ + D + ++V++A IV
Sbjct: 91 FVQLKGASPSFLLY---DDVAYFNXTLNDINWDIVEEAKIV 128
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHA 163
GG AN A ++L + + +VG D G+ + + LS V D +VKD TG
Sbjct: 33 GGAPANVAVGVSRLGVKSSLISKVGNDPFGEYLIEELSKENV--DTRGIVKDEKKHTGIV 90
Query: 164 VVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIV 204
V L+ + ++ +++ + D + ++V++A IV
Sbjct: 91 FVQLKGASPSFLLY---DDVAYFNXTLNDINWDIVEEAKIV 128
>pdb|1E77|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides With
Substrate
pdb|1H9A|A Chain A, Complex Of Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From L. Mesenteroides With Coenzyme Nadp
pdb|1H9B|A Chain A, Active Mutant (Q365->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
Length = 485
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP 265
A AG F + +P + N I + +L R G+P
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVP 331
>pdb|1DPG|A Chain A, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
pdb|1DPG|B Chain B, Glucose 6-Phosphate Dehydrogenase From Leuconostoc
Mesenteroides
Length = 485
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP 265
A AG F + +P + N I + +L R G+P
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVP 331
>pdb|1H93|A Chain A, Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1H94|A Chain A, Complex Of Active Mutant (S215->c) Of Glucose 6-Phosphate
Dehydrogenase From L.Mesenteroides With Coenzyme Nad
Length = 485
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP 265
A AG F + +P + N I + +L R G+P
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVP 331
>pdb|1E7M|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides
pdb|1E7Y|A Chain A, Active Site Mutant (D177->n) Of Glucose 6-Phosphate
Dehydrogenase From Leuconostoc Mesenteroides Complexed
With Substrate And Nadph
Length = 485
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 161 GHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAK 220
G + M+Q+ +++ IVG M PE F D+D+ K A L+ VN +
Sbjct: 231 GALLDMIQN---HTMQIVGWLAMEK-PESFTDKDIRAAKNAAFNALKIYDEAEVNKYFVR 286
Query: 221 AARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP 265
A AG F + +P + N I + +L R G+P
Sbjct: 287 AQYGAGDSADFKPYLEELDVPADSKNNTFIAGELQFDLPRWEGVP 331
>pdb|3RPH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+.
pdb|3RPZ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadph
pdb|3RQ2|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadh
pdb|3RQ5|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Coa
pdb|3RQ6|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
Adp-Ribose
pdb|3RQ8|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RQH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P6-Di(Adenosine-5') Hexaphosphate
pdb|3RQQ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RQX|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
Length = 279
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 188 EKFGDEDLEVVKKAGIVLLQREIPDSVNIQVA-KAARSAGVPVIFDAGGM--------DA 238
+K D LE +A + + +P + ++Q A +A PVI DAG + +
Sbjct: 88 KKAADAQLEETYRA--IAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREG 145
Query: 239 PIPQELLNFIDILSPNESELGRLTGMPTDSYEQ 271
P+ IL+P+ E R+TG+P + ++
Sbjct: 146 PV---------ILTPHPGEFFRMTGVPVNELQK 169
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 199 KKAGIVL-LQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236
KK +V+ LQ + NI AK AGV VIF A G+
Sbjct: 393 KKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGL 431
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 30/209 (14%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG+A D + PK V +A G ++ A + G VG+
Sbjct: 32 VLCVGAAVLDTLFRVADXPKGEGKVLPYEVLQIAEGXASSAAYAVHRXGGRASLWGAVGD 91
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNM-----S 184
D G I LS G+ V G + + +++ + G+ I+ + +
Sbjct: 92 DETGTRILRDLSESGIDTSGXTVAP--GARSALSTIIIDNRGERLIVPFYDHRLHEKKRA 149
Query: 185 CWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQEL 244
C PE D VL+ P+ + + V AR+ G P I D G AP+
Sbjct: 150 CTPEDIALFD--------AVLVDVRWPE-LALDVLTVARALGKPAILD--GDVAPV---- 194
Query: 245 LNFIDILSP-------NESELGRLTGMPT 266
++ L+P +E RLTG+ T
Sbjct: 195 -ETLEGLAPAATHIVFSEPAATRLTGLET 222
>pdb|3B3L|A Chain A, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|B Chain B, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|C Chain C, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
pdb|3B3L|D Chain D, Crystal Structures Of Alternatively-Spliced Isoforms Of
Human Ketohexokinase
Length = 298
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F+G +
Sbjct: 6 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAP 65
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII 177
+ GV + + G P+ ++ S+G +I++
Sbjct: 66 GHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIIN-NSNGNRTIVL 112
>pdb|3NBV|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBV|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With Amp-Pnp
And Fructose
pdb|3NBW|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NBW|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrazole Compound
pdb|3NC2|A Chain A, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC2|B Chain B, X-Ray Structure Of Ketohexokinase With A Quinazoline
pdb|3NC9|A Chain A, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NC9|B Chain B, X-Ray Structure Of Ketohexokinase Complexed With An
Indazole Compound
pdb|3NCA|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3NCA|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A Thieno
Pyridinol Compound
pdb|3RO4|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3RO4|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With An
Indazole Compound Derivative
pdb|3Q92|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3Q92|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 1
pdb|3QA2|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QA2|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 2
pdb|3QAI|A Chain A, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
pdb|3QAI|B Chain B, X-Ray Structure Of Ketohexokinase In Complex With A
Pyrimidopyrimidine Analog 3
Length = 313
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 1/108 (0%)
Query: 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129
++ VG D+ +D+ PK + + + GG +N + L P F+G +
Sbjct: 21 ILCVGLVVLDVISLVDKYPKEDSEIRCLSQRWQRGGNASNSCTVLSLLGAPCAFMGSMAP 80
Query: 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII 177
+ GV + + G P+ ++ S+G +I++
Sbjct: 81 GHVADFLVADFRRRGVDVSQVAWQSKGDTPSSCCIIN-NSNGNRTIVL 127
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase
pdb|2HJH|B Chain B, Crystal Structure Of The Sir2 Deacetylase
Length = 354
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 207 QRE-IPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMP 265
+RE P+ N +V AA + G + P +LN +L P+ + G +P
Sbjct: 195 RREYFPEGYNNKVGVAA----------SQGSXSERPPYILNSYGVLKPDITFFGE--ALP 242
Query: 266 TDSYEQISEAVVKCHKMVSVGT 287
++ I E +++C ++ +GT
Sbjct: 243 NKFHKSIREDILECDLLICIGT 264
>pdb|1KYH|A Chain A, Structure Of Bacillus Subtilis Yxko, A Member Of The
Upf0031 Family And A Putative Kinase
Length = 276
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 20/93 (21%)
Query: 188 EKFGDEDLEVVKKAGIVLLQREIPDSVNIQVA-KAARSAGVPVIFDAGGM--------DA 238
+K D LE +A + + +P + ++Q A +A PVI DAG + +
Sbjct: 85 KKAADAQLEETYRA--IAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKREG 142
Query: 239 PIPQELLNFIDILSPNESELGRLTGMPTDSYEQ 271
P+ IL+P+ E R TG+P + ++
Sbjct: 143 PV---------ILTPHPGEFFRXTGVPVNELQK 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,996,575
Number of Sequences: 62578
Number of extensions: 326781
Number of successful extensions: 806
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 761
Number of HSP's gapped (non-prelim): 51
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)