Query 023130
Match_columns 287
No_of_seqs 274 out of 1570
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11142 ribokinase; Provision 100.0 2E-32 4.4E-37 243.9 23.7 211 67-281 2-212 (306)
2 PTZ00292 ribokinase; Provision 100.0 6.2E-32 1.3E-36 243.0 24.2 219 60-281 8-232 (326)
3 cd01174 ribokinase Ribokinase 100.0 2.4E-31 5.1E-36 235.4 24.4 209 69-281 1-209 (292)
4 PRK15074 inosine/guanosine kin 100.0 9E-32 2E-36 247.8 20.6 237 36-280 2-278 (434)
5 cd01168 adenosine_kinase Adeno 100.0 2.3E-30 5E-35 231.4 17.7 192 67-264 1-217 (312)
6 PTZ00247 adenosine kinase; Pro 100.0 3E-30 6.6E-35 233.8 17.6 210 64-277 2-247 (345)
7 PLN02813 pfkB-type carbohydrat 100.0 1.2E-29 2.7E-34 234.7 19.6 208 63-276 65-312 (426)
8 TIGR02152 D_ribokin_bact ribok 100.0 2E-28 4.4E-33 216.9 22.6 205 74-281 1-205 (293)
9 PRK09850 pseudouridine kinase; 100.0 1.1E-28 2.3E-33 220.8 19.7 211 64-280 1-213 (313)
10 cd01944 YegV_kinase_like YegV- 100.0 1.7E-28 3.6E-33 217.0 20.1 189 69-265 1-199 (289)
11 PLN02341 pfkB-type carbohydrat 100.0 1.7E-28 3.8E-33 230.0 19.7 212 62-276 67-312 (470)
12 PLN02323 probable fructokinase 100.0 3E-28 6.6E-33 219.4 20.5 203 62-273 5-223 (330)
13 cd01945 ribokinase_group_B Rib 100.0 8.2E-28 1.8E-32 212.0 22.6 208 69-286 1-208 (284)
14 PLN02967 kinase 100.0 3.2E-28 6.9E-33 229.3 20.1 193 68-265 197-414 (581)
15 cd01942 ribokinase_group_A Rib 100.0 1.3E-27 2.9E-32 210.0 20.7 187 69-264 1-194 (279)
16 COG0524 RbsK Sugar kinases, ri 100.0 1.4E-27 2.9E-32 213.4 20.1 191 69-264 1-200 (311)
17 PLN02543 pfkB-type carbohydrat 100.0 1E-27 2.2E-32 223.8 19.2 191 68-265 126-345 (496)
18 cd01166 KdgK 2-keto-3-deoxyglu 100.0 1.4E-27 3E-32 211.3 17.7 199 69-279 1-215 (294)
19 PRK09954 putative kinase; Prov 100.0 4.9E-27 1.1E-31 214.2 21.3 205 68-280 58-266 (362)
20 cd01939 Ketohexokinase Ketohex 100.0 3.8E-27 8.3E-32 208.5 20.0 195 69-273 1-202 (290)
21 PF00294 PfkB: pfkB family car 100.0 4.5E-28 9.7E-33 215.0 11.0 208 67-281 1-216 (301)
22 cd01941 YeiC_kinase_like YeiC- 99.9 8.8E-27 1.9E-31 205.7 18.7 205 69-279 1-208 (288)
23 PLN02379 pfkB-type carbohydrat 99.9 1.2E-26 2.6E-31 211.4 19.5 210 64-279 16-265 (367)
24 cd01167 bac_FRK Fructokinases 99.9 1.9E-26 4.1E-31 204.2 19.7 205 69-287 1-219 (295)
25 KOG2855 Ribokinase [Carbohydra 99.9 5.7E-27 1.2E-31 203.9 15.4 198 64-264 6-217 (330)
26 TIGR03828 pfkB 1-phosphofructo 99.9 6.7E-26 1.5E-30 201.7 19.2 200 72-281 4-210 (304)
27 cd01947 Guanosine_kinase_like 99.9 1.5E-25 3.3E-30 195.7 19.8 180 69-263 1-181 (265)
28 cd01164 FruK_PfkB_like 1-phosp 99.9 1.2E-25 2.6E-30 198.8 18.4 200 71-281 4-211 (289)
29 PRK09434 aminoimidazole ribosi 99.9 2.6E-25 5.7E-30 198.0 20.1 191 67-277 2-208 (304)
30 cd01172 RfaE_like RfaE encodes 99.9 1.2E-24 2.7E-29 193.5 23.4 203 69-280 1-214 (304)
31 TIGR02198 rfaE_dom_I rfaE bifu 99.9 5.9E-25 1.3E-29 196.7 21.4 207 65-281 5-223 (315)
32 PRK13508 tagatose-6-phosphate 99.9 1.5E-24 3.3E-29 193.7 18.1 201 70-280 3-211 (309)
33 PRK09513 fruK 1-phosphofructok 99.9 2.1E-24 4.5E-29 193.0 18.9 202 70-281 5-214 (312)
34 TIGR01231 lacC tagatose-6-phos 99.9 1.7E-24 3.8E-29 193.3 17.9 202 71-279 3-210 (309)
35 PRK10294 6-phosphofructokinase 99.9 2.3E-24 4.9E-29 192.5 18.4 201 71-281 6-214 (309)
36 TIGR03168 1-PFK hexose kinase, 99.9 2.2E-24 4.8E-29 192.0 18.0 200 72-281 4-210 (303)
37 cd01943 MAK32 MAK32 kinase. M 99.9 2.4E-25 5.3E-30 200.2 11.2 181 69-266 1-199 (328)
38 PRK11316 bifunctional heptose 99.9 9E-24 1.9E-28 199.2 21.0 207 66-281 9-221 (473)
39 cd01940 Fructoselysine_kinase_ 99.9 7.7E-24 1.7E-28 184.8 18.2 169 69-258 1-171 (264)
40 PLN02548 adenosine kinase 99.9 1.5E-24 3.2E-29 195.6 14.1 189 73-265 1-221 (332)
41 COG1105 FruK Fructose-1-phosph 99.9 7.3E-24 1.6E-28 184.5 15.9 201 72-282 5-213 (310)
42 KOG2854 Possible pfkB family c 99.9 6E-23 1.3E-27 176.9 10.8 194 68-265 7-232 (343)
43 PRK09813 fructoselysine 6-kina 99.9 7.2E-22 1.6E-26 172.1 15.7 166 68-257 1-168 (260)
44 cd01937 ribokinase_group_D Rib 99.9 8.8E-21 1.9E-25 164.6 17.8 183 69-286 1-189 (254)
45 cd01946 ribokinase_group_C Rib 99.9 9.8E-21 2.1E-25 166.5 14.2 195 69-287 1-201 (277)
46 PLN02630 pfkB-type carbohydrat 99.8 1E-19 2.2E-24 163.6 18.6 170 65-261 9-195 (335)
47 COG2870 RfaE ADP-heptose synth 99.8 1E-18 2.2E-23 154.1 20.0 211 63-284 6-224 (467)
48 cd00287 ribokinase_pfkB_like r 99.8 8.8E-19 1.9E-23 145.8 16.8 138 69-281 1-143 (196)
49 KOG2947 Carbohydrate kinase [C 99.8 9E-18 1.9E-22 138.7 16.8 200 66-276 3-211 (308)
50 KOG3009 Predicted carbohydrate 99.0 3.7E-09 7.9E-14 95.3 10.4 143 68-259 341-486 (614)
51 PRK12412 pyridoxal kinase; Rev 98.3 7.8E-06 1.7E-10 71.6 12.2 145 123-282 4-167 (268)
52 PRK12413 phosphomethylpyrimidi 98.3 1E-05 2.3E-10 70.1 11.6 146 121-282 4-164 (253)
53 cd01169 HMPP_kinase 4-amino-5- 98.1 1.6E-05 3.4E-10 68.4 7.9 81 200-281 68-162 (242)
54 TIGR00097 HMP-P_kinase phospho 98.0 4.5E-05 9.8E-10 66.2 9.0 82 201-282 68-162 (254)
55 TIGR00196 yjeF_cterm yjeF C-te 97.9 4.7E-05 1E-09 66.8 9.0 85 196-282 88-176 (272)
56 cd01170 THZ_kinase 4-methyl-5- 97.9 6.5E-05 1.4E-09 64.8 9.1 93 190-282 39-151 (242)
57 cd01173 pyridoxal_pyridoxamine 97.9 6.8E-05 1.5E-09 65.0 8.9 83 199-282 71-171 (254)
58 cd01171 YXKO-related B.subtili 97.9 4.2E-05 9E-10 66.4 7.5 87 196-282 73-164 (254)
59 PRK06427 bifunctional hydroxy- 97.8 8E-05 1.7E-09 65.0 8.5 82 200-281 73-168 (266)
60 PRK07105 pyridoxamine kinase; 97.8 6.8E-05 1.5E-09 66.2 7.9 82 200-281 75-175 (284)
61 PRK08573 phosphomethylpyrimidi 97.8 7.8E-05 1.7E-09 70.1 8.6 79 202-281 73-164 (448)
62 TIGR00687 pyridox_kin pyridoxa 97.8 7.4E-05 1.6E-09 66.0 7.4 84 198-282 72-173 (286)
63 PRK05756 pyridoxamine kinase; 97.8 0.00013 2.8E-09 64.5 8.7 83 198-281 72-172 (286)
64 PRK08176 pdxK pyridoxal-pyrido 97.7 0.00014 3E-09 64.2 8.1 84 199-282 87-187 (281)
65 PRK12616 pyridoxal kinase; Rev 97.5 0.00036 7.8E-09 61.2 7.8 81 201-281 75-169 (270)
66 PF08543 Phos_pyr_kin: Phospho 97.5 0.00026 5.6E-09 61.2 6.4 83 200-282 60-154 (246)
67 PTZ00344 pyridoxal kinase; Pro 97.5 0.00039 8.4E-09 61.8 7.5 80 203-282 79-174 (296)
68 PRK14039 ADP-dependent glucoki 97.3 0.0043 9.2E-08 57.7 12.2 178 99-285 86-324 (453)
69 COG0351 ThiD Hydroxymethylpyri 97.3 0.00093 2E-08 57.6 7.4 80 202-281 74-167 (263)
70 COG2240 PdxK Pyridoxal/pyridox 97.3 0.0015 3.2E-08 56.8 8.5 84 197-281 70-170 (281)
71 PLN02978 pyridoxal kinase 97.3 0.0012 2.5E-08 59.1 8.0 81 201-282 87-184 (308)
72 PTZ00347 phosphomethylpyrimidi 97.0 0.0019 4.1E-08 61.8 7.3 92 188-281 285-395 (504)
73 TIGR02045 P_fruct_ADP ADP-spec 97.0 0.023 5.1E-07 52.8 13.5 179 101-285 86-325 (446)
74 TIGR00694 thiM hydroxyethylthi 96.9 0.0052 1.1E-07 53.2 8.9 91 192-282 41-150 (249)
75 PRK09355 hydroxyethylthiazole 96.9 0.008 1.7E-07 52.5 9.4 90 193-282 47-155 (263)
76 PLN02898 HMP-P kinase/thiamin- 96.8 0.008 1.7E-07 57.5 9.6 81 201-281 79-173 (502)
77 PRK03979 ADP-specific phosphof 96.6 0.02 4.3E-07 53.5 10.6 178 100-285 98-339 (463)
78 PF02110 HK: Hydroxyethylthiaz 96.4 0.012 2.6E-07 50.6 7.3 91 192-282 41-150 (246)
79 PRK09517 multifunctional thiam 96.4 0.012 2.7E-07 58.9 8.3 82 201-282 311-405 (755)
80 PRK14038 ADP-dependent glucoki 96.4 0.05 1.1E-06 50.7 11.5 182 100-285 106-335 (453)
81 PRK14713 multifunctional hydro 96.2 0.027 5.9E-07 54.2 9.3 80 201-281 99-192 (530)
82 KOG2599 Pyridoxal/pyridoxine/p 96.2 0.014 2.9E-07 50.2 6.1 82 200-282 81-179 (308)
83 cd01938 ADPGK_ADPPFK ADP-depen 95.8 0.12 2.7E-06 48.3 11.1 173 99-282 101-318 (445)
84 PTZ00493 phosphomethylpyrimidi 95.2 0.18 3.8E-06 45.3 9.7 81 201-282 74-178 (321)
85 COG2145 ThiM Hydroxyethylthiaz 94.6 0.12 2.6E-06 44.4 6.7 90 193-282 48-156 (265)
86 PF04587 ADP_PFK_GK: ADP-speci 93.2 0.074 1.6E-06 50.0 3.2 153 101-263 92-292 (444)
87 PRK10565 putative carbohydrate 91.7 0.87 1.9E-05 43.7 8.3 85 196-282 316-404 (508)
88 KOG3974 Predicted sugar kinase 90.9 1.3 2.7E-05 38.3 7.5 84 196-279 97-192 (306)
89 PRK10076 pyruvate formate lyas 90.8 1.4 3.1E-05 37.1 7.9 77 202-281 40-125 (213)
90 TIGR02826 RNR_activ_nrdG3 anae 83.3 2.6 5.7E-05 33.3 4.9 57 203-259 64-121 (147)
91 PF01256 Carb_kinase: Carbohyd 82.8 1.1 2.5E-05 38.5 2.9 72 194-266 61-135 (242)
92 COG1180 PflA Pyruvate-formate 82.2 4.7 0.0001 35.1 6.6 79 200-281 83-170 (260)
93 KOG2598 Phosphomethylpyrimidin 78.8 4 8.7E-05 37.8 5.0 81 201-282 93-193 (523)
94 COG0269 SgbH 3-hexulose-6-phos 76.5 7.2 0.00016 32.8 5.5 82 198-281 78-162 (217)
95 COG0063 Predicted sugar kinase 76.3 12 0.00026 33.0 7.2 69 198-266 99-171 (284)
96 PF01118 Semialdhyde_dh: Semia 76.2 6.6 0.00014 29.6 5.0 39 196-237 62-100 (121)
97 KOG4184 Predicted sugar kinase 75.4 2.5 5.5E-05 38.0 2.7 160 98-263 137-317 (478)
98 TIGR00334 5S_RNA_mat_M5 ribonu 74.4 11 0.00024 30.6 6.0 82 200-281 22-110 (174)
99 TIGR02495 NrdG2 anaerobic ribo 73.3 17 0.00037 29.6 7.2 79 202-281 64-151 (191)
100 COG4809 Archaeal ADP-dependent 70.6 60 0.0013 30.0 10.2 90 196-285 221-341 (466)
101 PF10087 DUF2325: Uncharacteri 66.9 17 0.00037 26.2 5.2 78 126-234 4-83 (97)
102 TIGR02494 PFLE_PFLC glycyl-rad 65.8 18 0.00039 31.8 6.1 77 202-281 127-212 (295)
103 PRK06702 O-acetylhomoserine am 65.5 49 0.0011 31.1 9.1 100 100-236 80-187 (432)
104 PRK05967 cystathionine beta-ly 65.4 72 0.0016 29.6 10.2 37 200-236 149-189 (395)
105 PRK11145 pflA pyruvate formate 63.0 16 0.00034 31.3 5.1 62 203-264 73-145 (246)
106 PRK06598 aspartate-semialdehyd 61.1 61 0.0013 29.8 8.7 96 120-236 3-100 (369)
107 PRK06901 aspartate-semialdehyd 60.5 91 0.002 28.1 9.4 88 125-236 9-97 (322)
108 PRK09028 cystathionine beta-ly 60.3 91 0.002 28.9 9.9 36 200-235 146-185 (394)
109 PRK13762 tRNA-modifying enzyme 60.1 79 0.0017 28.4 9.2 68 214-281 146-219 (322)
110 PRK07050 cystathionine beta-ly 59.8 1.1E+02 0.0025 28.1 10.5 37 200-236 150-190 (394)
111 PRK06728 aspartate-semialdehyd 59.8 92 0.002 28.4 9.6 95 119-236 6-101 (347)
112 PRK05613 O-acetylhomoserine am 59.0 51 0.0011 31.0 8.1 21 215-235 174-194 (437)
113 COG1058 CinA Predicted nucleot 58.3 19 0.00041 31.3 4.6 23 108-130 24-46 (255)
114 PRK04148 hypothetical protein; 58.2 22 0.00047 27.7 4.5 41 194-235 71-111 (134)
115 COG0136 Asd Aspartate-semialde 57.7 1E+02 0.0022 27.9 9.3 98 119-236 2-99 (334)
116 TIGR02742 TrbC_Ftype type-F co 57.0 23 0.0005 27.3 4.5 22 213-234 40-62 (130)
117 PF09673 TrbC_Ftype: Type-F co 56.7 20 0.00042 26.9 4.0 22 213-234 39-62 (113)
118 COG1618 Predicted nucleotide k 55.1 93 0.002 25.2 7.7 123 128-251 17-156 (179)
119 PRK14874 aspartate-semialdehyd 54.5 1.4E+02 0.0031 26.8 10.0 92 119-236 2-96 (334)
120 PLN02383 aspartate semialdehyd 53.5 81 0.0018 28.7 8.2 97 117-236 6-102 (344)
121 PRK08114 cystathionine beta-ly 52.8 96 0.0021 28.8 8.7 99 99-236 80-189 (395)
122 cd04726 KGPDC_HPS 3-Keto-L-gul 50.3 30 0.00066 28.3 4.6 56 199-254 76-133 (202)
123 TIGR02493 PFLA pyruvate format 50.2 1.1E+02 0.0024 25.6 8.2 76 203-281 68-154 (235)
124 COG2873 MET17 O-acetylhomoseri 50.1 38 0.00082 31.1 5.3 40 215-254 166-205 (426)
125 PF00070 Pyr_redox: Pyridine n 49.7 32 0.00069 23.5 4.0 43 106-148 10-58 (80)
126 TIGR03128 RuMP_HxlA 3-hexulose 49.0 42 0.00091 27.7 5.3 56 199-254 75-133 (206)
127 TIGR03278 methan_mark_10 putat 49.0 92 0.002 29.0 7.9 79 201-281 74-165 (404)
128 PRK07582 cystathionine gamma-l 48.0 1.4E+02 0.003 27.2 8.9 54 98-151 67-121 (366)
129 KOG0053 Cystathionine beta-lya 47.0 43 0.00092 31.1 5.3 36 201-236 163-202 (409)
130 PRK05671 aspartate-semialdehyd 46.9 1.6E+02 0.0034 26.7 9.0 95 120-237 6-100 (336)
131 PRK13601 putative L7Ae-like ri 44.1 74 0.0016 22.4 5.1 36 199-234 23-58 (82)
132 TIGR01745 asd_gamma aspartate- 44.1 1.2E+02 0.0026 27.9 7.7 96 120-236 2-99 (366)
133 PRK13018 cell division protein 43.7 67 0.0014 29.7 6.1 131 101-253 34-180 (378)
134 COG0169 AroE Shikimate 5-dehyd 43.5 2.3E+02 0.005 25.0 9.7 44 100-145 131-175 (283)
135 COG0075 Serine-pyruvate aminot 42.9 2E+02 0.0044 26.6 9.0 135 101-265 61-218 (383)
136 COG0373 HemA Glutamyl-tRNA red 42.8 66 0.0014 30.1 5.9 142 115-280 171-319 (414)
137 PRK13730 conjugal transfer pil 42.5 50 0.0011 27.6 4.5 32 202-233 92-123 (212)
138 PRK00278 trpC indole-3-glycero 41.6 42 0.00092 29.1 4.3 58 197-255 130-188 (260)
139 TIGR01296 asd_B aspartate-semi 41.0 2.2E+02 0.0048 25.7 9.0 92 121-236 2-94 (339)
140 cd07266 HPCD_N_class_II N-term 40.4 86 0.0019 22.7 5.4 50 127-178 68-117 (121)
141 PF14272 Gly_rich_SFCGS: Glyci 40.3 19 0.00041 26.1 1.6 39 105-147 10-49 (115)
142 PRK14106 murD UDP-N-acetylmura 39.1 1.2E+02 0.0026 28.3 7.3 43 103-146 13-55 (450)
143 cd01483 E1_enzyme_family Super 38.2 1.8E+02 0.0039 22.2 8.5 37 196-233 85-121 (143)
144 cd07261 Glo_EDI_BRP_like_11 Th 38.1 66 0.0014 23.1 4.4 39 133-175 73-111 (114)
145 PRK00676 hemA glutamyl-tRNA re 37.7 1.6E+02 0.0034 26.8 7.4 123 126-280 179-305 (338)
146 PRK00258 aroE shikimate 5-dehy 37.5 2E+02 0.0043 25.1 8.0 38 102-141 130-168 (278)
147 TIGR01768 GGGP-family geranylg 37.3 1.4E+02 0.003 25.4 6.5 37 200-236 27-65 (223)
148 COG1810 Uncharacterized protei 37.2 1.7E+02 0.0036 24.8 6.8 100 124-249 4-103 (224)
149 PRK13602 putative ribosomal pr 36.9 94 0.002 21.7 4.7 34 200-233 27-60 (82)
150 PRK08040 putative semialdehyde 36.7 2.6E+02 0.0057 25.3 8.7 95 119-236 5-99 (336)
151 cd00562 NifX_NifB This CD repr 36.7 61 0.0013 23.0 3.9 39 104-147 47-85 (102)
152 PRK13600 putative ribosomal pr 36.3 1.2E+02 0.0026 21.4 5.2 40 195-234 22-63 (84)
153 PRK08818 prephenate dehydrogen 36.3 2.4E+02 0.0053 25.9 8.5 40 196-237 47-91 (370)
154 PRK08133 O-succinylhomoserine 36.0 2.8E+02 0.0061 25.4 9.1 21 215-235 165-185 (390)
155 PF10678 DUF2492: Protein of u 34.8 99 0.0021 21.6 4.4 34 111-144 27-60 (78)
156 PRK13307 bifunctional formalde 34.3 77 0.0017 29.4 4.9 54 200-253 250-305 (391)
157 cd07265 2_3_CTD_N N-terminal d 34.3 1.1E+02 0.0023 22.3 5.1 43 133-177 75-117 (122)
158 TIGR03577 EF_0830 conserved hy 34.1 28 0.0006 25.3 1.6 40 105-144 10-50 (115)
159 COG0036 Rpe Pentose-5-phosphat 34.0 47 0.001 28.1 3.2 51 200-252 84-136 (220)
160 COG0626 MetC Cystathionine bet 33.8 88 0.0019 29.1 5.2 99 99-236 81-189 (396)
161 PRK05968 hypothetical protein; 33.5 1.4E+02 0.0029 27.5 6.5 38 198-235 145-186 (389)
162 PRK06683 hypothetical protein; 33.5 1.2E+02 0.0026 21.2 4.8 35 199-233 26-60 (82)
163 COG1255 Uncharacterized protei 33.4 2.2E+02 0.0047 21.7 10.2 85 126-234 19-103 (129)
164 COG0240 GpsA Glycerol-3-phosph 33.4 98 0.0021 28.0 5.3 96 124-231 4-103 (329)
165 cd07242 Glo_EDI_BRP_like_6 Thi 33.3 1.1E+02 0.0023 22.5 5.0 44 133-178 82-127 (128)
166 PRK13384 delta-aminolevulinic 33.3 1.3E+02 0.0028 27.0 5.8 151 68-235 113-276 (322)
167 cd02752 MopB_Formate-Dh-Na-lik 32.8 1.3E+02 0.0027 30.1 6.4 82 197-281 166-266 (649)
168 PRK01018 50S ribosomal protein 32.7 1.2E+02 0.0026 22.1 4.8 33 200-232 32-64 (99)
169 COG2518 Pcm Protein-L-isoaspar 32.5 3E+02 0.0066 23.1 8.2 45 100-147 77-121 (209)
170 PTZ00293 thymidine kinase; Pro 32.4 3E+02 0.0066 23.1 8.4 55 196-251 73-133 (211)
171 COG1179 Dinucleotide-utilizing 32.3 64 0.0014 27.9 3.7 35 199-234 120-154 (263)
172 cd01485 E1-1_like Ubiquitin ac 32.2 2.9E+02 0.0062 22.7 10.1 37 196-233 109-145 (198)
173 PRK04169 geranylgeranylglycery 32.1 2.8E+02 0.006 23.7 7.7 38 199-236 31-70 (232)
174 TIGR03853 matur_matur probable 31.4 1.2E+02 0.0026 21.1 4.3 35 110-144 24-58 (77)
175 TIGR01459 HAD-SF-IIA-hyp4 HAD- 31.1 2.9E+02 0.0063 23.3 7.8 42 102-147 26-67 (242)
176 COG2179 Predicted hydrolase of 31.0 2.1E+02 0.0045 23.3 6.2 50 102-154 68-117 (175)
177 PLN00203 glutamyl-tRNA reducta 30.9 1.6E+02 0.0034 28.5 6.6 138 109-264 249-398 (519)
178 TIGR00507 aroE shikimate 5-deh 30.6 3.5E+02 0.0076 23.3 8.4 41 101-144 123-164 (270)
179 PRK13957 indole-3-glycerol-pho 30.5 67 0.0015 27.7 3.7 88 198-287 122-231 (247)
180 PF01053 Cys_Met_Meta_PP: Cys/ 30.2 1E+02 0.0022 28.5 5.1 100 99-236 73-181 (386)
181 TIGR02177 PorB_KorB 2-oxoacid: 30.2 3.9E+02 0.0084 23.6 10.6 123 105-234 56-184 (287)
182 cd00757 ThiF_MoeB_HesA_family 30.1 3.3E+02 0.0072 22.8 9.8 35 196-231 107-141 (228)
183 PRK11866 2-oxoacid ferredoxin 29.3 4E+02 0.0086 23.5 11.4 123 105-234 62-190 (279)
184 COG0002 ArgC Acetylglutamate s 29.2 2.2E+02 0.0048 26.0 6.8 36 198-236 68-103 (349)
185 PLN00093 geranylgeranyl diphos 29.1 1.2E+02 0.0027 28.5 5.6 14 62-75 34-47 (450)
186 PRK11863 N-acetyl-gamma-glutam 29.1 3.6E+02 0.0078 24.2 8.2 37 197-236 47-83 (313)
187 smart00642 Aamy Alpha-amylase 28.7 62 0.0013 25.9 3.0 24 213-236 70-93 (166)
188 TIGR03365 Bsubt_queE 7-cyano-7 28.5 1.5E+02 0.0033 25.2 5.6 51 201-254 73-125 (238)
189 cd09013 BphC-JF8_N_like N-term 28.5 1.5E+02 0.0033 21.4 5.1 42 133-178 76-117 (121)
190 cd01493 APPBP1_RUB Ubiquitin a 28.3 5.1E+02 0.011 24.4 9.8 35 196-231 108-142 (425)
191 COG1159 Era GTPase [General fu 28.3 4.3E+02 0.0093 23.5 8.5 112 118-234 3-122 (298)
192 PRK09722 allulose-6-phosphate 27.6 86 0.0019 26.7 3.8 52 200-252 82-135 (229)
193 PTZ00058 glutathione reductase 27.5 98 0.0021 30.2 4.7 75 8-124 2-77 (561)
194 cd04824 eu_ALAD_PBGS_cysteine_ 27.5 1.5E+02 0.0033 26.5 5.4 151 68-235 106-273 (320)
195 cd01948 EAL EAL domain. This d 27.4 2.4E+02 0.0053 23.1 6.7 50 214-263 133-183 (240)
196 PRK10886 DnaA initiator-associ 27.4 2E+02 0.0043 23.8 5.9 58 196-254 105-165 (196)
197 PRK07324 transaminase; Validat 27.4 4.6E+02 0.01 23.7 8.9 35 200-234 153-194 (373)
198 COG2893 ManX Phosphotransferas 27.1 70 0.0015 25.1 3.0 28 100-127 66-93 (143)
199 cd05014 SIS_Kpsf KpsF-like pro 27.0 1.9E+02 0.0041 21.4 5.4 36 214-253 62-97 (128)
200 cd04823 ALAD_PBGS_aspartate_ri 27.0 2.2E+02 0.0048 25.6 6.3 151 68-235 108-272 (320)
201 TIGR01769 GGGP geranylgeranylg 26.8 2.4E+02 0.0051 23.6 6.3 35 201-235 25-62 (205)
202 PRK08134 O-acetylhomoserine am 26.7 1.4E+02 0.003 28.1 5.4 55 200-254 149-207 (433)
203 PRK11869 2-oxoacid ferredoxin 26.5 4.5E+02 0.0097 23.2 11.1 123 105-234 63-191 (280)
204 TIGR00065 ftsZ cell division p 26.1 2.8E+02 0.0062 25.2 7.1 108 101-229 23-134 (349)
205 cd00384 ALAD_PBGS Porphobilino 26.0 3.2E+02 0.0069 24.5 7.1 151 68-235 103-267 (314)
206 PF02593 dTMP_synthase: Thymid 25.8 1.2E+02 0.0027 25.6 4.4 43 195-238 46-88 (217)
207 KOG0257 Kynurenine aminotransf 25.4 1.4E+02 0.003 27.9 4.9 37 198-234 170-213 (420)
208 PLN02409 serine--glyoxylate am 25.3 5.3E+02 0.012 23.6 10.4 46 103-150 67-113 (401)
209 COG0794 GutQ Predicted sugar p 25.3 3.4E+02 0.0074 22.7 6.8 60 197-260 83-145 (202)
210 PRK03673 hypothetical protein; 25.1 93 0.002 28.9 3.8 72 130-233 20-94 (396)
211 COG1921 SelA Selenocysteine sy 25.0 1E+02 0.0022 28.6 4.0 43 215-257 176-223 (395)
212 PRK14619 NAD(P)H-dependent gly 24.9 3.8E+02 0.0082 23.6 7.7 25 124-148 7-31 (308)
213 TIGR01324 cysta_beta_ly_B cyst 24.9 2.3E+02 0.005 26.0 6.4 36 200-235 135-174 (377)
214 PF03853 YjeF_N: YjeF-related 24.5 1.1E+02 0.0025 24.4 3.9 45 102-146 36-83 (169)
215 cd05803 PGM_like4 This PGM-lik 24.4 3.8E+02 0.0083 25.1 8.0 24 102-125 180-204 (445)
216 TIGR02355 moeB molybdopterin s 24.2 4.5E+02 0.0098 22.4 10.2 36 196-232 110-145 (240)
217 cd09012 Glo_EDI_BRP_like_24 Th 24.0 2.3E+02 0.005 20.6 5.4 40 134-177 83-122 (124)
218 cd00851 MTH1175 This uncharact 23.9 1.1E+02 0.0024 21.6 3.5 39 104-147 49-87 (103)
219 PF00265 TK: Thymidine kinase; 23.9 3.9E+02 0.0085 21.6 9.0 119 122-252 5-134 (176)
220 PF00834 Ribul_P_3_epim: Ribul 23.8 1.3E+02 0.0028 25.0 4.2 51 200-252 80-132 (201)
221 COG2200 Rtn c-di-GMP phosphodi 23.2 2.2E+02 0.0047 24.5 5.7 52 213-264 136-188 (256)
222 TIGR02130 dapB_plant dihydrodi 22.9 3.9E+02 0.0084 23.5 7.0 102 120-237 2-104 (275)
223 PRK12549 shikimate 5-dehydroge 22.9 4.2E+02 0.0091 23.2 7.4 40 101-142 133-173 (284)
224 PF02579 Nitro_FeMo-Co: Dinitr 22.8 73 0.0016 22.2 2.2 42 101-147 36-77 (94)
225 PF00128 Alpha-amylase: Alpha 22.4 94 0.002 26.8 3.3 23 212-234 51-73 (316)
226 COG5014 Predicted Fe-S oxidore 22.4 4.4E+02 0.0096 21.6 7.4 82 199-282 90-184 (228)
227 TIGR00441 gmhA phosphoheptose 22.1 2.4E+02 0.0052 22.0 5.3 51 198-252 77-128 (154)
228 PRK08883 ribulose-phosphate 3- 22.0 3.2E+02 0.0069 23.0 6.2 81 195-282 123-217 (220)
229 PF08659 KR: KR domain; Inter 22.0 1.4E+02 0.0031 23.9 4.1 52 103-154 9-62 (181)
230 PF09140 MipZ: ATPase MipZ; I 22.0 72 0.0016 27.7 2.3 32 107-141 18-49 (261)
231 COG1433 Uncharacterized conser 22.0 2.2E+02 0.0048 21.6 4.7 43 100-147 47-89 (121)
232 PRK08745 ribulose-phosphate 3- 21.9 1.2E+02 0.0027 25.7 3.7 51 200-252 85-137 (223)
233 COG1646 Predicted phosphate-bi 21.7 3.1E+02 0.0067 23.5 6.0 38 199-236 40-80 (240)
234 PF13580 SIS_2: SIS domain; PD 21.7 1.3E+02 0.0027 23.2 3.5 34 198-231 101-135 (138)
235 TIGR03646 YtoQ_fam YtoQ family 21.6 1.5E+02 0.0033 23.0 3.7 30 204-233 3-32 (144)
236 PRK07714 hypothetical protein; 21.6 3.2E+02 0.0069 19.7 6.4 32 200-231 34-65 (100)
237 PRK12548 shikimate 5-dehydroge 21.6 5.5E+02 0.012 22.4 9.0 42 102-143 133-176 (289)
238 PRK06467 dihydrolipoamide dehy 21.5 1.4E+02 0.003 28.3 4.4 21 106-126 15-35 (471)
239 cd08354 Glo_EDI_BRP_like_13 Th 21.5 2.5E+02 0.0055 20.0 5.1 40 133-176 80-119 (122)
240 PF13986 DUF4224: Domain of un 21.4 1.2E+02 0.0026 18.8 2.7 26 252-279 2-27 (47)
241 PF03686 UPF0146: Uncharacteri 21.2 88 0.0019 24.0 2.4 79 134-235 26-104 (127)
242 PTZ00106 60S ribosomal protein 21.2 2.3E+02 0.005 21.0 4.6 33 200-232 41-73 (108)
243 cd08345 Fosfomycin_RP Fosfomyc 21.1 3E+02 0.0066 19.3 5.5 43 132-177 67-109 (113)
244 PRK06327 dihydrolipoamide dehy 21.1 3.4E+02 0.0073 25.6 7.0 42 107-148 195-242 (475)
245 cd05710 SIS_1 A subgroup of th 21.1 2.5E+02 0.0055 20.7 5.0 38 213-254 61-98 (120)
246 TIGR01851 argC_other N-acetyl- 20.9 4.3E+02 0.0093 23.7 7.1 38 196-236 45-82 (310)
247 PLN02968 Probable N-acetyl-gam 20.8 4.3E+02 0.0094 24.4 7.3 97 119-236 39-136 (381)
248 PRK04296 thymidine kinase; Pro 20.8 2.8E+02 0.006 22.5 5.6 53 200-252 78-137 (190)
249 PRK15394 4-deoxy-4-formamido-L 20.7 2.3E+02 0.005 25.2 5.3 40 100-140 14-53 (296)
250 TIGR00177 molyb_syn molybdenum 20.6 3.5E+02 0.0075 20.9 5.9 46 106-153 28-73 (144)
251 PRK13369 glycerol-3-phosphate 20.6 1.6E+02 0.0035 28.1 4.7 24 103-126 14-37 (502)
252 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.6 2.5E+02 0.0055 20.6 5.0 35 215-253 62-96 (126)
253 TIGR03127 RuMP_HxlB 6-phospho 20.6 2.4E+02 0.0052 22.5 5.1 35 214-252 87-121 (179)
254 PRK14454 ribosomal RNA large s 20.3 4.3E+02 0.0092 24.0 7.1 76 202-278 151-243 (342)
255 cd04795 SIS SIS domain. SIS (S 20.3 2E+02 0.0044 19.3 4.1 17 215-231 63-79 (87)
256 PRK00087 4-hydroxy-3-methylbut 20.2 8.6E+02 0.019 24.2 12.7 134 99-261 9-150 (647)
257 PRK08005 epimerase; Validated 20.2 1.4E+02 0.0031 25.1 3.7 51 200-252 81-133 (210)
258 COG0241 HisB Histidinol phosph 20.2 2.9E+02 0.0062 22.7 5.4 59 99-161 30-99 (181)
259 PRK13936 phosphoheptose isomer 20.1 3.1E+02 0.0068 22.5 5.8 53 198-251 109-162 (197)
260 cd08364 FosX FosX, a fosfomyci 20.1 2.4E+02 0.0053 21.0 4.8 42 133-177 79-120 (131)
No 1
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=2e-32 Score=243.90 Aligned_cols=211 Identities=33% Similarity=0.529 Sum_probs=182.9
Q ss_pred CCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCC
Q 023130 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (287)
Q Consensus 67 ~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd 146 (287)
|++|+|+|++++|+++.++++|.++..+...+....+||++.|+|++|++||.++.++|.+|+|.+|+.+++.|++.||+
T Consensus 2 m~~i~~iG~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~L~~~gV~ 81 (306)
T PRK11142 2 MGKLVVLGSINADHVLNLESFPRPGETLTGRHYQVAFGGKGANQAVAAARLGADIAFIACVGDDSIGESMRQQLAKDGID 81 (306)
T ss_pred CCcEEEECCceeeEEEEeCCCCCCCCeeEeccceecCCCcHHHHHHHHHhcCCcEEEEEEECCChhHHHHHHHHHHcCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCC
Q 023130 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (287)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g 226 (287)
++++.+.+ +.+|+.++++++++|+|+++++.++...++++++. ...+.++.++++++++..+.+.+.++++.|+++|
T Consensus 82 ~~~i~~~~--~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~g 158 (306)
T PRK11142 82 TAPVSVIK--GESTGVALIFVNDEGENSIGIHAGANAALTPALVE-AHRELIANADALLMQLETPLETVLAAAKIAKQHG 158 (306)
T ss_pred hhhEEEcC--CCCCCEEEEEECCCCCEEEEEeCCccccCCHHHHH-HHHhhhccCCEEEEeCCCCHHHHHHHHHHHHHcC
Confidence 99998887 77999999999989999999998876555544442 2235578999999998777788889999999999
Q ss_pred CcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 227 VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 227 ~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+++++|++.. ......+++++|++++|++|++.++|....+.++..++++.+.+
T Consensus 159 ~~v~~d~~~~-~~~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~~ 212 (306)
T PRK11142 159 TKVILNPAPA-RELPDELLALVDIITPNETEAEKLTGIRVEDDDDAAKAAQVLHQ 212 (306)
T ss_pred CEEEEECCCC-cccCHHHHhhCCEEcCCHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence 9999999854 34557899999999999999999999765566666666665543
No 2
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=6.2e-32 Score=243.02 Aligned_cols=219 Identities=28% Similarity=0.441 Sum_probs=186.8
Q ss_pred CCCCCCCCCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHH
Q 023130 60 PKNPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDA 139 (287)
Q Consensus 60 ~~~~~~~~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~ 139 (287)
+++-...+++|+|+|.+++|+++.++++|.+++.+........+||++.|+|+++++||.++.++|.+|+|.+|+.+++.
T Consensus 8 ~~~~~~~~~~vlviG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~la~lG~~~~~is~vG~D~~g~~i~~~ 87 (326)
T PTZ00292 8 ASHGGEAEPDVVVVGSSNTDLIGYVDRMPQVGETLHGTSFHKGFGGKGANQAVMASKLGAKVAMVGMVGTDGFGSDTIKN 87 (326)
T ss_pred hcccCCCCCCEEEEccceeeEEEecCCCCCCCCceeecCceeCCCCcHHHHHHHHHHcCCCeEEEEEECCChhHHHHHHH
Confidence 33445567889999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCceEEccCCCCCCceEEEEEc-CCCCeeEEEeCCCCCCCCCcccCchhHhhhcc-ccEEEEeCCCCHHHHHH
Q 023130 140 LSGCGVRLDYMNVVKDGGVPTGHAVVMLQ-SDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKK-AGIVLLQREIPDSVNIQ 217 (287)
Q Consensus 140 L~~~gVd~~~v~~~~~~~~~T~~~~v~i~-~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~-a~~v~~~g~~~~~~~~~ 217 (287)
|++.||+++++.+.+ +.+|+.++++++ .+|+|+++.+++++..+.++.+. ...+.+.+ ++++++++..+.+...+
T Consensus 88 l~~~GI~~~~~~~~~--~~~t~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~ 164 (326)
T PTZ00292 88 FKRNGVNTSFVSRTE--NSSTGLAMIFVDTKTGNNEIVIIPGANNALTPQMVD-AQTDNIQNICKYLICQNEIPLETTLD 164 (326)
T ss_pred HHHcCCChhhEEEcC--CCCCcEEEEEEeCCCCceEEEEeCCccccCCHHHHH-HHHHHhhhhCCEEEECCCCCHHHHHH
Confidence 999999999998777 679999999998 78999999998877665555443 22344667 99999988778777889
Q ss_pred HHHHHHhCCCcEEEeCCCCCC----CCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 218 VAKAARSAGVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 218 ~~~~a~~~g~~v~~D~~~~~~----~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+++.+++.|+++++|+++... +.++++++++|++++|++|++.++|....+.+++.++++.+.+
T Consensus 165 ~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~ 232 (326)
T PTZ00292 165 ALKEAKERGCYTVFNPAPAPKLAEVEIIKPFLKYVSLFCVNEVEAALITGMEVTDTESAFKASKELQQ 232 (326)
T ss_pred HHHHHHHcCCEEEEECCCCccccccccHHHHHhcCCEEcCCHHHHHHHhCCCCCChhHHHHHHHHHHH
Confidence 999999999999999986533 4567889999999999999999999765566666666665544
No 3
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=2.4e-31 Score=235.35 Aligned_cols=209 Identities=41% Similarity=0.625 Sum_probs=182.0
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+|+|++++|++..++++|..++..+......++||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~il~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (292)
T cd01174 1 KVVVVGSINVDLVTRVDRLPKPGETVLGSSFETGPGGKGANQAVAAARLGARVAMIGAVGDDAFGDELLENLREEGIDVS 80 (292)
T ss_pred CEEEEeeceeEEEEEecCCCCCCCcEEeccceecCCCcHHHHHHHHHHcCCceEEEEEEcCCccHHHHHHHHHHcCCCce
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCc
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~ 228 (287)
++.+.+ +.+|+.++++++++|+|+++.+.+++..++++.+. ...+.++.++++++++..+.+.+..+++.++++|.+
T Consensus 81 ~~~~~~--~~~t~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~~ 157 (292)
T cd01174 81 YVEVVV--GAPTGTAVITVDESGENRIVVVPGANGELTPADVD-AALELIAAADVLLLQLEIPLETVLAALRAARRAGVT 157 (292)
T ss_pred EEEEcC--CCCceeEEEEEcCCCceEEEEeCCCCCCCCHHHHH-HHHHhcccCCEEEEeCCCCHHHHHHHHHHHHhcCCE
Confidence 997777 67999999999989999999888876555444342 234568899999999888888889999999999999
Q ss_pred EEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 229 VIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 229 v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+++|++... ...+++++++|++++|++|++.|+|....+.+++.++++.+.+
T Consensus 158 v~~D~~~~~-~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 209 (292)
T cd01174 158 VILNPAPAR-PLPAELLALVDILVPNETEAALLTGIEVTDEEDAEKAARLLLA 209 (292)
T ss_pred EEEeCCCcC-cCcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 999998653 3457899999999999999999999866666666666666543
No 4
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=9e-32 Score=247.82 Aligned_cols=237 Identities=19% Similarity=0.270 Sum_probs=190.1
Q ss_pred eccCCCccchhhhhhhhcccCCCCCCCCCCCCCCEEEECCceeeeEeecCC-------CCCCCcEEEecC----------
Q 023130 36 TITNRQFPAHVIKCQCQRRDQNPVPKNPINTPPPLVVVGSANFDIYVEIDR-------LPKVGETVAAKT---------- 98 (287)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlviG~~~iD~~~~vd~-------~P~~~~~~~~~~---------- 98 (287)
.+|.++..+|.+..+..+...+++.+...+++.+|+++|++.+|+.+.++. +++.+......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~GNaLvDi~~~v~d~fL~~~~l~kg~m~li~~e~~~~l~~~l~ 81 (434)
T PRK15074 2 KFPGQRKSKHYFPVNARDPLLQQIQPENETSRTYIVGIDQTLVDIEAKVDDEFLERYGLSKGHSLVIEDDVAEALYQELK 81 (434)
T ss_pred CCCcccccccccccCCCCccccccccccCCCCCcEEEeCCceeeEEEeeCHHHHHHcCCCCCceEecCHHHHHHHHHHHh
Confidence 456667677776666777777778777788889999999999999999764 433333322211
Q ss_pred -----ceeecCchHHHHHHHHHHcC-CCcEEEEeecCC-chHHHHHHHHH--hCCCCCCceEEccCCCCCCceEEEEEcC
Q 023130 99 -----SQTLAGGKGANQAACGAKLS-HPTYFVGQVGED-ANGKLITDALS--GCGVRLDYMNVVKDGGVPTGHAVVMLQS 169 (287)
Q Consensus 99 -----~~~~~GG~a~N~A~~la~LG-~~~~lig~vG~D-~~G~~i~~~L~--~~gVd~~~v~~~~~~~~~T~~~~v~i~~ 169 (287)
....+||+++|+|+++++|| .++.|+|+||+| .+|+++++.|+ +.||+++++...+ + +||.|++++++
T Consensus 82 ~~~~~~~~~~GGsaaNtA~~lArLGG~~~~fig~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~--~-~TG~~~VlV~~ 158 (434)
T PRK15074 82 QNNLITHEFAGGTIGNTLHNYSVLADDRSVLLGVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD--G-PIGRCFTLISE 158 (434)
T ss_pred hccccccccCCCHHHHHHHHHHHcCCCCeEEEEEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC--C-CCEEEEEEECC
Confidence 35569999999999999996 999999999999 79999999997 6899999987654 4 89999999999
Q ss_pred CCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCC--------CHHHHHHHHHHHHhCCCcEEEeCCCCCC---
Q 023130 170 DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI--------PDSVNIQVAKAARSAGVPVIFDAGGMDA--- 238 (287)
Q Consensus 170 ~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~--------~~~~~~~~~~~a~~~g~~v~~D~~~~~~--- 238 (287)
+|+|+++.++|++..++++++.. +.++.++++|+++.. ..+++.++++.|+++|++|+||++....
T Consensus 159 dGeRt~~t~~GA~~~Lt~edld~---~~i~~a~ilyl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~ 235 (434)
T PRK15074 159 DGERTFAISPGHMNQLRPESIPE---DVIAGASALVLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIED 235 (434)
T ss_pred CCCEEEEEecChhhcCChhHCCH---hHhccCCEEEEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhccc
Confidence 99999999999988877777753 568899999998853 2567889999999999999999987521
Q ss_pred ---CCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 023130 239 ---PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280 (287)
Q Consensus 239 ---~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~ 280 (287)
.+.+.+++++|++++|++|++.|+|. .+++++.+.+.+..
T Consensus 236 ~~~~~~e~l~~~vDILf~NeeEa~~LtG~--~d~eea~~~L~~~~ 278 (434)
T PRK15074 236 NPQWWQEFLKEHVSILAMNEDEAEALTGE--SDPLLASDKALDWV 278 (434)
T ss_pred cHHHHHHHHHhcCCEEEcCHHHHHHHhCC--CCHHHHHHHHHcCC
Confidence 12344567999999999999999994 46777766665543
No 5
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.97 E-value=2.3e-30 Score=231.42 Aligned_cols=192 Identities=26% Similarity=0.380 Sum_probs=165.0
Q ss_pred CCCEEEECCceeeeEeecCCCC------CCCcEEEec-----------CceeecCchHHHHHHHHHHcCCCcEEEEeecC
Q 023130 67 PPPLVVVGSANFDIYVEIDRLP------KVGETVAAK-----------TSQTLAGGKGANQAACGAKLSHPTYFVGQVGE 129 (287)
Q Consensus 67 ~~~IlviG~~~iD~~~~vd~~P------~~~~~~~~~-----------~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~ 129 (287)
+.+|+|+|++++|++++++++| .+++.+... +....+||+++|+|+++++||.++.++|.+|+
T Consensus 1 ~~~v~~vG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~LG~~~~~i~~vG~ 80 (312)
T cd01168 1 RYDVLGLGNALVDILAQVDDAFLEKLGLKKGDMILADMEEQEELLAKLPVKYIAGGSAANTIRGAAALGGSAAFIGRVGD 80 (312)
T ss_pred CceEEEECCCeEEEEEecCHHHHHHcCCCCCceeecCHHHHHHHHHhcCccccCCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 3579999999999999999998 557777774 46889999999999999999999999999999
Q ss_pred CchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCC
Q 023130 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQRE 209 (287)
Q Consensus 130 D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~ 209 (287)
|.+|+++++.|+++||+++++... +.+|+.++++++++|+|+++.+.+++..++++++.. +.+++++++++++.
T Consensus 81 D~~g~~i~~~l~~~GV~~~~~~~~---~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~---~~l~~~~~v~~~~~ 154 (312)
T cd01168 81 DKLGDFLLKDLRAAGVDTRYQVQP---DGPTGTCAVLVTPDAERTMCTYLGAANELSPDDLDW---SLLAKAKYLYLEGY 154 (312)
T ss_pred ChhHHHHHHHHHHCCCccccccCC---CCCceEEEEEEcCCCceeeecccchhhcCChhHCCH---HHHccCCEEEEEEE
Confidence 999999999999999999988754 458999999999999999988888776666666643 55889999999874
Q ss_pred ---CCHHHHHHHHHHHHhCCCcEEEeCCCCC-----CCCchhhccCCcEEecCHHHHHhhcCC
Q 023130 210 ---IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGM 264 (287)
Q Consensus 210 ---~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dil~~Ne~E~~~l~g~ 264 (287)
.+.+.+..+++.+++.|+++++|++... ...+.++++++|++++|++|++.|+|.
T Consensus 155 ~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~ 217 (312)
T cd01168 155 LLTVPPEAILLAAEHAKENGVKIALNLSAPFIVQRFKEALLELLPYVDILFGNEEEAEALAEA 217 (312)
T ss_pred ecCCCHHHHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCC
Confidence 3457788999999999999999997421 123567889999999999999999995
No 6
>PTZ00247 adenosine kinase; Provisional
Probab=99.97 E-value=3e-30 Score=233.82 Aligned_cols=210 Identities=22% Similarity=0.304 Sum_probs=172.4
Q ss_pred CCCCCCEEEECCceeeeEeecCC------CCCCCcEEEecCc--------------eeecCchHHHHHHHHHHcC---C-
Q 023130 64 INTPPPLVVVGSANFDIYVEIDR------LPKVGETVAAKTS--------------QTLAGGKGANQAACGAKLS---H- 119 (287)
Q Consensus 64 ~~~~~~IlviG~~~iD~~~~vd~------~P~~~~~~~~~~~--------------~~~~GG~a~N~A~~la~LG---~- 119 (287)
+++.++|+|+|++++|+++++++ .|..|+.....+. ...+||+++|+|+++++|| .
T Consensus 2 ~~~~~~i~~iG~~~~D~~~~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~la~lg~~g~~ 81 (345)
T PTZ00247 2 SSAPKKLLGFGNPLLDISAHVSDEFLEKYGLELGSAILAEEKQLPIFEELESIPNVSYVPGGSALNTARVAQWMLQAPKG 81 (345)
T ss_pred CCCCceEEEECCceEEEEEeeCHHHHHHcCCCCCceeechHHHHHHHHHHHhccCceecCCCHHHHHHHHHHHHhcCCCC
Confidence 35678899999999999999996 5888888777664 7899999999999999885 5
Q ss_pred CcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchh-Hhhh
Q 023130 120 PTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDED-LEVV 198 (287)
Q Consensus 120 ~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~-~~~l 198 (287)
++.++|.||+|.+|+++++.|++.||+++++. .+ +.+|+.++++++ +|+|+++.+.+++..++++++.... .+.+
T Consensus 82 ~v~~ig~vG~D~~G~~i~~~l~~~GVd~~~~~-~~--~~~Tg~~~i~v~-~~~r~~~~~~ga~~~l~~~~i~~~~~~~~l 157 (345)
T PTZ00247 82 FVCYVGCVGDDRFAEILKEAAEKDGVEMLFEY-TT--KAPTGTCAVLVC-GKERSLVANLGAANHLSAEHMQSHAVQEAI 157 (345)
T ss_pred cEEEEEEeccchhHHHHHHHHHHcCCeeeccc-cC--CCCcEEEEEEEc-CCCcccccCcchhhcCChHHcCcHHHHHHH
Confidence 89999999999999999999999999998875 45 669999999997 4799998888988777777665421 2468
Q ss_pred ccccEEEEeCC---CCHHHHHHHHHHHHhCCCcEEEeCCCCC-----CCCchhhccCCcEEecCHHHHHhhcCCC---CC
Q 023130 199 KKAGIVLLQRE---IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMP---TD 267 (287)
Q Consensus 199 ~~a~~v~~~g~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dil~~Ne~E~~~l~g~~---~~ 267 (287)
.+++++++++. .+.+.+.++++.|+++|+++++|++... ...+.++++++|++++|++|++.|+|.. .+
T Consensus 158 ~~~~~v~~~g~~~~~~~~~~~~~~~~a~~~g~~v~~d~~~~~~~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~~ 237 (345)
T PTZ00247 158 KTAQLYYLEGFFLTVSPNNVLQVAKHARESGKLFCLNLSAPFISQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDTE 237 (345)
T ss_pred hhCCEEEEEEEEecccHHHHHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCcc
Confidence 89999999984 4678899999999999999999987431 1235678999999999999999999831 13
Q ss_pred CHHHHHHHHH
Q 023130 268 SYEQISEAVV 277 (287)
Q Consensus 268 ~~~~~~~~~~ 277 (287)
+.+++.+.+.
T Consensus 238 ~~~~~~~~l~ 247 (345)
T PTZ00247 238 DLKEIAARIA 247 (345)
T ss_pred CHHHHHHHHH
Confidence 3444444443
No 7
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.97 E-value=1.2e-29 Score=234.73 Aligned_cols=208 Identities=22% Similarity=0.265 Sum_probs=169.8
Q ss_pred CCCCCCCEEEECCceeeeEeecCC-------CCCCC-------------cEEEecCceeecCchHHHHHHHHHHcC----
Q 023130 63 PINTPPPLVVVGSANFDIYVEIDR-------LPKVG-------------ETVAAKTSQTLAGGKGANQAACGAKLS---- 118 (287)
Q Consensus 63 ~~~~~~~IlviG~~~iD~~~~vd~-------~P~~~-------------~~~~~~~~~~~~GG~a~N~A~~la~LG---- 118 (287)
....+.+|+++|++++|+++.+++ +|+.+ +++....+...+||+++|+|+++++||
T Consensus 65 ~~~~~~~vl~iG~~~vDi~~~v~~~fl~~~~lp~~~~~~i~~~~~~~l~e~~~~~~~~~~~GG~~~N~AvalarLG~~~~ 144 (426)
T PLN02813 65 AVPERWDVLGLGQAMVDFSGMVDDEFLERLGLEKGTRKVINHEERGKVLRALDGCSYKASAGGSLSNTLVALARLGSQSA 144 (426)
T ss_pred cCCCcceEEEeCCceeEEEEecCHHHHHHcCCCcCcccccCHHHHHHHHHHhhccCceEecCcHHHHHHHHHHHhccccc
Confidence 345778999999999999999999 99988 444566778999999999999999999
Q ss_pred ----CCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchh
Q 023130 119 ----HPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDED 194 (287)
Q Consensus 119 ----~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~ 194 (287)
.++.++|.||+|.+|+++++.|++.||++.++.+. +.+|+.++++++++|+|+++.+.|++..+..+++ .
T Consensus 145 ~~~~~~v~~ig~VG~D~~G~~i~~~L~~~GVd~~~~~~~---~~~Tg~~~ilv~~~gertii~~~Ga~~~l~~~~~---~ 218 (426)
T PLN02813 145 AGPALNVAMAGSVGSDPLGDFYRTKLRRANVHFLSQPVK---DGTTGTVIVLTTPDAQRTMLSYQGTSSTVNYDSC---L 218 (426)
T ss_pred cCCCCcEEEEEEeCCChHHHHHHHHHHHcCCcccceecC---CCCceEEEEEEcCCCCceeeeccCchhhCCcccc---C
Confidence 79999999999999999999999999999987654 4489999999999999999999998766554433 2
Q ss_pred HhhhccccEEEEeCC---CCH--HHHHHHHHHHHhCCCcEEEeCCCCC------CCCchhhccCCcEEecCHHHHHhhcC
Q 023130 195 LEVVKKAGIVLLQRE---IPD--SVNIQVAKAARSAGVPVIFDAGGMD------APIPQELLNFIDILSPNESELGRLTG 263 (287)
Q Consensus 195 ~~~l~~a~~v~~~g~---~~~--~~~~~~~~~a~~~g~~v~~D~~~~~------~~~~~~ll~~~dil~~Ne~E~~~l~g 263 (287)
.+.+++++++|+++. .+. +.+.++++.|++.|++|++|++... ..+.+.+++++|++++|++|++.|+|
T Consensus 219 ~~~i~~adiv~l~g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g 298 (426)
T PLN02813 219 ASAISKSRVLVVEGYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSCIERHRDDFWDVMGNYADILFANSDEARALCG 298 (426)
T ss_pred HHHHhcCCEEEEEeeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcchhhhhHHHHHHHHHhcCCEEEeCHHHHHHHhC
Confidence 356889999999873 332 5688899999999999999987531 11234556899999999999999998
Q ss_pred CCC-CCHHHHHHHH
Q 023130 264 MPT-DSYEQISEAV 276 (287)
Q Consensus 264 ~~~-~~~~~~~~~~ 276 (287)
... ++.+++.+.+
T Consensus 299 ~~~~~~~~~a~~~L 312 (426)
T PLN02813 299 LGSEESPESATRYL 312 (426)
T ss_pred CCCCCCHHHHHHHH
Confidence 532 2344444333
No 8
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.96 E-value=2e-28 Score=216.86 Aligned_cols=205 Identities=38% Similarity=0.588 Sum_probs=176.3
Q ss_pred CCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEc
Q 023130 74 GSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVV 153 (287)
Q Consensus 74 G~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~ 153 (287)
|++++|+++.++++|..++..+......++||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+++++.+.
T Consensus 1 G~~~~D~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~~~~~~ 80 (293)
T TIGR02152 1 GSINMDLVLRTDRLPKPGETVHGHSFQIGPGGKGANQAVAAARLGAEVSMIGKVGDDAFGDELLENLKSNGIDTEYVGTV 80 (293)
T ss_pred CCceEeEEEEeCCCCCCCCcEecCCceecCCCcHHHHHHHHHHCCCCEEEEEEecCCccHHHHHHHHHHcCCCeeEEEEc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 023130 154 KDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 154 ~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (287)
+ +.+|+.++++++++|+|+++.+.+++..+.++++. ...+.+..++++++++..+.+.+.++++.++++++++++|+
T Consensus 81 ~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~ 157 (293)
T TIGR02152 81 K--DTPTGTAFITVDDTGENRIVVVAGANAELTPEDID-AAEALIAESDIVLLQLEIPLETVLEAAKIAKKHGVKVILNP 157 (293)
T ss_pred C--CCCCceEEEEEcCCCCEEEEEECCcCCcCCHHHHH-HHHhhhccCCEEEEecCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 6 67899999999988999998888776555544443 23456789999999988888888999999999999999999
Q ss_pred CCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 234 GGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 234 ~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+.........+++++|++++|++|++.|++....+.+++.+.++.+.+
T Consensus 158 ~~~~~~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 205 (293)
T TIGR02152 158 APAIKDLDDELLSLVDIITPNETEAEILTGIEVTDEEDAEKAAEKLLE 205 (293)
T ss_pred CcCcccchHHHHhcCCEEccCHHHHHHHhCCCCCCcchHHHHHHHHHH
Confidence 865333457889999999999999999999755555555555555543
No 9
>PRK09850 pseudouridine kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=220.80 Aligned_cols=211 Identities=22% Similarity=0.277 Sum_probs=165.6
Q ss_pred CCCCCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhC
Q 023130 64 INTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGC 143 (287)
Q Consensus 64 ~~~~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~ 143 (287)
+++++.|+|+|++++|+++.++.. ..++..........+||+++|+|+++++||.++.++|.||+|.+|+++++.|++.
T Consensus 1 ~~~~~~i~~iG~~~vD~~~~~~~~-~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~ig~vG~D~~g~~i~~~l~~~ 79 (313)
T PRK09850 1 MREKDYVVIIGSANIDVAGYSHES-LNYADSNPGKIKFTPGGVGRNIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQS 79 (313)
T ss_pred CCCCCcEEEECcEEEeeeccCCCc-CcCCCCCceEEEEeCCcHHHHHHHHHHHcCCCeEEEEEecCchhHHHHHHHHHHc
Confidence 356779999999999999987654 3444334455788999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeC-CCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHH
Q 023130 144 GVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG-GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAA 222 (287)
Q Consensus 144 gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~-ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a 222 (287)
||+++++.+.+ +.+|+.++++++++|+|++.++. ++...+.+..+. ...+.+++++++++++..+.+.+..+++.+
T Consensus 80 gVd~~~~~~~~--~~~T~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (313)
T PRK09850 80 GVYVDKCLIVP--GENTSSYLSLLDNTGEMLVAINDMNISNAITAEYLA-QHREFIQRAKVIVADCNISEEALAWILDNA 156 (313)
T ss_pred CCCchheeecC--CCCceEEEEEecCCCCEEEEecCchHhhhCCHHHHH-HHHHHHhcCCEEEEeCCCCHHHHHHHHHhc
Confidence 99999988877 77899999999999999886653 322222222221 223457889999999888877777676644
Q ss_pred HhCCCcEEEeCCCCCC-CCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 023130 223 RSAGVPVIFDAGGMDA-PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280 (287)
Q Consensus 223 ~~~g~~v~~D~~~~~~-~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~ 280 (287)
.|+++++|++..+. ..+.++++++|++++|++|++.|+|....+.+++.++++.+.
T Consensus 157 --~g~~v~~D~~~~~~~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~~~~~~~~l~ 213 (313)
T PRK09850 157 --ANVPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFH 213 (313)
T ss_pred --cCCCEEEEcCCHHHHHHHHhhhccceEEccCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 58999999986421 235678899999999999999999976555566666666654
No 10
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=1.7e-28 Score=217.01 Aligned_cols=189 Identities=26% Similarity=0.358 Sum_probs=157.9
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+|+|++++|++..++++|..+...........+|| +.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~~D~i~~~~~~~~~~~~~~~~~~~~~~GG-~~Nva~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 79 (289)
T cd01944 1 KVLVIGAAVVDIVLDVDKLPASGGDIEAKSKSYVIGG-GFNVMVAASRLGIPTVNAGPLGNGNWADQIRQAMRDEGIEIL 79 (289)
T ss_pred CeEEEcceeEEEEeecccCCCCCCccccceeeeccCc-HHHHHHHHHHcCCCeEEEEEecCChHHHHHHHHHHHcCCccc
Confidence 5899999999999999999999999999989999999 999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCC------HHHHHHHHHHH
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIP------DSVNIQVAKAA 222 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~------~~~~~~~~~~a 222 (287)
++.+. +.+|+.++++++++|+|+++.+.+++..+.++.+.. ..+.+++++|+++... .+.+.++++.+
T Consensus 80 ~~~~~---~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (289)
T cd01944 80 LPPRG---GDDGGCLVALVEPDGERSFISISGAEQDWSTEWFAT---LTVAPYDYVYLSGYTLASENASKVILLEWLEAL 153 (289)
T ss_pred ccccc---CCCCeEEEEEEcCCCceEEEEeCCccCCCCHHHhcc---ccCCCCCEEEEeCccccCcchhHHHHHHHHHhc
Confidence 88774 458898889999899999988888765544444432 1367899999987431 34455555554
Q ss_pred HhCCCcEEEeCCCCCC----CCchhhccCCcEEecCHHHHHhhcCCC
Q 023130 223 RSAGVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 223 ~~~g~~v~~D~~~~~~----~~~~~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
+ .+.++++|++.+.. ..++++++++|++++|++|++.|+|..
T Consensus 154 ~-~~~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~ 199 (289)
T cd01944 154 P-AGTTLVFDPGPRISDIPDTILQALMAKRPIWSCNREEAAIFAERG 199 (289)
T ss_pred c-CCCEEEEcCcccccccCHHHHHHHHhcCCEEccCHHHHHHHhCCC
Confidence 3 57899999986532 235678899999999999999999964
No 11
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.96 E-value=1.7e-28 Score=229.99 Aligned_cols=212 Identities=19% Similarity=0.217 Sum_probs=164.1
Q ss_pred CCCCCCCCEEEECCceeeeEeecCCCCCCCcEEE-----------ecCceeecCchHHHHHHHHHHcCCCcEEEEeecCC
Q 023130 62 NPINTPPPLVVVGSANFDIYVEIDRLPKVGETVA-----------AKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGED 130 (287)
Q Consensus 62 ~~~~~~~~IlviG~~~iD~~~~vd~~P~~~~~~~-----------~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D 130 (287)
....+|++|+++|++++|+++.++++|.+++... .......+|| ++|+|+++++||.++.++|.||+|
T Consensus 67 ~~~~~~~~vl~lG~~~vD~i~~V~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvAvaLarLG~~v~lig~VG~D 145 (470)
T PLN02341 67 SAAGKEIDVATLGNLCVDIVLPVPELPPPSREERKAYMEELAASPPDKKSWEAGG-NCNFAIAAARLGLRCSTIGHVGDE 145 (470)
T ss_pred ccccccccEEEECCcceeEEEecCCCCCCCHHHHHHHHHhhcccccccceecCCh-HHHHHHHHHHcCCCeEEEEEecCc
Confidence 4456778999999999999999999998886422 1234566788 699999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCceEEccCC------CCCCceEEEEEcCCCCeeEEEeCCCCCCCCC---cccCchhHhhhccc
Q 023130 131 ANGKLITDALSGCGVRLDYMNVVKDG------GVPTGHAVVMLQSDGQNSIIIVGGTNMSCWP---EKFGDEDLEVVKKA 201 (287)
Q Consensus 131 ~~G~~i~~~L~~~gVd~~~v~~~~~~------~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~---~~l~~~~~~~l~~a 201 (287)
.+|+++++.|++.||++.++...++. ..+|+.++++++++|++.++...+....... ..+.....+.++.+
T Consensus 146 ~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~a 225 (470)
T PLN02341 146 IYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAKMAIRQS 225 (470)
T ss_pred HHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHHhhhhcC
Confidence 99999999999999999988765410 1469999999999999876543332211111 12223334568899
Q ss_pred cEEEEeCC----CCHHHHHHHHHHHHhCCCcEEEeCCCCCC----------CCchhhccCCcEEecCHHHHHhhcCCCCC
Q 023130 202 GIVLLQRE----IPDSVNIQVAKAARSAGVPVIFDAGGMDA----------PIPQELLNFIDILSPNESELGRLTGMPTD 267 (287)
Q Consensus 202 ~~v~~~g~----~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----------~~~~~ll~~~dil~~Ne~E~~~l~g~~~~ 267 (287)
+++++++. .+.+.+.++++.|++.|++|++|+++... ..++++++++|++++|++|++.|+|. .
T Consensus 226 div~lsg~~~~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~l~g~--~ 303 (470)
T PLN02341 226 KALFCNGYVFDELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEALTGI--R 303 (470)
T ss_pred CEEEEeceeCCcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHHHhCC--C
Confidence 99999985 45778899999999999999999986521 12567899999999999999999995 3
Q ss_pred CHHHHHHHH
Q 023130 268 SYEQISEAV 276 (287)
Q Consensus 268 ~~~~~~~~~ 276 (287)
+.+++.+.+
T Consensus 304 ~~~~a~~~l 312 (470)
T PLN02341 304 NPILAGQEL 312 (470)
T ss_pred CHHHHHHHH
Confidence 455444333
No 12
>PLN02323 probable fructokinase
Probab=99.96 E-value=3e-28 Score=219.43 Aligned_cols=203 Identities=22% Similarity=0.276 Sum_probs=162.7
Q ss_pred CCCCCCCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHH
Q 023130 62 NPINTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALS 141 (287)
Q Consensus 62 ~~~~~~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~ 141 (287)
++..+.++|+++|+.++|++..++++|.. ....+...+||+++|+|+++++||.++.++|.+|+|.+|+++++.|+
T Consensus 5 ~~~~~~~~i~~iG~~~vD~~~~~~~~~~~----~~~~~~~~~GG~~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~L~ 80 (330)
T PLN02323 5 PSTAESSLVVCFGEMLIDFVPTVSGVSLA----EAPAFKKAPGGAPANVAVGISRLGGSSAFIGKVGDDEFGHMLADILK 80 (330)
T ss_pred CccCCCCcEEEechhhhhhccCCCCCCcc----cccceeecCCChHHHHHHHHHhcCCceeEEEEecCChhHHHHHHHHH
Confidence 44556678999999999999887776642 24456789999999999999999999999999999999999999999
Q ss_pred hCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeC--CCCCCCCCcccCchhHhhhccccEEEEeCCC-----CHHH
Q 023130 142 GCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG--GTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSV 214 (287)
Q Consensus 142 ~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~--ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~-----~~~~ 214 (287)
+.||+++++.+.+ +.+|+.++++++++|+|+++++. +++..+++++++. +.++.++++++.+.. ....
T Consensus 81 ~~GI~~~~v~~~~--~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 155 (330)
T PLN02323 81 KNGVNNEGVRFDP--GARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDL---DLIRKAKIFHYGSISLITEPCRSA 155 (330)
T ss_pred HcCCCCcceEEcC--CCCceEEEEEECCCCceeEEeecCCchhccCChHHCCh---HHHccCCEEEEechhccCchHHHH
Confidence 9999999999888 77899999999989999988875 4444455555542 457788998876532 1245
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCC---------CchhhccCCcEEecCHHHHHhhcCCCCCCHHHHH
Q 023130 215 NIQVAKAARSAGVPVIFDAGGMDAP---------IPQELLNFIDILSPNESELGRLTGMPTDSYEQIS 273 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~---------~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~ 273 (287)
...+++.+++.|.+|++|++.+... .+.++++++|++++|++|++.++|....+.+++.
T Consensus 156 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~ 223 (330)
T PLN02323 156 HLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDTVV 223 (330)
T ss_pred HHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHHHH
Confidence 6788999999999999999854221 2456788999999999999999996544444443
No 13
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.96 E-value=8.2e-28 Score=211.95 Aligned_cols=208 Identities=24% Similarity=0.350 Sum_probs=168.3
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+|+|++++|++..++++|..++..........+||+++|+|.+|++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~iD~~~~~~~~p~~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~ 80 (284)
T cd01945 1 RVLGVGLAVLDLIYLVASFPGGDGKIVATDYAVIGGGNAANAAVAVARLGGQARLIGVVGDDAIGRLILAELAAEGVDTS 80 (284)
T ss_pred CEEEECcceeEEEEEeccCCCCCCeEEEeEEEEecCCHHHHHHHHHHHcCCCeEEEEEecCchHHHHHHHHHHHcCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCc
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~ 228 (287)
++...+ +.+|+.+++ ++.+|+++...+.+.......+++.. +.+.+++++++++..+ +...++++.+++.|.+
T Consensus 81 ~~~~~~--~~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~g~~ 153 (284)
T cd01945 81 FIVVAP--GARSPISSI-TDITGDRATISITAIDTQAAPDSLPD---AILGGADAVLVDGRQP-EAALHLAQEARARGIP 153 (284)
T ss_pred ceeecC--CCCCccEEE-EccCCCceEEEecCCCCCCCcccCCH---HHhCcCCEEEEcCCCH-HHHHHHHHHHHHcCCC
Confidence 999887 667888877 45577777777766555555555543 3478999999998655 5578899999999998
Q ss_pred EEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhhhcccC
Q 023130 229 VIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVG 286 (287)
Q Consensus 229 v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~~v~v~ 286 (287)
+++|.++......+++++++|++++|++|++.++|.. +. ++.+...+...+.+|.
T Consensus 154 v~~~~~~~~~~~~~~~~~~~dil~~n~~e~~~l~~~~--~~-~~~~~l~~~~~~~viv 208 (284)
T cd01945 154 IPLDLDGGGLRVLEELLPLADHAICSENFLRPNTGSA--DD-EALELLASLGIPFVAV 208 (284)
T ss_pred eeEeccCCcccchHHHhccCCEEEeChhHHhhhcCCC--HH-HHHHHHHhcCCcEEEE
Confidence 7777654332226788999999999999999999853 22 3444444333344443
No 14
>PLN02967 kinase
Probab=99.96 E-value=3.2e-28 Score=229.27 Aligned_cols=193 Identities=18% Similarity=0.168 Sum_probs=156.2
Q ss_pred CCEEEECCceeeeEeecCCC--CCCC--------cEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHH
Q 023130 68 PPLVVVGSANFDIYVEIDRL--PKVG--------ETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLIT 137 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd~~--P~~~--------~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~ 137 (287)
+.|+|+|++++|++-..... ...+ .......+...+||+++|+|+++++||.++.|+|+||+|.+|++++
T Consensus 197 ~~V~~iGe~l~D~~p~g~~~~~l~~~~~~~~~~~~~s~~~~~~~~~GGa~aNVAvaLARLG~~v~fIg~VGdD~~G~~ll 276 (581)
T PLN02967 197 PLVCCFGAAQHAFVPSGRPANRLLDYEIHERMKDAFWAPEKFVRAPGGSAGGVAIALASLGGKVAFMGKLGDDDYGQAML 276 (581)
T ss_pred CeEEEECchhheecccCccchhhhhccccccccccccCccceeeecCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHH
Confidence 46999999999997321000 0000 0223456778899999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEE-EeCCCCCCCCCcccCchhHhhhccccEEEEeCCC-----C
Q 023130 138 DALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSII-IVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----P 211 (287)
Q Consensus 138 ~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~-~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~-----~ 211 (287)
+.|++.||+++++++.+ +.+|+.++++++++|+++++ ..++++..+..+++.. +.+.+++++|+++.. +
T Consensus 277 ~~L~~~GVDts~v~~~~--~~~Tgla~V~vd~~Gerr~~~~~~gAd~~L~~~di~~---~~l~~A~i~hfgg~~ll~e~~ 351 (581)
T PLN02967 277 YYLNVNKVQTRSVCIDG--KRATAVSTMKIAKRGRLKTTCVKPCAEDSLSKSEINI---DVLKEAKMFYFNTHSLLDPTM 351 (581)
T ss_pred HHHHHcCCcccceEecC--CCCCcEEEEEECCCCceEEEEecCChhhhCChhhcCH---hHhcCCCEEEEeCchhcccch
Confidence 99999999999999988 78999999999999998775 3567776666665543 457899999998742 2
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCCCC---------chhhccCCcEEecCHHHHHhhcCCC
Q 023130 212 DSVNIQVAKAARSAGVPVIFDAGGMDAPI---------PQELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 212 ~~~~~~~~~~a~~~g~~v~~D~~~~~~~~---------~~~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
.+++.++++.|+++|++|+||++.+...| +.++++++|||++|++|++.|+|..
T Consensus 352 ~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~ 414 (581)
T PLN02967 352 RSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIE 414 (581)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCC
Confidence 46788999999999999999999653222 4578899999999999999999953
No 15
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=1.3e-27 Score=209.98 Aligned_cols=187 Identities=29% Similarity=0.357 Sum_probs=161.4
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+|+|++++|+++.++++|..++..........+||++.|+|.++++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~~D~~~~v~~~p~~~~~~~~~~~~~~~GG~~~Nva~~l~~lg~~~~~~~~vG~D~~g~~i~~~l~~~gi~~~ 80 (279)
T cd01942 1 DVAVVGHLNYDIILKVESFPGPFESVLVKDLRREFGGSAGNTAVALAKLGLSPGLVAAVGEDFHGRLYLEELREEGVDTS 80 (279)
T ss_pred CEEEEecceeeeEeecccCCCCCceEecceeeecCCcHHHHHHHHHHHcCCCceEEEEecCCcchHHHHHHHHHcCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCc
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~ 228 (287)
++...+ +.+|+.++++++++|+|++..++++...+.+++ ..+.+.+++++++++.. .+.++++.+++.|++
T Consensus 81 ~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~ 151 (279)
T cd01942 81 HVRVVD--EDSTGVAFILTDGDDNQIAYFYPGAMDELEPND----EADPDGLADIVHLSSGP---GLIELARELAAGGIT 151 (279)
T ss_pred ceEEcC--CCCcceEEEEEcCCCCEEEEecCCcccccccCC----chhhhcccCEEEeCCch---HHHHHHHHHHHcCCe
Confidence 997776 668999999999889998887777665544333 22567889999998753 467888888888999
Q ss_pred EEEeCCCCCC----CCchhhccCCcEEecCHHHH---HhhcCC
Q 023130 229 VIFDAGGMDA----PIPQELLNFIDILSPNESEL---GRLTGM 264 (287)
Q Consensus 229 v~~D~~~~~~----~~~~~ll~~~dil~~Ne~E~---~~l~g~ 264 (287)
+++|+++... +.++.+++++|++++|++|+ +.++|.
T Consensus 152 v~~D~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 194 (279)
T cd01942 152 VSFDPGQELPRLSGEELEEILERADILFVNDYEAELLKERTGL 194 (279)
T ss_pred EEEcchhhhhhccHHHHHHHHhhCCEEecCHHHHHHHHhhcCC
Confidence 9999986432 22577889999999999999 566664
No 16
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.96 E-value=1.4e-27 Score=213.40 Aligned_cols=191 Identities=33% Similarity=0.527 Sum_probs=167.8
Q ss_pred CEEEECCceeeeEee-cCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 69 PLVVVGSANFDIYVE-IDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 69 ~IlviG~~~iD~~~~-vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
+|+++|+.++|++.+ .+.+|..++..........+||++.|+|+++++||.++.|+|+||+|.+|+.+++.|++.|||+
T Consensus 1 ~v~~iG~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~N~A~~~a~lG~~~~~~~~vG~D~~g~~~~~~l~~~GVd~ 80 (311)
T COG0524 1 DVVVIGEANVDLIAQVVDRLPEPGETVLGDFFKVAGGGKGANVAVALARLGAKVALIGAVGDDDFGEFLLEELRKEGVDT 80 (311)
T ss_pred CEEEECchhhheehhhccCCCCCcccccccceeecCCchHHHHHHHHHHcCCceEEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 489999999999996 8889888888888778999999999999999999999999999999999999999999999999
Q ss_pred CceEEccCCCCCCceEEEEEcCCCCeeEEEeCCC-CCCCCCcccCchhHhhhccccEEEEeCCC---CHHHHHHHHHHHH
Q 023130 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT-NMSCWPEKFGDEDLEVVKKAGIVLLQREI---PDSVNIQVAKAAR 223 (287)
Q Consensus 148 ~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga-~~~~~~~~l~~~~~~~l~~a~~v~~~g~~---~~~~~~~~~~~a~ 223 (287)
+++.... +.+|+.+.++++++|+|++.+++++ ...++++.+.. +.+..++++|+.+.. +++....+++.++
T Consensus 81 ~~~~~~~--~~~tg~~~i~~~~~g~r~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ 155 (311)
T COG0524 81 SHVVTDE--GATTGLALILVDEDGERTFVFYRGAAALLLTPEDLDE---DELAGADVLHISGIQLEIPPEALLAALELAK 155 (311)
T ss_pred ceEEEcC--CCcceEEEEEEcCCCceeEEEECCcccccCChHHcCh---HHHhhcCeeeEEEeecCCChHHHHHHHHHHH
Confidence 9999988 7799999999999999999999985 44455554542 456788999887643 3378999999999
Q ss_pred hCCCcEEEeCCCCCC----CCchhhccCCcEEecCHHHHHhhcCC
Q 023130 224 SAGVPVIFDAGGMDA----PIPQELLNFIDILSPNESELGRLTGM 264 (287)
Q Consensus 224 ~~g~~v~~D~~~~~~----~~~~~ll~~~dil~~Ne~E~~~l~g~ 264 (287)
+.|.++++|++.... +.+..+++++|++++|++|++.++|.
T Consensus 156 ~~g~~v~~d~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~ 200 (311)
T COG0524 156 AAGVTVSFDLNPRPALWDRELLEELLALADILFPNEEEAELLTGL 200 (311)
T ss_pred HcCCeEEEecCCCccccchhhHHHHHhhCCEEeCCHHHHHHHhCC
Confidence 999999999997753 34688999999999999999999995
No 17
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.96 E-value=1e-27 Score=223.76 Aligned_cols=191 Identities=17% Similarity=0.196 Sum_probs=149.7
Q ss_pred CCEEEECCceeeeEeecCCCCCCC------c-----EEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHH
Q 023130 68 PPLVVVGSANFDIYVEIDRLPKVG------E-----TVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLI 136 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd~~P~~~------~-----~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i 136 (287)
+.|+|+|++.+|++-.... +..+ . ......+...+||+++|+|++++|||.++.|+|+||+|.+|+++
T Consensus 126 ~~v~~~Ge~liDf~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~GGa~aNVAvaLARLG~~vafIG~VGdD~fG~~l 204 (496)
T PLN02543 126 PLVCCFGAVQKEFVPTVRV-HDNQMHPDMYSQWKMLQWDPPEFARAPGGPPSNVAISHVRLGGRAAFMGKVGDDDFGEEL 204 (496)
T ss_pred CeEEEeChhhhhhcCCCcc-cccccccccccccccccccCCeeEeccCcHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHH
Confidence 4599999999999843110 0000 0 01245577899999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCceEEccCCCCCCceEEEEEc--CCCCeeEE-E-eCCCCCCCCCcccCchhHhhhccccEEEEeCCC--
Q 023130 137 TDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQ--SDGQNSII-I-VGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-- 210 (287)
Q Consensus 137 ~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~--~~Ger~~~-~-~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~-- 210 (287)
++.|++.|||++++.+.+ +.+|+.+++.++ ++| +.++ + ..+++..+.++++.. +.+..++++|+++..
T Consensus 205 ~~~L~~~GVDts~v~~~~--~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~---~~l~~a~ilh~~~~~l~ 278 (496)
T PLN02543 205 VLMMNKERVQTRAVKFDE--NAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNL---AVLKEARMFHFNSEVLT 278 (496)
T ss_pred HHHHHHcCCcccceEecC--CCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCH---hHhCCCceEEECChhhc
Confidence 999999999999999988 789999999984 445 4443 2 335555555555543 557889999998753
Q ss_pred -C--HHHHHHHHHHHHhCCCcEEEeCCCCCCCC---------chhhccCCcEEecCHHHHHhhcCCC
Q 023130 211 -P--DSVNIQVAKAARSAGVPVIFDAGGMDAPI---------PQELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 211 -~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~~---------~~~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
+ .+++.++++.|+++|++|+||++.+..-| +.++++++||+++|++|++.|+|.+
T Consensus 279 ~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~ 345 (496)
T PLN02543 279 SPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDED 345 (496)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCC
Confidence 2 36788999999999999999999653212 4567899999999999999999853
No 18
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.95 E-value=1.4e-27 Score=211.35 Aligned_cols=199 Identities=25% Similarity=0.317 Sum_probs=161.0
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+|+|++++|++...+ ++.+...+....+||++.|+|+++++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~i~~iG~~~iD~~~~~~-----~~~~~~~~~~~~~GG~~~N~a~~la~lg~~~~~i~~vG~D~~g~~i~~~l~~~gi~~~ 75 (294)
T cd01166 1 DVVTIGEVMVDLSPPGG-----GRLEQADSFRKFFGGAEANVAVGLARLGHRVALVTAVGDDPFGRFILAELRREGVDTS 75 (294)
T ss_pred CeEEechhheeeecCCC-----CccchhhccccccCChHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHcCCCCc
Confidence 58999999999986543 4456667788899999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCC--CCCCCCcccCchhHhhhccccEEEEeCCCC------HHHHHHHHH
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT--NMSCWPEKFGDEDLEVVKKAGIVLLQREIP------DSVNIQVAK 220 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga--~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~------~~~~~~~~~ 220 (287)
++.+.+ +.+|+.+++.++++|+|++..+.+. ...+..+++. .+.+++++++++++..+ .+.+.++++
T Consensus 76 ~~~~~~--~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 150 (294)
T cd01166 76 HVRVDP--GRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLD---EAALAGADHLHLSGITLALSESAREALLEALE 150 (294)
T ss_pred eEEEeC--CCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCC---HHHHhCCCEEEEcCcchhhCHHHHHHHHHHHH
Confidence 998877 7799999999988899988877542 2233333333 35678999999998654 266788999
Q ss_pred HHHhCCCcEEEeCCCCCC--------CCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHH
Q 023130 221 AARSAGVPVIFDAGGMDA--------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKC 279 (287)
Q Consensus 221 ~a~~~g~~v~~D~~~~~~--------~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l 279 (287)
.+++.++++++|++.... .....+++++|++++|+.|++.++|.. ..+++.+.++++
T Consensus 151 ~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~--~~~~~~~~~~~l 215 (294)
T cd01166 151 AAKARGVTVSFDLNYRPKLWSAEEAREALEELLPYVDIVLPSEEEAEALLGDE--DPTDAAERALAL 215 (294)
T ss_pred HHHHcCCEEEECCCCcchhcChHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCC--CchhHHHHHHhh
Confidence 999999999999985421 124567899999999999999999963 244566666653
No 19
>PRK09954 putative kinase; Provisional
Probab=99.95 E-value=4.9e-27 Score=214.18 Aligned_cols=205 Identities=24% Similarity=0.303 Sum_probs=160.1
Q ss_pred CCEEEECCceeeeEeecC-CCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCC
Q 023130 68 PPLVVVGSANFDIYVEID-RLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd-~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd 146 (287)
..|+|+|++++|+++.++ .+|..++ ........+||++.|+|++++|||.++.++|.||+|.+|+++++.|++.|||
T Consensus 58 ~~v~viG~~~vD~~~~~~~~~p~~~~--~~~~~~~~~GG~~~NvA~~larLG~~v~~ig~VG~D~~G~~i~~~l~~~GVd 135 (362)
T PRK09954 58 EYCVVVGAINMDIRGMADIRYPQAAS--HPGTIHCSAGGVGRNIAHNLALLGRDVHLLSAIGDDFYGETLLEETRRAGVN 135 (362)
T ss_pred ccEEEEEEEEEEEEEeeCCcCcCCCC--CCceEEEecCcHHHHHHHHHHHcCCCeEEEEEECCCHHHHHHHHHHHHcCCC
Confidence 489999999999999988 7887665 4456788899999999999999999999999999999999999999999999
Q ss_pred CCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCC--CCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHh
Q 023130 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTN--MSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARS 224 (287)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~--~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~ 224 (287)
++++.+.+ +.+|+.++++++++++ +++.+.+.. ..++++.+. ...+.+..++++++++..+.+.+..+++.+
T Consensus 136 ~~~~~~~~--~~~T~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a-- 209 (362)
T PRK09954 136 VSGCIRLH--GQSTSTYLAIANRQDE-TVLAINDTHILQQLTPQLLN-GSRDLIRHAGVVLADCNLTAEALEWVFTLA-- 209 (362)
T ss_pred ccceEEcC--CCCCeEEEEEEcCCCC-EEEEEcCchhhhcCCHHHHH-HHHHHHhcCCEEEEECCCCHHHHHHHHHhC--
Confidence 99999888 7789999888876554 444444322 222222221 223446789999999888877666666655
Q ss_pred CCCcEEEeCCCCC-CCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 023130 225 AGVPVIFDAGGMD-APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280 (287)
Q Consensus 225 ~g~~v~~D~~~~~-~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~ 280 (287)
+++++++|+.+.. .....++++++|++++|++|++.|+|....+.++..++++.+.
T Consensus 210 ~~~~v~~D~~~~~~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~~~~~~~~l~ 266 (362)
T PRK09954 210 DEIPVFVDTVSEFKAGKIKHWLAHIHTLKPTQPELEILWGQAITSDADRNAAVNALH 266 (362)
T ss_pred CCCcEEEECCCHHHhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 4799999997642 1235678999999999999999999975555555555555554
No 20
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.95 E-value=3.8e-27 Score=208.52 Aligned_cols=195 Identities=13% Similarity=0.168 Sum_probs=160.1
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
.|+|+|++++|+++.++++|..++.........++||+++|+|+++++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~vD~~~~v~~~p~~~~~~~~~~~~~~~GG~a~NvA~~la~lG~~~~~~~~vG~D~~g~~~~~~l~~~gId~~ 80 (290)
T cd01939 1 AVLCVGLTVLDFITTVDKYPFEDSDQRTTNGRWQRGGNASNSCTVLRLLGLSCEFLGVLSRGPVFESLLDDFQSRGIDIS 80 (290)
T ss_pred CEEEEeeeeeEEEeeecCCCCCCcceEeeeeeEecCCCHHHHHHHHHHcCCceEEEEeecCCHHHHHHHHHHHHcCCcee
Confidence 48999999999999999999999988888888999999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCC--
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG-- 226 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g-- 226 (287)
++.+.+ +..++.++++++++|+|+++.+.++...+..+++.. ..+++++++++++..+. ...++++.+++.+
T Consensus 81 ~~~~~~--~~~~~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~ 154 (290)
T cd01939 81 HCYRKD--IDEPASSYIIRSRAGGRTTIVNDNNLPEVTYDDFSK---IDLTQYGWIHFEGRNPD-ETLRMMQHIEEHNNR 154 (290)
T ss_pred eeeEcC--CCCCeeEEEEEcCCCCeEEEEeCCCCCCCCHHHHhh---hhhccCCEEEEeccCHH-HHHHHHHHHHHhcCc
Confidence 987665 546667888888889999888887655444343432 23578999999987764 3567778887766
Q ss_pred -----CcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHH
Q 023130 227 -----VPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQIS 273 (287)
Q Consensus 227 -----~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~ 273 (287)
+++++|++... +.+..+++++|++++|++|++.+ |. .+.+++.
T Consensus 155 ~~~~~~~v~~d~~~~~-~~~~~~l~~~di~~~n~~~~~~~-~~--~~~~~~~ 202 (290)
T cd01939 155 RPEIRITISVEVEKPR-EELLELAAYCDVVFVSKDWAQSR-GY--KSPEECL 202 (290)
T ss_pred CCCcceEEEEEeccCc-hhhhhHHhhCCEEEEEhHHHHhc-Cc--CCHHHHH
Confidence 68889987543 33558999999999999998865 63 3455544
No 21
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.95 E-value=4.5e-28 Score=214.99 Aligned_cols=208 Identities=32% Similarity=0.474 Sum_probs=175.7
Q ss_pred CCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCC
Q 023130 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (287)
Q Consensus 67 ~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd 146 (287)
|.+|+|+|++++|++..++.+ .++..+......++||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++.||+
T Consensus 1 m~~v~~iG~~~iD~~~~~~~~--~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~v~~i~~vG~D~~g~~i~~~l~~~gv~ 78 (301)
T PF00294_consen 1 MKKVLVIGEVNIDIIGYVDRF--KGDLVRVSSVKRSPGGAGANVAIALARLGADVALIGKVGDDFFGEIILEELKERGVD 78 (301)
T ss_dssp EEEEEEESEEEEEEEEESSSH--TTSEEEESEEEEEEESHHHHHHHHHHHTTSEEEEEEEEESSHHHHHHHHHHHHTTEE
T ss_pred CCcEEEECccceEEEeecCCc--CCcceecceEEEecCcHHHHHHHHHHhccCcceEEeeccCcchhhhhhhcccccccc
Confidence 457999999999999999887 555559999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeC-----CCCHHHHHHHHHH
Q 023130 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQR-----EIPDSVNIQVAKA 221 (287)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g-----~~~~~~~~~~~~~ 221 (287)
++++.+.+ +.+|+.++++++++|+|++..+.++......+.+ ..+.+..++++++++ ..+.+....+.+.
T Consensus 79 ~~~i~~~~--~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (301)
T PF00294_consen 79 TSYIPRDG--DEPTGRCLIIVDPDGERTFVFSPGANSDLTPDEL---DEEAIDEADILHLSGVSLPEGIPEDLLEALAKA 153 (301)
T ss_dssp ETTEEEES--SSEEEEEEEEEETTSEEEEEEEEGGGGGGGHHHH---HHHHHHTESEEEEESGHCSTTSHHHHHHHHHHH
T ss_pred cccccccc--ccccceeEeeecccccceeeeccccccccccccc---cccccccccceeecccccccccccceeeecccc
Confidence 99999887 7799999999999999999998886655443333 346788999999999 5556777778888
Q ss_pred HHhCC--CcEEEeCCCC-CCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 222 ARSAG--VPVIFDAGGM-DAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 222 a~~~g--~~v~~D~~~~-~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+++.+ .+++.++.+. ..+...++++++|++++|++|++.+++....+.+++.++++++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 216 (301)
T PF00294_consen 154 AKKNGPFDPVFRDPSWDDLREDLKELLPYADILKPNEEEAEALTGSKIDDPEDALAALRELQA 216 (301)
T ss_dssp HHHTTEEEEEEEGGGSHHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhhhhccccchhccccccccccccccccchhhhhccccccch
Confidence 88877 4555566542 124567778999999999999999999876689999999888654
No 22
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.95 E-value=8.8e-27 Score=205.71 Aligned_cols=205 Identities=24% Similarity=0.342 Sum_probs=161.4
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
.|+++|++++|+++.+++.|.+++.... .....+||+++|+|+++++||.++.++|.+|+|.+|+.+++.|++.||+++
T Consensus 1 ~v~~~G~~~~D~~~~~~~~~~~~~~~~~-~~~~~~GG~~~Nva~~l~~lG~~~~~~~~lG~D~~g~~i~~~L~~~gI~~~ 79 (288)
T cd01941 1 EIVVIGAANIDLRGKVSGSLVPGTSNPG-HVKQSPGGVGRNIAENLARLGVSVALLSAVGDDSEGESILEESEKAGLNVR 79 (288)
T ss_pred CeEEEEeEEEeeeecccCccccCCCCCe-eEEEccCcHHHHHHHHHHHhCCCcEEEEEEecCccHHHHHHHHHHcCCccc
Confidence 3899999999999999998877766543 467899999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEE-eCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCC
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIII-VGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGV 227 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~-~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~ 227 (287)
++. .+ +.+|+.++++++.+|+|++.. ..+....+..+.+ +...+.+.+++++++++..+++.+..+++.+++.+.
T Consensus 80 ~~~-~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~a~~~~~ 155 (288)
T cd01941 80 GIV-FE--GRSTASYTAILDKDGDLVVALADMDIYELLTPDFL-RKIREALKEAKPIVVDANLPEEALEYLLALAAKHGV 155 (288)
T ss_pred eee-eC--CCCcceEEEEECCCCCEEEEEechHhhhhCCHHHH-HHHHHHHhcCCEEEEeCCCCHHHHHHHHHhhhhcCC
Confidence 887 55 669999999999899998732 2222222211111 123456889999999988888888899999999999
Q ss_pred cEEEeCCCCCCCCch--hhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHH
Q 023130 228 PVIFDAGGMDAPIPQ--ELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKC 279 (287)
Q Consensus 228 ~v~~D~~~~~~~~~~--~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l 279 (287)
++++|++... .+.+ ++++++|++++|++|++.++|....+.++..++++.+
T Consensus 156 ~v~~d~~~~~-~~~~~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~~~~~~~~~ 208 (288)
T cd01941 156 PVAFEPTSAP-KLKKLFYLLHAIDLLTPNRAELEALAGALIENNEDENKAAKIL 208 (288)
T ss_pred cEEEEccchH-HhccchhhcccceEEeCCHHHHHHHhCcccCCchhHHHHHHHH
Confidence 9999987532 1111 5889999999999999999997543333333333433
No 23
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.95 E-value=1.2e-26 Score=211.39 Aligned_cols=210 Identities=22% Similarity=0.230 Sum_probs=163.3
Q ss_pred CCCCCCEEEEC-CceeeeEeecCC-------CCCCCcEEEe----------------------cCceeecCchHHHHHHH
Q 023130 64 INTPPPLVVVG-SANFDIYVEIDR-------LPKVGETVAA----------------------KTSQTLAGGKGANQAAC 113 (287)
Q Consensus 64 ~~~~~~IlviG-~~~iD~~~~vd~-------~P~~~~~~~~----------------------~~~~~~~GG~a~N~A~~ 113 (287)
..++++|+++| ++.+|+.+.++. +++.+.+... .....++||+++|++++
T Consensus 16 ~~~~~~v~g~g~nalvD~~~~v~~~~l~~~~~~kg~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GGsa~N~a~~ 95 (367)
T PLN02379 16 GPRPPLVLGLQPVALVDHVARVDWSLLDQIPGDRGGSIRVTIEELEHILREVNAHILPSPDDLSPIKTMAGGSVANTIRG 95 (367)
T ss_pred CCCCCcEEEEccccEEEEEEecCHHHHHHcCCCCcceeecCHHHHHHHHHHhhhcccccccccccceecCCCHHHHHHHH
Confidence 34567899999 999999998764 3333321111 12567799999999999
Q ss_pred HHH-cCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCc
Q 023130 114 GAK-LSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD 192 (287)
Q Consensus 114 la~-LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~ 192 (287)
+++ ||.++.++|+||+|.+|+++++.|++.||+++++++.+ .+|+.|+++++++|+|++..+.++...+.++++..
T Consensus 96 la~~LG~~~~~ig~VG~D~~G~~~~~~L~~~GI~~~~~~~~~---~~Tg~~~v~v~~dgert~~~~lg~~~~l~~~~~~~ 172 (367)
T PLN02379 96 LSAGFGVSTGIIGACGDDEQGKLFVSNMGFSGVDLSRLRAKK---GPTAQCVCLVDALGNRTMRPCLSSAVKLQADELTK 172 (367)
T ss_pred HHHhcCCCEEEEEEeCCChhHHHHHHHHHHcCCCccCcccCC---CCCceEEEEECCCCCccccCCccccccCChhHCCH
Confidence 986 99999999999999999999999999999998886544 48999999999999999877777665555555543
Q ss_pred hhHhhhccccEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEeCCCC-----CCCCchhhc--cCCcEEecCHHHHHhhcCC
Q 023130 193 EDLEVVKKAGIVLLQR-EIPDSVNIQVAKAARSAGVPVIFDAGGM-----DAPIPQELL--NFIDILSPNESELGRLTGM 264 (287)
Q Consensus 193 ~~~~~l~~a~~v~~~g-~~~~~~~~~~~~~a~~~g~~v~~D~~~~-----~~~~~~~ll--~~~dil~~Ne~E~~~l~g~ 264 (287)
+.++++++++++. ..+.+.+.++++.|+++|++|++|++.. .++.+.+++ .++|++++|++|++.+++.
T Consensus 173 ---~~~~~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~ 249 (367)
T PLN02379 173 ---EDFKGSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELLRG 249 (367)
T ss_pred ---HHHhcCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcC
Confidence 5678999999983 2456789999999999999999999753 123344555 4899999999999999974
Q ss_pred C-CCCHHHHHHHHHHH
Q 023130 265 P-TDSYEQISEAVVKC 279 (287)
Q Consensus 265 ~-~~~~~~~~~~~~~l 279 (287)
. .++.+++.+..++.
T Consensus 250 ~~~~~~~~~~~~l~~~ 265 (367)
T PLN02379 250 EQESDPEAALEFLAKY 265 (367)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 2 24555555554443
No 24
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.95 E-value=1.9e-26 Score=204.24 Aligned_cols=205 Identities=26% Similarity=0.321 Sum_probs=160.4
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
||+|+|++++|++...++. .......+||+++|+|.++++||.++.++|.+|+|.+|+.+++.|++.||++.
T Consensus 1 ~ilviG~~~~D~~~~~~~~--------~~~~~~~~GG~~~n~a~~l~~lg~~v~~i~~vG~D~~g~~i~~~l~~~gi~~~ 72 (295)
T cd01167 1 KVVCFGEALIDFIPEGSGA--------PETFTKAPGGAPANVAVALARLGGKAAFIGKVGDDEFGDFLLETLKEAGVDTR 72 (295)
T ss_pred CEEEEcceeEEEecCCCCC--------CccccccCCCcHHHHHHHHHhcCCCeEEEEeecCcHHHHHHHHHHHHcCCCch
Confidence 6899999999999765543 45567889999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCC-----CHHHHHHHHHHHH
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQVAKAAR 223 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~-----~~~~~~~~~~~a~ 223 (287)
++.+.+ +.+|+.++++++++|+|++.++.++........- ...+.+++++++++.+.. ..+.+.++++.++
T Consensus 73 ~~~~~~--~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 148 (295)
T cd01167 73 GIQFDP--AAPTTLAFVTLDADGERSFEFYRGPAADLLLDTE--LNPDLLSEADILHFGSIALASEPSRSALLELLEAAK 148 (295)
T ss_pred heeecC--CCCceEEEEEECCCCCEeEEeecCCcHhhhcCcc--CChhHhccCCEEEEechhhccchHHHHHHHHHHHHH
Confidence 998777 6799999999988899999888776533211110 123567889999997531 1356788999999
Q ss_pred hCCCcEEEeCCCCCC---------CCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhhhcccCC
Q 023130 224 SAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT 287 (287)
Q Consensus 224 ~~g~~v~~D~~~~~~---------~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~~v~v~t 287 (287)
+.|+++++|++.... ..+.++++++|++++|++|++.++|. ...++..+...+...+.+|.|
T Consensus 149 ~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~--~~~~~~~~~l~~~g~~~vvvt 219 (295)
T cd01167 149 KAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGE--EDPEEIAALLLLFGLKLVLVT 219 (295)
T ss_pred HcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCC--CCHHHHHHHHhhcCCCEEEEe
Confidence 999999999985321 12457889999999999999999995 345555544444444444443
No 25
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=5.7e-27 Score=203.94 Aligned_cols=198 Identities=33% Similarity=0.464 Sum_probs=159.9
Q ss_pred CCCCCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhC
Q 023130 64 INTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGC 143 (287)
Q Consensus 64 ~~~~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~ 143 (287)
...++.|+|+|+.++|++..++.+|.++++.....+...+||+++|+|++++|||.++.|||+||+|.+|+.+.+.|++.
T Consensus 6 ~~~~~~vv~fGs~~~D~V~~~~~~p~~ge~~~~~~f~~~~GG~~aN~AvaaarLG~~~afiGkvGdD~fG~~l~~~L~~~ 85 (330)
T KOG2855|consen 6 YGEPPLVVVFGSMLIDFVPSTRRLPNAGETWEPPGFKTAPGGKGANQAVAAARLGGRVAFIGKVGDDEFGDDLLDILKQN 85 (330)
T ss_pred ccCCceEEEeccceeeeeeccccCCCccccccCCcceecCCCcchhhhhHHHhcCcceeeeecccchhhHHHHHHHHhhC
Confidence 44667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHH--
Q 023130 144 GVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKA-- 221 (287)
Q Consensus 144 gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~-- 221 (287)
||+++++..++ +.+|+.+.+.+..+|++.+.++.+++...+++. .+...+.++.+++++++++.+.+...+.++.
T Consensus 86 ~V~~~~v~~~~--~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~-se~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~ 162 (330)
T KOG2855|consen 86 GVDTSGVKFDE--NARTACATITVSKDGENRIIFVRGANADMLPED-SELNLEVIKEAKVFHCQSEILIEEPMRSLHIAA 162 (330)
T ss_pred CcccccceecC--CCceEEEEEEEccCCceEEEEEecCchhcCccc-ccccHHHHhhccEEEEeeecCCcchhHHHHHhh
Confidence 99999999999 999999999999999999999999998876654 3445588999999999988765444444444
Q ss_pred ---HHhCCCcEEEeCCCCCCCC---------chhhccCCcEEecCHHHHHhhcCC
Q 023130 222 ---ARSAGVPVIFDAGGMDAPI---------PQELLNFIDILSPNESELGRLTGM 264 (287)
Q Consensus 222 ---a~~~g~~v~~D~~~~~~~~---------~~~ll~~~dil~~Ne~E~~~l~g~ 264 (287)
+++.|--+.+||+.+..-| ...++..+|++...++|++.++|.
T Consensus 163 ~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~ 217 (330)
T KOG2855|consen 163 VKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGI 217 (330)
T ss_pred hhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccC
Confidence 4444444555555332111 223445566666666666666654
No 26
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.94 E-value=6.7e-26 Score=201.65 Aligned_cols=200 Identities=24% Similarity=0.326 Sum_probs=162.2
Q ss_pred EECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceE
Q 023130 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMN 151 (287)
Q Consensus 72 viG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~ 151 (287)
|.=++++|+++.++++| +++.+...+...++||+++|+|+++++||.++.++|.||+| +|+.+++.|++.|||++++.
T Consensus 4 ~~~~~~~D~~~~~~~~~-~g~~~~~~~~~~~~GG~~~NvA~~la~lG~~v~~is~vG~D-~g~~~~~~L~~~gId~~~~~ 81 (304)
T TIGR03828 4 VTLNPAIDLTIELDGLT-LGEVNRVESTRIDAGGKGINVSRVLKNLGVDVVALGFLGGF-TGDFIEALLREEGIKTDFVR 81 (304)
T ss_pred EEcchHHeEEEEccccc-cCceeecccccccCCccHHHHHHHHHHcCCCeEEEEEecCc-hhHHHHHHHHHCCCcceEEE
Confidence 44589999999999999 99999999999999999999999999999999999999999 69999999999999999888
Q ss_pred EccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCc---hhHhhhccccEEEEeCCC----CHHHHHHHHHHHHh
Q 023130 152 VVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD---EDLEVVKKAGIVLLQREI----PDSVNIQVAKAARS 224 (287)
Q Consensus 152 ~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~---~~~~~l~~a~~v~~~g~~----~~~~~~~~~~~a~~ 224 (287)
+.+ .|+.++++++++|+++++.+.++. +++.++.. ...+.+++++++++++.. +.+.+..+++.+++
T Consensus 82 ~~~----~t~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~ 155 (304)
T TIGR03828 82 VPG----ETRINVKIKEPSGTETKLNGPGPE--ISEEELEALLEKLRAQLAEGDWLVLSGSLPPGVPPDFYAELIALARE 155 (304)
T ss_pred CCC----CCeeeEEEEeCCCCEEEEECCCCC--CCHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 754 588889999888988877666543 22222211 112357899999998753 45778899999999
Q ss_pred CCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 225 AGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 225 ~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
++.++++|++.. .+.+.+...+|++++|++|++.|+|.+..+.+++.++++++.+
T Consensus 156 ~~~~v~~D~~~~--~~~~~~~~~~~i~~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~ 210 (304)
T TIGR03828 156 KGAKVILDTSGE--ALRDGLKAKPFLIKPNDEELEELFGRELKTLEEIIEAARELLD 210 (304)
T ss_pred cCCEEEEECChH--HHHHHHhcCCcEECcCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 999999999853 2223334568999999999999999766667777777776653
No 27
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.94 E-value=1.5e-25 Score=195.69 Aligned_cols=180 Identities=22% Similarity=0.317 Sum_probs=151.0
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+|+|++++|+++.++++|.+++..+..+....+||++.|+|.++++||.++.++|.+|+|.+|+.+++.|++ ++++.
T Consensus 1 ~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~~~~i~~vG~D~~g~~i~~~l~~-~~~~~ 79 (265)
T cd01947 1 KIAVVGHVEWDIFLSLDAPPQPGGISHSSDSRESPGGGGANVAVQLAKLGNDVRFFSNLGRDEIGIQSLEELES-GGDKH 79 (265)
T ss_pred CEEEEeeeeEEEEEEecCCCCCCceeecccceeecCchHHHHHHHHHHcCCceEEEEEecCChHHHHHHHHHHh-cCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999 99998
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCc
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~ 228 (287)
++...+ ..|+.++++++++|+|+++.+.+.. .+++. ++.+.+++++++++..+ ..++++.+++.+ .
T Consensus 80 ~~~~~~---~~t~~~~~~~~~~g~r~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~-~ 145 (265)
T cd01947 80 TVAWRD---KPTRKTLSFIDPNGERTITVPGERL----EDDLK---WPILDEGDGVFITAAAV---DKEAIRKCRETK-L 145 (265)
T ss_pred eEEecC---CCCceEEEEECCCCcceEEecCCCC----cccCC---HhHhccCCEEEEecccc---cHHHHHHHHHhC-C
Confidence 877654 4899999999999999887654432 12222 24578899999988653 346677777765 5
Q ss_pred EEEeCCCCCC-CCchhhccCCcEEecCHHHHHhhcC
Q 023130 229 VIFDAGGMDA-PIPQELLNFIDILSPNESELGRLTG 263 (287)
Q Consensus 229 v~~D~~~~~~-~~~~~ll~~~dil~~Ne~E~~~l~g 263 (287)
+++|++.... ..+.++++++|++++|++|+..+++
T Consensus 146 ~~~d~~~~~~~~~~~~~~~~~d~~~~n~~e~~~l~~ 181 (265)
T cd01947 146 VILQVTPRVRVDELNQALIPLDILIGSRLDPGELVV 181 (265)
T ss_pred eEeccCccccchhHHHHhhhCCEEEeCHHHHHHhhh
Confidence 7889876532 2356788999999999999998875
No 28
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.94 E-value=1.2e-25 Score=198.82 Aligned_cols=200 Identities=27% Similarity=0.351 Sum_probs=162.5
Q ss_pred EEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCce
Q 023130 71 VVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYM 150 (287)
Q Consensus 71 lviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v 150 (287)
.++|++++|+++.++++| .++..+..+....+||+++|+|.++++||.++.++|.+|+| +|+++++.|++.||++.++
T Consensus 4 ~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~v~~is~vG~D-~g~~i~~~l~~~gi~~~~~ 81 (289)
T cd01164 4 TVTLNPAIDLTIELDQLQ-PGEVNRVSSTRKDAGGKGINVARVLKDLGVEVTALGFLGGF-TGDFFEALLKEEGIPDDFV 81 (289)
T ss_pred EEecChHHeEEEEcCccc-CCceeecccccccCCcchhHHHHHHHHcCCCeEEEEEccCc-hhHHHHHHHHHcCCCceEE
Confidence 578999999999999997 57889999999999999999999999999999999999999 8999999999999999988
Q ss_pred EEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccC---chhHhhhccccEEEEeCCCCH----HHHHHHHHHHH
Q 023130 151 NVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG---DEDLEVVKKAGIVLLQREIPD----SVNIQVAKAAR 223 (287)
Q Consensus 151 ~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~---~~~~~~l~~a~~v~~~g~~~~----~~~~~~~~~a~ 223 (287)
.... +|+.++++++.+|+++.+...++. ++++++. +...+.+++++++++++..+. +....+++.++
T Consensus 82 ~~~~----~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 155 (289)
T cd01164 82 EVAG----ETRINVKIKEEDGTETEINEPGPE--ISEEELEALLEKLKALLKKGDIVVLSGSLPPGVPADFYAELVRLAR 155 (289)
T ss_pred ECCC----CCEEEEEEEeCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHhcCCCCEEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 7654 688888888877877776555433 2222221 111234678999999987764 67888999999
Q ss_pred hCCCcEEEeCCCCCCCCchhhc-cCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 224 SAGVPVIFDAGGMDAPIPQELL-NFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 224 ~~g~~v~~D~~~~~~~~~~~ll-~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+.++++++|++.. . ..+++ +++|++++|++|++.++|....+.+++.++++.+.+
T Consensus 156 ~~~~~i~~D~~~~--~-~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 211 (289)
T cd01164 156 EKGARVILDTSGE--A-LLAALAAKPFLIKPNREELEELFGRPLGDEEDVIAAARKLIE 211 (289)
T ss_pred HcCCeEEEECChH--H-HHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 9999999999753 2 23344 799999999999999999766666777777776654
No 29
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.94 E-value=2.6e-25 Score=198.04 Aligned_cols=191 Identities=25% Similarity=0.330 Sum_probs=149.3
Q ss_pred CCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCC
Q 023130 67 PPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (287)
Q Consensus 67 ~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd 146 (287)
+++|+++|++++|++ |..+ ......+||+++|+|+++++||.++.++|.+|+|.+|+++++.|++.||+
T Consensus 2 ~~~il~iG~~~iD~~------~~~~-----~~~~~~~GG~~~N~a~~l~~LG~~~~~v~~vG~D~~g~~i~~~l~~~gI~ 70 (304)
T PRK09434 2 MNKVWVLGDAVVDLI------PEGE-----NRYLKCPGGAPANVAVGIARLGGESGFIGRVGDDPFGRFMQQTLQDEGVD 70 (304)
T ss_pred CCcEEEecchheeee------cCCC-----CceeeCCCChHHHHHHHHHHcCCCceEEEEecCchHHHHHHHHHHHcCCC
Confidence 458999999999998 3322 23456899999999999999999999999999999999999999999999
Q ss_pred CCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCC--CCCCCCcccCchhHhhhccccEEEEeCCC-----CHHHHHHHH
Q 023130 147 LDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT--NMSCWPEKFGDEDLEVVKKAGIVLLQREI-----PDSVNIQVA 219 (287)
Q Consensus 147 ~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga--~~~~~~~~l~~~~~~~l~~a~~v~~~g~~-----~~~~~~~~~ 219 (287)
++++.+.+ +.+|+.+++.++++|+|++.+.... ...+..+ ..+.+.+++++++++.. +.+...+++
T Consensus 71 ~~~~~~~~--~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (304)
T PRK09434 71 TTYLRLDP--AHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQ-----DLPPFRQGEWLHLCSIALSAEPSRSTTFEAM 143 (304)
T ss_pred CcceEEcC--CCCceEEEEEECCCCCEeEEEecCCchhhhCCHH-----HhhhhcCCCEEEEccccccCchHHHHHHHHH
Confidence 99998887 7799999999988899987654432 2222222 22346778999987632 134567889
Q ss_pred HHHHhCCCcEEEeCCCCCC---------CCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHH
Q 023130 220 KAARSAGVPVIFDAGGMDA---------PIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVV 277 (287)
Q Consensus 220 ~~a~~~g~~v~~D~~~~~~---------~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~ 277 (287)
+.++++|.++++|++.... +.++++++++|++++|++|++.++|. .+.+++.+...
T Consensus 144 ~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~--~~~~~~~~~l~ 208 (304)
T PRK09434 144 RRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGT--SQLEDAIYALA 208 (304)
T ss_pred HHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCC--CCHHHHHHHHH
Confidence 9999999999999985421 12346788999999999999999995 34555544443
No 30
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.94 E-value=1.2e-24 Score=193.52 Aligned_cols=203 Identities=25% Similarity=0.323 Sum_probs=155.0
Q ss_pred CEEEECCceeeeEeec--CCCCCCCc--EEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCC
Q 023130 69 PLVVVGSANFDIYVEI--DRLPKVGE--TVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (287)
Q Consensus 69 ~IlviG~~~iD~~~~v--d~~P~~~~--~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~g 144 (287)
+|+|+|+.++|+++.+ +++|.... ..........+|| ++|+|.++++||.++.++|.+|+|.+|+++++.|++.|
T Consensus 1 ~vl~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-~~NvA~~la~LG~~~~~i~~vG~D~~g~~i~~~l~~~g 79 (304)
T cd01172 1 KVLVVGDVILDEYLYGDVERISPEAPVPVVKVEREEIRLGG-AANVANNLASLGAKVTLLGVVGDDEAGDLLRKLLEKEG 79 (304)
T ss_pred CEEEEcceeEEeeEeeccccccCCCCcceEEeeeEEecCcH-HHHHHHHHHHhCCCeEEEEEEcCCccHHHHHHHHHhCC
Confidence 5899999999999874 56644332 2344556778999 69999999999999999999999999999999999999
Q ss_pred CCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcc---cCchhHhhhccccEEEEeCC----CCHHHHHH
Q 023130 145 VRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK---FGDEDLEVVKKAGIVLLQRE----IPDSVNIQ 217 (287)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~---l~~~~~~~l~~a~~v~~~g~----~~~~~~~~ 217 (287)
|+++++ ..+ +.+|+.+++++++ +++.+..+.+......... +.....+.+++++++++++. ++.+.+.+
T Consensus 80 I~~~~~-~~~--~~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~s~~~~~~~~~~~~~~ 155 (304)
T cd01172 80 IDTDGI-VDE--GRPTTTKTRVIAR-NQQLLRVDREDDSPLSAEEEQRLIERIAERLPEADVVILSDYGKGVLTPRVIEA 155 (304)
T ss_pred CCcceE-ecC--CCCceEEEEEecC-CcEEEEEecCCCCCCCHHHHHHHHHHHHHhhccCCEEEEEcCCCCccCHHHHHH
Confidence 999985 455 6689999888875 4666655544333322211 11223345789999999753 45677889
Q ss_pred HHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 023130 218 VAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280 (287)
Q Consensus 218 ~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~ 280 (287)
+++.++++|+++++|++.... ..++++|++++|++|++.+++....+.+++.+.++++.
T Consensus 156 ~~~~a~~~~~~v~~D~~~~~~----~~~~~~d~l~~n~~E~~~l~~~~~~~~~~~~~~~~~l~ 214 (304)
T cd01172 156 LIAAARELGIPVLVDPKGRDY----SKYRGATLLTPNEKEAREALGDEINDDDELEAAGEKLL 214 (304)
T ss_pred HHHHHHhcCCCEEEeCCCcch----hhccCCcEeCCCHHHHHHHhCCCCCChHHHHHHHHHHH
Confidence 999999999999999987532 57789999999999999999975555566666665543
No 31
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.94 E-value=5.9e-25 Score=196.67 Aligned_cols=207 Identities=25% Similarity=0.295 Sum_probs=156.5
Q ss_pred CCCCCEEEECCceeeeEee--cCCC-C-CCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHH
Q 023130 65 NTPPPLVVVGSANFDIYVE--IDRL-P-KVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDAL 140 (287)
Q Consensus 65 ~~~~~IlviG~~~iD~~~~--vd~~-P-~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L 140 (287)
.+.++|+++|+.++|+++. ++++ | .++...........+|| ++|+|.++++||.++.++|.||+|.+|+++++.|
T Consensus 5 ~~~~~il~iG~~~iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~l~~lg~~v~~i~~vG~D~~g~~i~~~l 83 (315)
T TIGR02198 5 FKGAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEREEDRLGG-AANVARNIASLGARVFLVGVVGDDEAGKRLEALL 83 (315)
T ss_pred hCCCcEEEECceeEeeeeeecccccCCCCCCceEEEEEEEecCcH-HHHHHHHHHhcCCceEEEEEEecchhHHHHHHHH
Confidence 3467899999999999987 5554 2 23334455666788999 7999999999999999999999999999999999
Q ss_pred HhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEe-CCCCCCCCCc---ccCchhHhhhccccEEEEeCC----CCH
Q 023130 141 SGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIV-GGTNMSCWPE---KFGDEDLEVVKKAGIVLLQRE----IPD 212 (287)
Q Consensus 141 ~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~-~ga~~~~~~~---~l~~~~~~~l~~a~~v~~~g~----~~~ 212 (287)
++.||+++++.+.+ +.+|+.+++++++++ .++.. ......++.. .+.+...+.+++++++++++. ++.
T Consensus 84 ~~~gI~~~~~~~~~--~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~ 159 (315)
T TIGR02198 84 AEEGIDTSGLIRDK--DRPTTTKTRVLARNQ--QLLRVDFEERDPINAELEARLLAAIREQLASADAVVLSDYAKGVLTP 159 (315)
T ss_pred HHCCCCcceEEECC--CCCcceEEEEEcCCe--EEEEecCCCCCCCCHHHHHHHHHHHHhhhhhCCEEEEecCCCCccCH
Confidence 99999999998887 779999999997642 22222 2211112211 111122345789999999753 457
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+.+..+++.++++|++|++|+++.. ...++++|++++|++|++.|++. ..+.++..++++++.+
T Consensus 160 ~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~~d~l~~n~~E~~~l~~~-~~~~~~~~~~~~~l~~ 223 (315)
T TIGR02198 160 RVVQEVIAAARKHGKPVLVDPKGKD----FSRYRGATLITPNRKEAEAAVGA-CDTEAELVQAAEKLLE 223 (315)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCcc----hhhcCCCcEECCCHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 7788999999999999999998652 23578999999999999999993 3455666666666543
No 32
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.93 E-value=1.5e-24 Score=193.67 Aligned_cols=201 Identities=22% Similarity=0.359 Sum_probs=156.1
Q ss_pred EEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCc
Q 023130 70 LVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDY 149 (287)
Q Consensus 70 IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~ 149 (287)
+.+..++++|+++.++++|.. ....+......+||++.|+|+++++||.++.++|.+|+ .+|+++++.|++ ||++++
T Consensus 3 ~~~t~np~~D~~~~~~~~~~~-~~~~~~~~~~~~GG~~~NvA~~la~LG~~~~~~~~vGd-~~G~~i~~~l~~-gI~~~~ 79 (309)
T PRK13508 3 LTVTLNPSIDISYPLDELKLD-TVNRVVDVSKTAGGKGLNVTRVLSEFGENVLATGLIGG-ELGQFIAEHLDD-QIKHAF 79 (309)
T ss_pred EEEecChHHeEEEEeCCeeeC-CeEEecceeecCCchHHHHHHHHHHcCCCeEEEEEecC-hhHHHHHHHHHc-CCCceE
Confidence 456789999999999999655 46677788999999999999999999999999999996 689999999999 999987
Q ss_pred eEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcc---cCchhHhhhccccEEEEeCCCC----HHHHHHHHHHH
Q 023130 150 MNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEK---FGDEDLEVVKKAGIVLLQREIP----DSVNIQVAKAA 222 (287)
Q Consensus 150 v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~---l~~~~~~~l~~a~~v~~~g~~~----~~~~~~~~~~a 222 (287)
++. + + .|+.++++++ +|+|+++.++++... .++ +.....+.+.+++++++++..+ .+.+.++++.+
T Consensus 80 ~~~-~--~-~t~~~~~~~~-~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a 152 (309)
T PRK13508 80 YKI-K--G-ETRNCIAILH-EGQQTEILEKGPEIS--VQEADGFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELA 152 (309)
T ss_pred EEC-C--C-CCeeeEEEEe-CCCEEEEECCCCCCC--HHHHHHHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHH
Confidence 654 3 3 6888888886 789988877765422 211 1112234578999999998654 35678899999
Q ss_pred HhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCC-CCHHHHHHHHHHHh
Q 023130 223 RSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPT-DSYEQISEAVVKCH 280 (287)
Q Consensus 223 ~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~-~~~~~~~~~~~~l~ 280 (287)
+++|+++++|++..........+.++|++++|++|++.++|.+. .+.+++.++++++.
T Consensus 153 ~~~g~~v~~D~~~~~~~~~~~~~~~~dii~~n~~E~~~l~g~~~~~~~~~~~~~~~~~~ 211 (309)
T PRK13508 153 NQAGKPVVLDCSGAALQAVLESPYKPTVIKPNIEELSQLLGKEVSEDLDELKEVLQQPL 211 (309)
T ss_pred HHCCCEEEEECCcHHHHHHHhccCCceEEccCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 99999999999854211122235689999999999999999654 35566666666543
No 33
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.93 E-value=2.1e-24 Score=193.01 Aligned_cols=202 Identities=21% Similarity=0.251 Sum_probs=161.4
Q ss_pred EE-EECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 70 LV-VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 70 Il-viG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
|+ |.=++++|+++.++++| .++..++.....++||+++|+|+++++||.++.++|.+|+|.+|++ ++.|++.||++.
T Consensus 5 ~~~~~~~p~~D~~~~~~~~~-~~~~~~~~~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~~~~-~~~l~~~gv~~~ 82 (312)
T PRK09513 5 VATITLNPAYDLVGFCPEIE-RGEVNLVKTTGLHAAGKGINVAKVLKDLGIDVTVGGFLGKDNQDGF-QQLFSELGIANR 82 (312)
T ss_pred EEEEecChHHeEEEEcCcee-cCCeeeecceeecCCchHHHHHHHHHHcCCCeEEEEEecCccHHHH-HHHHHHcCCCcc
Confidence 55 55699999999999998 6889999999999999999999999999999999999999999986 689999999987
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccC---chhHhhhccccEEEEeCCCC----HHHHHHHHHH
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG---DEDLEVVKKAGIVLLQREIP----DSVNIQVAKA 221 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~---~~~~~~l~~a~~v~~~g~~~----~~~~~~~~~~ 221 (287)
++ +.+ + +|+.++.+++++|+++++.+.+.. +.+.++. ....+.++++++++++|..+ .+.+.++++.
T Consensus 83 ~~-~~~--~-~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~d~v~~~g~~~~~~~~~~~~~~~~~ 156 (312)
T PRK09513 83 FQ-VVQ--G-RTRINVKLTEKDGEVTDFNFSGFE--VTPADWERFVTDSLSWLGQFDMVAVSGSLPRGVSPEAFTDWMTR 156 (312)
T ss_pred EE-ECC--C-CCEEEEEEEeCCCcEEEEeCCCCC--CCHHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCHHHHHHHHHH
Confidence 65 444 4 799999999888999877666532 2222221 11234578999999998655 3667888999
Q ss_pred HHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 222 ARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 222 a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+++.|.++++|++.. .+.+.+....|++++|++|+..++|.+..+.+++.++++.+.+
T Consensus 157 a~~~g~~v~~D~~~~--~~~~~~~~~~~~l~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~ 214 (312)
T PRK09513 157 LRSQCPCIIFDSSRE--ALVAGLKAAPWLVKPNRRELEIWAGRKLPELKDVIEAAHALRE 214 (312)
T ss_pred HHhcCCEEEEECChH--HHHHHhccCCeEEcCCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 999999999999853 2334455678999999999999999766666777666666643
No 34
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.93 E-value=1.7e-24 Score=193.26 Aligned_cols=202 Identities=21% Similarity=0.330 Sum_probs=158.2
Q ss_pred EEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCce
Q 023130 71 VVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYM 150 (287)
Q Consensus 71 lviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v 150 (287)
.|.=++.+|..+.++++|..+ ..+..+...++||+++|+|+++++||.++.++|.+|+| +|+++++.|++.||+++++
T Consensus 3 ~~~~~p~~d~~~~~~~~~~~~-~~~~~~~~~~~GG~~~NvA~~la~LG~~v~~i~~vG~~-~G~~i~~~l~~~GV~~~~~ 80 (309)
T TIGR01231 3 TVTLNPSVDISYPLTALKLDT-VNRVQEVSKTAGGKGLNVTRVLAQVGDPVLASGFLGGK-LGEFIEKELDHSDIKHAFY 80 (309)
T ss_pred EEEcchHHeEEEEcCCeeeCc-eEeeceeeecCCccHHHHHHHHHHcCCCeEEEEEecCh-hHHHHHHHHHHcCCceeEE
Confidence 455689999999999987666 66888899999999999999999999999999999975 9999999999999999988
Q ss_pred EEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCC-cccCchhHhhhccccEEEEeCCC----CHHHHHHHHHHHHhC
Q 023130 151 NVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWP-EKFGDEDLEVVKKAGIVLLQREI----PDSVNIQVAKAARSA 225 (287)
Q Consensus 151 ~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~-~~l~~~~~~~l~~a~~v~~~g~~----~~~~~~~~~~~a~~~ 225 (287)
...+ .|+.++.++. +|+|+++.++++...... .++.....+.+.+++++++++.. +...+.++++.++++
T Consensus 81 ~~~~----~t~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~ 155 (309)
T TIGR01231 81 KISG----ETRNCIAILH-EGQQTEILEQGPEISNQEAAGFLKHFEQLLEKVEVVAISGSLPKGLPQDYYAQIIERCQNK 155 (309)
T ss_pred ECCC----CCEEeEEEEe-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhccCCEEEEECCCCCCcCHHHHHHHHHHHHhC
Confidence 7643 6878888774 789998887776422110 11111223457889999999864 356788999999999
Q ss_pred CCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCC-CCHHHHHHHHHHH
Q 023130 226 GVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPT-DSYEQISEAVVKC 279 (287)
Q Consensus 226 g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~-~~~~~~~~~~~~l 279 (287)
|+++++|+++.........+.++|++++|++|++.++|.+. .+.+++.++++++
T Consensus 156 g~~v~~D~~~~~~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~~~ 210 (309)
T TIGR01231 156 GVPVVLDCSGATLQTVLENPAKPTVIKPNIEELSQLLNQELTEDLESLKQALSQP 210 (309)
T ss_pred CCeEEEECChHHHHHHHhccCCCeEEcCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999864211223345789999999999999999643 3566677776665
No 35
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.93 E-value=2.3e-24 Score=192.51 Aligned_cols=201 Identities=17% Similarity=0.235 Sum_probs=161.4
Q ss_pred EEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCce
Q 023130 71 VVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYM 150 (287)
Q Consensus 71 lviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v 150 (287)
.+.=++.+|+++.+++++ .|+.+++......+||+++|+|+++++||.++.+++.+|+ .+|+++++.|++.||+++++
T Consensus 6 ~~~~~p~~d~~~~~~~~~-~~~~~~~~~~~~~~GG~~~NvA~~l~~lG~~~~~i~~vG~-~~g~~i~~~l~~~gv~~~~~ 83 (309)
T PRK10294 6 TLTLAPSLDSATITPQIY-PEGKLRCSAPVFEPGGGGINVARAIAHLGGSATAIFPAGG-ATGEHLVSLLADENVPVATV 83 (309)
T ss_pred EEecChHHeEEEEeCcee-eCCeEEeccceecCCccHHHHHHHHHHcCCCeEEEEEecC-ccHHHHHHHHHHcCCCceEE
Confidence 344699999999999995 8889999999999999999999999999999999999996 79999999999999999999
Q ss_pred EEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCc--hhHhhhccccEEEEeCCCC----HHHHHHHHHHHHh
Q 023130 151 NVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD--EDLEVVKKAGIVLLQREIP----DSVNIQVAKAARS 224 (287)
Q Consensus 151 ~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~--~~~~~l~~a~~v~~~g~~~----~~~~~~~~~~a~~ 224 (287)
.+.+ + .++.++++++++|+++++.++++. ++.+++.. ...+.+..++++++++..+ .+.+.++++.+++
T Consensus 84 ~~~~--~-~~~~~~i~~~~~g~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~a~~ 158 (309)
T PRK10294 84 EAKD--W-TRQNLHVHVEASGEQYRFVMPGAA--LNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQK 158 (309)
T ss_pred ECCC--C-CeeeEEEEEcCCCcEEEEECCCCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 8765 4 455566677888998877776654 23332211 1113367799999998765 3678899999999
Q ss_pred CCCcEEEeCCCCCCCCchhh--ccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 225 AGVPVIFDAGGMDAPIPQEL--LNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 225 ~g~~v~~D~~~~~~~~~~~l--l~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
.|+++++|++... .... ++++|++++|++|++.|+|.+..+.+++.++++++++
T Consensus 159 ~g~~v~~D~~~~~---~~~~~~~~~~~~i~~n~~E~~~l~g~~~~~~~~~~~a~~~l~~ 214 (309)
T PRK10294 159 QGIRCIIDSSGDA---LSAALAIGNIELVKPNQKELSALVNRDLTQPDDVRKAAQELVN 214 (309)
T ss_pred cCCeEEEeCCCHH---HHHHHhcCCCeEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 9999999997531 2222 4689999999999999999766677777777777754
No 36
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.92 E-value=2.2e-24 Score=191.99 Aligned_cols=200 Identities=27% Similarity=0.352 Sum_probs=159.4
Q ss_pred EECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceE
Q 023130 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMN 151 (287)
Q Consensus 72 viG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~ 151 (287)
|-=++.+|+++.++++ ..++..+..+...++||.+.|+|+++++||.++.++|.+|+| +|+.+++.|++.||++.++.
T Consensus 4 ~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~GG~~~N~a~~l~~lg~~~~~i~~vG~D-~g~~i~~~l~~~gI~~~~i~ 81 (303)
T TIGR03168 4 VTLNPAIDLTIEVDGL-TPGEVNRVAAVRKDAGGKGINVARVLARLGAEVVATGFLGGF-TGEFIEALLAEEGIKNDFVE 81 (303)
T ss_pred EEcchHHeEEEEcCcc-ccCceeecCcccccCCcchhhHHHHHHHcCCCeEEEEEeCCc-hhHHHHHHHHHcCCCceEEE
Confidence 3346789999999996 778889998999999999999999999999999999999999 79999999999999999887
Q ss_pred EccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCc---hhHhhhccccEEEEeCC----CCHHHHHHHHHHHHh
Q 023130 152 VVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD---EDLEVVKKAGIVLLQRE----IPDSVNIQVAKAARS 224 (287)
Q Consensus 152 ~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~---~~~~~l~~a~~v~~~g~----~~~~~~~~~~~~a~~ 224 (287)
..+ .|+.++++++++|+++.+.+.+.. ++.+++.. ...+.+++++++++++. .+.+.+..+++.+++
T Consensus 82 ~~~----~t~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~ 155 (303)
T TIGR03168 82 VKG----ETRINVKIKESSGEETELNEPGPE--ISEEELEQLLEKLRELLASGDIVVISGSLPPGVPPDFYAQLIAIARK 155 (303)
T ss_pred CCC----CCEEeEEEEeCCCCEEEEeCcCCC--CCHHHHHHHHHHHHHhccCCCEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 653 678888888888888766655432 33333321 11234789999999875 345778889999999
Q ss_pred CCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 225 AGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 225 ~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+|+++++|++.. ...+.+..++|++++|++|+..++|....+.+++.++++.+.+
T Consensus 156 ~g~~v~~D~~~~--~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~~~~~~~~~~l~~ 210 (303)
T TIGR03168 156 RGAKVILDTSGE--ALREALAAKPFLIKPNHEELEELFGRELKTEEEIIEAARELLD 210 (303)
T ss_pred CCCEEEEECCcH--HHHHHHhcCCcEECCCHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 999999999853 2233444689999999999999999766666666666666654
No 37
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.92 E-value=2.4e-25 Score=200.23 Aligned_cols=181 Identities=14% Similarity=0.168 Sum_probs=150.2
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHc-CC--Cc--EEEEeecCCchHHHHHHHHHhC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKL-SH--PT--YFVGQVGEDANGKLITDALSGC 143 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~L-G~--~~--~lig~vG~D~~G~~i~~~L~~~ 143 (287)
+++++|++.+|++.. ++. ..+...+||+++|+|+++++| |. ++ .+++.+|+| +|+++++.|++.
T Consensus 1 ~~~~~G~~~~d~i~~------~~~----~~~~~~~GG~~~N~A~~~~~l~g~~~~~~~~~~~~vG~D-~G~~l~~~L~~~ 69 (328)
T cd01943 1 DFTTLGMFIIDEIEY------PDS----EPVTNVLGGAGTYAILGARLFLPPPLSRSISWIVDKGSD-FPKSVEDELESW 69 (328)
T ss_pred CccccCcEEeecccc------CCC----CccccccCCchhhHhhceeeecCCccccceeeEEecCCC-CCHHHHHHHHhc
Confidence 479999999999943 332 455788999999999999999 44 67 889999999 999999999999
Q ss_pred CCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCH--HHHHHHHHH
Q 023130 144 GVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPD--SVNIQVAKA 221 (287)
Q Consensus 144 gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~--~~~~~~~~~ 221 (287)
||++++ .+.+ +.+|+.++++++++|+|.++.+.+++..+.+++++. ..+..++++|+.+..+. +...++++.
T Consensus 70 GVd~~~-~~~~--~~~Tg~~~v~~~~~g~r~~~~~~~~~~~~~~~~l~~---~~~~~a~~~hl~~~~~~~~~~~~~~~~~ 143 (328)
T cd01943 70 GTGMVF-RRDP--GRLTTRGLNIYDGNDRRFFKYLTPKKRIDVSDDLNS---TPLIRSSCIHLICSPERCASIVDDIINL 143 (328)
T ss_pred CCceEE-EeCC--CCcchhhhhhcCCCCcceeeecCccccccccccccc---ccccCCCeEEEECCHHHHHHHHHHHHHH
Confidence 999998 7777 779999999998899999888888776666666653 34678999999887544 678889999
Q ss_pred HHh------CCCcEEEeCCCCC-----CCCchhhccCCcEEecCHHHHHhhcCCCC
Q 023130 222 ARS------AGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMPT 266 (287)
Q Consensus 222 a~~------~g~~v~~D~~~~~-----~~~~~~ll~~~dil~~Ne~E~~~l~g~~~ 266 (287)
+++ .+.++++|+++.. ++.+.++++++|++++|++|++.|+|...
T Consensus 144 a~~~~~d~~~g~~~~~d~~~~~~~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~ 199 (328)
T cd01943 144 FKLLKGNSPTRPKIVWEPLPDSCDPENLEDLLQALPRVDVFSPNLEEAARLLGLPT 199 (328)
T ss_pred HHhhccccCCccEEEEecCCcccChhhHHHHHHHhccCCEECCCHHHHHHHhCCCC
Confidence 998 8999999997541 12357899999999999999999999643
No 38
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.92 E-value=9e-24 Score=199.19 Aligned_cols=207 Identities=24% Similarity=0.281 Sum_probs=154.2
Q ss_pred CCCCEEEECCceeeeEeec--CCC-C-CCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHH
Q 023130 66 TPPPLVVVGSANFDIYVEI--DRL-P-KVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALS 141 (287)
Q Consensus 66 ~~~~IlviG~~~iD~~~~v--d~~-P-~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~ 141 (287)
..++|+|+|++++|+++.+ +++ | .+...+........+|| ++|+|+++++||.++.++|.+|+|.+|+++++.|+
T Consensus 9 ~~~~ilviG~~~lD~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG-a~NvA~~la~LG~~v~~i~~vG~D~~g~~i~~~L~ 87 (473)
T PRK11316 9 ERAGVLVVGDVMLDRYWYGPTSRISPEAPVPVVKVNQIEERPGG-AANVAMNIASLGAQARLVGLTGIDEAARALSKLLA 87 (473)
T ss_pred CCCcEEEECccEEeeeeecccceeCCCCCCCEEEeeeEEecCcH-HHHHHHHHHHcCCcEEEEEEEcCCHHHHHHHHHHH
Confidence 4467999999999999875 344 2 33446777888899999 69999999999999999999999999999999999
Q ss_pred hCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCC--HHHHHHHH
Q 023130 142 GCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIP--DSVNIQVA 219 (287)
Q Consensus 142 ~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~--~~~~~~~~ 219 (287)
+.||+++++.+ + +.+|+.++++++.+++...............+.+.....+.+.+++++++++... .+.+..++
T Consensus 88 ~~gI~~~~v~~-~--~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~v~is~~~~~~~~~~~~~~ 164 (473)
T PRK11316 88 AVGVKCDFVSV-P--THPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLLERIEQALPSIGALVLSDYAKGALASVQAMI 164 (473)
T ss_pred HcCCceeEEEc-C--CCCCCeeEEEEeCCceEEecccccCCCchhHHHHHHHHHHHhccCCEEEEecCCccchhHHHHHH
Confidence 99999998876 5 5689999999875544222111111111112222222235578899999975322 24578899
Q ss_pred HHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 220 KAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 220 ~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
+.++++|+++++||++.. ...++.+|++++|++|++.++|. ..+.+++.++++++..
T Consensus 165 ~~~k~~g~~vv~Dp~~~~----~~~~~~~dil~pN~~Ea~~l~g~-~~~~~~~~~~~~~l~~ 221 (473)
T PRK11316 165 QLARKAGVPVLIDPKGTD----FERYRGATLLTPNLSEFEAVVGK-CKDEAELVEKGMKLIA 221 (473)
T ss_pred HHHHhcCCeEEEeCCCCC----ccccCCCeEECcCHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 999999999999998642 23467899999999999999995 3456666666666653
No 39
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.92 E-value=7.7e-24 Score=184.78 Aligned_cols=169 Identities=23% Similarity=0.303 Sum_probs=136.9
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+|+|++++|++.. + ...++||+++|+|.++++||.++.++|.+|+|.+|+++++.|++.||+++
T Consensus 1 ~v~~iG~~~~D~~~~------~--------~~~~~GG~~~Nva~~la~lG~~~~~~~~vG~D~~g~~i~~~l~~~gI~~~ 66 (264)
T cd01940 1 RLAAIGDNVVDKYLH------L--------GKMYPGGNALNVAVYAKRLGHESAYIGAVGNDDAGAHVRSTLKRLGVDIS 66 (264)
T ss_pred CeEEEcceEEEEecc------C--------ceecCCCcHHHHHHHHHHcCCCeeEEecccCchhHHHHHHHHHHcCCChh
Confidence 589999999999832 1 35789999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeC-CCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCC
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG-GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGV 227 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~-ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~ 227 (287)
++.+.+ + +|+.++++ .++|+|++..+. ++.....+. +...+.+.+++++++++..+.+.+.++++.++++|+
T Consensus 67 ~v~~~~--~-~t~~~~~~-~~~g~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~g~ 139 (264)
T cd01940 67 HCRVKE--G-ENAVADVE-LVDGDRIFGLSNKGGVAREHPF---EADLEYLSQFDLVHTGIYSHEGHLEKALQALVGAGA 139 (264)
T ss_pred heEEcC--C-CCceEEEE-ecCCceEEEeecCCcHHhcccC---cccHhHHhcCCEEEEcccccHHHHHHHHHHHHHcCC
Confidence 998865 4 79998855 468899887664 332222111 223355789999999976656778899999999999
Q ss_pred cEEEeCCCCCCC-CchhhccCCcEEecCHHHH
Q 023130 228 PVIFDAGGMDAP-IPQELLNFIDILSPNESEL 258 (287)
Q Consensus 228 ~v~~D~~~~~~~-~~~~ll~~~dil~~Ne~E~ 258 (287)
+|++|++..+.. .+..+++++|++++|++|.
T Consensus 140 ~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~~ 171 (264)
T cd01940 140 LISFDFSDRWDDDYLQLVCPYVDFAFFSASDL 171 (264)
T ss_pred EEEEcCcccCCHHHHHhhcccCCEEEechhhc
Confidence 999999876422 2457789999999998775
No 40
>PLN02548 adenosine kinase
Probab=99.92 E-value=1.5e-24 Score=195.58 Aligned_cols=189 Identities=21% Similarity=0.321 Sum_probs=148.6
Q ss_pred ECCceeeeEeecCC--------------------CCCCCcEEEecCceeecCchHHHHHHH---HHHcCCCcEEEEeecC
Q 023130 73 VGSANFDIYVEIDR--------------------LPKVGETVAAKTSQTLAGGKGANQAAC---GAKLSHPTYFVGQVGE 129 (287)
Q Consensus 73 iG~~~iD~~~~vd~--------------------~P~~~~~~~~~~~~~~~GG~a~N~A~~---la~LG~~~~lig~vG~ 129 (287)
+|++.+|+++.+++ +|.+++.+........+||++.|+|.. ++++|.++.|+|.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~GG~~~Nva~~a~~l~~lg~~~~~ig~vG~ 80 (332)
T PLN02548 1 MGNPLLDISAVVDQDFLDKYDVKLNNAILAEEKHLPMYDELASKYNVEYIAGGATQNSIRVAQWMLQIPGATSYMGCIGK 80 (332)
T ss_pred CCCceeEEEEecCHHHHHHcCCCCCceeechHHHHHHHHHHhccCCceecCCcHHHHHHHHHHHHhcCCCcEEEEEEEcC
Confidence 47777777766443 555666777778899999999998654 4567999999999999
Q ss_pred CchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCc-hhHhhhccccEEEEeC
Q 023130 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGD-EDLEVVKKAGIVLLQR 208 (287)
Q Consensus 130 D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~-~~~~~l~~a~~v~~~g 208 (287)
|.+|+++++.|++.||+++++.. + +.+|+.++++++ +|+|+++.+.+++..+..+++.. ...+.+..++++++++
T Consensus 81 D~~g~~i~~~L~~~gVd~~~~~~-~--~~~T~~~~i~~~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 156 (332)
T PLN02548 81 DKFGEEMKKCATAAGVNVHYYED-E--STPTGTCAVLVV-GGERSLVANLSAANCYKVEHLKKPENWALVEKAKFYYIAG 156 (332)
T ss_pred ChhHHHHHHHHHHcCCceeeecc-C--CCCCceEEEEEe-cCCceeeeccchhhcCCHHHhcChhhHhHHhhCCEEEEEE
Confidence 99999999999999999998764 5 568999999986 79999887777655444443322 1234578899999987
Q ss_pred C---CCHHHHHHHHHHHHhCCCcEEEeCCCCC-----CCCchhhccCCcEEecCHHHHHhhcCCC
Q 023130 209 E---IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 209 ~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
. .+++.+..+++.++++|.++.+|++... .+.++++++++|++++|++|++.|+|..
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~ 221 (332)
T PLN02548 157 FFLTVSPESIMLVAEHAAANNKTFMMNLSAPFICEFFKDQLMEALPYVDFLFGNETEARTFAKVQ 221 (332)
T ss_pred EEccCCHHHHHHHHHHHHHcCCEEEEECCChhHHHHhHHHHHHHHhhCCEEEecHHHHHHHhCcc
Confidence 3 3567788899999999999989886421 1236678899999999999999999853
No 41
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.91 E-value=7.3e-24 Score=184.46 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=171.1
Q ss_pred EECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceE
Q 023130 72 VVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMN 151 (287)
Q Consensus 72 viG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~ 151 (287)
+-=++.+|+++.++++ +.|+..+......+|||+|.|||..|+.||.++..+|.+|.+ .|+++.+.|++.||...++.
T Consensus 5 vTLNPaiD~~~~l~~l-~~g~vNr~~~~~~~aGGKGINVa~vL~~lG~~~~a~GflGg~-tg~~~~~~l~~~gi~~~fv~ 82 (310)
T COG1105 5 VTLNPALDYTVFLDEL-ELGEVNRVRAVTKTAGGKGINVARVLKDLGIPVTALGFLGGF-TGEFFVALLKDEGIPDAFVE 82 (310)
T ss_pred EecChhHhheeecccc-cccceeeeccceecCCCCceeHHHHHHHcCCCceEEEecCCc-cHHHHHHHHHhcCCCceEEE
Confidence 3358999999999998 899999999999999999999999999999999999999997 99999999999999999988
Q ss_pred EccCCCCCCceEEEEEcC-CCCeeEEEeCCCCCCCCCcccC---chhHhhhccccEEEEeCCCC----HHHHHHHHHHHH
Q 023130 152 VVKDGGVPTGHAVVMLQS-DGQNSIIIVGGTNMSCWPEKFG---DEDLEVVKKAGIVLLQREIP----DSVNIQVAKAAR 223 (287)
Q Consensus 152 ~~~~~~~~T~~~~v~i~~-~Ger~~~~~~ga~~~~~~~~l~---~~~~~~l~~a~~v~~~g~~~----~~~~~~~~~~a~ 223 (287)
+.. +|+.++.+.++ +|+.|-+..+|+... ++++. +.....++..|+|+++|++| .+.+.++++.++
T Consensus 83 v~g----~TRinvki~~~~~~~~Tein~~Gp~is--~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~ 156 (310)
T COG1105 83 VKG----DTRINVKILDEEDGEETEINFPGPEIS--EAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILR 156 (310)
T ss_pred ccC----CCeeeEEEEecCCCcEEEecCCCCCCC--HHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 864 89999999987 566787777776543 33332 22223477899999999665 588999999999
Q ss_pred hCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhhh
Q 023130 224 SAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 224 ~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~~ 282 (287)
+.|+++++|.++. .+.+-+-...++++||.+|++.++|.+..+.++++++++++.++
T Consensus 157 ~~g~~vilD~Sg~--~L~~~L~~~P~lIKPN~~EL~~~~g~~~~~~~d~i~~a~~l~~~ 213 (310)
T COG1105 157 QQGAKVILDTSGE--ALLAALEAKPWLIKPNREELEALFGRELTTLEDVIKAARELLAE 213 (310)
T ss_pred hcCCeEEEECChH--HHHHHHccCCcEEecCHHHHHHHhCCCCCChHHHHHHHHHHHHC
Confidence 9999999999874 33344445699999999999999999989899999999986654
No 42
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=6e-23 Score=176.91 Aligned_cols=194 Identities=22% Similarity=0.299 Sum_probs=159.7
Q ss_pred CCEEEECCceeeeEeecCC-----CC-CCCcEEE--------------ecCceeecCchHHHHHHHHHHcCC---CcEEE
Q 023130 68 PPLVVVGSANFDIYVEIDR-----LP-KVGETVA--------------AKTSQTLAGGKGANQAACGAKLSH---PTYFV 124 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd~-----~P-~~~~~~~--------------~~~~~~~~GG~a~N~A~~la~LG~---~~~li 124 (287)
.-.+.+|++++|+...||. ++ +.+..+. .......+||++.|+++.+++++. .+.|+
T Consensus 7 ~il~G~gnpLLD~~a~Vd~~~L~KygL~~n~ail~d~~~~~~~~E~~~~~~~~~~AGGs~qNt~R~aq~~~~~p~~~~f~ 86 (343)
T KOG2854|consen 7 GILVGLGNPLLDISAVVDDEFLDKYGLKLNDAILADDKHLGLFDELMEGFNVKYSAGGSAQNTLRIAQWLLQQPGATVFF 86 (343)
T ss_pred ceeeccCccceeeeeccCHHHHHHcCCCCCcceecchhhHHHHHHHhhcccEEecCCchhHHHHHHHHHHccCCCceEEE
Confidence 4467789999999998775 32 2233222 234678999999999999999987 89999
Q ss_pred EeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccC-chhHhhhccccE
Q 023130 125 GQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFG-DEDLEVVKKAGI 203 (287)
Q Consensus 125 g~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~-~~~~~~l~~a~~ 203 (287)
|.||.|.+|+.+.+.+++.||+..+.. .+ +.+||.|.++++.++ |+++.+.++...+..+++. ++.+..++++.+
T Consensus 87 GsvG~Dk~ge~l~~~~~~aGv~~~yq~-~~--d~~TGtCavli~~~n-RSL~anLgAAn~f~~dhl~~~~~~~lveka~v 162 (343)
T KOG2854|consen 87 GSVGKDKFGELLKSKARAAGVNVHYQV-KE--DGPTGTCAVLITGDN-RSLCANLGAANCFKVDHLDKEENWALVEKAKV 162 (343)
T ss_pred eeccCchHHHHHHHHHHhcCceEEEEe-cc--CCCCceEEEEEeCCC-cchhhccchhhccCHHHhcchhhhhhhhheeE
Confidence 999999999999999999999998654 45 569999999999776 9999999998888888884 346778999999
Q ss_pred EEEeCC---CCHHHHHHHHHHHHhCCCcEEEeCCCCC-----CCCchhhccCCcEEecCHHHHHhhcCCC
Q 023130 204 VLLQRE---IPDSVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 204 v~~~g~---~~~~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
+++.|. ..+++++.+.+.+.+.+.+.+++.+... ++.+..+++++||+|.||+|+++++...
T Consensus 163 ~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~ 232 (343)
T KOG2854|consen 163 FYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARAH 232 (343)
T ss_pred EEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHhh
Confidence 999984 4577899999999999988888887432 2335678899999999999999997654
No 43
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.88 E-value=7.2e-22 Score=172.15 Aligned_cols=166 Identities=21% Similarity=0.267 Sum_probs=131.5
Q ss_pred CCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
++|+++|++++|++.+. + ..++||++.|+|.++++||.++.++|.+|+|.+|+++++.|++.||++
T Consensus 1 ~~v~~iG~~~~D~~~~~------~--------~~~~GG~~~NvA~~l~~lG~~~~~is~vG~D~~g~~i~~~l~~~gI~~ 66 (260)
T PRK09813 1 KKLATIGDNCVDIYPQL------G--------KAFSGGNAVNVAVYCTRYGIQPGCITWVGDDDYGTKLKQDLARMGVDI 66 (260)
T ss_pred CeEEEeccceeeecccC------C--------ccccCccHHHHHHHHHHcCCcceEEEEecCcHHHHHHHHHHHHcCCcc
Confidence 47999999999998432 2 258999999999999999999999999999999999999999999999
Q ss_pred CceEEccCCCCCCceEEEEEcCCCCeeEEEeC-CCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCC
Q 023130 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG-GTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (287)
Q Consensus 148 ~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~-ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g 226 (287)
+++.+.+ + +|+.+++.++ +|+|++..+. +....+ .+.+...+.+..+++++++... ...++++.++++|
T Consensus 67 ~~~~~~~--~-~t~~~~~~~~-~~~r~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v~~~~~~---~~~~~~~~~~~~~ 136 (260)
T PRK09813 67 SHVHTKH--G-VTAQTQVELH-DNDRVFGDYTEGVMADF---ALSEEDYAWLAQYDIVHAAIWG---HAEDAFPQLHAAG 136 (260)
T ss_pred hheeeec--C-CCceEEEEEe-CCcEEeeccCCCccccc---ccCHHHHHHHHhCCEEEEeccc---hHHHHHHHHHHcC
Confidence 9998876 5 7899888885 6888876554 332221 2233334568889999986422 2456778888999
Q ss_pred CcEEEeCCCCCC-CCchhhccCCcEEecCHHH
Q 023130 227 VPVIFDAGGMDA-PIPQELLNFIDILSPNESE 257 (287)
Q Consensus 227 ~~v~~D~~~~~~-~~~~~ll~~~dil~~Ne~E 257 (287)
+++++|++..+. .....+++++|++++|+++
T Consensus 137 ~~v~~D~~~~~~~~~~~~~~~~~d~~~~~~~~ 168 (260)
T PRK09813 137 KLTAFDFSDKWDSPLWQTLVPHLDYAFASAPQ 168 (260)
T ss_pred CeEEEEcCCCccHHHHHHhCCceeEEEecCCc
Confidence 999999986532 3456789999999998653
No 44
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.87 E-value=8.8e-21 Score=164.58 Aligned_cols=183 Identities=15% Similarity=0.194 Sum_probs=131.7
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+++|+.++|++...+ +....+||+++|+|+++++||.++.++|.+|+|..|+ ++.|++.||++.
T Consensus 1 ~il~iG~~~iD~~~~~~------------~~~~~~GG~~~Nva~~la~lG~~~~~i~~vG~D~~g~--~~~l~~~gv~~~ 66 (254)
T cd01937 1 KIVIIGHVTIDEIVTNG------------SGVVKPGGPATYASLTLSRLGLTVKLVTKVGRDYPDK--WSDLFDNGIEVI 66 (254)
T ss_pred CeEEEcceeEEEEecCC------------ceEEecCchhhhHHHHHHHhCCCeEEEEeeCCCchHH--HHHHHHCCcEEE
Confidence 58999999999996432 3468899999999999999999999999999999998 688999999964
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCc
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVP 228 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~ 228 (287)
... ...|+.+++.++.+|+++++.+.+++..... . ...+.+++++++++ .+++....+.+.+ .+
T Consensus 67 --~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~ 130 (254)
T cd01937 67 --SLL---STETTTFELNYTNEGRTRTLLAKCAAIPDTE--S----PLSTITAEIVILGP-VPEEISPSLFRKF----AF 130 (254)
T ss_pred --Eec---CCCeEEEEEEecCCCCeeeeeccccCCcccc--c----ccccCcccEEEECC-CcchhcHHHHhhh----hh
Confidence 333 3367777777777788888877765432211 1 13467899999965 4555444444333 78
Q ss_pred EEEeCCCCCCCC------chhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhhhcccC
Q 023130 229 VIFDAGGMDAPI------PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVG 286 (287)
Q Consensus 229 v~~D~~~~~~~~------~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~~v~v~ 286 (287)
|++|++..+..+ ..++++++|++++|++|++.+ .+.+++.+...+...+.+|.
T Consensus 131 v~~D~~~~~~~~~~~~~~~~~~l~~~di~~~n~~E~~~~-----~~~~~~~~~l~~~g~~~vvv 189 (254)
T cd01937 131 ISLDAQGFLRRANQEKLIKCVILKLHDVLKLSRVEAEVI-----STPTELARLIKETGVKEIIV 189 (254)
T ss_pred eeEccccceeeccccchHHHhhcccCcEEEEcHHHHhhc-----CCHHHHHHHHHHcCCCEEEE
Confidence 999998542111 357889999999999999983 23455554444443333443
No 45
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.85 E-value=9.8e-21 Score=166.46 Aligned_cols=195 Identities=17% Similarity=0.145 Sum_probs=134.8
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
.|+|+|++++|++- ..... ....+||++.|+|.++++|| ++.++|.+|+| +|+.+++.|++.||+++
T Consensus 1 ~v~~~G~~~~D~~~------~~~~~-----~~~~~GG~a~N~a~~la~lg-~v~~i~~vG~D-~g~~~~~~l~~~gi~~~ 67 (277)
T cd01946 1 SLLVVGSVAFDAIE------TPFGK-----VDKALGGSATYFSLSASYFT-DVRLVGVVGED-FPEEDYKLLNSHNIVTL 67 (277)
T ss_pred CeEEEEEeeeeeec------CCCce-----eeeccCchHHHHHHHHHHhc-cceeEEeccCc-ChHHHHHHHHhccCcce
Confidence 38999999999992 11111 34679999999999999998 69999999999 89999999999999999
Q ss_pred ceEEccCCCCCCceEEEEE--cCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCC
Q 023130 149 YMNVVKDGGVPTGHAVVML--QSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAG 226 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i--~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g 226 (287)
++.+.+ +.+|....... +.+++++.....+.. ..+.+...+.+++++++++++ .+++...++++.+++.
T Consensus 68 ~v~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~- 138 (277)
T cd01946 68 GLLSKE--DGKTFHWAGRYHYDLNEADTLDTDLNVF-----ADFDPQLPEHYKDSEFVFLGN-IAPELQREVLEQVKDP- 138 (277)
T ss_pred eEEEec--CCCeEEEeeEehhhcccccchhhhhhHH-----hhcCCCChHHhhcCCEEEECC-CCHHHHHHHHHHHHhC-
Confidence 998876 54562211110 012222222111111 122222235578899999965 5667788888888877
Q ss_pred CcEEEeCCCCC----CCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhhhcccCC
Q 023130 227 VPVIFDAGGMD----APIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVSVGT 287 (287)
Q Consensus 227 ~~v~~D~~~~~----~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~~v~v~t 287 (287)
.++++|+...+ .+.+.++++++|++++|++|++.|+|. .+.+++.+...+...+.+|.|
T Consensus 139 ~~v~~D~~~~~~~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~--~~~~~~~~~l~~~g~~~vvvt 201 (277)
T cd01946 139 KLVVMDTMNFWISIKPEKLKKVLAKVDVVIINDGEARQLTGA--ANLVKAARLILAMGPKALIIK 201 (277)
T ss_pred CEEEEccHHHhhhhhHHHHHHHhccCCEEeCCHHHHHHHhCC--chHHHHHHHHHHcCCCEEEEe
Confidence 88999984322 123567899999999999999999984 344455444444444444443
No 46
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.84 E-value=1e-19 Score=163.59 Aligned_cols=170 Identities=15% Similarity=0.083 Sum_probs=139.0
Q ss_pred CCCCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCC
Q 023130 65 NTPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (287)
Q Consensus 65 ~~~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~g 144 (287)
.+.++|+|+|++++|+++.+ ++. ....+||+++|+|.++++||.++.++|++|+|.. .+
T Consensus 9 ~~~~~vlvvG~~~~D~i~~~------g~~-----~~~~~GG~a~N~A~alarLG~~~~lis~VG~D~~----------~~ 67 (335)
T PLN02630 9 IPQRRVLIVGNYCHDVLIQN------GSV-----TAESLGGAASFISNVLDALSVECELVSKVGPDFL----------YQ 67 (335)
T ss_pred CCCCCEEEEeeeeeeEEEeC------CcE-----EEEecCcHHHHHHHHHHHcCCceEEEEEecCCcc----------cc
Confidence 35578999999999999764 221 4578999999999999999999999999999942 37
Q ss_pred CCCCceEEccCCCCCCceEEEEEcC-----CCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHH
Q 023130 145 VRLDYMNVVKDGGVPTGHAVVMLQS-----DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVA 219 (287)
Q Consensus 145 Vd~~~v~~~~~~~~~T~~~~v~i~~-----~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~ 219 (287)
|+...+.. + +.+|+.+++++++ +|+++++...+++..+++++++.. .+..+++++++++.++++...++
T Consensus 68 v~~~~~~~-~--~~~T~~~~~~~~~g~~~~~~e~~i~~~~ga~~~l~~~di~~~---~~~~~~~~~l~~ei~~e~~~~~~ 141 (335)
T PLN02630 68 VSHPPIVI-P--DSKTTEFHADFDQGIDGNGHEDRVLKRVCACDPIEPSDIPDM---RYEFGMAVGVAGEILPETLERMV 141 (335)
T ss_pred ccccceec-C--CCCceEEEEEEcCCcccCCCCeEEEEeccccCCCChHHCCHH---HhcccceeeecCCCcHHHHHHHH
Confidence 77665544 5 6689999998876 578999999999988887777542 46778899998888888899999
Q ss_pred HHHHh-----CCCcEEEeCCCCC-C--C----CchhhccCCcEEecCHHHHHhh
Q 023130 220 KAARS-----AGVPVIFDAGGMD-A--P----IPQELLNFIDILSPNESELGRL 261 (287)
Q Consensus 220 ~~a~~-----~g~~v~~D~~~~~-~--~----~~~~ll~~~dil~~Ne~E~~~l 261 (287)
+.|+. +|+.+++|+++.. . . ...++++++|++++|++|++.+
T Consensus 142 ~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~~~~~~~~L~~iDil~~ne~Ea~~l 195 (335)
T PLN02630 142 EICDVVVVDIQALIRVFDPVDGTVKLVKLEETGFYDMLPRIGFLKASSEEALFI 195 (335)
T ss_pred HHhhhheeccCceEEecCCcccccccchhhHHHHHHHHHhCCEEEecHHHHhhc
Confidence 99988 7999999998631 1 1 1347899999999999999887
No 47
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.82 E-value=1e-18 Score=154.09 Aligned_cols=211 Identities=24% Similarity=0.279 Sum_probs=159.1
Q ss_pred CCCCCCCEEEECCceeeeEee--cCCCC--CCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHH
Q 023130 63 PINTPPPLVVVGSANFDIYVE--IDRLP--KVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITD 138 (287)
Q Consensus 63 ~~~~~~~IlviG~~~iD~~~~--vd~~P--~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~ 138 (287)
+.....+|+|+|++++|.|++ ++++. .+-..+.+......+|| ++|||.+++.||.++.++|.+|+|..|+.+.+
T Consensus 6 ~~f~~~kVLVvGDvmLDrY~~G~~~RISPEAPVPVv~v~~e~~rlGG-AaNVa~NiasLGa~a~l~GvvG~Deag~~L~~ 84 (467)
T COG2870 6 PNFKQAKVLVVGDVMLDRYWYGKVSRISPEAPVPVVKVEKEEERLGG-AANVAKNIASLGANAYLVGVVGKDEAGKALIE 84 (467)
T ss_pred hhhcCCcEEEEcceeeeeeccccccccCCCCCCceEEeccccccccc-HHHHHHHHHHcCCCEEEEEeeccchhHHHHHH
Confidence 345677999999999999986 44442 12346777888899999 69999999999999999999999999999999
Q ss_pred HHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCC--CCCCCCcccCchhHhhhccccEEEEeCCCCH--HH
Q 023130 139 ALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGT--NMSCWPEKFGDEDLEVVKKAGIVLLQREIPD--SV 214 (287)
Q Consensus 139 ~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga--~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~--~~ 214 (287)
.|.+.+|+ ..+.+++ +.+|..-.-++..+ +.++-..-. ........+.+...+.+.+.+.++++.+--- ..
T Consensus 85 ~l~~~~i~-~~l~~~~--~r~T~~K~Rv~s~n--QQllRvD~Ee~~~~~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~ 159 (467)
T COG2870 85 LLKANGID-SDLLRDK--NRPTIVKLRVLSRN--QQLLRLDFEEKFPIEDENKLLEKIKNALKSFDALVLSDYAKGVLTN 159 (467)
T ss_pred HHHhcCcc-cceEeec--CCCceeeeeeeccc--ceEEEecccccCcchhHHHHHHHHHHHhhcCCEEEEeccccccchh
Confidence 99999999 4566666 77999888888643 333322211 1111112222334466788999999864221 12
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhhhcc
Q 023130 215 NIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHKMVS 284 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~~v~ 284 (287)
+..+++.||+.|++|.+||.+.+ -+.+..+.++.||..|+++..|.. .+.+++.+.+++|.+...
T Consensus 160 ~q~~I~~ar~~~~pVLvDPKg~D----f~~Y~GAtLiTPN~~E~~~~vg~~-~~e~el~~~g~kL~~~~~ 224 (467)
T COG2870 160 VQKMIDLAREAGIPVLVDPKGKD----FEKYRGATLITPNLKEFEEAVGKC-KSEEELEERGQKLKEELD 224 (467)
T ss_pred HHHHHHHHHHcCCcEEECCCCcc----hhhhCCCeecCCCHHHHHHHHccc-ccHHHHHHHHHHHHHhhC
Confidence 78899999999999999998753 246788999999999999999985 455788888888877543
No 48
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.82 E-value=8.8e-19 Score=145.76 Aligned_cols=138 Identities=33% Similarity=0.445 Sum_probs=119.9
Q ss_pred CEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCC
Q 023130 69 PLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 69 ~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
+|+++|++++|.++.++++|..++.++.......+||+|.|+|.++++||.++.++|
T Consensus 1 ~v~~iG~~~~D~~~~~~~~~~~~~~~~~~~~~~~~GG~~~n~a~~l~~LG~~~~~~~----------------------- 57 (196)
T cd00287 1 RVLVVGSLLVDVILRVDALPLPGGLVRPGDTEERAGGGAANVAVALARLGVSVTLVG----------------------- 57 (196)
T ss_pred CEEEEccceEEEEEEeccCCCCCCeEEeceeeecCCCcHHHHHHHHHHCCCcEEEEE-----------------------
Confidence 589999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCH-HHHHHHHHHHHhCCC
Q 023130 149 YMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPD-SVNIQVAKAARSAGV 227 (287)
Q Consensus 149 ~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~-~~~~~~~~~a~~~g~ 227 (287)
++++++++..+. +.+.++++.+++.|+
T Consensus 58 ----------------------------------------------------~~~v~i~~~~~~~~~~~~~~~~~~~~~~ 85 (196)
T cd00287 58 ----------------------------------------------------ADAVVISGLSPAPEAVLDALEEARRRGV 85 (196)
T ss_pred ----------------------------------------------------ccEEEEecccCcHHHHHHHHHHHHHcCC
Confidence 789999887765 678889999999999
Q ss_pred cEEEeCCCCCCCC----chhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 228 PVIFDAGGMDAPI----PQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 228 ~v~~D~~~~~~~~----~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
++++|++.....+ +.++++++|++++|++|++.|+|.+..+.++..++++++.+
T Consensus 86 ~v~~D~~~~~~~~~~~~~~~~~~~~dvl~~n~~E~~~l~~~~~~~~~~~~~~~~~l~~ 143 (196)
T cd00287 86 PVVLDPGPRAVRLDGEELEKLLPGVDILTPNEEEAEALTGRRDLEVKEAAEAAALLLS 143 (196)
T ss_pred eEEEeCCccccccccchHHHHHhhCCEECCCHHHHHHHhCCCCCChHHHHHHHHHHHh
Confidence 9999998764332 35688999999999999999999766666666666666543
No 49
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=9e-18 Score=138.72 Aligned_cols=200 Identities=14% Similarity=0.216 Sum_probs=160.4
Q ss_pred CCCCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCC
Q 023130 66 TPPPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (287)
Q Consensus 66 ~~~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gV 145 (287)
+++.|+|+|...+|++-.+|..|.++...+..+-.++-||.+.|++..+..||.++.|+|.+.....-+.+++.|++.||
T Consensus 3 ~~k~VLcVG~~~lD~iTivd~~~fe~~~~r~~~g~wqRgG~asNvcTvlrlLG~~cef~Gvlsr~~~f~~lLddl~~rgI 82 (308)
T KOG2947|consen 3 EPKQVLCVGCTVLDVITIVDKYPFEDSEIRCLSGRWQRGGNASNVCTVLRLLGAPCEFFGVLSRGHVFRFLLDDLRRRGI 82 (308)
T ss_pred CcceEEEeccEEEEEEEeccCCCCCccceehhhhhhhcCCCcchHHHHHHHhCCchheeeecccchhHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred CCCceEEccCCCCCCceEEEEEc-CCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHH-
Q 023130 146 RLDYMNVVKDGGVPTGHAVVMLQ-SDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAAR- 223 (287)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~v~i~-~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~- 223 (287)
|+++..... . ..+.+.++++ ..|.|+++.+.......+.+++.. -.+.+.+|+|+.+.-|.+++ ++++...
T Consensus 83 dishcpftd--~-~pp~ssiI~~r~s~trTil~~dks~p~vT~~dF~k---vdl~qy~WihfE~Rnp~etl-kM~~~I~~ 155 (308)
T KOG2947|consen 83 DISHCPFTD--H-SPPFSSIIINRNSGTRTILYCDKSLPDVTATDFEK---VDLTQYGWIHFEARNPSETL-KMLQRIDA 155 (308)
T ss_pred CcccCcccc--C-CCCcceEEEecCCCceEEEEecCCCccccHHHhhh---cccceeeeEEEecCChHHHH-HHHHHHHH
Confidence 999988775 4 6666666666 468899998887776666666642 22678999999998887753 3333222
Q ss_pred -------hCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHH
Q 023130 224 -------SAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAV 276 (287)
Q Consensus 224 -------~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~ 276 (287)
+.++.|++|.... .+....+...+|+++.+.+-++.+. ..++.++.+..
T Consensus 156 ~N~r~pe~qrI~vSvd~en~-req~~~l~am~DyVf~sK~~a~~~g---fks~rea~~~l 211 (308)
T KOG2947|consen 156 HNTRQPEEQRIRVSVDVENP-REQLFQLFAMCDYVFVSKDVAKHLG---FKSPREACEGL 211 (308)
T ss_pred hhcCCCccceEEEEEEecCc-HHHHHHHhhcccEEEEEHHHHhhhc---cCCHHHHHHHH
Confidence 2367789998654 3556678899999999999888873 23455544433
No 50
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.98 E-value=3.7e-09 Score=95.30 Aligned_cols=143 Identities=24% Similarity=0.319 Sum_probs=103.9
Q ss_pred CCEEEECCceeeeEeecCCCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 68 PPLVVVGSANFDIYVEIDRLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
.+-+|+|...+|..+.+|+--+.+.........+..||.+.|.|.++++||.++.||++||+|..|++.+.
T Consensus 341 ~KPv~vGa~i~D~~~k~d~d~K~dG~sy~~~~~Qa~GGVarN~A~a~~~lg~d~~liSavG~d~n~~~~~~--------- 411 (614)
T KOG3009|consen 341 RKPVSVGATIVDFEAKTDEDVKDDGGSYNGQVVQAMGGVARNHADALARLGCDSVLISAVGDDNNGHFFRQ--------- 411 (614)
T ss_pred cCceeecceEEEeEEeecccccccCCcccchhhhhccchhhhHHHHHHHhcCCeeEEEEeccCCcchhhhh---------
Confidence 34499999999999999874455555555566788999999999999999999999999999931111100
Q ss_pred CceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCC
Q 023130 148 DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGV 227 (287)
Q Consensus 148 ~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~ 227 (287)
. . ..+.+...+.+ .+++++++++++...+.++++ |+.+..
T Consensus 412 ------~---------------~-----------------~~~~e~~~dl~-~a~~I~~DsNiS~~~Ma~il~-ak~~k~ 451 (614)
T KOG3009|consen 412 ------N---------------S-----------------HKIVESNEDLL-SADFILLDSNISVPVMARILE-AKKHKK 451 (614)
T ss_pred ------h---------------h-----------------hhhhhhhhhhh-cCCEEEEcCCCCHHHHHHHHH-hhhccC
Confidence 0 0 00011111334 799999999999988888888 999999
Q ss_pred cEEEeCCCCCCC---CchhhccCCcEEecCHHHHH
Q 023130 228 PVIFDAGGMDAP---IPQELLNFIDILSPNESELG 259 (287)
Q Consensus 228 ~v~~D~~~~~~~---~~~~ll~~~dil~~Ne~E~~ 259 (287)
+|+|.|...++. +..-....++.+.||..|+.
T Consensus 452 ~V~fEPTd~~k~~K~fk~l~v~~i~~i~PN~~Ell 486 (614)
T KOG3009|consen 452 QVWFEPTDIDKVKKVFKTLLVGAITAISPNANELL 486 (614)
T ss_pred ceEecCCCchhhhhhhhhcceeeEEeeCCCHHHHH
Confidence 999999865321 11122235899999999974
No 51
>PRK12412 pyridoxal kinase; Reviewed
Probab=98.34 E-value=7.8e-06 Score=71.61 Aligned_cols=145 Identities=16% Similarity=0.111 Sum_probs=93.9
Q ss_pred EEEeecCCchH-HHHHHH---HHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhh
Q 023130 123 FVGQVGEDANG-KLITDA---LSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVV 198 (287)
Q Consensus 123 lig~vG~D~~G-~~i~~~---L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l 198 (287)
.++.-|.|+.| .-+..+ ++..|+.. .+..++++.-+..+......++. .++.+.++....+
T Consensus 4 vl~iag~D~sggaGi~aD~~t~~~lg~~~----------~~v~Ta~t~q~~~~~~~~~v~~~-----~~~~i~~q~~~l~ 68 (268)
T PRK12412 4 ALTIAGSDTSGGAGIQADLKTFQELGVYG----------MTSLTTIVTMDPHNGWAHNVFPI-----PASTLKPQLETTI 68 (268)
T ss_pred EEEEEeeCCCchHHHHHHHHHHHHcCCee----------ceeeeEEEeEcCCCCcEEEEEeC-----CHHHHHHHHHHHH
Confidence 46666777655 444444 45666553 24555666665554333333332 1233333333444
Q ss_pred cc--ccEEEEeCCCCHHHHHHHHHHHHhCCCc-EEEeCCCCC-------C-----CCchhhccCCcEEecCHHHHHhhcC
Q 023130 199 KK--AGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGMD-------A-----PIPQELLNFIDILSPNESELGRLTG 263 (287)
Q Consensus 199 ~~--a~~v~~~g~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~-------~-----~~~~~ll~~~dil~~Ne~E~~~l~g 263 (287)
+. .+.+.+.--.+.+.+..+++.+++.+.+ +++||.... . .+.+.+++++|+++||+.|++.|+|
T Consensus 69 ~d~~~~~ikiG~l~~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g 148 (268)
T PRK12412 69 EGVGVDALKTGMLGSVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQLSG 148 (268)
T ss_pred hCCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHHhC
Confidence 44 7888876555677888888999988876 999996321 1 1134578999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 023130 264 MPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~ 282 (287)
.+..+.+++.++++++.++
T Consensus 149 ~~~~~~~~~~~aa~~l~~~ 167 (268)
T PRK12412 149 VKINSLEDMKEAAKKIHAL 167 (268)
T ss_pred cCCCCHHHHHHHHHHHHhc
Confidence 8767778888888887653
No 52
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=98.28 E-value=1e-05 Score=70.08 Aligned_cols=146 Identities=18% Similarity=0.288 Sum_probs=90.8
Q ss_pred cEEEEeecCCch-HHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhc
Q 023130 121 TYFVGQVGEDAN-GKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVK 199 (287)
Q Consensus 121 ~~lig~vG~D~~-G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~ 199 (287)
...++.-|.|+. |.-+..+++-..--. .. +..+..++...+..|. .+. .-. .+.+.. .++.+.
T Consensus 4 ~~vl~iag~d~~ggaG~~aD~~~~~~~~-----~~--~~~~~t~~t~~~~~G~-~v~--~~~-----~~~l~~-~l~~l~ 67 (253)
T PRK12413 4 NYILAISGNDIFSGGGLHADLATYTRNG-----LH--GFVAVTCLTAMTEKGF-EVF--PVD-----KEIFQQ-QLDSLK 67 (253)
T ss_pred CeEEEEeeeCCCCHHHHHHHHHHHHHcC-----Cc--cCeeeEEEecccCCce-EEE--ECC-----HHHHHH-HHHHhh
Confidence 456777888855 466777775442111 11 3466777777777774 221 111 122322 222234
Q ss_pred cccEEEEe-CCCC-HHHHHHHHHHHH-hCCCcEEEeCCCCCCCC-----------chhhccCCcEEecCHHHHHhhcCCC
Q 023130 200 KAGIVLLQ-REIP-DSVNIQVAKAAR-SAGVPVIFDAGGMDAPI-----------PQELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 200 ~a~~v~~~-g~~~-~~~~~~~~~~a~-~~g~~v~~D~~~~~~~~-----------~~~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
..++..+. |.++ .+....+++.++ +.++++++||......+ +.++++++|+++||++|++.|+|.+
T Consensus 68 ~~~~~~i~~G~l~~~~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~ 147 (253)
T PRK12413 68 DVPFSAIKIGLLPNVEIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKE 147 (253)
T ss_pred CCCCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcC
Confidence 44554443 5554 344566666665 46899999997553222 2356899999999999999999987
Q ss_pred CCCHHHHHHHHHHHhhh
Q 023130 266 TDSYEQISEAVVKCHKM 282 (287)
Q Consensus 266 ~~~~~~~~~~~~~l~~~ 282 (287)
..+.+++.++++++.++
T Consensus 148 ~~~~~~~~~~a~~l~~~ 164 (253)
T PRK12413 148 IKTLEDMKEAAKKLYDL 164 (253)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 77778888888887653
No 53
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=98.06 E-value=1.6e-05 Score=68.40 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=59.8
Q ss_pred cccEEEEeCCCC-HHHHHHHHHHHHhC-CCcEEEeCCCCCC------------CCchhhccCCcEEecCHHHHHhhcCCC
Q 023130 200 KAGIVLLQREIP-DSVNIQVAKAARSA-GVPVIFDAGGMDA------------PIPQELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 200 ~a~~v~~~g~~~-~~~~~~~~~~a~~~-g~~v~~D~~~~~~------------~~~~~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
+.+.+.+ |.+. .+.+..+.+.+++. ++++++||..... .+.+.+++++|+++||+.|++.|+|.+
T Consensus 68 ~~~~i~~-G~l~~~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~ 146 (242)
T cd01169 68 PVDAIKI-GMLGSAEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELLTGLE 146 (242)
T ss_pred CCCEEEE-CCCCCHHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHHhCCC
Confidence 4677777 5554 67778888888876 8999999975321 112346689999999999999999976
Q ss_pred CCCHHHHHHHHHHHhh
Q 023130 266 TDSYEQISEAVVKCHK 281 (287)
Q Consensus 266 ~~~~~~~~~~~~~l~~ 281 (287)
..+.++..++++++.+
T Consensus 147 ~~~~~~~~~~~~~l~~ 162 (242)
T cd01169 147 IATEEDMMKAAKALLA 162 (242)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6566666666666654
No 54
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=97.96 E-value=4.5e-05 Score=66.21 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=62.1
Q ss_pred ccEEEEeCCCCHHHHHHHHHHHHhCCC-cEEEeCCCCCC---C---------CchhhccCCcEEecCHHHHHhhcCCCCC
Q 023130 201 AGIVLLQREIPDSVNIQVAKAARSAGV-PVIFDAGGMDA---P---------IPQELLNFIDILSPNESELGRLTGMPTD 267 (287)
Q Consensus 201 a~~v~~~g~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~---~---------~~~~ll~~~dil~~Ne~E~~~l~g~~~~ 267 (287)
.+.+.+.--.+.+.+..+++.+++++. ++++||..... . ..+.+++++|+++||..|++.|+|.+..
T Consensus 68 ~~aikiG~l~~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~~ 147 (254)
T TIGR00097 68 VDAAKTGMLASAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLEEEAIEALRKRLLPLATLITPNLPEAEALLGTKIR 147 (254)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCCHHHHHHHHHhccccccEecCCHHHHHHHhCCCCC
Confidence 566766433456778889999999998 69999864211 1 1235789999999999999999997666
Q ss_pred CHHHHHHHHHHHhhh
Q 023130 268 SYEQISEAVVKCHKM 282 (287)
Q Consensus 268 ~~~~~~~~~~~l~~~ 282 (287)
+.+++.++++++.++
T Consensus 148 ~~~~~~~~a~~l~~~ 162 (254)
T TIGR00097 148 TEQDMIKAAKKLREL 162 (254)
T ss_pred CHHHHHHHHHHHHhc
Confidence 777888888887643
No 55
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=97.95 E-value=4.7e-05 Score=66.80 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=64.7
Q ss_pred hhhccccEEEEeCCCCH-HHHHHHHHHHHhCCCcEEEeCCCCCCCCchhh---ccCCcEEecCHHHHHhhcCCCCCCHHH
Q 023130 196 EVVKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIFDAGGMDAPIPQEL---LNFIDILSPNESELGRLTGMPTDSYEQ 271 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~l---l~~~dil~~Ne~E~~~l~g~~~~~~~~ 271 (287)
+.+..++++++.+.++. +.+.++++.+++.+.++++|+... .+.... ....++++||..|++.|+|.+..+.++
T Consensus 88 ~~~~~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa~g~--~l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~~ 165 (272)
T TIGR00196 88 ELLERYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDADAL--NLLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQGD 165 (272)
T ss_pred hhhccCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEhHHH--HHHhhcccccCCCEEECCCHHHHHHHhCCchhhhhh
Confidence 44678899999876653 346788889999999999999753 111111 346899999999999999976556678
Q ss_pred HHHHHHHHhhh
Q 023130 272 ISEAVVKCHKM 282 (287)
Q Consensus 272 ~~~~~~~l~~~ 282 (287)
..++++++.++
T Consensus 166 ~~~aa~~l~~~ 176 (272)
T TIGR00196 166 RLEAAQDIAQK 176 (272)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 56
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=97.92 E-value=6.5e-05 Score=64.79 Aligned_cols=93 Identities=26% Similarity=0.329 Sum_probs=64.3
Q ss_pred cCchhHhhhccccEEEEeCCCCH----HHHHHHHHHHHhCCCcEEEeCCCCCCC-----Cchhhcc--CCcEEecCHHHH
Q 023130 190 FGDEDLEVVKKAGIVLLQREIPD----SVNIQVAKAARSAGVPVIFDAGGMDAP-----IPQELLN--FIDILSPNESEL 258 (287)
Q Consensus 190 l~~~~~~~l~~a~~v~~~g~~~~----~~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~ll~--~~dil~~Ne~E~ 258 (287)
..+...+.+++++++++...+.. +.+..+++.++++++++++||...... ...+++. .+|++.||..|+
T Consensus 39 ~~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~~~~~~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 39 APEEVEELAKIAGALVINIGTLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGATSFRTEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred CHHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHHHHHhcCCCEEEcccccCcchhHHHHHHHHHhcCCCeEEcCCHHHH
Confidence 33445567888999998753322 445556667888999999999743211 1234454 499999999999
Q ss_pred HhhcCCCCCC---------HHHHHHHHHHHhhh
Q 023130 259 GRLTGMPTDS---------YEQISEAVVKCHKM 282 (287)
Q Consensus 259 ~~l~g~~~~~---------~~~~~~~~~~l~~~ 282 (287)
+.|+|.+... .+++.++++++.++
T Consensus 119 ~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~ 151 (242)
T cd01170 119 AALAGLTGLGKGVDSSSSDEEDALELAKALARK 151 (242)
T ss_pred HHHhCCCCCcCcccCCCcchHHHHHHHHHHHHH
Confidence 9999975421 56777888887654
No 57
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=97.89 E-value=6.8e-05 Score=65.00 Aligned_cols=83 Identities=24% Similarity=0.286 Sum_probs=60.3
Q ss_pred ccccEEEEeCCCC----HHHHHHHHHHHHhC--CCcEEEeCCCCC--C---------CCchhhcc-CCcEEecCHHHHHh
Q 023130 199 KKAGIVLLQREIP----DSVNIQVAKAARSA--GVPVIFDAGGMD--A---------PIPQELLN-FIDILSPNESELGR 260 (287)
Q Consensus 199 ~~a~~v~~~g~~~----~~~~~~~~~~a~~~--g~~v~~D~~~~~--~---------~~~~~ll~-~~dil~~Ne~E~~~ 260 (287)
...+++ ..|.++ .+.+.++++.++++ +++|++||+... . +.+.+++. ++|+++||++|++.
T Consensus 71 ~~~~~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~~ 149 (254)
T cd01173 71 LEYDAV-LTGYLGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELEL 149 (254)
T ss_pred ccCCEE-EEecCCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHHH
Confidence 456777 455554 35677888888876 899999996321 0 11234455 99999999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHhhh
Q 023130 261 LTGMPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 261 l~g~~~~~~~~~~~~~~~l~~~ 282 (287)
|+|.+..+.+++.++++++.++
T Consensus 150 l~g~~~~~~~~~~~~~~~l~~~ 171 (254)
T cd01173 150 LTGKKINDLEDAKAAARALHAK 171 (254)
T ss_pred HcCCCcCCHHHHHHHHHHHHHh
Confidence 9998777777888888887654
No 58
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=97.89 E-value=4.2e-05 Score=66.37 Aligned_cols=87 Identities=16% Similarity=0.218 Sum_probs=62.7
Q ss_pred hhhccccEEEEeCCCCH-HHHHHHHHHHHhCCCcEEEeCCCCCCCCch---hhccCCcEEecCHHHHHhhcCCCCCC-HH
Q 023130 196 EVVKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIFDAGGMDAPIPQ---ELLNFIDILSPNESELGRLTGMPTDS-YE 270 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~-~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~---~ll~~~dil~~Ne~E~~~l~g~~~~~-~~ 270 (287)
..+.+.+++++...++. +.+..+++.++++++++++|+......... .+.+.+++++||..|++.|+|.+..+ .+
T Consensus 73 ~~~~~~d~v~ig~gl~~~~~~~~i~~~~~~~~~pvVlDa~~~~~~~~~~~~~~~~~~~iltPn~~E~~~L~g~~~~~~~~ 152 (254)
T cd01171 73 ELLERADAVVIGPGLGRDEEAAEILEKALAKDKPLVLDADALNLLADEPSLIKRYGPVVLTPHPGEFARLLGALVEEIQA 152 (254)
T ss_pred hhhccCCEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEcHHHHHhhcChhhhccCCCEEECCCHHHHHHHhCCChhhhhh
Confidence 44667899999876765 678889999999999999999754211001 14578999999999999999975433 23
Q ss_pred HHHHHHHHHhhh
Q 023130 271 QISEAVVKCHKM 282 (287)
Q Consensus 271 ~~~~~~~~l~~~ 282 (287)
+..++++++.++
T Consensus 153 ~~~~~a~~l~~~ 164 (254)
T cd01171 153 DRLAAAREAAAK 164 (254)
T ss_pred HHHHHHHHHHHH
Confidence 455666666554
No 59
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=97.84 E-value=8e-05 Score=65.01 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=57.8
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCC-cEEEeCCCCCC---C---------CchhhccCCcEEecCHHHHHhhcCCCC
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGV-PVIFDAGGMDA---P---------IPQELLNFIDILSPNESELGRLTGMPT 266 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~---~---------~~~~ll~~~dil~~Ne~E~~~l~g~~~ 266 (287)
..+.+.+.--...+.+..+++.+++.+. ++++||..... . +.+++++++|+++||..|++.|+|.+.
T Consensus 73 ~~~ai~iG~l~~~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L~g~~~ 152 (266)
T PRK06427 73 RIDAVKIGMLASAEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLADDAVAALRERLLPLATLITPNLPEAEALTGLPI 152 (266)
T ss_pred CCCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhCcCeEEcCCHHHHHHHhCCCC
Confidence 4566766433346667788888888876 89999963321 1 123578999999999999999999765
Q ss_pred CCHHH-HHHHHHHHhh
Q 023130 267 DSYEQ-ISEAVVKCHK 281 (287)
Q Consensus 267 ~~~~~-~~~~~~~l~~ 281 (287)
.+.++ +.++++++.+
T Consensus 153 ~~~~~~~~~~a~~l~~ 168 (266)
T PRK06427 153 ADTEDEMKAAARALHA 168 (266)
T ss_pred CCcHHHHHHHHHHHHh
Confidence 55444 6667777654
No 60
>PRK07105 pyridoxamine kinase; Validated
Probab=97.82 E-value=6.8e-05 Score=66.19 Aligned_cols=82 Identities=20% Similarity=0.108 Sum_probs=56.0
Q ss_pred cccEEEEeCCCCHHHH---HHHHHHHHhCCCcEEEeCCCCCC----C--------CchhhccCCcEEecCHHHHHhhcCC
Q 023130 200 KAGIVLLQREIPDSVN---IQVAKAARSAGVPVIFDAGGMDA----P--------IPQELLNFIDILSPNESELGRLTGM 264 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~---~~~~~~a~~~g~~v~~D~~~~~~----~--------~~~~ll~~~dil~~Ne~E~~~l~g~ 264 (287)
..+.+.+.--...+.+ .++++.+++.++++++||..... . .+.++++++|+++||+.|++.|+|.
T Consensus 75 ~~~aik~G~l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~g~ 154 (284)
T PRK07105 75 KFDAIYSGYLGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLLDK 154 (284)
T ss_pred ccCEEEECcCCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHcCC
Confidence 5677776432234433 44444446668999999974321 1 1346889999999999999999997
Q ss_pred CCC----CHHHHHHHHHHHhh
Q 023130 265 PTD----SYEQISEAVVKCHK 281 (287)
Q Consensus 265 ~~~----~~~~~~~~~~~l~~ 281 (287)
+.. +.+++.++++++.+
T Consensus 155 ~~~~~~~~~~~~~~~a~~l~~ 175 (284)
T PRK07105 155 PYLEKSYSEEEIKQLLRKLAD 175 (284)
T ss_pred CcCcCCCCHHHHHHHHHHHHh
Confidence 532 46777777777765
No 61
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=97.82 E-value=7.8e-05 Score=70.11 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=60.8
Q ss_pred cEEEEeCCC-CHHHHHHHHHHHHhCCCcEEEeCCCCCC---C---------CchhhccCCcEEecCHHHHHhhcCCCCCC
Q 023130 202 GIVLLQREI-PDSVNIQVAKAARSAGVPVIFDAGGMDA---P---------IPQELLNFIDILSPNESELGRLTGMPTDS 268 (287)
Q Consensus 202 ~~v~~~g~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~---------~~~~ll~~~dil~~Ne~E~~~l~g~~~~~ 268 (287)
+.+.. |.+ +.+.+..+++.++++|+++++||..... . ..+.+++++|+++||+.|++.|+|.+..+
T Consensus 73 ~~ik~-G~l~~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~ 151 (448)
T PRK08573 73 DAAKT-GMLSNREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLREDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRS 151 (448)
T ss_pred CEEEE-CCcCCHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCCHHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCC
Confidence 44433 334 4677899999999999999999964311 1 12467799999999999999999987777
Q ss_pred HHHHHHHHHHHhh
Q 023130 269 YEQISEAVVKCHK 281 (287)
Q Consensus 269 ~~~~~~~~~~l~~ 281 (287)
.+++.+++++|.+
T Consensus 152 ~~d~~~aa~~L~~ 164 (448)
T PRK08573 152 VEDARKAAKYIVE 164 (448)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 62
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=97.78 E-value=7.4e-05 Score=66.00 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=60.5
Q ss_pred hccccEEEEeCCCCH----HHHHHHHHHHHhCC--CcEEEeCCCCC--------CCC----chhhccCCcEEecCHHHHH
Q 023130 198 VKKAGIVLLQREIPD----SVNIQVAKAARSAG--VPVIFDAGGMD--------API----PQELLNFIDILSPNESELG 259 (287)
Q Consensus 198 l~~a~~v~~~g~~~~----~~~~~~~~~a~~~g--~~v~~D~~~~~--------~~~----~~~ll~~~dil~~Ne~E~~ 259 (287)
+.+++++ +.|.++. +.+.++++.+++.+ +.+++||...+ ... .+.+++++|+++||+.|++
T Consensus 72 ~~~~d~v-~~G~l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~~~~~~~~~~~ll~~adii~pN~~Ea~ 150 (286)
T TIGR00687 72 LNQCDAV-LSGYLGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVAPDLLEVYREKAIPVADIITPNQFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeChhHHHHHHHhccccccEecCCHHHHH
Confidence 3478886 5666652 46777888887765 67889994211 111 1347789999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHhhh
Q 023130 260 RLTGMPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 260 ~l~g~~~~~~~~~~~~~~~l~~~ 282 (287)
.|+|.+..+.+++.++++++.++
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l~~~ 173 (286)
T TIGR00687 151 LLTGRKINTVEEALAAADALIAM 173 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHHHHh
Confidence 99998766777887778777653
No 63
>PRK05756 pyridoxamine kinase; Validated
Probab=97.76 E-value=0.00013 Score=64.52 Aligned_cols=83 Identities=20% Similarity=0.245 Sum_probs=59.9
Q ss_pred hccccEEEEeCCCCH----HHHHHHHHHHHhCC--CcEEEeCCCCCCC------------CchhhccCCcEEecCHHHHH
Q 023130 198 VKKAGIVLLQREIPD----SVNIQVAKAARSAG--VPVIFDAGGMDAP------------IPQELLNFIDILSPNESELG 259 (287)
Q Consensus 198 l~~a~~v~~~g~~~~----~~~~~~~~~a~~~g--~~v~~D~~~~~~~------------~~~~ll~~~dil~~Ne~E~~ 259 (287)
+...+++ +.|.++. +.+.++++.+++.+ +.+++||...+.. ..+.+++++|+++||+.|++
T Consensus 72 l~~~~~v-~~G~l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea~ 150 (286)
T PRK05756 72 LGECDAV-LSGYLGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFELE 150 (286)
T ss_pred cccCCEE-EECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHHH
Confidence 3467766 5666553 45677777777665 5688998744311 12348899999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHhh
Q 023130 260 RLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 260 ~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
.|+|.+..+.+++.++++++.+
T Consensus 151 ~L~g~~~~~~~~~~~~~~~l~~ 172 (286)
T PRK05756 151 WLSGRPVETLEDAVAAARALIA 172 (286)
T ss_pred HHhCCCcCCHHHHHHHHHHHHH
Confidence 9999876777888888877764
No 64
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=97.72 E-value=0.00014 Score=64.20 Aligned_cols=84 Identities=23% Similarity=0.133 Sum_probs=57.1
Q ss_pred ccccEEEEeCCCCHHH---HHHHHHHHHh--CCCcEEEeCCCCC--------CC---Cc-hhhccCCcEEecCHHHHHhh
Q 023130 199 KKAGIVLLQREIPDSV---NIQVAKAARS--AGVPVIFDAGGMD--------AP---IP-QELLNFIDILSPNESELGRL 261 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~---~~~~~~~a~~--~g~~v~~D~~~~~--------~~---~~-~~ll~~~dil~~Ne~E~~~l 261 (287)
.+.+.+++..-...+. +.++++..++ .+.++++||.... .+ .. +.+++++|+++||+.|++.|
T Consensus 87 ~~~d~i~~G~l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L 166 (281)
T PRK08176 87 RQLRAVTTGYMGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQHLLPLAQGLTPNIFELEIL 166 (281)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECccHHHHHHHHhHhhcCEeCCCHHHHHHH
Confidence 3678887743223333 3444444332 4788999997221 11 12 35889999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHhhh
Q 023130 262 TGMPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 262 ~g~~~~~~~~~~~~~~~l~~~ 282 (287)
+|.+..+.+++.++++++.++
T Consensus 167 ~g~~~~~~~~~~~~~~~l~~~ 187 (281)
T PRK08176 167 TGKPCRTLDSAIAAAKSLLSD 187 (281)
T ss_pred hCCCCCCHHHHHHHHHHHHhc
Confidence 997766778888888887653
No 65
>PRK12616 pyridoxal kinase; Reviewed
Probab=97.52 E-value=0.00036 Score=61.17 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=58.9
Q ss_pred ccEEEEeCCCCHHHHHHHHHHHHhCCC-cEEEeCCCCCC---C---------CchhhccCCcEEecCHHHHHhhcCC-CC
Q 023130 201 AGIVLLQREIPDSVNIQVAKAARSAGV-PVIFDAGGMDA---P---------IPQELLNFIDILSPNESELGRLTGM-PT 266 (287)
Q Consensus 201 a~~v~~~g~~~~~~~~~~~~~a~~~g~-~v~~D~~~~~~---~---------~~~~ll~~~dil~~Ne~E~~~l~g~-~~ 266 (287)
.+.+.+.--...+.+..+++.+++.+. ++++||..... . +.+.+++.+|+++||..|++.|+|. +.
T Consensus 75 ~~aikiG~l~s~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L~g~~~~ 154 (270)
T PRK12616 75 VDAMKTGMLPTVDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQLSGMGEI 154 (270)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHHcCCCCC
Confidence 566666433346777888888888764 69999975321 1 1234778999999999999999996 45
Q ss_pred CCHHHHHHHHHHHhh
Q 023130 267 DSYEQISEAVVKCHK 281 (287)
Q Consensus 267 ~~~~~~~~~~~~l~~ 281 (287)
.+.+++.++++++.+
T Consensus 155 ~~~~~~~~aa~~l~~ 169 (270)
T PRK12616 155 KTVEQMKEAAKKIHE 169 (270)
T ss_pred CCHHHHHHHHHHHHH
Confidence 677788888887765
No 66
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=97.49 E-value=0.00026 Score=61.21 Aligned_cols=83 Identities=27% Similarity=0.263 Sum_probs=56.6
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCC---CC---------CchhhccCCcEEecCHHHHHhhcCCCCC
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD---AP---------IPQELLNFIDILSPNESELGRLTGMPTD 267 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~---~~---------~~~~ll~~~dil~~Ne~E~~~l~g~~~~ 267 (287)
..+.+.+.--...+.+..+.+..++.+.++++||--.. .. ..+.+++.+|++.||..|++.|+|.+..
T Consensus 60 ~~~aikiG~l~~~~~v~~i~~~l~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~g~~i~ 139 (246)
T PF08543_consen 60 KFDAIKIGYLGSAEQVEIIADFLKKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLTGREIN 139 (246)
T ss_dssp C-SEEEE-S-SSHHHHHHHHHHHHHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHHTS--S
T ss_pred cccEEEEcccCCchhhhhHHHHHhccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHhCCCCC
Confidence 46777764333456677777777778889999995221 01 1234899999999999999999998888
Q ss_pred CHHHHHHHHHHHhhh
Q 023130 268 SYEQISEAVVKCHKM 282 (287)
Q Consensus 268 ~~~~~~~~~~~l~~~ 282 (287)
+.+++.+++++|+++
T Consensus 140 ~~~~~~~~~~~l~~~ 154 (246)
T PF08543_consen 140 SEEDIEEAAKALLAL 154 (246)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred ChHhHHHHHHHHHHh
Confidence 999999999998874
No 67
>PTZ00344 pyridoxal kinase; Provisional
Probab=97.47 E-value=0.00039 Score=61.80 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=53.9
Q ss_pred EEEEeCCCC-HHHHHH---HHHHHHhCC--CcEEEeCCCCCC----------CCchhhccCCcEEecCHHHHHhhcCCCC
Q 023130 203 IVLLQREIP-DSVNIQ---VAKAARSAG--VPVIFDAGGMDA----------PIPQELLNFIDILSPNESELGRLTGMPT 266 (287)
Q Consensus 203 ~v~~~g~~~-~~~~~~---~~~~a~~~g--~~v~~D~~~~~~----------~~~~~ll~~~dil~~Ne~E~~~l~g~~~ 266 (287)
.+++.|.++ .+.+.. +++.+++.+ +++++||...+. ..+.++++++|+++||+.|++.|+|.+.
T Consensus 79 ~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~~~~ll~~~dii~pN~~E~~~L~g~~~ 158 (296)
T PTZ00344 79 TYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDAYRELIPYADVITPNQFEASLLSGVEV 158 (296)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHHHHHHhhhCCEEeCCHHHHHHHhCCCC
Confidence 455667775 343344 444445554 579999764211 1134678899999999999999999766
Q ss_pred CCHHHHHHHHHHHhhh
Q 023130 267 DSYEQISEAVVKCHKM 282 (287)
Q Consensus 267 ~~~~~~~~~~~~l~~~ 282 (287)
.+.+++.++++++.++
T Consensus 159 ~~~~~~~~~~~~l~~~ 174 (296)
T PTZ00344 159 KDLSDALEAIDWFHEQ 174 (296)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6777777777777643
No 68
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.30 E-value=0.0043 Score=57.71 Aligned_cols=178 Identities=16% Similarity=0.111 Sum_probs=100.4
Q ss_pred ceeecCchHHHHHHHHHHcCCCcEE-EEeecCCchHHHHHHHHHhCCCCCCc----------------------eEEccC
Q 023130 99 SQTLAGGKGANQAACGAKLSHPTYF-VGQVGEDANGKLITDALSGCGVRLDY----------------------MNVVKD 155 (287)
Q Consensus 99 ~~~~~GG~a~N~A~~la~LG~~~~l-ig~vG~D~~G~~i~~~L~~~gVd~~~----------------------v~~~~~ 155 (287)
.....||.+..+|..++++|.++.+ .+.. .++...+.|...+|-.-. +...=
T Consensus 86 ~~~rmGGnAgimAn~la~lg~~~Vi~~~~~----lsk~q~~lf~~~~i~~p~~~~~~~l~~~~~~~a~~~~~d~IH~If- 160 (453)
T PRK14039 86 SEIRMGGNAGIMANVLSELGASRVVPNVAV----PSKTQLSLFSKKAVYFPGMPLQASETDGEKVGASSSDQEPIHFVF- 160 (453)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEcCCC----CCHHHHHhcCCCCEEeccccccccccCccccccccCCCCCceEEE-
Confidence 4688999999999999999998654 3321 234444555222222111 11111
Q ss_pred CCCCCceEEE-----EEcCCCCeeEEEeCCCCCCCCCcccCchhHhhh----ccccEEEEeCCCC-----------HHHH
Q 023130 156 GGVPTGHAVV-----MLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVV----KKAGIVLLQREIP-----------DSVN 215 (287)
Q Consensus 156 ~~~~T~~~~v-----~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l----~~a~~v~~~g~~~-----------~~~~ 215 (287)
+.+.|..+. ++.+.-+|-++.+.-.+..+. +.+++.+.+ .++|.++++|... .+.+
T Consensus 161 -Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~N~~l~---i~e~f~~~l~e~~~~~D~avlSG~q~l~d~y~dg~~~~e~l 236 (453)
T PRK14039 161 -DFREGETFSLYGTRIRAPRENRFIATFDHLNFRLF---INPAFEQYALEHAGEMDGALISGFHLLLETYPDGSTYREKL 236 (453)
T ss_pred -EeCCCCEEecCCccEecCCCCeEEEecCCCCccce---ecHHHHHHHHhhccCCCEEEEechhhhhhhcCCcccHHHHH
Confidence 123333331 222333343333333332221 222332333 3789999988321 1222
Q ss_pred ---HHHHHHH--HhCCCcEEEeCCCCCC-----CCchhhccCCcEEecCHHHHHhhcCC---CC-----CCHHHHHHHHH
Q 023130 216 ---IQVAKAA--RSAGVPVIFDAGGMDA-----PIPQELLNFIDILSPNESELGRLTGM---PT-----DSYEQISEAVV 277 (287)
Q Consensus 216 ---~~~~~~a--~~~g~~v~~D~~~~~~-----~~~~~ll~~~dil~~Ne~E~~~l~g~---~~-----~~~~~~~~~~~ 277 (287)
.+.++.. +..++++-+...+... .....+++++|.+-+||+|+..+... +. .+++++.+++.
T Consensus 237 ~~~~~~i~~l~~~~~~i~iH~E~As~~~~~i~~~v~~~Ilp~VDSlGmNEqELa~l~~~~g~~~~~i~~~~~~~v~ea~~ 316 (453)
T PRK14039 237 EDSLAQLKWWKSKNEKLRIHAELGHFASKEIANSVFLILAGIVDSIGMNEDELAMLANLHGIPAEGILEMNAEAIGEAAC 316 (453)
T ss_pred HHHHHHHHHHHhcCCCceEEEEecCcccHHHHHHHHHHhhcccccccCCHHHHHHHHHHcccchhhHhhcCHHHHHHHHH
Confidence 2333333 2346788888876532 23457889999999999999887654 21 34778889999
Q ss_pred HHhhhccc
Q 023130 278 KCHKMVSV 285 (287)
Q Consensus 278 ~l~~~v~v 285 (287)
+|.+...+
T Consensus 317 ~l~~~~~l 324 (453)
T PRK14039 317 QLASESGL 324 (453)
T ss_pred HHHHHcCC
Confidence 98887643
No 69
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=97.30 E-value=0.00093 Score=57.64 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=59.8
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHhCC-CcEEEeCCCCC---C---------CCchhhccCCcEEecCHHHHHhhcCC-CCC
Q 023130 202 GIVLLQREIPDSVNIQVAKAARSAG-VPVIFDAGGMD---A---------PIPQELLNFIDILSPNESELGRLTGM-PTD 267 (287)
Q Consensus 202 ~~v~~~g~~~~~~~~~~~~~a~~~g-~~v~~D~~~~~---~---------~~~~~ll~~~dil~~Ne~E~~~l~g~-~~~ 267 (287)
+.+=+.--...+.+..+++..++++ .++++||--.. . .+.++++++++++.||-.|++.|+|. +..
T Consensus 74 ~avKtGML~~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L~g~~~i~ 153 (263)
T COG0351 74 DAVKTGMLGSAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEALSGLPKIK 153 (263)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHHcCCCccC
Confidence 3443332234677888888889998 78999994211 1 12358999999999999999999994 788
Q ss_pred CHHHHHHHHHHHhh
Q 023130 268 SYEQISEAVVKCHK 281 (287)
Q Consensus 268 ~~~~~~~~~~~l~~ 281 (287)
+.+++.++++.+.+
T Consensus 154 ~~~d~~~a~~~i~~ 167 (263)
T COG0351 154 TEEDMKEAAKLLHE 167 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 89999988777654
No 70
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=97.28 E-value=0.0015 Score=56.76 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=61.5
Q ss_pred hhccccEEEEeCCCCH----HHHHHHHHHHHhC--CCcEEEeCCCCCC-------C----CchhhccCCcEEecCHHHHH
Q 023130 197 VVKKAGIVLLQREIPD----SVNIQVAKAARSA--GVPVIFDAGGMDA-------P----IPQELLNFIDILSPNESELG 259 (287)
Q Consensus 197 ~l~~a~~v~~~g~~~~----~~~~~~~~~a~~~--g~~v~~D~~~~~~-------~----~~~~ll~~~dil~~Ne~E~~ 259 (287)
.+..+|.++ +|++.. ..+..+++..|+. ...+++||---+. + ...++++.+|++.||..|++
T Consensus 70 ~~~~~davl-tGYlgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fELe 148 (281)
T COG2240 70 KLGECDAVL-TGYLGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFELE 148 (281)
T ss_pred cccccCEEE-EccCCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHHHH
Confidence 455677775 456542 3355666666665 4458889852211 1 12478999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHHHHhh
Q 023130 260 RLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 260 ~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
.|+|.+..+.+++.++++.|.+
T Consensus 149 ~Ltg~~~~~~~da~~aa~~L~~ 170 (281)
T COG2240 149 ILTGKPLNTLDDAVKAARKLGA 170 (281)
T ss_pred HHhCCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999994
No 71
>PLN02978 pyridoxal kinase
Probab=97.26 E-value=0.0012 Score=59.12 Aligned_cols=81 Identities=23% Similarity=0.224 Sum_probs=56.0
Q ss_pred ccEEEEeCCCC-H---HHHHHHHHHHHh--CCCcEEEeCCCCCC--CC--------c-hhhccCCcEEecCHHHHHhhcC
Q 023130 201 AGIVLLQREIP-D---SVNIQVAKAARS--AGVPVIFDAGGMDA--PI--------P-QELLNFIDILSPNESELGRLTG 263 (287)
Q Consensus 201 a~~v~~~g~~~-~---~~~~~~~~~a~~--~g~~v~~D~~~~~~--~~--------~-~~ll~~~dil~~Ne~E~~~l~g 263 (287)
.+.+.+ |.+. . +.+.++++.+++ .++++++||..... .+ . +.+++++|+++||+.|++.|+|
T Consensus 87 ~~ai~~-G~l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~~~~~~~~~~~ll~~adiitPN~~Ea~~L~g 165 (308)
T PLN02978 87 YTHLLT-GYIGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVPPELVPVYREKVVPLATMLTPNQFEAEQLTG 165 (308)
T ss_pred cCEEEe-cccCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCChhHHHHHHHHHHhhCCeeccCHHHHHHHhC
Confidence 455544 4442 2 446667777776 45779999984321 11 2 3588999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhhh
Q 023130 264 MPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~ 282 (287)
.+..+.+++.++++++.++
T Consensus 166 ~~~~~~~~~~~a~~~l~~~ 184 (308)
T PLN02978 166 IRIVTEEDAREACAILHAA 184 (308)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 7666677777777777653
No 72
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=97.02 E-value=0.0019 Score=61.79 Aligned_cols=92 Identities=15% Similarity=0.209 Sum_probs=59.6
Q ss_pred cccCchhHhhhccccEEEE-eCCCC-HHHHHHHHHHHHhCCCcEEEeCCCCC---CCC---------c----hhhccCCc
Q 023130 188 EKFGDEDLEVVKKAGIVLL-QREIP-DSVNIQVAKAARSAGVPVIFDAGGMD---API---------P----QELLNFID 249 (287)
Q Consensus 188 ~~l~~~~~~~l~~a~~v~~-~g~~~-~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~---------~----~~ll~~~d 249 (287)
+.+.......+++.++..+ .|.++ .+.+..+++.++ +.++++||.... ..+ . +.+++.+|
T Consensus 285 ~~~~~ql~~l~~d~~~~~Ik~G~l~s~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~ad 362 (504)
T PTZ00347 285 DFFAAQIDSVMSDFNISVVKLGLVPTARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMAT 362 (504)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcce
Confidence 3343333344555555443 45554 566666666664 678999986421 011 1 25778999
Q ss_pred EEecCHHHHHhhcCCC-CCCHHHHHHHHHHHhh
Q 023130 250 ILSPNESELGRLTGMP-TDSYEQISEAVVKCHK 281 (287)
Q Consensus 250 il~~Ne~E~~~l~g~~-~~~~~~~~~~~~~l~~ 281 (287)
+++||..|++.|+|.+ ..+.+++.++++++.+
T Consensus 363 vitPN~~Ea~~L~g~~~~~~~~~~~~aa~~l~~ 395 (504)
T PTZ00347 363 IITPNIPEAERILGRKEITGVYEARAAAQALAQ 395 (504)
T ss_pred EEeCCHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999963 4567777777777765
No 73
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=96.96 E-value=0.023 Score=52.80 Aligned_cols=179 Identities=8% Similarity=0.062 Sum_probs=97.9
Q ss_pred eecCchHHHHHHHHHHcCCCc-EEEEeecCCchHHHHHHHHHhC-CCCCC-----c-eEE------ccCCCCCCceEEEE
Q 023130 101 TLAGGKGANQAACGAKLSHPT-YFVGQVGEDANGKLITDALSGC-GVRLD-----Y-MNV------VKDGGVPTGHAVVM 166 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG~~~-~lig~vG~D~~G~~i~~~L~~~-gVd~~-----~-v~~------~~~~~~~T~~~~v~ 166 (287)
...||.+..+|..++++|.++ .+.+.. .++...+.|.+. +|-.- - +.. .+ +.++-.-+++
T Consensus 86 ~rmGGqAgimAn~la~lg~~~vI~~~~~----ls~~qa~lf~~~~ni~~p~~e~g~l~l~~~~e~~~e--~d~~~IH~I~ 159 (446)
T TIGR02045 86 ERMGGQAGIISNLLGRLGLKKVIAYTPF----LSKRQAEMFVATGNILYPVVENGKLVLKPPGEAYRE--GDPSKVNRIF 159 (446)
T ss_pred eeeCCHHHHHHHHHHhcCCceEEEeCCC----CCHHHHHHhCCcCceeeccccCCceeeccchhccCC--CCCCceEEEE
Confidence 579999999999999999974 333331 234444555443 11110 0 000 01 1122233333
Q ss_pred EcCCC---------------CeeEEEeCCCCCCCC-CcccCchhHhhhccccEEEEeCCC------C--------HHHHH
Q 023130 167 LQSDG---------------QNSIIIVGGTNMSCW-PEKFGDEDLEVVKKAGIVLLQREI------P--------DSVNI 216 (287)
Q Consensus 167 i~~~G---------------er~~~~~~ga~~~~~-~~~l~~~~~~~l~~a~~v~~~g~~------~--------~~~~~ 216 (287)
--+.| +|-++.++-.+..+. .+.+.+-..+....+|.++++|.. + .+...
T Consensus 160 Ey~~G~~~~lg~~~~~aPRaNRfI~s~D~~n~~l~~~~~l~~~~~~i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~ 239 (446)
T TIGR02045 160 EFRKGTNFKLGGETIKVPRSGRFIVSSRPESLRIETKDQLRKFLPEIGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAK 239 (446)
T ss_pred EeCCCCeeecCCceEeccCCCeEEEecCCccccceecHHHHHhhhhhhhcccEEEEEchhhhhhhccCCccHhHHHHHHH
Confidence 33333 333333332222111 011211112333568889998832 1 12234
Q ss_pred HHHHHHH-hCCCcEEEeCCCCCC-----CCchhhccCCcEEecCHHHHHhhc---CC--------CCCCHHHHHHHHHHH
Q 023130 217 QVAKAAR-SAGVPVIFDAGGMDA-----PIPQELLNFIDILSPNESELGRLT---GM--------PTDSYEQISEAVVKC 279 (287)
Q Consensus 217 ~~~~~a~-~~g~~v~~D~~~~~~-----~~~~~ll~~~dil~~Ne~E~~~l~---g~--------~~~~~~~~~~~~~~l 279 (287)
+.++..+ ..++++-|...+... .....+++++|-+-+||+|+..+. |. ..++++++.+++.++
T Consensus 240 ~~i~~L~~~~~i~iH~E~As~~~~~l~~~i~~~ilp~vDSlGMNE~ELa~ll~~lg~~~l~~~i~~~~~i~~vi~a~~~l 319 (446)
T TIGR02045 240 EDIELLKKNKDLKIHVEFASIQNREIRKKVVTNIFPHVDSVGMDEAEIANVLSVLGYDELSDRIFRYNRIEDLILGAKIL 319 (446)
T ss_pred HHHHHHhhCCCCeEEEEecccccHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCCchhhhhhccccHHHHHHHHHHH
Confidence 4444443 367888888876532 234578899999999999998875 32 123578899999998
Q ss_pred hhhccc
Q 023130 280 HKMVSV 285 (287)
Q Consensus 280 ~~~v~v 285 (287)
.++..+
T Consensus 320 ~~~~~l 325 (446)
T TIGR02045 320 LDELNL 325 (446)
T ss_pred HHHcCC
Confidence 887543
No 74
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=96.95 E-value=0.0052 Score=53.19 Aligned_cols=91 Identities=25% Similarity=0.367 Sum_probs=61.8
Q ss_pred chhHhhhccccEEEEeCC-CCH---HHHHHHHHHHHhCCCcEEEeCCCCCCC-----Cchhhcc--CCcEEecCHHHHHh
Q 023130 192 DEDLEVVKKAGIVLLQRE-IPD---SVNIQVAKAARSAGVPVIFDAGGMDAP-----IPQELLN--FIDILSPNESELGR 260 (287)
Q Consensus 192 ~~~~~~l~~a~~v~~~g~-~~~---~~~~~~~~~a~~~g~~v~~D~~~~~~~-----~~~~ll~--~~dil~~Ne~E~~~ 260 (287)
++..+.+..++.+++.-. +.. +.+..+++.++++++|+++||...... ...++++ +++++.||..|++.
T Consensus 41 ~e~~~~~~~~~al~ik~G~l~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~s~~r~~~~~~Ll~~~~~~vITpN~~E~~~ 120 (249)
T TIGR00694 41 EEVAELAKIAGALVINIGTLDKESIEAMIAAGKSANELGVPVVLDPVGVGATKFRTETALELLSEGRFAAIRGNAGEIAS 120 (249)
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEEcccccccchhHHHHHHHHHhhcCCceeCCCHHHHHH
Confidence 345566777888887543 332 345566677788899999999754211 1234565 47999999999999
Q ss_pred hcCCCC--------CCHHHHHHHHHHHhhh
Q 023130 261 LTGMPT--------DSYEQISEAVVKCHKM 282 (287)
Q Consensus 261 l~g~~~--------~~~~~~~~~~~~l~~~ 282 (287)
|+|... +..++..++++++.++
T Consensus 121 L~g~~~~~~gvd~~~~~~d~~~~a~~la~~ 150 (249)
T TIGR00694 121 LAGETGLMKGVDSGEGAADAIRAAQQAAQK 150 (249)
T ss_pred HhCCCCCCCCcCCccchHHHHHHHHHHHHH
Confidence 998531 1355777778877665
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=96.86 E-value=0.008 Score=52.47 Aligned_cols=90 Identities=28% Similarity=0.356 Sum_probs=59.1
Q ss_pred hhHhhhccccEEEEeCCCC-HH---HHHHHHHHHHhCCCcEEEeCCCCCC-CC----chhhcc--CCcEEecCHHHHHhh
Q 023130 193 EDLEVVKKAGIVLLQREIP-DS---VNIQVAKAARSAGVPVIFDAGGMDA-PI----PQELLN--FIDILSPNESELGRL 261 (287)
Q Consensus 193 ~~~~~l~~a~~v~~~g~~~-~~---~~~~~~~~a~~~g~~v~~D~~~~~~-~~----~~~ll~--~~dil~~Ne~E~~~l 261 (287)
+..+.+..++.+++.-... .+ .+..+++.++++++|+++||..... .. ...+++ +.++++||..|+..|
T Consensus 47 e~~~~~~~~~alvi~~G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~~~~~~~~~~ll~~~~~~vItPN~~E~~~L 126 (263)
T PRK09355 47 EAEEMAKIAGALVINIGTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGATSYRTEFALELLAEVKPAVIRGNASEIAAL 126 (263)
T ss_pred HHHHHHHhcCceEEeCCCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcchhhHHHHHHHHHhcCCcEecCCHHHHHHH
Confidence 4446677788888854333 32 2455566678889999999975421 11 123443 689999999999999
Q ss_pred cCCCC--------CCHHHHHHHHHHHhhh
Q 023130 262 TGMPT--------DSYEQISEAVVKCHKM 282 (287)
Q Consensus 262 ~g~~~--------~~~~~~~~~~~~l~~~ 282 (287)
+|.+. .+.++..+.++++.++
T Consensus 127 ~g~~~~~~~vd~~~~~~~~~~~a~~la~~ 155 (263)
T PRK09355 127 AGEAAETKGVDSTDGSADAVEIAKAAAKK 155 (263)
T ss_pred hCCCcccCCcCCCCCHHHHHHHHHHHHHH
Confidence 99632 1244666677776554
No 76
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=96.80 E-value=0.008 Score=57.48 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=57.5
Q ss_pred ccEEEEeCCCCHHHHHHHHHHHHhCCCc-EEEeCCCCCC---C---------CchhhccCCcEEecCHHHHHhhcCCC-C
Q 023130 201 AGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGMDA---P---------IPQELLNFIDILSPNESELGRLTGMP-T 266 (287)
Q Consensus 201 a~~v~~~g~~~~~~~~~~~~~a~~~g~~-v~~D~~~~~~---~---------~~~~ll~~~dil~~Ne~E~~~l~g~~-~ 266 (287)
.+.+.+..-...+.+..+++.+++.+.+ +++||..... . +.+.+++++|+++||..|++.|+|.. .
T Consensus 79 ~~aik~G~l~~~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~~~~~~~l~~~Ll~~adiitPN~~Ea~~L~g~~~~ 158 (502)
T PLN02898 79 VDVVKTGMLPSAEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAGPSILSALREELLPLATIVTPNVKEASALLGGDPL 158 (502)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHhCCCCCEEEccccccCCCCccCCHHHHHHHHHhhhccCeEEcCCHHHHHHHhCCCCC
Confidence 4556554333567788888888888875 9999953211 1 12367889999999999999999843 3
Q ss_pred CCHHHHHHHHHHHhh
Q 023130 267 DSYEQISEAVVKCHK 281 (287)
Q Consensus 267 ~~~~~~~~~~~~l~~ 281 (287)
.+.+++.++++++.+
T Consensus 159 ~~~~~~~~~a~~l~~ 173 (502)
T PLN02898 159 ETVADMRSAAKELHK 173 (502)
T ss_pred CCHHHHHHHHHHHHh
Confidence 466777777777764
No 77
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=96.65 E-value=0.02 Score=53.51 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=96.9
Q ss_pred eeecCchHHHHHHHHHHcCCCc--EEEEeecCCchHHHHHHHHHh-CCCCCC------ceEEccC----CCCCCceEEEE
Q 023130 100 QTLAGGKGANQAACGAKLSHPT--YFVGQVGEDANGKLITDALSG-CGVRLD------YMNVVKD----GGVPTGHAVVM 166 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~LG~~~--~lig~vG~D~~G~~i~~~L~~-~gVd~~------~v~~~~~----~~~~T~~~~v~ 166 (287)
....||.+..+|..++++|.+. .+.+.++ +...+.|.. .+|-.- .+...+. ++.++-.-+++
T Consensus 98 ~~rmGGqAgimAn~la~lg~~~vV~~~p~ls-----k~qa~lf~~~~~i~~P~~e~g~l~l~~p~e~~~~~d~~~IH~I~ 172 (463)
T PRK03979 98 EERMGGQAGIISNLLAILDLKKVIAYTPWLS-----KKQAEMFVDSDNLLYPVVENGKLVLKKPREAYKPNDPLKINRIF 172 (463)
T ss_pred eEEeCChHHHHHHHHHhcCCceEEEeCCCCC-----HHHHHHhCCCCCeeeccccCCceeeccchhhccCCCCcceEEEE
Confidence 4689999999999999999874 3344444 444455522 121111 0010000 01122233333
Q ss_pred EcCCCC---------------eeEEEeCCCCCCCCCcccCchhHhhh----ccccEEEEeCCC------CH--------H
Q 023130 167 LQSDGQ---------------NSIIIVGGTNMSCWPEKFGDEDLEVV----KKAGIVLLQREI------PD--------S 213 (287)
Q Consensus 167 i~~~Ge---------------r~~~~~~ga~~~~~~~~l~~~~~~~l----~~a~~v~~~g~~------~~--------~ 213 (287)
--+.|. |-++.++-.+..+ ...+++.+.+ .++|.++++|.. +. +
T Consensus 173 Ey~~G~~~~l~~~~~~aPRaNRfI~s~D~~n~~l---~~~eef~~~L~ei~~~~D~avlSG~q~i~~~y~dg~~~~~~l~ 249 (463)
T PRK03979 173 EFKKGLEFKLGGEKIIVPRSNRFIVSSRPEWLRI---EIKDELKEFLPEIGKMVDGAILSGYQGIKEEYSDGKTAEYYLK 249 (463)
T ss_pred EeCCCCEEEecCccEecCCCCeEEEecCCCCccc---eecHHHHHHHHhhccCCCEEEEechhhhhccccccccHHHHHH
Confidence 333333 3333222222221 1222333334 449999998832 11 1
Q ss_pred HHHHHHHHH--HhCCCcEEEeCCCCCC-----CCchhhccCCcEEecCHHHHHhhc---CC--------CCCCHHHHHHH
Q 023130 214 VNIQVAKAA--RSAGVPVIFDAGGMDA-----PIPQELLNFIDILSPNESELGRLT---GM--------PTDSYEQISEA 275 (287)
Q Consensus 214 ~~~~~~~~a--~~~g~~v~~D~~~~~~-----~~~~~ll~~~dil~~Ne~E~~~l~---g~--------~~~~~~~~~~~ 275 (287)
.+.+.++.. +..++++-|...+... .....+++++|-+-+||+|+..+. |. ..++++++.++
T Consensus 250 r~~~~i~~L~~~~~~i~iH~E~As~~~~~ir~~i~~~ilp~vDSlGmNE~ELa~l~~~lg~~~l~~~i~~~~~i~~v~~a 329 (463)
T PRK03979 250 RAKEDIKLLKKKNKDIKIHVEFASIQNREIRKKIITYILPHVDSVGMDETEIANILNVLGYEELSERILKESRIEDVIEG 329 (463)
T ss_pred HHHHHHHHHhhCCCCceEEEEeccccCHHHHHHHHHhhccccccccCCHHHHHHHHHHhcCcchhhhhhccccHHHHHHH
Confidence 123333333 2347888888876532 234578899999999999998654 32 12347889999
Q ss_pred HHHHhhhccc
Q 023130 276 VVKCHKMVSV 285 (287)
Q Consensus 276 ~~~l~~~v~v 285 (287)
+.+|.++..+
T Consensus 330 ~~~L~~~~~l 339 (463)
T PRK03979 330 AKILLDELNL 339 (463)
T ss_pred HHHHHHHcCC
Confidence 9999887543
No 78
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=96.44 E-value=0.012 Score=50.60 Aligned_cols=91 Identities=27% Similarity=0.351 Sum_probs=59.5
Q ss_pred chhHhhhccccEEEEeC-CCCH---HHHHHHHHHHHhCCCcEEEeCCCCC-----CCCchhhc--cCCcEEecCHHHHHh
Q 023130 192 DEDLEVVKKAGIVLLQR-EIPD---SVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELL--NFIDILSPNESELGR 260 (287)
Q Consensus 192 ~~~~~~l~~a~~v~~~g-~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll--~~~dil~~Ne~E~~~ 260 (287)
++..+..+.++.+++.- .+.. +.+..+++.|++.++|++|||-+.- .+...+++ .+.++++.|..|...
T Consensus 41 ~E~~e~~~~a~al~iNiGTl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGas~~R~~~~~~LL~~~~~~vIrGN~sEI~a 120 (246)
T PF02110_consen 41 EEVEEFASIADALVINIGTLTDERIEAMKKAAKAANELGIPVVLDPVGVGASKFRTEFALELLNNYKPTVIRGNASEIAA 120 (246)
T ss_dssp TTHHHHHHCTSEEEEESTTSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTTBHHHHHHHHHHHCHS--SEEEEEHHHHHH
T ss_pred HHHHHHHHHcCEEEEECCCCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCCcHHHHHHHHHHHHhCCCcEEEeCHHHHHH
Confidence 34456667788888864 3443 5678888999999999999997653 12345666 578999999999999
Q ss_pred hcCCCCC--------CHHHHHHHHHHHhhh
Q 023130 261 LTGMPTD--------SYEQISEAVVKCHKM 282 (287)
Q Consensus 261 l~g~~~~--------~~~~~~~~~~~l~~~ 282 (287)
|.|.... +.++..+.++++.++
T Consensus 121 Lag~~~~~kGVDs~~~~~~~~~~a~~lA~k 150 (246)
T PF02110_consen 121 LAGEDSKAKGVDSGDSDEDAIEAAKQLAQK 150 (246)
T ss_dssp HHTCCCCSCSSSSSCGSHHHHHHHHHHHHH
T ss_pred HhCcCCCCCCcCcCCcchHHHHHHHHHHHh
Confidence 9886421 123356666666554
No 79
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=96.41 E-value=0.012 Score=58.95 Aligned_cols=82 Identities=20% Similarity=0.142 Sum_probs=58.2
Q ss_pred ccEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEeCCCCCC-----------CCchhhccCCcEEecCHHHHHhhcCCC-CC
Q 023130 201 AGIVLLQREIPDSVNIQVAKAARSA-GVPVIFDAGGMDA-----------PIPQELLNFIDILSPNESELGRLTGMP-TD 267 (287)
Q Consensus 201 a~~v~~~g~~~~~~~~~~~~~a~~~-g~~v~~D~~~~~~-----------~~~~~ll~~~dil~~Ne~E~~~l~g~~-~~ 267 (287)
.+.+-+.--...+.+..+++.+++. +.+|++||..... +.+.++++.+|+++||..|++.|+|.. ..
T Consensus 311 ~~aiKiGmL~s~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~~~~~~~~l~~Llp~adlItPN~~Ea~~L~g~~~~~ 390 (755)
T PRK09517 311 VDAVKLGMLGSADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLLDADATEALRRLAVHVDVVTPNIPELAVLCGEAPAI 390 (755)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhCCCCCEEEecccccCCCCCCCCHHHHHHHHHHhCcccCccCCHHHHHHHhCCCCCC
Confidence 4555553323456777888888875 5779999964211 113468899999999999999999953 35
Q ss_pred CHHHHHHHHHHHhhh
Q 023130 268 SYEQISEAVVKCHKM 282 (287)
Q Consensus 268 ~~~~~~~~~~~l~~~ 282 (287)
+.+++.++++++.+.
T Consensus 391 ~~~d~~~aa~~L~~~ 405 (755)
T PRK09517 391 TMDEAIAQARGFART 405 (755)
T ss_pred CHHHHHHHHHHHHHh
Confidence 677888888887653
No 80
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=96.39 E-value=0.05 Score=50.71 Aligned_cols=182 Identities=17% Similarity=0.134 Sum_probs=97.5
Q ss_pred eeecCchHHHHHHHHHH-cCCCcEEEEeecCCchHHHHHHHHHhCCCCCCce-----E-EccC---CCCCCceEEEEEcC
Q 023130 100 QTLAGGKGANQAACGAK-LSHPTYFVGQVGEDANGKLITDALSGCGVRLDYM-----N-VVKD---GGVPTGHAVVMLQS 169 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~-LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v-----~-~~~~---~~~~T~~~~v~i~~ 169 (287)
....||.+..+|..++. .|.+| ++.++.. .+.-.+.+...+|-.-.+ . ..+. .+.+.-.-+++--+
T Consensus 106 ~~rmGGnAgimAn~la~~~g~~V--ia~~~~l--sk~qa~lf~~~~I~~p~~~~~~l~l~~p~e~~~~~~d~IH~I~Ey~ 181 (453)
T PRK14038 106 ELRMGGQVGIMANLLGGVYGVPV--IAHVPQL--SKLQASLFLDGPIYVPTFEGGELKLVHPREFVGDEENCIHYIYEFP 181 (453)
T ss_pred eEEeCChHHHHHHHHHhhcCCce--EEECCCc--chhhHhhccCCCEEeccccCCcceeccchhcccCCCCccEEEEEeC
Confidence 57899999999999985 55665 6666642 222222232222211100 0 0000 00012222222222
Q ss_pred CC-----------CeeEEEeCCCCCCCC-CcccCchhHhhhccccEEEEeCCCC------HH---HHHHHHHHHHhCCCc
Q 023130 170 DG-----------QNSIIIVGGTNMSCW-PEKFGDEDLEVVKKAGIVLLQREIP------DS---VNIQVAKAARSAGVP 228 (287)
Q Consensus 170 ~G-----------er~~~~~~ga~~~~~-~~~l~~~~~~~l~~a~~v~~~g~~~------~~---~~~~~~~~a~~~g~~ 228 (287)
.| +|-++.+...+..+. .+++.+...+...+.|.++++|... .+ .+.+.++..++.+++
T Consensus 182 ~G~~~~~~~aPRaNRfI~s~D~~N~~l~~~eef~~~l~ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~ 261 (453)
T PRK14038 182 RGFRVFDFEAPRENRFIGAADDYNPNLYIRPEFRERFEEIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIP 261 (453)
T ss_pred CCCEEeeeEcCCCceEEEecCCCCcceeecHHHHHHHHhhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCce
Confidence 33 343333333333221 1223222234456799999998421 12 233334444456788
Q ss_pred EEEeCCCCCCC----CchhhccCCcEEecCHHHHHhhcC---C--------CCC--CHHHHHHHHHHHhhhccc
Q 023130 229 VIFDAGGMDAP----IPQELLNFIDILSPNESELGRLTG---M--------PTD--SYEQISEAVVKCHKMVSV 285 (287)
Q Consensus 229 v~~D~~~~~~~----~~~~ll~~~dil~~Ne~E~~~l~g---~--------~~~--~~~~~~~~~~~l~~~v~v 285 (287)
+-+........ .+..+++.+|-+-+||+|+..+.. . +.+ +++++.+++++|.+...+
T Consensus 262 iH~EfAs~~d~~~r~~i~~ilp~vDSlGmNE~ELa~ll~~lg~~~l~~~i~~~~~~~~~~v~e~~~~L~~~~gl 335 (453)
T PRK14038 262 AHLEFAFTPDETVREEILGLLGKFYSVGLNEVELASIMEVMGEKTLAEKLLAKDPVDPIAVTEAMLKLAEKTGV 335 (453)
T ss_pred EEEEeeccchHHHHHHHHhhCccccccccCHHHHHHHHHHhccchhhhhhhhcCccCHHHHHHHHHHHHHHcCC
Confidence 88888754211 123588999999999999987754 2 112 688999999999887653
No 81
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=96.23 E-value=0.027 Score=54.24 Aligned_cols=80 Identities=20% Similarity=0.203 Sum_probs=54.0
Q ss_pred ccEEEEeCCC-CHHHHHHHHHHHHhC-CCcEEEeCCCCC---CC--------CchhhccCCcEEecCHHHHHhhcCCCC-
Q 023130 201 AGIVLLQREI-PDSVNIQVAKAARSA-GVPVIFDAGGMD---AP--------IPQELLNFIDILSPNESELGRLTGMPT- 266 (287)
Q Consensus 201 a~~v~~~g~~-~~~~~~~~~~~a~~~-g~~v~~D~~~~~---~~--------~~~~ll~~~dil~~Ne~E~~~l~g~~~- 266 (287)
.+.+.+ |.+ ..+.+..+.+..++. +.+|++||.... .. .+.++++++|+++||..|++.|+|.+.
T Consensus 99 ~~aiki-G~l~s~~~i~~v~~~l~~~~~~~vVlDPv~~~~~G~~l~~~~~~~~~~~Ll~~advItPN~~Ea~~Ltg~~~~ 177 (530)
T PRK14713 99 VDAVKI-GMLGDAEVIDAVRTWLAEHRPPVVVLDPVMVATSGDRLLEEDAEAALRELVPRADLITPNLPELAVLLGEPPA 177 (530)
T ss_pred CCEEEE-CCcCCHHHHHHHHHHHHhCCCCCEEECCcccCCCCCCCCCHHHHHHHHHHhhhhheecCChHHHHHHhCCCCC
Confidence 456665 444 345455555555544 335899996431 11 124689999999999999999999754
Q ss_pred CCHHHHHHHHHHHhh
Q 023130 267 DSYEQISEAVVKCHK 281 (287)
Q Consensus 267 ~~~~~~~~~~~~l~~ 281 (287)
.+.+++.++++++.+
T Consensus 178 ~~~~d~~~aa~~L~~ 192 (530)
T PRK14713 178 TTWEEALAQARRLAA 192 (530)
T ss_pred CCHHHHHHHHHHHHH
Confidence 367788778877764
No 82
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=96.17 E-value=0.014 Score=50.21 Aligned_cols=82 Identities=26% Similarity=0.325 Sum_probs=56.9
Q ss_pred cccEEEEeCCCCH----HHHHHHHHHHHhC--CCcEEEeCCCCC-------CCC----chhhccCCcEEecCHHHHHhhc
Q 023130 200 KAGIVLLQREIPD----SVNIQVAKAARSA--GVPVIFDAGGMD-------API----PQELLNFIDILSPNESELGRLT 262 (287)
Q Consensus 200 ~a~~v~~~g~~~~----~~~~~~~~~a~~~--g~~v~~D~~~~~-------~~~----~~~ll~~~dil~~Ne~E~~~l~ 262 (287)
..+.+ ++|..+. ..+..+.+..|+. +..-++||---+ ++. .+.+.+.+|++.||.-|++.|+
T Consensus 81 ~Y~~v-LTGY~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~eelipvYr~~i~~ladiiTPNqFE~EiLt 159 (308)
T KOG2599|consen 81 KYDAV-LTGYLPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVPEELIPVYRDLIIPLADIITPNQFEAEILT 159 (308)
T ss_pred cccee-eeeccCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEeccHHHHHHHHHhhcchhhhcCCcchhhhhhc
Confidence 45555 4566652 2345555555554 455667884211 111 1334567999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhh
Q 023130 263 GMPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 263 g~~~~~~~~~~~~~~~l~~~ 282 (287)
|....+.+++.++.+.|+++
T Consensus 160 g~~I~t~eda~~a~~~lhq~ 179 (308)
T KOG2599|consen 160 GMEIRTEEDAKRAVEKLHQK 179 (308)
T ss_pred CCeeccHHHHHHHHHHHHHh
Confidence 99999999999999999987
No 83
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=95.78 E-value=0.12 Score=48.33 Aligned_cols=173 Identities=13% Similarity=0.133 Sum_probs=92.2
Q ss_pred ceeecCchHHHHHHHHHHcCC-CcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCC------
Q 023130 99 SQTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDG------ 171 (287)
Q Consensus 99 ~~~~~GG~a~N~A~~la~LG~-~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~G------ 171 (287)
...+.||.+.-+|..++++|. +|.+.+.+... .....+...+|-.-...- . ..+.-.-+++--+.|
T Consensus 101 ~~~~mGGnAgimAn~la~~g~~~Vil~~p~~~k----~~~~L~~d~~i~~p~~e~-~--~~~d~IHlIlEy~~G~~~~~~ 173 (445)
T cd01938 101 DELRMGGNAGLMANRLAGEGDLKVLLGVPQSSK----LQAELFLDGPIVVPTFEN-L--IEEDEIHLILEYPRGESWGDF 173 (445)
T ss_pred ceEEeCChHHHHHHHHHhcCCceEEEecCCCcH----HHHHhCCCCCeeeccccc-C--CCCCccEEEEEcCCCCEecce
Confidence 358999999999999999999 77777765442 222222221221111100 0 012233333333333
Q ss_pred -----CeeEEEeCCCCCCCCCcccCchhHh-hhcc-ccEEEEeCCCC-------HHHHHHHHHHHH------hCCCcEEE
Q 023130 172 -----QNSIIIVGGTNMSCWPEKFGDEDLE-VVKK-AGIVLLQREIP-------DSVNIQVAKAAR------SAGVPVIF 231 (287)
Q Consensus 172 -----er~~~~~~ga~~~~~~~~l~~~~~~-~l~~-a~~v~~~g~~~-------~~~~~~~~~~a~------~~g~~v~~ 231 (287)
+|-++.....+. +. ..+++.+ ..+. .|.++++|... .....+.++.++ ...++|-|
T Consensus 174 ~aPraNRfI~~~d~~n~-l~---~~ee~~~~i~~~~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~ 249 (445)
T cd01938 174 VAPRANRFIFHDDDNNP-ML---MREEFFSSILEFQPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHL 249 (445)
T ss_pred EcCCCCeEEEecCCcch-hh---hhHHHHHHHhhcCCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEE
Confidence 343332222222 11 1122222 2333 89999988321 122333333332 23478888
Q ss_pred eCCCCCC-----CCchhhccCCcEEecCHHHHHhhc---CCC--------C--CCHHHHHHHHHHHhhh
Q 023130 232 DAGGMDA-----PIPQELLNFIDILSPNESELGRLT---GMP--------T--DSYEQISEAVVKCHKM 282 (287)
Q Consensus 232 D~~~~~~-----~~~~~ll~~~dil~~Ne~E~~~l~---g~~--------~--~~~~~~~~~~~~l~~~ 282 (287)
...+... .....+++++|-+=+||.|+..|. |.+ . +.+....+.++++.+.
T Consensus 250 E~As~~d~~l~~~i~~~ilp~VDSlGmNEqEL~~l~~~lg~~~~~~~~~~~~~~~v~~v~~~~~~l~~~ 318 (445)
T cd01938 250 ELASTVDEELREEILHEVVPYVDSLGLNEQELANLLQVLGGPHLSLASWNGGPPDVGAVLDILLWLLKE 318 (445)
T ss_pred EecccccHHHHHHHHHHhcccccccccCHHHHHHHHHHhCCCccchhhhccCCCcHHHHHHHHHHHHHH
Confidence 8875532 234578899999999999998775 221 1 3345677777776654
No 84
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=95.20 E-value=0.18 Score=45.28 Aligned_cols=81 Identities=16% Similarity=0.039 Sum_probs=53.0
Q ss_pred ccEEEEeCCCCHHHHHHHHHHHHhCC----C--cEEEeCCC-----C--CC--CCc----hhhccCCcEEecCHHHHHhh
Q 023130 201 AGIVLLQREIPDSVNIQVAKAARSAG----V--PVIFDAGG-----M--DA--PIP----QELLNFIDILSPNESELGRL 261 (287)
Q Consensus 201 a~~v~~~g~~~~~~~~~~~~~a~~~g----~--~v~~D~~~-----~--~~--~~~----~~ll~~~dil~~Ne~E~~~l 261 (287)
.+.+=+.--...+.+..+++..++++ . +|++||-- . .. +.. +.+++++|++.||..|++.|
T Consensus 74 i~aIKiGmL~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~~L 153 (321)
T PTZ00493 74 IDVVKLGVLYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECKVI 153 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHHHH
Confidence 45555533234555666666665542 2 49999941 1 01 111 45899999999999999999
Q ss_pred cC-----CCCCCHHHHHHHHHHHhhh
Q 023130 262 TG-----MPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 262 ~g-----~~~~~~~~~~~~~~~l~~~ 282 (287)
+| .. .+.+++.+++++|.+.
T Consensus 154 ~g~~~~~~~-~~~~~~~~aA~~l~~~ 178 (321)
T PTZ00493 154 LEALDCQMD-LSKANMTELCKLVTEK 178 (321)
T ss_pred hCCCcccCC-CCHHHHHHHHHHHHHh
Confidence 98 32 2467788888888753
No 85
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=94.64 E-value=0.12 Score=44.37 Aligned_cols=90 Identities=28% Similarity=0.317 Sum_probs=61.7
Q ss_pred hhHhhhccccEEEEe-CCCCH---HHHHHHHHHHHhCCCcEEEeCCCCC-----CCCchhhcc--CCcEEecCHHHHHhh
Q 023130 193 EDLEVVKKAGIVLLQ-REIPD---SVNIQVAKAARSAGVPVIFDAGGMD-----APIPQELLN--FIDILSPNESELGRL 261 (287)
Q Consensus 193 ~~~~~l~~a~~v~~~-g~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~-----~~~~~~ll~--~~dil~~Ne~E~~~l 261 (287)
+..+..+-++.+++. |.+.. +.+..+++.|++.|.|+++||-... .....+++. +.+++..|..|...|
T Consensus 48 E~~e~~kia~AL~INIGTL~~~~~~~m~~A~~~An~~~~PvvLDPVgvgAt~~R~~~~~~LL~~~~~~~IrGN~sEI~~L 127 (265)
T COG2145 48 EVEEFAKIADALLINIGTLSAERIQAMRAAIKAANESGKPVVLDPVGVGATKFRTKFALELLAEVKPAAIRGNASEIAAL 127 (265)
T ss_pred HHHHHHHhccceEEeeccCChHHHHHHHHHHHHHHhcCCCEEecCccCCchHHHHHHHHHHHHhcCCcEEeccHHHHHHH
Confidence 444556667777774 34443 5678889999999999999997553 223456665 379999999999999
Q ss_pred cCCCC--------CCHHHHHHHHHHHhhh
Q 023130 262 TGMPT--------DSYEQISEAVVKCHKM 282 (287)
Q Consensus 262 ~g~~~--------~~~~~~~~~~~~l~~~ 282 (287)
.|... .+.++..+.++.+..+
T Consensus 128 ag~~~~~kGVDa~~~~~~~~~~a~~~A~~ 156 (265)
T COG2145 128 AGEAGGGKGVDAGDGAADAIEAAKKAAQK 156 (265)
T ss_pred hcccccccccccccchhhHHHHHHHHHHH
Confidence 86431 3445666666555443
No 86
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=93.23 E-value=0.074 Score=49.98 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=74.7
Q ss_pred eecCchHHHHHHHHHHcCCCcE-EEEeecCCchHHHHHHHHHhCCCCCCceEEcc--------C----CCCCCceEEEEE
Q 023130 101 TLAGGKGANQAACGAKLSHPTY-FVGQVGEDANGKLITDALSGCGVRLDYMNVVK--------D----GGVPTGHAVVML 167 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG~~~~-lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~--------~----~~~~T~~~~v~i 167 (287)
...||.++-+|..++.++.... +.+.++. +.+.+.| ..+|-. ..+.. . ++.+.-.-+++-
T Consensus 92 ~r~GGnA~imAn~la~l~~~~Vil~~p~~s----k~~~~l~-~~~i~~--P~v~~~~~~l~~~~~a~~~~~~~~iH~IlE 164 (444)
T PF04587_consen 92 ERMGGNAGIMANRLANLEGCPVILYAPILS----KEQAELF-NDNIYV--PVVENGELKLIHPREAFKEDDEDDIHLILE 164 (444)
T ss_dssp EEEESHHHHHHHHHCCTT-SEEEEE-SS------HHHHTTS-SSSEEE--EEEETTEEEEEEGGGS-STT----EEEEEE
T ss_pred cccCchHHHHHHHHHhCCCCEEEEecCcCC----HHHHHhc-ccCccc--ccccCCcccccCchhccccCCccceEEEEE
Confidence 3599999999999998876544 4443543 4555555 333311 10000 0 001222333333
Q ss_pred cCCC-----------CeeEEEeCCCCCCCCCcccCchhHhhh----ccccEEEEeCCCC-----------H---HHHHHH
Q 023130 168 QSDG-----------QNSIIIVGGTNMSCWPEKFGDEDLEVV----KKAGIVLLQREIP-----------D---SVNIQV 218 (287)
Q Consensus 168 ~~~G-----------er~~~~~~ga~~~~~~~~l~~~~~~~l----~~a~~v~~~g~~~-----------~---~~~~~~ 218 (287)
-+.| +|-++.+...+..+. ..+++.+.+ .+.|.++++|... . +.+.+.
T Consensus 165 y~~G~~~~~~~aPraNRfI~s~D~~N~~l~---~~e~f~~~l~~~~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~ 241 (444)
T PF04587_consen 165 YKKGEKWGDITAPRANRFIVSSDPYNPRLS---ILEEFFEALEEIAFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQ 241 (444)
T ss_dssp E-TTEEETTEE-SS-EEEEEEE-SSGGGTS-----HHHHHSHHHHHTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHH
T ss_pred cCCCCeecceecCcCceEEEecCCCCcccc---chHHHHHHHHhhccCCCEEEEeccccchhhccchhHHHHHHHHHHHH
Confidence 3333 233333333333322 222333333 4599999988311 1 123333
Q ss_pred HHHHH-hCCCcEEEeCCCCCC-----CCchhhccCCcEEecCHHHHHhhcC
Q 023130 219 AKAAR-SAGVPVIFDAGGMDA-----PIPQELLNFIDILSPNESELGRLTG 263 (287)
Q Consensus 219 ~~~a~-~~g~~v~~D~~~~~~-----~~~~~ll~~~dil~~Ne~E~~~l~g 263 (287)
++..+ ..+++|-|...+... ...+.+++++|.+=+||+|+..|+.
T Consensus 242 i~~l~~~~~~~iH~E~As~~d~~l~~~i~~~ilp~vDSlGmNEqEL~~l~~ 292 (444)
T PF04587_consen 242 IKLLKSNPDIPIHLELASFADEELRKEILEKILPHVDSLGMNEQELANLLS 292 (444)
T ss_dssp HHHHH-HTT-EEEEE----SSHHHHHHHHHHHGGGSSEEEEEHHHHHHHHH
T ss_pred HHhccCCCCCceEEEeccccCHHHHHHHHHHhhccccccccCHHHHHHHHH
Confidence 44455 689999999876532 2346788999999999999988643
No 87
>PRK10565 putative carbohydrate kinase; Provisional
Probab=91.71 E-value=0.87 Score=43.68 Aligned_cols=85 Identities=15% Similarity=0.216 Sum_probs=52.9
Q ss_pred hhhccccEEEEeCCCC-HHHHHHHHHHHHhCCCcEEEeCCCCCCCCchh--hccCCcEEecCHHHHHhhcCCCCCCHH-H
Q 023130 196 EVVKKAGIVLLQREIP-DSVNIQVAKAARSAGVPVIFDAGGMDAPIPQE--LLNFIDILSPNESELGRLTGMPTDSYE-Q 271 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~-~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~--ll~~~dil~~Ne~E~~~l~g~~~~~~~-~ 271 (287)
+.+..++.+++...+. .+...++++.+++.+.|+++|+.... ++.. ......++.||..|++.|+|....+.+ +
T Consensus 316 ~~~~~~~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDAdaL~--ll~~~~~~~~~~VLTPh~gE~~rL~~~~~~~v~~~ 393 (508)
T PRK10565 316 ESLEWADVVVIGPGLGQQEWGKKALQKVENFRKPMLWDADALN--LLAINPDKRHNRVITPHPGEAARLLGCSVAEIESD 393 (508)
T ss_pred HHhhcCCEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEchHHH--HHhhCccccCCeEECCCHHHHHHHhCCChhhhhhh
Confidence 4456788888865443 23345666777888999999997531 1110 011257999999999999996443332 3
Q ss_pred HHHHHHHHhhh
Q 023130 272 ISEAVVKCHKM 282 (287)
Q Consensus 272 ~~~~~~~l~~~ 282 (287)
..+.++++.++
T Consensus 394 ~~~~a~~~a~~ 404 (508)
T PRK10565 394 RLLSARRLVKR 404 (508)
T ss_pred HHHHHHHHHHH
Confidence 33445554443
No 88
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=90.91 E-value=1.3 Score=38.27 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=55.2
Q ss_pred hhhccccEEEEeCCCC-----HHHHHHHHHHHHhCCCcEEEeCCCCC--CCCchhhcc--CCcEEecCHHHHHhhcCCCC
Q 023130 196 EVVKKAGIVLLQREIP-----DSVNIQVAKAARSAGVPVIFDAGGMD--APIPQELLN--FIDILSPNESELGRLTGMPT 266 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~-----~~~~~~~~~~a~~~g~~v~~D~~~~~--~~~~~~ll~--~~dil~~Ne~E~~~l~g~~~ 266 (287)
..+.+-..+++...+- ...+..+++.++++++|+++|..+.+ .+..+.++. ..-|+.||-.|+.+|++...
T Consensus 97 k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l 176 (306)
T KOG3974|consen 97 KLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAEL 176 (306)
T ss_pred HHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhh
Confidence 3566777888864332 23477889999999999999998754 122222332 23688999999999998632
Q ss_pred ---CCHHHHHHHHHHH
Q 023130 267 ---DSYEQISEAVVKC 279 (287)
Q Consensus 267 ---~~~~~~~~~~~~l 279 (287)
+....+...+.++
T Consensus 177 ~~~d~~~~~~~L~~~l 192 (306)
T KOG3974|consen 177 DKVDSHSQMQHLAAEL 192 (306)
T ss_pred ccccchHHHHHHHHHh
Confidence 2334444444444
No 89
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=90.79 E-value=1.4 Score=37.09 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=53.9
Q ss_pred cEEEEeCCCC---HHHHHHHHHHHHhCCCcEEEeCCCCCC-CCchhhccCCcEE-----ecCHHHHHhhcCCCCCCHHHH
Q 023130 202 GIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMDA-PIPQELLNFIDIL-----SPNESELGRLTGMPTDSYEQI 272 (287)
Q Consensus 202 ~~v~~~g~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~ll~~~dil-----~~Ne~E~~~l~g~~~~~~~~~ 272 (287)
+-|.++|.-| .+.+.++++.+|+.|+.+.+|.++... ...+.+++.+|.+ .++.+....++|.. .+.+
T Consensus 40 gGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~---~~~i 116 (213)
T PRK10076 40 GGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMN---LPRV 116 (213)
T ss_pred CEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCC---HHHH
Confidence 5666776533 567889999999999999999997532 3456677777665 45777778899853 4555
Q ss_pred HHHHHHHhh
Q 023130 273 SEAVVKCHK 281 (287)
Q Consensus 273 ~~~~~~l~~ 281 (287)
.+.++.+.+
T Consensus 117 l~nl~~l~~ 125 (213)
T PRK10076 117 LENLRLLVS 125 (213)
T ss_pred HHHHHHHHh
Confidence 555555443
No 90
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=83.28 E-value=2.6 Score=33.28 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=43.5
Q ss_pred EEEEe-CCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHH
Q 023130 203 IVLLQ-REIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELG 259 (287)
Q Consensus 203 ~v~~~-g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~ 259 (287)
.|.++ |++..+.+.++++.+++.|.++.++.+....+..+++++.+|+++....+.+
T Consensus 64 gVt~SGGEl~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~il~~iD~l~~g~y~~~ 121 (147)
T TIGR02826 64 CVLFLGGEWNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLELVQHLDYLKTGRWIHT 121 (147)
T ss_pred EEEEechhcCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhCCEEEEChHHHH
Confidence 45554 4644466889999999999999999986544456788999999999986533
No 91
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=82.81 E-value=1.1 Score=38.48 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=46.7
Q ss_pred hHhhhccccEEEEeCCCC-HHHHHHHHHHHHhCCCcEEEeCCCCCCCCch--hhccCCcEEecCHHHHHhhcCCCC
Q 023130 194 DLEVVKKAGIVLLQREIP-DSVNIQVAKAARSAGVPVIFDAGGMDAPIPQ--ELLNFIDILSPNESELGRLTGMPT 266 (287)
Q Consensus 194 ~~~~l~~a~~v~~~g~~~-~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~--~ll~~~dil~~Ne~E~~~l~g~~~ 266 (287)
..+.+++++.+++...+. .+...++++...+...++++|..... .+.. .....--|+.|+.-|+..|++...
T Consensus 61 ~~~~~~~~~av~iGPGlg~~~~~~~~~~~~~~~~~p~VlDADaL~-~l~~~~~~~~~~~IlTPH~gE~~rL~~~~~ 135 (242)
T PF01256_consen 61 ILELLEKADAVVIGPGLGRDEETEELLEELLESDKPLVLDADALN-LLAENPKKRNAPVILTPHPGEFARLLGKSV 135 (242)
T ss_dssp HHHHHCH-SEEEE-TT-SSSHHHHHHHHHHHHHCSTEEEECHHHH-CHHHCCCCSSSCEEEE-BHHHHHHHHTTTC
T ss_pred hHhhhccCCEEEeecCCCCchhhHHHHHHHHhhcceEEEehHHHH-HHHhccccCCCCEEECCCHHHHHHHhCCcc
Confidence 345678899999965443 23345567777677889999997431 1111 344567899999999999999754
No 92
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=82.20 E-value=4.7 Score=35.08 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=55.1
Q ss_pred cccEEEEeCCCC---HHHHHHHHHHHHhCCCcEEEeCCCCCC-CCchhhccCCcEEe-----cCHHHHHhhcCCCCCCHH
Q 023130 200 KAGIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMDA-PIPQELLNFIDILS-----PNESELGRLTGMPTDSYE 270 (287)
Q Consensus 200 ~a~~v~~~g~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~ll~~~dil~-----~Ne~E~~~l~g~~~~~~~ 270 (287)
..+-|.++|.-| .+.+.++++.||+.|..+++|.++... ...+.+++.+|.+. ++++-...++|.+. +
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~~~~~~~l~~~~D~v~~DlK~~~~~~y~~~tg~~~---~ 159 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKERGLHVALDTNGFLPPEALEELLPLLDAVLLDLKAFDDELYRKLTGADN---E 159 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHhhcCeEEEeeccCChHHHHHHhCCCc---H
Confidence 467777777654 467899999999999999999997642 23456777777663 44455888998653 4
Q ss_pred HHHHHHHHHhh
Q 023130 271 QISEAVVKCHK 281 (287)
Q Consensus 271 ~~~~~~~~l~~ 281 (287)
-..+.++.+.+
T Consensus 160 ~vl~~~~~l~~ 170 (260)
T COG1180 160 PVLENLELLAD 170 (260)
T ss_pred HHHHHHHHHHc
Confidence 55555555544
No 93
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=78.78 E-value=4 Score=37.84 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=51.2
Q ss_pred ccEEEEeCCCCHHHHHHHHH-HHHhCC-CcEEEeCCCC--------CCC----CchhhccCCcEEecCHHHHHhhcCC--
Q 023130 201 AGIVLLQREIPDSVNIQVAK-AARSAG-VPVIFDAGGM--------DAP----IPQELLNFIDILSPNESELGRLTGM-- 264 (287)
Q Consensus 201 a~~v~~~g~~~~~~~~~~~~-~a~~~g-~~v~~D~~~~--------~~~----~~~~ll~~~dil~~Ne~E~~~l~g~-- 264 (287)
++++=. |-++...+..++. .+.+.+ .++++||--. ..+ +.+++++.+|++.||-.|+-.|++.
T Consensus 93 C~VvKT-GML~~~~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll~~~~ 171 (523)
T KOG2598|consen 93 CDVVKT-GMLPSPEIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILLKKEK 171 (523)
T ss_pred ccEEee-cCcCchHHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHHhhcc
Confidence 555543 4444333333333 333333 4688898311 112 3578999999999999999999883
Q ss_pred ----CCCCHHHHHHHHHHHhhh
Q 023130 265 ----PTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 265 ----~~~~~~~~~~~~~~l~~~ 282 (287)
+..+..+++..+.++++.
T Consensus 172 ~~~~~i~~v~di~~~~~~ihk~ 193 (523)
T KOG2598|consen 172 REISKIQSVFDIAKDAAKIHKL 193 (523)
T ss_pred cCCcccccHHHHHHHHHHHHhc
Confidence 345677887777777653
No 94
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=76.45 E-value=7.2 Score=32.78 Aligned_cols=82 Identities=20% Similarity=0.071 Sum_probs=54.2
Q ss_pred hccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCC--Cchhhc-cCCcEEecCHHHHHhhcCCCCCCHHHHHH
Q 023130 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAP--IPQELL-NFIDILSPNESELGRLTGMPTDSYEQISE 274 (287)
Q Consensus 198 l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~--~~~~ll-~~~dil~~Ne~E~~~l~g~~~~~~~~~~~ 274 (287)
-..+||+.+.+-.+.+++..+++.|++.|+.+.+|.-..+.. ..+.+- -.+|++..-..--.+..|... ..+..+
T Consensus 78 ~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~--~~~~l~ 155 (217)
T COG0269 78 EAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSW--GEDDLE 155 (217)
T ss_pred HcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCc--cHHHHH
Confidence 467999999998899999999999999999999999765421 112222 356666554432233367532 134455
Q ss_pred HHHHHhh
Q 023130 275 AVVKCHK 281 (287)
Q Consensus 275 ~~~~l~~ 281 (287)
..+++.+
T Consensus 156 ~ik~~~~ 162 (217)
T COG0269 156 KIKKLSD 162 (217)
T ss_pred HHHHhhc
Confidence 5566554
No 95
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=76.28 E-value=12 Score=33.02 Aligned_cols=69 Identities=25% Similarity=0.392 Sum_probs=42.9
Q ss_pred hccccEEEEeCCCC-HHHHHHHHHHHHhCC-CcEEEeCCCCC-CCCchhhc-cCCcEEecCHHHHHhhcCCCC
Q 023130 198 VKKAGIVLLQREIP-DSVNIQVAKAARSAG-VPVIFDAGGMD-APIPQELL-NFIDILSPNESELGRLTGMPT 266 (287)
Q Consensus 198 l~~a~~v~~~g~~~-~~~~~~~~~~a~~~g-~~v~~D~~~~~-~~~~~~ll-~~~dil~~Ne~E~~~l~g~~~ 266 (287)
.++++.+++...+- .+...++++..-+.. +++++|..... ......+. ..--|+.|+.-|++.|+|.+.
T Consensus 99 ~~~~~avviGpGlG~~~~~~~~~~~~l~~~~~p~ViDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g~~~ 171 (284)
T COG0063 99 VERADAVVIGPGLGRDAEGQEALKELLSSDLKPLVLDADALNLLAELPDLLDERKVVLTPHPGEFARLLGTEV 171 (284)
T ss_pred hccCCEEEECCCCCCCHHHHHHHHHHHhccCCCEEEeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcCCcc
Confidence 46788888864332 222455555555555 89999997542 01111222 223899999999999999543
No 96
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=76.23 E-value=6.6 Score=29.59 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=31.0
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD 237 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 237 (287)
+.+.++|+++++ .+.+...++...+.+.|+ .++|.++..
T Consensus 62 ~~~~~~Dvvf~a--~~~~~~~~~~~~~~~~g~-~ViD~s~~~ 100 (121)
T PF01118_consen 62 EELSDVDVVFLA--LPHGASKELAPKLLKAGI-KVIDLSGDF 100 (121)
T ss_dssp HHHTTESEEEE---SCHHHHHHHHHHHHHTTS-EEEESSSTT
T ss_pred hHhhcCCEEEec--CchhHHHHHHHHHhhCCc-EEEeCCHHH
Confidence 557889999986 567778888888888898 889998653
No 97
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=75.38 E-value=2.5 Score=38.00 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=77.9
Q ss_pred CceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCC--CCCCceEEccCCCCCCceEEE-EEcCCCCee
Q 023130 98 TSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG--VRLDYMNVVKDGGVPTGHAVV-MLQSDGQNS 174 (287)
Q Consensus 98 ~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~g--Vd~~~v~~~~~~~~~T~~~~v-~i~~~Ger~ 174 (287)
+..++.||.+.=.|.-...-| .+.++|..|.-...-.+=+..+-.| |--+-+...- ++..|-.+- .+.+...|.
T Consensus 137 R~~~~mGGNA~LMA~R~~~~~-~~~LlG~~~~R~~~~L~P~~~R~~~~~I~~DdiHlIL--EYK~Gd~~G~~VAP~anR~ 213 (478)
T KOG4184|consen 137 RINWYMGGNAPLMAVRFFMEG-AQVLLGAHMSRKLRPLLPKEIRLAGDEIPNDDIHLIL--EYKAGDKWGPYVAPRANRY 213 (478)
T ss_pred hhhhhccCCchHHHHHHHhcc-ceeeecccccchhccccchhhhcccCcCcCCceEEEE--EeccCCcccccccccccce
Confidence 467899998888888777666 7889999887533322222222222 2111111100 001110000 111222333
Q ss_pred EEEeCCCCCCCCCcccCchhHhhhc--cccEEEEeCCCCHHH---------HHHHHHHHH--hCCCcEEEeCCCCCC---
Q 023130 175 IIIVGGTNMSCWPEKFGDEDLEVVK--KAGIVLLQREIPDSV---------NIQVAKAAR--SAGVPVIFDAGGMDA--- 238 (287)
Q Consensus 175 ~~~~~ga~~~~~~~~l~~~~~~~l~--~a~~v~~~g~~~~~~---------~~~~~~~a~--~~g~~v~~D~~~~~~--- 238 (287)
+.....-+.... .-+.+.+.++ +.|+|+++|-...+. ++++.+..- ..|+++-|...+...
T Consensus 214 I~~~D~~n~~m~---~~E~f~~Al~~fqPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~~~~l 290 (478)
T KOG4184|consen 214 ILHNDRNNPHMR---AVEQFTDALKMFQPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMTNREL 290 (478)
T ss_pred eeecCCCChHHH---HHHHHHHHHHHhCCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHHHHHH
Confidence 322221111110 0112223332 479999988422111 111111111 237777777765431
Q ss_pred --CCchhhccCCcEEecCHHHHHhhcC
Q 023130 239 --PIPQELLNFIDILSPNESELGRLTG 263 (287)
Q Consensus 239 --~~~~~ll~~~dil~~Ne~E~~~l~g 263 (287)
+....+++++|-+=+||.|+..|..
T Consensus 291 ~~~i~h~VlPyVdSLGlNEQEL~fL~q 317 (478)
T KOG4184|consen 291 MSSIVHQVLPYVDSLGLNEQELLFLTQ 317 (478)
T ss_pred HHHHHHHhhhhccccCCCHHHHHHHHH
Confidence 2345789999999999999987743
No 98
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=74.45 E-value=11 Score=30.60 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=58.5
Q ss_pred cccEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCC---CCchhhccCCcEEecCHHHHHh---hcCCCCCCHHHH
Q 023130 200 KAGIVLLQRE-IPDSVNIQVAKAARSAGVPVIFDAGGMDA---PIPQELLNFIDILSPNESELGR---LTGMPTDSYEQI 272 (287)
Q Consensus 200 ~a~~v~~~g~-~~~~~~~~~~~~a~~~g~~v~~D~~~~~~---~~~~~ll~~~dil~~Ne~E~~~---l~g~~~~~~~~~ 272 (287)
.++++...|. ++.+++..+-+.++.+|+.|..||...-. ..+.+.++.+-..+....++.. -.|.+.-+++++
T Consensus 22 d~~~I~T~Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~~GekIRk~i~~~vp~~khafi~~~~a~~~~~~iGVE~As~e~I 101 (174)
T TIGR00334 22 DVDVIETNGSALKDETINLIKKAQKKQGVIILTDPDFPGEKIRKKIEQHLPGYENCFIPKHLAKPNKKKIGVEEASVEAI 101 (174)
T ss_pred CceEEEECCCccCHHHHHHHHHHhhcCCEEEEeCCCCchHHHHHHHHHHCCCCeEEeeeHHhcCcCCCCcccCCCCHHHH
Confidence 4788888776 46676666666777889999999976532 2344556778888888888742 356666678888
Q ss_pred HHHHHHHhh
Q 023130 273 SEAVVKCHK 281 (287)
Q Consensus 273 ~~~~~~l~~ 281 (287)
.+++..+..
T Consensus 102 ~~AL~~~~~ 110 (174)
T TIGR00334 102 IAALENVHE 110 (174)
T ss_pred HHHHHHhcc
Confidence 888877654
No 99
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=73.28 E-value=17 Score=29.56 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=48.6
Q ss_pred cEEEEeCCCC---HHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhcc--CCcEEec----CHHHHHhhcCCCCCCHHHH
Q 023130 202 GIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLN--FIDILSP----NESELGRLTGMPTDSYEQI 272 (287)
Q Consensus 202 ~~v~~~g~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~--~~dil~~----Ne~E~~~l~g~~~~~~~~~ 272 (287)
+.+.+.|.-| ++ +.++++.+++.|..+.+.+++......+.++. ..|.+.+ .+++...++|.+....++.
T Consensus 64 ~~i~~sGGEPll~~~-l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~~~~~ 142 (191)
T TIGR02495 64 DGVVITGGEPTLQAG-LPDFLRKVRELGFEVKLDTNGSNPRVLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNGSNNI 142 (191)
T ss_pred CeEEEECCcccCcHh-HHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCchHHHH
Confidence 4566666333 34 77889999999999999998764333444443 3465544 4455677888543322356
Q ss_pred HHHHHHHhh
Q 023130 273 SEAVVKCHK 281 (287)
Q Consensus 273 ~~~~~~l~~ 281 (287)
.+.++.+.+
T Consensus 143 ~~~i~~l~~ 151 (191)
T TIGR02495 143 LKSLEILLR 151 (191)
T ss_pred HHHHHHHHH
Confidence 666655543
No 100
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=70.65 E-value=60 Score=30.01 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=58.5
Q ss_pred hhhccccEEEEeCCCC-------H-------HHHHHHHHHHHh-CCCcEEEeCCCCCC-----CCchhhccCCcEEecCH
Q 023130 196 EVVKKAGIVLLQREIP-------D-------SVNIQVAKAARS-AGVPVIFDAGGMDA-----PIPQELLNFIDILSPNE 255 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~-------~-------~~~~~~~~~a~~-~g~~v~~D~~~~~~-----~~~~~ll~~~dil~~Ne 255 (287)
+.....|...++|..+ . +...+-++..|+ .++++=+...+... ..+..+++.++=+=+||
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~d~~irk~i~~~il~~v~SvGldE 300 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQDRKIRKEILTNILSIVYSVGLDE 300 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccccHHHHHHHHHHHHhhhhhcCCCH
Confidence 3445688888888422 0 123334444555 68888888875431 23456889999999999
Q ss_pred HHHHhhcCCC-----------CCCHHHHHHHHHHHhhhccc
Q 023130 256 SELGRLTGMP-----------TDSYEQISEAVVKCHKMVSV 285 (287)
Q Consensus 256 ~E~~~l~g~~-----------~~~~~~~~~~~~~l~~~v~v 285 (287)
.|...++..- -+++++..+.+.+|.+...+
T Consensus 301 ~ElA~vl~vlG~~eLa~~I~~~~~~~avieg~~~L~~e~~~ 341 (466)
T COG4809 301 VELANVLNVLGYRELADRIISKDDIEAVIEGAMILLDELGL 341 (466)
T ss_pred HHHHHHHHhhChHHHHHhhhccccHHHHHHHHHHHHHhcCc
Confidence 9987764431 13577888888888776644
No 101
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=66.88 E-value=17 Score=26.22 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=51.0
Q ss_pred eecC-CchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEE
Q 023130 126 QVGE-DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIV 204 (287)
Q Consensus 126 ~vG~-D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v 204 (287)
.||. +..-..+.+.+++.|....+. .. .+|... . .......+..+|+|
T Consensus 4 iVGG~~~~~~~~~~~~~~~G~~~~~h--g~--------------~~~~~~-------------~--~~~l~~~i~~aD~V 52 (97)
T PF10087_consen 4 IVGGREDRERRYKRILEKYGGKLIHH--GR--------------DGGDEK-------------K--ASRLPSKIKKADLV 52 (97)
T ss_pred EEcCCcccHHHHHHHHHHcCCEEEEE--ec--------------CCCCcc-------------c--hhHHHHhcCCCCEE
Confidence 4555 446778889999888775432 11 111110 0 01123567889997
Q ss_pred EE-eCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 205 LL-QREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 205 ~~-~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
++ .+.........+-+.|++.++|+++--+
T Consensus 53 Iv~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 53 IVFTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred EEEeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 65 4467778888999999999999998653
No 102
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=65.80 E-value=18 Score=31.84 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=48.3
Q ss_pred cEEEEeCCCC---HHHHHHHHHHHHhCCCcEEEeCCCCCC-CCchhhccCCcEEe-----cCHHHHHhhcCCCCCCHHHH
Q 023130 202 GIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMDA-PIPQELLNFIDILS-----PNESELGRLTGMPTDSYEQI 272 (287)
Q Consensus 202 ~~v~~~g~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~~-~~~~~ll~~~dil~-----~Ne~E~~~l~g~~~~~~~~~ 272 (287)
..|.+.|.-| ++.+.++++.+++.|..+.++.++... +...++++..|++. .+++....+.|. +.+.+
T Consensus 127 ~~V~~sGGEPll~~~~l~~l~~~~k~~g~~~~i~TnG~~~~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~---~~~~v 203 (295)
T TIGR02494 127 GGVTLSGGEPLLQPEFALALLQACHERGIHTAVETSGFTPWETIEKVLPYVDLFLFDIKHLDDERHKEVTGV---DNEPI 203 (295)
T ss_pred CcEEeeCcchhchHHHHHHHHHHHHHcCCcEeeeCCCCCCHHHHHHHHhhCCEEEEeeccCChHHHHHHhCC---ChHHH
Confidence 3455555433 455678899999999999999987532 23455666667653 456666777774 23455
Q ss_pred HHHHHHHhh
Q 023130 273 SEAVVKCHK 281 (287)
Q Consensus 273 ~~~~~~l~~ 281 (287)
.+.++.+.+
T Consensus 204 l~~i~~l~~ 212 (295)
T TIGR02494 204 LENLEALAA 212 (295)
T ss_pred HHHHHHHHh
Confidence 555555443
No 103
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=65.52 E-value=49 Score=31.14 Aligned_cols=100 Identities=18% Similarity=0.149 Sum_probs=55.2
Q ss_pred eeecCchHHHHHHHHHHcCCCcEEEEeecCCchH---HHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEE
Q 023130 100 QTLAGGKGANQAACGAKLSHPTYFVGQVGEDANG---KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSII 176 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G---~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~ 176 (287)
....+|.+++.+..++-++..-.+|. ..+.|+ ..+...+...|+++.++...
T Consensus 80 v~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~----------------------- 134 (432)
T PRK06702 80 VATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPN----------------------- 134 (432)
T ss_pred EEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCC-----------------------
Confidence 45788998888777766653222222 233455 44455578888876543110
Q ss_pred EeCCCCCCCCCcccCchhHhhh-ccccEEEEeCCCCHH----HHHHHHHHHHhCCCcEEEeCCCC
Q 023130 177 IVGGTNMSCWPEKFGDEDLEVV-KKAGIVLLQREIPDS----VNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 177 ~~~ga~~~~~~~~l~~~~~~~l-~~a~~v~~~g~~~~~----~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
.+++.+. +.+ .+.+++++...-.+. .+.++.+.|+++|++++.|-...
T Consensus 135 --------~d~~~l~----~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 135 --------LTADEIV----ALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred --------CCHHHHH----HhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCC
Confidence 0011111 111 234555554311111 26788888999999999998643
No 104
>PRK05967 cystathionine beta-lyase; Provisional
Probab=65.38 E-value=72 Score=29.60 Aligned_cols=37 Identities=19% Similarity=0.135 Sum_probs=27.2
Q ss_pred cccEEEEeCC----CCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 200 KAGIVLLQRE----IPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 200 ~a~~v~~~g~----~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+.++|+++.. .....+.++.+.|+++|+.+++|-...
T Consensus 149 ~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 149 NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 4577777642 123448889999999999999998743
No 105
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=63.05 E-value=16 Score=31.25 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=41.0
Q ss_pred EEEEeCCCC---HHHHHHHHHHHHhCCCcEEEeCCCCC---CCCchhhccCCcEEec-----CHHHHHhhcCC
Q 023130 203 IVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMD---APIPQELLNFIDILSP-----NESELGRLTGM 264 (287)
Q Consensus 203 ~v~~~g~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~ll~~~dil~~-----Ne~E~~~l~g~ 264 (287)
.|.++|.-| .+.+.++++.+++.|..+.++.++.. .+..+.+++.+|.+.+ +++....+.|.
T Consensus 73 ~V~~sGGEPll~~~~~~~l~~~~k~~g~~i~l~TNG~~~~~~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~ 145 (246)
T PRK11145 73 GVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLKQMNDEIHQNLVGV 145 (246)
T ss_pred eEEEeCccHhcCHHHHHHHHHHHHHcCCCEEEECCCCCCcchHHHHHHHHhCCEEEECCCcCChhhcccccCC
Confidence 455665433 45567899999999999999998753 2344566667776544 44445566664
No 106
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=61.09 E-value=61 Score=29.82 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=56.1
Q ss_pred CcEEEEeecCCchHHHHHH-HHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhh
Q 023130 120 PTYFVGQVGEDANGKLITD-ALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVV 198 (287)
Q Consensus 120 ~~~lig~vG~D~~G~~i~~-~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l 198 (287)
++.++|.-|- .|+.+++ .|++..+....+.... .... |.+. ..+.+.... ..++. ..+.+
T Consensus 3 ~VAIVGATG~--vG~ell~llL~~~~f~~~~l~~~s--s~~s----------g~~~-~~f~g~~~~--v~~~~--~~~~~ 63 (369)
T PRK06598 3 KVGFVGWRGM--VGSVLMQRMVEENDFDLIEPVFFS--TSQA----------GGAA-PSFGGKEGT--LQDAF--DIDAL 63 (369)
T ss_pred EEEEEeCCCH--HHHHHHHHHHhCCCCCcCcEEEec--chhh----------CCcc-cccCCCcce--EEecC--ChhHh
Confidence 3455565554 7999998 8888888755554433 2111 2111 111111100 01111 12345
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCc-EEEeCCCC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGM 236 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~-v~~D~~~~ 236 (287)
.+.|+++++. +.+...++...+.+.|.+ +++|.++.
T Consensus 64 ~~~Divf~a~--~~~~s~~~~~~~~~aG~~~~VID~Ss~ 100 (369)
T PRK06598 64 KKLDIIITCQ--GGDYTNEVYPKLRAAGWQGYWIDAAST 100 (369)
T ss_pred cCCCEEEECC--CHHHHHHHHHHHHhCCCCeEEEECChH
Confidence 7799998853 667788888888888985 89999854
No 107
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=60.46 E-value=91 Score=28.09 Aligned_cols=88 Identities=11% Similarity=0.128 Sum_probs=54.0
Q ss_pred EeecCCchHHHHHHHHHhCCCCCCceEEccCCC-CCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccE
Q 023130 125 GQVGEDANGKLITDALSGCGVRLDYMNVVKDGG-VPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGI 203 (287)
Q Consensus 125 g~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~-~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~ 203 (287)
|.-|. .|+.+++.|++.+...+.+..... . ...|..+.+- |+ .+. -+.+.+ +.+++.|+
T Consensus 9 GATg~--VG~~~l~~Leer~fpv~~l~l~~s-~~~s~gk~i~f~---g~-~~~----------V~~l~~---~~f~~vDi 68 (322)
T PRK06901 9 AAEFE--LSEKLLEALEQSDLEIEQISIVEI-EPFGEEQGIRFN---NK-AVE----------QIAPEE---VEWADFNY 68 (322)
T ss_pred ecCcH--HHHHHHHHHHhcCCchhheeeccc-ccccCCCEEEEC---CE-EEE----------EEECCc---cCcccCCE
Confidence 55554 899999999999988875555431 1 2233332221 21 111 133433 34678999
Q ss_pred EEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 204 VLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 204 v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+++ + ..+...+++..+.+.|+ +++|-++.
T Consensus 69 a~f-a--g~~~s~~~ap~a~~aG~-~VIDnSsa 97 (322)
T PRK06901 69 VFF-A--GKMAQAEHLAQAAEAGC-IVIDLYGI 97 (322)
T ss_pred EEE-c--CHHHHHHHHHHHHHCCC-EEEECChH
Confidence 988 3 34567788888888888 66676643
No 108
>PRK09028 cystathionine beta-lyase; Provisional
Probab=60.31 E-value=91 Score=28.92 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=26.1
Q ss_pred cccEEEEeCCC----CHHHHHHHHHHHHhCCCcEEEeCCC
Q 023130 200 KAGIVLLQREI----PDSVNIQVAKAARSAGVPVIFDAGG 235 (287)
Q Consensus 200 ~a~~v~~~g~~----~~~~~~~~~~~a~~~g~~v~~D~~~ 235 (287)
+.++++++... ....+.++++.|+++|+.+++|-..
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~ 185 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTW 185 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCc
Confidence 46677775421 1344788899999999999999864
No 109
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=60.07 E-value=79 Score=28.41 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEE-----ecCHHHHHhhcCC-CCCCHHHHHHHHHHHhh
Q 023130 214 VNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDIL-----SPNESELGRLTGM-PTDSYEQISEAVVKCHK 281 (287)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil-----~~Ne~E~~~l~g~-~~~~~~~~~~~~~~l~~ 281 (287)
.+.++++.+++.|+.+.++.|+...+..+.+....|.+ .++++....+.+. .....+.+.+.++.+.+
T Consensus 146 ~l~eli~~~k~~Gi~~~L~TNG~~~e~l~~L~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~ 219 (322)
T PRK13762 146 YLPELIEEFHKRGFTTFLVTNGTRPDVLEKLEEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPS 219 (322)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 47889999999999999999986433445554444444 3456667777763 22456667776666654
No 110
>PRK07050 cystathionine beta-lyase; Provisional
Probab=59.82 E-value=1.1e+02 Score=28.13 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=26.0
Q ss_pred cccEEEEeCC----CCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 200 KAGIVLLQRE----IPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 200 ~a~~v~~~g~----~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+.++++++.. .....+.++.+.|+++|+.+++|-...
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a 190 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYS 190 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcc
Confidence 3566666432 133457888899999999999998753
No 111
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=59.82 E-value=92 Score=28.39 Aligned_cols=95 Identities=17% Similarity=0.226 Sum_probs=56.6
Q ss_pred CCcEEEEeecCCchHHHHHHHHH-hCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhh
Q 023130 119 HPTYFVGQVGEDANGKLITDALS-GCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV 197 (287)
Q Consensus 119 ~~~~lig~vG~D~~G~~i~~~L~-~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~ 197 (287)
.++.++|.-|- .|+.+++.|. +..+....+..... ....|..+.+. +.+ +.-+.+++ +.
T Consensus 6 ~~VaIvGATG~--vG~ell~lL~~h~~f~v~~l~~~aS-~~saGk~~~~~------------~~~--l~v~~~~~---~~ 65 (347)
T PRK06728 6 YHVAVVGATGA--VGQKIIELLEKETKFNIAEVTLLSS-KRSAGKTVQFK------------GRE--IIIQEAKI---NS 65 (347)
T ss_pred CEEEEEeCCCH--HHHHHHHHHHHCCCCCcccEEEEEC-cccCCCCeeeC------------Ccc--eEEEeCCH---HH
Confidence 45666776655 8999999999 57787554432220 22333333221 111 11122222 33
Q ss_pred hccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 198 l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+.+.|+++++. +.+...+++..+.+.|+ +++|.++.
T Consensus 66 ~~~~Divf~a~--~~~~s~~~~~~~~~~G~-~VID~Ss~ 101 (347)
T PRK06728 66 FEGVDIAFFSA--GGEVSRQFVNQAVSSGA-IVIDNTSE 101 (347)
T ss_pred hcCCCEEEECC--ChHHHHHHHHHHHHCCC-EEEECchh
Confidence 56789998854 66677888888878785 78888754
No 112
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=58.95 E-value=51 Score=31.03 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCcEEEeCCC
Q 023130 215 NIQVAKAARSAGVPVIFDAGG 235 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~ 235 (287)
+.++.+.|+++|+++++|...
T Consensus 174 i~~I~~la~~~gi~livD~t~ 194 (437)
T PRK05613 174 IPAVAEVAHRNQVPLIVDNTI 194 (437)
T ss_pred HHHHHHHHHHcCCeEEEECCC
Confidence 778888899999999999974
No 113
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=58.32 E-value=19 Score=31.26 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCCcEEEEeecCC
Q 023130 108 ANQAACGAKLSHPTYFVGQVGED 130 (287)
Q Consensus 108 ~N~A~~la~LG~~~~lig~vG~D 130 (287)
.-.|--|..+|.++..+..||||
T Consensus 24 ~~la~~L~~~G~~v~~~~~VgD~ 46 (255)
T COG1058 24 AFLADELTELGVDLARITTVGDN 46 (255)
T ss_pred HHHHHHHHhcCceEEEEEecCCC
Confidence 34444444455555555555554
No 114
>PRK04148 hypothetical protein; Provisional
Probab=58.23 E-value=22 Score=27.66 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=33.4
Q ss_pred hHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCC
Q 023130 194 DLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGG 235 (287)
Q Consensus 194 ~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~ 235 (287)
..+.-+++++++-. ..|++....+++.|++.|+.+++-|=+
T Consensus 71 ~~~~y~~a~liysi-rpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 71 NLEIYKNAKLIYSI-RPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CHHHHhcCCEEEEe-CCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 33566789999865 678888999999999999999987743
No 115
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=57.67 E-value=1e+02 Score=27.91 Aligned_cols=98 Identities=23% Similarity=0.353 Sum_probs=55.2
Q ss_pred CCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhh
Q 023130 119 HPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVV 198 (287)
Q Consensus 119 ~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l 198 (287)
.++.++|.-|. .|+.+.+.|++......-+.... .++ .-|++..-+ .+-... .++.. .....+
T Consensus 2 ~~VavvGATG~--VG~~~~~~L~e~~f~~~~~~~~A----S~r-------SaG~~~~~f-~~~~~~-v~~~~--~~~~~~ 64 (334)
T COG0136 2 LNVAVLGATGA--VGQVLLELLEERHFPFEELVLLA----SAR-------SAGKKYIEF-GGKSIG-VPEDA--ADEFVF 64 (334)
T ss_pred cEEEEEeccch--HHHHHHHHHHhcCCCcceEEEEe----ccc-------ccCCccccc-cCcccc-Ccccc--cccccc
Confidence 45677887776 89999999999876665333322 111 123321111 110000 01111 112335
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+..|+++++. +.+...++..++.+.|+ +++|-++.
T Consensus 65 ~~~Divf~~a--g~~~s~~~~p~~~~~G~-~VIdnsSa 99 (334)
T COG0136 65 SDVDIVFFAA--GGSVSKEVEPKAAEAGC-VVIDNSSA 99 (334)
T ss_pred ccCCEEEEeC--chHHHHHHHHHHHHcCC-EEEeCCcc
Confidence 5899999864 44556788888999996 66666543
No 116
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=57.03 E-value=23 Score=27.34 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhCC-CcEEEeCC
Q 023130 213 SVNIQVAKAARSAG-VPVIFDAG 234 (287)
Q Consensus 213 ~~~~~~~~~a~~~g-~~v~~D~~ 234 (287)
++...+.+..++.+ ..+.+||.
T Consensus 40 ~T~~~i~~L~~~~~~~~v~IdP~ 62 (130)
T TIGR02742 40 ATATRIQSLIKDGGKSGVQIDPQ 62 (130)
T ss_pred HHHHHHHHHHhcCCCCcEEEChH
Confidence 34444444433333 56777775
No 117
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=56.70 E-value=20 Score=26.92 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhCC--CcEEEeCC
Q 023130 213 SVNIQVAKAARSAG--VPVIFDAG 234 (287)
Q Consensus 213 ~~~~~~~~~a~~~g--~~v~~D~~ 234 (287)
++...+.+..++.+ ..+.+||.
T Consensus 39 ~t~~~~~~l~~~~~~~~~v~IdP~ 62 (113)
T PF09673_consen 39 PTAKAIQELLRKDDPCPGVQIDPR 62 (113)
T ss_pred HHHHHHHHHhhccCCCcceeEChh
Confidence 33334444443332 35666665
No 118
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=55.10 E-value=93 Score=25.24 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=70.7
Q ss_pred cCCchHHHHHHHHHhCCCCCCceEEcc--CCCCCCceEEEEEcCCCCeeEEEeCCCCCCC------CCcccC----chhH
Q 023130 128 GEDANGKLITDALSGCGVRLDYMNVVK--DGGVPTGHAVVMLQSDGQNSIIIVGGTNMSC------WPEKFG----DEDL 195 (287)
Q Consensus 128 G~D~~G~~i~~~L~~~gVd~~~v~~~~--~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~------~~~~l~----~~~~ 195 (287)
|.-..-..+.+.|++.|..+.++...+ .++..+|+.++-++ .|++..+.+.+..... ..+.+. +...
T Consensus 17 GKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~-tg~~~~la~~~~~~~rvGkY~V~v~~le~i~~~al~ 95 (179)
T COG1618 17 GKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLA-TGEEGILARVGFSRPRVGKYGVNVEGLEEIAIPALR 95 (179)
T ss_pred cHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEcc-CCceEEEEEcCCCCcccceEEeeHHHHHHHhHHHHH
Confidence 333456778889999987777654433 12556676666664 5888777666542210 011121 1122
Q ss_pred hhhccccEEEEeCCCC----HHHHHHHHHHHHhCCCcEEEeCCCCC-CCCchhhccCCcEE
Q 023130 196 EVVKKAGIVLLQREIP----DSVNIQVAKAARSAGVPVIFDAGGMD-APIPQELLNFIDIL 251 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~----~~~~~~~~~~a~~~g~~v~~D~~~~~-~~~~~~ll~~~dil 251 (287)
.+++.+|++.++---| ...+.++++..-+.+.|+++-..-.. .++.+.+-+.-++.
T Consensus 96 rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~ 156 (179)
T COG1618 96 RALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVY 156 (179)
T ss_pred HHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHhhhcCCEE
Confidence 3456689999984222 23467778888778888777664221 34555555444433
No 119
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=54.48 E-value=1.4e+02 Score=26.85 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=53.8
Q ss_pred CCcEEEEeecCCchHHHHHHHHHhCCCCC---CceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhH
Q 023130 119 HPTYFVGQVGEDANGKLITDALSGCGVRL---DYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDL 195 (287)
Q Consensus 119 ~~~~lig~vG~D~~G~~i~~~L~~~gVd~---~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~ 195 (287)
.++.++|.-|. .|..+.+.|.+.+-.. ..+.... ..+..+.+ .|. .+.+ .++..
T Consensus 2 ~~V~IvGAtG~--vG~~l~~lL~~~~hp~~~l~~l~s~~----~~g~~l~~---~g~-~i~v----------~d~~~--- 58 (334)
T PRK14874 2 YNVAVVGATGA--VGREMLNILEERNFPVDKLRLLASAR----SAGKELSF---KGK-ELKV----------EDLTT--- 58 (334)
T ss_pred CEEEEECCCCH--HHHHHHHHHHhCCCCcceEEEEEccc----cCCCeeee---CCc-eeEE----------eeCCH---
Confidence 35666776665 7999999999866543 3333222 23333321 121 1111 11211
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
..+...|+++++ .+.....+++..+.+.|+ +++|.++.
T Consensus 59 ~~~~~vDvVf~A--~g~g~s~~~~~~~~~~G~-~VIDlS~~ 96 (334)
T PRK14874 59 FDFSGVDIALFS--AGGSVSKKYAPKAAAAGA-VVIDNSSA 96 (334)
T ss_pred HHHcCCCEEEEC--CChHHHHHHHHHHHhCCC-EEEECCch
Confidence 124578998875 355667777777777787 89998864
No 120
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=53.54 E-value=81 Score=28.67 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=55.5
Q ss_pred cCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHh
Q 023130 117 LSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLE 196 (287)
Q Consensus 117 LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~ 196 (287)
-..++.++|.-|- .|..+.+.|.+.+-....+..... ....|..+.+ .| ... ..+++.. +
T Consensus 6 ~~~kVaVvGAtG~--vG~eLlrlL~~~~hP~~~l~~las-~rsaGk~~~~---~~-~~~----------~v~~~~~---~ 65 (344)
T PLN02383 6 NGPSVAIVGVTGA--VGQEFLSVLTDRDFPYSSLKMLAS-ARSAGKKVTF---EG-RDY----------TVEELTE---D 65 (344)
T ss_pred CCCeEEEEcCCCh--HHHHHHHHHHhCCCCcceEEEEEc-cCCCCCeeee---cC-cee----------EEEeCCH---H
Confidence 3456777777666 799999999886544332322110 1122333222 11 111 1122222 3
Q ss_pred hhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 197 VVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 197 ~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
.+..+|+++++. +.+...+++..+.+.|+ +++|.++.
T Consensus 66 ~~~~~D~vf~a~--p~~~s~~~~~~~~~~g~-~VIDlS~~ 102 (344)
T PLN02383 66 SFDGVDIALFSA--GGSISKKFGPIAVDKGA-VVVDNSSA 102 (344)
T ss_pred HHcCCCEEEECC--CcHHHHHHHHHHHhCCC-EEEECCch
Confidence 356789998853 55667788888877776 78898864
No 121
>PRK08114 cystathionine beta-lyase; Provisional
Probab=52.84 E-value=96 Score=28.78 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=54.8
Q ss_pred ceeecCchHHHHHHHHHHcCC-CcEEEEeecCCchH---HHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCee
Q 023130 99 SQTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANG---KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNS 174 (287)
Q Consensus 99 ~~~~~GG~a~N~A~~la~LG~-~~~lig~vG~D~~G---~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~ 174 (287)
....+.|.++..+..++-+.. +..+++ ++.+| ..+.+.|++.||++.++. . . +.
T Consensus 80 a~~~~SGmaAi~~~~~~ll~~GD~Vv~~---~~~Yg~t~~l~~~~l~~~Gi~v~~vd--~--~------------d~--- 137 (395)
T PRK08114 80 CALYPCGAAAVANAILAFVEQGDHVLMT---GTAYEPTQDFCSKILSKLGVTTTWFD--P--L------------IG--- 137 (395)
T ss_pred EEEEhHHHHHHHHHHHHHcCCCCEEEEe---CCCcHHHHHHHHHHHHhcCcEEEEEC--C--C------------CH---
Confidence 345777888888777766653 333333 33444 334456788888765431 1 0 00
Q ss_pred EEEeCCCCCCCCCcccCchhHhhhc-cccEEEEeCCCCH----HHHHHHHHHHHhC--CCcEEEeCCCC
Q 023130 175 IIIVGGTNMSCWPEKFGDEDLEVVK-KAGIVLLQREIPD----SVNIQVAKAARSA--GVPVIFDAGGM 236 (287)
Q Consensus 175 ~~~~~ga~~~~~~~~l~~~~~~~l~-~a~~v~~~g~~~~----~~~~~~~~~a~~~--g~~v~~D~~~~ 236 (287)
+.+ .+.++ +.++|+++....+ .-+.++.+.|+++ |+.+++|-...
T Consensus 138 -------------~~l----~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a 189 (395)
T PRK08114 138 -------------ADI----AKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWA 189 (395)
T ss_pred -------------HHH----HHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCc
Confidence 001 11121 3466766542211 1267788888887 48899998754
No 122
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=50.27 E-value=30 Score=28.33 Aligned_cols=56 Identities=29% Similarity=0.200 Sum_probs=37.1
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEe-CCCCCC-CCchhhccCCcEEecC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD-AGGMDA-PIPQELLNFIDILSPN 254 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D-~~~~~~-~~~~~ll~~~dil~~N 254 (287)
..++++.+....+.+...++++.++++|+++.++ +++... +....+...+|++..+
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 3688888876655555788899999999999987 544321 2222223378887653
No 123
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=50.22 E-value=1.1e+02 Score=25.63 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=47.2
Q ss_pred EEEEeCCCC---HHHHHHHHHHHHhCCCcEEEeCCCCC---CCCchhhccCCcEEec-----CHHHHHhhcCCCCCCHHH
Q 023130 203 IVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMD---APIPQELLNFIDILSP-----NESELGRLTGMPTDSYEQ 271 (287)
Q Consensus 203 ~v~~~g~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~---~~~~~~ll~~~dil~~-----Ne~E~~~l~g~~~~~~~~ 271 (287)
.+.+.|.-| ++.+.++++.+++.|..+.+..++.. .+...+++...|.+.+ +.+....+.|. +.+.
T Consensus 68 ~I~~~GGEPll~~~~~~~li~~~~~~g~~~~i~TNG~~~~~~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~---~~~~ 144 (235)
T TIGR02493 68 GVTFSGGEPLLQPEFLSELFKACKELGIHTCLDTSGFLGGCTEAADELLEYTDLVLLDIKHFNPEKYKKLTGV---SLQP 144 (235)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHCCCCEEEEcCCCCCccHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCC---CcHH
Confidence 455555332 45567899999999999999998742 1234556666676544 45556667774 3445
Q ss_pred HHHHHHHHhh
Q 023130 272 ISEAVVKCHK 281 (287)
Q Consensus 272 ~~~~~~~l~~ 281 (287)
+.+..+.+.+
T Consensus 145 v~~~i~~l~~ 154 (235)
T TIGR02493 145 TLDFAKYLAK 154 (235)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 124
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=50.11 E-value=38 Score=31.13 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecC
Q 023130 215 NIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPN 254 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~N 254 (287)
+..+.+.|+++|+++++|-......+.+++-..+||+.=+
T Consensus 166 ie~ia~iAh~~gvpliVDNT~atpyl~rP~~hGADIVvHS 205 (426)
T COG2873 166 IEAIAEIAHRHGVPLIVDNTFATPYLCRPIEHGADIVVHS 205 (426)
T ss_pred HHHHHHHHHHcCCcEEEecCCCcceecchhhcCCCEEEEe
Confidence 6778889999999999998654334455666667776644
No 125
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=49.66 E-value=32 Score=23.52 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHcCCCcEEEEeecC------CchHHHHHHHHHhCCCCCC
Q 023130 106 KGANQAACGAKLSHPTYFVGQVGE------DANGKLITDALSGCGVRLD 148 (287)
Q Consensus 106 ~a~N~A~~la~LG~~~~lig~vG~------D~~G~~i~~~L~~~gVd~~ 148 (287)
.|.=.|..++++|.+++++..-.. ......+.+.|++.||+..
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEE
Confidence 456678899999999999886332 2357788899999998864
No 126
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=49.05 E-value=42 Score=27.66 Aligned_cols=56 Identities=25% Similarity=0.170 Sum_probs=38.2
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeC-CCCCC-CCchhhcc-CCcEEecC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA-GGMDA-PIPQELLN-FIDILSPN 254 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~-~~~~~-~~~~~ll~-~~dil~~N 254 (287)
..++++.+....+.....++++.++++|+++.++. ++... .....+.. .+|++..+
T Consensus 75 ~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 75 AGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc
Confidence 46888888776665557889999999999999885 43210 11233344 78888775
No 127
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=49.01 E-value=92 Score=29.03 Aligned_cols=79 Identities=13% Similarity=0.132 Sum_probs=52.7
Q ss_pred ccEEEEeCC-CC--HHHHHHHHHHHHhCCCcEEEe-CCCC---CCCCchhhccC-CcEE-----ecCHHHHHhhcCCCCC
Q 023130 201 AGIVLLQRE-IP--DSVNIQVAKAARSAGVPVIFD-AGGM---DAPIPQELLNF-IDIL-----SPNESELGRLTGMPTD 267 (287)
Q Consensus 201 a~~v~~~g~-~~--~~~~~~~~~~a~~~g~~v~~D-~~~~---~~~~~~~ll~~-~dil-----~~Ne~E~~~l~g~~~~ 267 (287)
-+.+.++|. .| ...+.++++.+++.|+++.+. .++. ..+..+.++++ +|.+ ..|.+-...++|.+
T Consensus 74 ~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~gld~v~iSvka~dpe~h~kl~G~~-- 151 (404)
T TIGR03278 74 DTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREWMKDP-- 151 (404)
T ss_pred CCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHhCCC--
Confidence 466777664 22 245789999999999999997 6643 12234566655 6666 45567777889953
Q ss_pred CHHHHHHHHHHHhh
Q 023130 268 SYEQISEAVVKCHK 281 (287)
Q Consensus 268 ~~~~~~~~~~~l~~ 281 (287)
..+.+.+.++.+.+
T Consensus 152 ~a~~ILe~L~~L~e 165 (404)
T TIGR03278 152 TPEASLQCLRRFCE 165 (404)
T ss_pred CHHHHHHHHHHHHh
Confidence 34677777777665
No 128
>PRK07582 cystathionine gamma-lyase; Validated
Probab=47.98 E-value=1.4e+02 Score=27.22 Aligned_cols=54 Identities=22% Similarity=0.124 Sum_probs=27.8
Q ss_pred CceeecCchHHHHHHHHHHcCC-CcEEEEeecCCchHHHHHHHHHhCCCCCCceE
Q 023130 98 TSQTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSGCGVRLDYMN 151 (287)
Q Consensus 98 ~~~~~~GG~a~N~A~~la~LG~-~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~ 151 (287)
+.-...+|..++.+...+.++- +..++..-+-......+...++..|+.+..+.
T Consensus 67 ~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~ 121 (366)
T PRK07582 67 EALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAP 121 (366)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEEC
Confidence 3445677777776665555543 33333321111122333445677888776543
No 129
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=47.01 E-value=43 Score=31.15 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=26.7
Q ss_pred ccEEEEeCCCCH----HHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 201 AGIVLLQREIPD----SVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 201 a~~v~~~g~~~~----~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
.++|++.....+ .-+.++.+.|+++|+.|++|-...
T Consensus 163 t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~ 202 (409)
T KOG0053|consen 163 TKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFG 202 (409)
T ss_pred ceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcC
Confidence 777887653221 127888999999999999998754
No 130
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=46.92 E-value=1.6e+02 Score=26.69 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=53.3
Q ss_pred CcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhc
Q 023130 120 PTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVK 199 (287)
Q Consensus 120 ~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~ 199 (287)
++.++|.-|. .|..+.+.|.+.+....-+..... .... |++- ...+.. +.-+++.. ..+.
T Consensus 6 ~IaIvGATG~--vG~eLlrlL~~~~hP~~~l~~v~s-~~~a----------G~~l--~~~~~~--l~~~~~~~---~~~~ 65 (336)
T PRK05671 6 DIAVVGATGT--VGEALVQILEERDFPVGTLHLLAS-SESA----------GHSV--PFAGKN--LRVREVDS---FDFS 65 (336)
T ss_pred EEEEEccCCH--HHHHHHHHHhhCCCCceEEEEEEC-cccC----------CCee--ccCCcc--eEEeeCCh---HHhc
Confidence 4556666554 799999999976654433222210 1112 3221 122211 11122221 2256
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD 237 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 237 (287)
++|++++.. |.+...+++..+.+.|+ .++|.++..
T Consensus 66 ~vD~vFla~--p~~~s~~~v~~~~~~G~-~VIDlS~~f 100 (336)
T PRK05671 66 QVQLAFFAA--GAAVSRSFAEKARAAGC-SVIDLSGAL 100 (336)
T ss_pred CCCEEEEcC--CHHHHHHHHHHHHHCCC-eEEECchhh
Confidence 789999864 55677888888888887 688988653
No 131
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=44.14 E-value=74 Score=22.35 Aligned_cols=36 Identities=6% Similarity=0.188 Sum_probs=30.1
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
..+.+|++....++.+...+...|+.+++|+.+..+
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCC
Confidence 357889999888888899999999999999965543
No 132
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=44.10 E-value=1.2e+02 Score=27.85 Aligned_cols=96 Identities=16% Similarity=0.125 Sum_probs=55.1
Q ss_pred CcEEEEeecCCchHHHHHHHHH-hCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhh
Q 023130 120 PTYFVGQVGEDANGKLITDALS-GCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVV 198 (287)
Q Consensus 120 ~~~lig~vG~D~~G~~i~~~L~-~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l 198 (287)
++.++|.-|- .|+.+++.|. +.......+..-. ....+ |.. . .+.+... .-+++.+ .+.+
T Consensus 2 ~VavvGATG~--VG~~ll~~L~~e~~fp~~~~~~~s--s~~s~---------g~~-~-~f~~~~~--~v~~~~~--~~~~ 62 (366)
T TIGR01745 2 NVGLVGWRGM--VGSVLMQRMQEERDFDAIRPVFFS--TSQLG---------QAA-P-SFGGTTG--TLQDAFD--IDAL 62 (366)
T ss_pred eEEEEcCcCH--HHHHHHHHHHhCCCCccccEEEEE--chhhC---------CCc-C-CCCCCcc--eEEcCcc--cccc
Confidence 3456666555 8999999898 6677644444332 11111 111 1 1111110 1122211 1245
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCc-EEEeCCCC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVP-VIFDAGGM 236 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~-v~~D~~~~ 236 (287)
.+.|+++++. +.+...++...+.+.|.+ +++|.++.
T Consensus 63 ~~vDivffa~--g~~~s~~~~p~~~~aG~~~~VIDnSSa 99 (366)
T TIGR01745 63 KALDIIITCQ--GGDYTNEIYPKLRESGWQGYWIDAASS 99 (366)
T ss_pred cCCCEEEEcC--CHHHHHHHHHHHHhCCCCeEEEECChh
Confidence 7789998864 556788888889999974 78888754
No 133
>PRK13018 cell division protein FtsZ; Provisional
Probab=43.68 E-value=67 Score=29.66 Aligned_cols=131 Identities=21% Similarity=0.204 Sum_probs=67.5
Q ss_pred eecCchHHHHHHHHHHcCCC-cEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeC
Q 023130 101 TLAGGKGANQAACGAKLSHP-TYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG 179 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG~~-~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ 179 (287)
.-.||+|.|+.-.+.+.|.+ +.++. +-.|. +.|.....+.. +..-+ . .|. . ....|++..
T Consensus 34 iGvGGaG~N~v~~m~~~~~~~v~~ia-iNTD~------q~L~~~~a~~k-i~iG~--~-~t~-G---~GaG~dp~~---- 94 (378)
T PRK13018 34 VGCGGAGNNTINRLYEIGIEGAETIA-INTDA------QHLAMIKADKK-ILIGK--S-LTR-G---LGAGGDPEV---- 94 (378)
T ss_pred EEeCCcHHHHHHHHHHcCCCCceEEE-EECCH------HHHhcCCCCcE-EecCC--c-cCC-C---CCCCCChHH----
Confidence 34799999999999999864 55554 55663 56665555533 22221 1 000 0 000111110
Q ss_pred CCCCCCCCcccCchhHhhhccccEEEEeCCC----CHHHHHHHHHHHHhCCCcEE---EeCCCCC--------CCCchhh
Q 023130 180 GTNMSCWPEKFGDEDLEVVKKAGIVLLQREI----PDSVNIQVAKAARSAGVPVI---FDAGGMD--------APIPQEL 244 (287)
Q Consensus 180 ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~----~~~~~~~~~~~a~~~g~~v~---~D~~~~~--------~~~~~~l 244 (287)
|... .++..++..+.++.+|.+++...+ -..+...+++.+++.+..++ .-|.... ..-++.+
T Consensus 95 G~~a---aee~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L 171 (378)
T PRK13018 95 GRKA---AEESRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERL 171 (378)
T ss_pred HHHH---HHHHHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHH
Confidence 0000 011112344668899998875433 23445667788888886533 2332110 0124567
Q ss_pred ccCCcEEec
Q 023130 245 LNFIDILSP 253 (287)
Q Consensus 245 l~~~dil~~ 253 (287)
...+|.+++
T Consensus 172 ~e~~D~viv 180 (378)
T PRK13018 172 REAADTVIV 180 (378)
T ss_pred HHhCCEEEE
Confidence 777775543
No 134
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=43.50 E-value=2.3e+02 Score=24.99 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=33.1
Q ss_pred eeecCchHHHHHHHHHHcCC-CcEEEEeecCCchHHHHHHHHHhCCC
Q 023130 100 QTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSGCGV 145 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~LG~-~~~lig~vG~D~~G~~i~~~L~~~gV 145 (287)
-.-+||.+--++.+|+.+|. +.+++-+- ..-++.+.+.+.+.+.
T Consensus 131 ilGAGGAarAv~~aL~~~g~~~i~V~NRt--~~ra~~La~~~~~~~~ 175 (283)
T COG0169 131 ILGAGGAARAVAFALAEAGAKRITVVNRT--RERAEELADLFGELGA 175 (283)
T ss_pred EECCcHHHHHHHHHHHHcCCCEEEEEeCC--HHHHHHHHHHhhhccc
Confidence 35689999999999999996 45555542 2357888888888775
No 135
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=42.89 E-value=2e+02 Score=26.63 Aligned_cols=135 Identities=20% Similarity=0.164 Sum_probs=77.8
Q ss_pred eecCchHHHHHHHHHHcC-CCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeC
Q 023130 101 TLAGGKGANQAACGAKLS-HPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVG 179 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG-~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ 179 (287)
....|+++--|...+-+. .+-.++..-|. ||+.+.+.++.+|.++..+.... |+
T Consensus 61 l~gsGt~amEAav~sl~~pgdkVLv~~nG~--FG~R~~~ia~~~g~~v~~~~~~w----------------g~------- 115 (383)
T COG0075 61 LSGSGTLAMEAAVASLVEPGDKVLVVVNGK--FGERFAEIAERYGAEVVVLEVEW----------------GE------- 115 (383)
T ss_pred EcCCcHHHHHHHHHhccCCCCeEEEEeCCh--HHHHHHHHHHHhCCceEEEeCCC----------------CC-------
Confidence 345566666666555554 23445555454 99999999999999986443321 21
Q ss_pred CCCCCCCCcccCchhHhhhccccEEEEe-CCCCH---HHHHHHHHHHHhCCCcEEEeCCCCC-------CCCc-------
Q 023130 180 GTNMSCWPEKFGDEDLEVVKKAGIVLLQ-REIPD---SVNIQVAKAARSAGVPVIFDAGGMD-------APIP------- 241 (287)
Q Consensus 180 ga~~~~~~~~l~~~~~~~l~~a~~v~~~-g~~~~---~~~~~~~~~a~~~g~~v~~D~~~~~-------~~~~------- 241 (287)
..+++++. +.++.-...++|.+. .+.+. .-+.++.+.+|++|..+++|.-... .+|-
T Consensus 116 ----~v~p~~v~-~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itg 190 (383)
T COG0075 116 ----AVDPEEVE-EALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITG 190 (383)
T ss_pred ----CCCHHHHH-HHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEec
Confidence 11233332 122212234444432 12221 1277888999999999999984221 1111
Q ss_pred -h---hhccCCcEEecCHHHHHhhcCCC
Q 023130 242 -Q---ELLNFIDILSPNESELGRLTGMP 265 (287)
Q Consensus 242 -~---~ll~~~dil~~Ne~E~~~l~g~~ 265 (287)
+ ..-+..-++..|++.++.+.+.+
T Consensus 191 SQK~l~~PPGla~v~~S~~a~e~~~~~~ 218 (383)
T COG0075 191 SQKALGAPPGLAFVAVSERALEAIEERK 218 (383)
T ss_pred CchhccCCCccceeEECHHHHHHHhcCC
Confidence 1 12346778888988888887653
No 136
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=42.77 E-value=66 Score=30.07 Aligned_cols=142 Identities=15% Similarity=0.169 Sum_probs=79.4
Q ss_pred HHcC-CCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCce-EEEEEcCCCCeeEEEeCCCCCCCCCcccCc
Q 023130 115 AKLS-HPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGH-AVVMLQSDGQNSIIIVGGTNMSCWPEKFGD 192 (287)
Q Consensus 115 a~LG-~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~-~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~ 192 (287)
+.+| .+-.=+-.+|....|..+...|.+.|+.- +.+.. .|-. +.-+...-| +. ...+ +
T Consensus 171 ~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~--i~IaN----RT~erA~~La~~~~---------~~----~~~l-~ 230 (414)
T COG0373 171 RIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKK--ITIAN----RTLERAEELAKKLG---------AE----AVAL-E 230 (414)
T ss_pred HHhcccccCeEEEEcccHHHHHHHHHHHhCCCCE--EEEEc----CCHHHHHHHHHHhC---------Ce----eecH-H
Confidence 3456 34444455677779999999999999864 44432 2211 111111111 00 1112 2
Q ss_pred hhHhhhccccEEEEeCCCC-----HHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCC
Q 023130 193 EDLEVVKKAGIVLLQREIP-----DSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTD 267 (287)
Q Consensus 193 ~~~~~l~~a~~v~~~g~~~-----~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~ 267 (287)
+..+.+..+|+|+.+..-| .+.+..+++.-+ + .+++|.+-+ ++.....-...++...|-++++.+......
T Consensus 231 el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~--~-~livDiavP-Rdie~~v~~l~~v~l~~iDDL~~iv~~n~~ 306 (414)
T COG0373 231 ELLEALAEADVVISSTSAPHPIITREMVERALKIRK--R-LLIVDIAVP-RDVEPEVGELPNVFLYTIDDLEEIVEENLE 306 (414)
T ss_pred HHHHhhhhCCEEEEecCCCccccCHHHHHHHHhccc--C-eEEEEecCC-CCCCccccCcCCeEEEehhhHHHHHHHhHH
Confidence 3447788999998875433 232333332221 2 699999754 566666666777888888888887654333
Q ss_pred CHHHHHHHHHHHh
Q 023130 268 SYEQISEAVVKCH 280 (287)
Q Consensus 268 ~~~~~~~~~~~l~ 280 (287)
..++.+++++.+.
T Consensus 307 ~R~~~~~~ae~iI 319 (414)
T COG0373 307 ARKEEAAKAEAII 319 (414)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 137
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=42.52 E-value=50 Score=27.59 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=26.6
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 023130 202 GIVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 202 ~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (287)
-+++++-++|++.+.++++.+++.|+++++--
T Consensus 92 ~~vFVSfSMP~~sLk~Ll~qa~~~G~p~VlRG 123 (212)
T PRK13730 92 ALYFVSFSIPEEGLKRMLGETRHYGIPATLRG 123 (212)
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHhCCcEEEeC
Confidence 34566778899999999999999999999854
No 138
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=41.60 E-value=42 Score=29.11 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=42.8
Q ss_pred hhccccEEEEeCCC-CHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCH
Q 023130 197 VVKKAGIVLLQREI-PDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNE 255 (287)
Q Consensus 197 ~l~~a~~v~~~g~~-~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne 255 (287)
.-.+||++++.... +.+.+.++++.+++.|..+.+|..... +.....-..+|++-.|.
T Consensus 130 ~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~-E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 130 RAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEE-ELERALKLGAPLIGINN 188 (260)
T ss_pred HHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHH-HHHHHHHcCCCEEEECC
Confidence 34578999987765 566899999999999999999997652 32222334678887775
No 139
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=41.02 E-value=2.2e+02 Score=25.75 Aligned_cols=92 Identities=21% Similarity=0.332 Sum_probs=51.4
Q ss_pred cEEEEeecCCchHHHHHHHHHhCCCCCCceEEc-cCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhc
Q 023130 121 TYFVGQVGEDANGKLITDALSGCGVRLDYMNVV-KDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVK 199 (287)
Q Consensus 121 ~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~-~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~ 199 (287)
+.++|.-| ..|..+.+.|.+.+-....+... . ....+..+.+. |. .... .++. .+.+.
T Consensus 2 VaIvGAtG--~vG~eLi~lL~~~~hp~~~l~~~as--~~~~g~~~~~~---~~-~~~~----------~~~~---~~~~~ 60 (339)
T TIGR01296 2 VAIVGATG--AVGQEMLKILEERNFPIDKLVLLAS--DRSAGRKVTFK---GK-ELEV----------NEAK---IESFE 60 (339)
T ss_pred EEEEcCCC--HHHHHHHHHHHhCCCChhhEEEEec--cccCCCeeeeC---Ce-eEEE----------EeCC---hHHhc
Confidence 34555544 48999999999876554433311 1 11223333211 11 1111 1122 13356
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+.|+++++. +.....+.+..+.+.|+ +++|.+..
T Consensus 61 ~~D~v~~a~--g~~~s~~~a~~~~~~G~-~VID~ss~ 94 (339)
T TIGR01296 61 GIDIALFSA--GGSVSKEFAPKAAKCGA-IVIDNTSA 94 (339)
T ss_pred CCCEEEECC--CHHHHHHHHHHHHHCCC-EEEECCHH
Confidence 789998864 45556777777777787 68898753
No 140
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=40.36 E-value=86 Score=22.75 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=31.3
Q ss_pred ecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEe
Q 023130 127 VGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIV 178 (287)
Q Consensus 127 vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~ 178 (287)
+.+...=+.+.+.|++.|+......... ....+..+.+.|++|.+-.+.+
T Consensus 68 v~~~~dv~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 68 VRSEEDLDKAEAFFQELGLPTEWVEAGE--EPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred CCCHHHHHHHHHHHHHcCCCcccccCCc--CCCCccEEEEECCCCCEEEEEe
Confidence 3333344568899999999875431111 1133467888999998865543
No 141
>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS
Probab=40.33 E-value=19 Score=26.09 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHcCCCcEEEEeecCC-chHHHHHHHHHhCCCCC
Q 023130 105 GKGANQAACGAKLSHPTYFVGQVGED-ANGKLITDALSGCGVRL 147 (287)
Q Consensus 105 G~a~N~A~~la~LG~~~~lig~vG~D-~~G~~i~~~L~~~gVd~ 147 (287)
|++-|+|.+.-.-|..+.+|--+|.| ..|+. +++++-|.
T Consensus 10 GKGq~Va~GveaAGG~aivipG~~ADmklGdv----M~~e~Ad~ 49 (115)
T PF14272_consen 10 GKGQKVAKGVEAAGGKAIVIPGVGADMKLGDV----MKKENADF 49 (115)
T ss_pred cCcchHhhHHHhcCCeEEEecCccccchHHHH----HHhhCCCc
Confidence 67899999999999999999999998 55654 44455444
No 142
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.10 E-value=1.2e+02 Score=28.29 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=28.4
Q ss_pred cCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCC
Q 023130 103 AGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVR 146 (287)
Q Consensus 103 ~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd 146 (287)
.|+.|.-.|..|+..|.++.++..-..+.. ....+.|.+.|+.
T Consensus 13 ~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~~l~~~~~~ 55 (450)
T PRK14106 13 AGVSGLALAKFLKKLGAKVILTDEKEEDQL-KEALEELGELGIE 55 (450)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchHHH-HHHHHHHHhcCCE
Confidence 566778888899999999887765322222 2334556677765
No 143
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=38.19 E-value=1.8e+02 Score=22.19 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=26.3
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (287)
+.+..+++++.+... ......+.+.+++++++++.-.
T Consensus 85 ~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~ 121 (143)
T cd01483 85 DFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred HHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEc
Confidence 557789988876544 4456777888899998765533
No 144
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=38.13 E-value=66 Score=23.09 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeE
Q 023130 133 GKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSI 175 (287)
Q Consensus 133 G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~ 175 (287)
=+.+.+.+.+.|++...-.. ..+.|....+.|++|.+-.
T Consensus 73 ~~~~~~~~~~~g~~v~~~~~----~~~~g~~~~~~DPdGn~ie 111 (114)
T cd07261 73 VDALYAEWQAKGVKIIQEPT----EMDFGYTFVALDPDGHRLR 111 (114)
T ss_pred HHHHHHHHHHCCCeEecCcc----ccCCccEEEEECCCCCEEE
Confidence 36788899999988754322 2356778889999998744
No 145
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=37.74 E-value=1.6e+02 Score=26.80 Aligned_cols=123 Identities=6% Similarity=-0.035 Sum_probs=63.4
Q ss_pred eecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEE
Q 023130 126 QVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVL 205 (287)
Q Consensus 126 ~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~ 205 (287)
.+|....|+...+.|.+.|+.- +.+.. .|.. + .-+ +++..+..+....+|+++
T Consensus 179 vIGaGem~~l~a~~L~~~g~~~--i~v~n----Rt~~----------~--~~~---------~~~~~~~~~~~~~~DvVI 231 (338)
T PRK00676 179 FIGYSEINRKVAYYLQRQGYSR--ITFCS----RQQL----------T--LPY---------RTVVREELSFQDPYDVIF 231 (338)
T ss_pred EEcccHHHHHHHHHHHHcCCCE--EEEEc----CCcc----------c--cch---------hhhhhhhhhcccCCCEEE
Confidence 3555669999999999999853 44433 3321 0 000 111111224456789998
Q ss_pred Ee----CCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhhcCCCCCCHHHHHHHHHHHh
Q 023130 206 LQ----REIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRLTGMPTDSYEQISEAVVKCH 280 (287)
Q Consensus 206 ~~----g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l~g~~~~~~~~~~~~~~~l~ 280 (287)
.+ +...+-...+.++. .-.++++|.+-+ ++. ++.....++...|-+++..+.........+....++.+.
T Consensus 232 s~t~~Tas~~p~i~~~~~~~---~~~r~~iDLAvP-RdI-d~v~~~~~v~Ly~iDdL~~i~~~n~~~R~~~~~~ae~iI 305 (338)
T PRK00676 232 FGSSESAYAFPHLSWESLAD---IPDRIVFDFNVP-RTF-PWSETPFPHRYLDMDFISEWVQKHLQCRKEVNNKHKLSL 305 (338)
T ss_pred EcCCcCCCCCceeeHHHHhh---ccCcEEEEecCC-CCC-ccccccCCcEEEEhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 22212112222222 122599999754 333 223333556677888888876643333334444444443
No 146
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=37.47 E-value=2e+02 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=24.2
Q ss_pred ecCchHHHHHHHHHHcC-CCcEEEEeecCCchHHHHHHHHH
Q 023130 102 LAGGKGANQAACGAKLS-HPTYFVGQVGEDANGKLITDALS 141 (287)
Q Consensus 102 ~~GG~a~N~A~~la~LG-~~~~lig~vG~D~~G~~i~~~L~ 141 (287)
-.||.|.-++.+++.+| .++.++++-.+ -.+.+.+.+.
T Consensus 130 GaGg~a~ai~~aL~~~g~~~V~v~~R~~~--~a~~l~~~~~ 168 (278)
T PRK00258 130 GAGGAARAVILPLLDLGVAEITIVNRTVE--RAEELAKLFG 168 (278)
T ss_pred cCcHHHHHHHHHHHHcCCCEEEEEeCCHH--HHHHHHHHhh
Confidence 36888888888899888 46666655321 2344444443
No 147
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=37.33 E-value=1.4e+02 Score=25.44 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.8
Q ss_pred cccEEEEeCCC--CHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 200 KAGIVLLQREI--PDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 200 ~a~~v~~~g~~--~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
..|.+++.|+. ..+.+.++++..|+..+|+++-|+..
T Consensus 27 gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 27 GTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNP 65 (223)
T ss_pred CCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCc
Confidence 46999998865 45668888899999999999988743
No 148
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.21 E-value=1.7e+02 Score=24.84 Aligned_cols=100 Identities=14% Similarity=0.206 Sum_probs=56.0
Q ss_pred EEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccE
Q 023130 124 VGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGI 203 (287)
Q Consensus 124 ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~ 203 (287)
++.+.+..+|+.+.+.|...|.....+.+.. . + ++-. .. .+.+++.++.+-.+|+
T Consensus 4 i~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~----~---------P-e~~~-------~f----ie~P~~~Lp~~~e~Di 58 (224)
T COG1810 4 ILVLTDGEYGKRAVNNLACKGFKNQFVAVKE----Y---------P-EELP-------DF----IEEPEDLLPKLPEADI 58 (224)
T ss_pred EEEEeeccchHHHHHhHhhhccccceEEEEe----c---------c-cccc-------ch----hhCHHHhcCCCCCCCE
Confidence 3455666799999999986664444443322 1 1 0000 00 0111222233356888
Q ss_pred EEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCc
Q 023130 204 VLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFID 249 (287)
Q Consensus 204 v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~d 249 (287)
++.-+ +.++....+.+.|...|..-++=+.+....+.+++-+.++
T Consensus 59 ~va~~-lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~ 103 (224)
T COG1810 59 VVAYG-LHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCE 103 (224)
T ss_pred EEEec-cCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhh
Confidence 87653 5556778888888888887777776654444455554444
No 149
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=36.86 E-value=94 Score=21.72 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=28.2
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (287)
.+.+|++....++.....+...|+++++|++.-.
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5788888888888888888889999999886644
No 150
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=36.69 E-value=2.6e+02 Score=25.32 Aligned_cols=95 Identities=16% Similarity=0.301 Sum_probs=52.3
Q ss_pred CCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhh
Q 023130 119 HPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVV 198 (287)
Q Consensus 119 ~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l 198 (287)
.++.++|.-| ..|..+++.|.+..-...-+..... ....|..+.+ .+.+..+ +++.+ ..+
T Consensus 5 ~~vaIvGATG--~vG~ellrlL~~~~hP~~~l~~laS-~~saG~~~~~------------~~~~~~v--~~~~~---~~~ 64 (336)
T PRK08040 5 WNIALLGATG--AVGEALLELLAERQFPVGELYALAS-EESAGETLRF------------GGKSVTV--QDAAE---FDW 64 (336)
T ss_pred CEEEEEccCC--HHHHHHHHHHhcCCCCceEEEEEEc-cCcCCceEEE------------CCcceEE--EeCch---hhc
Confidence 3555566554 4899999999984322222221110 2233433332 1111110 11211 223
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
.+.|+++++ .|.+...+++..+.+.|+ +++|.+..
T Consensus 65 ~~~Dvvf~a--~p~~~s~~~~~~~~~~g~-~VIDlS~~ 99 (336)
T PRK08040 65 SQAQLAFFV--AGREASAAYAEEATNAGC-LVIDSSGL 99 (336)
T ss_pred cCCCEEEEC--CCHHHHHHHHHHHHHCCC-EEEECChH
Confidence 578999885 466777888888877787 68898854
No 151
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=36.66 E-value=61 Score=23.03 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 104 GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
+|.+...+..+...|.++.+.+.+|.. .+..|++.||..
T Consensus 47 ~~~~~~~~~~l~~~~v~~vi~~~iG~~-----a~~~l~~~gI~v 85 (102)
T cd00562 47 GGEGKLAARLLALEGCDAVLVGGIGGP-----AAAKLEAAGIKP 85 (102)
T ss_pred CccchHHHHHHHHCCCcEEEEcccCcc-----HHHHHHHcCCEE
Confidence 466788999999999999999988764 567888899886
No 152
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=36.34 E-value=1.2e+02 Score=21.42 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.9
Q ss_pred Hhhhc--cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 195 LEVVK--KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 195 ~~~l~--~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
...++ .+..+++.....+..+..+...|.++++++++-++
T Consensus 22 ~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s 63 (84)
T PRK13600 22 LKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKS 63 (84)
T ss_pred HHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 34454 47888898887777888999999999999988665
No 153
>PRK08818 prephenate dehydrogenase; Provisional
Probab=36.30 E-value=2.4e+02 Score=25.92 Aligned_cols=40 Identities=8% Similarity=0.205 Sum_probs=26.9
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhC-----CCcEEEeCCCCC
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSA-----GVPVIFDAGGMD 237 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~-----g~~v~~D~~~~~ 237 (287)
+.+.++|+++++ .|...+.++++..... .-.++.|.++..
T Consensus 47 ~~v~~aDlVila--vPv~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 47 TLLQRADVLIFS--APIRHTAALIEEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred HHhcCCCEEEEe--CCHHHHHHHHHHHhhhhcCCCCCeEEEECCCCc
Confidence 557889999996 4555566666655432 234889998654
No 154
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=36.04 E-value=2.8e+02 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCcEEEeCCC
Q 023130 215 NIQVAKAARSAGVPVIFDAGG 235 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~ 235 (287)
+.++++.|+++|+++++|-..
T Consensus 165 l~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 165 IAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHHHHHHHcCCEEEEECCC
Confidence 577888888899999998864
No 155
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=34.76 E-value=99 Score=21.58 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=30.5
Q ss_pred HHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCC
Q 023130 111 AACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (287)
Q Consensus 111 A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~g 144 (287)
+...+++|.+++|.++-++|-..+.+.+.|.+.|
T Consensus 27 ~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 27 AAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred HHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 4456799999999999999999999999999887
No 156
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=34.30 E-value=77 Score=29.43 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=39.5
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCC--CCCchhhccCCcEEec
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD--APIPQELLNFIDILSP 253 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~--~~~~~~ll~~~dil~~ 253 (287)
.++++.+.++...+.+.++++.++++|+.+.+|.-... .+..+++...+|++..
T Consensus 250 GAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vll 305 (391)
T PRK13307 250 TADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVEL 305 (391)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEE
Confidence 57888888777777789999999999999999854432 1334555667776633
No 157
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=34.27 E-value=1.1e+02 Score=22.32 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEE
Q 023130 133 GKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII 177 (287)
Q Consensus 133 G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~ 177 (287)
=+.+.+.|++.|+......... ....+..+.+.|++|.+--+.
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~~~DPdG~~iE~~ 117 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGE--LPGVGRRVRFQLPSGHTMELY 117 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCC--CCCCceEEEEECCCCCEEEEE
Confidence 3568889999999864221111 223467788899999875543
No 158
>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=34.09 E-value=28 Score=25.28 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHcCCCcEEEEeecCC-chHHHHHHHHHhCC
Q 023130 105 GKGANQAACGAKLSHPTYFVGQVGED-ANGKLITDALSGCG 144 (287)
Q Consensus 105 G~a~N~A~~la~LG~~~~lig~vG~D-~~G~~i~~~L~~~g 144 (287)
|++-|+|.+.-.-|.++..|--++.| ..|+...+.-...|
T Consensus 10 GkGq~Va~Gve~AGg~aiVipG~~ADmklGdVM~~e~Ad~G 50 (115)
T TIGR03577 10 GKGQKVAKGVEAAGGRAVVIPGMAADMKLGDVMKQENADLG 50 (115)
T ss_pred cCcchhhhhHHhcCCeEEEecCccccchHHHHHhhhcCccc
Confidence 67899999999999999999999988 56655444333333
No 159
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=34.02 E-value=47 Score=28.09 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=36.0
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcE--EEeCCCCCCCCchhhccCCcEEe
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPV--IFDAGGMDAPIPQELLNFIDILS 252 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v--~~D~~~~~~~~~~~ll~~~dil~ 252 (287)
+++++.+..+ ......+.++..|+.|++. +++|.-. -+..+.++..+|++.
T Consensus 84 gad~It~H~E-~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp-~~~i~~~l~~vD~Vl 136 (220)
T COG0036 84 GADIITFHAE-ATEHIHRTIQLIKELGVKAGLVLNPATP-LEALEPVLDDVDLVL 136 (220)
T ss_pred CCCEEEEEec-cCcCHHHHHHHHHHcCCeEEEEECCCCC-HHHHHHHHhhCCEEE
Confidence 4788877665 2234788899999999875 5566533 355678888888774
No 160
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=33.81 E-value=88 Score=29.07 Aligned_cols=99 Identities=20% Similarity=0.240 Sum_probs=58.7
Q ss_pred ceeecCchHHHHHHHHHHcCC-CcEEEEeecCCchH---HHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCee
Q 023130 99 SQTLAGGKGANQAACGAKLSH-PTYFVGQVGEDANG---KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNS 174 (287)
Q Consensus 99 ~~~~~GG~a~N~A~~la~LG~-~~~lig~vG~D~~G---~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~ 174 (287)
...++.|.++-.+..++-+.. +..++. +|.|| +.+...|++.||++.++ ++ . +.+
T Consensus 81 ~~afsSGmaAI~~~~l~ll~~GD~vl~~---~~~YG~t~~~~~~~l~~~gi~~~~~--d~--~------------~~~-- 139 (396)
T COG0626 81 AFAFSSGMAAISTALLALLKAGDHVLLP---DDLYGGTYRLFEKILQKFGVEVTFV--DP--G------------DDE-- 139 (396)
T ss_pred EEEecCcHHHHHHHHHHhcCCCCEEEec---CCccchHHHHHHHHHHhcCeEEEEE--CC--C------------ChH--
Confidence 456788888888877776642 333322 33344 56666778888887643 11 0 100
Q ss_pred EEEeCCCCCCCCCcccCchhHhh-h-ccccEEEEeCCCCH----HHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 175 IIIVGGTNMSCWPEKFGDEDLEV-V-KKAGIVLLQREIPD----SVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 175 ~~~~~ga~~~~~~~~l~~~~~~~-l-~~a~~v~~~g~~~~----~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
...+. . .+.++++++....+ .-+.++.+.|+++|+.+++|-.+.
T Consensus 140 ------------------~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfa 189 (396)
T COG0626 140 ------------------ALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFA 189 (396)
T ss_pred ------------------HHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcc
Confidence 11111 2 25777777653221 127788889999998899988654
No 161
>PRK05968 hypothetical protein; Provisional
Probab=33.51 E-value=1.4e+02 Score=27.55 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=27.4
Q ss_pred hccccEEEEeCC----CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 023130 198 VKKAGIVLLQRE----IPDSVNIQVAKAARSAGVPVIFDAGG 235 (287)
Q Consensus 198 l~~a~~v~~~g~----~~~~~~~~~~~~a~~~g~~v~~D~~~ 235 (287)
+.+.++++++.. ....-+.++.+.|+++|+++++|-..
T Consensus 145 i~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 145 LPGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred cccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 345677777542 22345788899999999999999864
No 162
>PRK06683 hypothetical protein; Provisional
Probab=33.47 E-value=1.2e+02 Score=21.25 Aligned_cols=35 Identities=9% Similarity=0.102 Sum_probs=28.7
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (287)
..+.+|++....++.+...+...|+.+++|+..-.
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 35788888888888888888899999999886654
No 163
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.43 E-value=2.2e+02 Score=21.69 Aligned_cols=85 Identities=13% Similarity=0.233 Sum_probs=55.4
Q ss_pred eecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEE
Q 023130 126 QVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVL 205 (287)
Q Consensus 126 ~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~ 205 (287)
-||-. +--.+.+.|++.|+|+-..-+.+ .++ +.|-|-. .+++.....+..+.+++++
T Consensus 19 EVGiG-~~~~VA~~L~e~g~dv~atDI~~----~~a-------~~g~~~v-----------~DDitnP~~~iY~~A~lIY 75 (129)
T COG1255 19 EVGIG-FFLDVAKRLAERGFDVLATDINE----KTA-------PEGLRFV-----------VDDITNPNISIYEGADLIY 75 (129)
T ss_pred EEccc-hHHHHHHHHHHcCCcEEEEeccc----ccC-------cccceEE-----------EccCCCccHHHhhCcccee
Confidence 34544 33567889999999875444433 111 1222211 1334444556778899988
Q ss_pred EeCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 206 LQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 206 ~~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
-- ..|++....+++.+++-|++..+-|=
T Consensus 76 Si-RpppEl~~~ildva~aVga~l~I~pL 103 (129)
T COG1255 76 SI-RPPPELQSAILDVAKAVGAPLYIKPL 103 (129)
T ss_pred ec-CCCHHHHHHHHHHHHhhCCCEEEEec
Confidence 54 56788888999999999999998773
No 164
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=33.35 E-value=98 Score=27.95 Aligned_cols=96 Identities=13% Similarity=0.175 Sum_probs=46.7
Q ss_pred EEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCC-cccCchhHhhhcccc
Q 023130 124 VGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWP-EKFGDEDLEVVKKAG 202 (287)
Q Consensus 124 ig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~-~~l~~~~~~~l~~a~ 202 (287)
|+.+|...+|..+...|.++|=++...-+++ + .-.- +..+ ++..-+.++.. +.+ -....+..+.++.+|
T Consensus 4 I~ViGaGswGTALA~~la~ng~~V~lw~r~~--~--~~~~---i~~~-~~N~~yLp~i~--lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 4 IAVIGAGSWGTALAKVLARNGHEVRLWGRDE--E--IVAE---INET-RENPKYLPGIL--LPPNLKATTDLAEALDGAD 73 (329)
T ss_pred EEEEcCChHHHHHHHHHHhcCCeeEEEecCH--H--HHHH---HHhc-CcCccccCCcc--CCcccccccCHHHHHhcCC
Confidence 5667777777777777777774443333332 1 1100 1111 11111222211 111 112233446677899
Q ss_pred EEEEeCCCCHHHHHHHHHHHH---hCCCcEEE
Q 023130 203 IVLLQREIPDSVNIQVAKAAR---SAGVPVIF 231 (287)
Q Consensus 203 ~v~~~g~~~~~~~~~~~~~a~---~~g~~v~~ 231 (287)
++++. +|...+..+++..+ ..+.+++.
T Consensus 74 ~iv~a--vPs~~~r~v~~~l~~~l~~~~~iv~ 103 (329)
T COG0240 74 IIVIA--VPSQALREVLRQLKPLLLKDAIIVS 103 (329)
T ss_pred EEEEE--CChHHHHHHHHHHhhhccCCCeEEE
Confidence 99884 56556666666654 33444443
No 165
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.34 E-value=1.1e+02 Score=22.45 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCceEEc--cCCCCCCceEEEEEcCCCCeeEEEe
Q 023130 133 GKLITDALSGCGVRLDYMNVV--KDGGVPTGHAVVMLQSDGQNSIIIV 178 (287)
Q Consensus 133 G~~i~~~L~~~gVd~~~v~~~--~~~~~~T~~~~v~i~~~Ger~~~~~ 178 (287)
=+.+.+.|++.|+........ . ....++.+.+.|++|.+..+++
T Consensus 82 ~~~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 82 VDELYARLAKRGAEILYAPREPYA--GGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred HHHHHHHHHHcCCeEecCCccccc--CCCcEEEEEEECCCCcEEEEEe
Confidence 356888999999986543221 1 1234567778899998866654
No 166
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=33.26 E-value=1.3e+02 Score=27.03 Aligned_cols=151 Identities=17% Similarity=0.220 Sum_probs=82.4
Q ss_pred CCEEEECCceeeeEeecC--CCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCC
Q 023130 68 PPLVVVGSANFDIYVEID--RLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd--~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gV 145 (287)
++++++.++++|-+-.=- .+-..+. +.....-. .-+.+|+..|+-|.++.-=+-+=+... ..|++.|.+.|.
T Consensus 113 pdl~vi~DVcLc~YT~hGHcGil~~g~-i~ND~Tl~----~L~~~Als~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~ 186 (322)
T PRK13384 113 PEMMVIPDICFCEYTDHGHCGVLHNDE-VDNDATVE----NLVKQSVTAAKAGADMLAPSAMMDGQV-KAIRQGLDAAGF 186 (322)
T ss_pred CCeEEEeeeecccCCCCCceeeccCCc-CccHHHHH----HHHHHHHHHHHcCCCeEecccccccHH-HHHHHHHHHCCC
Confidence 688999999998873100 0101110 00000000 125688889999998776666656544 479999999998
Q ss_pred CCCceEEccCCCCCCceEEEEEcC---------CCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHH
Q 023130 146 RLDYMNVVKDGGVPTGHAVVMLQS---------DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNI 216 (287)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~v~i~~---------~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~ 216 (287)
.-..+- . +..=++-.++.| .|+|...-.+-+|.. +.+.+...+.-+.||++.+-..++ .+
T Consensus 187 ~~v~Im--S---YsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~---eAlre~~~D~~EGAD~lMVKPal~---YL 255 (322)
T PRK13384 187 EHVAIL--A---HSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGR---QALLEALLDEAEGADILMVKPGTP---YL 255 (322)
T ss_pred CCCcee--e---hhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHH---HHHHHHHhhHhhCCCEEEEcCCch---HH
Confidence 432222 1 123233333322 245543322222211 334333445668899999864444 77
Q ss_pred HHHHHHHhC-CCcEE-EeCCC
Q 023130 217 QVAKAARSA-GVPVI-FDAGG 235 (287)
Q Consensus 217 ~~~~~a~~~-g~~v~-~D~~~ 235 (287)
.+++..|++ +.|+. +..++
T Consensus 256 DIi~~~k~~~~lPvaaYqVSG 276 (322)
T PRK13384 256 DVLSRLRQETHLPLAAYQVGG 276 (322)
T ss_pred HHHHHHHhccCCCEEEEEchH
Confidence 778777764 66654 45553
No 167
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=32.75 E-value=1.3e+02 Score=30.10 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=44.4
Q ss_pred hhccccEEEEeCCCCHHH---HHHHHHHHHhC-CC-cEEEeCCCCCC----CCchhhccCCcEEe----------cCHHH
Q 023130 197 VVKKAGIVLLQREIPDSV---NIQVAKAARSA-GV-PVIFDAGGMDA----PIPQELLNFIDILS----------PNESE 257 (287)
Q Consensus 197 ~l~~a~~v~~~g~~~~~~---~~~~~~~a~~~-g~-~v~~D~~~~~~----~~~~~ll~~~dil~----------~Ne~E 257 (287)
.++++|++++-|.-+.+. ....+..|++. |. .|++||..... +..-.+-+..|+.+ -+-+.
T Consensus 166 Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~ii~ytpe~ 245 (649)
T cd02752 166 DIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYIIRYTPEE 245 (649)
T ss_pred HHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHHHhCCHHH
Confidence 367899988877544321 23334456554 64 57889964321 11111112222222 24567
Q ss_pred HHhhcCCCCCCHHHHHHHHHHHhh
Q 023130 258 LGRLTGMPTDSYEQISEAVVKCHK 281 (287)
Q Consensus 258 ~~~l~g~~~~~~~~~~~~~~~l~~ 281 (287)
++.++|.+ .+++.+.++.+.+
T Consensus 246 v~~itGvp---~e~I~~~A~~~a~ 266 (649)
T cd02752 246 VEDICGVP---KEDFLKVAEMFAA 266 (649)
T ss_pred HHHHHCcC---HHHHHHHHHHHHh
Confidence 88889865 5566666666654
No 168
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=32.68 E-value=1.2e+02 Score=22.06 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=27.0
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEe
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D 232 (287)
.+.+|++....++.....+...|+.+++|++.-
T Consensus 32 kaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 32 KAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 478888888888888888888999999987553
No 169
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.51 E-value=3e+02 Score=23.12 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=30.9
Q ss_pred eeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 100 QTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
-..-.|+|+++|+.+ ++..+|.-+=..+. ..+..++.|+..|++-
T Consensus 77 LEIGtGsGY~aAvla-~l~~~V~siEr~~~--L~~~A~~~L~~lg~~n 121 (209)
T COG2518 77 LEIGTGSGYQAAVLA-RLVGRVVSIERIEE--LAEQARRNLETLGYEN 121 (209)
T ss_pred EEECCCchHHHHHHH-HHhCeEEEEEEcHH--HHHHHHHHHHHcCCCc
Confidence 345678888877755 55556655555444 6778888899999854
No 170
>PTZ00293 thymidine kinase; Provisional
Probab=32.45 E-value=3e+02 Score=23.11 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=34.6
Q ss_pred hhhccccEEEEeC-CCCHHHHHHHHHHHHhCCCcEEE---eCCCCC--CCCchhhccCCcEE
Q 023130 196 EVVKKAGIVLLQR-EIPDSVNIQVAKAARSAGVPVIF---DAGGMD--APIPQELLNFIDIL 251 (287)
Q Consensus 196 ~~l~~a~~v~~~g-~~~~~~~~~~~~~a~~~g~~v~~---D~~~~~--~~~~~~ll~~~dil 251 (287)
+.+...+++.++- .+-.+ +.++++.+...|++|++ |..... .+....|++.+|-+
T Consensus 73 ~~~~~~dvI~IDEaQFf~~-i~~~~~~l~~~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V 133 (211)
T PTZ00293 73 ETAKNYDVIAIDEGQFFPD-LVEFSEAAANLGKIVIVAALDGTFQRKPFGQILNLIPLAERV 133 (211)
T ss_pred HhccCCCEEEEEchHhhHh-HHHHHHHHHHCCCeEEEEecCcccccCcCccHHHHHHhhCEE
Confidence 4456789999874 22233 67778888888999876 443332 23345677766655
No 171
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=32.28 E-value=64 Score=27.87 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=21.9
Q ss_pred ccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 199 KKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 199 ~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
.+.|+++ +..-.-.+=..+++.|++++++++--.+
T Consensus 120 ~~~DyvI-DaiD~v~~Kv~Li~~c~~~ki~vIss~G 154 (263)
T COG1179 120 KGFDYVI-DAIDSVRAKVALIAYCRRNKIPVISSMG 154 (263)
T ss_pred CCCCEEE-EchhhhHHHHHHHHHHHHcCCCEEeecc
Confidence 3467764 3221122345788899999999887443
No 172
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=32.20 E-value=2.9e+02 Score=22.73 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=27.5
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (287)
+.+.++|+++.+ ..+.+....+-+.++++++|++.-.
T Consensus 109 ~~~~~~dvVi~~-~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 109 EYLQKFTLVIAT-EENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHhCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 557788988765 3445667778889999999887643
No 173
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=32.09 E-value=2.8e+02 Score=23.72 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=30.2
Q ss_pred ccccEEEEeCCC--CHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 199 KKAGIVLLQREI--PDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 199 ~~a~~v~~~g~~--~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
...|.+++.|+. ..+.+.++++..|+..+|+++-|+..
T Consensus 31 ~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~ 70 (232)
T PRK04169 31 SGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNI 70 (232)
T ss_pred cCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 457999998865 35667888888888899999988753
No 174
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=31.37 E-value=1.2e+02 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=31.6
Q ss_pred HHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCC
Q 023130 110 QAACGAKLSHPTYFVGQVGEDANGKLITDALSGCG 144 (287)
Q Consensus 110 ~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~g 144 (287)
.+...+++|.+++|-++-.+|-..+.+++.|.+.|
T Consensus 24 ~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 24 KAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred HHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 45567899999999999999999999999999987
No 175
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=31.11 E-value=2.9e+02 Score=23.27 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=30.8
Q ss_pred ecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 102 LAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 102 ~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
.+|- ..+...|.+.|.++.+++.-+. ....+.+.|++.|++.
T Consensus 26 ~pga--~e~L~~L~~~G~~~~ivTN~~~--~~~~~~~~L~~~gl~~ 67 (242)
T TIGR01459 26 YPGA--VQNLNKIIAQGKPVYFVSNSPR--NIFSLHKTLKSLGINA 67 (242)
T ss_pred CccH--HHHHHHHHHCCCEEEEEeCCCC--ChHHHHHHHHHCCCCc
Confidence 5554 5667778888999999998443 3344567899999986
No 176
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.96 E-value=2.1e+02 Score=23.25 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=41.3
Q ss_pred ecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEcc
Q 023130 102 LAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVK 154 (287)
Q Consensus 102 ~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~ 154 (287)
..-.+..-++..+.+||.+ +|..-+. +++..+++.|++.+++...+...+
T Consensus 68 vSNn~e~RV~~~~~~l~v~--fi~~A~K-P~~~~fr~Al~~m~l~~~~vvmVG 117 (175)
T COG2179 68 VSNNKESRVARAAEKLGVP--FIYRAKK-PFGRAFRRALKEMNLPPEEVVMVG 117 (175)
T ss_pred EeCCCHHHHHhhhhhcCCc--eeecccC-ccHHHHHHHHHHcCCChhHEEEEc
Confidence 3347788899999999876 6776666 799999999999999988777765
No 177
>PLN00203 glutamyl-tRNA reductase
Probab=30.91 E-value=1.6e+02 Score=28.55 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=64.8
Q ss_pred HHHHHHHH--cC---CCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCc-eEEEEEcCCCCeeEEEeCCCC
Q 023130 109 NQAACGAK--LS---HPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTG-HAVVMLQSDGQNSIIIVGGTN 182 (287)
Q Consensus 109 N~A~~la~--LG---~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~-~~~v~i~~~Ger~~~~~~ga~ 182 (287)
.+|+-+++ +| ..-.=++.+|....|..+.+.|...|+.. +.+.. .+. ..-.+...- .+..
T Consensus 249 s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~--V~V~n----Rs~era~~La~~~--------~g~~ 314 (519)
T PLN00203 249 SAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTK--MVVVN----RSEERVAALREEF--------PDVE 314 (519)
T ss_pred HHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCe--EEEEe----CCHHHHHHHHHHh--------CCCc
Confidence 45555444 44 22334555666779999999999888632 22221 111 000000000 0000
Q ss_pred CCCCCcccCchhHhhhccccEEEEeCCCCH-HHHHHHHHHHH---h--CCCcEEEeCCCCCCCCchhhccCCcEEecCHH
Q 023130 183 MSCWPEKFGDEDLEVVKKAGIVLLQREIPD-SVNIQVAKAAR---S--AGVPVIFDAGGMDAPIPQELLNFIDILSPNES 256 (287)
Q Consensus 183 ~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~-~~~~~~~~~a~---~--~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~ 256 (287)
.. ...+ .+..+.+..+|+|+.+...+. -...+.++.+. + ..-.+++|.+-+ ++.-..+-....+...|-+
T Consensus 315 i~--~~~~-~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP-RdIdp~v~~l~~v~lydiD 390 (519)
T PLN00203 315 II--YKPL-DEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVP-RNVGACVSELESARVYNVD 390 (519)
T ss_pred eE--eecH-hhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCC-CCCccccccCCCCeEEEec
Confidence 00 0011 122356788999887643221 11222333321 1 234689999754 3333333333445566666
Q ss_pred HHHhhcCC
Q 023130 257 ELGRLTGM 264 (287)
Q Consensus 257 E~~~l~g~ 264 (287)
++..+...
T Consensus 391 dL~~i~~~ 398 (519)
T PLN00203 391 DLKEVVAA 398 (519)
T ss_pred cHHHHHHH
Confidence 66666553
No 178
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=30.58 E-value=3.5e+02 Score=23.31 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=25.3
Q ss_pred eecCchHHHHHHHHHHcCCCcEEEEeecCC-chHHHHHHHHHhCC
Q 023130 101 TLAGGKGANQAACGAKLSHPTYFVGQVGED-ANGKLITDALSGCG 144 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG~~~~lig~vG~D-~~G~~i~~~L~~~g 144 (287)
.-.||.|.-++.+++..|.++.++.+ + .-.+.+.+.+.+.|
T Consensus 123 iGaGg~g~aia~~L~~~g~~v~v~~R---~~~~~~~la~~~~~~~ 164 (270)
T TIGR00507 123 IGAGGAARAVALPLLKADCNVIIANR---TVSKAEELAERFQRYG 164 (270)
T ss_pred EcCcHHHHHHHHHHHHCCCEEEEEeC---CHHHHHHHHHHHhhcC
Confidence 34688888888888888876665543 2 22344555554433
No 179
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=30.49 E-value=67 Score=27.74 Aligned_cols=88 Identities=18% Similarity=0.108 Sum_probs=53.1
Q ss_pred hccccEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecCHHHHHhh---------------
Q 023130 198 VKKAGIVLLQR-EIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPNESELGRL--------------- 261 (287)
Q Consensus 198 l~~a~~v~~~g-~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~Ne~E~~~l--------------- 261 (287)
..+||.+++-. -+.++.+..+++.|++.|..+.+..... .+....+-..++++-.|...+..+
T Consensus 122 ~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~-~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip 200 (247)
T PRK13957 122 AFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTE-DEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLP 200 (247)
T ss_pred HcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCH-HHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC
Confidence 45678876644 4556678999999999999999988643 222222333555555555432221
Q ss_pred ------cCCCCCCHHHHHHHHHHHhhhcccCC
Q 023130 262 ------TGMPTDSYEQISEAVVKCHKMVSVGT 287 (287)
Q Consensus 262 ------~g~~~~~~~~~~~~~~~l~~~v~v~t 287 (287)
...-..+++++....+. .+-+.|||
T Consensus 201 ~~~~~IsESGI~t~~d~~~l~~~-~davLvG~ 231 (247)
T PRK13957 201 PNIVKVGESGIESRSDLDKFRKL-VDAALIGT 231 (247)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHh-CCEEEECH
Confidence 11113567777765554 67777765
No 180
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=30.18 E-value=1e+02 Score=28.48 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=55.5
Q ss_pred ceeecCchHHHHHHHHHHcCCCcEEEEeecCCchH---HHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeE
Q 023130 99 SQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANG---KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSI 175 (287)
Q Consensus 99 ~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G---~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~ 175 (287)
...++.|.++-.+..++-+...-.++. .++.|| +.+.+.+.+.||.+.++ |.. +
T Consensus 73 a~~~~SGmaAi~~~l~~ll~~Gd~iv~--~~~~Y~~t~~~~~~~l~~~gv~v~~~-----------------d~~-d--- 129 (386)
T PF01053_consen 73 ALLFSSGMAAISAALLALLKPGDHIVA--SDDLYGGTYRLLEELLPRFGVEVTFV-----------------DPT-D--- 129 (386)
T ss_dssp EEEESSHHHHHHHHHHHHS-TTBEEEE--ESSSSHHHHHHHHHCHHHTTSEEEEE-----------------STT-S---
T ss_pred eeeccchHHHHHHHHHhhcccCCceEe--cCCccCcchhhhhhhhcccCcEEEEe-----------------Cch-h---
Confidence 345788888887776666643222222 223344 34555677777776432 110 0
Q ss_pred EEeCCCCCCCCCcccCchhHhhhc-cccEEEEeCCCC----HHHHHHHHHHHHhCC-CcEEEeCCCC
Q 023130 176 IIVGGTNMSCWPEKFGDEDLEVVK-KAGIVLLQREIP----DSVNIQVAKAARSAG-VPVIFDAGGM 236 (287)
Q Consensus 176 ~~~~ga~~~~~~~~l~~~~~~~l~-~a~~v~~~g~~~----~~~~~~~~~~a~~~g-~~v~~D~~~~ 236 (287)
.+.+ .+.++ +.++|+++.... -.-+.++.+.|+++| +++++|-...
T Consensus 130 -----------~~~l----~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a 181 (386)
T PF01053_consen 130 -----------LEAL----EAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA 181 (386)
T ss_dssp -----------HHHH----HHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred -----------HHHH----HhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence 0112 12222 577888865221 123788999999999 9999999754
No 181
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=30.18 E-value=3.9e+02 Score=23.64 Aligned_cols=123 Identities=11% Similarity=-0.116 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHcCCCcEEEEeecCCchH---HHHHHHHHhCCCCCCceEEccCCCCCCceEEEE---EcCCCCeeEEEe
Q 023130 105 GKGANQAACGAKLSHPTYFVGQVGEDANG---KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVM---LQSDGQNSIIIV 178 (287)
Q Consensus 105 G~a~N~A~~la~LG~~~~lig~vG~D~~G---~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~---i~~~Ger~~~~~ 178 (287)
|.+.-+|.+++.-.-+-..|..+||..+- -.-+....+++++...+.... + ..|..--. ..+.|.++....
T Consensus 56 G~alPaAiGaklA~Pd~~VVai~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN--~-~yGmt~gQ~sp~t~~G~~~~~~~ 132 (287)
T TIGR02177 56 GRALPVATGIKLANPHLKVIVVGGDGDLYGIGGNHFVAAGRRNVDITVIVHDN--Q-VYGLTKGQASPTLLKGVKTKSLP 132 (287)
T ss_pred ccHHHHHHHHHHHCCCCcEEEEeCchHHHhccHHHHHHHHHhCcCeEEEEEEC--H-HHHhhhcccccCccCCcceeecc
Confidence 77888888887655456778888886421 112334456789988777664 2 22221111 111222221111
Q ss_pred CCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 179 GGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 179 ~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
.+ +. ...++.........+.++........+.+.++++.|-+++-+.++|.-
T Consensus 133 ~g-~~---~~~~np~~~a~A~g~g~va~~~~~~~~eL~~ai~~Al~~~GpslIeV~ 184 (287)
T TIGR02177 133 YP-NI---QDPVNPLLLAIALGYTFVARGFSGDVAHLKEIIKEAINHKGYALVDIL 184 (287)
T ss_pred cC-cc---CCCCCHHHHHHhCCCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 11 10 011222333444555555443123445578888888888888888874
No 182
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=30.10 E-value=3.3e+02 Score=22.82 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=24.8
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEE
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~ 231 (287)
+.+.++|+++.+... .+.-..+-+.++++++|++.
T Consensus 107 ~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 107 ELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEE
Confidence 456789998876543 34456677788889988765
No 183
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=29.25 E-value=4e+02 Score=23.46 Aligned_cols=123 Identities=15% Similarity=0.008 Sum_probs=65.3
Q ss_pred chHHHHHHHHHHcCCCcEEEEeecCCc---hHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEc---CCCCeeEEEe
Q 023130 105 GKGANQAACGAKLSHPTYFVGQVGEDA---NGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQ---SDGQNSIIIV 178 (287)
Q Consensus 105 G~a~N~A~~la~LG~~~~lig~vG~D~---~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~---~~Ger~~~~~ 178 (287)
|.+.-+|.+++...-+...+...||.. .|-.=+....++|++..++..+. + ..+..-.... +-|.++....
T Consensus 62 G~alp~A~GaklA~Pd~~VV~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN--~-~ygmtggQ~s~~t~~g~~t~~t~ 138 (279)
T PRK11866 62 GRVLPIATGVKWANPKLTVIGYGGDGDGYGIGLGHLPHAARRNVDITYIVSNN--Q-VYGLTTGQASPTTPRGVKTKTTP 138 (279)
T ss_pred ccHHHHHHHHHHHCCCCcEEEEECChHHHHccHHHHHHHHHHCcCcEEEEEEC--h-hhhhhcccccCCCCCCceeeccC
Confidence 778999999876654567788888862 23333344577889988877765 2 3332211111 1223332221
Q ss_pred CCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 179 GGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 179 ~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
.|. . ...++...+..-..+.++........+.+.++++.|.++.-+.++|.-
T Consensus 139 ~g~--~--~~~~d~~~iA~a~G~~~Va~~~~~~~~~l~~~l~~Al~~~Gps~I~v~ 190 (279)
T PRK11866 139 DGN--I--EEPFNPIALALAAGATFVARGFSGDVKHLKEIIKEAIKHKGFSFIDVL 190 (279)
T ss_pred CCC--C--CCCCCHHHHHHHCCCCEEEEEcCCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 111 0 011111111222234444332223345578888888888878888774
No 184
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=29.24 E-value=2.2e+02 Score=25.95 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=28.1
Q ss_pred hccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 198 l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
...+|+++++ +|.++..+++...-+.|++ ++|.+..
T Consensus 68 ~~~~DvvFla--lPhg~s~~~v~~l~~~g~~-VIDLSad 103 (349)
T COG0002 68 LDECDVVFLA--LPHGVSAELVPELLEAGCK-VIDLSAD 103 (349)
T ss_pred cccCCEEEEe--cCchhHHHHHHHHHhCCCe-EEECCcc
Confidence 4568999985 5677788888888877876 8999854
No 185
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=29.15 E-value=1.2e+02 Score=28.55 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=9.4
Q ss_pred CCCCCCCCEEEECC
Q 023130 62 NPINTPPPLVVVGS 75 (287)
Q Consensus 62 ~~~~~~~~IlviG~ 75 (287)
+...++++|+|+|.
T Consensus 34 ~~~~~~~DViIVGa 47 (450)
T PLN00093 34 KLSGRKLRVAVIGG 47 (450)
T ss_pred CcCCCCCeEEEECC
Confidence 44455678999874
No 186
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=29.09 E-value=3.6e+02 Score=24.19 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=28.1
Q ss_pred hhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 197 VVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 197 ~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
.+.++|+++++ +|.+...+++..+.+.|+ .++|.+..
T Consensus 47 ~~~~~DvvFla--lp~~~s~~~~~~~~~~g~-~VIDlSad 83 (313)
T PRK11863 47 LLNAADVAILC--LPDDAAREAVALIDNPAT-RVIDASTA 83 (313)
T ss_pred hhcCCCEEEEC--CCHHHHHHHHHHHHhCCC-EEEECChh
Confidence 34578999885 477778888888877777 68899864
No 187
>smart00642 Aamy Alpha-amylase domain.
Probab=28.71 E-value=62 Score=25.95 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 213 SVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+.+.++++.|+++|+.|++|....
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 70 EDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
Confidence 558999999999999999999644
No 188
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=28.55 E-value=1.5e+02 Score=25.19 Aligned_cols=51 Identities=16% Similarity=0.104 Sum_probs=33.8
Q ss_pred ccEEEEeCCCC--HHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecC
Q 023130 201 AGIVLLQREIP--DSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPN 254 (287)
Q Consensus 201 a~~v~~~g~~~--~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~N 254 (287)
...|.++|.-| ...+.++++.+++.|..+.+..|+.. ..+.+..+|++.++
T Consensus 73 ~~~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl---~~~~l~~~d~v~vs 125 (238)
T TIGR03365 73 PLHVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSV---WQDWFRDLDDLTLS 125 (238)
T ss_pred CCeEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCC---cHHHHhhCCEEEEe
Confidence 34566766544 23478899999999999999999752 22344555655444
No 189
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=28.54 E-value=1.5e+02 Score=21.45 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEe
Q 023130 133 GKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIV 178 (287)
Q Consensus 133 G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~ 178 (287)
=+.+.+.|++.|++.......+ .-+..+.+.|++|.+-.+.+
T Consensus 76 v~~~~~~l~~~G~~~~~~~~~~----~~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 76 LERRVAALEASGLGIGWIEGDP----GHGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred HHHHHHHHHHcCCccccccCCC----CCcceEEEECCCCCEEEEEE
Confidence 3566789999999864322222 33556788999998766554
No 190
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=28.28 E-value=5.1e+02 Score=24.37 Aligned_cols=35 Identities=20% Similarity=0.492 Sum_probs=25.9
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEE
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~ 231 (287)
+.+.+.++|+.+ ..+......+.+.++++++|++.
T Consensus 108 ~f~~~fdiVI~t-~~~~~~~~~L~~~c~~~~iPlI~ 142 (425)
T cd01493 108 SFFSQFTVVIAT-NLPESTLLRLADVLWSANIPLLY 142 (425)
T ss_pred HHhcCCCEEEEC-CCCHHHHHHHHHHHHHcCCCEEE
Confidence 557778888664 45566677788889999998764
No 191
>COG1159 Era GTPase [General function prediction only]
Probab=28.27 E-value=4.3e+02 Score=23.54 Aligned_cols=112 Identities=14% Similarity=0.198 Sum_probs=62.1
Q ss_pred CCCcEEEEeecCCchH-HHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCccc----Cc
Q 023130 118 SHPTYFVGQVGEDANG-KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKF----GD 192 (287)
Q Consensus 118 G~~~~lig~vG~D~~G-~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l----~~ 192 (287)
+.++.|++.+|.-..| .-+++.|-...|.. +...+ ..|+..+.=+-.+++..+++...+........+ ..
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisI--vS~k~---QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~ 77 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISI--VSPKP---QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNK 77 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEe--ecCCc---chhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHH
Confidence 4678999999987677 56788887666653 22222 245554443333446666655554444322223 23
Q ss_pred hhHhhhccccEEEEe--CCC-CHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 193 EDLEVVKKAGIVLLQ--REI-PDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 193 ~~~~~l~~a~~v~~~--g~~-~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
.....+..+|++++- +.- ....-..+++..++...|+++=.+
T Consensus 78 ~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iN 122 (298)
T COG1159 78 AARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVN 122 (298)
T ss_pred HHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEE
Confidence 345668889998763 221 111133445555555567766443
No 192
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=27.58 E-value=86 Score=26.73 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=34.7
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEE--EeCCCCCCCCchhhccCCcEEe
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVI--FDAGGMDAPIPQELLNFIDILS 252 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~--~D~~~~~~~~~~~ll~~~dil~ 252 (287)
+++++.+..+.......++++..|+.|++.- ++|... .+.+.++++.+|++.
T Consensus 82 Gad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~-~~~l~~~l~~vD~VL 135 (229)
T PRK09722 82 GADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP-VESIKYYIHLLDKIT 135 (229)
T ss_pred CCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHhcCEEE
Confidence 5788877655322236778899999998854 455432 345677888888664
No 193
>PTZ00058 glutathione reductase; Provisional
Probab=27.50 E-value=98 Score=30.21 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCcccceecchHHhhccCC-CCeeeeeeeccCCCccchhhhhhhhcccCCCCCCCCCCCCCCEEEECCceeeeEeecCC
Q 023130 8 PSNHCQLKFQNILAKQLNKP-INTIPFHFTITNRQFPAHVIKCQCQRRDQNPVPKNPINTPPPLVVVGSANFDIYVEIDR 86 (287)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IlviG~~~iD~~~~vd~ 86 (287)
|.-.|.++..|-..-...++ +..+| ...+.+......--.......++|+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~yDvvVIG------------ 55 (561)
T PTZ00058 2 RQLSYFHFLLFFALLNPSIKLIRSFS--------------FYHNLEASSAPTHLKKKPRMVYDLIVIG------------ 55 (561)
T ss_pred CccchhhhhhhhhhhhhhHhhhhhhc--------------hhhhhcccCcccccccCCCccccEEEEC------------
Q ss_pred CCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEE
Q 023130 87 LPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFV 124 (287)
Q Consensus 87 ~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~li 124 (287)
.|-.|.++|..++++|.+|.+|
T Consensus 56 ----------------~G~aG~~aA~~aa~~G~~ValI 77 (561)
T PTZ00058 56 ----------------GGSGGMAAARRAARNKAKVALV 77 (561)
T ss_pred ----------------cCHHHHHHHHHHHHcCCeEEEE
No 194
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=27.48 E-value=1.5e+02 Score=26.51 Aligned_cols=151 Identities=15% Similarity=0.210 Sum_probs=82.6
Q ss_pred CCEEEECCceeeeEeecCC--CCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCC
Q 023130 68 PPLVVVGSANFDIYVEIDR--LPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd~--~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gV 145 (287)
++++++.++++|-+-.=-+ +-..+..+.....-. .-+.+|+..|+-|.++..=+-+=+... ..|++.|.+.|.
T Consensus 106 pdl~vi~Dvclc~YT~hGHcGil~~~g~vdND~Tl~----~L~k~Avs~A~AGADiVAPSdMMDGrV-~aIR~aLD~~G~ 180 (320)
T cd04824 106 PELLIACDVCLCEYTSHGHCGILYEDGTINNEASVK----RLAEVALAYAKAGAHIVAPSDMMDGRV-RAIKQALIQAGL 180 (320)
T ss_pred CCcEEEEeeeccCCCCCCcceeECCCCcCcCHHHHH----HHHHHHHHHHHhCCCEEecccccccHH-HHHHHHHHHCCC
Confidence 6789999999988731100 100001010000001 125688889999998777766666544 469999999999
Q ss_pred --CCCceEEccCCCCCCceEEEEEcC----------CCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHH
Q 023130 146 --RLDYMNVVKDGGVPTGHAVVMLQS----------DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDS 213 (287)
Q Consensus 146 --d~~~v~~~~~~~~~T~~~~v~i~~----------~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~ 213 (287)
++.-+.. .+=++-.++.| -|+|...-.+-+|. .+.+.+...+.-+.||++.+-..++
T Consensus 181 ~~~v~ImSY------saKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~---~eAlre~~~D~~EGAD~lMVKPal~-- 249 (320)
T cd04824 181 GNKVSVMSY------SAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGAR---GLALRAVERDVSEGADMIMVKPGTP-- 249 (320)
T ss_pred ccCCeeeeh------HHHhhhhccchHHHHhcCCCCCCCccccCCCCcCH---HHHHHHHHhhHHhCCCEEEEcCCch--
Confidence 4433322 23333333322 14443221111111 1233333445667899999864443
Q ss_pred HHHHHHHHHHhC--CCcEE-EeCCC
Q 023130 214 VNIQVAKAARSA--GVPVI-FDAGG 235 (287)
Q Consensus 214 ~~~~~~~~a~~~--g~~v~-~D~~~ 235 (287)
++.+++.+|++ +.|+. +..++
T Consensus 250 -YLDIi~~~k~~~~~~PvaaYqVSG 273 (320)
T cd04824 250 -YLDIVREAKDKHPDLPLAVYHVSG 273 (320)
T ss_pred -HHHHHHHHHHhccCCCEEEEEccH
Confidence 78888888764 56654 46654
No 195
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.41 E-value=2.4e+02 Score=23.14 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCCCchhhcc-CCcEEecCHHHHHhhcC
Q 023130 214 VNIQVAKAARSAGVPVIFDAGGMDAPIPQELLN-FIDILSPNESELGRLTG 263 (287)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~-~~dil~~Ne~E~~~l~g 263 (287)
.+...++..++.|+.+++|--+......+.+.. .+|+++.+......+..
T Consensus 133 ~~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~iKld~~~~~~~~~ 183 (240)
T cd01948 133 EALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIET 183 (240)
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCEEEECHHHHHhHhc
Confidence 367889999999999999864433333334443 48999999988877765
No 196
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.38 E-value=2e+02 Score=23.84 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=35.8
Q ss_pred hhhccccEEEE-eCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhcc--CCcEEecC
Q 023130 196 EVVKKAGIVLL-QREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLN--FIDILSPN 254 (287)
Q Consensus 196 ~~l~~a~~v~~-~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~--~~dil~~N 254 (287)
.....-|++++ +.+-....+.++++.||++|++++.=.+... ..+..++. ..-+..|+
T Consensus 105 ~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~-s~l~~l~~~~D~~i~ip~ 165 (196)
T PRK10886 105 ALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDG-GELAGLLGPQDVEIRIPS 165 (196)
T ss_pred HcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC-ChhhhccccCCEEEEcCC
Confidence 34566677654 4333344589999999999999888666542 33445543 33344454
No 197
>PRK07324 transaminase; Validated
Probab=27.36 E-value=4.6e+02 Score=23.68 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=25.5
Q ss_pred cccEEEEeC-------CCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 200 KAGIVLLQR-------EIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 200 ~a~~v~~~g-------~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
+.+++++.. ..+.+.+.++++.|+++++.++.|-.
T Consensus 153 ~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~ 194 (373)
T PRK07324 153 NTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEV 194 (373)
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcc
Confidence 456777643 13456678888999999999999864
No 198
>COG2893 ManX Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]
Probab=27.06 E-value=70 Score=25.10 Aligned_cols=28 Identities=25% Similarity=0.125 Sum_probs=23.7
Q ss_pred eeecCchHHHHHHHHHHcCCCcEEEEee
Q 023130 100 QTLAGGKGANQAACGAKLSHPTYFVGQV 127 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~LG~~~~lig~v 127 (287)
.-..||+..|+|..+...+-.+.+|+-+
T Consensus 66 tDl~GGSP~N~A~~l~~~~~~~~viaGv 93 (143)
T COG2893 66 TDLFGGSPFNVASRLAMEGPRVEVIAGV 93 (143)
T ss_pred EecCCCCHhHHHHHHHhhCCCceEEecC
Confidence 3468999999999999999887777755
No 199
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.02 E-value=1.9e+02 Score=21.37 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEec
Q 023130 214 VNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSP 253 (287)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~ 253 (287)
.+.++++.|+++|++++.=.+... .++.+.+|+.+.
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~~~~----s~la~~ad~~l~ 97 (128)
T cd05014 62 ELLNLLPHLKRRGAPIIAITGNPN----STLAKLSDVVLD 97 (128)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCC----CchhhhCCEEEE
Confidence 378999999999999887554332 235556776553
No 200
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.99 E-value=2.2e+02 Score=25.56 Aligned_cols=151 Identities=16% Similarity=0.255 Sum_probs=81.2
Q ss_pred CCEEEECCceeeeEeecC--CCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCC
Q 023130 68 PPLVVVGSANFDIYVEID--RLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd--~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gV 145 (287)
++++++.++++|-+-.=- .+...+. +.....-. .-+.+|+..|+-|.++..=+-+=+... ..|++.|.+.|.
T Consensus 108 p~l~vi~DVclc~YT~hGHcGil~~~~-idND~Tl~----~L~~~Avs~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~ 181 (320)
T cd04823 108 PELGIITDVALDPYTSHGHDGIVRDGG-ILNDETVE----VLCKQALVQAEAGADIVAPSDMMDGRI-GAIREALDAEGF 181 (320)
T ss_pred CCcEEEEeeeccCCCCCCcceeccCCc-CcCHHHHH----HHHHHHHHHHHhCCCEEEcccchhhHH-HHHHHHHHHCCC
Confidence 678999999998873110 0111111 00000001 125688899999998766665545433 579999999998
Q ss_pred CCCceEEccCCCCCCceEEEEEcC----------CCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHH
Q 023130 146 RLDYMNVVKDGGVPTGHAVVMLQS----------DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVN 215 (287)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~v~i~~----------~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~ 215 (287)
.-..+- .+.+=++-.++.| .|+|...-.+-+|.. +.+.+...+.-+.||++.+-..++ +
T Consensus 182 ~~v~Im-----SYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~---eAlre~~~Di~EGAD~lMVKPal~---Y 250 (320)
T cd04823 182 TNVSIL-----SYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSR---EALREVALDIAEGADMVMVKPGMP---Y 250 (320)
T ss_pred CCCcee-----echHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHH---HHHHHHHhhHHhCCCEEEEcCCch---H
Confidence 432222 1233333333332 134433222111211 233333446668899999864444 6
Q ss_pred HHHHHHHHh-CCCcEE-EeCCC
Q 023130 216 IQVAKAARS-AGVPVI-FDAGG 235 (287)
Q Consensus 216 ~~~~~~a~~-~g~~v~-~D~~~ 235 (287)
+.+++.+|+ .+.|+. +..++
T Consensus 251 LDIi~~~k~~~~lPvaaYqVSG 272 (320)
T cd04823 251 LDIIRRVKDEFGVPTFAYQVSG 272 (320)
T ss_pred HHHHHHHHHhcCCCEEEEEccH
Confidence 777777765 466664 45553
No 201
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=26.84 E-value=2.4e+02 Score=23.62 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=28.0
Q ss_pred ccEEEEeCCC--CHHHHHHHHHHHHh-CCCcEEEeCCC
Q 023130 201 AGIVLLQREI--PDSVNIQVAKAARS-AGVPVIFDAGG 235 (287)
Q Consensus 201 a~~v~~~g~~--~~~~~~~~~~~a~~-~g~~v~~D~~~ 235 (287)
+|.+.+.|+. ..+.+.++++..|+ ..+|+++-|+.
T Consensus 25 tDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~ 62 (205)
T TIGR01769 25 TDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGN 62 (205)
T ss_pred CCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 6999998764 55668888888888 57999998874
No 202
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.72 E-value=1.4e+02 Score=28.09 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=32.6
Q ss_pred cccEEEEeCCCCH----HHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecC
Q 023130 200 KAGIVLLQREIPD----SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPN 254 (287)
Q Consensus 200 ~a~~v~~~g~~~~----~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~N 254 (287)
+.++|++.....+ .-+.++.+.|+++|+++++|...........+--.+|++..+
T Consensus 149 ~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl~~GaD~vv~S 207 (433)
T PRK08134 149 NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPFEHGADLVYHS 207 (433)
T ss_pred CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCEEEec
Confidence 4566666532111 127788999999999999998754222222232346665544
No 203
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=26.48 E-value=4.5e+02 Score=23.15 Aligned_cols=123 Identities=11% Similarity=-0.099 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHcCCCcEEEEeecCCchHH---HHHHHHHhCCCCCCceEEccCCCCCCceEEEEEc---CCCCeeEEEe
Q 023130 105 GKGANQAACGAKLSHPTYFVGQVGEDANGK---LITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQ---SDGQNSIIIV 178 (287)
Q Consensus 105 G~a~N~A~~la~LG~~~~lig~vG~D~~G~---~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~---~~Ger~~~~~ 178 (287)
|.+.-+|.+++...-+-..|+..||..+.. .=+....+++++..++..+. + ..+..-.... +.|..+....
T Consensus 63 G~alp~AiGaklA~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN--~-~Yg~t~~Q~s~~t~~g~~~~~~p 139 (280)
T PRK11869 63 GRAIPAATAVKATNPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNN--Q-VYGLTKGQASPTTLKGFKTPTQP 139 (280)
T ss_pred ccHHHHHHHHHHHCCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEEC--H-HHhhhcceecCCCCCCcccccCC
Confidence 667888888876665667788888864322 22334477889998887765 2 2222111111 1111111100
Q ss_pred CCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 179 GGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 179 ~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
.+ . ...+.++ ..+..-..+.++........+.+.+++++|.++.-+.++|.-
T Consensus 140 ~g-~-~~~~~D~--~~lA~a~G~~~va~~~~~~~~~l~~~i~~Al~~~Gp~lIeV~ 191 (280)
T PRK11869 140 WG-V-FEEPFNP--IALAIALDASFVARTFSGDIEETKEILKEAIKHKGLAIVDIF 191 (280)
T ss_pred CC-c-cCCCCCH--HHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11 1 1111111 111222344444432222344578888888888888888874
No 204
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=26.11 E-value=2.8e+02 Score=25.23 Aligned_cols=108 Identities=21% Similarity=0.195 Sum_probs=54.6
Q ss_pred eecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCC
Q 023130 101 TLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGG 180 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~g 180 (287)
.-.||+|.|++-.+.+.|.+-.-+-.+-.|. +.|.....+.. +...+ . .|+ . ....++... |
T Consensus 23 iGvGg~G~n~v~~l~~~~~~~~~~iainTD~------~~L~~~~a~~k-i~iG~--~-~t~-G---~GaG~~~~~----G 84 (349)
T TIGR00065 23 IGVGGGGNNTVNRMLEEGVEGVEFIAINTDA------QHLKTTKADKK-ILIGK--K-LTR-G---LGAGGNPEI----G 84 (349)
T ss_pred EEeCCcHHHHHHHHHHcCCCceEEEEEECCH------HHHhcCCCCeE-EEcCC--C-CCC-C---CCCCCCHHH----H
Confidence 4579999999999999986433333355552 45655554432 22221 1 111 0 001111110 1
Q ss_pred CCCCCCCcccCchhHhhhccccEEEEeCCCC----HHHHHHHHHHHHhCCCcE
Q 023130 181 TNMSCWPEKFGDEDLEVVKKAGIVLLQREIP----DSVNIQVAKAARSAGVPV 229 (287)
Q Consensus 181 a~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~----~~~~~~~~~~a~~~g~~v 229 (287)
... .++..+...+.++.+|.+++...+- .....-+++.+++.++.+
T Consensus 85 ~~~---aee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~ 134 (349)
T TIGR00065 85 RKA---AEESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALT 134 (349)
T ss_pred HHH---HHHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCE
Confidence 000 0111123345678899988754322 234556667788887654
No 205
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=25.98 E-value=3.2e+02 Score=24.49 Aligned_cols=151 Identities=17% Similarity=0.224 Sum_probs=82.9
Q ss_pred CCEEEECCceeeeEeecC--CCCCCCcEEEecCceeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCC
Q 023130 68 PPLVVVGSANFDIYVEID--RLPKVGETVAAKTSQTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGV 145 (287)
Q Consensus 68 ~~IlviG~~~iD~~~~vd--~~P~~~~~~~~~~~~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gV 145 (287)
++++++.++++|-+-.=- .+-..+ .+.....-.. =+.+|+..|+-|.++.-=+-+=+... ..|++.|.+.|.
T Consensus 103 p~l~vi~DvcLc~YT~hGHcGil~~~-~idND~Tl~~----L~k~Als~A~AGADiVAPSdMMDGrV-~aIR~aLd~~g~ 176 (314)
T cd00384 103 PELVVITDVCLCEYTDHGHCGILKDD-YVDNDATLEL----LAKIAVSHAEAGADIVAPSDMMDGRV-AAIREALDEAGF 176 (314)
T ss_pred CCcEEEEeeeccCCCCCCcceeccCC-cCccHHHHHH----HHHHHHHHHHcCCCeeecccccccHH-HHHHHHHHHCCC
Confidence 678999999998873210 111111 1111111111 25678888999998776666656544 479999999997
Q ss_pred CCCceEEccCCCCCCceEEEEEcC----------CCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHHHH
Q 023130 146 RLDYMNVVKDGGVPTGHAVVMLQS----------DGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDSVN 215 (287)
Q Consensus 146 d~~~v~~~~~~~~~T~~~~v~i~~----------~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~~~ 215 (287)
.-..+- . +..=++-.++.| -|+|...-.+-+|.. +.+.+...+.-+.||++.+-..++ +
T Consensus 177 ~~v~Im--s---YsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~---eAlre~~~D~~EGAD~lMVKPal~---Y 245 (314)
T cd00384 177 SDVPIM--S---YSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRR---EALREVELDIEEGADILMVKPALA---Y 245 (314)
T ss_pred CCCcee--e---cHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHH---HHHHHHHhhHHhCCCEEEEcCCch---H
Confidence 432221 1 123333333322 244433222222211 334333446678899999864444 7
Q ss_pred HHHHHHHHh-CCCcEE-EeCCC
Q 023130 216 IQVAKAARS-AGVPVI-FDAGG 235 (287)
Q Consensus 216 ~~~~~~a~~-~g~~v~-~D~~~ 235 (287)
+.+++.+|+ .+.|+. +..++
T Consensus 246 LDIi~~~k~~~~~PvaaYqVSG 267 (314)
T cd00384 246 LDIIRDVRERFDLPVAAYNVSG 267 (314)
T ss_pred HHHHHHHHHhcCCCEEEEEccH
Confidence 778888876 477764 45553
No 206
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=25.84 E-value=1.2e+02 Score=25.59 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=32.9
Q ss_pred HhhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 023130 195 LEVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMDA 238 (287)
Q Consensus 195 ~~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~ 238 (287)
++.+..+|+++.- .+.++....+.+.|++.|++.++=+++...
T Consensus 46 Lp~i~~~Dl~I~y-~lHPDl~~~l~~~~~e~g~kavIvp~~~~~ 88 (217)
T PF02593_consen 46 LPKIPEADLLIAY-GLHPDLTYELPEIAKEAGVKAVIVPSESPK 88 (217)
T ss_pred ccCCCCCCEEEEe-ccCchhHHHHHHHHHHcCCCEEEEecCCCc
Confidence 3347889998764 355677889999999999998888876544
No 207
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=25.45 E-value=1.4e+02 Score=27.87 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=29.6
Q ss_pred hccccEEEEeCC-------CCHHHHHHHHHHHHhCCCcEEEeCC
Q 023130 198 VKKAGIVLLQRE-------IPDSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 198 l~~a~~v~~~g~-------~~~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
-.+.++++++.. .+++.+.++++.|+++|..|+.|-.
T Consensus 170 t~kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDev 213 (420)
T KOG0257|consen 170 TEKTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEV 213 (420)
T ss_pred cCCccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhH
Confidence 456889888752 3567799999999999998888764
No 208
>PLN02409 serine--glyoxylate aminotransaminase
Probab=25.33 E-value=5.3e+02 Score=23.61 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=25.7
Q ss_pred cCchHHHHHHHHHHcCC-CcEEEEeecCCchHHHHHHHHHhCCCCCCce
Q 023130 103 AGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSGCGVRLDYM 150 (287)
Q Consensus 103 ~GG~a~N~A~~la~LG~-~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v 150 (287)
.+|.+++.+.....+.- +-.++... +.++....+.++..|+++..+
T Consensus 67 ~~gt~a~~~a~~~~~~~Gd~Vlv~~~--~~~~~~~~~~~~~~g~~v~~v 113 (401)
T PLN02409 67 TTGTGAWESALTNTLSPGDKVVSFRI--GQFSLLWIDQMQRLNFDVDVV 113 (401)
T ss_pred CCcHHHHHHHHHhcCCCCCEEEEeCC--CchhHHHHHHHHHcCCceEEE
Confidence 46666665555444432 33444443 346666667777788776544
No 209
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=25.27 E-value=3.4e+02 Score=22.70 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=37.2
Q ss_pred hhccccEEEE-eCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEE--ecCHHHHHh
Q 023130 197 VVKKAGIVLL-QREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDIL--SPNESELGR 260 (287)
Q Consensus 197 ~l~~a~~v~~-~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil--~~Ne~E~~~ 260 (287)
.+..-|++++ +++-....+..++..+|+.|++++.=.+... ..+.+.+|++ .|.+.|+..
T Consensus 83 ~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~----SsLak~aDvvl~ip~~~e~~p 145 (202)
T COG0794 83 MITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPD----SSLAKAADVVLVIPVKTEACP 145 (202)
T ss_pred CCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCC----ChHHHhcCeEEEccCccccCc
Confidence 3556677655 4444445588999999999998877555431 2355555554 455555433
No 210
>PRK03673 hypothetical protein; Provisional
Probab=25.06 E-value=93 Score=28.94 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCC
Q 023130 130 DANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQRE 209 (287)
Q Consensus 130 D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~ 209 (287)
|..+.++.+.|.+.|+++....+.+ + .++.+.......+.++|+++++|.
T Consensus 20 dtN~~~la~~L~~~G~~v~~~~~v~--D----------------------------~~~~i~~~l~~a~~~~DlVI~tGG 69 (396)
T PRK03673 20 DTNAAWLADFFFHQGLPLSRRNTVG--D----------------------------NLDALVAILRERSQHADVLIVNGG 69 (396)
T ss_pred EhHHHHHHHHHHHCCCEEEEEEEcC--C----------------------------CHHHHHHHHHHHhccCCEEEEcCC
Q ss_pred CCH---HHHHHHHHHHHhCCCcEEEeC
Q 023130 210 IPD---SVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 210 ~~~---~~~~~~~~~a~~~g~~v~~D~ 233 (287)
+.+ +...+++.++ .|.++++|+
T Consensus 70 lGpt~dD~t~~avA~a--~g~~L~~d~ 94 (396)
T PRK03673 70 LGPTSDDLSALAAATA--AGEGLVLHE 94 (396)
T ss_pred CCCCCcccHHHHHHHH--cCCCceeCH
No 211
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=25.00 E-value=1e+02 Score=28.55 Aligned_cols=43 Identities=26% Similarity=0.325 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCC----CCCchhhcc-CCcEEecCHHH
Q 023130 215 NIQVAKAARSAGVPVIFDAGGMD----APIPQELLN-FIDILSPNESE 257 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~ll~-~~dil~~Ne~E 257 (287)
..++++.|+++|+|+++|.++-. ....++++. .+|++..+-+-
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdK 223 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDK 223 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecch
Confidence 45788999999999999998632 233445444 59999888653
No 212
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.92 E-value=3.8e+02 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=20.9
Q ss_pred EEeecCCchHHHHHHHHHhCCCCCC
Q 023130 124 VGQVGEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 124 ig~vG~D~~G~~i~~~L~~~gVd~~ 148 (287)
|+.+|-...|..+-..|.+.|.++.
T Consensus 7 I~iiG~G~~G~~lA~~l~~~G~~V~ 31 (308)
T PRK14619 7 IAILGAGAWGSTLAGLASANGHRVR 31 (308)
T ss_pred EEEECccHHHHHHHHHHHHCCCEEE
Confidence 6778888899999999999987654
No 213
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=24.89 E-value=2.3e+02 Score=25.99 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=25.7
Q ss_pred cccEEEEeCCC----CHHHHHHHHHHHHhCCCcEEEeCCC
Q 023130 200 KAGIVLLQREI----PDSVNIQVAKAARSAGVPVIFDAGG 235 (287)
Q Consensus 200 ~a~~v~~~g~~----~~~~~~~~~~~a~~~g~~v~~D~~~ 235 (287)
+.++++++... ....+.++.+.|+++|+.+++|-..
T Consensus 135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~ 174 (377)
T TIGR01324 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTW 174 (377)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 35677765421 2334788899999999999999874
No 214
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=24.50 E-value=1.1e+02 Score=24.39 Aligned_cols=45 Identities=18% Similarity=0.063 Sum_probs=27.0
Q ss_pred ecCchHHHHHHHHHHcCCCcEEEEeecCCch---HHHHHHHHHhCCCC
Q 023130 102 LAGGKGANQAACGAKLSHPTYFVGQVGEDAN---GKLITDALSGCGVR 146 (287)
Q Consensus 102 ~~GG~a~N~A~~la~LG~~~~lig~vG~D~~---G~~i~~~L~~~gVd 146 (287)
.-||.|+-+|+.|+..|.+|.++..--.+.. -+.-++.+++.|+.
T Consensus 36 nNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (169)
T PF03853_consen 36 NNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIK 83 (169)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-E
T ss_pred CChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCc
Confidence 4578888888888888888777443332223 34444455555544
No 215
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=24.43 E-value=3.8e+02 Score=25.09 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=15.8
Q ss_pred ecCchHHHHHH-HHHHcCCCcEEEE
Q 023130 102 LAGGKGANQAA-CGAKLSHPTYFVG 125 (287)
Q Consensus 102 ~~GG~a~N~A~-~la~LG~~~~lig 125 (287)
...|++..++. .+.+||.++..+-
T Consensus 180 ~~~G~~~~~~~~ll~~lg~~v~~~~ 204 (445)
T cd05803 180 SVNGAGGLLIPRLLEKLGCEVIVLN 204 (445)
T ss_pred CCCCcHHHHHHHHHHHcCCEEEEeC
Confidence 45666666654 7778888865443
No 216
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=24.17 E-value=4.5e+02 Score=22.38 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=25.7
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEe
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D 232 (287)
+.+.++|+++.+.. ..++-..+-+.++++++|++.-
T Consensus 110 ~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 110 ALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred HHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 56788998876543 3444556677889999998863
No 217
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.95 E-value=2.3e+02 Score=20.56 Aligned_cols=40 Identities=8% Similarity=-0.100 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEE
Q 023130 134 KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII 177 (287)
Q Consensus 134 ~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~ 177 (287)
+.+.+.+++.|+....-.. ..+.++...+.|++|.+-.+.
T Consensus 83 d~~~~~l~~~G~~i~~~p~----~~~~~~~~~~~DPdG~~ie~~ 122 (124)
T cd09012 83 DELVEKALAAGGKEFREPQ----DHGFMYGRSFADLDGHLWEVL 122 (124)
T ss_pred HHHHHHHHHCCCcccCCcc----cCCceEEEEEECCCCCEEEEE
Confidence 5688899999988643211 223456677899999876544
No 218
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=23.94 E-value=1.1e+02 Score=21.65 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 104 GGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 104 GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
+|.+...+..+...|.++.+++.+|. ..++.|++.||..
T Consensus 49 ~~~~~~~~~~l~~~~v~~vi~~~iG~-----~~~~~l~~~gI~v 87 (103)
T cd00851 49 GGAGGKAAEFLADEGVDVVIVGGIGP-----RALNKLRNAGIKV 87 (103)
T ss_pred CCCchHHHHHHHHcCCCEEEeCCCCc-----CHHHHHHHCCCEE
Confidence 34467788888889999999987765 4667889999886
No 219
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=23.87 E-value=3.9e+02 Score=21.56 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=61.3
Q ss_pred EEEEeecCCchHHHHHH--HHHhCCCCCCceEEccCCCCCCceEE-EEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhh
Q 023130 122 YFVGQVGEDANGKLITD--ALSGCGVRLDYMNVVKDGGVPTGHAV-VMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVV 198 (287)
Q Consensus 122 ~lig~vG~D~~G~~i~~--~L~~~gVd~~~v~~~~~~~~~T~~~~-v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l 198 (287)
...|.+.....-..++. .++..|..+-.+...- .|+... .+...+|...-.... . ...+ .+..+.+
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~----D~R~~~~~I~s~~g~~~~~~~~---~---~~~~-~~~~~~~ 73 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAI----DTRYGEDKIVSHDGISLEAIVD---P---IDNL-FEIIDIL 73 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEEST----SCCCCSSEEEHTTSCEEEEESS---E---ESSG-GGGGGGC
T ss_pred EEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecc----cCcCCCCeEEecCCCccccccc---c---hhhH-HHHHHHh
Confidence 45677777655554442 3566676665444332 344332 344455554333200 0 0111 1222333
Q ss_pred cc-ccEEEEeC--CCCHHHHHHHHHHHHhCCCcEEE---eCCCC--CCCCchhhccCCcEEe
Q 023130 199 KK-AGIVLLQR--EIPDSVNIQVAKAARSAGVPVIF---DAGGM--DAPIPQELLNFIDILS 252 (287)
Q Consensus 199 ~~-a~~v~~~g--~~~~~~~~~~~~~a~~~g~~v~~---D~~~~--~~~~~~~ll~~~dil~ 252 (287)
.. .+++.++- .++ +.+.++++.+...|++|++ |.... ..+....|++.+|-+.
T Consensus 74 ~~~~dvI~IDEaQFf~-~~i~~l~~~~~~~g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~ 134 (176)
T PF00265_consen 74 ENDYDVIGIDEAQFFD-EQIVQLVEILANKGIPVICAGLDTDFRGEPFGGSPRLLPLADKIT 134 (176)
T ss_dssp CTTCSEEEESSGGGST-TTHHHHHHHHHHTT-EEEEEEESB-TTSSB-TTHHHHHHH-SEEE
T ss_pred ccCCCEEEEechHhhH-HHHHHHHHHHHhCCCeEEEEeeCCccccCcchhHHHHHhhCCeEE
Confidence 33 89999863 244 3477888999999999876 44433 2344567777777654
No 220
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=23.78 E-value=1.3e+02 Score=25.04 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=33.2
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcE--EEeCCCCCCCCchhhccCCcEEe
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPV--IFDAGGMDAPIPQELLNFIDILS 252 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v--~~D~~~~~~~~~~~ll~~~dil~ 252 (287)
.++++.+.-+... ...++++..|++|+++ +++|... .+.++++++.+|++.
T Consensus 80 g~~~i~~H~E~~~-~~~~~i~~ik~~g~k~GialnP~T~-~~~~~~~l~~vD~Vl 132 (201)
T PF00834_consen 80 GADYITFHAEATE-DPKETIKYIKEAGIKAGIALNPETP-VEELEPYLDQVDMVL 132 (201)
T ss_dssp T-SEEEEEGGGTT-THHHHHHHHHHTTSEEEEEE-TTS--GGGGTTTGCCSSEEE
T ss_pred CCCEEEEcccchh-CHHHHHHHHHHhCCCEEEEEECCCC-chHHHHHhhhcCEEE
Confidence 4677777654332 3667889999999885 5566533 355678889999854
No 221
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=23.17 E-value=2.2e+02 Score=24.48 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhcc-CCcEEecCHHHHHhhcCC
Q 023130 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLN-FIDILSPNESELGRLTGM 264 (287)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~-~~dil~~Ne~E~~~l~g~ 264 (287)
+.....++..++.|+++++|==+..-.-+..+.. .+|++|.+..-...+...
T Consensus 136 ~~~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~ 188 (256)
T COG2200 136 DTALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETD 188 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccC
Confidence 3578899999999999999875432222333333 689999999998888764
No 222
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=22.92 E-value=3.9e+02 Score=23.54 Aligned_cols=102 Identities=20% Similarity=0.271 Sum_probs=55.0
Q ss_pred CcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhc
Q 023130 120 PTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVK 199 (287)
Q Consensus 120 ~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~ 199 (287)
++...|+-|+ .|+.+.+.+.+.++.......++ . ..+....-+ .|. .+- ..+ +.+......+.+.
T Consensus 2 ~V~V~Ga~Gk--MG~~v~~av~~~~~~Lv~~~~~~--~-~~~~~~~~~--~g~-~v~-v~~------~~~~~~~l~~~~~ 66 (275)
T TIGR02130 2 QIMVNGCPGK--MGKAVAEAADAAGLEIVPTSFGG--E-EEAENEAEV--AGK-EIL-LHG------PSEREARIGEVFA 66 (275)
T ss_pred eEEEeCCCCh--HHHHHHHHHhcCCCEEEeeEccc--c-ccccchhhh--ccc-cee-eec------cccccccHHHHHh
Confidence 4566677676 78888888877655543321221 1 111111111 011 111 111 1122222224444
Q ss_pred c-ccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCCC
Q 023130 200 K-AGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGMD 237 (287)
Q Consensus 200 ~-a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~ 237 (287)
. ++.|+++-..| +.+...++.+.++|+++++-..+..
T Consensus 67 ~~~d~VvIDFT~P-~~~~~n~~~~~~~gv~~ViGTTG~~ 104 (275)
T TIGR02130 67 KYPELICIDYTHP-SAVNDNAAFYGKHGIPFVMGTTGGD 104 (275)
T ss_pred hcCCEEEEECCCh-HHHHHHHHHHHHCCCCEEEcCCCCC
Confidence 4 78677875555 5577888999999999999887654
No 223
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=22.87 E-value=4.2e+02 Score=23.21 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=26.1
Q ss_pred eecCchHHHHHHHHHHcCC-CcEEEEeecCCchHHHHHHHHHh
Q 023130 101 TLAGGKGANQAACGAKLSH-PTYFVGQVGEDANGKLITDALSG 142 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG~-~~~lig~vG~D~~G~~i~~~L~~ 142 (287)
.-.||.|.-++.+|+.+|. +++++.+ +..-.+.+.+.+.+
T Consensus 133 lGaGGaaraia~aL~~~G~~~I~I~nR--~~~ka~~la~~l~~ 173 (284)
T PRK12549 133 LGAGGAGAAVAHALLTLGVERLTIFDV--DPARAAALADELNA 173 (284)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHHHHh
Confidence 4589999999999999997 4444433 11344555555544
No 224
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=22.76 E-value=73 Score=22.23 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=34.0
Q ss_pred eecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 101 TLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 101 ~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
...+|.+...+..+...|.++.+++.+ |....+.|++.||.+
T Consensus 36 ~~~~~~~~~~~~~l~~~~v~~li~~~i-----G~~~~~~L~~~gI~v 77 (94)
T PF02579_consen 36 NEGGGGGDKIAKFLAEEGVDVLICGGI-----GEGAFRALKEAGIKV 77 (94)
T ss_dssp CCSSCHSTHHHHHHHHTTESEEEESCS-----CHHHHHHHHHTTSEE
T ss_pred ccccccchhHHHHHHHcCCCEEEEeCC-----CHHHHHHHHHCCCEE
Confidence 445677888888888899999998886 456778999999986
No 225
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.45 E-value=94 Score=26.75 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEeCC
Q 023130 212 DSVNIQVAKAARSAGVPVIFDAG 234 (287)
Q Consensus 212 ~~~~~~~~~~a~~~g~~v~~D~~ 234 (287)
.+.++++++.|+++|+.|++|..
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hhhhhhhhhccccccceEEEeee
Confidence 35589999999999999999985
No 226
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=22.38 E-value=4.4e+02 Score=21.64 Aligned_cols=82 Identities=15% Similarity=0.285 Sum_probs=50.9
Q ss_pred ccccEEEEeCCCC---HHHHHHHHHHHHhCCCcEEEeCCCCC----CCCchhhccCCcEE------ecCHHHHHhhcCCC
Q 023130 199 KKAGIVLLQREIP---DSVNIQVAKAARSAGVPVIFDAGGMD----APIPQELLNFIDIL------SPNESELGRLTGMP 265 (287)
Q Consensus 199 ~~a~~v~~~g~~~---~~~~~~~~~~a~~~g~~v~~D~~~~~----~~~~~~ll~~~dil------~~Ne~E~~~l~g~~ 265 (287)
..+|.+-++|.-| ++.++++++.+. +-+.++..++.. ..+.+++..+..++ --..++++.++|..
T Consensus 90 ~g~d~vRiSG~EP~l~~EHvlevIeLl~--~~tFvlETNG~~~g~drslv~el~nr~nv~vRVsvKG~dpesF~kIT~as 167 (228)
T COG5014 90 RGCDLVRISGAEPILGREHVLEVIELLV--NNTFVLETNGLMFGFDRSLVDELVNRLNVLVRVSVKGWDPESFEKITGAS 167 (228)
T ss_pred cCCcEEEeeCCCccccHHHHHHHHHhcc--CceEEEEeCCeEEecCHHHHHHHhcCCceEEEEEecCCCHHHHHHHhcCC
Confidence 4689999988544 677888888873 445677776532 23344455443333 24678899999876
Q ss_pred CCCHHHHHHHHHHHhhh
Q 023130 266 TDSYEQISEAVVKCHKM 282 (287)
Q Consensus 266 ~~~~~~~~~~~~~l~~~ 282 (287)
.+-..-..++++.|+..
T Consensus 168 p~~F~~QL~aLr~L~~~ 184 (228)
T COG5014 168 PEYFRYQLKALRHLHGK 184 (228)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 54444455555655543
No 227
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=22.14 E-value=2.4e+02 Score=22.02 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=32.1
Q ss_pred hccccEEEE-eCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEe
Q 023130 198 VKKAGIVLL-QREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS 252 (287)
Q Consensus 198 l~~a~~v~~-~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~ 252 (287)
+.+-|++++ +..-....+.++++.|+++|++++.=.+... ..+.+.+|+.+
T Consensus 77 ~~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~----s~l~~~ad~~l 128 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDG----GKMAGLADIEL 128 (154)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC----CchhhhCCEEE
Confidence 455666654 3222234488999999999999887665432 23445677554
No 228
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=22.01 E-value=3.2e+02 Score=23.04 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=44.4
Q ss_pred HhhhccccEEEEeCCC--------CH---HHHHHHHHHHHhCC--CcEEEeCCCCCCCCchhhc-cCCcEEecCHHHHHh
Q 023130 195 LEVVKKAGIVLLQREI--------PD---SVNIQVAKAARSAG--VPVIFDAGGMDAPIPQELL-NFIDILSPNESELGR 260 (287)
Q Consensus 195 ~~~l~~a~~v~~~g~~--------~~---~~~~~~~~~a~~~g--~~v~~D~~~~~~~~~~~ll-~~~dil~~Ne~E~~~ 260 (287)
...+...|++++-+.- .+ +.+.++.+..+++| +++.+|-+-. .+-...+. ..+|++..- ..
T Consensus 123 ~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvG----Sa 197 (220)
T PRK08883 123 EYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAG----SA 197 (220)
T ss_pred HHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEe----HH
Confidence 3567778887763311 11 22333333333333 7788888744 23334444 468988876 34
Q ss_pred hcCCCCCCHHHHHHHHHHHhhh
Q 023130 261 LTGMPTDSYEQISEAVVKCHKM 282 (287)
Q Consensus 261 l~g~~~~~~~~~~~~~~~l~~~ 282 (287)
+++. +++.+..+..++....
T Consensus 198 If~~--~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 198 IFGQ--PDYKAVIDEMRAELAK 217 (220)
T ss_pred HhCC--CCHHHHHHHHHHHHHh
Confidence 6663 4566666666654444
No 229
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=22.01 E-value=1.4e+02 Score=23.91 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=37.2
Q ss_pred cCchHHHHHHHHHHcCC-CcEEEEeec-CCchHHHHHHHHHhCCCCCCceEEcc
Q 023130 103 AGGKGANQAACGAKLSH-PTYFVGQVG-EDANGKLITDALSGCGVRLDYMNVVK 154 (287)
Q Consensus 103 ~GG~a~N~A~~la~LG~-~~~lig~vG-~D~~G~~i~~~L~~~gVd~~~v~~~~ 154 (287)
.||-|...|..|+.-|. ++.++|+-+ .........+.|++.|..+.++..+-
T Consensus 9 ~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv 62 (181)
T PF08659_consen 9 LGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDV 62 (181)
T ss_dssp TSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--T
T ss_pred ccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCc
Confidence 57778888888888876 678888873 34456678899999999888776653
No 230
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=21.97 E-value=72 Score=27.73 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=20.7
Q ss_pred HHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHH
Q 023130 107 GANQAACGAKLSHPTYFVGQVGEDANGKLITDALS 141 (287)
Q Consensus 107 a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~ 141 (287)
+.|+|++|+++|.+|.++-. |..|.-+-+.|.
T Consensus 18 a~~lA~aLa~~G~kVg~lD~---Di~q~S~~r~l~ 49 (261)
T PF09140_consen 18 AVNLAVALARMGKKVGLLDL---DIRQPSLPRYLE 49 (261)
T ss_dssp HHHHHHHHHCTT--EEEEE-----TTT-HHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEEec---CCCCCCHHHHHh
Confidence 58999999999999888764 555655555553
No 231
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.96 E-value=2.2e+02 Score=21.64 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=36.0
Q ss_pred eeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCC
Q 023130 100 QTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRL 147 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~ 147 (287)
.....|+|.-+|-.+...|.++.+++.+|. .-++.|++.||++
T Consensus 47 ~~~~~g~G~~~a~~l~~~gvdvvi~~~iG~-----~a~~~l~~~GIkv 89 (121)
T COG1433 47 ASAEKGAGIRIAELLVDEGVDVVIASNIGP-----NAYNALKAAGIKV 89 (121)
T ss_pred ccccCcchHHHHHHHHHcCCCEEEECccCH-----HHHHHHHHcCcEE
Confidence 345678889999999999999999998766 4567899999996
No 232
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.87 E-value=1.2e+02 Score=25.66 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=34.0
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEE--eCCCCCCCCchhhccCCcEEe
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIF--DAGGMDAPIPQELLNFIDILS 252 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~--D~~~~~~~~~~~ll~~~dil~ 252 (287)
+++++.+..+... ...+.++..|++|++.-+ +|... .+..+.+++.+|++.
T Consensus 85 gad~I~~H~Ea~~-~~~~~l~~Ir~~g~k~GlalnP~T~-~~~i~~~l~~vD~Vl 137 (223)
T PRK08745 85 GATTISFHPEASR-HVHRTIQLIKSHGCQAGLVLNPATP-VDILDWVLPELDLVL 137 (223)
T ss_pred CCCEEEEcccCcc-cHHHHHHHHHHCCCceeEEeCCCCC-HHHHHHHHhhcCEEE
Confidence 5788877655332 267888999999988654 55432 344677888888653
No 233
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=21.74 E-value=3.1e+02 Score=23.52 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=30.0
Q ss_pred ccccEEEEeCCC--CHHHHHHHHHHHH-hCCCcEEEeCCCC
Q 023130 199 KKAGIVLLQREI--PDSVNIQVAKAAR-SAGVPVIFDAGGM 236 (287)
Q Consensus 199 ~~a~~v~~~g~~--~~~~~~~~~~~a~-~~g~~v~~D~~~~ 236 (287)
...|.+.+.|+. ..+.+.++++..| +.+.|+++-|+..
T Consensus 40 ~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 40 AGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred cCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 457999998864 3456788888888 8899999999753
No 234
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.65 E-value=1.3e+02 Score=23.16 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=20.9
Q ss_pred hccccEEEE-eCCCCHHHHHHHHHHHHhCCCcEEE
Q 023130 198 VKKAGIVLL-QREIPDSVNIQVAKAARSAGVPVIF 231 (287)
Q Consensus 198 l~~a~~v~~-~g~~~~~~~~~~~~~a~~~g~~v~~ 231 (287)
++.-|++++ +.+-....+.++++.||++|++|+-
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 677888765 3332334588999999999998863
No 235
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=21.64 E-value=1.5e+02 Score=22.95 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=25.9
Q ss_pred EEEeCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 023130 204 VLLQREIPDSVNIQVAKAARSAGVPVIFDA 233 (287)
Q Consensus 204 v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~ 233 (287)
||++|++..+.-.++.+.|++.+.+|.|..
T Consensus 3 VYLsGEIHtdWRe~I~~ga~~~~L~v~F~~ 32 (144)
T TIGR03646 3 VYLAGEIHTDWREEIKEGAKSKNLPIVFSG 32 (144)
T ss_pred EEEcCcccchHHHHHHHHHHHcCCCeEEec
Confidence 788999888777888899999999999955
No 236
>PRK07714 hypothetical protein; Provisional
Probab=21.60 E-value=3.2e+02 Score=19.70 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=23.5
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEE
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIF 231 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~ 231 (287)
.+.+|++....++....++...|+.+++|++.
T Consensus 34 ~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~ 65 (100)
T PRK07714 34 KAKLVLLSEDASVNTTKKITDKCTYYNVPMRK 65 (100)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 46777777777777777777777777877643
No 237
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=21.58 E-value=5.5e+02 Score=22.45 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=24.8
Q ss_pred ecCchHHHHHHHHHHcCCC-cEEEEeecCC-chHHHHHHHHHhC
Q 023130 102 LAGGKGANQAACGAKLSHP-TYFVGQVGED-ANGKLITDALSGC 143 (287)
Q Consensus 102 ~~GG~a~N~A~~la~LG~~-~~lig~vG~D-~~G~~i~~~L~~~ 143 (287)
-.||.|.-++.+++.+|.+ +.++.+--.. .-.+.+.+.|.+.
T Consensus 133 GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~ 176 (289)
T PRK12548 133 GAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE 176 (289)
T ss_pred CCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc
Confidence 3577777777788889986 6665542110 1344555556544
No 238
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.53 E-value=1.4e+02 Score=28.29 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCCCcEEEEe
Q 023130 106 KGANQAACGAKLSHPTYFVGQ 126 (287)
Q Consensus 106 ~a~N~A~~la~LG~~~~lig~ 126 (287)
.|..+|..++++|.+|.++-+
T Consensus 15 aG~~aA~~aa~~G~~V~lie~ 35 (471)
T PRK06467 15 AGYSAAFRAADLGLETVCVER 35 (471)
T ss_pred HHHHHHHHHHHCCCcEEEEec
Confidence 467888889999999988863
No 239
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.46 E-value=2.5e+02 Score=19.97 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEE
Q 023130 133 GKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSII 176 (287)
Q Consensus 133 G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~ 176 (287)
=+.+.+.+.+.|+........ ...+..+.+.|++|.+--+
T Consensus 80 l~~~~~~l~~~g~~~~~~~~~----~~~~~~~~~~DP~G~~ie~ 119 (122)
T cd08354 80 LAEWEAHLEAKGVAIESEVQW----PRGGRSLYFRDPDGNLLEL 119 (122)
T ss_pred HHHHHHHHHhcCCceeccccC----CCCeeEEEEECCCCCEEEE
Confidence 356788899999876443221 2456778889999987544
No 240
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=21.41 E-value=1.2e+02 Score=18.76 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=18.5
Q ss_pred ecCHHHHHhhcCCCCCCHHHHHHHHHHH
Q 023130 252 SPNESELGRLTGMPTDSYEQISEAVVKC 279 (287)
Q Consensus 252 ~~Ne~E~~~l~g~~~~~~~~~~~~~~~l 279 (287)
+++.+|+..|+|.. .+...++.+++.
T Consensus 2 fLT~~El~elTG~k--~~~~Q~~~L~~~ 27 (47)
T PF13986_consen 2 FLTDEELQELTGYK--RPSKQIRWLRRN 27 (47)
T ss_pred CCCHHHHHHHHCCC--CHHHHHHHHHHC
Confidence 57899999999954 455555555554
No 241
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=21.22 E-value=88 Score=24.03 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCHH
Q 023130 134 KLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPDS 213 (287)
Q Consensus 134 ~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~~ 213 (287)
-.+...|++.|+++..+-+.+ . --+.|-+.+ .+++....++..+++++++.- ..|+|
T Consensus 26 ~~vA~~L~~~G~dV~~tDi~~----~-------~a~~g~~~v-----------~DDif~P~l~iY~~a~lIYSi-RPP~E 82 (127)
T PF03686_consen 26 PEVAKKLKERGFDVIATDINP----R-------KAPEGVNFV-----------VDDIFNPNLEIYEGADLIYSI-RPPPE 82 (127)
T ss_dssp -HHHHHHHHHS-EEEEE-SS-----S-----------STTEE--------------SSS--HHHHTTEEEEEEE-S--TT
T ss_pred HHHHHHHHHcCCcEEEEECcc----c-------ccccCccee-----------eecccCCCHHHhcCCcEEEEe-CCChH
Confidence 456788999998865333322 1 001233322 133444455778899999865 56677
Q ss_pred HHHHHHHHHHhCCCcEEEeCCC
Q 023130 214 VNIQVAKAARSAGVPVIFDAGG 235 (287)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~ 235 (287)
....+++.|++.|+.+++-|=+
T Consensus 83 l~~~il~lA~~v~adlii~pL~ 104 (127)
T PF03686_consen 83 LQPPILELAKKVGADLIIRPLG 104 (127)
T ss_dssp SHHHHHHHHHHHT-EEEEE-BT
T ss_pred HhHHHHHHHHHhCCCEEEECCC
Confidence 7888999999999999987743
No 242
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=21.19 E-value=2.3e+02 Score=21.00 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=26.9
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEe
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIFD 232 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D 232 (287)
.+.+|++....++.+...+...|+.+++|++..
T Consensus 41 kaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~ 73 (108)
T PTZ00106 41 KAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHY 73 (108)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEe
Confidence 477888888888888888888888889988743
No 243
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.10 E-value=3e+02 Score=19.27 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEE
Q 023130 132 NGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII 177 (287)
Q Consensus 132 ~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~ 177 (287)
.=+.+.+.|++.|+......... ...+..+.+.|++|.+--+.
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~---~~~~~~~~~~DPdG~~iEi~ 109 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRV---QGEGRSIYFYDPDGHLLELH 109 (113)
T ss_pred HHHHHHHHHHHcCCccCCCcccc---CCCceEEEEECCCCCEEEEE
Confidence 45678899999999865322221 13567888889999875443
No 244
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=21.10 E-value=3.4e+02 Score=25.62 Aligned_cols=42 Identities=12% Similarity=0.221 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCcEEEEee------cCCchHHHHHHHHHhCCCCCC
Q 023130 107 GANQAACGAKLSHPTYFVGQV------GEDANGKLITDALSGCGVRLD 148 (287)
Q Consensus 107 a~N~A~~la~LG~~~~lig~v------G~D~~G~~i~~~L~~~gVd~~ 148 (287)
|.-.|..++++|.+++++..- .+....+.+.+.|++.||+..
T Consensus 195 g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~ 242 (475)
T PRK06327 195 GLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIH 242 (475)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEE
Confidence 556777888999999998642 122456778899999998753
No 245
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.08 E-value=2.5e+02 Score=20.73 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEecC
Q 023130 213 SVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSPN 254 (287)
Q Consensus 213 ~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~N 254 (287)
..+.++++.|+++|++++.=.+... ..+.+.+|+.+.-
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~----s~la~~ad~~l~~ 98 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDED----SPLAKLADYVIVY 98 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCC----CcHHHhCCEEEEc
Confidence 3478999999999998877554332 2355566665533
No 246
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=20.89 E-value=4.3e+02 Score=23.69 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=28.1
Q ss_pred hhhccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 196 EVVKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 196 ~~l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
+.+.++|+++++ .|.+...+++..+.+.|+ .++|.+..
T Consensus 45 ~~~~~~D~vFla--lp~~~s~~~~~~~~~~g~-~VIDlSad 82 (310)
T TIGR01851 45 KLLNAADVAILC--LPDDAAREAVSLVDNPNT-CIIDASTA 82 (310)
T ss_pred HhhcCCCEEEEC--CCHHHHHHHHHHHHhCCC-EEEECChH
Confidence 344678999885 466777888888877776 58899854
No 247
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=20.81 E-value=4.3e+02 Score=24.37 Aligned_cols=97 Identities=13% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCcEEEEeecCCchHHHHHHHHHhC-CCCCCceEEccCCCCCCceEEEEEcCCCCeeEEEeCCCCCCCCCcccCchhHhh
Q 023130 119 HPTYFVGQVGEDANGKLITDALSGC-GVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIIIVGGTNMSCWPEKFGDEDLEV 197 (287)
Q Consensus 119 ~~~~lig~vG~D~~G~~i~~~L~~~-gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~~~ga~~~~~~~~l~~~~~~~ 197 (287)
.++.++|.-|- .|..+.+.|.+. +++...+.... ..|..+....+ .+ ..+.. ...+++.. ..
T Consensus 39 ~kVaIvGATG~--vG~eLlrlL~~hP~~el~~l~s~~----saG~~i~~~~~----~l--~~~~~--~~~~~~~~---~~ 101 (381)
T PLN02968 39 KRIFVLGASGY--TGAEVRRLLANHPDFEITVMTADR----KAGQSFGSVFP----HL--ITQDL--PNLVAVKD---AD 101 (381)
T ss_pred cEEEEECCCCh--HHHHHHHHHHhCCCCeEEEEEChh----hcCCCchhhCc----cc--cCccc--cceecCCH---HH
Confidence 46777777666 799999999888 45544433221 22222211110 00 00100 00122221 23
Q ss_pred hccccEEEEeCCCCHHHHHHHHHHHHhCCCcEEEeCCCC
Q 023130 198 VKKAGIVLLQREIPDSVNIQVAKAARSAGVPVIFDAGGM 236 (287)
Q Consensus 198 l~~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~ 236 (287)
++++|++++. ++.+...+++... +.| ..++|.+..
T Consensus 102 ~~~~DvVf~A--lp~~~s~~i~~~~-~~g-~~VIDlSs~ 136 (381)
T PLN02968 102 FSDVDAVFCC--LPHGTTQEIIKAL-PKD-LKIVDLSAD 136 (381)
T ss_pred hcCCCEEEEc--CCHHHHHHHHHHH-hCC-CEEEEcCch
Confidence 5789999985 4666677777776 356 477888743
No 248
>PRK04296 thymidine kinase; Provisional
Probab=20.75 E-value=2.8e+02 Score=22.53 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=33.9
Q ss_pred cccEEEEeC--CCCHHHHHHHHHHHHhCCCcEEEeC---CCCC--CCCchhhccCCcEEe
Q 023130 200 KAGIVLLQR--EIPDSVNIQVAKAARSAGVPVIFDA---GGMD--APIPQELLNFIDILS 252 (287)
Q Consensus 200 ~a~~v~~~g--~~~~~~~~~~~~~a~~~g~~v~~D~---~~~~--~~~~~~ll~~~dil~ 252 (287)
+.++++++. .++.+.+.++++.++..|+.|++-. .... ......+++.+|.+.
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~ 137 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDFRGEPFEGSPYLLALADKVT 137 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCcccccCcCchHHHHHHhcCeEE
Confidence 468888875 2445557788899899998888733 2211 123356677777664
No 249
>PRK15394 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional
Probab=20.74 E-value=2.3e+02 Score=25.16 Aligned_cols=40 Identities=20% Similarity=0.144 Sum_probs=32.7
Q ss_pred eeecCchHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHH
Q 023130 100 QTLAGGKGANQAACGAKLSHPTYFVGQVGEDANGKLITDAL 140 (287)
Q Consensus 100 ~~~~GG~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L 140 (287)
.-.-=|. -+..-.+.+.|.+.+|+..+|-|..|+.+.+.+
T Consensus 14 ~~~~~g~-~~~~~~~~~~~~~a~f~~~~gpd~~g~~~~r~~ 53 (296)
T PRK15394 14 RGTREGV-PRLLEILSKHGIQASFFFSVGPDNMGRHLWRLL 53 (296)
T ss_pred cccccCH-HHHHHHHHHcCCCEEEEeccCCCchhHHHHHHh
Confidence 3344453 678889999999999999999999998877665
No 250
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=20.61 E-value=3.5e+02 Score=20.86 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEc
Q 023130 106 KGANQAACGAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVV 153 (287)
Q Consensus 106 ~a~N~A~~la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~ 153 (287)
.+.-.+..+.++|.++...+.+++|. +.|.+.|++.--..+.+...
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~--~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDP--EEIREILRKAVDEADVVLTT 73 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCH--HHHHHHHHHHHhCCCEEEEC
Confidence 45677888999999999999999983 45666666542233434443
No 251
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=20.58 E-value=1.6e+02 Score=28.09 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=18.5
Q ss_pred cCchHHHHHHHHHHcCCCcEEEEe
Q 023130 103 AGGKGANQAACGAKLSHPTYFVGQ 126 (287)
Q Consensus 103 ~GG~a~N~A~~la~LG~~~~lig~ 126 (287)
.|-.|+.+|+-|++-|.+|.++=+
T Consensus 14 GGi~G~~~A~~la~rG~~V~LlEk 37 (502)
T PRK13369 14 GGINGAGIARDAAGRGLKVLLCEK 37 (502)
T ss_pred CCHHHHHHHHHHHhCCCcEEEEEC
Confidence 455678888888888888888764
No 252
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.56 E-value=2.5e+02 Score=20.55 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEec
Q 023130 215 NIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILSP 253 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~~ 253 (287)
+.++++.|+++|++++.=.+... ..+.+.+|+.+.
T Consensus 62 ~~~~~~~a~~~g~~vi~iT~~~~----s~la~~ad~~l~ 96 (126)
T cd05008 62 TLAALRLAKEKGAKTVAITNVVG----STLAREADYVLY 96 (126)
T ss_pred HHHHHHHHHHcCCeEEEEECCCC----ChHHHhCCEEEE
Confidence 78999999999998876554321 235556666653
No 253
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.55 E-value=2.4e+02 Score=22.46 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEEe
Q 023130 214 VNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDILS 252 (287)
Q Consensus 214 ~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil~ 252 (287)
.+.++++.|+++|++++.=.+... .++.+.+|+++
T Consensus 87 ~~i~~~~~ak~~g~~ii~IT~~~~----s~la~~ad~~l 121 (179)
T TIGR03127 87 SLVTVAKKAKEIGATVAAITTNPE----STLGKLADVVV 121 (179)
T ss_pred HHHHHHHHHHHCCCeEEEEECCCC----CchHHhCCEEE
Confidence 378899999999999887554331 23555666654
No 254
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.30 E-value=4.3e+02 Score=24.00 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=42.6
Q ss_pred cEEEEeCCCC---HHHHHHHHHHHHh-CCC-----cEEEeCCCCCCCCchhhccC-------CcEEecCHHHHHhhcCCC
Q 023130 202 GIVLLQREIP---DSVNIQVAKAARS-AGV-----PVIFDAGGMDAPIPQELLNF-------IDILSPNESELGRLTGMP 265 (287)
Q Consensus 202 ~~v~~~g~~~---~~~~~~~~~~a~~-~g~-----~v~~D~~~~~~~~~~~ll~~-------~dil~~Ne~E~~~l~g~~ 265 (287)
.+|++++.-| .+.+.++++.+++ .|. .+.++.++.. +.+..+... .|+=.+|++.-..+++..
T Consensus 151 gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~-p~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~ 229 (342)
T PRK14454 151 NIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIV-PKIYELADENLQITLAISLHAPNDELRKKMMPIA 229 (342)
T ss_pred CEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCCh-hHHHHHHhhcccceEEEecCCCCHHHHHHhcCCc
Confidence 4566655433 3567777888776 466 6788887653 223333332 344456777777777742
Q ss_pred C-CCHHHHHHHHHH
Q 023130 266 T-DSYEQISEAVVK 278 (287)
Q Consensus 266 ~-~~~~~~~~~~~~ 278 (287)
. ...+++.+++++
T Consensus 230 ~~~~L~~l~~~~~~ 243 (342)
T PRK14454 230 NKYSIEELIEACKY 243 (342)
T ss_pred ccCCHHHHHHHHHH
Confidence 1 234455444433
No 255
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.26 E-value=2e+02 Score=19.31 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.1
Q ss_pred HHHHHHHHHhCCCcEEE
Q 023130 215 NIQVAKAARSAGVPVIF 231 (287)
Q Consensus 215 ~~~~~~~a~~~g~~v~~ 231 (287)
...+++.++++|++++.
T Consensus 63 ~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 63 LLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 77888999999988754
No 256
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=20.25 E-value=8.6e+02 Score=24.19 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=77.1
Q ss_pred ceeecCch-HHHHHHH-HHHcCCCcEEEEeecCCchHHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEE
Q 023130 99 SQTLAGGK-GANQAAC-GAKLSHPTYFVGQVGEDANGKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSII 176 (287)
Q Consensus 99 ~~~~~GG~-a~N~A~~-la~LG~~~~lig~vG~D~~G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~ 176 (287)
...+.|-. |...|.. +...|.+++.+|.+=- -....+.|++.||.+-. -.. . + ++|..-++
T Consensus 9 ~GfC~GV~rAi~~~~~~~~~~~~~i~~lg~ivH---N~~vv~~l~~~Gv~~v~--~~~--~---------~-~~~~~vii 71 (647)
T PRK00087 9 AGFCFGVKRAVDTAIKTAEELKGKIYTLGPLIH---NNQVVEKLKKKGIKPIE--DID--E---------L-NEGDTIII 71 (647)
T ss_pred CCcCccHHHHHHHHHHHHHhcCCCEEEeCCCcC---CHHHHHHHHHCCCEEeC--CHh--h---------C-CCCCEEEE
Confidence 34555554 5555554 3445778887777644 47899999999997631 111 1 1 12333222
Q ss_pred EeCCCCCCCCCcccCchhHhhhccccEEEEeCCCCH-HHHHHHHHHHHhCCCcEEE--eCCCCCCCCchhhcc---CCcE
Q 023130 177 IVGGTNMSCWPEKFGDEDLEVVKKAGIVLLQREIPD-SVNIQVAKAARSAGVPVIF--DAGGMDAPIPQELLN---FIDI 250 (287)
Q Consensus 177 ~~~ga~~~~~~~~l~~~~~~~l~~a~~v~~~g~~~~-~~~~~~~~~a~~~g~~v~~--D~~~~~~~~~~~ll~---~~di 250 (287)
...| ++++..+.++...+-++++..|. .-+...++...+.|-.+++ |.+... ...++. ..-+
T Consensus 72 ~aHG---------~~~~~~~~~~~~~~~viDaTCP~V~k~~~~~~~~~~~g~~ivi~G~~~HpE---v~g~~g~~~~~~~ 139 (647)
T PRK00087 72 RSHG---------VPPEVLEELKDKGLKVIDATCPFVKNIQKLAKKYYEEGYQIVIVGDKNHPE---VIGINGWCNNSAI 139 (647)
T ss_pred eCCC---------CCHHHHHHHHHCCCeEEECCCcCchHHHHHHHHHHhCCCEEEEEeCCCCCe---eeeeccccCCCEE
Confidence 2222 23344566666777778887773 2355666666667876666 555432 222333 3346
Q ss_pred EecCHHHHHhh
Q 023130 251 LSPNESELGRL 261 (287)
Q Consensus 251 l~~Ne~E~~~l 261 (287)
++-+.+|++.|
T Consensus 140 vv~~~~~~~~~ 150 (647)
T PRK00087 140 IVEDGEEAEKL 150 (647)
T ss_pred EECCHHHHhhC
Confidence 77788888775
No 257
>PRK08005 epimerase; Validated
Probab=20.23 E-value=1.4e+02 Score=25.06 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=33.2
Q ss_pred cccEEEEeCCCCHHHHHHHHHHHHhCCCcEEE--eCCCCCCCCchhhccCCcEEe
Q 023130 200 KAGIVLLQREIPDSVNIQVAKAARSAGVPVIF--DAGGMDAPIPQELLNFIDILS 252 (287)
Q Consensus 200 ~a~~v~~~g~~~~~~~~~~~~~a~~~g~~v~~--D~~~~~~~~~~~ll~~~dil~ 252 (287)
.++++.+.-+... ...++++..|+.|++.-+ +|+.. .+..+.+++.+|++.
T Consensus 81 gad~It~H~Ea~~-~~~~~l~~Ik~~G~k~GlAlnP~Tp-~~~i~~~l~~vD~Vl 133 (210)
T PRK08005 81 RPGWIFIHAESVQ-NPSEILADIRAIGAKAGLALNPATP-LLPYRYLALQLDALM 133 (210)
T ss_pred CCCEEEEcccCcc-CHHHHHHHHHHcCCcEEEEECCCCC-HHHHHHHHHhcCEEE
Confidence 5688777655332 256788999999988654 55432 344567778888653
No 258
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=20.22 E-value=2.9e+02 Score=22.67 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=43.4
Q ss_pred ceeecCchHHHHHHHHHHcCCCcEEEEe---ecCCch--------HHHHHHHHHhCCCCCCceEEccCCCCCCc
Q 023130 99 SQTLAGGKGANQAACGAKLSHPTYFVGQ---VGEDAN--------GKLITDALSGCGVRLDYMNVVKDGGVPTG 161 (287)
Q Consensus 99 ~~~~~GG~a~N~A~~la~LG~~~~lig~---vG~D~~--------G~~i~~~L~~~gVd~~~v~~~~~~~~~T~ 161 (287)
+...+|= .=+...+.++|....+++. +|...+ -..+.+.|++.||..+.+...+ ..+..
T Consensus 30 ~~~~~g~--i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cp--h~p~~ 99 (181)
T COG0241 30 FQFIPGV--IPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCP--HHPED 99 (181)
T ss_pred hccCccH--HHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECC--CCCCC
Confidence 3444543 5667778899999999998 666544 3457788899999999999988 54443
No 259
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.13 E-value=3.1e+02 Score=22.45 Aligned_cols=53 Identities=19% Similarity=0.074 Sum_probs=31.6
Q ss_pred hccccEEEE-eCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCchhhccCCcEE
Q 023130 198 VKKAGIVLL-QREIPDSVNIQVAKAARSAGVPVIFDAGGMDAPIPQELLNFIDIL 251 (287)
Q Consensus 198 l~~a~~v~~-~g~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~ll~~~dil 251 (287)
...-|++++ +..-....+.++++.|+++|++++.=.+.. ...+.++...+|+.
T Consensus 109 ~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~-~s~l~~l~~~ad~~ 162 (197)
T PRK13936 109 GQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRD-GGKMASLLLPEDVE 162 (197)
T ss_pred CCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC-CChhhhhhccCCEE
Confidence 345677654 322223348899999999999988855533 22334443345543
No 260
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.12 E-value=2.4e+02 Score=20.95 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCCceEEccCCCCCCceEEEEEcCCCCeeEEE
Q 023130 133 GKLITDALSGCGVRLDYMNVVKDGGVPTGHAVVMLQSDGQNSIII 177 (287)
Q Consensus 133 G~~i~~~L~~~gVd~~~v~~~~~~~~~T~~~~v~i~~~Ger~~~~ 177 (287)
=+.+.+.|++.|+......... ..-++++.+.|++|..--+.
T Consensus 79 ld~~~~~l~~~gv~~~~~~~~~---~~~g~~~yf~DPdG~~iEl~ 120 (131)
T cd08364 79 VDEYTERIKALGVEMKPPRPRV---QGEGRSIYFYDFDNHLFELH 120 (131)
T ss_pred HHHHHHHHHHCCCEEecCCccc---cCCceEEEEECCCCCEEEEe
Confidence 3568899999999864322111 12367888889999875544
Done!