Query 023132
Match_columns 287
No_of_seqs 29 out of 31
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 08:40:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08045 CDC14: Cell division 100.0 1.9E-54 4.1E-59 392.4 14.1 233 29-261 1-255 (257)
2 cd00020 ARM Armadillo/beta-cat 96.1 0.026 5.7E-07 41.4 6.8 98 121-220 18-115 (120)
3 cd00020 ARM Armadillo/beta-cat 94.1 0.18 3.8E-06 37.0 5.8 75 149-225 4-78 (120)
4 KOG2160 Armadillo/beta-catenin 93.2 1.8 3.8E-05 42.4 12.4 141 89-230 93-244 (342)
5 PF05536 Neurochondrin: Neuroc 89.9 3.5 7.6E-05 41.7 11.0 139 125-282 114-261 (543)
6 PF01365 RYDR_ITPR: RIH domain 84.8 2.1 4.5E-05 37.0 5.3 118 125-253 76-194 (207)
7 PF06371 Drf_GBD: Diaphanous G 84.5 9.2 0.0002 31.5 8.7 118 26-179 66-185 (187)
8 cd03561 VHS VHS domain family; 83.9 5.1 0.00011 32.9 7.0 96 148-243 33-132 (133)
9 PF10508 Proteasom_PSMB: Prote 77.3 12 0.00025 37.2 8.2 80 130-210 177-259 (503)
10 PLN03200 cellulose synthase-in 73.7 33 0.00072 40.8 11.6 96 129-225 166-261 (2102)
11 cd03565 VHS_Tom1 VHS domain fa 68.5 23 0.0005 29.9 6.8 88 117-244 46-135 (141)
12 PF11841 DUF3361: Domain of un 63.9 21 0.00046 31.7 6.0 140 61-208 7-150 (160)
13 cd03567 VHS_GGA VHS domain fam 63.0 40 0.00087 28.7 7.3 82 117-209 46-137 (139)
14 cd03561 VHS VHS domain family; 61.1 45 0.00098 27.3 7.1 78 117-205 45-133 (133)
15 PF05536 Neurochondrin: Neuroc 59.4 2.1E+02 0.0046 29.3 13.9 99 122-228 69-170 (543)
16 smart00185 ARM Armadillo/beta- 51.4 31 0.00067 21.4 3.7 37 184-222 2-38 (41)
17 KOG2027 Spindle pole body prot 50.5 14 0.00031 36.7 3.0 61 197-261 22-95 (388)
18 PLN03200 cellulose synthase-in 48.0 88 0.0019 37.6 9.0 86 120-205 199-285 (2102)
19 PF13618 Gluconate_2-dh3: Gluc 47.2 1.4E+02 0.003 23.8 7.7 78 167-278 2-85 (131)
20 PF05004 IFRD: Interferon-rela 46.0 2.7E+02 0.0057 26.4 11.1 111 167-285 101-238 (309)
21 PF00514 Arm: Armadillo/beta-c 45.5 17 0.00037 23.8 1.9 35 183-219 1-35 (41)
22 PF00790 VHS: VHS domain; Int 44.3 1.3E+02 0.0028 24.8 7.3 77 117-204 50-134 (140)
23 PF00790 VHS: VHS domain; Int 42.4 87 0.0019 25.8 6.0 81 147-227 37-120 (140)
24 PF04826 Arm_2: Armadillo-like 41.1 3E+02 0.0065 25.6 10.2 106 153-276 13-119 (254)
25 KOG4199 Uncharacterized conser 41.1 30 0.00064 35.3 3.5 72 141-213 93-164 (461)
26 smart00288 VHS Domain present 37.6 1.7E+02 0.0038 24.1 7.0 96 148-243 33-130 (133)
27 cd03572 ENTH_epsin_related ENT 35.6 2.8E+02 0.006 23.6 8.4 98 164-284 13-117 (122)
28 smart00288 VHS Domain present 34.0 2.5E+02 0.0055 23.2 7.4 79 117-206 45-132 (133)
29 cd03569 VHS_Hrs_Vps27p VHS dom 33.0 2.3E+02 0.0049 24.0 7.1 82 117-209 49-138 (142)
30 PF13328 HD_4: HD domain; PDB: 31.6 1.3E+02 0.0028 24.9 5.4 58 195-263 23-80 (153)
31 PF14664 RICTOR_N: Rapamycin-i 30.9 3.3E+02 0.0071 26.6 8.8 102 121-226 119-226 (371)
32 PF03224 V-ATPase_H_N: V-ATPas 30.8 1.2E+02 0.0025 28.0 5.5 92 128-221 168-266 (312)
33 KOG1087 Cytosolic sorting prot 29.5 1.6E+02 0.0035 30.3 6.6 78 125-243 53-132 (470)
34 PF01480 PWI: PWI domain; Int 27.4 40 0.00087 25.6 1.6 38 217-254 24-61 (77)
35 PF06025 DUF913: Domain of Unk 27.2 6E+02 0.013 24.9 9.9 156 38-205 33-207 (379)
36 PF09090 MIF4G_like_2: MIF4G l 24.5 2E+02 0.0043 26.2 5.7 92 138-229 59-161 (253)
37 PF12755 Vac14_Fab1_bd: Vacuol 24.2 2.2E+02 0.0048 22.7 5.3 61 137-205 34-97 (97)
38 cd03569 VHS_Hrs_Vps27p VHS dom 23.6 4.1E+02 0.0088 22.5 7.1 79 149-228 38-117 (142)
39 PF03398 Ist1: Regulator of Vp 23.2 68 0.0015 27.8 2.4 41 211-260 52-99 (165)
40 COG1578 Uncharacterized conser 21.3 1.6E+02 0.0034 28.9 4.6 54 196-249 12-68 (285)
41 cd06102 citrate_synt_like_2 Ci 21.1 1.5E+02 0.0034 28.1 4.5 57 128-191 63-119 (282)
42 PF15080 DUF4547: Domain of un 20.9 2.4E+02 0.0053 26.1 5.5 65 143-214 28-102 (196)
43 cd03568 VHS_STAM VHS domain fa 20.8 5.1E+02 0.011 22.0 7.2 94 149-243 34-129 (144)
No 1
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=100.00 E-value=1.9e-54 Score=392.41 Aligned_cols=233 Identities=30% Similarity=0.407 Sum_probs=211.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhHHHhchHHHHHHHhhhhccccchhhhhccCCchhhhhhh--------
Q 023132 29 GELANSLKQQRVQREITLALRTGLRDARAEFSFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSV-------- 100 (287)
Q Consensus 29 ~elv~sl~~qR~yRevtlaLR~gLRDA~AeFSFlR~rglr~ll~fl~s~a~sd~~i~LF~~sQs~~~lQ~~~-------- 100 (287)
||-.-++..++||+|.++++|+|||++++.|+|++.++.++.-++.|+++.++++|..|+++|+++|+|.-+
T Consensus 1 ME~~ls~~~d~L~s~~~~~ir~GLrq~~~lL~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~eF~~LQ~~Fe~Nl~ 80 (257)
T PF08045_consen 1 MESLLSLAFDNLYSEDTPKIRKGLRQLEGLLAQLCLSIRQSRNSSKRSSAASRKGLELFRDDPALREFQKLQEGFEWNLA 80 (257)
T ss_pred CchHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccccccccccchhhccchhhhhcccchhHHHHHHhHHHhhcchh
Confidence 456778999999999999999999999999999999998888888899999999999999999999999333
Q ss_pred ccccccccccccCCC-ccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHH-hhcCcchhhhHHHHHHH
Q 023132 101 DERVTSLDHIFTVDP-MRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNIL-STRGALEQGACLDALTS 178 (287)
Q Consensus 101 ~~~V~~l~hi~g~ep-~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL-~~rg~leq~AcLDtLl~ 178 (287)
...|.++++++|.++ ++.++|++|.+|++||||||||||+||+|+.++||+++++++||+| .++++.+|+||||||+|
T Consensus 81 ~~Lv~~l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~ 160 (257)
T PF08045_consen 81 SRLVSWLDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVC 160 (257)
T ss_pred hhhHHHHHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 568999999999999 8999999999999999999999999999999999999999999999 56899999999999999
Q ss_pred HHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhccCCCCCCc------------ccHHHHHHHHh
Q 023132 179 LMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPM------------ATIHEDIRRLL 246 (287)
Q Consensus 179 llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~------------a~~~ed~~~ll 246 (287)
+|+|+|+|+|+||+++|++.|++++|++++++++||||+||||||++++.++..+.- -+-++++-+-.
T Consensus 161 iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~~~~~~~~~~~~~t~~eKq~ll~~~ 240 (257)
T PF08045_consen 161 ILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPGSSSSGSEGRATKTTEEKQELLGRY 240 (257)
T ss_pred HHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCcccccccCCCcCcccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999864321 23556666667
Q ss_pred chhhHHHHHHhhhhc
Q 023132 247 GEKSASLIWAASQFG 261 (287)
Q Consensus 247 Ge~~asliwaa~~fg 261 (287)
+.++.++|-+...++
T Consensus 241 ~~~vd~Lv~dL~~~~ 255 (257)
T PF08045_consen 241 LSNVDDLVEDLNELK 255 (257)
T ss_pred cccHHHHHHHHHHhc
Confidence 777888887766554
No 2
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.14 E-value=0.026 Score=41.42 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=83.2
Q ss_pred CCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHH
Q 023132 121 PSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVA 200 (287)
Q Consensus 121 p~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va 200 (287)
.+++.-..-++..|...|-..+++....-+..+++.++++|....+-.+..++=+|--+.-+.+++...+.+.+++..+.
T Consensus 18 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~ 97 (120)
T cd00020 18 SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLV 97 (120)
T ss_pred cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHH
Confidence 34466777799999999998888888888889999999999998888999999999999888888888898888999999
Q ss_pred HHHhhcccccchhhhHHHHH
Q 023132 201 ELIRDKQVDENLRLRCGEFL 220 (287)
Q Consensus 201 ~llK~~qvd~~vRlKC~EFL 220 (287)
+++.+. +.++|-.+..+|
T Consensus 98 ~~l~~~--~~~~~~~a~~~l 115 (120)
T cd00020 98 NLLDSS--NEDIQKNATGAL 115 (120)
T ss_pred HHHhcC--CHHHHHHHHHHH
Confidence 999877 566776665554
No 3
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.07 E-value=0.18 Score=37.02 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=64.9
Q ss_pred hhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhh
Q 023132 149 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIG 225 (287)
Q Consensus 149 ~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~ 225 (287)
.+...++.++++|....+.....++.+|-.+-.+++++...|-+.+|++.+.+++.+. +.+++..|.-.|.-+..
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAA 78 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHcc
Confidence 3555788899999888778889999999999999999999999999999999999984 78999888888776643
No 4
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=1.8 Score=42.44 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=109.6
Q ss_pred ccCCchhhhhhh---cccccccccc------ccCCCccccCCCChHHH-HHHHHHHhhhcccCcchHHHhhhhHHHHHHH
Q 023132 89 QSQSVPELQDSV---DERVTSLDHI------FTVDPMRVTSPSTDAEV-ALALRVLEGCCLLHRESAILAHKHKAIKILM 158 (287)
Q Consensus 89 ~sQs~~~lQ~~~---~~~V~~l~hi------~g~ep~kitsp~TdsEi-aLALrVLeGccLLh~~s~~~a~r~~Avevll 158 (287)
+++++.|...+= ...|.+.|+- =|..|+---.-.+|++| ++|.|||--|.=+-|.|-..+=...|.+-|+
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 566666665222 2244444432 25555222344556666 6899999999999999999999999999999
Q ss_pred HHHhhcCcchh-hhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhccCC
Q 023132 159 NILSTRGALEQ-GACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGR 230 (287)
Q Consensus 159 niL~~rg~leq-~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~ 230 (287)
-+|....+.+. +..|=|+-|++---++-+..|-..+|.+-..+++.+.+++..++.|-..++- |+..+..+
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~-~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLS-LLLQEDKS 244 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHH-HHHHhhhh
Confidence 99999888877 7888899999999999999999999999999999999999999999875554 44444444
No 5
>PF05536 Neurochondrin: Neurochondrin
Probab=89.90 E-value=3.5 Score=41.75 Aligned_cols=139 Identities=19% Similarity=0.187 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-----hhhhhhhhccHHHH
Q 023132 125 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-----NQLDFEACNGIEEV 199 (287)
Q Consensus 125 sEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-----Nq~dFE~~~Gl~~V 199 (287)
+=+..++.+|.+.+ -|+.-+...-++.++..+..+... ++..+-..+-.|+.+|-+... +...|... +.++
T Consensus 114 ~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~i--l~~L 189 (543)
T PF05536_consen 114 ETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSI--LPSL 189 (543)
T ss_pred hHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHH--HHHH
Confidence 56778999999999 888888888889999999999988 555566677777777777763 33333333 3566
Q ss_pred HHHHhhcccccchhhhHHHHHHHHhhhcc--CCCCCCcccHHHHHHHHhchhhHHHHHHhh--hhcCCCChHHhHHHHHH
Q 023132 200 AELIRDKQVDENLRLRCGEFLLLLIGHVN--GRQLSPMATIHEDIRRLLGEKSASLIWAAS--QFGSTLNPEERLMALHI 275 (287)
Q Consensus 200 a~llK~~qvd~~vRlKC~EFLl~yl~~~~--~~~~~~~a~~~ed~~~llGe~~asliwaa~--~fgstlD~e~r~~aL~~ 275 (287)
++.++..+ .+.|..-++||..++-+.. +...++ ++++-+-||... -+.|.+.|++|..+|+.
T Consensus 190 a~~fs~~~--~~~kfell~~L~~~L~~~~~~~~~~~~------------~~~W~~~l~~gl~~iL~sr~~~~~R~~al~L 255 (543)
T PF05536_consen 190 ARDFSSFH--GEDKFELLEFLSAFLPRSPILPLESPP------------SPKWLSDLRKGLRDILQSRLTPSQRDPALNL 255 (543)
T ss_pred HHHHHhhc--cchHHHHHHHHHHhcCcCCccccccCC------------hhhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 77776443 4456666999999988883 222333 233334344333 46789999999999765
Q ss_pred HHHHHHh
Q 023132 276 QARRVLE 282 (287)
Q Consensus 276 qA~~vle 282 (287)
-| -+++
T Consensus 256 aa-~Ll~ 261 (543)
T PF05536_consen 256 AA-SLLD 261 (543)
T ss_pred HH-HHHH
Confidence 44 3443
No 6
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=84.83 E-value=2.1 Score=36.98 Aligned_cols=118 Identities=25% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 023132 125 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR 204 (287)
Q Consensus 125 sEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK 204 (287)
.=+..+.|+|...|--.+.-..+.++|.. .++.++.......-..-+|+|.+++=|.+.-...+.+-. ++++..+++
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~--~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~ 152 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKHLD--FLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLR 152 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH-------HHCCCH-TTHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHh--HHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHH
Confidence 33467899999999998888888888755 235555554444445679999999999999999998877 999999999
Q ss_pred hcccccchhhhHHHHHHHHhhhccCCCCCCcccHHHHHH-HHhchhhHHH
Q 023132 205 DKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIR-RLLGEKSASL 253 (287)
Q Consensus 205 ~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ed~~-~llGe~~asl 253 (287)
..|.+.. ||-|+-.=.. .++.|+...|+=|. .++.++-|.+
T Consensus 153 ~~gr~~~-------~L~~L~~lc~-~~g~pI~~nQ~lI~~~ll~~~~~dl 194 (207)
T PF01365_consen 153 KHGRQPR-------YLDFLSSLCV-CNGNPIPENQNLICQELLLEGEADL 194 (207)
T ss_dssp --------------------------------------------------
T ss_pred HcCCChH-------HHHHHhhhcc-cCCcCCHHHHHHHHHHHcCCCCccE
Confidence 9774432 5555443333 24557777887776 6776554444
No 7
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=84.46 E-value=9.2 Score=31.49 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch--hhHHHhchHHHHHHHhhhhccccchhhhhccCCchhhhhhhccc
Q 023132 26 TAVGELANSLKQQRVQREITLALRTGLRDARAEF--SFLRVRGLRSLLKILRSVAESDSTIHFFCQSQSVPELQDSVDER 103 (287)
Q Consensus 26 ~~v~elv~sl~~qR~yRevtlaLR~gLRDA~AeF--SFlR~rglr~ll~fl~s~a~sd~~i~LF~~sQs~~~lQ~~~~~~ 103 (287)
....-.++.+.....-.++-..|+..||-....| .|+-..|+..|++.|.........-
T Consensus 66 ~~p~~~i~~L~~~~~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~------------------- 126 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKS------------------- 126 (187)
T ss_dssp HHHHHHHHHHTTT--HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTC-------------------
T ss_pred hhHHHHHHHHHccCccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhc-------------------
Confidence 4555566667665555577777888888877777 8999999999999998844321110
Q ss_pred cccccccccCCCccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHH
Q 023132 104 VTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSL 179 (287)
Q Consensus 104 V~~l~hi~g~ep~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~l 179 (287)
..........+|-|--++=.+.....+.....++..+...|.+..+-....++|.|.++
T Consensus 127 -----------------~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 127 -----------------EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp -----------------TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred -----------------chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 11222223345555433333344556666666777777777666666666677766654
No 8
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.91 E-value=5.1 Score=32.87 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=69.8
Q ss_pred hhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhccHHHHHHHHhhc-ccccchhhhHHHHHHHHhh
Q 023132 148 AHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACNGIEEVAELIRDK-QVDENLRLRCGEFLLLLIG 225 (287)
Q Consensus 148 a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-Nq~dFE~~~Gl~~Va~llK~~-qvd~~vRlKC~EFLl~yl~ 225 (287)
.+-..|++.+..-|..+.+-+|.-.|..|=+++--+.. =...|-.-.-++++.++++++ +++.+||.||.|++.-+--
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56677888888888888888998888888888877755 445555556677888899887 9999999999999877654
Q ss_pred hccC--CCCCCcccHHHHHH
Q 023132 226 HVNG--RQLSPMATIHEDIR 243 (287)
Q Consensus 226 ~~~~--~~~~~~a~~~ed~~ 243 (287)
.... .+.|.+..++..+|
T Consensus 113 ~f~~~~~~~~~~~~~y~~lk 132 (133)
T cd03561 113 SFGGHSEDLPGIEDAYKLLK 132 (133)
T ss_pred HhcCCCccchHHHHHHHHHh
Confidence 4333 22444444444443
No 9
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=77.34 E-value=12 Score=37.21 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=67.6
Q ss_pred HHHHHhhhcccCcchHHHhhhhH---HHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhc
Q 023132 130 ALRVLEGCCLLHRESAILAHKHK---AIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDK 206 (287)
Q Consensus 130 ALrVLeGccLLh~~s~~~a~r~~---AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~ 206 (287)
=+||++=++-+...|...+.-.. .++-+++-|.+.-++.|-+|++.|--+-- ++.+..-.++.+.+.++.+++.+.
T Consensus 177 R~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 177 RCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 36888877777766666665555 67888888888889999999998877777 999999999999999999999999
Q ss_pred cccc
Q 023132 207 QVDE 210 (287)
Q Consensus 207 qvd~ 210 (287)
..|+
T Consensus 256 ~~dp 259 (503)
T PF10508_consen 256 EEDP 259 (503)
T ss_pred ccCC
Confidence 9988
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=73.75 E-value=33 Score=40.83 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=75.8
Q ss_pred HHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhccc
Q 023132 129 LALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQV 208 (287)
Q Consensus 129 LALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qv 208 (287)
.|..+|...|.-+.......-+..+|..++++|....+-.|..|.-+|..++..++.+....-+.+++...++++++ +.
T Consensus 166 ~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s-g~ 244 (2102)
T PLN03200 166 LLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ-GN 244 (2102)
T ss_pred HHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc-CC
Confidence 46678888887665555555667899999999998888899999999999999888777777789999999999975 45
Q ss_pred ccchhhhHHHHHHHHhh
Q 023132 209 DENLRLRCGEFLLLLIG 225 (287)
Q Consensus 209 d~~vRlKC~EFLl~yl~ 225 (287)
+..+|-.|+-=|.-+..
T Consensus 245 ~~~VRE~AA~AL~nLAs 261 (2102)
T PLN03200 245 EVSVRAEAAGALEALSS 261 (2102)
T ss_pred ChHHHHHHHHHHHHHhc
Confidence 66888777765544443
No 11
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=68.46 E-value=23 Score=29.89 Aligned_cols=88 Identities=19% Similarity=0.266 Sum_probs=50.7
Q ss_pred cccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccH
Q 023132 117 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGI 196 (287)
Q Consensus 117 kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl 196 (287)
||.+.+....+-+||.+|+-|.-+ |-.-.|+..|-+-++|-.
T Consensus 46 Rl~~~~n~~v~l~aL~LLe~~vkN---CG~~fh~eiask~Fl~e~----------------------------------- 87 (141)
T cd03565 46 RLNGNKNHKEVMLTLTVLETCVKN---CGHRFHVLVAKKDFIKDV----------------------------------- 87 (141)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHhhhHH-----------------------------------
Confidence 354444445666688888888754 445566665555554420
Q ss_pred HHHHHHHhh-cccccchhhhHHHHHHHHhhhccCC-CCCCcccHHHHHHH
Q 023132 197 EEVAELIRD-KQVDENLRLRCGEFLLLLIGHVNGR-QLSPMATIHEDIRR 244 (287)
Q Consensus 197 ~~Va~llK~-~qvd~~vRlKC~EFLl~yl~~~~~~-~~~~~a~~~ed~~~ 244 (287)
..+++.. ...+.+|+.||.|.+.=+--...+. +.+.+..+++.|++
T Consensus 88 --L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i~~~y~~L~~ 135 (141)
T cd03565 88 --LVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTGVVEVYEELKK 135 (141)
T ss_pred --HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHH
Confidence 1223332 2357789999999888776544332 23445555655553
No 12
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=63.94 E-value=21 Score=31.68 Aligned_cols=140 Identities=21% Similarity=0.254 Sum_probs=91.4
Q ss_pred hHHHhchHHHHHHHhhhhcccc-chhhhhc-cCCchhhhhhhccccccccccccCCC-ccccCCCChHHHH-HHHHHHhh
Q 023132 61 FLRVRGLRSLLKILRSVAESDS-TIHFFCQ-SQSVPELQDSVDERVTSLDHIFTVDP-MRVTSPSTDAEVA-LALRVLEG 136 (287)
Q Consensus 61 FlR~rglr~ll~fl~s~a~sd~-~i~LF~~-sQs~~~lQ~~~~~~V~~l~hi~g~ep-~kitsp~TdsEia-LALrVLeG 136 (287)
|.+-.|+.-|.+-..+--..+. .-+.-.+ =|++.+|-+-.-=.-.++++-|=.-= --|++++.|..|. .||.+||-
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 7888999888887776433100 0011111 13334443321101122333331111 1234556688887 59999999
Q ss_pred hcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhccc
Q 023132 137 CCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQV 208 (287)
Q Consensus 137 ccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qv 208 (287)
.++.++.=.....+..-++-++..|.....-.|...+=.+-|+++=+++..|. ++++.+..+|.
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~--------~i~~~l~~k~~ 150 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRK--------EIAETLSQKQI 150 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHH--------HHHHHHHHHHH
Confidence 99988887888888888889999999988889999999999999999888775 66666666554
No 13
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.98 E-value=40 Score=28.67 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=54.9
Q ss_pred cccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHH----HHHHHhhc------CcchhhhHHHHHHHHHhCCChh
Q 023132 117 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKI----LMNILSTR------GALEQGACLDALTSLMLDSSAN 186 (287)
Q Consensus 117 kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~Avev----llniL~~r------g~leq~AcLDtLl~llvDSs~N 186 (287)
||.+|. -.+.-+||.+|+-|.-+| -.-.|+..|-+- ++.++... .+..+.-+|..+-.-
T Consensus 46 rl~~~n-~~v~l~AL~LLe~~vkNC---G~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W------- 114 (139)
T cd03567 46 KIQSPQ-EKEALQALTVLEACMKNC---GERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW------- 114 (139)
T ss_pred HHcCCC-HHHHHHHHHHHHHHHHHc---CHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH-------
Confidence 444443 567788999999998654 455666666544 44555432 123556666655544
Q ss_pred hhhhhhhccHHHHHHHHhhcccc
Q 023132 187 QLDFEACNGIEEVAELIRDKQVD 209 (287)
Q Consensus 187 q~dFE~~~Gl~~Va~llK~~qvd 209 (287)
...|...+.+.++-..||..|+=
T Consensus 115 ~~~f~~~p~~~~~Y~~Lk~~G~i 137 (139)
T cd03567 115 TLELPHEPKIKEAYDMLKKQGII 137 (139)
T ss_pred HHHhcccchHHHHHHHHHHCCCc
Confidence 45788899999999999999863
No 14
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=61.07 E-value=45 Score=27.32 Aligned_cols=78 Identities=19% Similarity=0.144 Sum_probs=50.0
Q ss_pred cccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHH----HHHHHHHhhc-C--cchhhhHHHHHHHHHhCCChhhhh
Q 023132 117 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAI----KILMNILSTR-G--ALEQGACLDALTSLMLDSSANQLD 189 (287)
Q Consensus 117 kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~Av----evllniL~~r-g--~leq~AcLDtLl~llvDSs~Nq~d 189 (287)
||.+| +..+.-+||.+|+-|.-.+. ...|...|- ..+++++... . +..+.-+|..+... ...
T Consensus 45 rl~~~-n~~vql~AL~lLd~~vkNcg---~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W-------~~~ 113 (133)
T cd03561 45 KIKYG-NPHVQLLALTLLELLVKNCG---KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW-------SES 113 (133)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHhCC---hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH-------HHH
Confidence 44554 56888899999999987753 344444444 3366666653 2 33557777777665 334
Q ss_pred hh----hhccHHHHHHHHhh
Q 023132 190 FE----ACNGIEEVAELIRD 205 (287)
Q Consensus 190 FE----~~~Gl~~Va~llK~ 205 (287)
|. +++|+..+-..||.
T Consensus 114 f~~~~~~~~~~~~~y~~lk~ 133 (133)
T cd03561 114 FGGHSEDLPGIEDAYKLLKR 133 (133)
T ss_pred hcCCCccchHHHHHHHHHhC
Confidence 44 37888888877763
No 15
>PF05536 Neurochondrin: Neurochondrin
Probab=59.40 E-value=2.1e+02 Score=29.27 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHhhhcccCcchHHHhhhh--HHHHHHHHHHhhcCc-chhhhHHHHHHHHHhCCChhhhhhhhhccHHH
Q 023132 122 STDAEVALALRVLEGCCLLHRESAILAHKH--KAIKILMNILSTRGA-LEQGACLDALTSLMLDSSANQLDFEACNGIEE 198 (287)
Q Consensus 122 ~TdsEiaLALrVLeGccLLh~~s~~~a~r~--~AvevllniL~~rg~-leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~ 198 (287)
++.+=..+|+-||-.-|- .|. ...|.. .-|.+|++++...+. -...-|+-.|.++- =+|..++.|=+.+++..
T Consensus 69 ~~~~~~~LavsvL~~f~~-~~~--~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~ 144 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCR-DPE--LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPA 144 (543)
T ss_pred CHHHHHHHHHHHHHHHcC-Chh--hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHH
Confidence 566778899999988887 332 223332 236779999999888 77788999888888 99999999999999999
Q ss_pred HHHHHhhcccccchhhhHHHHHHHHhhhcc
Q 023132 199 VAELIRDKQVDENLRLRCGEFLLLLIGHVN 228 (287)
Q Consensus 199 Va~llK~~qvd~~vRlKC~EFLl~yl~~~~ 228 (287)
.++++.+ .+..+-++=+++..+.+..
T Consensus 145 L~ei~~~----~~~~~E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 145 LCEIIPN----QSFQMEIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHh----CcchHHHHHHHHHHHHHhc
Confidence 9999999 3333444545555554433
No 16
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=51.36 E-value=31 Score=21.39 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=28.3
Q ss_pred ChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHH
Q 023132 184 SANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLL 222 (287)
Q Consensus 184 s~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~ 222 (287)
+.|.+.+-+.+|++...++++ +-+.+++..++-.|..
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~n 38 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSN 38 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHH
Confidence 457888889999999999998 4467777766665543
No 17
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=50.50 E-value=14 Score=36.72 Aligned_cols=61 Identities=26% Similarity=0.390 Sum_probs=39.6
Q ss_pred HHHHHHHhhcccc-----------cchhhhHHHHHHHHhhhccCCC--CCCcccHHHHHHHHhchhhHHHHHHhhhhc
Q 023132 197 EEVAELIRDKQVD-----------ENLRLRCGEFLLLLIGHVNGRQ--LSPMATIHEDIRRLLGEKSASLIWAASQFG 261 (287)
Q Consensus 197 ~~Va~llK~~qvd-----------~~vRlKC~EFLl~yl~~~~~~~--~~~~a~~~ed~~~llGe~~asliwaa~~fg 261 (287)
..||++|+..+.+ ++-.+-|-|||.+|---+..+= ...+-..-+|++ |-.+||||||.+++
T Consensus 22 rdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~----EAVsSlifAA~R~~ 95 (388)
T KOG2027|consen 22 RDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLK----EAVSSLIFAAPRLS 95 (388)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHH----HHHHHHHHHhcccc
Confidence 4577777766644 4556889999988865554441 111122335555 56799999999998
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=48.04 E-value=88 Score=37.58 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=70.5
Q ss_pred CCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcC-cchhhhHHHHHHHHHhCCChhhhhhhhhccHHH
Q 023132 120 SPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRG-ALEQGACLDALTSLMLDSSANQLDFEACNGIEE 198 (287)
Q Consensus 120 sp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg-~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~ 198 (287)
+-.+......|..+|.-.|.-+++.+...-+..+|..++.+|.... +-.|..|.-+|..+=-+++.+...--+++|+..
T Consensus 199 sS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~ 278 (2102)
T PLN03200 199 SSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPA 278 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHH
Confidence 3345566667888888778777878888888999999999996543 456888899998888899999999999999999
Q ss_pred HHHHHhh
Q 023132 199 VAELIRD 205 (287)
Q Consensus 199 Va~llK~ 205 (287)
..+++..
T Consensus 279 LI~lL~s 285 (2102)
T PLN03200 279 LINATVA 285 (2102)
T ss_pred HHHHHhC
Confidence 9999874
No 19
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=47.15 E-value=1.4e+02 Score=23.80 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=49.8
Q ss_pred chhhhHHHHHHHHHh--CCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhccCCCCCCcccHHHHHHH
Q 023132 167 LEQGACLDALTSLML--DSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRR 244 (287)
Q Consensus 167 leq~AcLDtLl~llv--DSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ed~~~ 244 (287)
..|.++|+++.-+|+ |..+... .+...+|+-.++.+... ++-++
T Consensus 2 ~~e~~~L~ai~~~iiP~~~~pgA~------------------------~~~v~~fId~~l~~~~~----------~~~~~ 47 (131)
T PF13618_consen 2 AEEAATLAAIADTIIPADDTPGAS------------------------DAGVPEFIDRMLADCYM----------PEDRR 47 (131)
T ss_pred HHHHHHHHHHHHHhcCCCCCCChh------------------------hcChHHHHHHHHhcCCC----------HHHHH
Confidence 356777777777777 3223333 26777888888887221 22356
Q ss_pred HhchhhHHHHHHhh-hhc---CCCChHHhHHHHHHHHH
Q 023132 245 LLGEKSASLIWAAS-QFG---STLNPEERLMALHIQAR 278 (287)
Q Consensus 245 llGe~~asliwaa~-~fg---stlD~e~r~~aL~~qA~ 278 (287)
.+-.-.+.+-..+. .|| +-|++++|..-|+..++
T Consensus 48 ~~~~gl~~ld~~a~~~~g~~F~~l~~~~~~~lL~~~~~ 85 (131)
T PF13618_consen 48 AFRAGLAALDAYAQKRYGKSFAELSPAQREALLDALEK 85 (131)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhCCHHHHHHHHHHHHh
Confidence 66666666654443 667 77899999888876653
No 20
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=46.03 E-value=2.7e+02 Score=26.37 Aligned_cols=111 Identities=23% Similarity=0.248 Sum_probs=62.9
Q ss_pred chhhhHH--HHHHHHHhC-CChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHH--HhhhccCCCCCCcccHH--
Q 023132 167 LEQGACL--DALTSLMLD-SSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLL--LIGHVNGRQLSPMATIH-- 239 (287)
Q Consensus 167 leq~AcL--DtLl~llvD-Ss~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~--yl~~~~~~~~~~~a~~~-- 239 (287)
-||...+ =+|+||=+. .......|+....+ ...+++|......+|.+|++=|=. |++...+. .+.
T Consensus 101 ~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~--L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~------~~~~~ 172 (309)
T PF05004_consen 101 EEQALAARALALLALTLGAGEDSEEIFEELKPV--LKRILTDSSASPKARAACLEALAICTFVGGSDEE------ETEEL 172 (309)
T ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHH--HHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh------HHHHH
Confidence 4665443 367778776 34445667776664 456889998888999998854322 22222222 122
Q ss_pred -HHHHHHhc---------------hhhHHHHHHhhhhc----CCCChHHhHHHHHHHHHHHHhhcc
Q 023132 240 -EDIRRLLG---------------EKSASLIWAASQFG----STLNPEERLMALHIQARRVLESLD 285 (287)
Q Consensus 240 -ed~~~llG---------------e~~asliwaa~~fg----stlD~e~r~~aL~~qA~~vle~ld 285 (287)
+-+..+|. +..+.++-+|.+-| +++|+..-...++..-.++.+.||
T Consensus 173 ~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~ 238 (309)
T PF05004_consen 173 MESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLD 238 (309)
T ss_pred HHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 22222221 12356777777655 788875444445555555555554
No 21
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=45.51 E-value=17 Score=23.76 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=28.4
Q ss_pred CChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHH
Q 023132 183 SSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEF 219 (287)
Q Consensus 183 Ss~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EF 219 (287)
||+|.+..-+++|+....++|+ .-+.+++-.|+--
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~a 35 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWA 35 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHH
Confidence 5778888889999999999999 6777777766543
No 22
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.32 E-value=1.3e+02 Score=24.79 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=46.7
Q ss_pred cccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHH----HHHHHHHHhhcCcc----hhhhHHHHHHHHHhCCChhhh
Q 023132 117 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKA----IKILMNILSTRGAL----EQGACLDALTSLMLDSSANQL 188 (287)
Q Consensus 117 kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~A----vevllniL~~rg~l----eq~AcLDtLl~llvDSs~Nq~ 188 (287)
+|.+ ++..++.+||.||+-|.-.+ -.-.|...+ +..+..++...... .+..+++.+... ..
T Consensus 50 rl~~-~~~~vq~~aL~lld~lvkNc---g~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W-------~~ 118 (140)
T PF00790_consen 50 RLKH-GNPNVQLLALTLLDALVKNC---GPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW-------AE 118 (140)
T ss_dssp HHTT-SSHHHHHHHHHHHHHHHHHS---HHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH-------HH
T ss_pred HHhC-CCHHHHHHHHHHHHHHHHcC---CHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH-------HH
Confidence 3444 56678889999999998765 333444433 33444444444433 467777777655 56
Q ss_pred hhhhhccHHHHHHHHh
Q 023132 189 DFEACNGIEEVAELIR 204 (287)
Q Consensus 189 dFE~~~Gl~~Va~llK 204 (287)
.|...+.+..|.++.+
T Consensus 119 ~f~~~~~~~~i~~~y~ 134 (140)
T PF00790_consen 119 AFKSDPELSLIQDTYK 134 (140)
T ss_dssp HTTTSTTGHHHHHHHH
T ss_pred HHCCCCCchHHHHHHH
Confidence 6766666655555443
No 23
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=42.41 E-value=87 Score=25.82 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=58.6
Q ss_pred HhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChh-hhhhhhhccHHHHHHHHhhcccccc--hhhhHHHHHHHH
Q 023132 147 LAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSAN-QLDFEACNGIEEVAELIRDKQVDEN--LRLRCGEFLLLL 223 (287)
Q Consensus 147 ~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~N-q~dFE~~~Gl~~Va~llK~~qvd~~--vRlKC~EFLl~y 223 (287)
..+-+.|++.+..=|..+.+-+|.-+|-.|=+++--+.+. ...|-.-.=++.+.++++++..+.+ ||-|+.|.+.-+
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence 3344677888888888888889988877666666555322 2333333446789999999999988 999999998877
Q ss_pred hhhc
Q 023132 224 IGHV 227 (287)
Q Consensus 224 l~~~ 227 (287)
--..
T Consensus 117 ~~~f 120 (140)
T PF00790_consen 117 AEAF 120 (140)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6665
No 24
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=41.10 E-value=3e+02 Score=25.57 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=70.0
Q ss_pred HHHHHHHHHhh-cCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhccCCC
Q 023132 153 AIKILMNILST-RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQ 231 (287)
Q Consensus 153 AvevllniL~~-rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~~ 231 (287)
.++-++.+|.. +.|.+|+.++=|+-- .-..|.||.-.-++.|+.-|+.++.+. +.++|-| -+--+-+.+...
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n-~aaf~~nq~~Ir~~Ggi~lI~~lL~~p--~~~vr~~----AL~aL~Nls~~~ 85 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGN-SAAFPFNQDIIRDLGGISLIGSLLNDP--NPSVREK----ALNALNNLSVND 85 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHh-hccChhHHHHHHHcCCHHHHHHHcCCC--ChHHHHH----HHHHHHhcCCCh
Confidence 35778899985 678899988876644 688999999999999999999999995 5566633 233333333331
Q ss_pred CCCcccHHHHHHHHhchhhHHHHHHhhhhcCCCChHHhHHHHHHH
Q 023132 232 LSPMATIHEDIRRLLGEKSASLIWAASQFGSTLNPEERLMALHIQ 276 (287)
Q Consensus 232 ~~~~a~~~ed~~~llGe~~asliwaa~~fgstlD~e~r~~aL~~q 276 (287)
.-++.|+..+. -++... +...+|++.++.+|+..
T Consensus 86 -----en~~~Ik~~i~-----~Vc~~~-~s~~lns~~Q~agLrlL 119 (254)
T PF04826_consen 86 -----ENQEQIKMYIP-----QVCEET-VSSPLNSEVQLAGLRLL 119 (254)
T ss_pred -----hhHHHHHHHHH-----HHHHHH-hcCCCCCHHHHHHHHHH
Confidence 13344443322 222222 22568888888777654
No 25
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.09 E-value=30 Score=35.27 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=59.2
Q ss_pred CcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhhcccccchh
Q 023132 141 HRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIRDKQVDENLR 213 (287)
Q Consensus 141 h~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~~qvd~~vR 213 (287)
...|+.++|+..|...++-.+-.+..+.|+.|+-+|=++-+|.-. |-||-.+.|++-|+++|-++--+++|-
T Consensus 93 ~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~-qpdl~da~g~~vvv~lL~~~~~~~dlt 164 (461)
T KOG4199|consen 93 SLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHK-QPDLFDAEAMAVVLKLLALKVESEEVT 164 (461)
T ss_pred hHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcC-CcchhccccHHHHHHHHhcccchHHHH
Confidence 345667888888888888777778888999999999887776543 678889999999999999998888764
No 26
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=37.57 E-value=1.7e+02 Score=24.11 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=63.1
Q ss_pred hhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhh
Q 023132 148 AHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGH 226 (287)
Q Consensus 148 a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~ 226 (287)
.+-..|++-+..=|..+.+-+|.-.|..|=+++--+.. =...+-.-.-++...++++++...++||-|+.|.+.-.--.
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777887767666666655433 22333334446677788999888888999999998877665
Q ss_pred ccCC-CCCCcccHHHHHH
Q 023132 227 VNGR-QLSPMATIHEDIR 243 (287)
Q Consensus 227 ~~~~-~~~~~a~~~ed~~ 243 (287)
.... +.+.+..+++.++
T Consensus 113 f~~~~~~~~i~~~y~~L~ 130 (133)
T smart00288 113 FKNDPDLSQIVDVYDLLK 130 (133)
T ss_pred HcCCCCchHHHHHHHHHH
Confidence 5332 2333444555554
No 27
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.58 E-value=2.8e+02 Score=23.57 Aligned_cols=98 Identities=13% Similarity=0.261 Sum_probs=59.5
Q ss_pred cCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHH----HhhcccccchhhhHHHHHHHHhhhccCCCCCCcccHH
Q 023132 164 RGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAEL----IRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIH 239 (287)
Q Consensus 164 rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~l----lK~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ 239 (287)
...+..+..+.-+.-. .|+......+|.+. |++++ ++|++||.--|-++..+- +
T Consensus 13 d~~p~pgy~~~Eia~~---------t~~s~~~~~ei~d~L~kRL~~~~--~hVK~K~Lrilk~l~~~G--~--------- 70 (122)
T cd03572 13 DDEPTPGYLYEEIAKL---------TRKSVGSCQELLEYLLKRLKRSS--PHVKLKVLKIIKHLCEKG--N--------- 70 (122)
T ss_pred CCCCCchHHHHHHHHH---------HHcCHHHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHHHhhC--C---------
Confidence 3344445555544433 34433444445444 44444 999999998887777653 2
Q ss_pred HHHHHHhchhhHHHHHHhhhhcCCCCh---HHhHHHHHHHHHHHHhhc
Q 023132 240 EDIRRLLGEKSASLIWAASQFGSTLNP---EERLMALHIQARRVLESL 284 (287)
Q Consensus 240 ed~~~llGe~~asliwaa~~fgstlD~---e~r~~aL~~qA~~vle~l 284 (287)
++.++.+-+++ ..|=..-+|.-..|| +.--....-.|+.+++.|
T Consensus 71 ~~f~~~~~~~~-~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 71 SDFKRELQRNS-AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHhH-HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 45555555554 477777888888887 444455566677777654
No 28
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=33.97 E-value=2.5e+02 Score=23.17 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=45.9
Q ss_pred cccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhh----cCcc--hhhhHHHHHHHHHhCCChhhhhh
Q 023132 117 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST----RGAL--EQGACLDALTSLMLDSSANQLDF 190 (287)
Q Consensus 117 kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~----rg~l--eq~AcLDtLl~llvDSs~Nq~dF 190 (287)
||.+ ++..++-+||.+|+=|.-.| -.-.|...|=+-++|-|.. .... .+..+|..+... ...|
T Consensus 45 rl~~-~n~~v~l~AL~lLe~~vkNc---g~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W-------~~~f 113 (133)
T smart00288 45 RLNN-KNPHVALLALTLLDACVKNC---GSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW-------ADAF 113 (133)
T ss_pred HHcC-CCHHHHHHHHHHHHHHHHHC---CHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH-------HHHH
Confidence 3444 44678888999999987654 4455666665555555543 3332 456666655543 4567
Q ss_pred hhhccH---HHHHHHHhhc
Q 023132 191 EACNGI---EEVAELIRDK 206 (287)
Q Consensus 191 E~~~Gl---~~Va~llK~~ 206 (287)
..-+++ ..+-+.||..
T Consensus 114 ~~~~~~~~i~~~y~~L~~~ 132 (133)
T smart00288 114 KNDPDLSQIVDVYDLLKKK 132 (133)
T ss_pred cCCCCchHHHHHHHHHHHC
Confidence 544444 4444445543
No 29
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.99 E-value=2.3e+02 Score=24.00 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=51.9
Q ss_pred cccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhh----cC-cchhhhHHHHHHHHHhCCChhhhhhh
Q 023132 117 RVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILST----RG-ALEQGACLDALTSLMLDSSANQLDFE 191 (287)
Q Consensus 117 kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~----rg-~leq~AcLDtLl~llvDSs~Nq~dFE 191 (287)
||.+ .+..+..+||.+|+-|.-. |-.-+|+..|=+-++|-|.. .. +-.+.-||..+-+. ...|+
T Consensus 49 rl~~-~n~~vql~AL~LLe~~vkN---CG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W-------~~~f~ 117 (142)
T cd03569 49 RLLS-KNPNVQLYALLLLESCVKN---CGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAW-------ALAFR 117 (142)
T ss_pred HHcC-CChHHHHHHHHHHHHHHHH---CCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-------HHHhC
Confidence 4555 4577888999999999864 45556666666655555443 22 23456666666544 45666
Q ss_pred hh---ccHHHHHHHHhhcccc
Q 023132 192 AC---NGIEEVAELIRDKQVD 209 (287)
Q Consensus 192 ~~---~Gl~~Va~llK~~qvd 209 (287)
.- +++..+-+.||..|+.
T Consensus 118 ~~~~l~~i~~~y~~L~~~G~~ 138 (142)
T cd03569 118 NKPQLKYVVDTYQILKAEGHK 138 (142)
T ss_pred CCcccHHHHHHHHHHHHcCCC
Confidence 44 4466677778877763
No 30
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=31.65 E-value=1.3e+02 Score=24.86 Aligned_cols=58 Identities=29% Similarity=0.315 Sum_probs=35.5
Q ss_pred cHHHHHHHHhhcccccchhhhHHHHHHHHhhhccCCCCCCcccHHHHHHHHhchhhHHHHHHhhhhcCC
Q 023132 195 GIEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLIWAASQFGST 263 (287)
Q Consensus 195 Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~~a~~~ed~~~llGe~~asliwaa~~fgst 263 (287)
-+..|+.++.+-+.|+++..-| +|.=.+.+- .+. ++|++.||++.++++....+....
T Consensus 23 H~~~va~~l~~~~~d~~~i~aa--lLHD~ied~--------~~~-~~i~~~fg~~V~~lV~~lt~~~~~ 80 (153)
T PF13328_consen 23 HPLEVAEILAELGLDEETIAAA--LLHDVIEDT--------ETT-EDIEERFGEDVADLVDALTKIKKL 80 (153)
T ss_dssp HHHHHHHHHHTS---HHHHHHH--HHTTHHHHS--------S---HHHHHHHHHHHHHHHHHT---TTS
T ss_pred HHHHHHHHHHHcCCCHHHHhhh--eeecHHHhc--------CCH-HHHHHccChHHHHHHHHHHhcccc
Confidence 3568999999999888755444 333233321 123 999999999999999998865533
No 31
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=30.87 E-value=3.3e+02 Score=26.65 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=73.0
Q ss_pred CCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHH
Q 023132 121 PSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVA 200 (287)
Q Consensus 121 p~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va 200 (287)
-+.|.=--.++-.|-=.++.+|+-- .+-.++.++++.+.. |+.+...++=..+.-|+|+|..-+-|..-..++.+.
T Consensus 119 ~~~D~lr~~cletL~El~l~~P~lv---~~~gG~~~L~~~l~d-~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~ 194 (371)
T PF14664_consen 119 HEDDRLRRICLETLCELALLNPELV---AECGGIRVLLRALID-GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLL 194 (371)
T ss_pred CCchHHHHHHHHHHHHHHhhCHHHH---HHcCCHHHHHHHHHh-ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHH
Confidence 3566666667777777777777643 344567889999888 655555555555567889998877777777788888
Q ss_pred HHHhhcc-----cccch-hhhHHHHHHHHhhh
Q 023132 201 ELIRDKQ-----VDENL-RLRCGEFLLLLIGH 226 (287)
Q Consensus 201 ~llK~~q-----vd~~v-RlKC~EFLl~yl~~ 226 (287)
.-+-|.+ .++++ ||+|.-++...+..
T Consensus 195 apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr 226 (371)
T PF14664_consen 195 APFTDFHYRKIKDDRELERLQASAKAISTLLR 226 (371)
T ss_pred HhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence 8887773 34455 99999998776654
No 32
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=30.82 E-value=1.2e+02 Score=27.96 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHH-----hhcCcc--hhhhHHHHHHHHHhCCChhhhhhhhhccHHHHH
Q 023132 128 ALALRVLEGCCLLHRESAILAHKHKAIKILMNIL-----STRGAL--EQGACLDALTSLMLDSSANQLDFEACNGIEEVA 200 (287)
Q Consensus 128 aLALrVLeGccLLh~~s~~~a~r~~AvevllniL-----~~rg~l--eq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va 200 (287)
..+++.|+-. |-+++.+..+.+...++.++++| ..++.- .||..+=.+=.+-.+.. ....|-..+=+...+
T Consensus 168 ~~av~~L~~L-L~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~L~ 245 (312)
T PF03224_consen 168 YIAVQCLQNL-LRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPE-IAEELNKKYLIPLLA 245 (312)
T ss_dssp HHHHHHHHHH-HTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHH-hCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHH-HHHHHhccchHHHHH
Confidence 7788888877 68999999999999999999999 333333 45665544444444433 344555555788899
Q ss_pred HHHhhcccccchhhhHHHHHH
Q 023132 201 ELIRDKQVDENLRLRCGEFLL 221 (287)
Q Consensus 201 ~llK~~qvd~~vRlKC~EFLl 221 (287)
+++|...-.+=+|+-.+=|.-
T Consensus 246 ~i~~~~~KEKvvRv~la~l~N 266 (312)
T PF03224_consen 246 DILKDSIKEKVVRVSLAILRN 266 (312)
T ss_dssp HHHHH--SHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHH
Confidence 999999988888986654443
No 33
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.54 E-value=1.6e+02 Score=30.27 Aligned_cols=78 Identities=24% Similarity=0.281 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHh
Q 023132 125 AEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFEACNGIEEVAELIR 204 (287)
Q Consensus 125 sEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK 204 (287)
-+..+||-+||=|. +-|-..+|.+.|=|-++| +.++++|
T Consensus 53 ~vq~lALtlLE~cv---kNCG~~fh~~Va~k~fL~--------------------------------------emVk~~k 91 (470)
T KOG1087|consen 53 KVQLLALTLLETCV---KNCGYSFHLQVASKEFLN--------------------------------------EMVKRPK 91 (470)
T ss_pred HHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH--------------------------------------HHHhccc
Confidence 77788999999887 557777888777666633 4788899
Q ss_pred hcccccchhhhHHHHHHHHhhhccC--CCCCCcccHHHHHH
Q 023132 205 DKQVDENLRLRCGEFLLLLIGHVNG--RQLSPMATIHEDIR 243 (287)
Q Consensus 205 ~~qvd~~vRlKC~EFLl~yl~~~~~--~~~~~~a~~~ed~~ 243 (287)
+++.+-+||=|..++|.-+--...+ .-.|.+.+|.++++
T Consensus 92 ~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 92 NKPRDLKVREKILELIDTWQQAFCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred cCCcchhHHHHHHHHHHHHHHHccCCCCcchhHHHHHHHHH
Confidence 9999999999999998877666655 23677788888887
No 34
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=27.41 E-value=40 Score=25.62 Aligned_cols=38 Identities=11% Similarity=0.316 Sum_probs=26.7
Q ss_pred HHHHHHHhhhccCCCCCCcccHHHHHHHHhchhhHHHH
Q 023132 217 GEFLLLLIGHVNGRQLSPMATIHEDIRRLLGEKSASLI 254 (287)
Q Consensus 217 ~EFLl~yl~~~~~~~~~~~a~~~ed~~~llGe~~asli 254 (287)
.||.+=++.+-.....++...+++++..+||++.+.++
T Consensus 24 vdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv 61 (77)
T PF01480_consen 24 VDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFV 61 (77)
T ss_dssp HHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHH
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHH
Confidence 67766666654444566778899999999999998875
No 35
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=27.18 E-value=6e+02 Score=24.94 Aligned_cols=156 Identities=21% Similarity=0.276 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHH--------hhhh----hhh---cchhhHHHhchHHHHHHHhhhhc-cccchhhhhccCCchhhhhhhc
Q 023132 38 QRVQREITLALR--------TGLR----DAR---AEFSFLRVRGLRSLLKILRSVAE-SDSTIHFFCQSQSVPELQDSVD 101 (287)
Q Consensus 38 qR~yRevtlaLR--------~gLR----DA~---AeFSFlR~rglr~ll~fl~s~a~-sd~~i~LF~~sQs~~~lQ~~~~ 101 (287)
.|+-.||..++. .|.. +.. -..+|-|..=|++||||+...-. +-+.-+..|+. -+ ..
T Consensus 33 ~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl------~D-~s 105 (379)
T PF06025_consen 33 DRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNL------ID-SS 105 (379)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHHHHHHhccCCCcccccccc------cc-hh
Confidence 578889999998 2221 222 34789999999999999988766 22222222221 11 23
Q ss_pred cccccccccccCCCccccCCCChHHHHHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcc---hhhhHHHHHHH
Q 023132 102 ERVTSLDHIFTVDPMRVTSPSTDAEVALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGAL---EQGACLDALTS 178 (287)
Q Consensus 102 ~~V~~l~hi~g~ep~kitsp~TdsEiaLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~l---eq~AcLDtLl~ 178 (287)
....+|.+|+.-.. += .-.=.++|+.|+.-+.=..|.|=...++..-++.+++-+...+.+ +-=.||=..|+
T Consensus 106 ~L~~sL~~Il~n~~--~F---G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 106 SLLSSLKHILENPE--VF---GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred hHHHHHHHHHhCcc--cc---chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 45667777765432 11 124578899999999999999999999999999999999966655 33444444455
Q ss_pred HHhCCChhhhhhhhhccHHHHHHHHhh
Q 023132 179 LMLDSSANQLDFEACNGIEEVAELIRD 205 (287)
Q Consensus 179 llvDSs~Nq~dFE~~~Gl~~Va~llK~ 205 (287)
.|-=...-+..|.+.+=++..-+++-.
T Consensus 181 AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 181 AICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 555556667777777777777776654
No 36
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=24.53 E-value=2e+02 Score=26.19 Aligned_cols=92 Identities=21% Similarity=0.163 Sum_probs=66.7
Q ss_pred cccCcchHHHhhhhHHHHHHHHHHhhc---CcchhhhHHHHHHHHHhCCChh-------hhhhhhhccHHHHHHHHhhcc
Q 023132 138 CLLHRESAILAHKHKAIKILMNILSTR---GALEQGACLDALTSLMLDSSAN-------QLDFEACNGIEEVAELIRDKQ 207 (287)
Q Consensus 138 cLLh~~s~~~a~r~~AvevllniL~~r---g~leq~AcLDtLl~llvDSs~N-------q~dFE~~~Gl~~Va~llK~~q 207 (287)
|++|-.||.+-|-..+++-+.+.|..- ..-.|.++|+++..+--++|-. .+.+.=++...=|.-++.+.+
T Consensus 59 ~ll~~GSkS~SH~~~~lery~~~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~w~f~~~~ 138 (253)
T PF09090_consen 59 CLLHIGSKSFSHVLSALERYKEVLKELEAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVNWVFSPEN 138 (253)
T ss_dssp HHHHHTTTSHHHHHHHHHHTHHHHHHH-TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHHHHTSGGG
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHHHHcCccc
Confidence 678999999999999999999998864 4567899999999888877743 222333333344445555555
Q ss_pred -cccchhhhHHHHHHHHhhhccC
Q 023132 208 -VDENLRLRCGEFLLLLIGHVNG 229 (287)
Q Consensus 208 -vd~~vRlKC~EFLl~yl~~~~~ 229 (287)
...-.+.-|-|-+.--+..++.
T Consensus 139 ~~~~~~~~~~wE~l~~tl~k~~~ 161 (253)
T PF09090_consen 139 GNQELTRSYVWEILNRTLRKVTK 161 (253)
T ss_dssp -TTTTTSHHHHHHHHHHHHHHHH
T ss_pred cccchhhchHHHHHHHHHHHHHH
Confidence 4566788888888888887776
No 37
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=24.21 E-value=2.2e+02 Score=22.74 Aligned_cols=61 Identities=25% Similarity=0.297 Sum_probs=42.8
Q ss_pred hcccCcchHHHhhhhHHHHHHHHHHhhcCcch--h-hhHHHHHHHHHhCCChhhhhhhhhccHHHHHHHHhh
Q 023132 137 CCLLHRESAILAHKHKAIKILMNILSTRGALE--Q-GACLDALTSLMLDSSANQLDFEACNGIEEVAELIRD 205 (287)
Q Consensus 137 ccLLh~~s~~~a~r~~AvevllniL~~rg~le--q-~AcLDtLl~llvDSs~Nq~dFE~~~Gl~~Va~llK~ 205 (287)
-|+-+++.+. ||+|.|-+.||.-..+... . .-.+|+|.-++-|+.+|-+ +|-+-.-++|||
T Consensus 34 ~~~~D~d~rV---Ry~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr-----~~a~~Ld~llkd 97 (97)
T PF12755_consen 34 KCFDDQDSRV---RYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVR-----SAAELLDRLLKD 97 (97)
T ss_pred HHcCCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHH-----HHHHHHHHHhcC
Confidence 5778888887 9999999999987744222 1 5678888888888887754 334444455543
No 38
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=23.57 E-value=4.1e+02 Score=22.48 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCCh-hhhhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhc
Q 023132 149 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSA-NQLDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHV 227 (287)
Q Consensus 149 ~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~-Nq~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~ 227 (287)
+-+.|++.+..-|..+.+-+|.-.|..|=+++=-+.. =...+-.-.=+++..+++++ +++.+||-||.|.+.-.-...
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHh
Confidence 5677888888888877777887777766666654422 11111122224566777776 899999999999988776544
Q ss_pred c
Q 023132 228 N 228 (287)
Q Consensus 228 ~ 228 (287)
.
T Consensus 117 ~ 117 (142)
T cd03569 117 R 117 (142)
T ss_pred C
Confidence 3
No 39
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=23.25 E-value=68 Score=27.82 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=25.9
Q ss_pred chhhhHHHHHHHHhhhccCC-------CCCCcccHHHHHHHHhchhhHHHHHHhhhh
Q 023132 211 NLRLRCGEFLLLLIGHVNGR-------QLSPMATIHEDIRRLLGEKSASLIWAASQF 260 (287)
Q Consensus 211 ~vRlKC~EFLl~yl~~~~~~-------~~~~~a~~~ed~~~llGe~~asliwaa~~f 260 (287)
+..+.+.|+|-.|..-+..+ ...| +|+++ -.+|+|||+..+
T Consensus 52 d~~~e~~e~Le~yce~l~~r~~~i~~~k~~p-----~~l~e----Ai~siiyAa~r~ 99 (165)
T PF03398_consen 52 DNMIEAYEILELYCELLLARFSLIEKSKECP-----PELKE----AISSIIYAAPRC 99 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHCT-TSSS-----CCHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCC-----HHHHH----HHHHHHHHhhhc
Confidence 34577777777775543322 2233 34544 678999999998
No 40
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=21.29 E-value=1.6e+02 Score=28.85 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhhhccCCCCCC--ccc-HHHHHHHHhchh
Q 023132 196 IEEVAELIRDKQVDENLRLRCGEFLLLLIGHVNGRQLSP--MAT-IHEDIRRLLGEK 249 (287)
Q Consensus 196 l~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~~~~~~~~--~a~-~~ed~~~llGe~ 249 (287)
+..+...+|..-.|++.|++|..=.+-++......+..| +++ ||.-+.+++|.+
T Consensus 12 l~q~~~~~~~~t~ded~~~~~~~~~~~lls~~y~~~~~~a~~~t~ihr~v~k~~g~e 68 (285)
T COG1578 12 LRQAVNAVKLATDDEDLRSRIMSEALKLLSEEYGESAVPAIAGTLIHREVYKILGNE 68 (285)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhCcCCCcHHHHHHHHHHHHHHcCCC
Confidence 456777888888899999999988888888886666555 333 899999988864
No 41
>cd06102 citrate_synt_like_2 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and
Probab=21.06 E-value=1.5e+02 Score=28.09 Aligned_cols=57 Identities=23% Similarity=0.123 Sum_probs=46.9
Q ss_pred HHHHHHHhhhcccCcchHHHhhhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhhhhhh
Q 023132 128 ALALRVLEGCCLLHRESAILAHKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQLDFE 191 (287)
Q Consensus 128 aLALrVLeGccLLh~~s~~~a~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq~dFE 191 (287)
+-.||++-++++-.+++....|++.+-. -+++..+..++|+.+.+..||--|.-.|-
T Consensus 63 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~LVL~ADHgln~St~a 119 (282)
T cd06102 63 ARLLRLLAAALLGAAPSDAPVHRRLARA-------WGLDPAAADLLRRALVLLADHELNASTFA 119 (282)
T ss_pred HHHHHHHHHHhccCCCCcccHHHHHHHH-------hcCCHHHHHHHHHHHHHHhccCCCcHHHH
Confidence 8889999999999999988888854432 14455889999999999999998888874
No 42
>PF15080 DUF4547: Domain of unknown function (DUF4547)
Probab=20.92 E-value=2.4e+02 Score=26.13 Aligned_cols=65 Identities=20% Similarity=0.294 Sum_probs=45.8
Q ss_pred chHHHhhhhHHHHHHHHHHhhcC--cchh----hhHHHHHHHHHhCCChhhhhhhhhc----cHHHHHHHHhhcccccch
Q 023132 143 ESAILAHKHKAIKILMNILSTRG--ALEQ----GACLDALTSLMLDSSANQLDFEACN----GIEEVAELIRDKQVDENL 212 (287)
Q Consensus 143 ~s~~~a~r~~AvevllniL~~rg--~leq----~AcLDtLl~llvDSs~Nq~dFE~~~----Gl~~Va~llK~~qvd~~v 212 (287)
.|+++|.| .|...+.--+++-+ +.|+ |-+.|+|+|+ +.+.-|+++ |+-..|.+||++--.+.+
T Consensus 28 hsktlAsQ-aaQdE~Wtavl~l~FtsmElnilYSYvievL~cL------ht~VlEkLPdL~r~LPTlASvLrrKvkN~~I 100 (196)
T PF15080_consen 28 HSKTLASQ-AAQDEMWTAVLALKFTSMELNILYSYVIEVLICL------HTRVLEKLPDLVRGLPTLASVLRRKVKNKRI 100 (196)
T ss_pred HhHHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHhCcchHHHHHHHHhhchHH
Confidence 46777766 34555554444432 4455 7889999998 466777765 677899999999988888
Q ss_pred hh
Q 023132 213 RL 214 (287)
Q Consensus 213 Rl 214 (287)
|.
T Consensus 101 r~ 102 (196)
T PF15080_consen 101 RV 102 (196)
T ss_pred HH
Confidence 84
No 43
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.80 E-value=5.1e+02 Score=22.04 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHhhcCcchhhhHHHHHHHHHhCCChhh-hhhhhhccHHHHHHHHhhcccccchhhhHHHHHHHHhhhc
Q 023132 149 HKHKAIKILMNILSTRGALEQGACLDALTSLMLDSSANQ-LDFEACNGIEEVAELIRDKQVDENLRLRCGEFLLLLIGHV 227 (287)
Q Consensus 149 ~r~~AvevllniL~~rg~leq~AcLDtLl~llvDSs~Nq-~dFE~~~Gl~~Va~llK~~qvd~~vRlKC~EFLl~yl~~~ 227 (287)
+=+.|++.+..-|..+-+-+|.--|-.|=+++=-+...- ..+-.-.=++++.+++.++ ++.+||-|+.|.+.-+--..
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHh
Confidence 335666666666666556666555555555544443311 1111112246678888887 99999999999988765444
Q ss_pred cCC-CCCCcccHHHHHH
Q 023132 228 NGR-QLSPMATIHEDIR 243 (287)
Q Consensus 228 ~~~-~~~~~a~~~ed~~ 243 (287)
... +.+.+..+++.|+
T Consensus 113 ~~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 113 KNDPSLSLMSDLYKKLK 129 (144)
T ss_pred CCCcccHHHHHHHHHHH
Confidence 321 1223344444444
Done!