BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023133
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5BIV3|PPR35_ARATH Pentatricopeptide repeat-containing protein At1g11900
OS=Arabidopsis thaliana GN=At1g11900 PE=2 SV=1
Length = 367
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 153/287 (53%), Positives = 212/287 (73%), Gaps = 5/287 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLV--S 62
+EK + GN+S A LLQSL++KNI LP + + +L A+ E ND+ LS ++ +++L+
Sbjct: 77 VEKFTRDGNLSGAYDLLQSLQEKNICLPISVFKNLLAAAGELNDMKLSCRVFREVLILPG 136
Query: 63 SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA 122
LSSDCY N ARAFI TDDCT L ++E+ + + P +IV+NRIIFAFA++RQI+K
Sbjct: 137 KEPLSSDCYLNLARAFINTDDCTYLTSLLKEISESSLPYRLIVMNRIIFAFAETRQIDKV 196
Query: 123 LLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE-AGVVPDFISYNTLLN 181
L+I +K +CKPD+ITYN VLDILGR G VN++L ++MKE V + I+YNT+LN
Sbjct: 197 LMILKEMKEWECKPDVITYNSVLDILGRAGLVNEILGVLSTMKEDCSVSVNIITYNTVLN 256
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
+RK R D+CL+ + EM + GI+PDLL+YTA+IDS GR+GN++ESLRLF++MKQ+QIRP
Sbjct: 257 GMRKACRFDMCLVIYNEMVQCGIEPDLLSYTAVIDSLGRSGNVKESLRLFDEMKQRQIRP 316
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEM-NSSLSDLAGPKDFKRKAR 287
S+YVYR+LID LKK G A+ + +E+ N+S DLAGP+DFKR R
Sbjct: 317 SVYVYRALIDCLKKSGDFQSALQLSDELKNTSSLDLAGPQDFKRHLR 363
Score = 35.0 bits (79), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI-----RRLDLCLIYFREMGESGIK 205
V R+ F SMK +VP +S++ + + + + L ESG K
Sbjct: 7 VKRIPVYGGSFISMKHMMLVPADLSWSCSFSGMHSLINTGEEDEEELLKKIVNHSESGSK 66
Query: 206 P-DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
+ YT L++ F R GN+ + L ++++ I I V+++L+ ++ + L+
Sbjct: 67 IISKIDYTNLVEKFTRDGNLSGAYDLLQSLQEKNICLPISVFKNLLAAAGELNDMKLSCR 126
Query: 265 IFEEM 269
+F E+
Sbjct: 127 VFREV 131
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 133/266 (50%), Gaps = 3/266 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
++ LCKAGN A L +RD+ I LPN YN ++ + +D + ++ ++
Sbjct: 370 VDALCKAGNFGEAFDTLDVMRDQGI-LPNLHTYNTLICGLLRVHRLDDALELFGNMESLG 428
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
++ Y F + + D L E++ +I+ N +++ AK+ + +A
Sbjct: 429 VKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAK 488
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
IF +K + PD +TYN+++ +VG +++ + + M E G PD I N+L+N L
Sbjct: 489 QIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTL 548
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K R+D F M E +KP ++TY L+ G+ G I+E++ LF M Q+ P+
Sbjct: 549 YKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNT 608
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ +L D L K +V LA+ + +M
Sbjct: 609 ITFNTLFDCLCKNDEVTLALKMLFKM 634
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Query: 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164
+ N +I F K+ + + A +F + +PDL TY++++D L VGRV++ L+ F +
Sbjct: 928 IYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKEL 987
Query: 165 KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES-GIKPDLLTYTALIDSFGRTGN 223
KE+G+ PD + YN ++N L K RL+ L+ F EM S GI PDL TY +LI + G G
Sbjct: 988 KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGM 1047
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+EE+ +++N++++ + P+++ + +LI GK + A +++ M
Sbjct: 1048 VEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTM 1093
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 7/268 (2%)
Query: 10 CKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSSRTLS 67
CK NVS A L + P YN ++ E + I+++ + L V S
Sbjct: 760 CKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVF--LQVKSTGCI 817
Query: 68 SDCYT-NFA-RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL-L 124
D T NF A+ + +L +E+ + I N +I K+ ++ AL L
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+D + P TY ++D L + GR+ + F M + G P+ YN L+N
Sbjct: 878 YYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
K D F+ M + G++PDL TY+ L+D G ++E L F ++K+ + P +
Sbjct: 938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVV 997
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
Y +I+ L K +++ A+ +F EM +S
Sbjct: 998 CYNLIINGLGKSHRLEEALVLFNEMKTS 1025
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 119/237 (50%), Gaps = 9/237 (3%)
Query: 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNC-----VLVASAETNDIDLSFQILKDL 59
+I+ K+G+ +A+ + ++ K I PN C L + + F LKD+
Sbjct: 439 FIDYYGKSGDSVSALETFEKMKTKGI-APNIVACNASLYSLAKAGRDREAKQIFYGLKDI 497
Query: 60 LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
+ +++ Y + + + + + + E+++ +IVVN +I K+ ++
Sbjct: 498 GLVPDSVT---YNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRV 554
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
++A +F +K +K KP ++TYN +L LG+ G++ + + F M + G P+ I++NTL
Sbjct: 555 DEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTL 614
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
+ L K + L L +M + G PD+ TY +I + G ++E++ F+ MK+
Sbjct: 615 FDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKK 671
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/260 (22%), Positives = 123/260 (47%), Gaps = 1/260 (0%)
Query: 13 GNVSAAVRLLQSLRDKNIFL-PNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCY 71
G + A L+ +R+ L +YN ++ ++ + ++ + +++ S Y
Sbjct: 167 GGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTY 226
Query: 72 TNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKG 131
++ D ++ ++E+ + ++ I ++ +I +A I +
Sbjct: 227 SSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDD 286
Query: 132 LKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191
C PD++TY +++D L +++ F MK PD ++Y TLL+ R LD
Sbjct: 287 EGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDS 346
Query: 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251
++ EM + G PD++T+T L+D+ + GN E+ + M+ Q I P+++ Y +LI
Sbjct: 347 VKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLIC 406
Query: 252 NLKKMGKVDLAMTIFEEMNS 271
L ++ ++D A+ +F M S
Sbjct: 407 GLLRVHRLDDALELFGNMES 426
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 81/154 (52%)
Query: 113 FAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD 172
F+ +R ++ + ++ PD++T+ I++D L + G + + M++ G++P+
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397
Query: 173 FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFN 232
+YNTL+ L ++ RLD L F M G+KP TY ID +G++G+ +L F
Sbjct: 398 LHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFE 457
Query: 233 DMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
MK + I P+I + + +L K G+ A IF
Sbjct: 458 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIF 491
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 123/271 (45%), Gaps = 3/271 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
NG I L K+ + A+ + + + + F P+ Y+ ++V + DID +LK++
Sbjct: 192 NGLIHLLLKSRFCTEAMEVYRRMILEG-FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEME 250
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ +T R + ++ + ++ +I A +R+++
Sbjct: 251 TLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLD 310
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
A +F+ +K + KPD +TY +LD ++ + ++ M++ G VPD +++ L+
Sbjct: 311 CAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILV 370
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ L K M + GI P+L TY LI R ++++L LF +M+ ++
Sbjct: 371 DALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVK 430
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
P+ Y Y ID K G A+ FE+M +
Sbjct: 431 PTAYTYIVFIDYYGKSGDSVSALETFEKMKT 461
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/301 (21%), Positives = 121/301 (40%), Gaps = 38/301 (12%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I L +AG ++ A +L+ + D+ P+ Y ++ A +D + ++ + +
Sbjct: 265 IRVLGRAGKINEAYEILKRMDDEGCG-PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGR 323
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
Y F D + F E+ + ++ ++ A K+ +A
Sbjct: 324 HKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAF 383
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS-------------------- 163
D ++ P+L TYN ++ L RV R++D L F +
Sbjct: 384 DTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYY 443
Query: 164 ---------------MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
MK G+ P+ ++ N L +L K R F + + G+ PD
Sbjct: 444 GKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDS 503
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268
+TY ++ + + G I+E+++L ++M + P + V SLI+ L K +VD A +F
Sbjct: 504 VTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMR 563
Query: 269 M 269
M
Sbjct: 564 M 564
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 4/212 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ L K+G + A +L + + D PN YN ++ + + D + + K ++
Sbjct: 898 IDGLSKSGRLYEAKQLFEGMLDYGC-RPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
Y+ M + L + +E+ + ++ N II KS ++E+AL
Sbjct: 957 VRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016
Query: 124 LIFDHIKGLK-CKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182
++F+ +K + PDL TYN ++ LG G V + + ++ AG+ P+ ++N L+
Sbjct: 1017 VLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRG 1076
Query: 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTAL 214
+ + ++ M G P+ TY L
Sbjct: 1077 YSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 79/164 (48%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166
N ++ A ++E+ +FD ++ K D TY + L G + M+E
Sbjct: 122 NYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMRE 181
Query: 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226
G V + SYN L++ L K R + +R M G +P L TY++L+ G+ +I+
Sbjct: 182 FGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDS 241
Query: 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
+ L +M+ ++P++Y + I L + GK++ A I + M+
Sbjct: 242 VMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD 285
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 130/264 (49%), Gaps = 1/264 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFL-PNAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I L KAG + L S++++ L AYN V+ + ++ ++Q+L+++
Sbjct: 559 IHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGF 618
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+ Y + D + + EE ++++ + +I F K +I++A L
Sbjct: 619 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYL 678
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
I + + P+L T+N +LD L + +N+ L F SMKE P+ ++Y L+N L
Sbjct: 679 ILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLC 738
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
K+R+ + ++++EM + G+KP ++YT +I + GNI E+ LF+ K P
Sbjct: 739 KVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSA 798
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEE 268
Y ++I+ L + A ++FEE
Sbjct: 799 CYNAMIEGLSNGNRAMDAFSLFEE 822
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 117/241 (48%), Gaps = 2/241 (0%)
Query: 31 FLPNAYNCV--LVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLL 88
F P+ C+ ++ + N + + +++ + + YT AF + +L
Sbjct: 129 FGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMML 188
Query: 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148
+++ ++ ++ + +I FAK +++ AL + D +K D++ YN+ +D
Sbjct: 189 TLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSF 248
Query: 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
G+VG+V+ F ++ G+ PD ++Y +++ L K RLD + F + ++ P
Sbjct: 249 GKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCT 308
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268
Y +I +G G +E+ L + + PS+ Y ++ L+KMGKVD A+ +FEE
Sbjct: 309 YAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEE 368
Query: 269 M 269
M
Sbjct: 369 M 369
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 139/269 (51%), Gaps = 9/269 (3%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYN-CVLVAS-AETNDIDLSFQILKDLLVSS 63
+++LCK+ + A + + + D + P+ C L+ + +D ++++ + +L S
Sbjct: 419 VDRLCKSQKLDEACAMFEEM-DYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSD 477
Query: 64 RTLSSDCYTNFARAFI---MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+S YT+ + F +D + I+ + + Q SP+ + ++N + K+ + E
Sbjct: 478 CRTNSIVYTSLIKNFFNHGRKEDGHK--IYKDMINQNCSPD-LQLLNTYMDCMFKAGEPE 534
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
K +F+ IK + PD +Y+I++ L + G N+ F SMKE G V D +YN ++
Sbjct: 535 KGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ K +++ EM G +P ++TY ++ID + ++E+ LF + K ++I
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIE 654
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
++ +Y SLID K+G++D A I EE+
Sbjct: 655 LNVVIYSSLIDGFGKVGRIDEAYLILEEL 683
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 4/266 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ K G V A + + + N P+ Y ++ + N +D + ++ + L +
Sbjct: 245 IDSFGKVGKVDMAWKFFHEI-EANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNR 303
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
R + Y + + +E S S+I N I+ K ++++AL
Sbjct: 304 RVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEAL 363
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F+ +K P+L TYNI++D+L R G+++ SM++AG+ P+ + N +++ L
Sbjct: 364 KVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRL 422
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K ++LD F EM PD +T+ +LID G+ G ++++ +++ M R +
Sbjct: 423 CKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNS 482
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEM 269
VY SLI N G+ + I+++M
Sbjct: 483 IVYTSLIKNFFNHGRKEDGHKIYKDM 508
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 119/252 (47%), Gaps = 3/252 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ CK G V+ A +LL+ ++ K F P Y V+ A+ + +D ++ + ++
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKG-FEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKR 652
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
L+ Y++ F + + +EE++Q ++ N ++ A K+ +I +AL
Sbjct: 653 IELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEAL 712
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ F +K LKC P+ +TY I+++ L +V + N + M++ G+ P ISY T+++ L
Sbjct: 713 VCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGL 772
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K + F +G PD Y A+I+ ++ LF + +++ +
Sbjct: 773 AKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHN 832
Query: 244 YVYRSLIDNLKK 255
L+D L K
Sbjct: 833 KTCVVLLDTLHK 844
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 125/268 (46%), Gaps = 8/268 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLR----DKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61
I K G V +A+ LL ++ D +I L YN + + + +D++++ ++
Sbjct: 210 IRGFAKEGRVDSALSLLDEMKSSSLDADIVL---YNVCIDSFGKVGKVDMAWKFFHEIEA 266
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
+ YT+ + + + E + + N +I + + + ++
Sbjct: 267 NGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDE 326
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
A + + + P +I YN +L L ++G+V++ L F MK+ P+ +YN L++
Sbjct: 327 AYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILID 385
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
L + +LD M ++G+ P++ T ++D ++ ++E+ +F +M + P
Sbjct: 386 MLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTP 445
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ SLID L K+G+VD A ++E+M
Sbjct: 446 DEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 113/242 (46%)
Query: 33 PNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIE 92
P +YN +L+ A + D QIL ++ V+ S + + + + ++
Sbjct: 98 PESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQ 157
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
+ + + +I AF+ + L +F ++ L +P + + ++ + G
Sbjct: 158 MMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEG 217
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
RV+ L+ MK + + D + YN +++ K+ ++D+ +F E+ +G+KPD +TYT
Sbjct: 218 RVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYT 277
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
++I + ++E++ +F +++ + P Y Y ++I GK D A ++ E +
Sbjct: 278 SMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAK 337
Query: 273 LS 274
S
Sbjct: 338 GS 339
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 126/265 (47%), Gaps = 4/265 (1%)
Query: 9 LCKAGNVSAAVRLLQSLRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTL 66
LCKA + AV + + L +KN +P AYN +++ D ++ +L+
Sbjct: 283 LCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIP 341
Query: 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126
S Y + L EE+ + A+P ++ N +I ++ +++ A +
Sbjct: 342 SVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILIDMLCRAGKLDTAFELR 400
Query: 127 DHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI 186
D ++ P++ T NI++D L + ++++ F M PD I++ +L++ L K+
Sbjct: 401 DSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKV 460
Query: 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVY 246
R+D + +M +S + + + YT+LI +F G E+ +++ DM Q P + +
Sbjct: 461 GRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 520
Query: 247 RSLIDNLKKMGKVDLAMTIFEEMNS 271
+ +D + K G+ + +FEE+ +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKA 545
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166
N +I F K ++ KA + + +K +P ++TY V+D L ++ R+++ F K
Sbjct: 591 NIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 650
Query: 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226
+ + + Y++L++ K+ R+D + E+ + G+ P+L T+ +L+D+ + I E
Sbjct: 651 KRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINE 710
Query: 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+L F MK+ + P+ Y LI+ L K+ K + A ++EM
Sbjct: 711 ALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEM 753
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 3/273 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ LC+AG + A L S++ +F PN N ++ ++ +D + + +++
Sbjct: 384 IDMLCRAGKLDTAFELRDSMQKAGLF-PNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKV 442
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
T + + E+++ + IV +I F + E
Sbjct: 443 CTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGH 502
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
I+ + C PDL N +D + + G F +K VPD SY+ L++ L
Sbjct: 503 KIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGL 562
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K + F M E G D Y +ID F + G + ++ +L +MK + P++
Sbjct: 563 IKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTV 622
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
Y S+ID L K+ ++D A +FEE S +L
Sbjct: 623 VTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIEL 655
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%)
Query: 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREM 199
+YN +L ++ R + + M AG P + ++ K +L + M
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 200 GESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKV 259
+ +P YT LI +F + + L LF M++ P+++++ +LI K G+V
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219
Query: 260 DLAMTIFEEMNSSLSD 275
D A+++ +EM SS D
Sbjct: 220 DSALSLLDEMKSSSLD 235
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 17/236 (7%)
Query: 49 IDLSFQILKDLLVSSRTLSSDCYTNFAR--AFIMTDDCTQLLI-------------FIEE 93
D F +L DL + + C++ R F T C LL F ++
Sbjct: 195 FDALFSVLIDLGMLEEAIQ--CFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 252
Query: 94 VVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153
++ + ++ N +I K +E A +F+ +K PD +TYN ++D G+VGR
Sbjct: 253 MIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGR 312
Query: 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTA 213
++D + F MK+ PD I+YN L+N K +L + L ++REM +G+KP++++Y+
Sbjct: 313 LDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372
Query: 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
L+D+F + G ++++++ + DM++ + P+ Y Y SLID K+G + A + EM
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEM 428
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 97/169 (57%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
+ N +I F K +++ + F+ +K + C+PD+ITYN +++ + G++ L +
Sbjct: 298 VTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYRE 357
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
MK G+ P+ +SY+TL++ K + + ++ +M G+ P+ TYT+LID+ + GN
Sbjct: 358 MKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGN 417
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ ++ RL N+M Q + ++ Y +LID L ++ A +F +M+++
Sbjct: 418 LSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 466
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 134/273 (49%), Gaps = 17/273 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLS---FQILKDLL 60
I+ +CK G+V AA L + ++ + + +P+ YN ++ + +D + F+ +KD+
Sbjct: 269 IDCMCKEGDVEAARGLFEEMKFRGL-VPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 61 VSSRTLSSD----CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
++ + C+ F + I L F E+ +++ + ++ AF K
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIG-------LEFYREMKGNGLKPNVVSYSTLVDAFCKE 380
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
+++A+ + ++ + P+ TY ++D ++G ++D M + GV + ++Y
Sbjct: 381 GMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTY 440
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
L++ L R+ F +M +G+ P+L +Y ALI F + N++ +L L N++K
Sbjct: 441 TALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKG 500
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ I+P + +Y + I L + K++ A + EM
Sbjct: 501 RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEM 533
Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 120/274 (43%), Gaps = 7/274 (2%)
Query: 2 CNGYIEKLCKAGNVSAAVRLLQSL----RDKNIFLPNAYNCVLVASAETNDIDLSFQILK 57
CNG + + K G R + + +F YN ++ + D++ + + +
Sbjct: 230 CNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVF---TYNIMIDCMCKEGDVEAARGLFE 286
Query: 58 DLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117
++ + Y + F + F EE+ + +I N +I F K
Sbjct: 287 EMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFG 346
Query: 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
++ L + +KG KP++++Y+ ++D + G + + + M+ G+VP+ +Y
Sbjct: 347 KLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYT 406
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
+L++ KI L EM + G++ +++TYTALID ++E+ LF M
Sbjct: 407 SLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTA 466
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+ P++ Y +LI K +D A+ + E+
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKG 500
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 12/183 (6%)
Query: 99 SPESIIVVNRIIFA---FAKSRQIEKALL-------IFDHIKGLK--CKPDLITYNIVLD 146
S ES +V I+F + + + K ++ +FD + + C P ++ +
Sbjct: 141 SVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGFGVFDALFS 200
Query: 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206
+L +G + + + F+ MK V P S N LL+ K+ + D +F++M +G +P
Sbjct: 201 VLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARP 260
Query: 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
+ TY +ID + G++E + LF +MK + + P Y S+ID K+G++D + F
Sbjct: 261 TVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFF 320
Query: 267 EEM 269
EEM
Sbjct: 321 EEM 323
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 122/274 (44%), Gaps = 3/274 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I CK G + + + ++ N PN +Y+ ++ A + + + + D+
Sbjct: 336 NALINCFCKFGKLPIGLEFYREMKG-NGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMR 394
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ YT+ A + + E++Q+ +++ +I + +++
Sbjct: 395 RVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMK 454
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A +F + P+L +YN ++ + ++ L +K G+ PD + Y T +
Sbjct: 455 EAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
L + +++ + EM E GIK + L YT L+D++ ++GN E L L ++MK+ I
Sbjct: 515 WGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIE 574
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274
++ + LID L K V A+ F +++
Sbjct: 575 VTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFG 608
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 125/271 (46%), Gaps = 12/271 (4%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ LC A + A L + + +PN +YN ++ + ++D + ++L +L
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGV-IPNLASYNALIHGFVKAKNMDRALELLNEL--KG 500
Query: 64 RTLSSDC--YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
R + D Y F + + + E+ + + ++ ++ A+ KS +
Sbjct: 501 RGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTE 560
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGR---VGRVNDMLNEFASMKEAGVVPDFISYNT 178
L + D +K L + ++T+ +++D L + V + D N ++ + G+ + +
Sbjct: 561 GLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN--DFGLQANAAIFTA 618
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
+++ L K +++ F +M + G+ PD YT+L+D + GN+ E+L L + M +
Sbjct: 619 MIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIG 678
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
++ + Y SL+ L ++ A + EEM
Sbjct: 679 MKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 121/268 (45%), Gaps = 8/268 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLL 60
N I KA N+ A+ LL L+ + I P+ Y + I+ + ++ ++
Sbjct: 476 NALIHGFVKAKNMDRALELLNELKGRGI-KPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+S YT A+ + + T+ L ++E+ ++ +++ +I K++ +
Sbjct: 535 ECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVS 594
Query: 121 KALLIFDHIK---GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
KA+ F+ I GL+ + T ++D L + +V F M + G+VPD +Y
Sbjct: 595 KAVDYFNRISNDFGLQANAAIFT--AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYT 652
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
+L++ K + L +M E G+K DLL YT+L+ ++++ +M +
Sbjct: 653 SLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGE 712
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTI 265
I P + S++ ++G +D A+ +
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEAVEL 740
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 99/166 (59%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
++ N + A K +QI +F+ +K PD+ TYNI++ GRVG V++ +N F
Sbjct: 443 MMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEE 502
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
++ + PD ISYN+L+N L K +D + F+EM E G+ PD++TY+ L++ FG+T
Sbjct: 503 LERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTER 562
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+E + LF +M + +P+I Y L+D L+K G+ A+ ++ +M
Sbjct: 563 VEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKM 608
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 113/245 (46%), Gaps = 36/245 (14%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDLLVSSR 64
+E LC AG A+ +L + +K + YN V A + I
Sbjct: 414 LESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQI--------------- 458
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+ + E++ + I N +I +F + ++++A+
Sbjct: 459 --------------------SHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAIN 498
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
IF+ ++ CKPD+I+YN +++ LG+ G V++ F M+E G+ PD ++Y+TL+
Sbjct: 499 IFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFG 558
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
K R+++ F EM G +P+++TY L+D + G E++ L++ MKQQ + P
Sbjct: 559 KTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSI 618
Query: 245 VYRSL 249
Y L
Sbjct: 619 TYTVL 623
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 128 HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187
H KG+ D + YN V LG++ +++ + + F MK+ G PD +YN L+ + ++
Sbjct: 434 HEKGVVT--DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVG 491
Query: 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247
+D + F E+ S KPD+++Y +LI+ G+ G+++E+ F +M+++ + P + Y
Sbjct: 492 EVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYS 551
Query: 248 SLIDNLKKMGKVDLAMTIFEEM 269
+L++ K +V++A ++FEEM
Sbjct: 552 TLMECFGKTERVEMAYSLFEEM 573
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 132/269 (49%), Gaps = 10/269 (3%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I + + G AV L + + + L YN ++ A+ +D + Q+ SR
Sbjct: 277 IRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVF------SR 330
Query: 65 TLSSDCYTN-FARAFIMTDDCTQ-LLIFIEEVVQIASPE-SIIVVNRIIFAFAKSRQIEK 121
+ + C N + + ++ + L+ ++ VV+I+ + + + ++ +K + +
Sbjct: 331 MVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSE 390
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
A +F + K + +Y +L+ L G+ + + + + E GVV D + YNT+ +
Sbjct: 391 AHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFS 450
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
L K++++ F +M + G PD+ TY LI SFGR G ++E++ +F ++++ +P
Sbjct: 451 ALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKP 510
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
I Y SLI+ L K G VD A F+EM
Sbjct: 511 DIISYNSLINCLGKNGDVDEAHVRFKEMQ 539
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 112/230 (48%), Gaps = 13/230 (5%)
Query: 44 AETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESI 103
T D+ + +++K + + + C +A++ + D ++ E+ + I
Sbjct: 182 GNTEDLQMCLRLVKKWDLKMNSFTYKC---LLQAYLRSRDYSKAFDVYCEIRRGGHKLDI 238
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
N ++ A AK EKA +F+ +K C+ D TY I++ +GR+G+ ++ + F
Sbjct: 239 FAYNMLLDALAKD---EKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNE 295
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
M G+ + + YNTL+ L K + +D + F M E+G +P+ TY+ L++ G
Sbjct: 296 MITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQ 355
Query: 224 IEESLRLFN--DMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+ +RL ++ ++ + IY Y L+ L K+G V A +F +M S
Sbjct: 356 L---VRLDGVVEISKRYMTQGIYSY--LVRTLSKLGHVSEAHRLFCDMWS 400
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 35/270 (12%)
Query: 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94
AYN +L A A+ + + Q+ +D+ YT R C + + E+
Sbjct: 240 AYNMLLDALAKD---EKACQVFEDMKKRHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEM 296
Query: 95 VQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL------ 148
+ +++ N ++ AK + ++KA+ +F + C+P+ TY+++L++L
Sbjct: 297 ITEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQL 356
Query: 149 --------------------------GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182
++G V++ F M V + SY ++L +
Sbjct: 357 VRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLES 416
Query: 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242
L + + ++ E G+ D + Y + + G+ I LF MK+ P
Sbjct: 417 LCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPD 476
Query: 243 IYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
I+ Y LI + ++G+VD A+ IFEE+ S
Sbjct: 477 IFTYNILIASFGRVGEVDEAINIFEELERS 506
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 96/172 (55%)
Query: 101 ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160
+ + N ++ A K Q++ A I + + P++++Y+ V+D + GR ++ LN
Sbjct: 372 QDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNL 431
Query: 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220
F M+ G+ D +SYNTLL+ K+ R + L REM GIK D++TY AL+ +G+
Sbjct: 432 FGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGK 491
Query: 221 TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
G +E ++F +MK++ + P++ Y +LID K G AM IF E S+
Sbjct: 492 QGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSA 543
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 92/167 (55%)
Query: 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162
++ + +I FAK+ + ++AL +F ++ L D ++YN +L I +VGR + L+
Sbjct: 409 VVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILR 468
Query: 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222
M G+ D ++YN LL K + D F EM + P+LLTY+ LID + + G
Sbjct: 469 EMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGG 528
Query: 223 NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+E++ +F + K +R + +Y +LID L K G V A+++ +EM
Sbjct: 529 LYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEM 575
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 125/257 (48%), Gaps = 8/257 (3%)
Query: 9 LCKAGNVSAAVR-----LLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSS 63
+C G + A R + ++++F +YN +L A + +DL+F+IL + V
Sbjct: 348 VCSRGGLWEAARNLFDEMTNRRIEQDVF---SYNTLLDAICKGGQMDLAFEILAQMPVKR 404
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ Y+ F + L E+ + + N ++ + K + E+AL
Sbjct: 405 IMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEAL 464
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
I + + K D++TYN +L G+ G+ +++ F MK V+P+ ++Y+TL++
Sbjct: 465 DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGY 524
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K + FRE +G++ D++ Y+ALID+ + G + ++ L ++M ++ I P++
Sbjct: 525 SKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNV 584
Query: 244 YVYRSLIDNLKKMGKVD 260
Y S+ID + +D
Sbjct: 585 VTYNSIIDAFGRSATMD 601
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG-RVNDMLNE 160
++ + +I A+ +S E+A+ +F+ +K +P+L+TYN V+D G+ G +
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326
Query: 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220
F M+ GV PD I++N+LL + + F EM I+ D+ +Y L+D+ +
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICK 386
Query: 221 TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
G ++ + + M ++I P++ Y ++ID K G+ D A+ +F EM
Sbjct: 387 GGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEM 435
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 106/227 (46%), Gaps = 3/227 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N ++ +CK G + A +L + K I +PN +Y+ V+ A+ D + + ++
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPVKRI-MPNVVSYSTVIDGFAKAGRFDEALNLFGEMR 436
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
L Y + + L + E+ + + ++ N ++ + K + +
Sbjct: 437 YLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYD 496
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+ +F +K P+L+TY+ ++D + G + + F K AG+ D + Y+ L+
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEES 227
+ L K + + EM + GI P+++TY ++ID+FGR+ ++ S
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRS 603
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 144 VLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG 203
++ LGR G+V F + G +++ L++ + + + F M E G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 204 IKPDLLTYTALIDSFGRTG-NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262
++P+L+TY A+ID+ G+ G ++ + F++M++ ++P + SL+ + G + A
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358
Query: 263 MTIFEEM 269
+F+EM
Sbjct: 359 RNLFDEM 365
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
+ +++ L + ++ + F G + ++ALI ++GR+G EE++ +FN MK+
Sbjct: 237 SAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKE 296
Query: 237 QQIRPSIYVYRSLIDNLKKMG-KVDLAMTIFEEM 269
+RP++ Y ++ID K G + F+EM
Sbjct: 297 YGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEM 330
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 27/158 (17%)
Query: 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN------- 155
+++ + +I A K+ + A+ + D + P+++TYN ++D GR ++
Sbjct: 549 VVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSN 608
Query: 156 --------DMLNEFASMKEAGVVPDFISYNTLLNNL------RKIRRLDLCLIYFREMGE 201
L+ + V+ F T NN ++ L L FR+M +
Sbjct: 609 GGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQ 668
Query: 202 SGIKPDLLTYTALIDSFGRTGNIE------ESLRLFND 233
IKP+++T++A++++ R + E E LRLF++
Sbjct: 669 LEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN 706
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 138/268 (51%), Gaps = 7/268 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ LCK ++ A+ L + + K I PN Y+ ++ + ++L D++
Sbjct: 260 NTIIDGLCKYKHMDDALNLFKEMETKGI-RPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 61 VSSRTLSSDCYTNFA--RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
R ++ D +T A AF+ + +E+V+ + SI+ + +I F +
Sbjct: 319 --ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 376
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
+++A +F+ + C PD++TYN ++ + RV + + F M + G+V + ++YN
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNI 436
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
L+ L + D+ F+EM G+ P+++TY L+D + G +E+++ +F +++ +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
+ P+IY Y +I+ + K GKV+ +F
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLF 524
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 101/185 (54%)
Query: 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144
++ + ++++ + + N +I + +A+ + D + C+PDL+TY +V
Sbjct: 168 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVV 227
Query: 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI 204
++ L + G + N M++ + P + YNT+++ L K + +D L F+EM GI
Sbjct: 228 VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287
Query: 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
+P+++TY++LI G ++ RL +DM +++I P ++ + +LID K GK+ A
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 265 IFEEM 269
+++EM
Sbjct: 348 LYDEM 352
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 130/267 (48%), Gaps = 5/267 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I LC G S A RLL + ++ I P+ ++ ++ A + + + ++ +++ S
Sbjct: 298 ISCLCNYGRWSDASRLLSDMIERKIN-PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRS 356
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
S Y++ F M D + E +V ++ N +I F K +++E+ +
Sbjct: 357 IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGM 416
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE-FASMKEAGVVPDFISYNTLLNN 182
+F + + +TYNI++ L + G DM E F M GV P+ ++YNTLL+
Sbjct: 417 EVFREMSQRGLVGNTVTYNILIQGLFQAGDC-DMAQEIFKEMVSDGVPPNIMTYNTLLDG 475
Query: 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242
L K +L+ ++ F + S ++P + TY +I+ + G +E+ LF ++ + ++P
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535
Query: 243 IYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ Y ++I + G + A +F+EM
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEM 562
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 133/277 (48%), Gaps = 19/277 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDL---- 59
+ LCK G+ A LL + ++ P YN ++ + +D + + K++
Sbjct: 228 VNGLCKRGDTDLAFNLLNKM-EQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKG 286
Query: 60 ----LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115
+V+ +L S C N+ R D ++LL ++++ + + +I AF K
Sbjct: 287 IRPNVVTYSSLIS-CLCNYGR----WSDASRLL---SDMIERKINPDVFTFSALIDAFVK 338
Query: 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS 175
++ +A ++D + P ++TY+ +++ R+++ F M PD ++
Sbjct: 339 EGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVT 398
Query: 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235
YNTL+ K +R++ + FREM + G+ + +TY LI + G+ + + +F +M
Sbjct: 399 YNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMV 458
Query: 236 QQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ P+I Y +L+D L K GK++ AM +FE + S
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 495
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 128/268 (47%), Gaps = 3/268 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I C+ + A+ +L + K + PN + +L + I + ++ + V+
Sbjct: 123 INCFCRRSQLPLALAVLGKMM-KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
++ + + + ++ + I+ +V ++ ++ K + A
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ + ++ K +P ++ YN ++D L + ++D LN F M+ G+ P+ ++Y++L++ L
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
R +M E I PD+ T++ALID+F + G + E+ +L+++M ++ I PSI
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
Y SLI+ ++D A +FE M S
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVS 389
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 92/180 (51%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
E++ + P + + +I F + Q+ AL + + L +P+++T + +L+
Sbjct: 105 EQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHS 164
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
R+++ + M G P+ +++NTL++ L + + M G +PDL+TY
Sbjct: 165 KRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTY 224
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+++ + G+ + + L N M+Q ++ P + +Y ++ID L K +D A+ +F+EM +
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 57/117 (48%)
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
+++D + F M ++ P I ++ LL+ + K+ + D+ + +M GI + TY+
Sbjct: 61 KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 120
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
LI+ F R + +L + M + P+I SL++ ++ A+ + ++M
Sbjct: 121 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQM 177
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 130/272 (47%), Gaps = 4/272 (1%)
Query: 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKD 58
MCN CK G V AA L+ + K I PN YN +++A ++DL+ I +
Sbjct: 451 MCNKIFLLFCKQGKVDAATSFLKMMEQKGI-EPNVVFYNNMMLAHCRMKNMDLARSIFSE 509
Query: 59 LLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
+L ++ Y+ F D I ++ + ++ N II K Q
Sbjct: 510 MLEKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQ 569
Query: 119 IEKALLIFDH-IKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
KA + + IK + +YN ++D +VG + + + M E G P+ +++
Sbjct: 570 TSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFT 629
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
+L+N K R+DL L EM +K DL Y ALID F + +++ + LF+++ +
Sbjct: 630 SLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPEL 689
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ P++ VY SLI + +GK+D A+ ++++M
Sbjct: 690 GLMPNVSVYNSLISGFRNLGKMDAAIDLYKKM 721
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 114/235 (48%), Gaps = 1/235 (0%)
Query: 36 YNCVLVASAETNDIDLSFQILKDLLVSSR-TLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94
YN ++ + + ++L++L+ R ++S Y + F+ D + E+
Sbjct: 557 YNTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREM 616
Query: 95 VQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRV 154
+ +++ +I F KS +++ AL + +K ++ K DL Y ++D + +
Sbjct: 617 SENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDM 676
Query: 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTAL 214
F+ + E G++P+ YN+L++ R + ++D + +++M GI DL TYT +
Sbjct: 677 KTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTM 736
Query: 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
ID + GNI + L++++ I P ++ L++ L K G+ A + EEM
Sbjct: 737 IDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEM 791
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/269 (20%), Positives = 128/269 (47%), Gaps = 2/269 (0%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSL-RDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLL 60
N I LCK G S A +LQ+L ++K + +YN ++ + D D + + +++
Sbjct: 558 NTIINGLCKVGQTSKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMS 617
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ ++ + +T+ F ++ L E+ + + +I F K ++
Sbjct: 618 ENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMK 677
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
A +F + L P++ YN ++ +G+++ ++ + M G+ D +Y T++
Sbjct: 678 TAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMI 737
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ L K ++L + E+ + GI PD + + L++ + G ++ ++ +MK++ +
Sbjct: 738 DGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVT 797
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
P++ +Y ++I + G ++ A + +EM
Sbjct: 798 PNVLLYSTVIAGHHREGNLNEAFRLHDEM 826
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/235 (19%), Positives = 111/235 (47%), Gaps = 2/235 (0%)
Query: 36 YNCVLVASAETNDIDLSFQILKDLLVS-SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94
++ + A+ +T D+ ++ +L+++ S + YT+ AF+ + + + ++E+
Sbjct: 277 FSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEM 336
Query: 95 VQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRV 154
V P S+I ++ + K ++ KAL +F+ ++ PD + ++++++ + +
Sbjct: 337 VGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEM 396
Query: 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTAL 214
+ + MK + P + +T++ K + L F + ES I +
Sbjct: 397 EKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIF 456
Query: 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ F + G ++ + M+Q+ I P++ Y +++ +M +DLA +IF EM
Sbjct: 457 L-LFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEM 510
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/301 (16%), Positives = 132/301 (43%), Gaps = 38/301 (12%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVS 62
++ CK ++ A+ LL+ +R K + +P Y V+VA + +++ + +++ +++
Sbjct: 281 VQAACKTPDLVMALDLLREMRGK-LGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMVGF 339
Query: 63 SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA 122
+S T+ + ++ + L + + ++ + ++ F K+ ++EKA
Sbjct: 340 GIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEKA 399
Query: 123 LLIFDHIKGLKCKPDLITYNIVLD----------------------------------IL 148
+ + +K ++ P + + ++ +
Sbjct: 400 IEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFLLF 459
Query: 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
+ G+V+ + M++ G+ P+ + YN ++ +++ +DL F EM E G++P+
Sbjct: 460 CKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNN 519
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268
TY+ LID F + + + + + N M + +Y ++I+ L K+G+ A + +
Sbjct: 520 FTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQN 579
Query: 269 M 269
+
Sbjct: 580 L 580
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 90/187 (48%), Gaps = 9/187 (4%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
F++ + Q +++ N ++ A + + ++ A IF + +P+ TY+I++D
Sbjct: 471 FLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGFF 530
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP--- 206
+ + + M + + + YNT++N L K+ + +EM ++ IK
Sbjct: 531 KNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKA----KEMLQNLIKEKRY 586
Query: 207 --DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
+Y ++ID F + G+ + ++ + +M + P++ + SLI+ K ++DLA+
Sbjct: 587 SMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALE 646
Query: 265 IFEEMNS 271
+ EM S
Sbjct: 647 MTHEMKS 653
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 1/165 (0%)
Query: 106 VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165
VN ++ + +S I++A I++ + + D +T +++ R + + + F +
Sbjct: 207 VNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVM 266
Query: 166 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREM-GESGIKPDLLTYTALIDSFGRTGNI 224
G PD + ++ + K L + L REM G+ G+ TYT++I +F + GN+
Sbjct: 267 SRGAEPDGLLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNM 326
Query: 225 EESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
EE++R+ ++M I S+ SL++ K ++ A+ +F M
Sbjct: 327 EEAVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRM 371
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 26/223 (11%)
Query: 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126
+ + Y + D+ T L+ + + E++ + R++ SR E L+F
Sbjct: 223 AKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVM-----SRGAEPDGLLF 277
Query: 127 DHIKGLKCK-PDLI--------------------TYNIVLDILGRVGRVNDMLNEFASMK 165
CK PDL+ TY V+ + G + + + M
Sbjct: 278 SLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEMV 337
Query: 166 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIE 225
G+ I+ +L+N K L L F M E G+ PD + ++ +++ F + +E
Sbjct: 338 GFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEME 397
Query: 226 ESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268
+++ + MK +I PS + ++I K + A+ IF +
Sbjct: 398 KAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFND 440
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166
N ++ A+ ++++++ A+ F + K P + N VL L R +++ + M
Sbjct: 173 NYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVL 232
Query: 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226
GV D ++ L+ + R+ + + FR + G +PD L ++ + + +T ++
Sbjct: 233 IGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLVM 292
Query: 227 SLRLFNDMKQQQIRP-SIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+L L +M+ + P S Y S+I K G ++ A+ + +EM
Sbjct: 293 ALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMDEM 336
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 96/252 (38%), Gaps = 42/252 (16%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ K G+ +AV + + + N PN + ++ ++N +DL+ ++ ++
Sbjct: 594 NSIIDGFVKVGDTDSAVETYREMSE-NGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMK 652
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
L Y F +D E+ ++ ++ V N +I F +++
Sbjct: 653 SMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMD 712
Query: 121 KALLIFDHI--KGLKCKPDLITYNIVLDILGRVGRVN---DMLNEF-------------- 161
A+ ++ + G+ C DL TY ++D L + G +N D+ +E
Sbjct: 713 AAIDLYKKMVNDGISC--DLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMV 770
Query: 162 ------------------ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG 203
MK+ V P+ + Y+T++ + L+ EM E G
Sbjct: 771 LVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNLNEAFRLHDEMLEKG 830
Query: 204 IKPDLLTYTALI 215
I D + L+
Sbjct: 831 IVHDDTVFNLLV 842
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 133/268 (49%), Gaps = 1/268 (0%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVAS-AETNDIDLSFQILKDLLV 61
N I+ LCK V AV + + L K++ C LV + + ++ +++ ++L
Sbjct: 266 NVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLC 325
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
+ S ++ + L ++ VV ++ V N +I + K R+ +
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHE 385
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
A L+FD + + +P+ +TY+I++D+ R G+++ L+ M + G+ YN+L+N
Sbjct: 386 AELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN 445
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
K + + EM ++P ++TYT+L+ + G I ++LRL+++M + I P
Sbjct: 446 GHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
SIY + +L+ L + G + A+ +F EM
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEM 533
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 114/276 (41%), Gaps = 3/276 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ LCK A L + K PN Y+ ++ +D + L +++
Sbjct: 371 NALIDSLCKGRKFHEAELLFDRM-GKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMV 429
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ LS Y + D + F+ E++ +++ ++ + +I
Sbjct: 430 DTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKIN 489
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
KAL ++ + G P + T+ +L L R G + D + F M E V P+ ++YN ++
Sbjct: 490 KALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMI 549
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ + + +EM E GI PD +Y LI TG E+ + + +
Sbjct: 550 EGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCE 609
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
+ Y L+ + GK++ A+++ +EM DL
Sbjct: 610 LNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDL 645
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 118/275 (42%), Gaps = 7/275 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRD----KNIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61
+E L K G + A+ L++ + D N+F+ NA L + ++ +L F + + +
Sbjct: 339 VEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGL 398
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
++ Y+ F L F+ E+V S+ N +I K I
Sbjct: 399 RPNDVT---YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISA 455
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
A + K +P ++TY ++ G++N L + M G+ P ++ TLL+
Sbjct: 456 AEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLS 515
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
L + + + F EM E +KP+ +TY +I+ + G++ ++ +M ++ I P
Sbjct: 516 GLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVP 575
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
Y YR LI L G+ A + ++ +L
Sbjct: 576 DTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCEL 610
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 112/266 (42%), Gaps = 1/266 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I+ C+ G + A+ L + D + L YN ++ + DI + + +++
Sbjct: 409 IDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKL 468
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+ YT+ + + L E+ SI ++ ++ I A+
Sbjct: 469 EPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVK 528
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+F+ + KP+ +TYN++++ G ++ M E G+VPD SY L++ L
Sbjct: 529 LFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLC 588
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
+ ++ + + + + + YT L+ F R G +EE+L + +M Q+ + +
Sbjct: 589 LTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLV 648
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEEMN 270
Y LID K L + +EM+
Sbjct: 649 CYGVLIDGSLKHKDRKLFFGLLKEMH 674
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 122/272 (44%), Gaps = 9/272 (3%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLV 61
G + C+ G + A+ + Q + + + L Y ++ S + D L F +LK++
Sbjct: 616 TGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM-- 673
Query: 62 SSRTLSSD--CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
R L D YT+ A T D + + ++ + + +I K+ +
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFV 733
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLN--EFASMKEAGVVPDFISYN 177
+A ++ ++ + P+ +TY LDIL + G V DM E + G++ + +YN
Sbjct: 734 NEAEVLCSKMQPVSSVPNQVTYGCFLDILTK-GEV-DMQKAVELHNAILKGLLANTATYN 791
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
L+ + R++ M G+ PD +TYT +I+ R ++++++ L+N M ++
Sbjct: 792 MLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEK 851
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
IRP Y +LI G++ A + EM
Sbjct: 852 GIRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 116/263 (44%), Gaps = 3/263 (1%)
Query: 10 CKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASA--ETNDIDLSFQILKDLLVSSRTLS 67
C G ++ A+RL + K I P+ Y + S I + ++ ++ + +
Sbjct: 483 CSKGKINKALRLYHEMTGKGI-APSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541
Query: 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFD 127
Y + D ++ F++E+ + +I + Q +A + D
Sbjct: 542 RVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601
Query: 128 HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187
+ C+ + I Y +L R G++ + L+ M + GV D + Y L++ K +
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHK 661
Query: 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247
L +EM + G+KPD + YT++ID+ +TG+ +E+ +++ M + P+ Y
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721
Query: 248 SLIDNLKKMGKVDLAMTIFEEMN 270
++I+ L K G V+ A + +M
Sbjct: 722 AVINGLCKAGFVNEAEVLCSKMQ 744
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 88/178 (49%)
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
++V + + + +I + + + + +A + H++ C +++ YN+++D L +
Sbjct: 217 DMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQ 276
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
+V + + + + PD ++Y TL+ L K++ ++ L EM P +
Sbjct: 277 KVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVS 336
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
+L++ + G IEE+L L + + P+++VY +LID+L K K A +F+ M
Sbjct: 337 SLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMG 394
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 87/179 (48%)
Query: 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD 146
+L+F + +++ + ++ ++ K R A+ +F+ + + +PD+ Y V+
Sbjct: 176 VLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIR 235
Query: 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206
L + ++ A M+ G + + YN L++ L K +++ + +++ +KP
Sbjct: 236 SLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKP 295
Query: 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTI 265
D++TY L+ + E L + ++M + PS SL++ L+K GK++ A+ +
Sbjct: 296 DVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNL 354
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 1/125 (0%)
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR-LDLCLIYFREMGESGIKPDLLTY 211
+ +D+ N S E + S++ L+ + + RR LD L++ + + + P++ T
Sbjct: 136 KPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTL 195
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+AL+ + + ++ LFNDM IRP +Y+Y +I +L ++ + A + M +
Sbjct: 196 SALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEA 255
Query: 272 SLSDL 276
+ D+
Sbjct: 256 TGCDV 260
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 132/266 (49%), Gaps = 3/266 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ LC NV+ A+ L + +K I PN YN ++ + ++L D++
Sbjct: 260 NTIIDALCNYKNVNDALNLFTEMDNKGI-RPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 318
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ ++ AF+ + +E+++ + I + +I F +++
Sbjct: 319 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 378
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A +F+ + C P+++TYN ++ + RV++ + F M + G+V + ++Y TL+
Sbjct: 379 EAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ + R D I F++M G+ PD++TY+ L+D G +E +L +F +++ ++
Sbjct: 439 HGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKME 498
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIF 266
P IY Y +I+ + K GKV+ +F
Sbjct: 499 PDIYTYNIMIEGMCKAGKVEDGWDLF 524
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 98/180 (54%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
+ ++V++ N +I + + +A+ + D + C+PDL+TY IV++ L
Sbjct: 173 LVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLC 232
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ G ++ L+ M++ + P + YNT+++ L + ++ L F EM GI+P+++
Sbjct: 233 KRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVV 292
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TY +LI G ++ RL +DM +++I P++ + +LID K GK+ A +++EM
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 352
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 96/178 (53%), Gaps = 1/178 (0%)
Query: 94 VVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153
VV+ P+ ++ ++ K I+ AL + ++ K +P ++ YN ++D L
Sbjct: 213 VVKGCQPD-LVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKN 271
Query: 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTA 213
VND LN F M G+ P+ ++YN+L+ L R +M E I P+++T++A
Sbjct: 272 VNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331
Query: 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
LID+F + G + E+ +L+++M ++ I P I+ Y SLI+ ++D A +FE M S
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 389
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 133/277 (48%), Gaps = 19/277 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDL---- 59
+ LCK G++ A+ LL+ + I P YN ++ A +++ + + ++
Sbjct: 228 VNGLCKRGDIDLALSLLKKMEQGKI-EPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
Query: 60 ----LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115
+V+ +L C N+ R D ++LL ++++ +++ + +I AF K
Sbjct: 287 IRPNVVTYNSLIR-CLCNYGRW----SDASRLL---SDMIERKINPNVVTFSALIDAFVK 338
Query: 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS 175
++ +A ++D + PD+ TY+ +++ R+++ + F M P+ ++
Sbjct: 339 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 398
Query: 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235
YNTL+ K +R+D + FREM + G+ + +TYT LI F + + + +F M
Sbjct: 399 YNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMV 458
Query: 236 QQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ P I Y L+D L GKV+ A+ +FE + S
Sbjct: 459 SDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRS 495
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 110/233 (47%), Gaps = 3/233 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I C + A + + + K+ F PN YN ++ + +D ++ +++
Sbjct: 368 INGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRG 426
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
++ YT F +C I +++V I+ + ++ + ++E AL
Sbjct: 427 LVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETAL 486
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
++F++++ K +PD+ TYNI+++ + + G+V D + F S+ GV P+ ++Y T+++
Sbjct: 487 VVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGF 546
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
+ + FREM E G PD TY LI + R G+ S L +M+
Sbjct: 547 CRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 94/180 (52%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
E++ + ++ + +I F + Q+ AL + + L +PD++T N +L+
Sbjct: 105 EQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHG 164
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
R++D ++ M E G PD ++NTL++ L + R + M G +PDL+TY
Sbjct: 165 NRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTY 224
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+++ + G+I+ +L L M+Q +I P + +Y ++ID L V+ A+ +F EM++
Sbjct: 225 GIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDN 284
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 100/212 (47%), Gaps = 6/212 (2%)
Query: 66 LSSDCYTNFA------RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
+S DC+ N + F + + E+ Q + + +I F ++R+
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAREC 447
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
+ A ++F + PD++TY+I+LD L G+V L F ++ + + PD +YN +
Sbjct: 448 DNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIM 507
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+ + K +++ F + G+KP+++TYT ++ F R G EE+ LF +MK++
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGP 567
Query: 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
P Y +LI + G + + EM S
Sbjct: 568 LPDSGTYNTLIRAHLRDGDKAASAELIREMRS 599
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 87/168 (51%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SI+ ++++ A AK + + + + + ++ L +L TY+I+++ R +++ L
Sbjct: 80 SIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVL 139
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
A M + G PD ++ N+LLN R+ + +M E G +PD T+ LI R
Sbjct: 140 AKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRH 199
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
E++ L + M + +P + Y +++ L K G +DLA+++ ++M
Sbjct: 200 NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM 247
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/152 (18%), Positives = 77/152 (50%)
Query: 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
+++ A+ +F + + P ++ ++ +L + ++ + + +++ M+ G+ + +Y+
Sbjct: 61 KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
L+N + +L L L +M + G +PD++T +L++ F I +++ L M +
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+P + + +LI L + + A+ + + M
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+++++ LF DM + + PSI + L+ + KM K DL +++ E+M +
Sbjct: 62 LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQN 109
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 118/233 (50%)
Query: 39 VLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIA 98
+L+A A+ N + + + L + + +T F + L + +++++
Sbjct: 85 LLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLG 144
Query: 99 SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDML 158
SI+ ++ F + +A+ + D I GL +P+++ YN ++D L G+VN L
Sbjct: 145 FEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTAL 204
Query: 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF 218
+ MK+ G+ PD ++YN+L+ L + +M GI PD++T++ALID +
Sbjct: 205 DVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVY 264
Query: 219 GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
G+ G + E+ + +N+M Q+ + P+I Y SLI+ L G +D A + + S
Sbjct: 265 GKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVS 317
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 82/168 (48%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SI+ +R++ A AK + E + +F H++ L DL ++ ++D R R++ L+
Sbjct: 78 SIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCL 137
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
M + G P +++ +L+N + R + ++ G +P+++ Y +IDS
Sbjct: 138 GKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEK 197
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
G + +L + MK+ IRP + Y SLI L G ++ I +M
Sbjct: 198 GQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDM 245
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 98/200 (49%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+ + F + + + ++++V + ++++ N II + + Q+ AL + H+K
Sbjct: 152 FGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMK 211
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
+ +PD++TYN ++ L G + M G+ PD I+++ L++ K +L
Sbjct: 212 KMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLL 271
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+ EM + + P+++TY +LI+ G ++E+ ++ N + + P+ Y +LI
Sbjct: 272 EAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLI 331
Query: 251 DNLKKMGKVDLAMTIFEEMN 270
+ K +VD M I M+
Sbjct: 332 NGYCKAKRVDDGMKILCVMS 351
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 38/272 (13%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ LC+ G V+ A+ +L+ ++ I P+ YN ++ + +S +IL D++
Sbjct: 188 NTIIDSLCEKGQVNTALDVLKHMKKMGI-RPDVVTYNSLITRLFHSGTWGVSARILSDMM 246
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
R I SP+ +I + +I + K Q+
Sbjct: 247 ---------------RMGI-------------------SPD-VITFSALIDVYGKEGQLL 271
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A ++ + P+++TYN +++ L G +++ + G P+ ++YNTL+
Sbjct: 272 EAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLI 331
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
N K +R+D + M G+ D TY L + + G + ++ M +
Sbjct: 332 NGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVH 391
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
P +Y + L+D L GK+ A+ E++ S
Sbjct: 392 PDMYTFNILLDGLCDHGKIGKALVRLEDLQKS 423
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 73/134 (54%)
Query: 136 PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIY 195
P ++ ++ +L + ++ + +++ F ++ G+ D S+ TL++ + RL L L
Sbjct: 77 PSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSC 136
Query: 196 FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255
+M + G +P ++T+ +L++ F E++ L + + P++ +Y ++ID+L +
Sbjct: 137 LGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 196
Query: 256 MGKVDLAMTIFEEM 269
G+V+ A+ + + M
Sbjct: 197 KGQVNTALDVLKHM 210
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 38/237 (16%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLL 60
N I LC G + A ++L L K F PNA YN ++ + +D +IL +
Sbjct: 293 NSLINGLCIHGLLDEAKKVLNVLVSKG-FFPNAVTYNTLINGYCKAKRVDDGMKIL--CV 349
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+S + D +T N + + ++ +
Sbjct: 350 MSRDGVDGDTFT---------------------------------YNTLYQGYCQAGKFS 376
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
A + + PD+ T+NI+LD L G++ L ++++ V I+YN ++
Sbjct: 377 AAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIII 436
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
L K +++ F + G+ PD++TY ++ R E+ L+ M+++
Sbjct: 437 KGLCKADKVEDAWYLFCSLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKE 493
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 68/152 (44%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
+ N +I + K+++++ + I + D TYN + + G+ +
Sbjct: 325 VTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGR 384
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
M GV PD ++N LL+ L ++ L+ ++ +S ++TY +I +
Sbjct: 385 MVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADK 444
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255
+E++ LF + + + P + Y +++ L++
Sbjct: 445 VEDAWYLFCSLALKGVSPDVITYITMMIGLRR 476
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 114/226 (50%), Gaps = 5/226 (2%)
Query: 48 DIDLSFQILKDLLVSSRTLSSDC--YTNFARAFIMTDDCTQLLIFIEEVVQ-IASPESII 104
+I++ Q K R DC Y R ++ I+EVV+ S
Sbjct: 105 EINVKIQFFK-WAGKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPA 163
Query: 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164
V++ ++ A +++ + KAL +F KG KCKP TYN V+ +L + G+ + + M
Sbjct: 164 VLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223
Query: 165 -KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
E PD I+Y+ L+++ K+ R D + F EM ++ ++P YT L+ + + G
Sbjct: 224 CNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGK 283
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+E++L LF +MK+ P++Y Y LI L K G+VD A +++M
Sbjct: 284 VEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDM 329
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 112/262 (42%), Gaps = 4/262 (1%)
Query: 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNC--VLVASAETNDIDLSFQILKDLLVSSRTLSS 68
K G V A+ L + ++ P Y ++ + +D ++ KD+L T
Sbjct: 280 KVGKVEKALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDV 338
Query: 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR-QIEKALLIFD 127
N +L E+ +++ N +I A +S+ + + FD
Sbjct: 339 VFLNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFD 398
Query: 128 HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187
+K P TY+I++D + RV L M E G P +Y +L+N L K +
Sbjct: 399 KMKADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAK 458
Query: 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247
R + F+E+ E+ Y +I FG+ G + E++ LFN+MK Q P +Y Y
Sbjct: 459 RYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYN 518
Query: 248 SLIDNLKKMGKVDLAMTIFEEM 269
+L+ + K G ++ A ++ +M
Sbjct: 519 ALMSGMVKAGMINEANSLLRKM 540
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 90/180 (50%), Gaps = 4/180 (2%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
I + +I ++ K + + A+ +FD +K +P Y +L I +VG+V L+ F
Sbjct: 234 ITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEE 293
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
MK AG P +Y L+ L K R+D ++++M G+ PD++ L++ G+ G
Sbjct: 294 MKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGR 353
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNL-KKMGKVDLAMTIFEEMNSSLSDLAGPKDF 282
+EE +F++M + P++ Y ++I L + V + F++M +D P +F
Sbjct: 354 VEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMK---ADSVSPSEF 410
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 7/239 (2%)
Query: 35 AYNCVLVA----SAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIF 90
+YN V+ A A +++ F +K VS + Y+ + T+ + L+
Sbjct: 375 SYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFT---YSILIDGYCKTNRVEKALLL 431
Query: 91 IEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150
+EE+ + P +I A K+++ E A +F +K Y +++ G+
Sbjct: 432 LEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGK 491
Query: 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210
G++++ ++ F MK G PD +YN L++ + K ++ R+M E+G + D+ +
Sbjct: 492 CGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINS 551
Query: 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ +++ F RTG ++ +F +K I+P Y +L+ G + A + EM
Sbjct: 552 HNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREM 610
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 1/227 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIF-LPNAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I+ CK V A+ LL+ + +K P AY ++ A + + + ++ K+L +
Sbjct: 416 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFG 475
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+SS Y + F ++ + E+ S + N ++ K+ I +A
Sbjct: 476 NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANS 535
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+ ++ C+ D+ ++NI+L+ R G + F ++K +G+ PD ++YNTLL
Sbjct: 536 LLRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFA 595
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLF 231
+ REM + G + D +TY++++D+ G + ++ + F
Sbjct: 596 HAGMFEEAARMMREMKDKGFEYDAITYSSILDAVGNVDHEKDDVSSF 642
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 132/263 (50%), Gaps = 3/263 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ LC NV+ A+ L + +K I PN YN ++ + ++L D++
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGI-RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ ++ AF+ + +E+++ + I + +I F ++++A
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F+ + C P+++TYN ++ + RV + + F M + G+V + ++YNTL+ L
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ D+ F++M G+ PD++TY+ L+D + G +E++L +F +++ ++ P I
Sbjct: 441 FQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDI 500
Query: 244 YVYRSLIDNLKKMGKVDLAMTIF 266
Y Y +I+ + K GKV+ +F
Sbjct: 501 YTYNIMIEGMCKAGKVEDGWDLF 523
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 133/271 (49%), Gaps = 7/271 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I LC G S A RLL + ++ I PN ++ ++ A + + + ++ +++
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKIN-PNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352
Query: 61 VSSRTLSSD--CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
R++ D Y++ F M D + E ++ +++ N +I F K+++
Sbjct: 353 --KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 410
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
+E+ + +F + + +TYN ++ L + G + F M GV PD I+Y+
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
LL+ L K +L+ L+ F + +S ++PD+ TY +I+ + G +E+ LF + +
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 530
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
++P++ +Y ++I + G + A +F EM
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREM 561
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 99/201 (49%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+ + + ++ + I+ +V + ++ K I+ AL + ++
Sbjct: 188 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 247
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K + D++ Y ++D L VND LN F M G+ P+ ++YN+L+ L R
Sbjct: 248 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWS 307
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+M E I P+++T++ALID+F + G + E+ +L+++M ++ I P I+ Y SLI
Sbjct: 308 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 367
Query: 251 DNLKKMGKVDLAMTIFEEMNS 271
+ ++D A +FE M S
Sbjct: 368 NGFCMHDRLDEAKHMFELMIS 388
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 133/276 (48%), Gaps = 17/276 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDL----- 59
+ LCK G++ A+ LL+ + I Y ++ A +++ + + ++
Sbjct: 227 VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286
Query: 60 ---LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
+V+ +L C N+ R D ++LL ++++ +++ + +I AF K
Sbjct: 287 RPNVVTYNSLIR-CLCNYGR----WSDASRLL---SDMIERKINPNVVTFSALIDAFVKE 338
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
++ +A ++D + PD+ TY+ +++ R+++ + F M P+ ++Y
Sbjct: 339 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
NTL+ K +R++ + FREM + G+ + +TY LI + G+ + + ++F M
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 458
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ P I Y L+D L K GK++ A+ +FE + S
Sbjct: 459 DGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKS 494
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 98/185 (52%)
Query: 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144
++ + ++++ + + + N +I + +A+ + D + C+PDL TY V
Sbjct: 167 SEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTV 226
Query: 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI 204
++ L + G ++ L+ M++ + D + Y T+++ L + ++ L F EM GI
Sbjct: 227 VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286
Query: 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
+P+++TY +LI G ++ RL +DM +++I P++ + +LID K GK+ A
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346
Query: 265 IFEEM 269
+++EM
Sbjct: 347 LYDEM 351
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 91/177 (51%)
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
E+VQ SI+ N+++ A AK + + + + + ++ L+ DL +YNI+++ R
Sbjct: 70 EMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRS 129
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
++ L M + G PD ++ ++LLN +R+ + +M +P+ +T+
Sbjct: 130 QLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFN 189
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
LI E++ L + M + +P ++ Y ++++ L K G +DLA+++ ++M
Sbjct: 190 TLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 246
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 83/165 (50%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166
N +I F + Q+ AL + + L +PD++T + +L+ R+++ + M
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV 178
Query: 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226
P+ +++NTL++ L + + M G +PDL TY +++ + G+I+
Sbjct: 179 MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238
Query: 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+L L M++ +I + +Y ++ID L V+ A+ +F EM++
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN 283
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 77/152 (50%)
Query: 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
+++ A+ +F + + P ++ +N +L + ++ + + +++ M+ + D SYN
Sbjct: 60 KLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYN 119
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
L+N + +L L L +M + G +PD++T ++L++ + I E++ L + M
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVM 179
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ +P+ + +LI L K A+ + + M
Sbjct: 180 EYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 211
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 104 bits (259), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 3/266 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ LCK V+ A + + K I PN Y ++ ++ + ++L D++
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
T + Y+ AF+ + EE+V+++ I+ + +I +I+
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A +FD + C D+++YN +++ + RV D + F M + G+V + ++YNTL+
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ +D +F +M GI PD+ TY L+ G +E++L +F DM+++++
Sbjct: 373 QGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMD 432
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIF 266
I Y ++I + K GKV+ A ++F
Sbjct: 433 LDIVTYTTVIRGMCKTGKVEEAWSLF 458
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 137/273 (50%), Gaps = 3/273 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
+ C+ VS AV L+ + + + P+ AYN ++ + +T ++ +F K++
Sbjct: 162 VNGFCRRNRVSDAVSLVDKMVEIG-YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKG 220
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ YT + + + ++++ ++I + ++ AF K+ ++ +A
Sbjct: 221 IRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAK 280
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F+ + + PD++TY+ +++ L R+++ F M G + D +SYNTL+N
Sbjct: 281 ELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGF 340
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K +R++ + FREM + G+ + +TY LI F + G+++++ F+ M I P I
Sbjct: 341 CKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDI 400
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
+ Y L+ L G+++ A+ IFE+M DL
Sbjct: 401 WTYNILLGGLCDNGELEKALVIFEDMQKREMDL 433
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 94/163 (57%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166
N +I F Q+ AL I + L +PD +T +++ R RV+D ++ M E
Sbjct: 124 NIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVE 183
Query: 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226
G PD ++YN ++++L K +R++ +F+E+ GI+P+++TYTAL++ + +
Sbjct: 184 IGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSD 243
Query: 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ RL +DM +++I P++ Y +L+D K GKV A +FEEM
Sbjct: 244 AARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEM 286
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 91/168 (54%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
+ + ++ F + ++ A+ + D + + KPD++ YN ++D L + RVND + F
Sbjct: 156 VTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKE 215
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
++ G+ P+ ++Y L+N L R +M + I P+++TY+AL+D+F + G
Sbjct: 216 IERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+ E+ LF +M + I P I Y SLI+ L ++D A +F+ M S
Sbjct: 276 VLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVS 323
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/266 (22%), Positives = 121/266 (45%), Gaps = 3/266 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
+ LC + S A RLL + K I PN Y+ +L A + + + ++ ++++ S
Sbjct: 232 VNGLCNSSRWSDAARLLSDMIKKKI-TPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
Y++ + D + + +V ++ N +I F K++++E +
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F + + +TYN ++ + G V+ F+ M G+ PD +YN LL L
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
L+ L+ F +M + + D++TYT +I +TG +EE+ LF + + ++P I
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDI 470
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEM 269
Y +++ L G + ++ +M
Sbjct: 471 VTYTTMMSGLCTKGLLHEVEALYTKM 496
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 89/168 (52%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SI+ NR++ A K ++ + + + ++ L + DL T+NIV++ +V+ L+
Sbjct: 84 SIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSIL 143
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
M + G PD ++ +L+N + R+ + +M E G KPD++ Y A+IDS +T
Sbjct: 144 GKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKT 203
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ ++ F +++++ IRP++ Y +L++ L + A + +M
Sbjct: 204 KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM 251
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 1/183 (0%)
Query: 58 DLLVSSRTLSSDC-YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
DL+VS L+ Y F + E+ Q + + N +I F ++
Sbjct: 319 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
++KA F + PD+ TYNI+L L G + L F M++ + D ++Y
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTY 438
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
T++ + K +++ F + G+KPD++TYT ++ G + E L+ MKQ
Sbjct: 439 TTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQ 498
Query: 237 QQI 239
+ +
Sbjct: 499 EGL 501
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 72/134 (53%)
Query: 136 PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIY 195
P ++ +N +L + ++ + + +++ M+ G+ D ++N ++N ++ L L
Sbjct: 83 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142
Query: 196 FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255
+M + G +PD +T +L++ F R + +++ L + M + +P I Y ++ID+L K
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202
Query: 256 MGKVDLAMTIFEEM 269
+V+ A F+E+
Sbjct: 203 TKRVNDAFDFFKEI 216
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLV 61
N I CKA V ++L + + + + YN ++ + D+D + + +
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
+ Y + + L+ E++ + I+ +I K+ ++E+
Sbjct: 394 FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEE 453
Query: 122 ALLIFDHI--KGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD 172
A +F + KGLK PD++TY ++ L G ++++ + MK+ G++ +
Sbjct: 454 AWSLFCSLSLKGLK--PDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKN 504
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 36/200 (18%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG----RVNDMLNE---- 160
+I AFA S + +A+ +F ++ CKP LITYN++L++ G++G ++ ++ +
Sbjct: 214 LISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSD 273
Query: 161 ----------------------------FASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192
F MK AG D ++YN LL+ K R
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333
Query: 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDN 252
+ EM +G P ++TY +LI ++ R G ++E++ L N M ++ +P ++ Y +L+
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393
Query: 253 LKKMGKVDLAMTIFEEMNSS 272
++ GKV+ AM+IFEEM ++
Sbjct: 394 FERAGKVESAMSIFEEMRNA 413
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 2/247 (0%)
Query: 29 NIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQ 86
N F P+ YN ++ A A +D + ++ + YT F
Sbjct: 343 NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVES 402
Query: 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD 146
+ EE+ +I N I + + + + IFD I PD++T+N +L
Sbjct: 403 AMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLA 462
Query: 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206
+ G+ G +++ F MK AG VP+ ++NTL++ + + + +R M ++G+ P
Sbjct: 463 VFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTP 522
Query: 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
DL TY ++ + R G E+S ++ +M+ + +P+ Y SL+ ++ L ++
Sbjct: 523 DLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLA 582
Query: 267 EEMNSSL 273
EE+ S +
Sbjct: 583 EEVYSGV 589
Score = 95.5 bits (236), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 116/267 (43%), Gaps = 2/267 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I L K G VS+A + L++ L +Y ++ A A + + + K +
Sbjct: 180 ISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGC 239
Query: 65 TLSSDCYTNFARAF-IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ Y F M ++ +E++ N +I + ++A
Sbjct: 240 KPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAA 299
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F+ +K D +TYN +LD+ G+ R + + M G P ++YN+L++
Sbjct: 300 QVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAY 359
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ LD + +M E G KPD+ TYT L+ F R G +E ++ +F +M+ +P+I
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNI 419
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEMN 270
+ + I GK M IF+E+N
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEIN 446
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 125/262 (47%), Gaps = 2/262 (0%)
Query: 10 CKAGNVSA-AVRLLQSLRDKNI-FLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS 67
CK G++ A ++ + ++ + YN +L +++ + ++L +++++ + S
Sbjct: 289 CKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPS 348
Query: 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFD 127
Y + A+ + + ++ + + + ++ F ++ ++E A+ IF+
Sbjct: 349 IVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFE 408
Query: 128 HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187
++ CKP++ T+N + + G G+ +M+ F + G+ PD +++NTLL +
Sbjct: 409 EMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNG 468
Query: 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247
F+EM +G P+ T+ LI ++ R G+ E+++ ++ M + P + Y
Sbjct: 469 MDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYN 528
Query: 248 SLIDNLKKMGKVDLAMTIFEEM 269
+++ L + G + + + EM
Sbjct: 529 TVLAALARGGMWEQSEKVLAEM 550
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 99 SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR---VGRVN 155
SP+ I +N ++ + + + + KA + D++K P + TYN ++ + R G+
Sbjct: 626 SPD-ITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 156 DMLNEFASMKEAGVVPDFISYNTLLNNL-RKIRRLDLCLIYFREMGESGIKPDLLTYTAL 214
++L E + G+ PD ISYNT++ R R D I F EM SGI PD++TY
Sbjct: 685 EILREILA---KGIKPDIISYNTVIYAYCRNTRMRDASRI-FSEMRNSGIVPDVITYNTF 740
Query: 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
I S+ EE++ + M + RP+ Y S++D K+ + D A E++
Sbjct: 741 IGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 143 IVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202
I++ +LG+ GRV+ N F ++E G D SY +L++ R + F++M E
Sbjct: 178 IIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEED 237
Query: 203 GIKPDLLTYTALIDSFGRTGNIEESL-RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDL 261
G KP L+TY +++ FG+ G + L MK I P Y Y +LI K+
Sbjct: 238 GCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 262 AMTIFEEMNSS 272
A +FEEM ++
Sbjct: 298 AAQVFEEMKAA 308
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 67/134 (50%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
S+ N +++ ++S K+ I I KPD+I+YN V+ R R+ D F
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
+ M+ +G+VPD I+YNT + + + + R M + G +P+ TY +++D + +
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782
Query: 222 GNIEESLRLFNDMK 235
+E+ D++
Sbjct: 783 NRKDEAKLFVEDLR 796
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166
N +I A+++ E+A+ ++ + PDL TYN VL L R G A M++
Sbjct: 493 NTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMED 552
Query: 167 AGVVPDFISYNTLLNNLRKIRRLDLCL-----IY-------------------------- 195
P+ ++Y +LL+ + + L +Y
Sbjct: 553 GRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPE 612
Query: 196 ----FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
F E+ E G PD+ T +++ +GR + ++ + + MK++ PS+ Y SL+
Sbjct: 613 AERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLM 671
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 41/204 (20%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITY------------------------- 141
N ++ A A+ E++ + ++ +CKP+ +TY
Sbjct: 528 NTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYS 587
Query: 142 ------NIVLDILGRVGRVNDMLNE----FASMKEAGVVPDFISYNTLLN---NLRKIRR 188
++L L V D+L E F+ +KE G PD + N++++ + + +
Sbjct: 588 GVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAK 647
Query: 189 LDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRS 248
+ L Y M E G P + TY +L+ R+ + +S + ++ + I+P I Y +
Sbjct: 648 ANGVLDY---MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNT 704
Query: 249 LIDNLKKMGKVDLAMTIFEEMNSS 272
+I + ++ A IF EM +S
Sbjct: 705 VIYAYCRNTRMRDASRIFSEMRNS 728
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 51/109 (46%)
Query: 91 IEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150
+ E++ II N +I+A+ ++ ++ A IF ++ PD+ITYN +
Sbjct: 687 LREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAA 746
Query: 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREM 199
+ + M + G P+ +YN++++ K+ R D ++ ++
Sbjct: 747 DSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDL 795
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 104/193 (53%)
Query: 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP 136
F + ++ + ++++V++ + ++ + + +A+ + + + C+P
Sbjct: 144 GFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQP 203
Query: 137 DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYF 196
DL+TY V++ L + G + LN M++ + D + Y+T++++L K R +D L F
Sbjct: 204 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLF 263
Query: 197 REMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKM 256
EM GI+PD+ TY++LI G ++ RL +DM +++I P++ + SLID K
Sbjct: 264 TEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Query: 257 GKVDLAMTIFEEM 269
GK+ A +F+EM
Sbjct: 324 GKLIEAEKLFDEM 336
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 129/263 (49%), Gaps = 3/263 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLS--FQILKDLLVSS 63
I+ LCK +V A+ L + +K I P+ + + S N S ++L D+L
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGI-RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK 305
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ + + AF + +E++Q + +I+ N +I F ++++A
Sbjct: 306 INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQ 365
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
IF + C PD++TYN +++ + +V D + F M G+V + ++Y TL++
Sbjct: 366 QIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGF 425
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ D + F++M G+ P+++TY L+D + G +E+++ +F +++ ++ P I
Sbjct: 426 FQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDI 485
Query: 244 YVYRSLIDNLKKMGKVDLAMTIF 266
Y Y + + + K GKV+ +F
Sbjct: 486 YTYNIMSEGMCKAGKVEDGWDLF 508
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 132/277 (47%), Gaps = 19/277 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILK------- 57
I LCK G A+ LL + I Y+ V+ + + +D + +
Sbjct: 212 INGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271
Query: 58 --DLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115
D+ S +S C N+ R D ++LL ++++ +++ N +I AFAK
Sbjct: 272 RPDVFTYSSLIS--CLCNYGR----WSDASRLL---SDMLERKINPNVVTFNSLIDAFAK 322
Query: 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS 175
++ +A +FD + P+++TYN +++ R+++ F M +PD ++
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVT 382
Query: 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235
YNTL+N K +++ + FR+M G+ + +TYT LI F + + + + +F M
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMV 442
Query: 236 QQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ P+I Y +L+D L K GK++ AM +FE + S
Sbjct: 443 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKS 479
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 122/260 (46%), Gaps = 4/260 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I C + A ++ + K+ LP+ YN ++ + + ++ +D+
Sbjct: 349 NSLINGFCMHDRLDEAQQIFTLMVSKDC-LPDVVTYNTLINGFCKAKKVVDGMELFRDMS 407
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
++ YT F DC + +++V +I+ N ++ K+ ++E
Sbjct: 408 RRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLE 467
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
KA+++F++++ K +PD+ TYNI+ + + + G+V D + F S+ GV PD I+YNT++
Sbjct: 468 KAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMI 527
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ K + F +M E G PD TY LI + R G+ S L +M+ +
Sbjct: 528 SGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFA 587
Query: 241 PSIYVYRSLIDNLKKMGKVD 260
Y L+ ++ G++D
Sbjct: 588 GDASTY-GLVTDMLHDGRLD 606
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 127/268 (47%), Gaps = 3/268 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I LC+ +S A+ +L + K + P+ N +L N I + ++ ++
Sbjct: 107 INCLCRRSQLSFALAILGKMM-KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ +T + ++ + +E +V ++ +I K + + AL
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ + ++ K + D++ Y+ V+D L + V+D LN F M G+ PD +Y++L++ L
Sbjct: 226 NLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
R +M E I P+++T+ +LID+F + G + E+ +LF++M Q+ I P+I
Sbjct: 286 CNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNI 345
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
Y SLI+ ++D A IF M S
Sbjct: 346 VTYNSLINGFCMHDRLDEAQQIFTLMVS 373
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 92/182 (50%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
F E++ + ++ N +I + Q+ AL I + L P ++T N +L+
Sbjct: 87 FGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFC 146
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
R+++ + M E G PD +++ TL++ L + + + M G +PDL+
Sbjct: 147 HGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLV 206
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TY A+I+ + G + +L L N M++ +I + +Y ++ID+L K VD A+ +F EM
Sbjct: 207 TYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEM 266
Query: 270 NS 271
++
Sbjct: 267 DN 268
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 118/272 (43%), Gaps = 5/272 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ K G + A +L + ++I PN YN ++ + +D + QI L+
Sbjct: 314 NSLIDAFAKEGKLIEAEKLFDEMIQRSID-PNIVTYNSLINGFCMHDRLDEAQQIFT-LM 371
Query: 61 VSSRTLSSD-CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
VS L Y F + ++ + + + +I F ++
Sbjct: 372 VSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDC 431
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
+ A ++F + P+++TYN +LD L + G++ + F ++++ + PD +YN +
Sbjct: 432 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIM 491
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+ K +++ F + G+KPD++ Y +I F + G EE+ LF MK+
Sbjct: 492 SEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGP 551
Query: 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
P Y +LI + G + + +EM S
Sbjct: 552 LPDSGTYNTLIRAHLRDGDKAASAELIKEMRS 583
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 90/177 (50%)
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
E+V+ SI+ ++++ A AK ++ + + + ++ L +L TYNI+++ L R
Sbjct: 55 EMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRS 114
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
+++ L M + G P ++ N+LLN R+ + +M E G +PD +T+T
Sbjct: 115 QLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFT 174
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
L+ + E++ L M + +P + Y ++I+ L K G+ DLA+ + +M
Sbjct: 175 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM 231
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 59/117 (50%)
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
++++ ++ F M ++ P + ++ LL+ + K+++ DL + + +M G+ +L TY
Sbjct: 45 KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+I+ R + +L + M + PSI SL++ ++ A+ + ++M
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQM 161
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 135/272 (49%), Gaps = 7/272 (2%)
Query: 9 LCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDLLVSSRTLS 67
+CK+G + A+ LL+ + ++NI L Y+ ++ + +D +F + ++ +
Sbjct: 238 MCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 297
Query: 68 SDCYTNFARAFIMT---DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
Y F DD +LL ++++ +++ + +I +F K ++ +A
Sbjct: 298 IITYNTLIGGFCNAGRWDDGAKLL---RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+ + P+ ITYN ++D + R+ + + M G PD +++N L+N
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
K R+D L FREM G+ + +TY L+ F ++G +E + +LF +M +++RP I
Sbjct: 415 KANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIV 474
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
Y+ L+D L G+++ A+ IF ++ S +L
Sbjct: 475 SYKILLDGLCDNGELEKALEIFGKIEKSKMEL 506
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 132/263 (50%), Gaps = 3/263 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ LCK G++ A L + K F + YN ++ D ++L+D++
Sbjct: 270 IDGLCKDGSLDNAFNLFNEMEIKG-FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK 328
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ + ++ +F+ + ++E++Q + I N +I F K ++E+A+
Sbjct: 329 ISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAI 388
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ D + C PD++T+NI+++ + R++D L F M GV+ + ++YNTL+
Sbjct: 389 QMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGF 448
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ +L++ F+EM ++PD+++Y L+D G +E++L +F +++ ++ I
Sbjct: 449 CQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDI 508
Query: 244 YVYRSLIDNLKKMGKVDLAMTIF 266
+Y +I + KVD A +F
Sbjct: 509 GIYMIIIHGMCNASKVDDAWDLF 531
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 96/188 (51%)
Query: 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147
++ I+ +V+ + + ++ KS Q A+ + ++ K D + Y+I++D
Sbjct: 213 VVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272
Query: 148 LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD 207
L + G +++ N F M+ G D I+YNTL+ R D R+M + I P+
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332
Query: 208 LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFE 267
++T++ LIDSF + G + E+ +L +M Q+ I P+ Y SLID K +++ A+ + +
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392
Query: 268 EMNSSLSD 275
M S D
Sbjct: 393 LMISKGCD 400
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 96/185 (51%)
Query: 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144
++ L ++ +V++ ++I +N ++ + ++ A+++ D + +P+ +TY V
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPV 234
Query: 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI 204
L+++ + G+ + M+E + D + Y+ +++ L K LD F EM G
Sbjct: 235 LNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294
Query: 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
K D++TY LI F G ++ +L DM +++I P++ + LID+ K GK+ A
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQ 354
Query: 265 IFEEM 269
+ +EM
Sbjct: 355 LLKEM 359
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 89/177 (50%)
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
+++++ ++ N ++ ++ +AL + D + + KP LIT N +++ L G
Sbjct: 148 KIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNG 207
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
+V+D + M E G P+ ++Y +LN + K + L + R+M E IK D + Y+
Sbjct: 208 KVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ID + G+++ + LFN+M+ + + I Y +LI G+ D + +M
Sbjct: 268 IIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDM 324
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 116/253 (45%), Gaps = 10/253 (3%)
Query: 20 RLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79
R + D+N+ + + LV + +DL +D+ + SR L + +F R F
Sbjct: 44 RGFSTFSDRNLSYRDKLSSGLVGIKADDAVDL----FRDM-IQSRPLPT--VIDFNRLFS 96
Query: 80 MTDDCTQLLIFIEEVVQIAS---PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP 136
Q + + Q+ S SI ++ +I F + R++ A I L +P
Sbjct: 97 AIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEP 156
Query: 137 DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYF 196
D + +N +L+ L RV++ L M E G P I+ NTL+N L ++ ++
Sbjct: 157 DTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLI 216
Query: 197 REMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKM 256
M E+G +P+ +TY +++ ++G ++ L M+++ I+ Y +ID L K
Sbjct: 217 DRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKD 276
Query: 257 GKVDLAMTIFEEM 269
G +D A +F EM
Sbjct: 277 GSLDNAFNLFNEM 289
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 114/260 (43%), Gaps = 4/260 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ CK + A++++ + K P+ +N ++ + N ID ++ +++
Sbjct: 372 NSLIDGFCKENRLEEAIQMVDLMISKGCD-PDIMTFNILINGYCKANRIDDGLELFREMS 430
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ ++ Y + F + +E+V I+ ++ + ++E
Sbjct: 431 LRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELE 490
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
KAL IF I+ K + D+ Y I++ + +V+D + F S+ GV D +YN ++
Sbjct: 491 KALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMI 550
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ L + L I FR+M E G PD LTY LI + + + L +MK
Sbjct: 551 SELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFP 610
Query: 241 PSIYVYRSLIDNLKKMGKVD 260
+ + +I N+ G++D
Sbjct: 611 ADVSTVKMVI-NMLSSGELD 629
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 129/272 (47%), Gaps = 4/272 (1%)
Query: 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKD 58
+CN + LCK G A LL + + I PN +YN V++ ++DL+ + +
Sbjct: 445 VCNTILSWLCKQGKTDEATELLSKMESRGIG-PNVVSYNNVMLGHCRQKNMDLARIVFSN 503
Query: 59 LLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
+L ++ Y+ D L + + + +V II K Q
Sbjct: 504 ILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQ 563
Query: 119 IEKAL-LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
KA L+ + I+ + ++YN ++D + G ++ + + M G+ P+ I+Y
Sbjct: 564 TSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITYT 623
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
+L+N L K R+D L EM G+K D+ Y ALID F + N+E + LF+++ ++
Sbjct: 624 SLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEE 683
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ PS +Y SLI + +G + A+ ++++M
Sbjct: 684 GLNPSQPIYNSLISGFRNLGNMVAALDLYKKM 715
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 118/266 (44%), Gaps = 2/266 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I LCK G S A LL ++ ++ + +YN ++ + ++D + +++ +
Sbjct: 555 INGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNG 614
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ + YT+ + Q L +E+ I +I F K +E A
Sbjct: 615 ISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESAS 674
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F + P YN ++ +G + L+ + M + G+ D +Y TL++ L
Sbjct: 675 ALFSELLEEGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGL 734
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K L L + EM G+ PD + YT +++ + G + +++F +MK+ + P++
Sbjct: 735 LKDGNLILASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNV 794
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEM 269
+Y ++I + G +D A + +EM
Sbjct: 795 LIYNAVIAGHYREGNLDEAFRLHDEM 820
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 133/275 (48%), Gaps = 3/275 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
++ CK +++ A LL+ +++K + +P+ Y V++AS + ++D + ++ ++L
Sbjct: 275 VQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDG 334
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+++ T+ +D L+ +++ + + + + +I F K+ ++EKAL
Sbjct: 335 ISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKAL 394
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ ++ L P + + ++ + + + L F E G+ F+ NT+L+ L
Sbjct: 395 EFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFVC-NTILSWL 453
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K + D +M GI P++++Y ++ R N++ + +F+++ ++ ++P+
Sbjct: 454 CKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPNN 513
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278
Y Y LID + A+ + M SS ++ G
Sbjct: 514 YTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNG 548
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 7/243 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ K G + +AV + + I PN Y ++ + N +D + ++ ++
Sbjct: 588 NSIIDGFFKEGEMDSAVAAYEEMCGNGIS-PNVITYTSLMNGLCKNNRMDQALEMRDEMK 646
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
L Y F + E+++ S + N +I F +
Sbjct: 647 NKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQPIYNSLISGFRNLGNMV 706
Query: 121 KALLIFDHI--KGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
AL ++ + GL+C DL TY ++D L + G + + M+ G+VPD I Y
Sbjct: 707 AALDLYKKMLKDGLRC--DLGTYTTLIDGLLKDGNLILASELYTEMQAVGLVPDEIIYTV 764
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
++N L K + + F EM ++ + P++L Y A+I R GN++E+ RL ++M +
Sbjct: 765 IVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKG 824
Query: 239 IRP 241
I P
Sbjct: 825 ILP 827
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 95/218 (43%), Gaps = 3/218 (1%)
Query: 9 LCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS 67
LCK + A+ + +++K + L AY ++ + ++++ + + +LL S
Sbjct: 629 LCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPS 688
Query: 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFD 127
Y + F + L +++++ + +I K + A ++
Sbjct: 689 QPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYT 748
Query: 128 HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187
++ + PD I Y ++++ L + G+ ++ F MK+ V P+ + YN ++ +
Sbjct: 749 EMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREG 808
Query: 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIE 225
LD EM + GI PD T+ L+ G+ GN++
Sbjct: 809 NLDEAFRLHDEMLDKGILPDGATFDILVS--GQVGNLQ 844
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 1/165 (0%)
Query: 106 VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165
VNR + A + + +A ++ + + D +T +++ R + + L +
Sbjct: 201 VNRTLSALVQRNSLTEAKELYSRMVAIGVDGDNVTTQLLMRASLREEKPAEALEVLSRAI 260
Query: 166 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI-KPDLLTYTALIDSFGRTGNI 224
E G PD + Y+ + K L + REM E + P TYT++I + + GN+
Sbjct: 261 ERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNM 320
Query: 225 EESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
++++RL ++M I ++ SLI K + A+ +F++M
Sbjct: 321 DDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKM 365
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 68/272 (25%), Positives = 131/272 (48%), Gaps = 20/272 (7%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDLLVSSR 64
I LCK G A+ LL + I YN ++ + +D +F + + ++
Sbjct: 222 INGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKM--ETK 279
Query: 65 TLSSD---------CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115
+ D C N+ R D ++LL ++++ ++ N +I AF K
Sbjct: 280 GIKPDVFTYNPLISCLCNYGR----WSDASRLL---SDMLEKNINPDLVFFNALIDAFVK 332
Query: 116 SRQIEKALLIFDH-IKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI 174
++ +A ++D +K C PD++ YN ++ + RV + + F M + G+V + +
Sbjct: 333 EGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTV 392
Query: 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234
+Y TL++ + R D + F++M G+ PD++TY L+D GN+E +L +F M
Sbjct: 393 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYM 452
Query: 235 KQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
+++ ++ I Y ++I+ L K GKV+ +F
Sbjct: 453 QKRDMKLDIVTYTTMIEALCKAGKVEDGWDLF 484
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 99/196 (50%)
Query: 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP 136
F + ++ + ++++V++ + ++ + + +A+ + + + C+P
Sbjct: 154 GFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQP 213
Query: 137 DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYF 196
DL+TY V++ L + G + LN M++ + D + YNT+++ L K + +D F
Sbjct: 214 DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLF 273
Query: 197 REMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKM 256
+M GIKPD+ TY LI G ++ RL +DM ++ I P + + +LID K
Sbjct: 274 NKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKE 333
Query: 257 GKVDLAMTIFEEMNSS 272
GK+ A +++EM S
Sbjct: 334 GKLVEAEKLYDEMVKS 349
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 6/273 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLL 60
N I LC G S A RLL + +KNI P+ +N ++ A + + + + L D +
Sbjct: 289 NPLISCLCNYGRWSDASRLLSDMLEKNIN-PDLVFFNALIDAFVKEGKL-VEAEKLYDEM 346
Query: 61 VSSRTLSSD--CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
V S+ D Y + F + + E+ Q + + +I F ++R
Sbjct: 347 VKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARD 406
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
+ A ++F + PD++TYNI+LD L G V L F M++ + D ++Y T
Sbjct: 407 CDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTT 466
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
++ L K +++ F + G+KP+++TYT ++ F R G EE+ LF +MK+
Sbjct: 467 MIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
P+ Y +LI + G + + +EM S
Sbjct: 527 PLPNSGTYNTLIRARLRDGDEAASAELIKEMRS 559
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 113/234 (48%), Gaps = 6/234 (2%)
Query: 39 VLVASAETNDIDLSFQI---LKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVV 95
+L A A+ N DL + +++L +S + Y+ F F + L + +++
Sbjct: 81 LLSAIAKMNKFDLVISLGEQMQNLGISHNLYT---YSIFINYFCRRSQLSLALAILGKMM 137
Query: 96 QIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN 155
++ SI+ +N ++ F +I +A+ + D + + +PD +T+ ++ L + + +
Sbjct: 138 KLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKAS 197
Query: 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215
+ + M G PD ++Y ++N L K DL L +M + I+ D++ Y +I
Sbjct: 198 EAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTII 257
Query: 216 DSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
D + +++++ LFN M+ + I+P ++ Y LI L G+ A + +M
Sbjct: 258 DGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM 311
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 88/180 (48%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
E++ + ++ + I F + Q+ AL I + L P ++T N +L+
Sbjct: 99 EQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHG 158
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
R+++ + M E G PD +++ TL++ L + + + M G +PDL+TY
Sbjct: 159 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 218
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
A+I+ + G + +L L N M++ +I + +Y ++ID L K +D A +F +M +
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET 278
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 96/203 (47%)
Query: 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126
S DC N +R + + ++V+ SI+ ++++ A AK + + + +
Sbjct: 39 SDDCRENLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLG 98
Query: 127 DHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI 186
+ ++ L +L TY+I ++ R +++ L M + G P ++ N+LLN
Sbjct: 99 EQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHG 158
Query: 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVY 246
R+ + +M E G +PD +T+T L+ + E++ L M + +P + Y
Sbjct: 159 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 218
Query: 247 RSLIDNLKKMGKVDLAMTIFEEM 269
++I+ L K G+ DLA+ + +M
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKM 241
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 100 bits (250), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 97/180 (53%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
++E+V+ + + NR+I ++ ++ + +A+ +F+ ++ CKPD +TY ++DI
Sbjct: 386 LLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHA 445
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ G ++ ++ + M+ G+ PD +Y+ ++N L K L F EM + G P+L+
Sbjct: 446 KAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLV 505
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TY ++D + N + +L+L+ DM+ P Y +++ L G ++ A +F EM
Sbjct: 506 TYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEM 565
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 78/139 (56%)
Query: 134 CKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193
C+P+ +TYN ++ GR +N+ +N F M+EAG PD ++Y TL++ K LD+ +
Sbjct: 395 CQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAM 454
Query: 194 IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253
++ M G+ PD TY+ +I+ G+ G++ + +LF +M Q P++ Y ++D
Sbjct: 455 DMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLH 514
Query: 254 KKMGKVDLAMTIFEEMNSS 272
K A+ ++ +M ++
Sbjct: 515 AKARNYQNALKLYRDMQNA 533
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
II K+ + A +F + C P+L+TYNI++D+ + + L + M+ AG
Sbjct: 475 IINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAG 534
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
PD ++Y+ ++ L L+ F EM + PD Y L+D +G+ GN+E++
Sbjct: 535 FEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAW 594
Query: 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ + M +RP++ SL+ ++ K+ A + + M
Sbjct: 595 QWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNM 635
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
Query: 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148
+F E V Q +P +++ N ++ AK+R + AL ++ ++ +PD +TY+IV+++L
Sbjct: 491 LFCEMVDQGCTP-NLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVL 549
Query: 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
G G + + F M++ +PD Y L++ K ++ +++ M +G++P++
Sbjct: 550 GHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNV 609
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
T +L+ +F R I E+ L +M +RPS+ Y L+
Sbjct: 610 PTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLL 651
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 135 KPDLITYNIVLDILGRV---GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191
K D TY ++ LGR G +N +L+E M G P+ ++YN L+++ + L+
Sbjct: 361 KHDGHTYTTMVGNLGRAKQFGAINKLLDE---MVRDGCQPNTVTYNRLIHSYGRANYLNE 417
Query: 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251
+ F +M E+G KPD +TY LID + G ++ ++ ++ M+ + P + Y +I+
Sbjct: 418 AMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIIN 477
Query: 252 NLKKMGKVDLAMTIFEEM 269
L K G + A +F EM
Sbjct: 478 CLGKAGHLPAAHKLFCEM 495
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 165 KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224
++ G D +Y T++ NL + ++ EM G +P+ +TY LI S+GR +
Sbjct: 356 RQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYL 415
Query: 225 EESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
E++ +FN M++ +P Y +LID K G +D+AM +++ M +
Sbjct: 416 NEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAG 463
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/301 (21%), Positives = 137/301 (45%), Gaps = 36/301 (11%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFL-PNAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
IE C+ NV LL ++ +NI + P Y V+ + D+D ++ I+K+++ S
Sbjct: 389 IEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGC 448
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+ YT + F+ + ++E+ + I N +I +K++++++A
Sbjct: 449 RPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARS 508
Query: 125 IFDHIKGLKCKPDLITYNI-----------------------------------VLDILG 149
+ KP+ TY +++
Sbjct: 509 FLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYC 568
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ G+V + + + SM + G++ D +Y L+N L K ++D FREM GI PD+
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVF 628
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+Y LI+ F + GN++++ +F++M ++ + P++ +Y L+ + G+++ A + +EM
Sbjct: 629 SYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688
Query: 270 N 270
+
Sbjct: 689 S 689
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 135/283 (47%), Gaps = 11/283 (3%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDL- 59
N I L KA + A L + + N PNA Y + E ++ + + +K++
Sbjct: 491 NSLIIGLSKAKRMDEARSFLVEMVE-NGLKPNAFTYGAFISGYIEASEFASADKYVKEMR 549
Query: 60 ---LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
++ ++ L + + + + + C+ +++ + + +++N + K+
Sbjct: 550 ECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLF----KN 605
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
+++ A IF ++G PD+ +Y ++++ ++G + + F M E G+ P+ I Y
Sbjct: 606 DKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIY 665
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
N LL + ++ EM G+ P+ +TY +ID + ++G++ E+ RLF++MK
Sbjct: 666 NMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKL 725
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279
+ + P +VY +L+D ++ V+ A+TIF + P
Sbjct: 726 KGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAP 768
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 125/254 (49%), Gaps = 3/254 (1%)
Query: 18 AVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFA 75
A+R+L+ ++++ I P+ YN +++ ++ +D + L +++ + ++ Y F
Sbjct: 471 AMRVLKEMKEQGI-APDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Query: 76 RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK 135
+I + +++E+ + + ++ +I + K ++ +A + +
Sbjct: 530 SGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGIL 589
Query: 136 PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIY 195
D TY ++++ L + +V+D F M+ G+ PD SY L+N K+ +
Sbjct: 590 GDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSI 649
Query: 196 FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255
F EM E G+ P+++ Y L+ F R+G IE++ L ++M + + P+ Y ++ID K
Sbjct: 650 FDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCK 709
Query: 256 MGKVDLAMTIFEEM 269
G + A +F+EM
Sbjct: 710 SGDLAEAFRLFDEM 723
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 136/311 (43%), Gaps = 47/311 (15%)
Query: 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETND-IDLSFQILKDL 59
+C G I + CK G V A +S+ D+ I VL+ ND +D + +I +++
Sbjct: 559 LCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREM 618
Query: 60 LVSSRTLSSDC--YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117
+ ++ D Y F + + +E+V+ ++I+ N ++ F +S
Sbjct: 619 --RGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSG 676
Query: 118 QIEKALLIFDH--IKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS 175
+IEKA + D +KGL P+ +TY ++D + G + + F MK G+VPD
Sbjct: 677 EIEKAKELLDEMSVKGL--HPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFV 734
Query: 176 YNTLLNNLRKIRRLDLCLIYFR---------------------EMGESGI---------- 204
Y TL++ ++ ++ + F + G++ +
Sbjct: 735 YTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMD 794
Query: 205 -------KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG 257
KP+ +TY +ID + GN+E + LF+ M+ + P++ Y SL++ KMG
Sbjct: 795 GSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG 854
Query: 258 KVDLAMTIFEE 268
+ +F+E
Sbjct: 855 RRAEMFPVFDE 865
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 117/268 (43%), Gaps = 7/268 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFL-PNAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I+ L K N AA L+ + I + P Y+C + ++ ++ + + ++ S
Sbjct: 319 IDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGL 378
Query: 65 TLSSDCYTNFARAFIMTDDCTQ---LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
+ Y + + + Q LL+ +++ + SP + ++ S ++
Sbjct: 379 IPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYT---YGTVVKGMCSSGDLDG 435
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
A I + C+P+++ Y ++ + R D + MKE G+ PD YN+L+
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
L K +R+D + EM E+G+KP+ TY A I + + + +M++ + P
Sbjct: 496 GLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLP 555
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ + LI+ K GKV A + + M
Sbjct: 556 NKVLCTGLINEYCKKGKVIEACSAYRSM 583
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 126/277 (45%), Gaps = 23/277 (8%)
Query: 9 LCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLLVSSRTL 66
C++G + A LL + K + PNA Y ++ ++ D+ +F++ ++ +
Sbjct: 672 FCRSGEIEKAKELLDEMSVKGLH-PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730
Query: 67 SSDCYTNFARAFIMTDDCTQL-----LIFIEEVVQIASPESIIVVNRII---FAFAKSRQ 118
S YT + D C +L I I + S N +I F F K+
Sbjct: 731 DSFVYTT------LVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTEL 784
Query: 119 IEKAL-LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
+ L + D KP+ +TYNI++D L + G + F M+ A ++P I+Y
Sbjct: 785 KTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYT 844
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
+LLN K+ R F E +GI+PD + Y+ +I++F + G ++L L + M +
Sbjct: 845 SLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAK 904
Query: 238 Q-----IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ SI R+L+ K+G++++A + E M
Sbjct: 905 NAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENM 941
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 42/202 (20%)
Query: 113 FAKSRQIEKALLIFDHIKGLK----CK---PDLITYNIVLDILGRVGRVNDMLNEFASMK 165
F ++ A L D LK CK P TY++++D L ++ R+ D + M
Sbjct: 245 FKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMD 304
Query: 166 EAGVVPDFISYNTLLNNLRKIRRLD------------------------LCLI------- 194
GV D +Y+ L++ L K R D +C++
Sbjct: 305 SLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVME 364
Query: 195 ----YFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
F M SG+ P Y +LI+ + R N+ + L +MK++ I S Y Y +++
Sbjct: 365 KAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVV 424
Query: 251 DNLKKMGKVDLAMTIFEEMNSS 272
+ G +D A I +EM +S
Sbjct: 425 KGMCSSGDLDGAYNIVKEMIAS 446
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
IE+A+ +F GL+ P L ++LD L R R++ + + M E VV D +Y+
Sbjct: 167 IEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHM 226
Query: 179 LL-----------------NNLRKIRRLDLCLIYFREMGES----GIKPDLLTYTALIDS 217
L+ ++ R L + ++ ES G+ P TY LID
Sbjct: 227 LIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDG 286
Query: 218 FGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+ +E++ L +M + + Y LID L K D A + EM S
Sbjct: 287 LCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVS 340
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 8/142 (5%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ LCK GN+ AA L +++ N+ +P Y +L + F + + + +
Sbjct: 812 IDYLCKEGNLEAAKELFHQMQNANL-MPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEV-----VQIASPESIIVVNRIIFAFAKSRQ 118
Y+ AF+ T+ L+ ++++ V SI ++ FAK +
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGE 930
Query: 119 IEKALLIFDHIKGLKCKPDLIT 140
+E A + +++ L+ PD T
Sbjct: 931 MEVAEKVMENMVRLQYIPDSAT 952
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 98/180 (54%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
F+ +++++ ++ ++ + +IE A+ +FD I G+ KP+++TY ++ L
Sbjct: 140 FLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLC 199
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ +N + F M G P+ ++YN L+ L +I R R+M + I+P+++
Sbjct: 200 KNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVI 259
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
T+TALID+F + G + E+ L+N M Q + P ++ Y SLI+ L G +D A +F M
Sbjct: 260 TFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLM 319
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 89/178 (50%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
E++ + P + N ++ S Q +A + L +PDL+T+ +L+
Sbjct: 107 EQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHW 166
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
R+ D + F + G P+ ++Y TL+ L K R L+ + F +MG +G +P+++TY
Sbjct: 167 NRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTY 226
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
AL+ G ++ L DM +++I P++ + +LID K+GK+ A ++ M
Sbjct: 227 NALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVM 284
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
++I +I AF K ++ +A +++ + + PD+ TY +++ L G +++ F
Sbjct: 257 NVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMF 316
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
M+ G P+ + Y TL++ K +R++ + F EM + G+ + +TYT LI +
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
G + + +FN M ++ P I Y L+D L GKV+ A+ IFE M D+
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDI 431
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 117/263 (44%), Gaps = 3/263 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I LCK +++ AV L + N PN YN ++ E + +L+D++
Sbjct: 195 IRCLCKNRHLNHAVELFNQM-GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRR 253
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ +T AF+ + ++Q++ + +I +++A
Sbjct: 254 IEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEAR 313
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F ++ C P+ + Y ++ + RV D + F M + GVV + I+Y L+
Sbjct: 314 QMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGY 373
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ R D+ F +M PD+ TY L+D G +E++L +F M+++++ +I
Sbjct: 374 CLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINI 433
Query: 244 YVYRSLIDNLKKMGKVDLAMTIF 266
Y +I + K+GKV+ A +F
Sbjct: 434 VTYTIIIQGMCKLGKVEDAFDLF 456
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 96/202 (47%), Gaps = 2/202 (0%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK-SRQIEKALLIFDHI 129
YT R + ++ S +++ N ++ + R + A L+ D +
Sbjct: 191 YTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMM 250
Query: 130 KGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRL 189
K + +P++IT+ ++D +VG++ + + M + V PD +Y +L+N L L
Sbjct: 251 K-RRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL 309
Query: 190 DLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSL 249
D F M +G P+ + YT LI F ++ +E+ +++F +M Q+ + + Y L
Sbjct: 310 DEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVL 369
Query: 250 IDNLKKMGKVDLAMTIFEEMNS 271
I +G+ D+A +F +M+S
Sbjct: 370 IQGYCLVGRPDVAQEVFNQMSS 391
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 9/213 (4%)
Query: 58 DLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117
DL+ + L+ C+ N +D L ++++ + +++ +I K+R
Sbjct: 152 DLVTFTSLLNGYCHWN------RIEDAIALF---DQILGMGFKPNVVTYTTLIRCLCKNR 202
Query: 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
+ A+ +F+ + +P+++TYN ++ L +GR D M + + P+ I++
Sbjct: 203 HLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFT 262
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
L++ K+ +L + M + + PD+ TY +LI+ G ++E+ ++F M++
Sbjct: 263 ALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERN 322
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
P+ +Y +LI K +V+ M IF EM+
Sbjct: 323 GCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMS 355
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 120/278 (43%), Gaps = 21/278 (7%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCV-----------LVASAETNDIDL 51
N + LC+ G A LL+ + + I PN L+ + E ++ +
Sbjct: 227 NALVTGLCEIGRWGDAAWLLRDMMKRRI-EPNVITFTALIDAFVKVGKLMEAKELYNVMI 285
Query: 52 SFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIF 111
+ D+ ++ C + + D+ Q+ +E P +I +I
Sbjct: 286 QMSVYPDVFTYGSLINGLC------MYGLLDEARQMFYLMER--NGCYPNEVIYTT-LIH 336
Query: 112 AFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVP 171
F KS+++E + IF + + ITY +++ VGR + F M P
Sbjct: 337 GFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPP 396
Query: 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLF 231
D +YN LL+ L +++ L+ F M + + +++TYT +I + G +E++ LF
Sbjct: 397 DIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLF 456
Query: 232 NDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ + ++P++ Y ++I + G + A ++F++M
Sbjct: 457 CSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKM 494
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 83/177 (46%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
YT F + + E+ Q + I +I + + + A +F+ +
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
+ PD+ TYN++LD L G+V L F M++ + + ++Y ++ + K+ +++
Sbjct: 391 SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247
F + G+KP+++TYT +I F R G I E+ LF MK+ P+ VY+
Sbjct: 451 DAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 83/157 (52%)
Query: 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
Q AL +F + + P +I + +L ++ ++ R + +++ F M+ G+ P + N
Sbjct: 63 QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
+++ + + + +M + G +PDL+T+T+L++ + IE+++ LF+ +
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274
+P++ Y +LI L K ++ A+ +F +M ++ S
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGS 219
>sp|Q9SAA6|PPR34_ARATH Pentatricopeptide repeat-containing protein At1g11710,
mitochondrial OS=Arabidopsis thaliana GN=At1g11710 PE=2
SV=1
Length = 657
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 139/270 (51%), Gaps = 11/270 (4%)
Query: 7 EKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTL 66
EKL +S +R Q+ P+ ++ ++ A + D ++++++ +
Sbjct: 126 EKLSPLHVLSGLIRSYQACGSS----PDVFDSLVRACTQNGDAQGAYEVIEQTRAEGFCV 181
Query: 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126
S NF + ++ + +E+ + E++ N +I++F K ++ +AL +F
Sbjct: 182 SVHALNNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVF 241
Query: 127 DHIKGLKCK--PDLITYNIVLDILGRVGRVN---DMLNEFASMKEAGVVPDFISYNTLLN 181
+ LKC P+++++N+++D + G + +L + M V P+ ++YN+++N
Sbjct: 242 --YRMLKCGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVIN 299
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
K RLDL +M +SG+ + TY AL+D++GR G+ +E+LRL ++M + +
Sbjct: 300 GFCKAGRLDLAERIRGDMVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVV 359
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+ +Y S++ L G ++ AM++ +MNS
Sbjct: 360 NTVIYNSIVYWLFMEGDIEGAMSVLRDMNS 389
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/271 (22%), Positives = 120/271 (44%), Gaps = 4/271 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLL--QSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKD 58
N I+ CK G++ A++LL + N PNA YN V+ + +DL+ +I D
Sbjct: 257 NMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRGD 316
Query: 59 LLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
++ S + Y A+ + L +E+ + ++ N I++
Sbjct: 317 MVKSGVDCNERTYGALVDAYGRAGSSDEALRLCDEMTSKGLVVNTVIYNSIVYWLFMEGD 376
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
IE A+ + + + D T IV+ L R G V + + + E +V D + +NT
Sbjct: 377 IEGAMSVLRDMNSKNMQIDRFTQAIVVRGLCRNGYVKEAVEFQRQISEKKLVEDIVCHNT 436
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
L+++ + ++L M G+ D +++ LID + + G +E +L +++ M +
Sbjct: 437 LMHHFVRDKKLACADQILGSMLVQGLSLDAISFGTLIDGYLKEGKLERALEIYDGMIKMN 496
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
++ +Y S+++ L K G A + M
Sbjct: 497 KTSNLVIYNSIVNGLSKRGMAGAAEAVVNAM 527
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 113/249 (45%), Gaps = 9/249 (3%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
+ LC+ G V AV + + +K + +N ++ + + QIL +LV
Sbjct: 403 VRGLCRNGYVKEAVEFQRQISEKKLVEDIVCHNTLMHHFVRDKKLACADQILGSMLVQGL 462
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+L + + ++ + L + ++++ ++++ N I+ +K A
Sbjct: 463 SLDAISFGTLIDGYLKEGKLERALEIYDGMIKMNKTSNLVIYNSIVNGLSKRGMAGAAEA 522
Query: 125 IFDHIKGLKCKPDLITYNIVLD---ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
+ + ++ K D++TYN +L+ G V +D+L++ V +++N ++N
Sbjct: 523 V---VNAMEIK-DIVTYNTLLNESLKTGNVEEADDILSKMQKQDGEKSVS-LVTFNIMIN 577
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
+L K + + M E G+ PD +TY LI SF + + E+ + L + + Q + P
Sbjct: 578 HLCKFGSYEKAKEVLKFMVERGVVPDSITYGTLITSFSKHRSQEKVVELHDYLILQGVTP 637
Query: 242 SIYVYRSLI 250
++Y S++
Sbjct: 638 HEHIYLSIV 646
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 3/128 (2%)
Query: 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210
V ++ + M G V + ++N ++ + K +L L F M + G+ P++++
Sbjct: 196 VNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVS 255
Query: 211 YTALIDSFGRTGNIEESLRLFNDMKQQQ---IRPSIYVYRSLIDNLKKMGKVDLAMTIFE 267
+ +ID +TG++ +L+L M + P+ Y S+I+ K G++DLA I
Sbjct: 256 FNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSPNAVTYNSVINGFCKAGRLDLAERIRG 315
Query: 268 EMNSSLSD 275
+M S D
Sbjct: 316 DMVKSGVD 323
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%)
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
N + L + +D ++EM G ++ T+ +I SF + + E+L +F M +
Sbjct: 187 NNFMGCLLNVNEIDRFWKVYKEMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLK 246
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279
+ P++ + +ID K G + A+ + +M + P
Sbjct: 247 CGVWPNVVSFNMMIDGACKTGDMRFALQLLGKMGMMSGNFVSP 289
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 125/265 (47%), Gaps = 3/265 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
IE C+ V A++LL +RD+ P+ YN ++ + +D + + L D+ S
Sbjct: 246 IEATCRDSGVGHAMKLLDEMRDRGC-TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ + R+ T + ++++ S++ N +I + + +A+
Sbjct: 305 CQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAI 364
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
I + + C+P+ ++YN +L + +++ + M G PD ++YNT+L L
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K +++ + ++ G P L+TY +ID + G ++++L ++M+ + ++P
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDT 484
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEE 268
Y SL+ L + GKVD A+ F E
Sbjct: 485 ITYSSLVGGLSREGKVDEAIKFFHE 509
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 131/267 (49%), Gaps = 11/267 (4%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N + +CK G + A++ L + PN +N +L + T + ++L D+L
Sbjct: 278 NVLVNGICKEGRLDEAIKFLNDMPSSGC-QPNVITHNIILRSMCSTGRWMDAEKLLADML 336
Query: 61 ---VSSRTLSSDCYTNF-ARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
S ++ + NF R ++ + + +E++ Q + + N ++ F K
Sbjct: 337 RKGFSPSVVTFNILINFLCRKGLLG----RAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
+++++A+ + + C PD++TYN +L L + G+V D + + G P I+Y
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITY 452
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
NT+++ L K + + EM +KPD +TY++L+ R G ++E+++ F++ ++
Sbjct: 453 NTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFER 512
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAM 263
IRP+ + S++ L K + D A+
Sbjct: 513 MGIRPNAVTFNSIMLGLCKSRQTDRAI 539
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 101/200 (50%), Gaps = 3/200 (1%)
Query: 73 NFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132
N R + T + + F+E +V + II +I F + + KA I + ++G
Sbjct: 107 NHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGS 166
Query: 133 KCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192
PD+ITYN+++ + G +N+ L+ M V PD ++YNT+L +L +L
Sbjct: 167 GAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQA 223
Query: 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDN 252
+ M + PD++TYT LI++ R + +++L ++M+ + P + Y L++
Sbjct: 224 MEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNG 283
Query: 253 LKKMGKVDLAMTIFEEMNSS 272
+ K G++D A+ +M SS
Sbjct: 284 ICKEGRLDEAIKFLNDMPSS 303
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/273 (21%), Positives = 130/273 (47%), Gaps = 7/273 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N + LC +G + A+ +L + ++ + P+ Y ++ A+ + + + ++L ++
Sbjct: 208 NTILRSLCDSGKLKQAMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMR 266
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS-RQI 119
T Y + + F+ ++ ++I N I+ + + R +
Sbjct: 267 DRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWM 326
Query: 120 EKALLIFDHI-KGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
+ L+ D + KG P ++T+NI+++ L R G + ++ M + G P+ +SYN
Sbjct: 327 DAEKLLADMLRKGFS--PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNP 384
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
LL+ K +++D + Y M G PD++TY ++ + + G +E+++ + N + +
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
P + Y ++ID L K GK A+ + +EM +
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 94/171 (54%), Gaps = 1/171 (0%)
Query: 99 SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDML 158
SP+ ++ N I+ + S ++++A+ + D + C PD+ITY I+++ R V +
Sbjct: 201 SPD-VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF 218
M++ G PD ++YN L+N + K RLD + + +M SG +P+++T+ ++ S
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 219 GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TG ++ +L DM ++ PS+ + LI+ L + G + A+ I E+M
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKM 370
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 122/272 (44%), Gaps = 6/272 (2%)
Query: 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDL 59
C I C+ G A ++L+ L +P+ YN ++ + +I+ + +L +
Sbjct: 140 CTTLIRGFCRLGKTRKAAKILEILEGSGA-VPDVITYNVMISGYCKAGEINNALSVLDRM 198
Query: 60 LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
VS ++ Y R+ + Q + ++ ++Q +I +I A + +
Sbjct: 199 SVSPDVVT---YNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGV 255
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
A+ + D ++ C PD++TYN++++ + + GR+++ + M +G P+ I++N +
Sbjct: 256 GHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNII 315
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
L ++ R +M G P ++T+ LI+ R G + ++ + M Q
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGC 375
Query: 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+P+ Y L+ K K+D A+ E M S
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVS 407
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 117/266 (43%), Gaps = 3/266 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
+ +C G A +LL + K F P+ +N ++ + + IL+ +
Sbjct: 316 LRSMCSTGRWMDAEKLLADMLRKG-FSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHG 374
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+S Y F + + ++E +V I+ N ++ A K ++E A+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
I + + C P LITYN V+D L + G+ + M+ + PD I+Y++L+ L
Sbjct: 435 EILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGL 494
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ ++D + +F E GI+P+ +T+ +++ ++ + ++ M + +P+
Sbjct: 495 SREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNE 554
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEM 269
Y LI+ L G A+ + E+
Sbjct: 555 TSYTILIEGLAYEGMAKEALELLNEL 580
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIF-LPNAYNCVLVASAETNDIDLSFQILKDLLV 61
N + LCK G V AV +L L K + YN V+ A+ + ++L ++
Sbjct: 418 NTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRA 477
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
+ Y++ + + F E ++ + + N I+ KSRQ ++
Sbjct: 478 KDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDR 537
Query: 122 AL--LIFDHIKGLKCKPDLITYNIVLDILGRVGRVN---DMLNEFAS 163
A+ L+F +G CKP+ +Y I+++ L G ++LNE +
Sbjct: 538 AIDFLVFMINRG--CKPNETSYTILIEGLAYEGMAKEALELLNELCN 582
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 141/307 (45%), Gaps = 38/307 (12%)
Query: 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVS 62
YI LC+ + A ++ + ++ + LPN Y+ ++ +T ++ ++ + K++LV+
Sbjct: 240 YILDLCRDNKMEEAEKMFELMKKHGV-LPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVA 298
Query: 63 SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA 122
+ + F + +V+ ++ V N +I KS + +A
Sbjct: 299 ELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEA 358
Query: 123 LLIFDHIKGLKCKPDLITYNIVLD---ILGRVGRVNDMLNEF------------------ 161
+ + ++ L PD+ TY I+++ I +V N + +
Sbjct: 359 VGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHG 418
Query: 162 --------------ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD 207
+ M +GV P+ I+++TL++ +R + + + EM GI PD
Sbjct: 419 YCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPD 478
Query: 208 LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFE 267
++TYTALID+ + N++E+LRL++DM + I P+ + + L+D K G++ +A+ ++
Sbjct: 479 VVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQ 538
Query: 268 EMNSSLS 274
E N S
Sbjct: 539 ENNQQRS 545
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 120/258 (46%), Gaps = 19/258 (7%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYN--------CVLVASAETNDIDLSFQ 54
N I CK+GN+ AV LL + N+ P+ + C+ AE N + FQ
Sbjct: 343 NCLIHGHCKSGNMLEAVGLLSEMESLNLS-PDVFTYTILINGLCIEDQVAEANRL---FQ 398
Query: 55 ILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114
+K+ + SS Y + + + Q L E+ +II + +I +
Sbjct: 399 KMKNERIFP---SSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYC 455
Query: 115 KSRQIEKAL-LIFD-HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD 172
R I+ A+ L F+ IKG+ PD++TY ++D + + + L ++ M EAG+ P+
Sbjct: 456 NVRDIKAAMGLYFEMTIKGIV--PDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPN 513
Query: 173 FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFN 232
++ L++ K RL + + +++E + + + +T LI+ + G I + R F+
Sbjct: 514 DHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFS 573
Query: 233 DMKQQQIRPSIYVYRSLI 250
DM+ I P I Y S++
Sbjct: 574 DMRSCGITPDICSYVSML 591
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 89/179 (49%)
Query: 91 IEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150
++E+ + ++ + I + ++E+A +F+ +K P+L TY+ ++D +
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281
Query: 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210
G V + + A ++P+ + + TL++ K R L F M + G+ P+L
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYV 341
Query: 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
Y LI ++GN+ E++ L ++M+ + P ++ Y LI+ L +V A +F++M
Sbjct: 342 YNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKM 400
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 97 IASPE-SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN 155
I SP+ SI V + +I F + E+AL + + +KC PD +L+ L R R +
Sbjct: 125 IQSPKFSIGVFSLLIMEFLEMGLFEEALWV---SREMKCSPDSKACLSILNGLVRRRRFD 181
Query: 156 DMLNEFASMKEAGVVPDFISYNTLLNNL-------RKIRRLDLCLIYFREMGESGIKPDL 208
+ ++ M G+VPD Y L +K + LD EM GIKP++
Sbjct: 182 SVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKLLD-------EMTSLGIKPNV 234
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268
YT I R +EE+ ++F MK+ + P++Y Y ++ID K G V A +++E
Sbjct: 235 YIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKE 294
Query: 269 M 269
+
Sbjct: 295 I 295
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 73/147 (49%)
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+ D + L KP++ Y I + L R ++ + F MK+ GV+P+ +Y+ +++
Sbjct: 221 LLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYC 280
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
K + ++E+ + + P+++ + L+D F + + + LF M + + P++Y
Sbjct: 281 KTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEEMNS 271
VY LI K G + A+ + EM S
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMES 367
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/274 (17%), Positives = 112/274 (40%), Gaps = 38/274 (13%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDLLVSSR 64
I LC V+ A RL Q ++++ IF +A YN ++ + +++ + + ++ S
Sbjct: 381 INGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGV 440
Query: 65 TLSSDCYTNFARAFIMTDDCTQLL-IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ ++ + D + ++ E ++ P+ ++ +I A K +++AL
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPD-VVTYTALIDAHFKEANMKEAL 499
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVN---DMLNE-------------------- 160
++ + P+ T+ ++D + GR++ D E
Sbjct: 500 RLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGL 559
Query: 161 ------------FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
F+ M+ G+ PD SY ++L + +R+ ++ +M ++GI P+L
Sbjct: 560 CQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNL 619
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242
L L + G ++ + L N + + + S
Sbjct: 620 LVNQLLARFYQANGYVKSACFLTNSSRLKTVSNS 653
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 98/182 (53%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
F+ +++++ I+ +I F ++E+A+ + + + + KPD++ Y ++D L
Sbjct: 129 FLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLC 188
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ G VN L+ F M+ G+ PD + Y +L+N L R R M + IKPD++
Sbjct: 189 KNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVI 248
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
T+ ALID+F + G ++ L+N+M + I P+I+ Y SLI+ G VD A +F M
Sbjct: 249 TFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLM 308
Query: 270 NS 271
+
Sbjct: 309 ET 310
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 102/201 (50%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+T+ F + + + + + ++V++ +++ II + K+ + AL +FD ++
Sbjct: 145 FTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQME 204
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
+PD++ Y +++ L GR D + M + + PD I++N L++ K +
Sbjct: 205 NYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFL 264
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+ EM I P++ TYT+LI+ F G ++E+ ++F M+ + P + Y SLI
Sbjct: 265 DAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLI 324
Query: 251 DNLKKMGKVDLAMTIFEEMNS 271
+ K KVD AM IF EM+
Sbjct: 325 NGFCKCKKVDDAMKIFYEMSQ 345
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%)
Query: 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162
+I N +I AF K + A +++ + + P++ TY +++ G V++ F
Sbjct: 247 VITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFY 306
Query: 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222
M+ G PD ++Y +L+N K +++D + F EM + G+ + +TYT LI FG+ G
Sbjct: 307 LMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVG 366
Query: 223 NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279
+ +F+ M + + P+I Y L+ L GKV A+ IFE+M D P
Sbjct: 367 KPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAP 423
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 132/274 (48%), Gaps = 16/274 (5%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCV---LVASAETNDIDLSFQILKDLL 60
I+ LCK G+V+ A+ L + + I P+ Y + L S D D +L+ +
Sbjct: 184 IDSLCKNGHVNYALSLFDQMENYGI-RPDVVMYTSLVNGLCNSGRWRDAD---SLLRGM- 238
Query: 61 VSSRTLSSDCYTNFA--RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
+ R + D T A AF+ E+++++ +I +I F
Sbjct: 239 -TKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC 297
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
+++A +F ++ C PD++ Y +++ + +V+D + F M + G+ + I+Y T
Sbjct: 298 VDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTT 357
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
L+ ++ + ++ F M G+ P++ TY L+ G ++++L +F DM++++
Sbjct: 358 LIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKRE 417
Query: 239 ---IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ P+I+ Y L+ L GK++ A+ +FE+M
Sbjct: 418 MDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDM 451
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 2/208 (0%)
Query: 51 LSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRII 110
LSF L DL R + Y R + + + L +V+ SII +++
Sbjct: 22 LSFSRLLDLSFWVRAFCN--YREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLL 79
Query: 111 FAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV 170
AK ++ + + + DH++ + DL T N++++ + + + M + G
Sbjct: 80 NVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFE 139
Query: 171 PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRL 230
PD +++ +L+N R++ + +M E GIKPD++ YT +IDS + G++ +L L
Sbjct: 140 PDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSL 199
Query: 231 FNDMKQQQIRPSIYVYRSLIDNLKKMGK 258
F+ M+ IRP + +Y SL++ L G+
Sbjct: 200 FDQMENYGIRPDVVMYTSLVNGLCNSGR 227
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 90/155 (58%)
Query: 115 KSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI 174
S Q +AL +F H+ + P +I + +L+++ ++ + + ++N ++ GV D
Sbjct: 49 HSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLY 108
Query: 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234
+ N L+N + + L + +M + G +PD++T+T+LI+ F +EE++ + N M
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM 168
Query: 235 KQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ I+P + +Y ++ID+L K G V+ A+++F++M
Sbjct: 169 VEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM 203
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 86/169 (50%)
Query: 101 ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160
+ N ++ F +S Q A + L +PD++T+ +++ R+ + ++
Sbjct: 105 HDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSM 164
Query: 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220
M E G+ PD + Y T++++L K ++ L F +M GI+PD++ YT+L++
Sbjct: 165 VNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCN 224
Query: 221 TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+G ++ L M +++I+P + + +LID K GK A ++ EM
Sbjct: 225 SGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEM 273
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 3/202 (1%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
YT+ F + E+ Q + I +I F + + A +F H+
Sbjct: 320 YTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMV 379
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA---GVVPDFISYNTLLNNLRKIR 187
P++ TYN++L L G+V L F M++ GV P+ +YN LL+ L
Sbjct: 380 SRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNG 439
Query: 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247
+L+ L+ F +M + + ++TYT +I + G ++ ++ LF + + ++P++ Y
Sbjct: 440 KLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYT 499
Query: 248 SLIDNLKKMGKVDLAMTIFEEM 269
++I L + G A +F +M
Sbjct: 500 TMISGLFREGLKHEAHVLFRKM 521
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 106/239 (44%), Gaps = 6/239 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I C G V A ++ + K F P+ AY ++ + +D + +I ++
Sbjct: 289 INGFCMEGCVDEARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKG 347
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
T ++ YT + F +V P +I N ++ + +++KAL
Sbjct: 348 LTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKAL 407
Query: 124 LIFDHIKGLK---CKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+IF+ ++ + P++ TYN++L L G++ L F M++ + I+Y ++
Sbjct: 408 MIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIII 467
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+ K ++ + F + G+KP+++TYT +I R G E+ LF MK+ +
Sbjct: 468 QGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGV 526
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 3/271 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I G + A L+ ++ K F P YN V+ + + + ++ ++L
Sbjct: 274 NTLISAYSSKGLMEEAFELMNAMPGKG-FSPGVYTYNTVINGLCKHGKYERAKEVFAEML 332
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
S + S Y + D + ++ ++ + ++ F +S ++
Sbjct: 333 RSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 392
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
KAL+ F+ +K PD + Y I++ R G ++ +N M + G D ++YNT+L
Sbjct: 393 KALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ L K + L F EM E + PD T T LID + GN++ ++ LF MK+++IR
Sbjct: 453 HGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIR 512
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+ Y +L+D K+G +D A I+ +M S
Sbjct: 513 LDVVTYNTLLDGFGKVGDIDTAKEIWADMVS 543
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 9/242 (3%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I+ CK GN+ A+ L Q +++K I L YN +L + DID + +I D++
Sbjct: 487 IDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEI 546
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+ Y+ A + +E++ ++++ N +I + +S
Sbjct: 547 LPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGES 606
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK-----EAGVVPDFISYNTL 179
+ + PD I+YN + I G V R +M F +K + G+VPD +YN++
Sbjct: 607 FLEKMISEGFVPDCISYNTL--IYGFV-REENMSKAFGLVKKMEEEQGGLVPDVFTYNSI 663
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
L+ + ++ + R+M E G+ PD TYT +I+ F N+ E+ R+ ++M Q+
Sbjct: 664 LHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGF 723
Query: 240 RP 241
P
Sbjct: 724 SP 725
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/273 (23%), Positives = 128/273 (46%), Gaps = 11/273 (4%)
Query: 3 NGYIEKLCKAGNVSAAVRLL-QSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61
N I LCK G A + + LR Y +L+ + + D+ + ++ D+
Sbjct: 309 NTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM-- 366
Query: 62 SSRTLSSD--CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
SR + D C+++ F + + + L++ V + ++ +I + + I
Sbjct: 367 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 426
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGR---VGRVNDMLNEFASMKEAGVVPDFISY 176
A+ + + + C D++TYN +L L + +G + + NE M E + PD +
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNE---MTERALFPDSYTL 483
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
L++ K+ L + F++M E I+ D++TY L+D FG+ G+I+ + ++ DM
Sbjct: 484 TILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVS 543
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
++I P+ Y L++ L G + A +++EM
Sbjct: 544 KEILPTPISYSILVNALCSKGHLAEAFRVWDEM 576
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/262 (19%), Positives = 122/262 (46%), Gaps = 3/262 (1%)
Query: 10 CKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSSRTLS 67
CK G+V ++ +R +++ +P+ ++ ++ + ++D + + +
Sbjct: 351 CKKGDVVETEKVFSDMRSRDV-VPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPD 409
Query: 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFD 127
+ YT + + + + E++Q ++ N I+ K + + +A +F+
Sbjct: 410 NVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN 469
Query: 128 HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187
+ PD T I++D ++G + + + F MKE + D ++YNTLL+ K+
Sbjct: 470 EMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVG 529
Query: 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247
+D + +M I P ++Y+ L+++ G++ E+ R++++M + I+P++ +
Sbjct: 530 DIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICN 589
Query: 248 SLIDNLKKMGKVDLAMTIFEEM 269
S+I + G + E+M
Sbjct: 590 SMIKGYCRSGNASDGESFLEKM 611
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 88/181 (48%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
+E+ + ++ +N ++ A K ++EK ++ PD++TYN ++
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
G + + +M G P +YNT++N L K + + F EM SG+ PD TY
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+L+ + G++ E+ ++F+DM+ + + P + + S++ + G +D A+ F +
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 272 S 272
+
Sbjct: 404 A 404
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 75/168 (44%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
+I K ++ A+ +F +K + + D++TYN +LD G+VG ++ +A M
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
++P ISY+ L+N L L + EM IKP ++ ++I + R+GN +
Sbjct: 546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605
Query: 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
M + P Y +LI + + A + ++M L
Sbjct: 606 SFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGL 653
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/174 (17%), Positives = 63/174 (36%), Gaps = 36/174 (20%)
Query: 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKD 58
+CN I+ C++GN S L+ + + F+P+ +YN ++ ++ +F ++K
Sbjct: 587 ICNSMIKGYCRSGNASDGESFLEKMISEG-FVPDCISYNTLIYGFVREENMSKAFGLVKK 645
Query: 59 LLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
+ L D +T N I+ F + Q
Sbjct: 646 MEEEQGGLVPDVFT---------------------------------YNSILHGFCRQNQ 672
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD 172
+++A ++ + PD TY +++ + + M + G PD
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPD 726
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 99/180 (55%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
++E+V+ + + NR+I ++ ++ +++A+ +F+ ++ C+PD +TY ++DI
Sbjct: 381 LLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHA 440
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ G ++ ++ + M+EAG+ PD +Y+ ++N L K L F EM G P+L+
Sbjct: 441 KAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLV 500
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
T+ +I + N E +L+L+ DM+ +P Y +++ L G ++ A +F EM
Sbjct: 501 TFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEM 560
Score = 90.9 bits (224), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 89/164 (54%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
++ +++Q + + D + CKP+ +TYN ++ GR + + +N F M+EAG
Sbjct: 365 MVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAG 424
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
PD ++Y TL++ K LD+ + ++ M E+G+ PD TY+ +I+ G+ G++ +
Sbjct: 425 CEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAH 484
Query: 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
RLF +M Q P++ + +I K + A+ ++ +M ++
Sbjct: 485 RLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNA 528
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Query: 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148
+F E V Q +P +++ N +I AK+R E AL ++ ++ +PD +TY+IV+++L
Sbjct: 486 LFCEMVGQGCTP-NLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVL 544
Query: 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
G G + + FA M+ VPD Y L++ K +D +++ M ++G++P++
Sbjct: 545 GHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNV 604
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
T +L+ +F R + E+ L M + PS+ Y L+
Sbjct: 605 PTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 646
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
II K+ + A +F + G C P+L+T+NI++ + + L + M+ AG
Sbjct: 470 IINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAG 529
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
PD ++Y+ ++ L L+ F EM PD Y L+D +G+ GN++++
Sbjct: 530 FQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVDKAW 589
Query: 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ + M Q +RP++ SL+ ++ ++ A + + M
Sbjct: 590 QWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSM 630
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 135 KPDLITYNIVLDILGRV---GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191
K D TY ++ LGR G +N +L+E M G P+ ++YN L+++ + L
Sbjct: 356 KHDGHTYTTMVGNLGRAKQFGEINKLLDE---MVRDGCKPNTVTYNRLIHSYGRANYLKE 412
Query: 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251
+ F +M E+G +PD +TY LID + G ++ ++ ++ M++ + P + Y +I+
Sbjct: 413 AMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIIN 472
Query: 252 NLKKMGKVDLAMTIFEEM 269
L K G + A +F EM
Sbjct: 473 CLGKAGHLPAAHRLFCEM 490
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 58/108 (53%)
Query: 165 KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224
++ G D +Y T++ NL + ++ EM G KP+ +TY LI S+GR +
Sbjct: 351 RQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYL 410
Query: 225 EESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+E++ +FN M++ P Y +LID K G +D+AM +++ M +
Sbjct: 411 KEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEA 458
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 117/239 (48%)
Query: 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEE 93
NAYN V+ A+ ++++F K S + + Y N F+ + E
Sbjct: 244 NAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 303
Query: 94 VVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153
+ + S II + AKS +++ A +F +K K +P ++ ++D +G+ GR
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 363
Query: 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTA 213
++ + + M+ G P + +L+++ K +LD L + EM +SG +P+ YT
Sbjct: 364 LDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTM 423
Query: 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+I+S ++G +E ++ +F DM++ P+ Y L++ G+VD AM I+ M ++
Sbjct: 424 IIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNA 482
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 14/285 (4%)
Query: 1 MCNGYIEKLCKAGNVSAAVRLLQSLR---------DKNIFLPNAYNCVLVASAETNDIDL 51
M G + A +V+ V ++Q + DK F+PN + + + ++D
Sbjct: 129 MVGGLKKPYMNASSVAKIVEVVQRWKWGPELETQLDKLQFVPNMVH-ITQSLKIVKEVDA 187
Query: 52 SFQILKDLLVSSRTLSSD-CYTNFARAFIMTDDCTQLLIFIEEVVQIASPE---SIIVVN 107
+ + + L SD CY D + EE+VQ +S S N
Sbjct: 188 ALSLFRWAKKQPWYLPSDECYVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYN 247
Query: 108 RIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA 167
++I AK+ ++E A F + CK D TYN ++ + G + SM++
Sbjct: 248 QVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKT 307
Query: 168 GVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEES 227
+ D +Y ++ +L K RLD F++M E ++P +++L+DS G+ G ++ S
Sbjct: 308 DSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTS 367
Query: 228 LRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
++++ +M+ RPS ++ SLID+ K GK+D A+ +++EM S
Sbjct: 368 MKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKS 412
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 119/268 (44%), Gaps = 2/268 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVAS-AETNDIDLSFQILKDLLVSSR 64
I L K+G + AA +L Q ++++ + + LV S + +D S ++ ++
Sbjct: 320 IPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGH 379
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
S+ + + ++ L +E+ + + + II + AKS ++E A+
Sbjct: 380 RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMT 439
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+F ++ P TY+ +L++ G+V+ + + SM AG+ P SY +LL L
Sbjct: 440 VFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLA 499
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
R +D+ EM G D+ L+ + + +++ +L+ M I+ + +
Sbjct: 500 NKRLVDVAGKILLEMKAMGYSVDVCASDVLM-IYIKDASVDLALKWLRFMGSSGIKTNNF 558
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ R L ++ K G D A + E + S
Sbjct: 559 IIRQLFESCMKNGLYDSARPLLETLVHS 586
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 99.0 bits (245), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 97/180 (53%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
++++V++ +I + +A+ + D + C+PDL+TY V++ L
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ G ++ L+ M++ + D + YNT+++ L K + +D L F EM GI+PD+
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TY++LI G ++ RL +DM +++I P++ + +LID K GK+ A +++EM
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 105/201 (52%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+T + + ++ + ++++VQ ++ ++ K I+ AL + ++
Sbjct: 191 FTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKME 250
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K + D++ YN ++D L + ++D LN F M G+ PD +Y++L++ L R
Sbjct: 251 KGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWS 310
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+M E I P+++T++ALID+F + G + E+ +L+++M ++ I P I+ Y SLI
Sbjct: 311 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 370
Query: 251 DNLKKMGKVDLAMTIFEEMNS 271
+ ++D A +FE M S
Sbjct: 371 NGFCMHDRLDEAKHMFELMIS 391
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 130/266 (48%), Gaps = 3/266 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLS--FQILKDLL 60
N I+ LCK ++ A+ L + +K I P+ + + S N S ++L D++
Sbjct: 262 NTIIDGLCKYKHMDDALNLFTEMDNKGI-RPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ ++ AF+ + +E+++ + I + +I F +++
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A +F+ + C P+++TY+ ++ + RV + + F M + G+V + ++Y TL+
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ + R D + F++M G+ P++LTY L+D + G + +++ +F +++ +
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTME 500
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIF 266
P IY Y +I+ + K GKV+ +F
Sbjct: 501 PDIYTYNIMIEGMCKAGKVEDGWELF 526
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 117/236 (49%), Gaps = 4/236 (1%)
Query: 36 YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTN--FARAFIMTDDCTQLLIFIEE 93
+N +L A A+ N +L + + + + +S D YT F F + L + +
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQM--QTLGISHDLYTYSIFINCFCRRSQLSLALAVLAK 143
Query: 94 VVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153
++++ I+ ++ ++ + S++I A+ + D + + KPD T+ ++ L +
Sbjct: 144 MMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNK 203
Query: 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTA 213
++ + M + G PD ++Y T++N L K +DL L ++M + I+ D++ Y
Sbjct: 204 ASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNT 263
Query: 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ID + +++++L LF +M + IRP ++ Y SLI L G+ A + +M
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDM 319
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 131/277 (47%), Gaps = 19/277 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQIL-------- 56
+ LCK G++ A+ LL+ + I YN ++ + +D + +
Sbjct: 230 VNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGI 289
Query: 57 -KDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115
D+ S +S C N+ R D ++LL ++++ +++ + +I AF K
Sbjct: 290 RPDVFTYSSLIS--CLCNYGRW----SDASRLL---SDMIERKINPNVVTFSALIDAFVK 340
Query: 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS 175
++ +A ++D + PD+ TY+ +++ R+++ + F M P+ ++
Sbjct: 341 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 400
Query: 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235
Y+TL+ K +R++ + FREM + G+ + +TYT LI F + + + + +F M
Sbjct: 401 YSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 460
Query: 236 QQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ P+I Y L+D L K GK+ AM +FE + S
Sbjct: 461 SVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 497
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 112/233 (48%), Gaps = 3/233 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I C + A + + + K+ F PN Y+ ++ + ++ ++ +++
Sbjct: 370 INGFCMHDRLDEAKHMFELMISKDCF-PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRG 428
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
++ YT F DC + +++V + +I+ N ++ K+ ++ KA+
Sbjct: 429 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAM 488
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
++F++++ +PD+ TYNI+++ + + G+V D F ++ GV P+ I+YNT+++
Sbjct: 489 VVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGF 548
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
+ + ++M E G P+ TY LI + R G+ E S L +M+
Sbjct: 549 CRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRS 601
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 89/168 (52%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SI+ N+++ A AK + E + + + ++ L DL TY+I ++ R +++ L
Sbjct: 82 SIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVL 141
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
A M + G PD ++ ++LLN +R+ + +M E G KPD T+T LI
Sbjct: 142 AKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLH 201
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
E++ L + M Q+ +P + Y ++++ L K G +DLA+++ ++M
Sbjct: 202 NKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM 249
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 99/212 (46%), Gaps = 6/212 (2%)
Query: 66 LSSDC------YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
+S DC Y+ + F + + E+ Q + + +I F ++R
Sbjct: 390 ISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDC 449
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
+ A ++F + + P+++TYNI+LD L + G++ + F ++ + + PD +YN +
Sbjct: 450 DNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIM 509
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+ + K +++ F + G+ P+++ Y +I F R G+ EE+ L MK+
Sbjct: 510 IEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGP 569
Query: 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
P+ Y +LI + G + + + +EM S
Sbjct: 570 LPNSGTYNTLIRARLRDGDREASAELIKEMRS 601
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 96/187 (51%), Gaps = 1/187 (0%)
Query: 86 QLLIFIEEVVQ-IASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144
+L+I + E +Q + + + I F + Q+ AL + + L +PD++T + +
Sbjct: 100 ELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSL 159
Query: 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI 204
L+ R++D + M E G PD ++ TL++ L + + +M + G
Sbjct: 160 LNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGC 219
Query: 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
+PDL+TY +++ + G+I+ +L L M++ +I + +Y ++ID L K +D A+
Sbjct: 220 QPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALN 279
Query: 265 IFEEMNS 271
+F EM++
Sbjct: 280 LFTEMDN 286
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
+V+D ++ F M ++ P + +N LL+ + K+ + +L + +M GI DL TY+
Sbjct: 63 KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
I+ F R + +L + M + P I SL++ ++ A+ + ++M
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQM 179
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+++++ LF DM + + PSI + L+ + KM K +L +++ E+M +
Sbjct: 64 VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQT 111
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 137/279 (49%), Gaps = 7/279 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLV 61
N + +C++G+ S A+ LL+ + ++N+ Y+ ++ + ID + + K++
Sbjct: 197 NSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 256
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
S Y + R + ++++V ++I N ++ F K ++++
Sbjct: 257 KGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQE 316
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLD---ILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
A ++ + P++ITYN ++D + R+ N+ML+ K + PD +++ +
Sbjct: 317 ANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS---PDIVTFTS 373
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
L+ ++R+D + FR + + G+ + +TY+ L+ F ++G I+ + LF +M
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277
+ P + Y L+D L GK++ A+ IFE++ S DL
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLG 472
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 129/262 (49%), Gaps = 1/262 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I+ LC+ G + AA+ L + + K I YN ++ + + +LKD++
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+ + F+ + +E++ +II N ++ + ++ +A
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANN 354
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+ D + KC PD++T+ ++ V RV+D + F ++ + G+V + ++Y+ L+
Sbjct: 355 MLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFC 414
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
+ ++ L F+EM G+ PD++TY L+D G +E++L +F D+++ ++ I
Sbjct: 415 QSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIV 474
Query: 245 VYRSLIDNLKKMGKVDLAMTIF 266
+Y ++I+ + K GKV+ A +F
Sbjct: 475 MYTTIIEGMCKGGKVEDAWNLF 496
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 107/213 (50%), Gaps = 1/213 (0%)
Query: 60 LVSSRTLSSDC-YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
++ SR L S ++ F A T +L F +++ +I +N +I F + +
Sbjct: 79 MIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK 138
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
A + + L +PD T+N ++ L G+V++ + M E G PD ++YN+
Sbjct: 139 TCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNS 198
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
++N + + L L R+M E +K D+ TY+ +IDS R G I+ ++ LF +M+ +
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
I+ S+ Y SL+ L K GK + + ++M S
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS 291
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 93/177 (52%)
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
+V+++ N +I ++ +A+++ D + C+PD++TYN +++ + R G
Sbjct: 148 KVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSG 207
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
+ L+ M+E V D +Y+T++++L + +D + F+EM GIK ++TY
Sbjct: 208 DTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYN 267
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+L+ + G + L DM ++I P++ + L+D K GK+ A +++EM
Sbjct: 268 SLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEM 324
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 129/281 (45%), Gaps = 6/281 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N + LCKAG + LL+ + + I +PN +N +L + + + ++ K+++
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVSREI-VPNVITFNVLLDVFVKEGKLQEANELYKEMI 325
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ + Y + M + ++ ++ +V+ I+ +I + ++++
Sbjct: 326 TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVD 385
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+ +F +I + +TY+I++ + G++ F M GV+PD ++Y LL
Sbjct: 386 DGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILL 445
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ L +L+ L F ++ +S + ++ YT +I+ + G +E++ LF + + ++
Sbjct: 446 DGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVK 505
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKD 281
P++ Y +I L K G + A + +M D P D
Sbjct: 506 PNVMTYTVMISGLCKKGSLSEANILLRKME---EDGNAPND 543
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 91/182 (50%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+ + + ++ ++ ++ +V+ ++ N I+ +S AL + ++
Sbjct: 161 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKME 220
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K D+ TY+ ++D L R G ++ ++ F M+ G+ ++YN+L+ L K + +
Sbjct: 221 ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWN 280
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+ ++M I P+++T+ L+D F + G ++E+ L+ +M + I P+I Y +L+
Sbjct: 281 DGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLM 340
Query: 251 DN 252
D
Sbjct: 341 DG 342
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 92/200 (46%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
Y + + D + L + ++ + + + II + + I+ A+ +F ++
Sbjct: 196 YNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEME 255
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K ++TYN ++ L + G+ ND M +VP+ I++N LL+ K +L
Sbjct: 256 TKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQ 315
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
++EM GI P+++TY L+D + + E+ + + M + + P I + SLI
Sbjct: 316 EANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLI 375
Query: 251 DNLKKMGKVDLAMTIFEEMN 270
+ +VD M +F ++
Sbjct: 376 KGYCMVKRVDDGMKVFRNIS 395
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 78/162 (48%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
+E+V ++ ++ + ++EKAL IF+ ++ K ++ Y +++ + +
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
G+V D N F S+ GV P+ ++Y +++ L K L I R+M E G P+ TY
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253
LI + R G++ S +L +MK + +ID L
Sbjct: 547 NTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDML 588
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 122/265 (46%), Gaps = 7/265 (2%)
Query: 11 KAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS 68
K G + A L + + + I PN YN ++ N + + +L DL+V ++ S
Sbjct: 310 KEGKLQEANELYKEMITRGIS-PNIITYNTLMDGYCMQNRLSEANNML-DLMVRNKC-SP 366
Query: 69 D--CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126
D +T+ + + M + + + + + + ++ F +S +I+ A +F
Sbjct: 367 DIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELF 426
Query: 127 DHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI 186
+ PD++TY I+LD L G++ L F ++++ + + Y T++ + K
Sbjct: 427 QEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKG 486
Query: 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVY 246
+++ F + G+KP+++TYT +I + G++ E+ L M++ P+ Y
Sbjct: 487 GKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTY 546
Query: 247 RSLIDNLKKMGKVDLAMTIFEEMNS 271
+LI + G + + + EEM S
Sbjct: 547 NTLIRAHLRDGDLTASAKLIEEMKS 571
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 132/263 (50%), Gaps = 3/263 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ LCK + A+ L + +K + PN Y+ ++ + ++L D++
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENKGV-RPNVITYSSLISCLCNYERWSDASRLLSDMIERK 325
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ + AF+ + +E+++ + I + +I F ++++A
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 385
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+F+ + C P+++TYN +++ + R+++ + F M + G+V + ++Y TL++
Sbjct: 386 HMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ R D + F++M G+ P+++TY L+D + G +E+++ +F +++ ++ P+I
Sbjct: 446 FQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 505
Query: 244 YVYRSLIDNLKKMGKVDLAMTIF 266
Y Y +I+ + K GKV+ +F
Sbjct: 506 YTYNIMIEGMCKAGKVEDGWDLF 528
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 138/279 (49%), Gaps = 23/279 (8%)
Query: 6 IEKLCKAGNVSAAVRLLQSLR----DKNIFLPNAYNCVLVASAETNDIDLSFQILKDL-- 59
+ LCK G++ A LL + + N+ + Y+ V+ + + D + + ++
Sbjct: 232 VNGLCKRGDIDLAFNLLNKMEAAKIEANVVI---YSTVIDSLCKYRHEDDALNLFTEMEN 288
Query: 60 ------LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113
+++ +L S C N+ R D ++LL ++++ +++ N +I AF
Sbjct: 289 KGVRPNVITYSSLIS-CLCNYER----WSDASRLL---SDMIERKINPNVVTFNALIDAF 340
Query: 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDF 173
K ++ +A ++D + PD+ TY+ +++ R+++ + F M P+
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 400
Query: 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFND 233
++YNTL+N K +R+D + FREM + G+ + +TYT LI F + + + + +F
Sbjct: 401 VTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQ 460
Query: 234 MKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
M + P+I Y +L+D L K GK++ AM +FE + S
Sbjct: 461 MVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRS 499
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 105/201 (52%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+T + + ++ + ++ +VQ +++ ++ K I+ A + + ++
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 252
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K + +++ Y+ V+D L + +D LN F M+ GV P+ I+Y++L++ L R
Sbjct: 253 AAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWS 312
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+M E I P+++T+ ALID+F + G + E+ +L+++M ++ I P I+ Y SLI
Sbjct: 313 DASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 372
Query: 251 DNLKKMGKVDLAMTIFEEMNS 271
+ ++D A +FE M S
Sbjct: 373 NGFCMHDRLDEAKHMFELMIS 393
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 116/235 (49%)
Query: 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94
YN ++ + I L+ +L ++ S ++ + + + ++++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 95 VQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRV 154
V++ I +I + +A+ + D + C+P+L+TY +V++ L + G +
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 241
Query: 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTAL 214
+ N M+ A + + + Y+T++++L K R D L F EM G++P+++TY++L
Sbjct: 242 DLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSL 301
Query: 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
I ++ RL +DM +++I P++ + +LID K GK+ A +++EM
Sbjct: 302 ISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 3/204 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I C + A + + + K+ F PN YN ++ + ID ++ +++
Sbjct: 372 INGFCMHDRLDEAKHMFELMISKDCF-PNVVTYNTLINGFCKAKRIDEGVELFREMSQRG 430
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
++ YT F DC + +++V +I+ N ++ K+ ++EKA+
Sbjct: 431 LVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAM 490
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
++F++++ K +P + TYNI+++ + + G+V D + F S+ GV PD I YNT+++
Sbjct: 491 VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGF 550
Query: 184 RKIRRLDLCLIYFREMGESGIKPD 207
+ + FR+M E G PD
Sbjct: 551 CRKGLKEEADALFRKMREDGPLPD 574
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/268 (21%), Positives = 127/268 (47%), Gaps = 7/268 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I LC S A RLL + ++ I PN +N ++ A + + + ++ +++
Sbjct: 302 ISCLCNYERWSDASRLLSDMIERKIN-PNVVTFNALIDAFVKEGKLVEAEKLYDEMI--K 358
Query: 64 RTLSSD--CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
R++ D Y++ F M D + E ++ +++ N +I F K+++I++
Sbjct: 359 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDE 418
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
+ +F + + +TY ++ + ++ F M GV P+ ++YNTLL+
Sbjct: 419 GVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLD 478
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
L K +L+ ++ F + S ++P + TY +I+ + G +E+ LF + + ++P
Sbjct: 479 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 538
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ +Y ++I + G + A +F +M
Sbjct: 539 DVIIYNTMISGFCRKGLKEEADALFRKM 566
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 91/178 (51%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
E++ ++ ++ N +I F + QI AL + + L +P ++T + +L+
Sbjct: 109 EKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHG 168
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
R++D + M E G PD I++ TL++ L + + M + G +P+L+TY
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+++ + G+I+ + L N M+ +I ++ +Y ++ID+L K D A+ +F EM
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 286
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 88/171 (51%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SI N+++ A AK ++ + + + + ++ L +L TYNI+++ R +++ L
Sbjct: 84 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
M + G P ++ ++LLN +R+ + +M E G +PD +T+T LI
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
E++ L + M Q+ +P++ Y +++ L K G +DLA + +M ++
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 254
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 6/182 (3%)
Query: 66 LSSDCYTNFA------RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
+S DC+ N F + + E+ Q + + +I F ++R
Sbjct: 392 ISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDC 451
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
+ A ++F + P+++TYN +LD L + G++ + F ++ + + P +YN +
Sbjct: 452 DNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 511
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+ + K +++ F + G+KPD++ Y +I F R G EE+ LF M++
Sbjct: 512 IEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGP 571
Query: 240 RP 241
P
Sbjct: 572 LP 573
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
+++D + F M ++ +P +N LL+ + K+++ DL + +M GI +L TY
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
LI+ F R I +L L M + PSI SL++ ++ A+ + ++M
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 76/155 (49%)
Query: 115 KSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI 174
S +++ A+ +F + + P + +N +L + ++ + + +++ M+ G+ +
Sbjct: 62 HSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLY 121
Query: 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234
+YN L+N + ++ L L +M + G +P ++T ++L++ + I +++ L + M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 235 KQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ RP + +LI L K A+ + + M
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 98.6 bits (244), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 119/267 (44%), Gaps = 1/267 (0%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFL-PNAYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I LCK G S A+ L +K + N +L E +D +F+I K++L
Sbjct: 490 ISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGC 549
Query: 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
+ Y + +F++E+V+ + +I ++E+A+
Sbjct: 550 VMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQ 609
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+D K PD+ TY++++D + R + F M V P+ + YN L+
Sbjct: 610 FWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYC 669
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
+ RL + L +M GI P+ TYT+LI +EE+ LF +M+ + + P+++
Sbjct: 670 RSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVF 729
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEEMNS 271
Y +LID K+G++ + EM+S
Sbjct: 730 HYTALIDGYGKLGQMVKVECLLREMHS 756
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 121/270 (44%), Gaps = 5/270 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLV 61
N + LC+AG + A R+ + + + + +YN ++ +D +F L +++
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMV- 580
Query: 62 SSRTLSSDCYTN--FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
R L D YT + + + F ++ + + + +I K+ +
Sbjct: 581 -KRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERT 639
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
E+ FD + +P+ + YN ++ R GR++ L MK G+ P+ +Y +L
Sbjct: 640 EEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSL 699
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+ + I R++ + F EM G++P++ YTALID +G+ G + + L +M + +
Sbjct: 700 IKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNV 759
Query: 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
P+ Y +I + G V A + EM
Sbjct: 760 HPNKITYTVMIGGYARDGNVTEASRLLNEM 789
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 94/178 (52%), Gaps = 1/178 (0%)
Query: 94 VVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153
V + SP+ + + I AF K ++E+A+ +F ++ P+++T+N V+D LG GR
Sbjct: 265 VCKGVSPD-VYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGR 323
Query: 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTA 213
++ M E G+ P I+Y+ L+ L + +R+ +EM + G P+++ Y
Sbjct: 324 YDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNN 383
Query: 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
LIDSF G++ +++ + + M + + + Y +LI K G+ D A + +EM S
Sbjct: 384 LIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLS 441
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/263 (19%), Positives = 99/263 (37%), Gaps = 38/263 (14%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I CK G V AV+L + + + PN +N V+ D +F
Sbjct: 280 INAFCKGGKVEEAVKLFSKMEEAGV-APNVVTFNTVIDGLGMCGRYDEAF---------- 328
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+F E++V+ ++I + ++ ++++I A
Sbjct: 329 -------------------------MFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAY 363
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ + P++I YN ++D G +N + M G+ +YNTL+
Sbjct: 364 FVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 423
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K + D +EM G + ++T++I + +LR +M + + P
Sbjct: 424 CKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGG 483
Query: 244 YVYRSLIDNLKKMGKVDLAMTIF 266
+ +LI L K GK A+ ++
Sbjct: 484 GLLTTLISGLCKHGKHSKALELW 506
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
L L F + G+ P T L+ S R ++ F D+ + + P +Y++ + I
Sbjct: 222 LALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-DVVCKGVSPDVYLFTTAI 280
Query: 251 DNLKKMGKVDLAMTIFEEMNSS 272
+ K GKV+ A+ +F +M +
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEA 302
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 98.6 bits (244), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 96/187 (51%)
Query: 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYN 142
+C + + + E+ + + + N +I F + +++EKAL + + +KG C L+T+
Sbjct: 157 ECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWG 216
Query: 143 IVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202
I++D + G++++ + MK G+ D + Y +L+ LD F E+ E
Sbjct: 217 ILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLER 276
Query: 203 GIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262
G P +TY LI F + G ++E+ +F M ++ +RP++Y Y LID L +GK A
Sbjct: 277 GDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336
Query: 263 MTIFEEM 269
+ + M
Sbjct: 337 LQLLNLM 343
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 3/270 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I KLCK G V+ AV +++ ++ + N YN +L D+D + ++L +L S
Sbjct: 359 INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSS 418
Query: 65 TLSSD--CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA 122
D Y + Q L + +V+ + N ++ + K+ + KA
Sbjct: 419 YTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKA 478
Query: 123 LLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182
+ ++ I K + TY ++D + G +N M+ + + P YN LL++
Sbjct: 479 MELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSS 538
Query: 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242
L K LD F EM PD++++ +ID + G+I+ + L M + + P
Sbjct: 539 LCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPD 598
Query: 243 IYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
++ Y LI+ K+G +D A++ F++M S
Sbjct: 599 LFTYSKLINRFLKLGYLDEAISFFDKMVDS 628
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 128/274 (46%), Gaps = 5/274 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
++ LC+ AV LL+ +R +N +P+ +YN V+ E +++ + ++ ++ S
Sbjct: 149 LKGLCRNLECGKAVSLLREMR-RNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSG 207
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ S + AF + + F++E+ + ++V +I F ++++
Sbjct: 208 CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGK 267
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+FD + P ITYN ++ ++G++ + F M E GV P+ +Y L++ L
Sbjct: 268 ALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGL 327
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ + L M E +P+ +TY +I+ + G + +++ + MK+++ RP
Sbjct: 328 CGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDN 387
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEM--NSSLSD 275
Y L+ L G +D A + M +SS +D
Sbjct: 388 ITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTD 421
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 5/208 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDK-NIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61
N I LCK + A+ + L +K N +L ++ + D++ + ++ K +
Sbjct: 428 NALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISD 487
Query: 62 SSRTLSSDCYTNFARAFIMTD--DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
S +SD YT F T + + L+ V ++ S+ N ++ + K +
Sbjct: 488 SKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQP--SVFDYNCLLSSLCKEGSL 545
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
++A +F+ ++ PD++++NI++D + G + + M AG+ PD +Y+ L
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKL 605
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPD 207
+N K+ LD + +F +M +SG +PD
Sbjct: 606 INRFLKLGYLDEAISFFDKMVDSGFEPD 633
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 121/245 (49%), Gaps = 7/245 (2%)
Query: 31 FLPN--AYNCVLVASAETN-DIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQL 87
F+P +YN VL A+ + +I + + K++L S + + Y R F +
Sbjct: 165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224
Query: 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA--LLIFDHIKGLKCKPDLITYNIVL 145
L +++ +++ N +I + K R+I+ LL +KGL+ P+LI+YN+V+
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLE--PNLISYNVVI 282
Query: 146 DILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIK 205
+ L R GR+ ++ M G D ++YNTL+ K L+ EM G+
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT 342
Query: 206 PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTI 265
P ++TYT+LI S + GN+ ++ + M+ + + P+ Y +L+D + G ++ A +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 266 FEEMN 270
EMN
Sbjct: 403 LREMN 407
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 123/259 (47%), Gaps = 3/259 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ CK GN A+ ++ + ++ P+ Y ++ + + +++ + + L +
Sbjct: 314 NTLIKGYCKEGNFHQAL-VMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
V + YT F + + E+ S++ N +I + ++E
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
A+ + + +K PD+++Y+ VL R V++ L M E G+ PD I+Y++L+
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ RR + EM G+ PD TYTALI+++ G++E++L+L N+M ++ +
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552
Query: 241 PSIYVYRSLIDNLKKMGKV 259
P + Y LI+ L K +
Sbjct: 553 PDVVTYSVLINGLNKQSRT 571
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 129/270 (47%), Gaps = 5/270 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDI-DLSFQILKDL 59
N I+ CK + +LL+S+ K + PN +YN V+ + ++SF +L ++
Sbjct: 244 NTLIDGYCKLRKIDDGFKLLRSMALKGL-EPNLISYNVVINGLCREGRMKEVSF-VLTEM 301
Query: 60 LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
+L Y + + + Q L+ E+++ S+I +I + K+ +
Sbjct: 302 NRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
+A+ D ++ P+ TY ++D + G +N+ M + G P ++YN L
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+N +++ + +M E G+ PD+++Y+ ++ F R+ +++E+LR+ +M ++ I
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+P Y SLI + + A ++EEM
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEM 511
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 117/249 (46%), Gaps = 3/249 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I +CKAGN++ A+ L +R + + PN Y ++ ++ ++ ++++L+++ +
Sbjct: 352 IHSMCKAGNMNRAMEFLDQMRVRGL-CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG 410
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ S Y +T + +E++ + ++ + ++ F +S +++AL
Sbjct: 411 FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ + KPD ITY+ ++ R + + + M G+ PD +Y L+N
Sbjct: 471 RVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAY 530
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
L+ L EM E G+ PD++TY+ LI+ + E+ RL + ++ PS
Sbjct: 531 CMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSD 590
Query: 244 YVYRSLIDN 252
Y +LI+N
Sbjct: 591 VTYHTLIEN 599
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 84/167 (50%), Gaps = 1/167 (0%)
Query: 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR-VNDMLNEFAS 163
V + ++ ++++ I+KAL I + P +++YN VLD R R ++ N F
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKE 195
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
M E+ V P+ +YN L+ +D+ L F +M G P+++TY LID + +
Sbjct: 196 MLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK 255
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
I++ +L M + + P++ Y +I+ L + G++ + EMN
Sbjct: 256 IDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/276 (17%), Positives = 107/276 (38%), Gaps = 53/276 (19%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I C G + A+ +L+ +++K + P+ +Y+ VL + D+D + ++ ++++
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGLS-PDVVSYSTVLSGFCRSYDVDEALRVKREMV 477
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ Y++ + F + EE++++ P +I A+ +E
Sbjct: 478 EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLE 537
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVND------------------------ 156
KAL + + + PD++TY+++++ L + R +
Sbjct: 538 KALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLI 597
Query: 157 ----------------------MLNE----FASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
M+ E F SM PD +YN +++ + +
Sbjct: 598 ENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIR 657
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226
++EM +SG +T AL+ + + G + E
Sbjct: 658 KAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNE 693
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/277 (23%), Positives = 130/277 (46%), Gaps = 17/277 (6%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETND--IDLSFQILKDLL 60
N I+ K G + + RLL + + PN C ++ A N I+ ++ I+ +
Sbjct: 428 NTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQ 487
Query: 61 VSSRTLSSDCYTNFARAFI-MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
+ A+A+ + CT + I ++ ++ I+ + + ++
Sbjct: 488 SYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKM 547
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVL-------DILGRVGRVNDMLNEFASMKEAGVVPD 172
E+AL F +K L P+L +N ++ D+ G VG V D++ EF GV PD
Sbjct: 548 EEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDG-VGEVVDLMEEF------GVKPD 600
Query: 173 FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFN 232
++++TL+N + + C + +M E GI PD+ ++ L + R G E++ ++ N
Sbjct: 601 VVTFSTLMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILN 660
Query: 233 DMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
M++ +RP++ +Y +I G++ AM ++++M
Sbjct: 661 QMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKM 697
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 44/259 (16%)
Query: 52 SFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIF 111
+ I L+ S YT A LL I +V + I+ N II
Sbjct: 338 AHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIIN 397
Query: 112 AFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG------------------- 152
A ++S +++A+ IF+ +K CKP T+N ++ G++G
Sbjct: 398 ASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQ 457
Query: 153 -----------------RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL-- 193
++ + N M+ GV PD +++NTL +I C
Sbjct: 458 PNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG--STCTAE 515
Query: 194 -IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID- 251
+ M + +KP++ T +++ + G +EE+LR F MK+ + P+++V+ SLI
Sbjct: 516 DMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKG 575
Query: 252 --NLKKMGKVDLAMTIFEE 268
N+ M V + + EE
Sbjct: 576 FLNINDMDGVGEVVDLMEE 594
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 1/153 (0%)
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
++A IF+ + KP LITY ++ L R + +L+ + +++ G+ PD I +N +
Sbjct: 336 QEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAI 395
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM-KQQQ 238
+N + LD + F +M ESG KP T+ LI +G+ G +EES RL + M + +
Sbjct: 396 INASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEM 455
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
++P+ L+ K++ A I +M S
Sbjct: 456 LQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQS 488
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 67/118 (56%)
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
GR + + F ++ E G P I+Y TL+ L + + L ++ ++G+KPD + +
Sbjct: 333 GRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILF 392
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
A+I++ +GN+++++++F MK+ +P+ + +LI K+GK++ + + + M
Sbjct: 393 NAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMM 450
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLF 231
D S L+N L + R F + E G KP L+TYT L+ + R + L L
Sbjct: 318 DVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLI 377
Query: 232 NDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ +++ ++P ++ ++I+ + G +D AM IFE+M S
Sbjct: 378 SKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKES 418
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 132/304 (43%), Gaps = 57/304 (18%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I KA VS A L +++ + LPN Y+ ++ + ++ + QI + + S
Sbjct: 560 IHAYLKAKKVSYANELFETMLSEGC-LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK 618
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
D Y F DD ++ +++ ++ F KS ++E+A
Sbjct: 619 DVPDVDMY------FKQYDDNSE-------------RPNVVTYGALLDGFCKSHRVEEAR 659
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ D + C+P+ I Y+ ++D L +VG++++ M E G +Y++L++
Sbjct: 660 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRY 719
Query: 184 RKIRRLDLC----------------LIY-------------------FREMGESGIKPDL 208
K++R DL +IY + M E G +P++
Sbjct: 720 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV 779
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268
+TYTA+ID FG G IE L L M + + P+ YR LID+ K G +D+A + EE
Sbjct: 780 VTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEE 839
Query: 269 MNSS 272
M +
Sbjct: 840 MKQT 843
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/292 (21%), Positives = 130/292 (44%), Gaps = 25/292 (8%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETND------IDLSFQ 54
N + C +G+ S A +LL+ + K +P YN ++ + D +DL+ +
Sbjct: 376 NSLVHAYCTSGDHSYAYKLLKKMV-KCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEK 434
Query: 55 ILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114
++L + L+ ++F R + I E++ ++++
Sbjct: 435 AYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLC 494
Query: 115 KSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI 174
+ ++E A L+F+ +K D+ TY I++D + G + F M+E G P+ +
Sbjct: 495 NASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVV 554
Query: 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFN-- 232
+Y L++ K +++ F M G P+++TY+ALID + G +E++ ++F
Sbjct: 555 TYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614
Query: 233 ---------DMKQQQI-----RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
DM +Q RP++ Y +L+D K +V+ A + + M+
Sbjct: 615 CGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMS 666
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Query: 104 IVVNRI-IFAFAK----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDML 158
+V+N+I + +F + + + EKA + + G PD TY+ VL+ L ++
Sbjct: 444 VVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAF 503
Query: 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF 218
F MK G+V D +Y ++++ K ++ +F EM E G P+++TYTALI ++
Sbjct: 504 LLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAY 563
Query: 219 GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ + + LF M + P+I Y +LID K G+V+ A IFE M S
Sbjct: 564 LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGS 617
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 94/181 (51%), Gaps = 2/181 (1%)
Query: 91 IEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150
+ ++++ + ++++ +I K + ++A + ++ C+P+++TY ++D G
Sbjct: 732 LSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGM 791
Query: 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210
+G++ L M GV P++++Y L+++ K LD+ EM ++
Sbjct: 792 IGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAG 851
Query: 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
Y +I+ F + ESL L +++ Q P + VYR LIDNL K ++++A+ + EE+
Sbjct: 852 YRKVIEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVA 909
Query: 271 S 271
+
Sbjct: 910 T 910
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/310 (20%), Positives = 132/310 (42%), Gaps = 47/310 (15%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N + K C+ G+ S A+ L L+D F P+ YNC++ A + + +D + I +++
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFR-FRPSRSTYNCLIQAFLKADRLDSASLIHREMS 262
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+++ + FA + + L +E + P+++ ++I ++ E
Sbjct: 263 LANLRMDGFTLRCFAYSLCKVGKWREALTLVE--TENFVPDTVFY-TKLISGLCEASLFE 319
Query: 121 KALLIFDHIKGLKCKPDLITYNIVL------DILGRVGRV----------------NDML 158
+A+ + ++ C P+++TY+ +L LGR RV N ++
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLV 379
Query: 159 NEFAS-------------MKEAGVVPDFISYNTLLNNLRKIRR------LDLCLIYFREM 199
+ + + M + G +P ++ YN L+ ++ + LDL + EM
Sbjct: 380 HAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEM 439
Query: 200 GESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKV 259
+G+ + + ++ G E++ + +M Q P Y +++ L K+
Sbjct: 440 LAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKM 499
Query: 260 DLAMTIFEEM 269
+LA +FEEM
Sbjct: 500 ELAFLLFEEM 509
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 17/236 (7%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRT 65
I+ LCK G A +L+Q + +K PN V+ +A + + +I L + R
Sbjct: 751 IDGLCKVGKTDEAYKLMQMMEEKGC-QPN----VVTYTAMIDGFGMIGKIETCLELLERM 805
Query: 66 LSSDCYTNFARAFIMTDDCTQ------LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
S N+ ++ D C + +EE+ Q P ++I F K +
Sbjct: 806 GSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EF 863
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN---DMLNEFASMKEAGVVPDFISY 176
++L + D I P L Y +++D L + R+ +L E A+ A +V +Y
Sbjct: 864 IESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFS-ATLVDYSSTY 922
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFN 232
N+L+ +L +++ F EM + G+ P++ ++ +LI R I E+L L +
Sbjct: 923 NSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLLD 978
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/303 (21%), Positives = 125/303 (41%), Gaps = 46/303 (15%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA---YNCVLVASAETNDIDLSFQILKDLLVS 62
I+ LCK G + A + + + P Y+ ++ + DL+ ++L +L +
Sbjct: 681 IDGLCKVGKLDEAQEVKTEMSEHG--FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLEN 738
Query: 63 SRTLSSDCYTNFARAFIM---TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
S + YT TD+ +L+ +EE + P +++ +I F +I
Sbjct: 739 SCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEE--KGCQP-NVVTYTAMIDGFGMIGKI 795
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA------------ 167
E L + + + P+ +TY +++D + G ++ N MK+
Sbjct: 796 ETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKV 855
Query: 168 --GVVPDFIS-------------------YNTLLNNLRKIRRLDLCLIYFREMGE-SGIK 205
G +FI Y L++NL K +RL++ L E+ S
Sbjct: 856 IEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATL 915
Query: 206 PDLL-TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
D TY +LI+S +E + +LF++M ++ + P + + SLI L + K+ A+
Sbjct: 916 VDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALL 975
Query: 265 IFE 267
+ +
Sbjct: 976 LLD 978
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Query: 142 NIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201
N+++ R G + L E +K+ P +YN L+ K RLD + REM
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263
Query: 202 SGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDL 261
+ ++ D T S + G E+L L ++ + P Y LI L + +
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFEE 320
Query: 262 AMTIFEEMNSS 272
AM M ++
Sbjct: 321 AMDFLNRMRAT 331
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 124/269 (46%), Gaps = 2/269 (0%)
Query: 3 NGYIEKLCK-AGNVSAAVRLLQSL-RDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLL 60
N YIE L K GN A+ + Q + RD+ YN ++ + + +S+++ ++
Sbjct: 232 NAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMR 291
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ YT AF C + E++ + + V N ++ +++++
Sbjct: 292 SHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPY 351
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
A IF ++ + C+PD +YNI++D GR G +D F MK G+ P S+ LL
Sbjct: 352 GAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLL 411
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ K R + C +EM E+G++PD ++++ +GR G + ++ +M+
Sbjct: 412 SAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCT 471
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
I Y LI+ K G ++ +F E+
Sbjct: 472 ADISTYNILINIYGKAGFLERIEELFVEL 500
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166
N +I + K+ + + ++ ++ +CKP++ TY +++ R G F ++E
Sbjct: 268 NLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQE 327
Query: 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226
G+ PD YN L+ + + F M G +PD +Y ++D++GR G +
Sbjct: 328 DGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSD 387
Query: 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
+ +F +MK+ I P++ + L+ K V I +EM+
Sbjct: 388 AEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMS 431
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 75/166 (45%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
++ A++K+R + K I + +PD N +L++ GR+G+ M A M+
Sbjct: 410 LLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGP 469
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
D +YN L+N K L+ F E+ E +PD++T+T+ I ++ R + L
Sbjct: 470 CTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCL 529
Query: 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274
+F +M P + L+ +V+ ++ M+ ++
Sbjct: 530 EVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHKGVT 575
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 101/238 (42%), Gaps = 7/238 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAET---NDIDLSFQILKD 58
N +E +AG A + ++ A YN ++ A +D + F+ +K
Sbjct: 338 NALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKR 397
Query: 59 LLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
L ++ T+ S + A+ D T+ ++E+ + V+N ++ + + Q
Sbjct: 398 LGIAP-TMKS--HMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRLGQ 454
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
K I ++ C D+ TYNI+++I G+ G + + F +KE PD +++ +
Sbjct: 455 FTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTS 514
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
+ + + CL F EM +SG PD T L+ + +E+ + M +
Sbjct: 515 RIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVTSVLRTMHK 572
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 135 KPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLI 194
+PD+I +N+++D G+ + + + + + E+ VP +Y L+ ++ +
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211
Query: 195 YFREMGESGIKPDLL---TYTALIDSF-GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
EM + P + Y A I+ R GN EE++ +F MK+ + +P+ Y +I
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 271
Query: 251 DNLKKMGKVDLAMTIFEEMNS 271
+ K K ++ ++ EM S
Sbjct: 272 NLYGKASKSYMSWKLYCEMRS 292
Score = 32.7 bits (73), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 168 GVVPD-FISYNTLLN---NLRKIRRLD----LCLIYFREMGESGIKPDLLTYTALIDSFG 219
G +P S++ L+N LR ++ D +C R+ S +PD++ + LID++G
Sbjct: 110 GALPSTHASWDDLINVSVQLRLNKKWDSIILVCEWILRK---SSFQPDVICFNLLIDAYG 166
Query: 220 RTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+ +E+ L+ + + + P+ Y LI G ++ A + EM +
Sbjct: 167 QKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLVEMQN 218
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 97.8 bits (242), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 130/282 (46%), Gaps = 23/282 (8%)
Query: 3 NGYIEKLCKAGNVSAAVR----LLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKD 58
N + LCKAG+V A+ +LQ D +++ YN V+ + ++ + ++L
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY---TYNSVISGLCKLGEVKEAVEVLDQ 355
Query: 59 LLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS--------PESIIVVNRII 110
++ + ++ Y + +EE ++A P+ + N +I
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQ-------VEEATELARVLTSKGILPD-VCTFNSLI 407
Query: 111 FAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV 170
+R A+ +F+ ++ C+PD TYN+++D L G++++ LN M+ +G
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 171 PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRL 230
I+YNTL++ K + F EM G+ + +TY LID ++ +E++ +L
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQL 527
Query: 231 FNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ M + +P Y Y SL+ + + G + A I + M S+
Sbjct: 528 MDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSN 569
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 112/269 (41%), Gaps = 37/269 (13%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAY--NCVLVASAETNDIDLSFQILKDLL 60
N + CK G V A+ +Q + +++ F P+ Y N ++ + + + +I+ +L
Sbjct: 263 NVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVML 322
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
D YT N +I K +++
Sbjct: 323 --QEGYDPDVYT---------------------------------YNSVISGLCKLGEVK 347
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A+ + D + C P+ +TYN ++ L + +V + + G++PD ++N+L+
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
L R + + F EM G +PD TY LIDS G ++E+L + M+
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
S+ Y +LID K K A IF+EM
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEM 496
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 123/263 (46%), Gaps = 5/263 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLL 60
N I LCK G V AV +L + ++ PN YN ++ + N ++ + ++ + +L
Sbjct: 334 NSVISGLCKLGEVKEAVEVLDQMITRDCS-PNTVTYNTLISTLCKENQVEEATELAR-VL 391
Query: 61 VSSRTLSSDC-YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
S L C + + + +T + + EE+ N +I + ++
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
++AL + ++ C +ITYN ++D + + + F M+ GV + ++YNTL
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
++ L K RR++ +M G KPD TY +L+ F R G+I+++ + M
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571
Query: 240 RPSIYVYRSLIDNLKKMGKVDLA 262
P I Y +LI L K G+V++A
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVA 594
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 117/269 (43%), Gaps = 3/269 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I LCK V A L + L K I LP+ +N ++ T + ++ ++ +++
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGI-LPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
Y + + L ++++ S+I N +I F K+ +
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTR 487
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A IFD ++ + +TYN ++D L + RV D M G PD +YN+LL
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLL 547
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ + + + M +G +PD++TY LI + G +E + +L ++ + I
Sbjct: 548 THFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIN 607
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ + Y +I L + K A+ +F EM
Sbjct: 608 LTPHAYNPVIQGLFRKRKTTEAINLFREM 636
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 1/239 (0%)
Query: 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEE 93
+ +N ++ A + + + +L+D+ +T + +I D L E+
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249
Query: 94 VVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK-PDLITYNIVLDILGRVG 152
+V+ S + VN I+ F K ++E AL + PD T+N +++ L + G
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
V + M + G PD +YN++++ L K+ + + +M P+ +TY
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
LI + + +EE+ L + + I P + + SLI L +AM +FEEM S
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 103/248 (41%), Gaps = 4/248 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ LC N A+ L + +R K P+ YN ++ + +D + +LK +
Sbjct: 404 NSLIQGLCLTRNHRVAMELFEEMRSKGC-EPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+S S Y F + + +E+ + + N +I KSR++E
Sbjct: 463 LSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVE 522
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
A + D + KPD TYN +L R G + + +M G PD ++Y TL+
Sbjct: 523 DAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM-KQQQI 239
+ L K R+++ R + GI Y +I R E++ LF +M +Q +
Sbjct: 583 SGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEA 642
Query: 240 RPSIYVYR 247
P YR
Sbjct: 643 PPDAVSYR 650
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/293 (19%), Positives = 120/293 (40%), Gaps = 39/293 (13%)
Query: 16 SAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTN 73
SAA+RL K F P Y +L+ + D +IL+D+ S + + +
Sbjct: 64 SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123
Query: 74 FARAFIMTDDCTQLLIFIEEVV-QIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132
++ + ++L ++ ++ + NR++ ++ + +
Sbjct: 124 LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVW 183
Query: 133 KCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDF------------------- 173
KPD+ T+N+++ L R ++ + M G+VPD
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243
Query: 174 ----------------ISYNTLLNNLRKIRRLDLCLIYFREMG-ESGIKPDLLTYTALID 216
+S N +++ K R++ L + +EM + G PD T+ L++
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303
Query: 217 SFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ G+++ ++ + + M Q+ P +Y Y S+I L K+G+V A+ + ++M
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQM 356
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 105/201 (52%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+T + + ++ + ++ +VQ +++ ++ K + AL + + ++
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKME 252
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K + D++ +N ++D L + V+D LN F M+ G+ P+ ++Y++L++ L R
Sbjct: 253 AAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWS 312
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+M E I P+L+T+ ALID+F + G E+ +L++DM ++ I P I+ Y SL+
Sbjct: 313 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLV 372
Query: 251 DNLKKMGKVDLAMTIFEEMNS 271
+ ++D A +FE M S
Sbjct: 373 NGFCMHDRLDKAKQMFEFMVS 393
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 118/235 (50%)
Query: 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94
YN ++ + I L+ +L ++ S ++ + + + ++++
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 95 VQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRV 154
V++ I +I + +A+ + D + C+P+L+TY +V++ L + G
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTAL 214
+ LN M+ A + D + +NT++++L K R +D L F+EM GI+P+++TY++L
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSL 301
Query: 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
I G ++ +L +DM +++I P++ + +LID K GK A ++++M
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDM 356
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 128/276 (46%), Gaps = 17/276 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDL----- 59
+ LCK G+ A+ LL + I +N ++ + + +D + + K++
Sbjct: 232 VNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGI 291
Query: 60 ---LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
+V+ +L S C ++ R D +QLL ++++ +++ N +I AF K
Sbjct: 292 RPNVVTYSSLIS-CLCSYGR----WSDASQLL---SDMIEKKINPNLVTFNALIDAFVKE 343
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
+ +A ++D + PD+ TYN +++ R++ F M PD ++Y
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
NTL+ K +R++ FREM G+ D +TYT LI G+ + + ++F M
Sbjct: 404 NTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 463
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ P I Y L+D L GK++ A+ +F+ M S
Sbjct: 464 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 499
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 7/252 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I LC G S A +LL + +K I PN +N ++ A + + ++ D++
Sbjct: 302 ISCLCSYGRWSDASQLLSDMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLYDDMI--K 358
Query: 64 RTLSSDCYT--NFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
R++ D +T + F M D + E +V ++ N +I F KS+++E
Sbjct: 359 RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVED 418
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
+F + D +TY ++ L G ++ F M GV PD ++Y+ LL+
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
L +L+ L F M +S IK D+ YT +I+ + G +++ LF + + ++P
Sbjct: 479 GLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 538
Query: 242 SIYVYRSLIDNL 253
++ Y ++I L
Sbjct: 539 NVVTYNTMISGL 550
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 113/238 (47%), Gaps = 7/238 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N + C + A ++ + + K+ F P+ YN ++ ++ ++ ++ +++
Sbjct: 369 NSLVNGFCMHDRLDKAKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREM- 426
Query: 61 VSSRTLSSDC--YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
S R L D YT + DC +++V P I+ + ++ + +
Sbjct: 427 -SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 485
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
+EKAL +FD+++ + K D+ Y +++ + + G+V+D + F S+ GV P+ ++YNT
Sbjct: 486 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 545
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
+++ L R L ++M E G P+ TY LI + R G+ S L +M+
Sbjct: 546 MISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 92/180 (51%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
E++ ++ + N +I F + QI AL + + L +P ++T + +L+
Sbjct: 109 EKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHG 168
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
R++D + M E G PD I++ TL++ L + + M + G +P+L+TY
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+++ + G+ + +L L N M+ +I + ++ ++ID+L K VD A+ +F+EM +
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Score = 75.1 bits (183), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 89/171 (52%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SI+ N+++ A AK ++ + + + + ++ L+ L TYNI+++ R +++ L
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
M + G P ++ ++LLN +R+ + +M E G +PD +T+T LI
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
E++ L + M Q+ +P++ Y +++ L K G DLA+ + +M ++
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAA 254
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 75/152 (49%)
Query: 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
+++ A+ +F + + P ++ +N +L + ++ + + +++ M+ +V +YN
Sbjct: 65 KLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYN 124
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
L+N + ++ L L +M + G +P ++T ++L++ + I +++ L + M +
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
RP + +LI L K A+ + + M
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 104/201 (51%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+T + + ++ + ++ +VQ +++ ++ K I+ A + + ++
Sbjct: 118 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKME 177
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K + D++ +N ++D L + V+D LN F M+ G+ P+ ++Y++L++ L R
Sbjct: 178 AAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWS 237
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+M E I P+L+T+ ALID+F + G E+ +L +DM ++ I P I+ Y SLI
Sbjct: 238 DASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLI 297
Query: 251 DNLKKMGKVDLAMTIFEEMNS 271
+ ++D A +FE M S
Sbjct: 298 NGFCMHDRLDKAKQMFEFMVS 318
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 99/180 (55%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
++++V++ I +I + +A+ + D + C+P+L+TY +V++ L
Sbjct: 102 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 161
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
+ G ++ N M+ A + D + +NT++++L K R +D L F+EM GI+P+++
Sbjct: 162 KRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 221
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TY++LI G ++ +L +DM +++I P++ + +LID K GK A + ++M
Sbjct: 222 TYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDM 281
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 126/276 (45%), Gaps = 17/276 (6%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDL----- 59
+ LCK G++ A LL + I +N ++ + + +D + + K++
Sbjct: 157 VNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGI 216
Query: 60 ---LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
+V+ +L S C ++ R D +QLL ++++ +++ N +I AF K
Sbjct: 217 RPNVVTYSSLIS-CLCSYGRW----SDASQLL---SDMIEKKINPNLVTFNALIDAFVKE 268
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
+ +A + D + PD+ TYN +++ R++ F M PD +Y
Sbjct: 269 GKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTY 328
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
NTL+ K +R++ FREM G+ D +TYT LI G+ + + ++F M
Sbjct: 329 NTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 388
Query: 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+ P I Y L+D L GK++ A+ +F+ M S
Sbjct: 389 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKS 424
Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 112/237 (47%), Gaps = 5/237 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLV 61
N I C + A ++ + + K+ F + YN ++ ++ ++ ++ +++
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREM-- 351
Query: 62 SSRTLSSDC--YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
S R L D YT + DC +++V P I+ + ++ + ++
Sbjct: 352 SHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKL 411
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
EKAL +FD+++ + K D+ Y +++ + + G+V+D + F S+ GV P+ ++YNT+
Sbjct: 412 EKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTM 471
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
++ L R L ++M E G PD TY LI + R G+ S L +M+
Sbjct: 472 ISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 115/252 (45%), Gaps = 7/252 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I LC G S A +LL + +K I PN +N ++ A + + ++ D++
Sbjct: 227 ISCLCSYGRWSDASQLLSDMIEKKIN-PNLVTFNALIDAFVKEGKFVEAEKLHDDMI--K 283
Query: 64 RTLSSDCYT--NFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
R++ D +T + F M D + E +V + N +I F KS+++E
Sbjct: 284 RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVED 343
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
+F + D +TY ++ L G ++ F M GV PD ++Y+ LL+
Sbjct: 344 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 403
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
L +L+ L F M +S IK D+ YT +I+ + G +++ LF + + ++P
Sbjct: 404 GLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKP 463
Query: 242 SIYVYRSLIDNL 253
++ Y ++I L
Sbjct: 464 NVVTYNTMISGL 475
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 93/180 (51%)
Query: 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151
E++ ++ ++ N +I F + QI AL + + L +P ++T + +L+
Sbjct: 34 EKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHG 93
Query: 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211
R++D + M E G PD I++ TL++ L + + M + G +P+L+TY
Sbjct: 94 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 153
Query: 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
+++ + G+I+ + L N M+ +I + ++ ++ID+L K VD A+ +F+EM +
Sbjct: 154 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 213
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 88/171 (51%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SI N+++ A AK ++ + + + + ++ L +L TYNI+++ R +++ L
Sbjct: 9 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 68
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
M + G P ++ ++LLN +R+ + +M E G +PD +T+T LI
Sbjct: 69 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 128
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
E++ L + M Q+ +P++ Y +++ L K G +DLA + +M ++
Sbjct: 129 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 94/182 (51%), Gaps = 1/182 (0%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKS-RQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148
F + + +I P ++ +N +I A ++ ++ L IF + C PD TY ++ L
Sbjct: 143 FYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGL 202
Query: 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
R GR+++ F M E P ++Y +L+N L + +D + Y EM GI+P++
Sbjct: 203 CRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNV 262
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268
TY++L+D + G +++ LF M + RP++ Y +LI L K K+ A+ + +
Sbjct: 263 FTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDR 322
Query: 269 MN 270
MN
Sbjct: 323 MN 324
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 1/151 (0%)
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
+L +F +K C P Y VL IL ++N + +M+E G+ P S N L+
Sbjct: 105 SLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIK 164
Query: 182 NL-RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
L R +D L F EM + G PD TY LI R G I+E+ +LF +M ++
Sbjct: 165 ALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCA 224
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271
P++ Y SLI+ L VD AM EEM S
Sbjct: 225 PTVVTYTSLINGLCGSKNVDEAMRYLEEMKS 255
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 3/237 (1%)
Query: 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQ--LLIFIE 92
AY VL E N ++L+F+ K++ + +A D L IF+E
Sbjct: 123 AYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLE 182
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
+ P+S +I + +I++A +F + C P ++TY +++ L
Sbjct: 183 MPKRGCDPDSY-TYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSK 241
Query: 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212
V++ + MK G+ P+ +Y++L++ L K R + F M G +P+++TYT
Sbjct: 242 NVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYT 301
Query: 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
LI + I+E++ L + M Q ++P +Y +I + K A +EM
Sbjct: 302 TLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 4/147 (2%)
Query: 127 DHIKGLKCKPDLITYNIVLDIL---GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
D I +K + +++ +I+L I GRV R D L F MK+ P +Y T+L L
Sbjct: 72 DLIVRMKIENCVVSEDILLSICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAIL 131
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT-GNIEESLRLFNDMKQQQIRPS 242
+ +L+L +++ M E G+ P + + LI + R G ++ L++F +M ++ P
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPD 191
Query: 243 IYVYRSLIDNLKKMGKVDLAMTIFEEM 269
Y Y +LI L + G++D A +F EM
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEM 218
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 1/154 (0%)
Query: 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148
+F E V + +P +++ +I S+ +++A+ + +K +P++ TY+ ++D L
Sbjct: 214 LFTEMVEKDCAP-TVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGL 272
Query: 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
+ GR + F M G P+ ++Y TL+ L K +++ + M G+KPD
Sbjct: 273 CKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDA 332
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242
Y +I F E+ ++M I P+
Sbjct: 333 GLYGKVISGFCAISKFREAANFLDEMILGGITPN 366
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/276 (17%), Positives = 117/276 (42%), Gaps = 10/276 (3%)
Query: 3 NGYIEKLCKA-GNVSAAVRLLQSLRDKNIFLPNAYNCVLVASA--ETNDIDLSFQILKDL 59
N I+ LC+ G V A +++ + + P++Y + S ID + ++ ++
Sbjct: 160 NVLIKALCRNDGTVDAGLKIFLEMPKRGCD-PDSYTYGTLISGLCRFGRIDEAKKLFTEM 218
Query: 60 LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119
+ + YT+ + + + + ++EE+ ++ + ++ K +
Sbjct: 219 VEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRS 278
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
+A+ +F+ + C+P+++TY ++ L + ++ + + M G+ PD Y +
Sbjct: 279 LQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKV 338
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF-----GRTGNI-EESLRLFND 233
++ I + + EM GI P+ LT+ + + G N + L+
Sbjct: 339 ISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLYLS 398
Query: 234 MKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
M+ + I + SL+ L K G+ A+ + +E+
Sbjct: 399 MRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEI 434
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 133/271 (49%), Gaps = 7/271 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDLLVSSR 64
+ +LCK+GN + A+ L + + ++NI Y+ V+ + + D + + ++ +
Sbjct: 217 LNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGI 276
Query: 65 TLSSDCYTNFARAFI---MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
Y++ DD ++L E++ ++ + +I F K ++ +
Sbjct: 277 KADVVTYSSLIGGLCNDGKWDDGAKML---REMIGRNIIPDVVTFSALIDVFVKEGKLLE 333
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
A +++ + PD ITYN ++D + +++ F M G PD ++Y+ L+N
Sbjct: 334 AKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILIN 393
Query: 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241
+ K +R+D + FRE+ G+ P+ +TY L+ F ++G + + LF +M + + P
Sbjct: 394 SYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPP 453
Query: 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
S+ Y L+D L G+++ A+ IFE+M S
Sbjct: 454 SVVTYGILLDGLCDNGELNKALEIFEKMQKS 484
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 137/275 (49%), Gaps = 13/275 (4%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLVSSR 64
I+ LCK G+ A+ L + K I Y+ ++ D ++L++++ R
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI--GR 309
Query: 65 TLSSDCYTNFARAFIMTDDCTQLL----IFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ D T A + + +LL ++ E + + +P++I N +I F K +
Sbjct: 310 NIIPDVVTFSALIDVFVKE-GKLLEAKELYNEMITRGIAPDTI-TYNSLIDGFCKENCLH 367
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
+A +FD + C+PD++TY+I+++ + RV+D + F + G++P+ I+YNTL+
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ +L+ F+EM G+ P ++TY L+D G + ++L +F M++ ++
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMT 487
Query: 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275
I +Y +I + KVD A ++F SLSD
Sbjct: 488 LGIGIYNIIIHGMCNASKVDDAWSLF----CSLSD 518
Score = 91.7 bits (226), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 129/261 (49%), Gaps = 11/261 (4%)
Query: 15 VSAAVRLLQSL-RDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTN 73
V+ A+ L +S+ + + + P +N + A A T DL K + ++ + D YT
Sbjct: 51 VNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNG--IEHDMYT- 107
Query: 74 FARAFIMTDDC-TQLLIFIEEVV----QIASPESIIVVNRIIFAFAKSRQIEKALLIFDH 128
++ C + L+F V+ ++ I + ++ F ++ +A+ + D
Sbjct: 108 --MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDR 165
Query: 129 IKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR 188
+ +K +PDL+T + +++ L GRV++ L M E G PD ++Y +LN L K
Sbjct: 166 MVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGN 225
Query: 189 LDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRS 248
L L FR+M E IK ++ Y+ +IDS + G+ +++L LFN+M+ + I+ + Y S
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285
Query: 249 LIDNLKKMGKVDLAMTIFEEM 269
LI L GK D + EM
Sbjct: 286 LIGGLCNDGKWDDGAKMLREM 306
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 94/187 (50%)
Query: 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144
++ L+ I+ +V+ + ++ KS AL +F ++ K ++ Y+IV
Sbjct: 192 SEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIV 251
Query: 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI 204
+D L + G +D L+ F M+ G+ D ++Y++L+ L + D REM I
Sbjct: 252 IDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNI 311
Query: 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
PD++T++ALID F + G + E+ L+N+M + I P Y SLID K + A
Sbjct: 312 IPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQ 371
Query: 265 IFEEMNS 271
+F+ M S
Sbjct: 372 MFDLMVS 378
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 98/199 (49%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
++ F + ++ + ++ +V++ ++ V+ +I ++ +AL++ D +
Sbjct: 143 FSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMV 202
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
+PD +TY VL+ L + G L+ F M+E + + Y+ ++++L K D
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 262
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
L F EM GIK D++TY++LI G ++ ++ +M + I P + + +LI
Sbjct: 263 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 322
Query: 251 DNLKKMGKVDLAMTIFEEM 269
D K GK+ A ++ EM
Sbjct: 323 DVFVKEGKLLEAKELYNEM 341
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 72/147 (48%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
I N ++ F +S ++ A +F + P ++TY I+LD L G +N L F
Sbjct: 421 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEK 480
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
M+++ + YN +++ + ++D F + + G+KPD++TY +I + G+
Sbjct: 481 MQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS 540
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLI 250
+ E+ LF MK+ P + Y LI
Sbjct: 541 LSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 3/235 (1%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ CK + A ++ + K P+ Y+ ++ + + +D ++ +++
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKGC-EPDIVTYSILINSYCKAKRVDDGMRLFREIS 412
Query: 61 VSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
++ Y F + +E+V P S++ ++ + ++
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
KAL IF+ ++ + + YNI++ + +V+D + F S+ + GV PD ++YN ++
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMI 532
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235
L K L + FR+M E G PD TY LI + + S+ L +MK
Sbjct: 533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMK 587
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 3/180 (1%)
Query: 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162
I+ + +I ++ K+++++ + +F I P+ ITYN ++ + G++N F
Sbjct: 385 IVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQ 444
Query: 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222
M GV P ++Y LL+ L L+ L F +M +S + + Y +I
Sbjct: 445 EMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNAS 504
Query: 223 NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDF 282
++++ LF + + ++P + Y +I L K G + A +F +M D P DF
Sbjct: 505 KVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMK---EDGCTPDDF 561
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 40/204 (19%)
Query: 101 ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160
+ +I +NR F + + +LL + I K N ++DI +VND ++
Sbjct: 3 QRLIPLNRKASNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDI-----KVNDAIDL 57
Query: 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIK--------------- 205
F SM ++ +P I +N L + + + ++ DL L + + M +GI+
Sbjct: 58 FESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCR 117
Query: 206 --------------------PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYV 245
PD +T++ L++ F G + E++ L + M + + RP +
Sbjct: 118 KKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVT 177
Query: 246 YRSLIDNLKKMGKVDLAMTIFEEM 269
+LI+ L G+V A+ + + M
Sbjct: 178 VSTLINGLCLKGRVSEALVLIDRM 201
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 117/238 (49%), Gaps = 4/238 (1%)
Query: 33 PNA--YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIF 90
P+A Y+ ++ A + ++ D+L ++ S Y N A + + + L
Sbjct: 176 PDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEV 235
Query: 91 IEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150
+++ ++ N ++ A+ RQ KAL F+ +KG K +PD T+NI++ L +
Sbjct: 236 CKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSK 295
Query: 151 VGRVNDMLNEFASMKE--AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208
+G+ + L+ F SM+E A PD +++ ++++ ++ C F M G+KP++
Sbjct: 296 LGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNI 355
Query: 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
++Y AL+ ++ G +L + D+KQ I P + Y L+++ + + A +F
Sbjct: 356 VSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVF 413
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 76/141 (53%)
Query: 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162
++ I+ ++ +IE +F+ + KP++++YN ++ G L+
Sbjct: 320 VVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLG 379
Query: 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222
+K+ G++PD +SY LLN+ + R+ F M + KP+++TY ALID++G G
Sbjct: 380 DIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNG 439
Query: 223 NIEESLRLFNDMKQQQIRPSI 243
+ E++ +F M+Q I+P++
Sbjct: 440 FLAEAVEIFRQMEQDGIKPNV 460
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 87/171 (50%), Gaps = 12/171 (7%)
Query: 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164
+ N +I A+ +++A +F ++ CKPD TY+ +++ GR G+ +N M
Sbjct: 145 IYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDM 204
Query: 165 KEAGVVPDFISYNTLLN------NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF 218
A + P +YN L+N N R+ L++C ++M ++G+ PDL+T+ ++ ++
Sbjct: 205 LRAAIAPSRSTYNNLINACGSSGNWREA--LEVC----KKMTDNGVGPDLVTHNIVLSAY 258
Query: 219 GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
++L F MK ++RP + +I L K+G+ A+ +F M
Sbjct: 259 KSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSM 309
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
+I A ++ Q A+ + D + P TYN +++ G G + L M + G
Sbjct: 184 LINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNG 243
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
V PD +++N +L+ + R+ L YF M + ++PD T+ +I + G ++L
Sbjct: 244 VGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQAL 303
Query: 229 RLFNDMKQQ--QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
LFN M+++ + RP + + S++ G+++ +FE M
Sbjct: 304 DLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAM 346
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 123/299 (41%), Gaps = 38/299 (12%)
Query: 9 LCKAGNVSAAVRLLQSLRDKNIFL-PN--AYNCVLVASAETNDIDLSFQILKDLLVSSRT 65
L K G S A+ L S+R+K P+ + ++ + +I+ + + ++
Sbjct: 293 LSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLK 352
Query: 66 LSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLI 125
+ Y A+ + L + ++ Q ++ ++ ++ +SRQ KA +
Sbjct: 353 PNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEV 412
Query: 126 FDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS---------- 175
F ++ + KP+++TYN ++D G G + + + F M++ G+ P+ +S
Sbjct: 413 FLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSR 472
Query: 176 -------------------------YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210
YN+ + + L+ + ++ M + +K D +T
Sbjct: 473 SKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVT 532
Query: 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+T LI R E++ +M+ I + VY S++ K G+V A +IF +M
Sbjct: 533 FTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQM 591
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 35/206 (16%)
Query: 107 NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNI----------------------- 143
N I ++ + ++EKA+ ++ ++ K K D +T+ I
Sbjct: 499 NSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMED 558
Query: 144 ------------VLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191
VL + G+V + + F MK AG PD I+Y ++L+ +
Sbjct: 559 LSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGK 618
Query: 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251
F EM +GI+PD + +AL+ +F + G L + M++++I + V+ +
Sbjct: 619 ACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFS 678
Query: 252 NLKKMGKVDLAMTIFEEMNSSLSDLA 277
+ + A+ + + M+ L L+
Sbjct: 679 ACNTLQEWKRAIDLIQMMDPYLPSLS 704
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR----RLDLCLIYF 196
+ +++ L R G + +N F MK + ++ + N + N + ++ +D F
Sbjct: 110 FPVLIRELSRRGCIELCVNVFKWMK---IQKNYCARNDIYNMMIRLHARHNWVDQARGLF 166
Query: 197 REMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKM 256
EM + KPD TY ALI++ GR G ++ L +DM + I PS Y +LI+
Sbjct: 167 FEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSS 226
Query: 257 GKVDLAMTIFEEM 269
G A+ + ++M
Sbjct: 227 GNWREALEVCKKM 239
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 35/222 (15%)
Query: 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVL 145
+ + +++E+ ++ P + V + ++ A++K Q+ +A IF+ +K C+PD+I Y +L
Sbjct: 548 EAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSML 607
Query: 146 DILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIK 205
+ F M+ G+ PD I+ + L+ K + + M E I
Sbjct: 608 HAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIP 667
Query: 206 ------------------------------PDLLTYT-----ALIDSFGRTGNIEESLRL 230
P L + + ++ FG++G +E ++L
Sbjct: 668 FTGAVFFEIFSACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKL 727
Query: 231 FNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
F + + ++ Y L+++L +G + + E M+ +
Sbjct: 728 FYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGA 769
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/305 (18%), Positives = 121/305 (39%), Gaps = 36/305 (11%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVA-SAETNDIDLSFQILKDLLV 61
N I A + A+ L QS+R K + + +L++ S + + LK++
Sbjct: 499 NSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMED 558
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
S L+ + Y++ A+ T+ ++ +I ++ A+ S + K
Sbjct: 559 LSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGK 618
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN------DMLNE-------------FA 162
A +F ++ +PD I + ++ + G+ + D++ E F+
Sbjct: 619 ACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFS 678
Query: 163 ---SMKEAGVVPDFISY-------------NTLLNNLRKIRRLDLCLIYFREMGESGIKP 206
+++E D I N +L+ K +++ + F ++ SG+
Sbjct: 679 ACNTLQEWKRAIDLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGI 738
Query: 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
+L TY L++ GN + + + M I+PS +YR +I ++ ++ I
Sbjct: 739 NLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGERSAGIEFEPLIR 798
Query: 267 EEMNS 271
+++ S
Sbjct: 799 QKLES 803
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 98/184 (53%), Gaps = 1/184 (0%)
Query: 87 LLIFIEEVVQIAS-PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVL 145
++I++ E +Q+ P ++ N ++ F + Q+ AL + L +P ++T+ +L
Sbjct: 99 VVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158
Query: 146 DILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIK 205
+ R RV D L F M G P+ + YNT+++ L K +++D L M + GI
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIG 218
Query: 206 PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTI 265
PD++TY +LI +G ++ R+ + M +++I P ++ + +LID K G+V A
Sbjct: 219 PDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEF 278
Query: 266 FEEM 269
+EEM
Sbjct: 279 YEEM 282
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 102/191 (53%), Gaps = 3/191 (1%)
Query: 84 CTQL---LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT 140
C+QL L F+ +++++ SI+ ++ F + ++ AL +FD + G+ KP+++
Sbjct: 129 CSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVI 188
Query: 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200
YN ++D L + +V++ L+ M++ G+ PD ++YN+L++ L R M
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248
Query: 201 ESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVD 260
+ I PD+ T+ ALID+ + G + E+ + +M ++ + P I Y LI L ++D
Sbjct: 249 KREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLD 308
Query: 261 LAMTIFEEMNS 271
A +F M S
Sbjct: 309 EAEEMFGFMVS 319
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 107/234 (45%)
Query: 37 NCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQ 96
N +L + + L+ L ++ S + + F D L +++V
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 97 IASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVND 156
+ ++++ N II KS+Q++ AL + + ++ PD++TYN ++ L GR +D
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239
Query: 157 MLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALID 216
+ M + + PD ++N L++ K R+ ++ EM + PD++TY+ LI
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIY 299
Query: 217 SFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
++E+ +F M + P + Y LI+ K KV+ M +F EM+
Sbjct: 300 GLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMS 353
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 132/272 (48%), Gaps = 7/272 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I+ LCK+ V A+ LL + +K+ P+ YN ++ + + +++
Sbjct: 190 NTIIDGLCKSKQVDNALDLLNRM-EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS--C 246
Query: 61 VSSRTLSSDCYTNFA--RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118
++ R + D +T A A + ++ F EE+++ + I+ + +I+ +
Sbjct: 247 MTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306
Query: 119 IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178
+++A +F + C PD++TY+I+++ + +V + F M + GVV + ++Y
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238
L+ + +L++ FR M G+ P+++TY L+ G IE++L + DM++
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNG 426
Query: 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
+ I Y +I + K G+V A I+ +N
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 132/274 (48%), Gaps = 13/274 (4%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I LC +G S A R++ + + I+ P+ +N ++ A + + + + ++++
Sbjct: 225 NSLISGLCSSGRWSDATRMVSCMTKREIY-PDVFTFNALIDACVKEGRVSEAEEFYEEMI 283
Query: 61 VSSRTLSSD--CYTNFARAFIMT---DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115
R+L D Y+ M D+ ++ F+ V + P+ ++ + +I + K
Sbjct: 284 --RRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFM--VSKGCFPD-VVTYSILINGYCK 338
Query: 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS 175
S+++E + +F + + +TY I++ R G++N F M GV P+ I+
Sbjct: 339 SKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIIT 398
Query: 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235
YN LL+ L +++ L+ +M ++G+ D++TY +I + G + ++ ++ +
Sbjct: 399 YNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458
Query: 236 QQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
Q + P I+ Y +++ L K G A +F +M
Sbjct: 459 CQGLMPDIWTYTTMMLGLYKKGLRREADALFRKM 492
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 86/173 (49%)
Query: 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162
+ N +I A K ++ +A ++ + PD++TY++++ L R+++ F
Sbjct: 256 VFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFG 315
Query: 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222
M G PD ++Y+ L+N K ++++ + F EM + G+ + +TYT LI + R G
Sbjct: 316 FMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAG 375
Query: 223 NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275
+ + +F M + P+I Y L+ L GK++ A+ I +M + D
Sbjct: 376 KLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMD 428
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 90/181 (49%), Gaps = 3/181 (1%)
Query: 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD 137
F+ DD L +VQ SI +R++ A +K ++ + + +++ ++ L +
Sbjct: 59 FMKLDDSLDLFF---HMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHN 115
Query: 138 LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFR 197
L T NI+L+ R +++ L+ M + G P +++ +LLN + R+ L F
Sbjct: 116 LCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFD 175
Query: 198 EMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG 257
+M G KP+++ Y +ID ++ ++ +L L N M++ I P + Y SLI L G
Sbjct: 176 QMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSG 235
Query: 258 K 258
+
Sbjct: 236 R 236
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177
+++ +L +F H+ + P + ++ +L + ++ + + ++ + M+ G+ + + N
Sbjct: 61 KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
LLN + +L L L + +M + G +P ++T+ +L++ F R + ++L +F+ M
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279
+P++ +Y ++ID L K +VD A+ + M D GP
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRME---KDGIGP 219
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 5/171 (2%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETNDIDLSFQILKDLLV 61
NGY CK+ V ++L + + + Y ++ ++++ +I + ++
Sbjct: 334 NGY----CKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVF 389
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
+ Y + L+ + ++ + I+ N II K+ ++
Sbjct: 390 CGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVAD 449
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD 172
A I+ + PD+ TY ++ L + G + F MKE G++P+
Sbjct: 450 AWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 102/193 (52%)
Query: 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP 136
F + + + ++++V++ + +I + +A+ + D + C+P
Sbjct: 157 GFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQP 216
Query: 137 DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYF 196
DL+TY V++ L + G + LN M+ A + + + Y+T++++L K R D L F
Sbjct: 217 DLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLF 276
Query: 197 REMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKM 256
EM G++P+++TY++LI G ++ RL +DM +++I P++ + +LID K
Sbjct: 277 TEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKK 336
Query: 257 GKVDLAMTIFEEM 269
GK+ A ++EEM
Sbjct: 337 GKLVKAEKLYEEM 349
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 138/282 (48%), Gaps = 29/282 (10%)
Query: 6 IEKLCKAGNVSAAVRLLQSLR----DKNIFLPNAYNCVLVASAETNDIDLSFQILKDL-- 59
+ LCK G+ A+ LL + + N+ + Y+ V+ + + D + + ++
Sbjct: 225 VNGLCKRGDTDLALNLLNKMEAAKIEANVVI---YSTVIDSLCKYRHEDDALNLFTEMEN 281
Query: 60 ------LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113
+++ +L S C N+ R D ++LL ++++ +++ + +I AF
Sbjct: 282 KGVRPNVITYSSLIS-CLCNYGR----WSDASRLL---SDMIERKINPNLVTFSALIDAF 333
Query: 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD---ILGRVGRVNDMLNEFASMKEAGVV 170
K ++ KA +++ + P++ TY+ +++ +L R+G ML M +
Sbjct: 334 VKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLE---LMIRKDCL 390
Query: 171 PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRL 230
P+ ++YNTL+N K +R+D + FREM + G+ + +TYT LI F + + + + +
Sbjct: 391 PNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMV 450
Query: 231 FNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
F M + P+I Y L+D L K GK+ AM +FE + S
Sbjct: 451 FKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS 492
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 103/199 (51%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
+T + + ++ + I+ +VQ ++ ++ K + AL + + ++
Sbjct: 186 FTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKME 245
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
K + +++ Y+ V+D L + +D LN F M+ GV P+ I+Y++L++ L R
Sbjct: 246 AAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWS 305
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+M E I P+L+T++ALID+F + G + ++ +L+ +M ++ I P+I+ Y SLI
Sbjct: 306 DASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLI 365
Query: 251 DNLKKMGKVDLAMTIFEEM 269
+ + ++ A + E M
Sbjct: 366 NGFCMLDRLGEAKQMLELM 384
Score = 87.8 bits (216), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 126/263 (47%), Gaps = 3/263 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ LCK + A+ L + +K + PN Y+ ++ + ++L D++
Sbjct: 260 IDSLCKYRHEDDALNLFTEMENKGV-RPNVITYSSLISCLCNYGRWSDASRLLSDMIERK 318
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ ++ AF+ + EE+++ + +I + +I F ++ +A
Sbjct: 319 INPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAK 378
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+ + + C P+++TYN +++ + RV+ + F M + G+V + ++Y TL++
Sbjct: 379 QMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGF 438
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
+ R D + F++M G+ P++LTY L+D + G + +++ +F +++ + P I
Sbjct: 439 FQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDI 498
Query: 244 YVYRSLIDNLKKMGKVDLAMTIF 266
Y Y +I+ + K GK + F
Sbjct: 499 YTYNIMIEGMCKAGKWKMGGIYF 521
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 93/180 (51%)
Query: 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149
F E++ + ++ N +I F + ++ AL + + L +PD++T N +L+
Sbjct: 100 FGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFC 159
Query: 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209
R++D + M E G PD +++ TL++ L + + M + G +PDL+
Sbjct: 160 HGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLV 219
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TY A+++ + G+ + +L L N M+ +I ++ +Y ++ID+L K D A+ +F EM
Sbjct: 220 TYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEM 279
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 87/171 (50%)
Query: 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
SII ++++ A AK + + + + ++ L +L TYNI+++ R R++ L
Sbjct: 77 SIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALL 136
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
M + G PD ++ N+LLN R+ + +M E G KPD +T+T LI
Sbjct: 137 GKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLH 196
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
E++ L + M Q+ +P + Y ++++ L K G DLA+ + +M ++
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAA 247
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 126/266 (47%), Gaps = 3/266 (1%)
Query: 13 GNVSAAVRLLQSLRDKNIFLPNAYNCVLVAS--AETNDIDLSFQILKDLLVSSRTLSSDC 70
G+ ++RL + ++ + PN + ++ S +D ++ ++ + S
Sbjct: 119 GDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFS 178
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL-IFDHI 129
YT A+ L ++ + SI+ N +I A A+ + LL +F +
Sbjct: 179 YTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEM 238
Query: 130 KGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRL 189
+ +PD++TYN +L G ++ F +M + G+VPD +Y+ L+ K+RRL
Sbjct: 239 RHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRL 298
Query: 190 DLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSL 249
+ EM G PD+ +Y L++++ ++G+I+E++ +F+ M+ P+ Y L
Sbjct: 299 EKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358
Query: 250 IDNLKKMGKVDLAMTIFEEMNSSLSD 275
++ + G+ D +F EM SS +D
Sbjct: 359 LNLFGQSGRYDDVRQLFLEMKSSNTD 384
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 96/200 (48%)
Query: 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130
Y++ F ++ + E+ S I N ++ A+AKS I++A+ +F ++
Sbjct: 285 YSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQ 344
Query: 131 GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190
C P+ TY+++L++ G+ GR +D+ F MK + PD +YN L+ +
Sbjct: 345 AAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFK 404
Query: 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250
+ F +M E I+PD+ TY +I + G+ G E++ ++ M I PS Y +I
Sbjct: 405 EVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI 464
Query: 251 DNLKKMGKVDLAMTIFEEMN 270
+ + + A+ F M+
Sbjct: 465 EAFGQAALYEEALVAFNTMH 484
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%)
Query: 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162
+ + ++ F K R++EK + + PD+ +YN++L+ + G + + + F
Sbjct: 282 LTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFH 341
Query: 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222
M+ AG P+ +Y+ LLN + R D F EM S PD TY LI+ FG G
Sbjct: 342 QMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGG 401
Query: 223 NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
+E + LF+DM ++ I P + Y +I K G + A I + M ++
Sbjct: 402 YFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAN 451
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%)
Query: 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYN 142
D LL E+ I+ N ++ A A ++A ++F + PDL TY+
Sbjct: 227 DWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYS 286
Query: 143 IVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202
+++ G++ R+ + + M G +PD SYN LL K + + F +M +
Sbjct: 287 HLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA 346
Query: 203 GIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262
G P+ TY+ L++ FG++G ++ +LF +MK P Y LI+ + G
Sbjct: 347 GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV 406
Query: 263 MTIFEEM 269
+T+F +M
Sbjct: 407 VTLFHDM 413
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 110/249 (44%), Gaps = 8/249 (3%)
Query: 32 LPN--AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT---DDCTQ 86
LP+ +YN +L A A++ I + + + + T +++ Y+ F + DD Q
Sbjct: 314 LPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQ 373
Query: 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD 146
L F+E P++ N +I F + ++ + +F + +PD+ TY ++
Sbjct: 374 L--FLEMKSSNTDPDAA-TYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIF 430
Query: 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206
G+ G D M +VP +Y ++ + + L+ F M E G P
Sbjct: 431 ACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNP 490
Query: 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266
+ T+ +L+ SF R G ++ES + + + I + + + I+ K+ GK + A+ +
Sbjct: 491 SIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTY 550
Query: 267 EEMNSSLSD 275
+M S D
Sbjct: 551 VDMEKSRCD 559
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 101/231 (43%), Gaps = 3/231 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
IE + G V L + ++NI P+ Y ++ A + + + +IL+ + +
Sbjct: 394 IEVFGEGGYFKEVVTLFHDMVEENI-EPDMETYEGIIFACGKGGLHEDARKILQYMTAND 452
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
SS YT AF + L+ + ++ S SI + ++++FA+ ++++
Sbjct: 453 IVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESE 512
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
I + + T+N ++ + G+ + + + M+++ PD + +L+
Sbjct: 513 AILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVY 572
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234
R +D C F EM S I P ++ Y ++ +G+T ++ L +M
Sbjct: 573 SFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 75/161 (46%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
+I AF ++ E+AL+ F+ + + P + T++ +L R G V + + + ++G
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
+ + ++N + ++ + + + + +M +S PD T A++ + ++E
Sbjct: 523 IPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECR 582
Query: 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
F +MK I PSI Y ++ K + D + EEM
Sbjct: 583 EQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEM 623
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 104/189 (55%), Gaps = 3/189 (1%)
Query: 84 CTQLLI---FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT 140
C++ +I + ++++ ++ V+ +I F + ++ A+ + ++ + +PD++
Sbjct: 117 CSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVI 176
Query: 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200
YN ++D ++G VND + F M+ GV D ++YN+L+ L R R+M
Sbjct: 177 YNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMV 236
Query: 201 ESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVD 260
I P+++T+TA+ID F + G E+++L+ +M ++ + P ++ Y SLI+ L G+VD
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 296
Query: 261 LAMTIFEEM 269
A + + M
Sbjct: 297 EAKQMLDLM 305
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 6/269 (2%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNA--YNCVLVASAETNDIDLSFQILKDLLVSS 63
I C+ V A+ L+ + + F P+ YN ++ S + ++ + ++ +
Sbjct: 146 INGFCQGNRVFDAIDLVSKMEEMG-FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG 204
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ Y + + + + ++V ++I +I F K + +A+
Sbjct: 205 VRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAM 264
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
+++ + PD+ TYN +++ L GRV++ M G +PD ++YNTL+N
Sbjct: 265 KLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGF 324
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243
K +R+D FREM + G+ D +TY +I + + G + + +F+ M RP+I
Sbjct: 325 CKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS---RPNI 381
Query: 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272
Y L+ L +V+ A+ +FE M S
Sbjct: 382 RTYSILLYGLCMNWRVEKALVLFENMQKS 410
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 35/218 (16%)
Query: 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152
+++Q SI+ ++++ AKS+ + + +F H++ DL +YNIV++ L R
Sbjct: 59 KMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 118
Query: 153 R----------------------VNDMLNEF-------------ASMKEAGVVPDFISYN 177
R V+ ++N F + M+E G PD + YN
Sbjct: 119 RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 178
Query: 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237
T+++ KI ++ + F M G++ D +TY +L+ +G ++ RL DM +
Sbjct: 179 TIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMR 238
Query: 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275
I P++ + ++ID K GK AM ++EEM D
Sbjct: 239 DIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVD 276
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 128/301 (42%), Gaps = 33/301 (10%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSL-RDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61
N I+ CK G V+ AV L + RD YN ++ + + ++++D+++
Sbjct: 178 NTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVM 237
Query: 62 SSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121
+ +T F+ ++ + EE+ + + N +I ++++
Sbjct: 238 RDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDE 297
Query: 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181
A + D + C PD++TYN +++ + RV++ F M + G+V D I+YNT++
Sbjct: 298 AKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQ 357
Query: 182 NLRKIRRLD------------------------LC--------LIYFREMGESGIKPDLL 209
+ R D LC L+ F M +S I+ D+
Sbjct: 358 GYFQAGRPDAAQEIFSRMDSRPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDIT 417
Query: 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
TY +I + GN+E++ LF + + ++P + Y ++I + + D + ++ +M
Sbjct: 418 TYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKM 477
Query: 270 N 270
Sbjct: 478 Q 478
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 105/210 (50%), Gaps = 14/210 (6%)
Query: 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLL 60
N I LC G V A ++L + K LP+ YN ++ ++ +D ++ +++
Sbjct: 283 NSLINGLCMHGRVDEAKQMLDLMVTKGC-LPDVVTYNTLINGFCKSKRVDEGTKLFREM- 340
Query: 61 VSSRTLSSDC--YTNFARAFIMTD--DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116
+ R L D Y + + D Q E ++ S +I + +++ +
Sbjct: 341 -AQRGLVGDTITYNTIIQGYFQAGRPDAAQ-----EIFSRMDSRPNIRTYSILLYGLCMN 394
Query: 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176
++EKAL++F++++ + + D+ TYNIV+ + ++G V D + F S+ G+ PD +SY
Sbjct: 395 WRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSY 454
Query: 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKP 206
T+++ + R+ D + +R+M E G+ P
Sbjct: 455 TTMISGFCRKRQWDKSDLLYRKMQEDGLLP 484
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 12/241 (4%)
Query: 6 IEKLCKAGNVSAAVRLLQSLR----DKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61
I+ K G S A++L + + D ++F YN ++ +D + Q+L DL+V
Sbjct: 251 IDVFVKEGKFSEAMKLYEEMTRRCVDPDVF---TYNSLINGLCMHGRVDEAKQML-DLMV 306
Query: 62 SSRTLSSD-CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120
+ L Y F + + E+ Q I N II + ++ + +
Sbjct: 307 TKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPD 366
Query: 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180
A IF + +P++ TY+I+L L RV L F +M+++ + D +YN ++
Sbjct: 367 AAQEIFSRMDS---RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVI 423
Query: 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240
+ + KI ++ FR + G+KPD+++YT +I F R ++S L+ M++ +
Sbjct: 424 HGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLL 483
Query: 241 P 241
P
Sbjct: 484 P 484
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 128/272 (47%), Gaps = 7/272 (2%)
Query: 9 LCKAGNVSAAVRLLQSLRDKNIFLPNA-YNCVLVASAETNDIDLSFQILKDLLVSSRTLS 67
+CK+G + A+ LL+ + ++ I L Y+ ++ + +D +F + ++ +
Sbjct: 222 MCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKAD 281
Query: 68 SDCYTNFARAFIMT---DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124
YT R F DD +LL ++++ ++ + +I F K ++ +A
Sbjct: 282 IIIYTTLIRGFCYAGRWDDGAKLL---RDMIKRKITPDVVAFSALIDCFVKEGKLREAEE 338
Query: 125 IFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184
+ + PD +TY ++D + +++ + M G P+ ++N L+N
Sbjct: 339 LHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYC 398
Query: 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244
K +D L FR+M G+ D +TY LI F G +E + LF +M +++RP I
Sbjct: 399 KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIV 458
Query: 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276
Y+ L+D L G+ + A+ IFE++ S +L
Sbjct: 459 SYKILLDGLCDNGEPEKALEIFEKIEKSKMEL 490
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 94/185 (50%)
Query: 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144
++ L ++ +V++ ++I +N ++ + ++ A+L+ D + +P+ +TY V
Sbjct: 159 SEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPV 218
Query: 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI 204
L ++ + G+ + M+E + D + Y+ +++ L K LD F EM G
Sbjct: 219 LKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 278
Query: 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264
K D++ YT LI F G ++ +L DM +++I P + + +LID K GK+ A
Sbjct: 279 KADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEE 338
Query: 265 IFEEM 269
+ +EM
Sbjct: 339 LHKEM 343
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 3/192 (1%)
Query: 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147
++ I+ +V+ + + ++ KS Q A+ + ++ K K D + Y+I++D
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256
Query: 148 LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD 207
L + G +++ N F M+ G D I Y TL+ R D R+M + I PD
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316
Query: 208 LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFE 267
++ ++ALID F + G + E+ L +M Q+ I P Y SLID K ++D A + +
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376
Query: 268 EMNSSLSDLAGP 279
M +S GP
Sbjct: 377 LM---VSKGCGP 385
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 3/233 (1%)
Query: 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPN--AYNCVLVASAETNDIDLSFQILKDLLVSS 63
I+ CK + A +L + K PN +N ++ + N ID ++ + + +
Sbjct: 359 IDGFCKENQLDKANHMLDLMVSKGCG-PNIRTFNILINGYCKANLIDDGLELFRKMSLRG 417
Query: 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123
+ Y + F +E+V I+ ++ + + EKAL
Sbjct: 418 VVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKAL 477
Query: 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183
IF+ I+ K + D+ YNI++ + +V+D + F S+ GV PD +YN ++ L
Sbjct: 478 EIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGL 537
Query: 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236
K L + FR+M E G P+ TY LI + G+ +S +L ++K+
Sbjct: 538 CKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKR 590
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%)
Query: 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168
+I + R++ A I L +PD +T++ +++ L GRV++ L M E G
Sbjct: 113 MINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMG 172
Query: 169 VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228
P I+ N L+N L ++ ++ M E+G +P+ +TY ++ ++G ++
Sbjct: 173 HKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAM 232
Query: 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
L M++++I+ Y +ID L K G +D A +F EM
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 273
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
+ N +I F + ++E A +F + + +PD+++Y I+LD L G L F
Sbjct: 423 VTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEK 482
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
++++ + D YN +++ + ++D F + G+KPD+ TY +I + G+
Sbjct: 483 IEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS 542
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+ E+ LF M++ P+ Y LI G + + EE+
Sbjct: 543 LSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 77/150 (51%)
Query: 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL 179
+ A+ +F + + +P LI ++ + ++ R + + +L+ M+ G+ + + + +
Sbjct: 54 DDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIM 113
Query: 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239
+N + R+L L ++ + G +PD +T++ LI+ G + E+L L + M +
Sbjct: 114 INCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH 173
Query: 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269
+P++ +L++ L GKV A+ + + M
Sbjct: 174 KPTLITLNALVNGLCLNGKVSDAVLLIDRM 203
>sp|Q9ZU29|PP139_ARATH Pentatricopeptide repeat-containing protein At2g01390
OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2
Length = 577
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 94/169 (55%), Gaps = 8/169 (4%)
Query: 105 VVNRIIFAFAKSRQIEKALLIFD---HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161
++NR++ A ++KA L F+ IKG K D TY +LDI G GR+ M + F
Sbjct: 91 IINRVLKAHPP---MQKAWLFFNWAAQIKGFK--HDHFTYTTMLDIFGEAGRIQSMYSVF 145
Query: 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221
MKE GV+ D ++Y +L++ + +D + + EM ++G +P +++YTA +
Sbjct: 146 HLMKEKGVLIDTVTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFAD 205
Query: 222 GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
G +EE+ ++ +M + ++ P+ + Y L++ L GK + A+ IF +M
Sbjct: 206 GRVEEATEVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQ 254
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 3/171 (1%)
Query: 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163
+ +I + S ++ A+ +++ ++ C+P +++Y + +L GRV + +
Sbjct: 158 VTYTSLIHWVSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFADGRVEEATEVYKE 217
Query: 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223
M + V P+ +Y L+ L + + L F +M E G++PD LI + G
Sbjct: 218 MLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNILIAKALKFGE 277
Query: 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274
R+ MK+ + ++ ++ LK G+ D + E+NS +S
Sbjct: 278 TSFMTRVLVYMKENGVVLRYPIFVEALETLKAAGESD---DLLREVNSHIS 325
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270
YTAL+D + G+ E+++++ +M++++I PS+ Y L+ L+K + + +
Sbjct: 489 YTALMDVYISAGSPEKAMKILREMREREIMPSLGTYDVLLSGLEKTSDFQKEVALLRKEK 548
Query: 271 SSL 273
SL
Sbjct: 549 KSL 551
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.140 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,071,648
Number of Sequences: 539616
Number of extensions: 3697272
Number of successful extensions: 17988
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 12126
Number of HSP's gapped (non-prelim): 2985
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)