Query 023133
Match_columns 287
No_of_seqs 491 out of 1305
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 08:40:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.2E-51 9.2E-56 356.6 36.7 272 1-272 474-748 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-50 4.8E-55 352.1 36.7 273 1-273 509-784 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.6E-47 7.8E-52 328.2 30.7 268 1-278 261-529 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2E-46 4.3E-51 323.5 30.5 269 2-281 161-464 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 3.7E-45 8E-50 322.5 30.6 261 1-269 325-651 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.4E-44 3.1E-49 318.7 29.2 261 1-272 224-484 (857)
7 PRK11788 tetratricopeptide rep 99.9 1.1E-23 2.5E-28 171.4 30.8 274 6-283 42-322 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.5E-22 3.2E-27 164.9 30.6 264 2-271 72-346 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 4.5E-21 9.8E-26 171.8 33.7 264 5-275 539-802 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 7E-21 1.5E-25 170.6 34.3 267 3-275 571-869 (899)
11 PRK15174 Vi polysaccharide exp 99.9 9.7E-19 2.1E-23 149.9 33.9 265 6-276 83-385 (656)
12 PRK15174 Vi polysaccharide exp 99.9 7.1E-19 1.5E-23 150.7 32.6 266 5-276 48-317 (656)
13 KOG4626 O-linked N-acetylgluco 99.8 1.1E-18 2.3E-23 140.0 23.3 270 1-279 220-492 (966)
14 TIGR00990 3a0801s09 mitochondr 99.8 1E-16 2.2E-21 137.5 34.4 190 82-276 308-500 (615)
15 TIGR00990 3a0801s09 mitochondr 99.8 5.4E-17 1.2E-21 139.3 32.5 258 12-275 307-574 (615)
16 PF13429 TPR_15: Tetratricopep 99.8 6.3E-19 1.4E-23 136.8 12.1 260 5-271 14-276 (280)
17 PRK11447 cellulose synthase su 99.8 1.1E-15 2.4E-20 139.4 33.9 267 6-277 358-705 (1157)
18 PRK10747 putative protoheme IX 99.8 4.9E-15 1.1E-19 120.3 31.6 251 12-272 97-390 (398)
19 KOG4626 O-linked N-acetylgluco 99.8 1.6E-16 3.5E-21 127.8 20.4 268 1-277 118-422 (966)
20 PRK11447 cellulose synthase su 99.8 6.4E-15 1.4E-19 134.5 33.2 260 4-271 466-739 (1157)
21 PRK10049 pgaA outer membrane p 99.8 3.2E-14 6.9E-19 124.7 34.3 115 3-120 53-167 (765)
22 PF13429 TPR_15: Tetratricopep 99.8 9.7E-18 2.1E-22 130.2 11.1 236 38-279 13-250 (280)
23 TIGR00540 hemY_coli hemY prote 99.8 3.3E-14 7.1E-19 116.1 32.1 256 11-270 96-397 (409)
24 PRK10049 pgaA outer membrane p 99.7 2.7E-14 5.8E-19 125.2 33.1 202 78-284 247-468 (765)
25 PRK09782 bacteriophage N4 rece 99.7 3.6E-14 7.9E-19 125.3 33.0 236 34-279 478-713 (987)
26 KOG1126 DNA-binding cell divis 99.7 2.5E-15 5.5E-20 121.6 22.8 209 65-278 418-626 (638)
27 COG2956 Predicted N-acetylgluc 99.7 3.5E-14 7.6E-19 105.8 26.9 261 10-274 46-313 (389)
28 PRK09782 bacteriophage N4 rece 99.7 5E-14 1.1E-18 124.5 32.2 264 2-276 480-744 (987)
29 COG3071 HemY Uncharacterized e 99.7 1.9E-13 4.2E-18 104.7 29.0 254 12-273 97-391 (400)
30 KOG4422 Uncharacterized conser 99.7 8.7E-14 1.9E-18 107.6 27.0 159 1-163 209-381 (625)
31 KOG1155 Anaphase-promoting com 99.7 3.5E-14 7.7E-19 110.6 25.0 256 9-272 272-536 (559)
32 TIGR02521 type_IV_pilW type IV 99.7 1.1E-13 2.4E-18 104.6 26.1 202 68-273 31-233 (234)
33 PRK14574 hmsH outer membrane p 99.7 4.3E-13 9.2E-18 116.4 32.0 260 9-274 44-398 (822)
34 PRK12370 invasion protein regu 99.7 1.5E-13 3.2E-18 116.4 27.5 248 14-272 276-535 (553)
35 PRK14574 hmsH outer membrane p 99.7 1E-12 2.2E-17 114.1 32.2 270 6-278 109-451 (822)
36 KOG1126 DNA-binding cell divis 99.7 3.4E-14 7.4E-19 115.2 21.1 259 13-280 333-594 (638)
37 COG2956 Predicted N-acetylgluc 99.7 1.6E-12 3.6E-17 97.1 27.3 263 4-272 74-347 (389)
38 PRK10747 putative protoheme IX 99.7 4.4E-13 9.4E-18 109.0 26.4 221 8-236 162-389 (398)
39 TIGR02521 type_IV_pilW type IV 99.6 4.7E-13 1E-17 101.1 24.4 200 34-237 32-232 (234)
40 KOG1129 TPR repeat-containing 99.6 1.1E-13 2.4E-18 103.5 19.1 237 37-279 227-465 (478)
41 KOG4422 Uncharacterized conser 99.6 9.7E-13 2.1E-17 102.0 24.4 235 33-271 207-461 (625)
42 KOG2076 RNA polymerase III tra 99.6 9.7E-12 2.1E-16 104.4 31.1 269 9-279 149-485 (895)
43 KOG1155 Anaphase-promoting com 99.6 2.3E-12 5E-17 100.7 25.4 256 7-271 235-494 (559)
44 TIGR00540 hemY_coli hemY prote 99.6 1.1E-12 2.5E-17 107.1 25.0 228 6-236 160-398 (409)
45 PRK12370 invasion protein regu 99.6 2.3E-12 5.1E-17 109.1 25.5 228 34-271 257-501 (553)
46 COG3063 PilF Tfp pilus assembl 99.6 8.8E-12 1.9E-16 89.0 23.6 212 70-285 37-249 (250)
47 KOG2003 TPR repeat-containing 99.6 7.1E-12 1.5E-16 98.1 22.7 268 8-282 428-699 (840)
48 PF13041 PPR_2: PPR repeat fam 99.5 2.9E-14 6.3E-19 79.5 6.4 49 136-184 1-49 (50)
49 KOG1129 TPR repeat-containing 99.5 2E-12 4.3E-17 96.9 17.7 230 3-237 227-458 (478)
50 COG3071 HemY Uncharacterized e 99.5 5E-11 1.1E-15 91.7 24.8 230 4-241 158-394 (400)
51 KOG2076 RNA polymerase III tra 99.5 1.2E-10 2.7E-15 98.0 29.1 279 2-282 176-522 (895)
52 PF13041 PPR_2: PPR repeat fam 99.5 4.9E-14 1.1E-18 78.6 6.3 49 206-254 1-49 (50)
53 KOG1840 Kinesin light chain [C 99.5 4.2E-11 9.2E-16 97.8 25.8 237 34-270 200-477 (508)
54 PRK11189 lipoprotein NlpI; Pro 99.5 1.4E-10 3.1E-15 90.5 27.5 126 35-164 66-191 (296)
55 KOG1174 Anaphase-promoting com 99.5 8E-11 1.7E-15 91.1 24.7 266 4-277 237-505 (564)
56 PRK11189 lipoprotein NlpI; Pro 99.5 6.7E-11 1.4E-15 92.4 24.6 220 46-274 39-267 (296)
57 KOG1173 Anaphase-promoting com 99.5 1.6E-10 3.4E-15 92.8 26.5 272 6-283 251-529 (611)
58 KOG2002 TPR-containing nuclear 99.5 2.4E-11 5.2E-16 102.9 22.3 273 3-279 456-752 (1018)
59 PF04733 Coatomer_E: Coatomer 99.5 1E-11 2.3E-16 95.6 18.5 262 6-283 8-276 (290)
60 PF12569 NARP1: NMDA receptor- 99.5 9.9E-10 2.2E-14 90.9 30.3 261 6-273 11-335 (517)
61 KOG0495 HAT repeat protein [RN 99.5 1.5E-09 3.2E-14 88.9 29.9 270 1-277 518-787 (913)
62 KOG1840 Kinesin light chain [C 99.5 5.9E-11 1.3E-15 97.0 21.8 233 3-235 203-477 (508)
63 COG3063 PilF Tfp pilus assembl 99.4 3.8E-10 8.2E-15 80.8 21.7 200 34-237 36-236 (250)
64 KOG0547 Translocase of outer m 99.4 7.6E-10 1.7E-14 87.5 25.2 264 5-275 121-494 (606)
65 KOG2002 TPR-containing nuclear 99.4 1.9E-09 4.1E-14 91.8 28.7 274 3-283 274-570 (1018)
66 KOG4318 Bicoid mRNA stability 99.4 4.1E-11 9E-16 100.7 17.7 236 1-258 27-286 (1088)
67 KOG0495 HAT repeat protein [RN 99.4 2.4E-09 5.2E-14 87.7 27.0 261 8-274 593-882 (913)
68 KOG0547 Translocase of outer m 99.4 4.3E-10 9.4E-15 88.9 21.6 225 42-272 335-566 (606)
69 cd05804 StaR_like StaR_like; a 99.4 6E-09 1.3E-13 84.1 28.0 261 8-272 52-336 (355)
70 KOG2003 TPR repeat-containing 99.4 1.4E-09 2.9E-14 85.7 22.6 239 13-258 470-709 (840)
71 cd05804 StaR_like StaR_like; a 99.3 2.6E-08 5.7E-13 80.4 30.2 268 3-273 10-294 (355)
72 KOG1173 Anaphase-promoting com 99.3 2E-08 4.3E-13 81.0 24.3 244 6-255 285-534 (611)
73 KOG4318 Bicoid mRNA stability 99.2 1.2E-09 2.6E-14 92.1 17.0 243 20-283 11-278 (1088)
74 PF12569 NARP1: NMDA receptor- 99.2 4.8E-08 1E-12 81.0 25.3 229 38-273 9-292 (517)
75 TIGR03302 OM_YfiO outer membra 99.2 1.2E-08 2.6E-13 77.4 20.1 187 67-275 32-235 (235)
76 PLN02789 farnesyltranstransfer 99.2 1.7E-07 3.6E-12 73.5 26.3 233 35-274 39-304 (320)
77 KOG1915 Cell cycle control pro 99.2 3.3E-07 7.3E-12 72.8 27.2 261 11-277 153-541 (677)
78 PLN02789 farnesyltranstransfer 99.2 1.7E-07 3.7E-12 73.5 25.4 228 3-235 41-300 (320)
79 KOG1125 TPR repeat-containing 99.2 1.7E-08 3.6E-13 81.7 19.8 254 7-266 293-565 (579)
80 KOG4340 Uncharacterized conser 99.2 3.2E-08 7E-13 73.9 19.7 262 2-268 13-335 (459)
81 PF04733 Coatomer_E: Coatomer 99.1 9.4E-09 2E-13 79.4 17.1 218 5-237 41-265 (290)
82 KOG1174 Anaphase-promoting com 99.1 1.5E-07 3.3E-12 73.4 23.3 262 10-279 207-474 (564)
83 KOG1125 TPR repeat-containing 99.1 1.3E-08 2.9E-13 82.2 18.2 229 40-275 292-530 (579)
84 KOG0624 dsRNA-activated protei 99.1 2.5E-07 5.5E-12 70.6 23.7 198 78-281 165-379 (504)
85 KOG3081 Vesicle coat complex C 99.1 5.9E-07 1.3E-11 66.2 24.5 262 6-283 15-282 (299)
86 KOG1128 Uncharacterized conser 99.1 1.6E-08 3.5E-13 83.9 18.2 228 34-282 399-626 (777)
87 KOG1915 Cell cycle control pro 99.1 7.7E-07 1.7E-11 70.9 26.5 265 11-283 85-362 (677)
88 TIGR03302 OM_YfiO outer membra 99.1 5.4E-08 1.2E-12 73.8 19.4 167 34-202 34-232 (235)
89 PRK10370 formate-dependent nit 99.1 1.7E-07 3.7E-12 68.6 20.6 119 116-237 52-173 (198)
90 KOG4162 Predicted calmodulin-b 99.1 7.6E-07 1.6E-11 74.7 26.3 260 15-277 460-788 (799)
91 KOG1128 Uncharacterized conser 99.1 3E-08 6.5E-13 82.3 17.3 213 4-236 403-615 (777)
92 KOG1070 rRNA processing protei 99.0 4.5E-07 9.7E-12 80.6 25.1 235 22-261 1447-1689(1710)
93 PF12854 PPR_1: PPR repeat 99.0 6.2E-10 1.3E-14 55.9 4.0 30 204-233 3-32 (34)
94 PRK10370 formate-dependent nit 99.0 1.6E-07 3.5E-12 68.7 18.2 156 41-212 24-182 (198)
95 PF12854 PPR_1: PPR repeat 99.0 7.4E-10 1.6E-14 55.6 4.0 32 133-164 2-33 (34)
96 PRK15359 type III secretion sy 99.0 4.7E-08 1E-12 67.7 14.4 99 179-279 30-128 (144)
97 PRK04841 transcriptional regul 99.0 3.5E-06 7.5E-11 76.7 29.9 270 7-276 460-764 (903)
98 COG5010 TadD Flp pilus assembl 99.0 1.2E-07 2.6E-12 69.6 15.5 163 34-201 68-230 (257)
99 COG5010 TadD Flp pilus assembl 98.9 1.1E-06 2.5E-11 64.6 20.1 160 72-235 70-229 (257)
100 PRK15179 Vi polysaccharide bio 98.9 2.5E-06 5.4E-11 73.7 25.5 133 100-236 83-216 (694)
101 KOG3785 Uncharacterized conser 98.9 1.7E-06 3.8E-11 66.5 21.7 256 11-276 163-494 (557)
102 TIGR02552 LcrH_SycD type III s 98.9 8.7E-08 1.9E-12 65.9 13.7 105 176-282 20-124 (135)
103 KOG1156 N-terminal acetyltrans 98.9 4.7E-06 1E-10 68.8 25.2 260 11-277 19-288 (700)
104 KOG1156 N-terminal acetyltrans 98.9 1.1E-05 2.4E-10 66.8 27.2 59 213-273 376-435 (700)
105 PRK14720 transcript cleavage f 98.9 2E-06 4.3E-11 75.3 23.5 148 102-254 115-268 (906)
106 PRK15359 type III secretion sy 98.9 2.5E-07 5.4E-12 64.1 14.8 92 74-167 30-121 (144)
107 KOG4162 Predicted calmodulin-b 98.9 8.3E-06 1.8E-10 68.7 25.6 162 2-164 326-539 (799)
108 KOG1070 rRNA processing protei 98.9 4.7E-06 1E-10 74.5 24.6 227 2-234 1461-1697(1710)
109 PRK15179 Vi polysaccharide bio 98.9 3.1E-06 6.6E-11 73.2 23.2 148 64-215 82-229 (694)
110 KOG4340 Uncharacterized conser 98.8 8.4E-07 1.8E-11 66.6 16.9 95 34-131 11-106 (459)
111 KOG0548 Molecular co-chaperone 98.8 1.9E-05 4.1E-10 64.0 24.4 103 7-112 10-113 (539)
112 KOG3060 Uncharacterized conser 98.8 1.9E-05 4.1E-10 58.1 22.8 187 47-237 26-220 (289)
113 TIGR02552 LcrH_SycD type III s 98.8 6.2E-07 1.3E-11 61.6 14.0 95 71-167 20-114 (135)
114 COG4783 Putative Zn-dependent 98.8 1.9E-05 4.1E-10 63.4 23.4 118 113-235 316-435 (484)
115 PRK04841 transcriptional regul 98.8 2.9E-05 6.4E-10 70.8 28.2 267 6-272 416-720 (903)
116 KOG2047 mRNA splicing factor [ 98.8 4.9E-05 1.1E-09 63.2 26.1 61 175-235 389-452 (835)
117 KOG3785 Uncharacterized conser 98.8 4.6E-06 9.9E-11 64.3 18.9 57 213-269 398-454 (557)
118 KOG2376 Signal recognition par 98.8 4.6E-05 1E-09 62.6 25.4 192 6-203 19-254 (652)
119 KOG2376 Signal recognition par 98.7 6.3E-05 1.4E-09 61.8 25.5 102 174-277 377-492 (652)
120 KOG2047 mRNA splicing factor [ 98.7 8.7E-05 1.9E-09 61.7 27.1 273 2-279 390-694 (835)
121 PF09976 TPR_21: Tetratricopep 98.7 1.6E-06 3.5E-11 60.2 14.0 116 46-163 24-143 (145)
122 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2E-06 4.3E-11 69.0 15.4 126 34-166 170-296 (395)
123 KOG0548 Molecular co-chaperone 98.7 1.3E-05 2.9E-10 64.9 19.7 227 37-278 228-461 (539)
124 KOG3060 Uncharacterized conser 98.7 2E-05 4.3E-10 58.0 18.8 189 11-203 24-221 (289)
125 COG4783 Putative Zn-dependent 98.7 3.6E-05 7.8E-10 61.8 21.8 138 78-237 316-454 (484)
126 KOG3081 Vesicle coat complex C 98.6 8.2E-06 1.8E-10 60.3 16.0 218 5-237 47-271 (299)
127 PF09976 TPR_21: Tetratricopep 98.6 8.9E-06 1.9E-10 56.6 15.5 117 151-269 24-144 (145)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 5E-06 1.1E-10 66.8 15.7 126 104-235 170-295 (395)
129 KOG0985 Vesicle coat protein c 98.6 8.5E-05 1.8E-09 65.0 23.3 235 4-269 989-1246(1666)
130 PF10037 MRP-S27: Mitochondria 98.6 3.9E-06 8.5E-11 67.7 14.7 124 63-186 61-186 (429)
131 TIGR00756 PPR pentatricopeptid 98.6 1.5E-07 3.3E-12 47.8 4.4 33 140-172 2-34 (35)
132 TIGR00756 PPR pentatricopeptid 98.5 2.3E-07 5E-12 47.1 4.3 33 210-242 2-34 (35)
133 KOG0624 dsRNA-activated protei 98.5 0.00022 4.8E-09 55.1 26.3 227 7-238 114-371 (504)
134 KOG2053 Mitochondrial inherita 98.5 0.00058 1.3E-08 59.1 25.9 224 9-238 19-256 (932)
135 TIGR02795 tol_pal_ybgF tol-pal 98.5 7E-06 1.5E-10 54.9 12.2 104 175-278 4-111 (119)
136 PF13812 PPR_3: Pentatricopept 98.5 3.2E-07 7E-12 46.2 4.3 32 140-171 3-34 (34)
137 cd00189 TPR Tetratricopeptide 98.5 5.8E-06 1.3E-10 52.5 11.3 97 176-274 3-99 (100)
138 KOG3617 WD40 and TPR repeat-co 98.5 5.9E-05 1.3E-09 64.5 19.4 52 178-235 943-994 (1416)
139 PRK14720 transcript cleavage f 98.5 7.9E-05 1.7E-09 65.7 20.9 229 25-278 21-258 (906)
140 TIGR02795 tol_pal_ybgF tol-pal 98.5 1E-05 2.2E-10 54.1 12.7 98 35-132 4-105 (119)
141 PF10037 MRP-S27: Mitochondria 98.5 6.6E-06 1.4E-10 66.4 13.3 125 97-221 60-186 (429)
142 PLN03088 SGT1, suppressor of 98.5 6.1E-06 1.3E-10 66.3 13.1 102 145-250 9-110 (356)
143 PF13812 PPR_3: Pentatricopept 98.5 4.5E-07 9.8E-12 45.7 4.4 33 209-241 2-34 (34)
144 KOG3617 WD40 and TPR repeat-co 98.5 2.6E-05 5.6E-10 66.6 16.8 230 9-271 738-995 (1416)
145 KOG1914 mRNA cleavage and poly 98.4 0.00052 1.1E-08 56.2 28.7 133 140-274 368-503 (656)
146 PF05843 Suf: Suppressor of fo 98.4 1.9E-05 4.1E-10 61.3 13.9 130 104-236 2-135 (280)
147 PRK10866 outer membrane biogen 98.4 0.00014 3.1E-09 55.0 18.0 182 34-235 33-239 (243)
148 PRK15363 pathogenicity island 98.4 2.4E-05 5.1E-10 53.8 12.3 96 140-237 37-132 (157)
149 cd00189 TPR Tetratricopeptide 98.4 1.5E-05 3.3E-10 50.5 11.2 20 109-128 40-59 (100)
150 KOG0985 Vesicle coat protein c 98.4 0.00043 9.4E-09 60.8 22.1 211 34-266 1105-1335(1666)
151 KOG1127 TPR repeat-containing 98.4 0.00022 4.8E-09 62.3 20.2 183 84-272 474-659 (1238)
152 PRK10153 DNA-binding transcrip 98.4 0.00012 2.7E-09 61.5 18.6 145 134-281 333-491 (517)
153 PRK02603 photosystem I assembl 98.3 6.2E-05 1.3E-09 54.0 14.8 89 34-123 36-126 (172)
154 PF08579 RPM2: Mitochondrial r 98.3 1.8E-05 3.8E-10 50.7 10.4 73 147-219 34-115 (120)
155 PF01535 PPR: PPR repeat; Int 98.3 7.1E-07 1.5E-11 43.8 3.3 29 1-29 2-30 (31)
156 PF08579 RPM2: Mitochondrial r 98.3 2.1E-05 4.6E-10 50.3 10.4 78 108-185 30-116 (120)
157 KOG1127 TPR repeat-containing 98.3 0.00019 4.1E-09 62.8 19.0 215 49-270 474-698 (1238)
158 PF13432 TPR_16: Tetratricopep 98.3 5.4E-06 1.2E-10 48.8 6.9 63 214-277 3-65 (65)
159 PF12895 Apc3: Anaphase-promot 98.3 3.7E-06 8E-11 52.4 6.5 20 109-128 31-50 (84)
160 KOG3616 Selective LIM binding 98.3 0.00018 4E-09 61.1 17.9 165 44-233 743-907 (1636)
161 KOG3616 Selective LIM binding 98.3 0.00031 6.8E-09 59.7 18.7 137 111-269 740-876 (1636)
162 PF05843 Suf: Suppressor of fo 98.3 4.7E-05 1E-09 59.1 13.3 128 2-131 4-135 (280)
163 PF12895 Apc3: Anaphase-promot 98.2 4.5E-06 9.8E-11 52.0 6.1 80 187-268 3-83 (84)
164 PF01535 PPR: PPR repeat; Int 98.2 2E-06 4.4E-11 42.2 3.6 28 140-167 2-29 (31)
165 CHL00033 ycf3 photosystem I as 98.2 9.6E-05 2.1E-09 52.8 13.4 80 34-114 36-117 (168)
166 PF14938 SNAP: Soluble NSF att 98.2 0.00018 3.8E-09 56.1 15.7 197 69-269 36-260 (282)
167 PF06239 ECSIT: Evolutionarily 98.2 7.6E-05 1.6E-09 53.9 12.4 51 100-150 44-99 (228)
168 PRK10866 outer membrane biogen 98.2 0.0012 2.6E-08 50.1 20.3 177 74-270 38-239 (243)
169 KOG2053 Mitochondrial inherita 98.2 0.0032 7E-08 54.7 25.5 226 44-276 20-259 (932)
170 PLN03088 SGT1, suppressor of 98.2 9.1E-05 2E-09 59.6 14.2 92 6-98 9-100 (356)
171 PRK15363 pathogenicity island 98.2 0.00012 2.7E-09 50.4 12.7 97 103-201 35-131 (157)
172 PF14938 SNAP: Soluble NSF att 98.2 0.0011 2.3E-08 51.8 19.6 206 14-236 30-265 (282)
173 PF06239 ECSIT: Evolutionarily 98.2 4.5E-05 9.7E-10 55.1 10.6 51 135-185 44-99 (228)
174 KOG0553 TPR repeat-containing 98.2 2.3E-05 5E-10 59.1 9.4 100 147-250 90-189 (304)
175 PRK02603 photosystem I assembl 98.2 0.00039 8.6E-09 49.9 15.4 62 105-166 37-100 (172)
176 COG4235 Cytochrome c biogenesi 98.1 0.00046 1E-08 52.5 15.9 110 172-283 155-267 (287)
177 PF13525 YfiO: Outer membrane 98.1 0.00065 1.4E-08 50.1 16.7 53 9-61 15-70 (203)
178 CHL00033 ycf3 photosystem I as 98.1 0.00014 3.1E-09 51.9 12.8 63 140-202 37-101 (168)
179 KOG1914 mRNA cleavage and poly 98.1 0.0037 8E-08 51.5 22.8 174 84-259 347-526 (656)
180 PF12688 TPR_5: Tetratrico pep 98.1 0.00044 9.5E-09 45.9 13.4 57 40-96 8-66 (120)
181 PF13414 TPR_11: TPR repeat; P 98.1 3.4E-05 7.5E-10 45.9 7.2 67 207-274 2-69 (69)
182 KOG0550 Molecular chaperone (D 98.1 0.001 2.2E-08 52.8 16.7 260 7-275 57-353 (486)
183 PRK10153 DNA-binding transcrip 98.1 0.00074 1.6E-08 57.0 17.3 71 172-246 419-489 (517)
184 KOG2796 Uncharacterized conser 98.0 0.00042 9E-09 51.6 13.5 136 142-278 181-321 (366)
185 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0037 8E-08 49.4 21.8 241 2-265 3-284 (319)
186 PF14559 TPR_19: Tetratricopep 98.0 3.8E-05 8.3E-10 45.6 6.3 51 81-132 4-54 (68)
187 PF14559 TPR_19: Tetratricopep 98.0 3.1E-05 6.8E-10 45.9 5.8 53 10-62 2-54 (68)
188 PRK10803 tol-pal system protei 98.0 0.00029 6.2E-09 53.9 12.2 102 174-277 144-251 (263)
189 PF13371 TPR_9: Tetratricopept 97.9 7.4E-05 1.6E-09 45.0 7.0 66 216-282 3-68 (73)
190 KOG0553 TPR repeat-containing 97.9 0.00023 5E-09 53.9 10.8 129 42-174 90-222 (304)
191 PF13432 TPR_16: Tetratricopep 97.9 6.1E-05 1.3E-09 44.2 6.4 58 5-62 3-60 (65)
192 PF12688 TPR_5: Tetratrico pep 97.9 0.00099 2.2E-08 44.2 12.5 106 5-114 7-117 (120)
193 COG4235 Cytochrome c biogenesi 97.9 0.0022 4.8E-08 48.9 15.3 102 65-168 153-257 (287)
194 PRK10803 tol-pal system protei 97.8 0.00061 1.3E-08 52.2 12.0 104 34-139 144-251 (263)
195 PF13281 DUF4071: Domain of un 97.8 0.0099 2.1E-07 47.6 20.4 178 104-283 142-345 (374)
196 PF13414 TPR_11: TPR repeat; P 97.8 0.00017 3.6E-09 42.9 7.0 60 70-130 5-65 (69)
197 PF13525 YfiO: Outer membrane 97.8 0.0084 1.8E-07 44.3 18.9 64 35-98 7-72 (203)
198 COG4105 ComL DNA uptake lipopr 97.8 0.0091 2E-07 44.7 18.5 58 41-98 42-101 (254)
199 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.017 3.8E-07 46.7 24.6 60 2-61 45-104 (660)
200 PF03704 BTAD: Bacterial trans 97.7 0.0017 3.7E-08 45.1 11.6 71 175-246 64-139 (146)
201 COG4700 Uncharacterized protei 97.6 0.014 3E-07 41.5 18.3 126 100-229 86-214 (251)
202 PF12921 ATP13: Mitochondrial 97.5 0.0018 3.9E-08 43.4 9.5 86 172-257 1-102 (126)
203 PF13371 TPR_9: Tetratricopept 97.5 0.001 2.2E-08 40.0 7.7 56 7-62 3-58 (73)
204 PF03704 BTAD: Bacterial trans 97.5 0.00052 1.1E-08 47.8 7.0 71 35-106 64-139 (146)
205 PF12921 ATP13: Mitochondrial 97.5 0.0066 1.4E-07 40.8 11.5 84 137-220 1-100 (126)
206 PF13424 TPR_12: Tetratricopep 97.5 0.00069 1.5E-08 41.3 6.3 63 209-271 6-74 (78)
207 PF04840 Vps16_C: Vps16, C-ter 97.5 0.037 7.9E-07 43.9 20.1 110 105-234 179-288 (319)
208 KOG1130 Predicted G-alpha GTPa 97.4 0.0051 1.1E-07 49.1 12.1 266 7-272 25-344 (639)
209 PRK15331 chaperone protein Sic 97.4 0.02 4.4E-07 39.9 14.1 90 145-236 44-133 (165)
210 COG4700 Uncharacterized protei 97.4 0.026 5.7E-07 40.1 17.2 160 35-200 58-220 (251)
211 KOG2796 Uncharacterized conser 97.4 0.037 8.1E-07 41.7 21.9 143 104-249 178-325 (366)
212 COG1729 Uncharacterized protei 97.3 0.013 2.7E-07 44.3 12.5 88 45-132 153-244 (262)
213 KOG1538 Uncharacterized conser 97.3 0.081 1.8E-06 45.1 18.0 204 51-271 618-845 (1081)
214 KOG0550 Molecular chaperone (D 97.2 0.073 1.6E-06 42.8 17.1 166 68-237 168-350 (486)
215 KOG2114 Vacuolar assembly/sort 97.2 0.024 5.3E-07 49.3 14.6 173 6-200 341-517 (933)
216 KOG2280 Vacuolar assembly/sort 97.2 0.11 2.5E-06 44.8 20.6 112 136-266 682-793 (829)
217 PF13424 TPR_12: Tetratricopep 97.2 0.0023 5E-08 39.0 6.4 61 175-235 7-73 (78)
218 PRK15331 chaperone protein Sic 97.1 0.045 9.8E-07 38.2 14.9 92 109-202 43-134 (165)
219 COG1729 Uncharacterized protei 97.1 0.014 3.1E-07 44.1 11.0 104 175-279 144-251 (262)
220 KOG0543 FKBP-type peptidyl-pro 97.1 0.016 3.5E-07 46.2 11.7 95 69-166 258-354 (397)
221 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.023 5E-07 46.4 12.7 66 100-167 72-141 (453)
222 COG4649 Uncharacterized protei 97.1 0.052 1.1E-06 38.2 13.4 121 10-130 69-194 (221)
223 PF04053 Coatomer_WDAD: Coatom 97.1 0.058 1.3E-06 44.8 15.1 158 42-233 270-427 (443)
224 PF13512 TPR_18: Tetratricopep 97.0 0.02 4.3E-07 39.0 10.1 71 9-79 20-93 (142)
225 KOG2610 Uncharacterized conser 97.0 0.098 2.1E-06 41.0 14.7 150 116-268 116-272 (491)
226 PF13281 DUF4071: Domain of un 97.0 0.14 3.1E-06 41.2 20.5 31 207-237 304-334 (374)
227 COG4105 ComL DNA uptake lipopr 97.0 0.1 2.2E-06 39.3 20.7 63 214-277 173-238 (254)
228 KOG3941 Intermediate in Toll s 96.9 0.012 2.5E-07 44.7 9.0 51 135-185 64-119 (406)
229 PF10300 DUF3808: Protein of u 96.9 0.2 4.3E-06 42.3 18.2 159 111-272 196-376 (468)
230 COG3898 Uncharacterized membra 96.9 0.15 3.2E-06 40.8 27.4 216 45-272 132-392 (531)
231 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.069 1.5E-06 43.7 13.9 63 68-131 75-140 (453)
232 PF04053 Coatomer_WDAD: Coatom 96.9 0.2 4.3E-06 41.8 17.0 108 104-238 296-403 (443)
233 KOG3941 Intermediate in Toll s 96.9 0.016 3.4E-07 44.1 9.4 117 100-235 64-186 (406)
234 PF13428 TPR_14: Tetratricopep 96.9 0.0026 5.7E-08 33.8 4.0 34 245-278 3-36 (44)
235 PF13512 TPR_18: Tetratricopep 96.8 0.076 1.6E-06 36.2 12.2 19 259-277 115-133 (142)
236 KOG0543 FKBP-type peptidyl-pro 96.8 0.049 1.1E-06 43.5 12.2 139 41-202 216-355 (397)
237 PF09205 DUF1955: Domain of un 96.8 0.08 1.7E-06 35.4 12.9 137 79-240 13-152 (161)
238 KOG2041 WD40 repeat protein [G 96.7 0.2 4.3E-06 43.3 15.6 87 137-236 851-951 (1189)
239 PF10300 DUF3808: Protein of u 96.7 0.29 6.3E-06 41.3 18.4 164 35-200 190-374 (468)
240 PF08631 SPO22: Meiosis protei 96.7 0.19 4.2E-06 39.2 24.2 51 10-60 4-63 (278)
241 COG0457 NrfG FOG: TPR repeat [ 96.7 0.17 3.6E-06 37.6 29.2 226 46-275 36-268 (291)
242 smart00299 CLH Clathrin heavy 96.7 0.11 2.5E-06 35.6 14.9 85 37-129 11-95 (140)
243 KOG1538 Uncharacterized conser 96.6 0.39 8.4E-06 41.2 16.4 199 20-237 621-846 (1081)
244 PF13170 DUF4003: Protein of u 96.6 0.25 5.5E-06 38.8 19.2 22 191-212 200-221 (297)
245 PF07079 DUF1347: Protein of u 96.5 0.35 7.5E-06 39.6 25.2 263 9-277 16-332 (549)
246 PF09205 DUF1955: Domain of un 96.5 0.13 2.9E-06 34.4 11.7 137 9-169 12-151 (161)
247 PF10602 RPN7: 26S proteasome 96.5 0.054 1.2E-06 39.0 9.7 107 22-130 23-140 (177)
248 KOG1920 IkappaB kinase complex 96.5 0.44 9.5E-06 43.7 16.7 78 149-236 950-1027(1265)
249 PF13428 TPR_14: Tetratricopep 96.5 0.0054 1.2E-07 32.6 3.5 28 35-62 3-30 (44)
250 KOG1585 Protein required for f 96.5 0.24 5.3E-06 37.1 15.3 117 115-232 122-251 (308)
251 COG3118 Thioredoxin domain-con 96.4 0.3 6.4E-06 37.7 17.9 149 109-260 140-289 (304)
252 COG3629 DnrI DNA-binding trans 96.4 0.039 8.5E-07 42.4 8.9 77 35-112 155-236 (280)
253 KOG4555 TPR repeat-containing 96.4 0.16 3.4E-06 34.0 11.2 90 77-167 52-144 (175)
254 PF04184 ST7: ST7 protein; In 96.4 0.48 1E-05 39.4 17.0 58 179-236 265-323 (539)
255 KOG1941 Acetylcholine receptor 96.3 0.43 9.3E-06 38.0 14.2 226 10-235 17-273 (518)
256 PF08631 SPO22: Meiosis protei 96.3 0.39 8.5E-06 37.5 25.3 223 44-270 4-273 (278)
257 PRK11906 transcriptional regul 96.3 0.39 8.5E-06 39.6 14.2 81 191-274 322-403 (458)
258 KOG1130 Predicted G-alpha GTPa 96.3 0.076 1.7E-06 42.7 9.9 236 1-236 57-343 (639)
259 PF10602 RPN7: 26S proteasome 96.2 0.24 5.3E-06 35.6 11.8 98 69-166 37-141 (177)
260 PRK11906 transcriptional regul 96.2 0.6 1.3E-05 38.6 16.3 80 84-166 320-400 (458)
261 KOG4555 TPR repeat-containing 96.2 0.22 4.7E-06 33.4 11.1 91 42-133 52-145 (175)
262 COG3629 DnrI DNA-binding trans 96.1 0.12 2.6E-06 39.8 10.3 77 140-217 155-236 (280)
263 COG0457 NrfG FOG: TPR repeat [ 96.1 0.37 8E-06 35.7 25.6 222 13-237 37-265 (291)
264 COG3118 Thioredoxin domain-con 96.1 0.45 9.9E-06 36.7 16.8 144 76-223 142-287 (304)
265 KOG2610 Uncharacterized conser 96.1 0.31 6.6E-06 38.4 12.2 150 12-163 116-272 (491)
266 PF13170 DUF4003: Protein of u 96.1 0.51 1.1E-05 37.1 18.2 133 49-183 78-227 (297)
267 smart00299 CLH Clathrin heavy 96.1 0.27 5.8E-06 33.8 15.8 41 74-115 13-53 (140)
268 KOG4570 Uncharacterized conser 96.1 0.24 5.1E-06 38.5 11.3 48 153-200 115-162 (418)
269 KOG1585 Protein required for f 96.0 0.43 9.2E-06 35.8 16.0 207 34-267 32-251 (308)
270 PF07719 TPR_2: Tetratricopept 96.0 0.028 6E-07 27.6 4.4 31 245-275 3-33 (34)
271 KOG2114 Vacuolar assembly/sort 95.9 0.69 1.5E-05 40.9 14.6 207 36-269 337-547 (933)
272 PF04184 ST7: ST7 protein; In 95.9 0.85 1.8E-05 38.0 16.8 78 104-181 260-339 (539)
273 PF09613 HrpB1_HrpK: Bacterial 95.9 0.36 7.9E-06 33.7 12.0 50 11-60 22-71 (160)
274 KOG2041 WD40 repeat protein [G 95.8 1.2 2.6E-05 38.9 20.8 47 211-257 1024-1071(1189)
275 PF00515 TPR_1: Tetratricopept 95.8 0.036 7.8E-07 27.3 4.3 32 244-275 2-33 (34)
276 PF07035 Mic1: Colon cancer-as 95.7 0.44 9.6E-06 33.7 15.0 132 124-269 15-146 (167)
277 COG3898 Uncharacterized membra 95.7 0.88 1.9E-05 36.7 24.1 125 109-241 269-396 (531)
278 KOG1941 Acetylcholine receptor 95.7 0.87 1.9E-05 36.4 14.2 227 45-271 18-274 (518)
279 COG5107 RNA14 Pre-mRNA 3'-end 95.7 1 2.2E-05 37.1 20.6 128 105-236 399-530 (660)
280 KOG1550 Extracellular protein 95.5 1.5 3.2E-05 38.1 20.5 149 15-168 228-394 (552)
281 PF13176 TPR_7: Tetratricopept 95.4 0.034 7.4E-07 27.9 3.4 24 246-269 2-25 (36)
282 PF13431 TPR_17: Tetratricopep 95.3 0.038 8.2E-07 27.4 3.3 31 92-123 3-33 (34)
283 PF07035 Mic1: Colon cancer-as 95.2 0.71 1.5E-05 32.7 14.2 27 59-85 20-46 (167)
284 COG4785 NlpI Lipoprotein NlpI, 95.1 0.97 2.1E-05 33.4 16.1 161 68-238 99-267 (297)
285 PF13176 TPR_7: Tetratricopept 95.0 0.079 1.7E-06 26.6 4.1 26 210-235 1-26 (36)
286 PF13174 TPR_6: Tetratricopept 94.9 0.063 1.4E-06 26.0 3.5 28 248-275 5-32 (33)
287 KOG1550 Extracellular protein 94.8 2.5 5.4E-05 36.7 17.9 178 84-269 228-423 (552)
288 KOG2280 Vacuolar assembly/sort 94.7 2.8 6.2E-05 36.8 19.1 90 171-270 682-771 (829)
289 TIGR02561 HrpB1_HrpK type III 94.5 1 2.2E-05 31.1 11.1 52 11-62 22-73 (153)
290 PF13374 TPR_10: Tetratricopep 94.5 0.07 1.5E-06 27.6 3.4 25 245-269 4-28 (42)
291 PF13181 TPR_8: Tetratricopept 94.4 0.098 2.1E-06 25.6 3.6 30 245-274 3-32 (34)
292 COG4649 Uncharacterized protei 94.4 1.3 2.8E-05 31.5 13.7 23 213-235 172-194 (221)
293 KOG4570 Uncharacterized conser 94.3 1.7 3.6E-05 34.1 11.1 103 133-237 59-164 (418)
294 KOG1464 COP9 signalosome, subu 94.2 2 4.2E-05 33.0 19.2 250 11-268 39-328 (440)
295 PF09613 HrpB1_HrpK: Bacterial 94.2 1.3 2.9E-05 31.0 13.5 18 113-130 54-71 (160)
296 PF02259 FAT: FAT domain; Int 93.8 3 6.5E-05 33.7 21.0 65 137-201 145-212 (352)
297 KOG2063 Vacuolar assembly/sort 93.8 5.2 0.00011 36.5 14.7 114 2-115 507-638 (877)
298 PF07079 DUF1347: Protein of u 93.7 3.6 7.7E-05 34.1 27.3 79 189-269 437-521 (549)
299 PF11207 DUF2989: Protein of u 93.5 1.5 3.3E-05 32.0 9.3 79 183-263 117-198 (203)
300 KOG0276 Vesicle coat complex C 93.3 3.2 7E-05 35.7 12.0 97 80-197 649-745 (794)
301 PF13431 TPR_17: Tetratricopep 93.3 0.11 2.4E-06 25.7 2.4 30 24-53 4-33 (34)
302 PF00515 TPR_1: Tetratricopept 93.0 0.29 6.2E-06 23.9 3.8 25 106-130 4-28 (34)
303 PF02284 COX5A: Cytochrome c o 93.0 1.1 2.4E-05 28.6 6.9 60 191-251 28-87 (108)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 92.9 1.4 2.9E-05 27.9 7.2 46 50-95 24-69 (103)
305 PF13374 TPR_10: Tetratricopep 92.8 0.41 8.9E-06 24.5 4.5 29 208-236 2-30 (42)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 92.8 1 2.2E-05 28.4 6.5 63 188-251 22-84 (103)
307 PF11207 DUF2989: Protein of u 92.7 2 4.3E-05 31.4 8.9 73 155-228 123-198 (203)
308 COG1747 Uncharacterized N-term 92.7 5.6 0.00012 33.6 21.0 181 65-253 63-249 (711)
309 PF13929 mRNA_stabil: mRNA sta 92.6 3.9 8.5E-05 31.8 13.0 146 36-184 134-289 (292)
310 COG4455 ImpE Protein of avirul 92.6 1.6 3.4E-05 32.4 8.2 75 3-77 5-81 (273)
311 PRK15180 Vi polysaccharide bio 92.4 5.8 0.00013 33.3 13.5 122 78-203 299-421 (831)
312 PF07163 Pex26: Pex26 protein; 92.4 2.9 6.2E-05 32.3 9.7 87 75-161 90-181 (309)
313 KOG4648 Uncharacterized conser 92.3 0.68 1.5E-05 36.6 6.6 88 146-236 105-193 (536)
314 PF00637 Clathrin: Region in C 92.3 0.06 1.3E-06 37.2 0.9 84 74-164 13-96 (143)
315 PF07719 TPR_2: Tetratricopept 92.1 0.44 9.4E-06 23.1 3.8 21 109-129 7-27 (34)
316 PF00637 Clathrin: Region in C 92.1 0.054 1.2E-06 37.4 0.5 85 144-235 13-97 (143)
317 KOG4234 TPR repeat-containing 92.0 3.7 8E-05 30.1 9.6 90 77-167 104-197 (271)
318 PF10579 Rapsyn_N: Rapsyn N-te 92.0 0.54 1.2E-05 28.3 4.5 44 11-54 18-64 (80)
319 KOG4234 TPR repeat-containing 91.8 3 6.5E-05 30.5 8.8 91 146-237 103-197 (271)
320 PF07163 Pex26: Pex26 protein; 91.8 3.9 8.4E-05 31.6 9.8 87 40-126 90-181 (309)
321 PF09986 DUF2225: Uncharacteri 91.7 4.4 9.4E-05 30.3 10.1 77 210-287 120-208 (214)
322 COG2976 Uncharacterized protei 91.7 4 8.6E-05 29.7 13.8 95 180-276 96-192 (207)
323 PF02259 FAT: FAT domain; Int 91.7 6.1 0.00013 31.9 17.2 66 206-271 144-212 (352)
324 KOG3364 Membrane protein invol 91.5 3.1 6.8E-05 28.2 9.5 78 205-283 29-111 (149)
325 COG1747 Uncharacterized N-term 91.4 8.1 0.00018 32.8 23.3 175 35-217 68-248 (711)
326 PF14853 Fis1_TPR_C: Fis1 C-te 91.1 0.37 7.9E-06 26.7 3.0 31 249-279 7-37 (53)
327 smart00028 TPR Tetratricopepti 91.1 0.61 1.3E-05 21.5 3.8 29 246-274 4-32 (34)
328 PRK09687 putative lyase; Provi 91.1 6.3 0.00014 30.9 25.1 222 35-279 39-270 (280)
329 COG5187 RPN7 26S proteasome re 90.5 6.9 0.00015 30.5 12.1 25 139-163 116-140 (412)
330 PF13929 mRNA_stabil: mRNA sta 90.5 7 0.00015 30.5 15.6 139 82-220 142-290 (292)
331 PF07721 TPR_4: Tetratricopept 90.3 0.58 1.2E-05 21.3 2.9 20 248-267 6-25 (26)
332 PF13181 TPR_8: Tetratricopept 90.2 1.2 2.7E-05 21.4 4.4 27 210-236 3-29 (34)
333 PF14689 SPOB_a: Sensor_kinase 90.0 1.5 3.2E-05 25.3 5.0 46 224-271 6-51 (62)
334 KOG1586 Protein required for f 90.0 6.8 0.00015 29.5 18.9 16 44-59 25-40 (288)
335 TIGR02561 HrpB1_HrpK type III 89.9 4.9 0.00011 27.8 12.0 17 150-166 56-72 (153)
336 COG4455 ImpE Protein of avirul 89.8 3.4 7.4E-05 30.7 7.7 56 38-94 6-61 (273)
337 PF13174 TPR_6: Tetratricopept 89.7 0.61 1.3E-05 22.3 3.0 20 111-130 8-27 (33)
338 PF10345 Cohesin_load: Cohesin 89.7 14 0.0003 32.7 19.1 183 16-199 38-251 (608)
339 TIGR03504 FimV_Cterm FimV C-te 89.6 1.4 3E-05 23.3 4.3 23 214-236 5-27 (44)
340 PF02284 COX5A: Cytochrome c o 89.4 4 8.7E-05 26.1 9.4 46 156-201 28-73 (108)
341 PF11846 DUF3366: Domain of un 89.4 2.9 6.3E-05 30.6 7.5 35 240-274 141-175 (193)
342 PF04097 Nic96: Nup93/Nic96; 89.2 15 0.00033 32.5 19.0 44 4-47 116-159 (613)
343 TIGR03504 FimV_Cterm FimV C-te 89.0 1.1 2.4E-05 23.6 3.7 19 42-60 8-26 (44)
344 COG4785 NlpI Lipoprotein NlpI, 88.5 8.5 0.00018 28.7 16.2 184 78-272 75-266 (297)
345 KOG4648 Uncharacterized conser 88.4 5.4 0.00012 31.9 8.4 90 7-97 105-194 (536)
346 COG2909 MalT ATP-dependent tra 87.9 21 0.00046 32.5 21.8 87 80-166 427-525 (894)
347 COG3947 Response regulator con 87.8 11 0.00025 29.4 15.3 40 85-126 150-189 (361)
348 KOG4507 Uncharacterized conser 87.8 2.4 5.1E-05 36.3 6.5 97 183-280 617-713 (886)
349 KOG1464 COP9 signalosome, subu 87.7 11 0.00024 29.1 17.0 26 210-235 193-218 (440)
350 KOG0276 Vesicle coat complex C 87.6 12 0.00026 32.5 10.4 100 113-233 647-746 (794)
351 PF04097 Nic96: Nup93/Nic96; 87.6 20 0.00043 31.8 15.1 224 40-270 265-532 (613)
352 KOG4507 Uncharacterized conser 87.5 5 0.00011 34.5 8.2 87 45-132 619-705 (886)
353 KOG1920 IkappaB kinase complex 87.2 27 0.00059 33.0 19.7 87 171-269 933-1025(1265)
354 PF10579 Rapsyn_N: Rapsyn N-te 86.7 3.5 7.7E-05 24.9 5.2 47 220-266 18-66 (80)
355 KOG1258 mRNA processing protei 86.5 20 0.00044 30.9 26.3 127 4-131 50-179 (577)
356 KOG4077 Cytochrome c oxidase, 86.3 4.5 9.8E-05 27.1 5.9 59 191-250 67-125 (149)
357 KOG2062 26S proteasome regulat 86.2 25 0.00053 31.5 16.2 121 147-271 510-634 (929)
358 PHA02875 ankyrin repeat protei 86.1 19 0.0004 30.0 11.9 210 6-244 6-231 (413)
359 PRK10941 hypothetical protein; 86.0 11 0.00023 29.4 8.9 68 212-280 185-252 (269)
360 PF08424 NRDE-2: NRDE-2, neces 85.9 16 0.00036 29.3 15.2 146 22-169 8-185 (321)
361 KOG1258 mRNA processing protei 85.8 22 0.00049 30.7 18.8 183 34-222 298-489 (577)
362 PF14689 SPOB_a: Sensor_kinase 85.7 2.6 5.7E-05 24.2 4.3 27 140-166 25-51 (62)
363 TIGR02508 type_III_yscG type I 85.7 7.2 0.00016 25.0 8.1 15 113-127 49-63 (115)
364 PF06552 TOM20_plant: Plant sp 85.2 12 0.00026 27.0 9.4 17 15-31 7-23 (186)
365 KOG4642 Chaperone-dependent E3 84.4 16 0.00034 27.8 11.0 114 45-161 22-140 (284)
366 PF06552 TOM20_plant: Plant sp 83.7 14 0.0003 26.6 9.6 62 84-148 51-123 (186)
367 PF13762 MNE1: Mitochondrial s 83.1 13 0.00028 25.8 9.8 47 209-255 80-127 (145)
368 COG5159 RPN6 26S proteasome re 82.7 21 0.00046 27.9 11.0 124 111-234 11-151 (421)
369 COG2976 Uncharacterized protei 82.5 17 0.00036 26.7 15.3 87 111-202 97-188 (207)
370 COG0735 Fur Fe2+/Zn2+ uptake r 82.2 12 0.00026 26.0 7.1 45 25-69 12-56 (145)
371 COG5108 RPO41 Mitochondrial DN 82.0 24 0.00052 31.2 9.9 74 4-80 33-115 (1117)
372 cd00280 TRFH Telomeric Repeat 81.8 15 0.00034 26.5 7.5 20 77-96 120-139 (200)
373 PRK09687 putative lyase; Provi 81.7 23 0.00051 27.8 26.1 199 35-254 70-278 (280)
374 KOG4642 Chaperone-dependent E3 81.3 22 0.00047 27.1 10.7 118 9-128 20-142 (284)
375 TIGR02508 type_III_yscG type I 81.0 12 0.00026 24.0 8.5 50 148-203 49-98 (115)
376 PRK15180 Vi polysaccharide bio 80.9 34 0.00073 29.1 13.2 88 43-132 333-420 (831)
377 KOG0686 COP9 signalosome, subu 80.7 31 0.00067 28.5 14.0 91 34-126 151-252 (466)
378 COG2909 MalT ATP-dependent tra 80.3 48 0.001 30.5 22.6 260 6-268 367-684 (894)
379 KOG2063 Vacuolar assembly/sort 80.2 50 0.0011 30.6 15.9 27 35-61 506-532 (877)
380 COG5159 RPN6 26S proteasome re 80.1 27 0.00058 27.4 14.7 21 143-163 130-150 (421)
381 KOG2066 Vacuolar assembly/sort 79.3 49 0.0011 29.9 13.3 148 77-236 365-533 (846)
382 PF12862 Apc5: Anaphase-promot 79.2 13 0.00028 23.4 6.1 19 42-60 50-68 (94)
383 PF11768 DUF3312: Protein of u 79.2 41 0.00089 29.0 11.4 56 4-59 413-470 (545)
384 PRK13342 recombination factor 78.7 38 0.00082 28.4 20.1 108 176-283 230-348 (413)
385 PF09477 Type_III_YscG: Bacter 78.1 16 0.00035 23.7 8.9 8 115-122 52-59 (116)
386 COG0735 Fur Fe2+/Zn2+ uptake r 78.1 18 0.0004 25.0 7.0 62 55-117 8-69 (145)
387 KOG0687 26S proteasome regulat 77.4 35 0.00077 27.3 15.2 134 64-201 66-209 (393)
388 KOG2396 HAT (Half-A-TPR) repea 77.1 46 0.00099 28.4 19.5 211 49-271 337-558 (568)
389 KOG2471 TPR repeat-containing 76.8 46 0.001 28.4 9.9 108 111-220 248-381 (696)
390 PF11848 DUF3368: Domain of un 76.7 9.7 0.00021 20.5 4.9 31 220-250 14-44 (48)
391 PRK10941 hypothetical protein; 76.6 34 0.00074 26.7 9.0 79 35-114 183-262 (269)
392 KOG4077 Cytochrome c oxidase, 76.5 20 0.00044 24.1 7.3 48 155-202 66-113 (149)
393 KOG0686 COP9 signalosome, subu 76.2 43 0.00094 27.7 15.9 60 3-62 154-216 (466)
394 PF11846 DUF3366: Domain of un 76.0 23 0.00049 25.9 7.5 33 205-237 141-173 (193)
395 PRK11619 lytic murein transgly 75.6 61 0.0013 29.1 23.3 117 151-270 254-373 (644)
396 PF04762 IKI3: IKI3 family; I 75.3 68 0.0015 30.3 11.6 30 103-132 812-843 (928)
397 PF11663 Toxin_YhaV: Toxin wit 74.5 3.5 7.7E-05 27.9 2.5 30 151-182 108-137 (140)
398 PRK10564 maltose regulon perip 74.2 9.1 0.0002 30.0 5.0 43 205-247 253-296 (303)
399 KOG3807 Predicted membrane pro 73.9 36 0.00078 27.3 8.1 119 15-143 232-351 (556)
400 KOG2066 Vacuolar assembly/sort 73.9 70 0.0015 29.0 13.3 151 6-166 363-533 (846)
401 COG3947 Response regulator con 73.7 43 0.00092 26.5 15.5 71 175-246 281-356 (361)
402 PF11848 DUF3368: Domain of un 73.2 12 0.00027 20.1 5.0 20 154-173 18-37 (48)
403 PRK10564 maltose regulon perip 73.0 10 0.00022 29.8 5.0 32 104-135 258-289 (303)
404 PF13762 MNE1: Mitochondrial s 72.6 29 0.00063 24.1 11.9 81 141-221 42-128 (145)
405 PF07575 Nucleopor_Nup85: Nup8 72.0 23 0.0005 31.1 7.6 93 35-131 374-466 (566)
406 PF12862 Apc5: Anaphase-promot 71.8 22 0.00048 22.4 6.8 19 218-236 51-69 (94)
407 PF07575 Nucleopor_Nup85: Nup8 71.6 26 0.00056 30.8 7.9 25 105-129 427-451 (566)
408 PF11817 Foie-gras_1: Foie gra 71.4 34 0.00074 26.3 7.7 58 177-234 182-244 (247)
409 PHA02875 ankyrin repeat protei 70.9 60 0.0013 27.0 15.5 11 42-52 74-84 (413)
410 cd08819 CARD_MDA5_2 Caspase ac 70.7 23 0.00049 22.1 6.9 65 192-262 21-85 (88)
411 COG4259 Uncharacterized protei 70.7 25 0.00054 22.5 6.0 32 248-279 77-108 (121)
412 PF04090 RNA_pol_I_TF: RNA pol 70.5 30 0.00065 25.5 6.7 25 4-28 46-70 (199)
413 COG0790 FOG: TPR repeat, SEL1 69.7 52 0.0011 25.8 21.9 190 45-247 53-276 (292)
414 PF10475 DUF2450: Protein of u 69.7 54 0.0012 25.9 10.1 111 108-229 103-218 (291)
415 smart00386 HAT HAT (Half-A-TPR 69.4 10 0.00022 17.5 3.6 17 14-30 2-18 (33)
416 KOG2297 Predicted translation 68.6 58 0.0013 25.9 17.0 69 149-227 266-340 (412)
417 COG5187 RPN7 26S proteasome re 68.6 57 0.0012 25.8 12.9 99 101-201 113-220 (412)
418 PF09670 Cas_Cas02710: CRISPR- 68.1 69 0.0015 26.6 12.3 56 41-97 139-198 (379)
419 PF11663 Toxin_YhaV: Toxin wit 68.0 6.8 0.00015 26.6 2.8 32 185-218 107-138 (140)
420 KOG2396 HAT (Half-A-TPR) repea 67.9 78 0.0017 27.1 22.3 216 52-283 301-534 (568)
421 PF09454 Vps23_core: Vps23 cor 67.5 17 0.00037 21.1 4.1 31 138-168 8-38 (65)
422 COG5108 RPO41 Mitochondrial DN 67.5 64 0.0014 28.8 8.8 91 108-201 33-131 (1117)
423 KOG2062 26S proteasome regulat 67.4 98 0.0021 28.1 12.3 27 176-202 213-239 (929)
424 PF09477 Type_III_YscG: Bacter 67.2 32 0.0007 22.4 8.5 87 47-141 20-106 (116)
425 COG0790 FOG: TPR repeat, SEL1 67.1 59 0.0013 25.5 23.5 183 79-274 52-268 (292)
426 PF11817 Foie-gras_1: Foie gra 66.6 26 0.00056 26.9 6.2 80 15-95 161-245 (247)
427 KOG2422 Uncharacterized conser 66.0 92 0.002 27.3 16.8 159 116-274 251-450 (665)
428 PRK11639 zinc uptake transcrip 65.8 47 0.001 23.8 7.2 38 81-118 38-75 (169)
429 KOG0376 Serine-threonine phosp 65.4 11 0.00023 31.6 3.9 105 145-255 11-117 (476)
430 KOG1308 Hsp70-interacting prot 64.8 5.4 0.00012 31.8 2.1 90 115-207 126-216 (377)
431 PF09670 Cas_Cas02710: CRISPR- 64.8 81 0.0017 26.2 11.2 55 112-167 140-198 (379)
432 PF04910 Tcf25: Transcriptiona 64.4 80 0.0017 26.0 17.4 57 180-236 110-167 (360)
433 PF10366 Vps39_1: Vacuolar sor 64.2 38 0.00081 22.1 7.3 53 3-61 3-67 (108)
434 PF08311 Mad3_BUB1_I: Mad3/BUB 63.8 42 0.00092 22.6 7.0 84 9-94 36-125 (126)
435 smart00804 TAP_C C-terminal do 63.8 8.4 0.00018 22.3 2.3 24 13-36 39-62 (63)
436 KOG1308 Hsp70-interacting prot 63.3 6.2 0.00014 31.5 2.2 90 45-136 126-215 (377)
437 KOG0376 Serine-threonine phosp 62.8 29 0.00064 29.2 6.0 104 75-183 11-115 (476)
438 PF05944 Phage_term_smal: Phag 62.7 46 0.001 22.7 6.9 45 21-65 35-80 (132)
439 PF00244 14-3-3: 14-3-3 protei 62.1 69 0.0015 24.5 12.3 57 38-94 6-63 (236)
440 PF09868 DUF2095: Uncharacteri 61.8 32 0.00068 22.6 4.7 35 39-74 67-101 (128)
441 KOG4567 GTPase-activating prot 61.6 82 0.0018 25.2 8.9 43 159-201 264-306 (370)
442 cd08819 CARD_MDA5_2 Caspase ac 61.4 37 0.00081 21.2 6.8 64 158-227 22-85 (88)
443 PRK05414 urocanate hydratase; 61.3 23 0.00049 30.2 5.1 157 117-287 217-398 (556)
444 COG4976 Predicted methyltransf 60.9 30 0.00066 26.2 5.2 53 184-237 6-58 (287)
445 cd00280 TRFH Telomeric Repeat 60.8 63 0.0014 23.6 11.4 67 84-153 85-158 (200)
446 PF08311 Mad3_BUB1_I: Mad3/BUB 60.4 49 0.0011 22.3 9.4 43 226-268 81-124 (126)
447 PF14853 Fis1_TPR_C: Fis1 C-te 59.7 28 0.00062 19.2 5.4 23 39-61 7-29 (53)
448 KOG0890 Protein kinase of the 59.5 2.4E+02 0.0051 29.8 21.8 68 208-278 1670-1738(2382)
449 cd02682 MIT_AAA_Arch MIT: doma 59.5 31 0.00068 20.8 4.2 26 211-236 9-34 (75)
450 PF09454 Vps23_core: Vps23 cor 59.3 33 0.00072 20.0 4.8 49 171-220 6-54 (65)
451 PRK09857 putative transposase; 59.2 89 0.0019 24.8 9.0 101 73-175 177-277 (292)
452 PRK11639 zinc uptake transcrip 59.1 64 0.0014 23.1 7.3 37 152-188 39-75 (169)
453 PRK11619 lytic murein transgly 59.1 1.4E+02 0.003 27.0 22.8 95 186-282 254-351 (644)
454 PF10366 Vps39_1: Vacuolar sor 58.3 50 0.0011 21.6 7.5 27 210-236 41-67 (108)
455 KOG2659 LisH motif-containing 58.2 79 0.0017 23.9 9.7 97 135-233 23-128 (228)
456 KOG0991 Replication factor C, 57.6 85 0.0018 24.1 11.5 131 6-144 137-279 (333)
457 KOG0687 26S proteasome regulat 57.5 1E+02 0.0022 24.9 14.3 98 174-273 105-211 (393)
458 KOG4567 GTPase-activating prot 57.1 99 0.0022 24.7 9.5 58 123-185 263-320 (370)
459 KOG4521 Nuclear pore complex, 56.8 1.9E+02 0.0042 28.0 13.3 56 71-126 986-1044(1480)
460 PF12002 MgsA_C: MgsA AAA+ ATP 56.7 71 0.0015 22.9 8.8 32 188-219 3-34 (168)
461 PF10345 Cohesin_load: Cohesin 56.7 1.5E+02 0.0032 26.5 29.2 159 5-164 65-251 (608)
462 PF08424 NRDE-2: NRDE-2, neces 56.5 1E+02 0.0023 24.8 18.2 46 156-202 49-94 (321)
463 KOG2297 Predicted translation 56.4 1E+02 0.0022 24.7 14.1 70 114-193 266-341 (412)
464 cd07153 Fur_like Ferric uptake 56.4 41 0.00088 22.0 5.0 44 180-223 7-50 (116)
465 PHA02537 M terminase endonucle 56.2 88 0.0019 23.8 10.0 32 34-65 84-115 (230)
466 KOG0890 Protein kinase of the 56.2 2.7E+02 0.0058 29.4 20.0 119 5-130 1389-1510(2382)
467 TIGR01228 hutU urocanate hydra 56.1 29 0.00062 29.4 4.9 158 116-287 207-389 (545)
468 PF11838 ERAP1_C: ERAP1-like C 55.8 1E+02 0.0022 24.5 20.5 79 155-236 147-229 (324)
469 cd07153 Fur_like Ferric uptake 54.8 37 0.0008 22.2 4.6 45 214-258 6-50 (116)
470 PRK09462 fur ferric uptake reg 54.8 69 0.0015 22.2 7.4 60 164-224 8-68 (148)
471 PF03943 TAP_C: TAP C-terminal 54.7 5.2 0.00011 21.9 0.4 24 12-35 26-49 (51)
472 PRK13341 recombination factor 54.4 1.8E+02 0.0038 26.8 20.2 109 174-284 260-376 (725)
473 KOG1839 Uncharacterized protei 54.0 2.2E+02 0.0048 27.8 11.9 154 78-231 942-1122(1236)
474 KOG1839 Uncharacterized protei 53.4 2.3E+02 0.0049 27.7 10.9 157 112-269 941-1125(1236)
475 PF07678 A2M_comp: A-macroglob 53.2 1E+02 0.0022 23.7 7.7 15 255-269 204-218 (246)
476 KOG3636 Uncharacterized conser 52.9 1.4E+02 0.0031 25.2 12.8 88 166-254 176-271 (669)
477 PF07378 FlbT: Flagellar prote 52.8 70 0.0015 21.6 6.4 63 34-96 53-119 (126)
478 KOG3364 Membrane protein invol 52.5 75 0.0016 21.9 8.4 24 109-132 77-100 (149)
479 PF04190 DUF410: Protein of un 52.4 1.1E+02 0.0024 23.8 18.2 27 101-127 88-114 (260)
480 PF01475 FUR: Ferric uptake re 52.1 40 0.00087 22.3 4.5 44 179-222 13-56 (120)
481 KOG2300 Uncharacterized conser 51.9 1.6E+02 0.0034 25.4 18.5 181 15-199 298-511 (629)
482 PF03745 DUF309: Domain of unk 51.6 45 0.00098 19.1 5.9 47 219-265 10-61 (62)
483 PF02847 MA3: MA3 domain; Int 51.6 65 0.0014 20.9 7.2 59 4-63 7-67 (113)
484 PF01475 FUR: Ferric uptake re 51.6 26 0.00057 23.2 3.5 15 49-63 23-37 (120)
485 PF04910 Tcf25: Transcriptiona 51.3 1.4E+02 0.003 24.6 21.5 56 110-165 110-166 (360)
486 PRK09462 fur ferric uptake reg 51.1 81 0.0017 21.9 7.1 34 84-117 33-66 (148)
487 PF12968 DUF3856: Domain of Un 50.2 76 0.0017 21.3 5.4 62 208-269 55-126 (144)
488 COG2256 MGS1 ATPase related to 50.0 1.5E+02 0.0033 24.8 16.2 113 172-284 245-368 (436)
489 PF07678 A2M_comp: A-macroglob 49.3 36 0.00077 26.1 4.4 49 224-274 115-163 (246)
490 PF10475 DUF2450: Protein of u 49.1 1.3E+02 0.0029 23.8 9.7 117 36-163 101-222 (291)
491 PF09868 DUF2095: Uncharacteri 49.0 76 0.0016 20.9 5.2 25 109-133 67-91 (128)
492 PF07064 RIC1: RIC1; InterPro 48.7 1.3E+02 0.0028 23.5 16.1 67 213-279 184-256 (258)
493 KOG3677 RNA polymerase I-assoc 48.4 1.7E+02 0.0036 24.7 8.1 59 35-94 237-298 (525)
494 PF02847 MA3: MA3 domain; Int 48.3 74 0.0016 20.6 7.2 22 108-129 7-28 (113)
495 PF15297 CKAP2_C: Cytoskeleton 48.3 1.5E+02 0.0033 24.2 9.6 64 119-184 119-186 (353)
496 KOG2471 TPR repeat-containing 47.7 1.9E+02 0.004 25.1 16.1 270 11-286 29-376 (696)
497 smart00544 MA3 Domain in DAP-5 47.4 77 0.0017 20.6 9.0 59 4-63 7-67 (113)
498 COG4003 Uncharacterized protei 45.9 69 0.0015 19.6 4.3 26 38-63 36-61 (98)
499 PF12926 MOZART2: Mitotic-spin 45.3 75 0.0016 19.8 7.9 42 89-130 29-70 (88)
500 TIGR03362 VI_chp_7 type VI sec 44.8 1.4E+02 0.0031 23.8 7.0 57 215-271 220-278 (301)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-51 Score=356.64 Aligned_cols=272 Identities=18% Similarity=0.299 Sum_probs=206.7
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (287)
+||.||.+|++.|++++|.++|++|.+.|+.|+ .+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|+
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 467777777777777777777777777777766 7777777777777777777777777777777777777777777777
Q ss_pred ccCChHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 023133 80 MTDDCTQLLIFIEEVVQ--IASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 157 (287)
+.|++++|.++|++|.+ .|+.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deA 633 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHH
Confidence 77777777777777765 4566777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 158 LNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.
T Consensus 634 l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~ 713 (1060)
T PLN03218 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
|+.||..+|+.+|.+|++.|++++|.++|++|...
T Consensus 714 g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777544
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-50 Score=352.14 Aligned_cols=273 Identities=16% Similarity=0.297 Sum_probs=267.6
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHH--hcCCCCHHHHHHHHHH
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLV--SSRTLSSDCYTNFARA 77 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~ 77 (287)
+||.||.+|++.|++++|.++|++|.+.+..|+ .+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~a 588 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 599999999999999999999999999999999 9999999999999999999999999986 5789999999999999
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 157 (287)
|++.|++++|.++|+.|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA 668 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA 668 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 158 LNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
|+.||..+|+.++.+|++.|++++|.+++++|.+..
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999997764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-47 Score=328.16 Aligned_cols=268 Identities=18% Similarity=0.314 Sum_probs=255.1
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
+||+||.+|++.|++++|.++|++|...+. .+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~---vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTT---VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCCh---hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999999987654 49999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.|++++|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|. .||..+||+||.+|++.|+.++|.++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 58999999999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh-CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE-SGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 239 (287)
|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~ 490 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PF 490 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CC
Confidence 99999999999999999999999999999999999999985 699999999999999999999999999999876 47
Q ss_pred CcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
.|+..+|++++.+|...|+++.|..+++++.+..|+.+.
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~ 529 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLN 529 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCc
Confidence 899999999999999999999999999999888886553
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-46 Score=323.54 Aligned_cols=269 Identities=15% Similarity=0.303 Sum_probs=137.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH----------
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCY---------- 71 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---------- 71 (287)
||.|+.+|++.|++++|.++|++|.+.+. .+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~---~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNL---ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCe---eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC
Confidence 45555555555555555555555543222 25555555555555555555555555544444443333
Q ss_pred -------------------------HHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 72 -------------------------TNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126 (287)
Q Consensus 72 -------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (287)
+.|+.+|++.|++++|.++|+.|. ++|..+||.++.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 333344444444444444444432 234444444444444444444444444
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcC
Q 023133 127 DHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206 (287)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 206 (287)
++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .|
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CC
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444443 24
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhh
Q 023133 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKD 281 (287)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (287)
|..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+..+..|+..+
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 555566666666666666666666666666666666666666666666666666666666666554444444333
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-45 Score=322.46 Aligned_cols=261 Identities=21% Similarity=0.327 Sum_probs=213.1
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
+||+||.+|++.|++++|.++|++|...+. .+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~---~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMETKDA---VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCe---eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 589999999999999999999999986544 48999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.|+++.+.++++.+.+.|+.++..+++.|+++|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|..+
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 47888999999999999999999999
Q ss_pred HHHHHHcCCCCChhH-----------------------------------------------------------------
Q 023133 161 FASMKEAGVVPDFIS----------------------------------------------------------------- 175 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 175 (287)
|++|.. ++.||..|
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 999875 35555544
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCcchHhHHHHHHHHH
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK-QQQIRPSIYVYRSLIDNLK 254 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~ 254 (287)
|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|+.++++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 555555556666666666666666666666666666666666666666666666666666 4566666666666666666
Q ss_pred hcCChHHHHHHHHHH
Q 023133 255 KMGKVDLAMTIFEEM 269 (287)
Q Consensus 255 ~~g~~~~a~~~~~~~ 269 (287)
+.|++++|.+++++|
T Consensus 637 r~G~~~eA~~~~~~m 651 (857)
T PLN03077 637 RAGKLTEAYNFINKM 651 (857)
T ss_pred hCCCHHHHHHHHHHC
Confidence 666666666666665
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-44 Score=318.73 Aligned_cols=261 Identities=17% Similarity=0.248 Sum_probs=251.6
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
+||+||.+|++.|++++|.++|++|...+.. +|+.++.+|++.|++++|+++|++|...|+.||..||+.++.+|++
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~---s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~ 300 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCI---SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcc---hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Confidence 5899999999999999999999999875554 8999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++
T Consensus 301 ~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999997 58999999999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 240 (287)
|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---- 452 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---- 452 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cchHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
+|..+|+.+|.+|++.|+.++|.++|++|...
T Consensus 453 ~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~ 484 (857)
T PLN03077 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT 484 (857)
T ss_pred CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 58889999999999999999999999999753
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.1e-23 Score=171.44 Aligned_cols=274 Identities=9% Similarity=0.036 Sum_probs=214.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhccC
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS---SDCYTNFARAFIMTD 82 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 82 (287)
...+...|++++|+..|.++.+.++....++..+...+...|++++|..+++.+...+..++ ...+..+...+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456778999999999999887764447888888899999999999999998886532221 245677888888999
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCCHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL----ITYNIVLDILGRVGRVNDML 158 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 158 (287)
+++.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999988764 566778888999999999999999999988775422221 23456777788899999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
..|+++.+... .+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++.+.
T Consensus 201 ~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 99999887642 2456777788889999999999999999887532222456788888999999999999999998875
Q ss_pred CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
.|+...+..++..+.+.|++++|..+++++.+..|+.+....+.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 46666678888889999999999999999888888776554433
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.5e-22 Score=164.87 Aligned_cols=264 Identities=11% Similarity=0.101 Sum_probs=222.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARA 77 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (287)
|..+...+...|++++|..+++.+......++ ..+..++..+.+.|+++.|..+|+++.+. .+++..++..++..
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~ 150 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEI 150 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 56788899999999999999999987654332 46788899999999999999999999875 24567789999999
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPES----IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+.+.|+
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999988763332 2345677888899999999999999998764 3346678888899999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFND 233 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 233 (287)
+++|.++|+++.+.+......+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999987643333567888999999999999999999999886 46767778899999999999999999999
Q ss_pred HHhCCCCcchHhHHHHHHHHHh---cCChHHHHHHHHHHhh
Q 023133 234 MKQQQIRPSIYVYRSLIDNLKK---MGKVDLAMTIFEEMNS 271 (287)
Q Consensus 234 ~~~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~ 271 (287)
+.+. .|+...+..++..+.. .|+.+++..+++++.+
T Consensus 308 ~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 308 QLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 9875 6888899888887764 5689999999998864
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=4.5e-21 Score=171.84 Aligned_cols=264 Identities=13% Similarity=0.119 Sum_probs=132.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
+...+.+.|+.++|...|+++...++.....+..++..+.+.|++++|..+++.+... .+.+...|..+..++...|++
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCH
Confidence 3444444444444444444444433322244444455555555555555555555432 233444555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
++|...++++.+.. +.+...+..+...+.+.|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555443 3344445555555555555555555555554432 223444555555555555555555555555
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchH
Q 023133 165 KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244 (287)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 244 (287)
.+.+. ++...+..+...+...|++++|.+.++.+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+..
T Consensus 696 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~ 771 (899)
T TIGR02917 696 QKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV 771 (899)
T ss_pred HhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 44432 234445555555555555555555555555442 333444445555555555555555555555432 33444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.+..+...|...|++++|.+.|+++.+..|+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 5555555555555555555555555555544
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=7e-21 Score=170.62 Aligned_cols=267 Identities=12% Similarity=0.128 Sum_probs=147.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
..++..|...|++++|..+++.+....+..+.+|..+..++...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 4566666677777777777777666554444666667777777777777777777666542 234455556666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
++++|...++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...|+
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666666666554 3445555556666666666666666665555443 2344445555555555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ---- 238 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---- 238 (287)
.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+..
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence 554432 222334444444444444444444444444332 2333444444444444444444444444444331
Q ss_pred ----------------------------CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 239 ----------------------------IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 239 ----------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.+.+..++..+...+...|++++|.++|+++.+..|.
T Consensus 805 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 805 VVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 1122334445555566666666666666666666555
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=9.7e-19 Score=149.87 Aligned_cols=265 Identities=9% Similarity=0.043 Sum_probs=130.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
+.+....|++++|...|+++...++..+.++..+...+.+.|++++|...+++..... +.+...+..+..++...|+++
T Consensus 83 ~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 83 VISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChH
Confidence 3444455666666666666655554444555555555566666666666666555431 223344445555555555555
Q ss_pred HHHHHHHHHHhcCC---------------------------------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 86 QLLIFIEEVVQIAS---------------------------------PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 86 ~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
+|...++.+..... .++......+...+...|++++|...+++..+.
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555555544331 122222222333444444444444444444433
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH
Q 023133 133 KCKPDLITYNIVLDILGRVGRVND----MLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208 (287)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 208 (287)
. +.+...+..+...+...|++++ |...|+...+.... +...+..+...+...|++++|...+++..+.. +.+.
T Consensus 242 ~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~ 318 (656)
T PRK15174 242 G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLP 318 (656)
T ss_pred C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 2 2233344444445555555543 45555555443221 34445555555555555555555555555442 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch-HhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI-YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
..+..+..++.+.|++++|...++++.+. .|+. ..+..+..++...|++++|.+.|+++.+..|+.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 34444555555556666665555555543 2332 222223444555566666666666655555544
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=7.1e-19 Score=150.70 Aligned_cols=266 Identities=9% Similarity=0.026 Sum_probs=175.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
++..+.+.|++++|..+++......+.++.++..++.+....|+++.|+..++++.... +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 56678899999999999999999988877788888888889999999999999999763 34567788888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+
T Consensus 127 ~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 127 ATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 99999999999875 5677888889999999999999999998876553 1222233222 2356667777777777666
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCC
Q 023133 165 KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE----SLRLFNDMKQQQIR 240 (287)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~ 240 (287)
.+....++...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++ |...|++..+.. +
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 554322233333334445555555555555555555432 2233344444444555555443 444444444321 1
Q ss_pred cchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
.+...+..+...+...|++++|...++++....|+.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 223344444444444444444444444444444443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-18 Score=140.00 Aligned_cols=270 Identities=12% Similarity=0.104 Sum_probs=235.2
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFI 79 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 79 (287)
.|+.|...+-..|+...|+.-|++..+.++.-..+|..|...|...+.+++|+..|.+.... .|+ ...+..+...|.
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYY 297 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEe
Confidence 36778888899999999999999998887655589999999999999999999999998764 454 556777888889
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLN 159 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 159 (287)
..|..+.|+..+++.++.. |.-...|+.|..++...|++.+|+..|.+..... +....+.+.|...|...|.+++|..
T Consensus 298 eqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred ccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHH
Confidence 9999999999999999886 5567899999999999999999999999988764 3345688999999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 160 EFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL-LTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
+|....+.... -....+.|...|.+.|++++|...|++.+.. .|+. ..|+.+...|-..|+.+.|.+.+.+.+..
T Consensus 376 ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~- 451 (966)
T KOG4626|consen 376 LYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI- 451 (966)
T ss_pred HHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc-
Confidence 99998875322 3467899999999999999999999998865 6764 58999999999999999999999999874
Q ss_pred CCcc-hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 239 IRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 239 ~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
.|. ...++.|...|..+|++.+|..-|++..+..||.|..
T Consensus 452 -nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 452 -NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred -CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 565 4689999999999999999999999999999998863
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=1e-16 Score=137.55 Aligned_cols=190 Identities=13% Similarity=0.045 Sum_probs=146.6
Q ss_pred CChHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIA--SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD-LITYNIVLDILGRVGRVNDML 158 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~ 158 (287)
+++++|.+.|+...+.+ .+.....++.+...+...|++++|...|++..+. .|+ ...|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 34556666666665543 1234456777777788888899999888888765 344 557778888888899999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
..|+...+.... +...|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.
T Consensus 386 ~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 999888776432 56788888888889999999999999888764 345667778888888999999999999988864
Q ss_pred CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
.+.+...+..+...+...|++++|.+.|++.....|..
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 24456788888888999999999999999988877754
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=5.4e-17 Score=139.28 Aligned_cols=258 Identities=12% Similarity=0.011 Sum_probs=210.2
Q ss_pred cCChhHHHHHHHHHhhcCCC-Cc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChHHH
Q 023133 12 AGNVSAAVRLLQSLRDKNIF-LP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCTQL 87 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 87 (287)
.+++++|.+.|+.....+.. |. ..|..+...+...|++++|+..+++.+.. .|+ ...|..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 36899999999999876532 22 67888889999999999999999999875 344 56788888899999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
...++++++.. +.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998876 5678899999999999999999999999998774 345667888889999999999999999999875
Q ss_pred CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 023133 168 GVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL------TYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 241 (287)
.. .+...++.+...+...|++++|...|++..+.....+.. .++.....+...|++++|.+++++..+.. +.
T Consensus 463 ~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~ 540 (615)
T TIGR00990 463 FP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE 540 (615)
T ss_pred CC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC
Confidence 42 256788999999999999999999999988753111111 12222333445799999999999988753 23
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
+...+..+...+.+.|++++|.++|+++.+..+.
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 4457888999999999999999999999777553
No 16
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=6.3e-19 Score=136.83 Aligned_cols=260 Identities=14% Similarity=0.152 Sum_probs=113.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcC-CCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKN-IFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
+...+.+.|++++|+++++...... +..+ ..|..+...+...++++.|...++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 4567788999999999996654443 2233 67777888888899999999999999876533 55667777776 7889
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK-CKPDLITYNIVLDILGRVGRVNDMLNEF 161 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 161 (287)
++++|.++++...+.. ++...+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|++++|.+.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998876653 556677888899999999999999999976532 2456778888999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 023133 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 241 (287)
++..+.... |......++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|..+|++..+.. +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 999887533 57788889999999999999999998887653 4555678889999999999999999999998752 45
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
|......+.+++...|+.++|.++.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 888899999999999999999999988743
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=1.1e-15 Score=139.41 Aligned_cols=267 Identities=13% Similarity=0.062 Sum_probs=193.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHH------------
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTN------------ 73 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------ 73 (287)
...+.+.|++++|+..|++.....+....++..+...+...|++++|++.|++.++... .+...+..
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHH
Confidence 34677899999999999999988765557788889999999999999999999886532 22222222
Q ss_pred ------------------------------HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 023133 74 ------------------------------FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123 (287)
Q Consensus 74 ------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 123 (287)
+...+...|++++|.+.+++.++.. |.+..++..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2233446789999999999988876 556778888899999999999999
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------------
Q 023133 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA------------------------------------ 167 (287)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------------------------ 167 (287)
..++++.+.. +.+...+..+...+...+++++|...++.+...
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999887653 223333333333334445555554444332110
Q ss_pred ---CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchH
Q 023133 168 ---GVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244 (287)
Q Consensus 168 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 244 (287)
..+++...+..+...+.+.|+.++|...|++..+.. +.+...+..++..|...|++++|.+.++.+.+.. +.+..
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 012344566677788888899999999999888764 4467788888889999999999999999887642 23455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
.+..+..++...|++++|.++++++....|+.+
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 667777888889999999999999887766544
No 18
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=4.9e-15 Score=120.27 Aligned_cols=251 Identities=14% Similarity=0.069 Sum_probs=183.2
Q ss_pred cCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH--HHHHHHhccCChHHHHH
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYT--NFARAFIMTDDCTQLLI 89 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 89 (287)
.|+++.|.+.+....+....|.-.|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 589999998888876654434344544455668889999999999998764 45543332 33567788899999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---------------------------------
Q 023133 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP--------------------------------- 136 (287)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------------------- 136 (287)
.++++.+.. |.+..+...+...|.+.|++++|.+++..+.+.+..+
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998887 6678888899999999999999998888887654321
Q ss_pred --------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH
Q 023133 137 --------DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208 (287)
Q Consensus 137 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 208 (287)
+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+.. +-|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 1222334455666778888888888777664 334321 22333445577888888888777653 3455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
.....+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++....
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56777888888888888888888888874 688888888888888888888888888887654
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.77 E-value=1.6e-16 Score=127.77 Aligned_cols=268 Identities=16% Similarity=0.176 Sum_probs=179.4
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH-HHHHHHh
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYT-NFARAFI 79 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 79 (287)
+|+.+...+-..|++++|+.+++.+.+..+..-++|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHH
Confidence 36778899999999999999999999887655589999999999999999999999888763 44433222 1222233
Q ss_pred cc----------------------------------CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 023133 80 MT----------------------------------DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLI 125 (287)
Q Consensus 80 ~~----------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 125 (287)
.. |+...|++.|++..+.. |.-...|-.|...|...+.++.|...
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~ 274 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSC 274 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHH
Confidence 33 44444555555444443 22334455555555555555555555
Q ss_pred HHHHhcCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCC
Q 023133 126 FDHIKGLKCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI 204 (287)
Q Consensus 126 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 204 (287)
|.+.... .| ....+..+...|...|..+-|+..+++..+.... -...|+.|..++-..|+..+|.+.|.+.+...
T Consensus 275 Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 275 YLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 5554433 23 2334555555566667777777777776664322 24577777777777788888888887777652
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
+-...+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...|+++.+..|...
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fA 422 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFA 422 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHH
Confidence 223446677777888888888888888777763 344 45677788888888888888888888888777554
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=6.4e-15 Score=134.54 Aligned_cols=260 Identities=12% Similarity=0.034 Sum_probs=207.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCC
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDD 83 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (287)
.+...+...|++++|++.|++..+.++..+..+..+...+.+.|++++|...++++.+.. +.+...+..+...+...++
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~ 544 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDR 544 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCC
Confidence 355667789999999999999999887666788899999999999999999999998653 2345555555556778899
Q ss_pred hHHHHHHHHHHHhcCCCCcHH---------HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCH
Q 023133 84 CTQLLIFIEEVVQIASPESII---------VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRV 154 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (287)
.++|...++.+......++.. .+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++
T Consensus 545 ~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~ 619 (1157)
T PRK11447 545 DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDY 619 (1157)
T ss_pred HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCH
Confidence 999999998765432222221 223456778899999999999882 145666778889999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
++|+..|+...+.... +...+..+...+...|+.++|.+.++.+.+.. +.+......+..++...|++++|.++++.+
T Consensus 620 ~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~a 697 (1157)
T PRK11447 620 AAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRL 697 (1157)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999887543 67889999999999999999999999888653 334566777888999999999999999999
Q ss_pred HhCCC--Cc---chHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 235 KQQQI--RP---SIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 235 ~~~~~--~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
.+... .| +...+..+...+...|++++|.+.|+++..
T Consensus 698 l~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 698 IPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 86521 12 234566678888999999999999999964
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=3.2e-14 Score=124.70 Aligned_cols=115 Identities=10% Similarity=0.051 Sum_probs=66.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
..+...+...|++++|.++|++.....+..+..+..++..+...|++++|+..+++..+.. +.+.. +..+..++...|
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCC
Confidence 4455566666777777777776666554444555566666666667777776666666542 22334 555566666666
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 120 (287)
+.++|+..++++.+.. |.+...+..+..++...+..+
T Consensus 131 ~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 131 RHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 6666666666666654 333344444444444444433
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=9.7e-18 Score=130.17 Aligned_cols=236 Identities=13% Similarity=0.075 Sum_probs=107.5
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVSSRTL-SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (287)
.+...+.+.|++++|++++.+......+| +...|..+...+...++++.|.+.++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 55788889999999999997665544234 44455556667778899999999999999876 4467778888877 789
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCchHHHHHH
Q 023133 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG-VVPDFISYNTLLNNLRKIRRLDLCLIY 195 (287)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 195 (287)
+++++|.+++....+. .++...+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999877654 3566778888899999999999999999987543 345777888899999999999999999
Q ss_pred HHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 196 FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
+++..+.. +.|......++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|+.+|++.....|+
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 99999873 3357788889999999999999999999988753 566778889999999999999999999999999887
Q ss_pred CCCh
Q 023133 276 LAGP 279 (287)
Q Consensus 276 ~~~~ 279 (287)
+|..
T Consensus 247 d~~~ 250 (280)
T PF13429_consen 247 DPLW 250 (280)
T ss_dssp -HHH
T ss_pred cccc
Confidence 7653
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.75 E-value=3.3e-14 Score=116.05 Aligned_cols=256 Identities=11% Similarity=-0.017 Sum_probs=163.1
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIF 90 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 90 (287)
..|+++.|.+.+.+..+..+.|...+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 46778888887777766654443444555666677788888888877776543222222333345666777788888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----------------------------------
Q 023133 91 IEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP---------------------------------- 136 (287)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------- 136 (287)
++.+.+.. |.+..++..+...+...|++++|.+.+..+.+.++.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 87777775 5566677777777778888877777777766554221
Q ss_pred -------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCchHHHHHHHHHHhhCCCcC
Q 023133 137 -------DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS---YNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206 (287)
Q Consensus 137 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 206 (287)
+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.++...+.. +-
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~ 331 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DD 331 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CC
Confidence 33334444555666777777777777776653 23221 1111122233456667777776666541 22
Q ss_pred CH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 023133 207 DL--LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 207 ~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (287)
|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 44556777788888888888888853333346777777788888888888888888888763
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=2.7e-14 Score=125.15 Aligned_cols=202 Identities=10% Similarity=-0.001 Sum_probs=131.0
Q ss_pred HhccCChHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-----HhhHHHHHHHHHhc
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASP-ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD-----LITYNIVLDILGRV 151 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~ 151 (287)
+...+++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+..|+++.+.. |. ......+..++...
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhc
Confidence 34556777777777777666522 22 122224566777777777777777766542 22 23344555566777
Q ss_pred CCHHHHHHHHHHHHHcCC-----------CCC---hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHH
Q 023133 152 GRVNDMLNEFASMKEAGV-----------VPD---FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDS 217 (287)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 217 (287)
|++++|..+++.+..... .|+ ...+..+...+...|+.++|.+.++++.... +.+...+..+...
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 777877777777765421 122 1234455666777778888888877776653 4455667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHhh
Q 023133 218 FGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFKR 284 (287)
Q Consensus 218 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 284 (287)
+...|++++|++.+++..+.. +-+...+...+..+...|++++|..+++++.+..|+++....+.+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 778888888888888777642 223556666666777788888888888888888888777665544
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.74 E-value=3.6e-14 Score=125.30 Aligned_cols=236 Identities=10% Similarity=-0.036 Sum_probs=188.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..|..+..++.. +++++|+..+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 678888888876 7888899988888765 456554444555567899999999999987665 34445566778888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
.+.|++++|...+++..+.. ++....+..+.......|++++|...+++..+.. |+...+..+..++.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998764 2233333334444556699999999999998764 56788999999999999999999
Q ss_pred HHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 194 IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
..+++..+.. +.+...++.+..++...|++++|+..+++..+.. +-+...+..+..++...|++++|...|+++....
T Consensus 630 ~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 630 SDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999998874 4466778888889999999999999999998752 3456788899999999999999999999999998
Q ss_pred CCCCCh
Q 023133 274 SDLAGP 279 (287)
Q Consensus 274 ~~~~~~ 279 (287)
|+....
T Consensus 708 P~~a~i 713 (987)
T PRK09782 708 DNQALI 713 (987)
T ss_pred CCCchh
Confidence 877653
No 26
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.5e-15 Score=121.60 Aligned_cols=209 Identities=13% Similarity=0.132 Sum_probs=172.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHH
Q 023133 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144 (287)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (287)
+-.+.+|..+.++|+-+++.+.|++.|++.++.+ +....+|+.+..-+....++|.|...|+...... +.+-..|.-+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGl 495 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGL 495 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhh
Confidence 4457899999999999999999999999999886 5688999999999999999999999999887431 1122355567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH
Q 023133 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224 (287)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (287)
.-.|.+.++++.|.-.|+...+-+.. +.+....+...+-+.|+.++|++++++..... +-|+..--.-+..+...+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcch
Confidence 78899999999999999999987654 66777888888999999999999999998765 33554444556677788999
Q ss_pred HHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 225 EESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
++|+..++++++. ++-+..+|..+...|.+.|+.+.|+.-|.-+.+..|....
T Consensus 574 ~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 574 VEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 9999999999985 3444567888889999999999999999999888876544
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=3.5e-14 Score=105.83 Aligned_cols=261 Identities=11% Similarity=0.027 Sum_probs=190.4
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhccCChHH
Q 023133 10 CKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS---SDCYTNFARAFIMTDDCTQ 86 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 86 (287)
.-..+.++|.++|-+|.+.++...++...|.+.|.+.|..++|+++.+.+.++.--+. ......|.+-|...|-++.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3467889999999999987654448888999999999999999999999886532221 1244557778889999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHH
Q 023133 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI----TYNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+.+-.+... .|.-+...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998876 4556778889999999999999999999888765443322 34555666666778889999998
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 242 (287)
+..+.+.+ .+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.++...++..+.+. .+.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g 281 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTG 281 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCC
Confidence 88776544 445555677788889999999999999888754444567778888999999999988888888764 233
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 243 IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
...-..+...-....-.+.|..++.+-.+..|
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC
Confidence 33333333333333334455554444444433
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=5e-14 Score=124.45 Aligned_cols=264 Identities=8% Similarity=-0.072 Sum_probs=207.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
|..+...+.. |+.++|+..|.+.....+. ......+...+.+.|++++|...++++... +|+...+..+..++.+.
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~ 555 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPD-AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHC
Confidence 3445555655 8899999988888776643 123333445556899999999999997653 45555566777888999
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 161 (287)
|++++|...+++..+.. +.....+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998876 344444444445555669999999999999877 577888999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 023133 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 241 (287)
++..+.... +...++.+...+...|+.++|...+++..+.. +-+...+..+..++...|++++|...+++..+. .|
T Consensus 633 ~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P 708 (987)
T PRK09782 633 RAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--ID 708 (987)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 999987543 66788888889999999999999999998864 446678889999999999999999999999975 45
Q ss_pred ch-HhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 242 SI-YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 242 ~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
+. .+.........+..+++.|.+-+++.....|+.
T Consensus 709 ~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 709 NQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred CCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 44 455556666777778888888888876665543
No 29
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=1.9e-13 Score=104.66 Aligned_cols=254 Identities=15% Similarity=0.088 Sum_probs=191.2
Q ss_pred cCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFI 91 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 91 (287)
.|++.+|+++..+-.+.+..|.-.|..-+.+.-+.|+.+.+-.++.+.-+..-.++....-...+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 79999999999998888877767777778888899999999999999987644556666667778888999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh-------hHHHHHH------------------
Q 023133 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI-------TYNIVLD------------------ 146 (287)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~------------------ 146 (287)
+++.+.+ +..+.+......+|.+.|++.....+...+.+.|.-.+.. +|+.++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9999987 6778899999999999999999999999998887544432 3443333
Q ss_pred ----------------HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHH
Q 023133 147 ----------------ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210 (287)
Q Consensus 147 ----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 210 (287)
-+.+.|+.++|.++..+..+.+..|+ .. ..-.+.+-++...-.+..+.-.+.. +.++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence 34445555555555555554444333 11 1112333444444444444333221 234467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
+.+|...|.+.+.+.+|.+.|+...+. .|+..+|..+.+++.+.|+..+|.++.++.....
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 788999999999999999999988874 7999999999999999999999999999986543
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=8.7e-14 Score=107.63 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=118.0
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (287)
+|..||.++|+-...+.|.+++++......... ++||.+|.+-.-. ...+++.+|....+.||..|+|.++++..
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 578899999999999999999999888777666 8888888764332 23678899999899999999999999999
Q ss_pred ccCChHH----HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHh----cCCCCC----CHhhHHHHHH
Q 023133 80 MTDDCTQ----LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK-ALLIFDHIK----GLKCKP----DLITYNIVLD 146 (287)
Q Consensus 80 ~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~----~~~~~~----~~~~~~~l~~ 146 (287)
+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |..++.++. ...++| |...|...+.
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 9998765 45677788899999999999999999988888754 333333332 222222 3344566666
Q ss_pred HHHhcCCHHHHHHHHHH
Q 023133 147 ILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~ 163 (287)
.|.+..+.+-|..+-.-
T Consensus 365 Ic~~l~d~~LA~~v~~l 381 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGL 381 (625)
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 66666666666554433
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.5e-14 Score=110.58 Aligned_cols=256 Identities=11% Similarity=0.143 Sum_probs=192.0
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
.-...++|+|+.+|+++.+.++..- ++|..++-. ++.+.. +..+.+-.-.--+..+.|+..+.+-|+-.++.+
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--HhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 3345667777777777777665433 455555433 222111 111211111112344566777777788888999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
.|..+|+..++.+ |....+|+.+..-|....+...|.+-+++..+.. +.|-..|-.|.++|.-.+.+.-|+-+|++..
T Consensus 348 KAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 9999999999987 5677899999999999999999999999998875 5688899999999999999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CC
Q 023133 166 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ----Q-IR 240 (287)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~ 240 (287)
+.... |...|.+|..+|.+.++.++|+..|.+....| ..+...+..|...|-+.++..+|...|.+.++. | +.
T Consensus 426 ~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~ 503 (559)
T KOG1155|consen 426 ELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEID 503 (559)
T ss_pred hcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccc
Confidence 86443 88999999999999999999999999999876 446688999999999999999999998887752 2 22
Q ss_pred c-chHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 241 P-SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 241 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
| ......-|..-+.+.+++++|..+-.....-
T Consensus 504 ~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 504 DETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 3 2333344666677888888888776666444
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=1.1e-13 Score=104.59 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (287)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455556666777777777777777776654 4455666667777777777777777777766553 3344566666777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
+...|++++|...++........| ....+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776542211 33455666777777888888888887777653 3345567777777888888888
Q ss_pred HHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
|...+++..+. .+.+...+..++..+...|+.++|..+.+.+....
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 88888887765 24455666667777777888888888877776543
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.69 E-value=4.3e-13 Score=116.40 Aligned_cols=260 Identities=12% Similarity=0.067 Sum_probs=159.2
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQL 87 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 87 (287)
..+.|+++.|+..|++..+.++..+ ..+ .++..+...|+.++|+..+++.... .+........+...+...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4577777777777777777766543 333 6666677777777777777777611 122222333334566667777777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
+++++++.+.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 77777777765 344566666677777777777777777777655 455444433333333344554566666666554
Q ss_pred CCCCChhHHHHH--------------------------------------------------------------------
Q 023133 168 GVVPDFISYNTL-------------------------------------------------------------------- 179 (287)
Q Consensus 168 ~~~~~~~~~~~l-------------------------------------------------------------------- 179 (287)
... +...+..+
T Consensus 199 ~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 311 11111111
Q ss_pred ---------------------HHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 180 ---------------------LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 180 ---------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
+-++...+++.++++.|+.+...+.+....+-..+.++|...+.+++|..++..+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 22344556666666666666655544334455667778888888888888888876432
Q ss_pred -----CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 239 -----IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 239 -----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
..++......|..++..++++++|..+++++.+..|
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 122333456777888888888888888888876545
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.68 E-value=1.5e-13 Score=116.36 Aligned_cols=248 Identities=11% Similarity=0.035 Sum_probs=151.5
Q ss_pred ChhHHHHHHHHHhhcCCCCchhHHHHHHHHhh---------cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 14 NVSAAVRLLQSLRDKNIFLPNAYNCVLVASAE---------TNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
.+++|...|++..+.++.....|..+..++.. .+++++|...+++..+.. +-+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 35677777777777765544556555554432 234677777777777653 23556666666777777888
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL-ITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
++|...++++.+.+ |.+...+..+...+...|++++|...+++..+.. |+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888877776 4556677777777778888888888888777663 332 2333344455667778888888777
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCc
Q 023133 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQ-QIRP 241 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~ 241 (287)
+.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|...| ++|...++.+.+. ...+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765432213444566666777778888888887776544 333 233444555556666 4666666666543 1122
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
....+ +...+.-.|+.+.+..+ +++.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 22222 33334445665555555 666544
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.67 E-value=1e-12 Score=114.09 Aligned_cols=270 Identities=16% Similarity=0.147 Sum_probs=155.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
...|...|++++|+++|+++.+..+..+..+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 457777899999999999998888777767777788888888888888888888764 455555544444444455665
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH---------------------------------------
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF--------------------------------------- 126 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------------------------------------- 126 (287)
+|++.++++.+.. |.+...+..+..++.+.|-...|.++.
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6888888887765 344444444444444443332222221
Q ss_pred ---------HHHhc-CCCCCCHh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHH
Q 023133 127 ---------DHIKG-LKCKPDLI-TY----NIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191 (287)
Q Consensus 127 ---------~~~~~-~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (287)
+.+.. .+-.|... .| -=.+-++...|+..++++.|+.|...+.+....+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 22111 01112211 11 11234455666666666666666666544344455566666666666666
Q ss_pred HHHHHHHHhhCC-----CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------Cc--ch-HhHHHHHHH
Q 023133 192 CLIYFREMGESG-----IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI-----------RP--SI-YVYRSLIDN 252 (287)
Q Consensus 192 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~--~~-~~~~~li~~ 252 (287)
|..+++.+.... ..++......|..+|...+++++|..+++++.+... .| |- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 666666664321 122333345566666666666666666666655210 11 11 223334455
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 253 LKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
+...|+..+|.+.++++....|.++.
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~ 451 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQN 451 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 55666666666666666666665543
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=3.4e-14 Score=115.18 Aligned_cols=259 Identities=12% Similarity=0.091 Sum_probs=200.7
Q ss_pred CChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhccCChHHHHHH
Q 023133 13 GNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSR--TLSSDCYTNFARAFIMTDDCTQLLIF 90 (287)
Q Consensus 13 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 90 (287)
-+..+|+..|..++++......+...+..+|.+.+++++|.++|+.+.+... .-+..+|...+--+ .+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHHH
Confidence 3568899999996665543337788899999999999999999999976521 11345565544222 11 222333
Q ss_pred H-HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 023133 91 I-EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGV 169 (287)
Q Consensus 91 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 169 (287)
+ +.+.+.. +..+.+|.++..+|.-.++.+.|++.|++..+.. +....+|+.+..-+.....+|.|...|+.......
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 3 4445554 6778999999999999999999999999999874 23778999998889999999999999999876532
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHH
Q 023133 170 VPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSL 249 (287)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (287)
. +-.+|.-+.-.|.+.++++.|.-.|++..+.+ +-+.+....+...+-+.|+.++|+++++++...+ +.|+..--.-
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 34556667788999999999999999999875 4466777888889999999999999999998653 3355555556
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCChh
Q 023133 250 IDNLKKMGKVDLAMTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (287)
+..+...+++++|+..+++++...|+....-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~ 594 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVF 594 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHH
Confidence 7778889999999999999999999876543
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=1.6e-12 Score=97.07 Aligned_cols=263 Identities=12% Similarity=0.107 Sum_probs=206.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (287)
+|.+.|-+.|..|.|+++...+.++...+. .+...|..-|...|-+|.|..+|..+.+.+ ..-......|+..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 577889999999999999999877644433 356677888899999999999999998754 334567778999999
Q ss_pred ccCChHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPES----IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN 155 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (287)
...+|++|+..-+++.+.+..+. ...|.-+...+....+.+.|...+.+..+.+ +..+..--.+.+.....|+++
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchH
Confidence 99999999999999988875443 2456777788888899999999999988764 334445556778889999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+.. ++...-..+...-....-.+.|...+.+-.
T Consensus 232 ~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 232 KAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 999999999998765556778889999999999999999999998873 444444455555555555677777666666
Q ss_pred hCCCCcchHhHHHHHHHHHh---cCChHHHHHHHHHHhhc
Q 023133 236 QQQIRPSIYVYRSLIDNLKK---MGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 236 ~~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 272 (287)
.+ .|+...+..+++.... -|...+.+..++.|...
T Consensus 310 ~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 310 RR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred hh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 54 6999999999987653 35577778888888543
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=4.4e-13 Score=108.97 Aligned_cols=221 Identities=13% Similarity=0.037 Sum_probs=145.6
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhc
Q 023133 8 KLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS-------DCYTNFARAFIM 80 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 80 (287)
.+...|++++|...++++.+.++..+.++..+...|.+.|+++.|.+++..+.+.+..++. .+|..++.....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554444443344444555555555555555555555444322111 011122222222
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
..+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+... .++.+....++.+++.+.
T Consensus 242 ~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred hcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHH
Confidence 23333333333333222 2345667777888999999999999999998874 455532 234444566999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
.+...+.... |...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 317 ~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 317 LRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999887543 6677889999999999999999999999986 79999999999999999999999999998764
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.65 E-value=4.7e-13 Score=101.10 Aligned_cols=200 Identities=10% Similarity=-0.001 Sum_probs=168.3
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 678889999999999999999999998753 3456778888899999999999999999998876 45677888899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCK-PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 192 (287)
...|++++|.+.+++..+.... .....+..+..++...|++++|...+.+..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998764222 23456777888899999999999999999876433 566788899999999999999
Q ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998876 2456677778888899999999999998887653
No 40
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.1e-13 Score=103.50 Aligned_cols=237 Identities=13% Similarity=0.045 Sum_probs=205.0
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 023133 37 NCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116 (287)
Q Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (287)
+.+..+|.+.|-+.+|.+.++.-++. .|-+.||..|.++|.+..++..|+.++.+-++. .|-++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999998875 677889999999999999999999999998876 367777777888889999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHH
Q 023133 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYF 196 (287)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 196 (287)
++.++|.++|+...+.. +.+++...++...|.-.++++-|+.+++++.+.|+. +...|+.+.-+|.-.+++|-+...|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999998764 457778888888999999999999999999999987 8899999999999999999999999
Q ss_pred HHHhhCCCcCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 197 REMGESGIKPDL--LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 197 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
.+....-..|+. ..|-.|.......||+..|.+.|+-....+ ..+...++.|.-.-.+.|++++|..++..+....|
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 998765444543 356667778888999999999999988763 44567889898888999999999999999999888
Q ss_pred CCCCh
Q 023133 275 DLAGP 279 (287)
Q Consensus 275 ~~~~~ 279 (287)
+-..+
T Consensus 461 ~m~E~ 465 (478)
T KOG1129|consen 461 DMAEV 465 (478)
T ss_pred ccccc
Confidence 76544
No 41
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=9.7e-13 Score=101.96 Aligned_cols=235 Identities=14% Similarity=0.254 Sum_probs=188.9
Q ss_pred chhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 023133 33 PNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFA 112 (287)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (287)
+.++..+|.++++....++|.+++++......+.+..+||.+|.+-+-..+ .+++.+|......||..++|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 368999999999999999999999999988889999999999877553322 6788999999999999999999999
Q ss_pred HHhcCCHHHH----HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc----CCCC----ChhHHHHH
Q 023133 113 FAKSRQIEKA----LLIFDHIKGLKCKPDLITYNIVLDILGRVGRVND-MLNEFASMKEA----GVVP----DFISYNTL 179 (287)
Q Consensus 113 ~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~~~----~~~~~~~l 179 (287)
..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .++| |...|...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 9999987754 5677899999999999999999999999888755 44455554432 2222 34567777
Q ss_pred HHHHHhcCchHHHHHHHHHHhhC----CCcCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHH
Q 023133 180 LNNLRKIRRLDLCLIYFREMGES----GIKPDL---LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDN 252 (287)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 252 (287)
+..|.+..+.+-|.++..-+... -+.|+. .-|..+....++....+.....|+.|+-.-.-|+..+...++.+
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 88888999999998877666432 123332 24667777888888999999999999987778888999999999
Q ss_pred HHhcCChHHHHHHHHHHhh
Q 023133 253 LKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~ 271 (287)
....|.++-.-+++..+..
T Consensus 443 ~~v~~~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKE 461 (625)
T ss_pred HhhcCcchhHHHHHHHHHH
Confidence 8888888887777766643
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=9.7e-12 Score=104.42 Aligned_cols=269 Identities=14% Similarity=0.163 Sum_probs=202.0
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLL 88 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 88 (287)
+.-.|++++|.+++.++.+.++..+..|..|...|-+.|+.+++...+--.-..+ +-|...|..+.....+.|++.+|.
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 3344999999999999999998888999999999999999999987765544332 346688888888889999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHH
Q 023133 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITY----NIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
-.|.++++.. |++...+-.-+..|-+.|+...|...|.++.....+.|..-+ -..+..+...++-+.|.+.++..
T Consensus 228 ~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 228 YCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999987 566666666778899999999999999999876422222222 23345566666667787777776
Q ss_pred HHc-CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh------------------------------------------
Q 023133 165 KEA-GVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE------------------------------------------ 201 (287)
Q Consensus 165 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------------------ 201 (287)
... +-..+...++.++..+.+...++.|......+..
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence 552 1223445566666666666666666666555443
Q ss_pred -------------------CCC--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChH
Q 023133 202 -------------------SGI--KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVD 260 (287)
Q Consensus 202 -------------------~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (287)
..+ .-+...|.-+..+|.+.|++.+|+.+|..+......-+...|..+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 110 11233455677889999999999999999987755556778999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCh
Q 023133 261 LAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~ 279 (287)
+|.+.|+++....|++.+.
T Consensus 467 ~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 467 EAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred HHHHHHHHHHhcCCCchhh
Confidence 9999999999998887764
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.3e-12 Score=100.68 Aligned_cols=256 Identities=13% Similarity=0.128 Sum_probs=191.3
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhccCC
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRT--LSSDCYTNFARAFIMTDD 83 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 83 (287)
.++....+.+++..-.+.....|.... -.-+....+.-...+++.|+.+|+++.+...- -|.++|..++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444455566666666666666655443 23333344455667788888888887765211 134555554433222111
Q ss_pred hHHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 023133 84 CTQLLIFIEE-VVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 84 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
+.++-+ ....+ +--+.|+..+.+-|.-.++-++|...|++..+.+ +.....|+.+..-|....+...|.+-++
T Consensus 315 ----Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 ----LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 122211 11221 3345567778888888999999999999999886 4566789999999999999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 242 (287)
...+-... |-..|-.|.++|.-.+.+.-|.-+|++..+.. +-|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 99997654 88999999999999999999999999998874 5678899999999999999999999999999876 336
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 243 IYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
...+..+.+.|-+.++.++|...|++-.+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68899999999999999999999988765
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.1e-12 Score=107.06 Aligned_cols=228 Identities=9% Similarity=-0.093 Sum_probs=152.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hccC
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAF---IMTD 82 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~ 82 (287)
...+...|+++.|...++.+.+..+..+.++..+...+.+.|+++.|.+.+..+.+.+..++......-..++ ...+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4445556777777777777777665555666677777777777777777777777665332221111111111 2222
Q ss_pred ChHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh---HHHHHHHHHhcCCHHH
Q 023133 83 DCTQLLIFIEEVVQIAS---PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT---YNIVLDILGRVGRVND 156 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 156 (287)
..+...+.+..+.+... +.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH
Confidence 22222233333333221 236778888889999999999999999999876 355442 1222223345678899
Q ss_pred HHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 157 MLNEFASMKEAGVVPDF--ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 157 a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
+.+.++...+.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 318 ~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888765322 34 5667889999999999999999996444444799999999999999999999999999986
Q ss_pred Hh
Q 023133 235 KQ 236 (287)
Q Consensus 235 ~~ 236 (287)
..
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 53
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.59 E-value=2.3e-12 Score=109.13 Aligned_cols=228 Identities=10% Similarity=0.028 Sum_probs=170.0
Q ss_pred hhHHHHHHHHhh-----cCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHhcC
Q 023133 34 NAYNCVLVASAE-----TNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFI---------MTDDCTQLLIFIEEVVQIA 98 (287)
Q Consensus 34 ~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~ 98 (287)
.+|...+++... .+++++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+..
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 566666665422 23467999999999875 443 445555555443 2345889999999999987
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 023133 99 SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178 (287)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (287)
|.+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...+..
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 6778889899999999999999999999998875 345667888899999999999999999999887543 2233334
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhc
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKP-DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKM 256 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 256 (287)
++..+...|++++|...++++.+.. .| +...+..+..++...|+.++|...+.++... .|+ ....+.+...+...
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhcc
Confidence 4555667899999999999987653 34 4455777888899999999999999997754 344 33445555566777
Q ss_pred CChHHHHHHHHHHhh
Q 023133 257 GKVDLAMTIFEEMNS 271 (287)
Q Consensus 257 g~~~~a~~~~~~~~~ 271 (287)
| +.|...++.+.+
T Consensus 489 g--~~a~~~l~~ll~ 501 (553)
T PRK12370 489 S--ERALPTIREFLE 501 (553)
T ss_pred H--HHHHHHHHHHHH
Confidence 7 477777777754
No 46
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=8.8e-12 Score=89.02 Aligned_cols=212 Identities=12% Similarity=0.027 Sum_probs=181.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (287)
+..-|.-.|...|+...|..-+++.++.. |.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456678999999999999999999987 6778899999999999999999999999988774 346668888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 023133 150 RVGRVNDMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 228 (287)
..|++++|...|+.......-+ -..+|..+.-+..+.|+++.|...|++..+.. +-...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999988763211 34688888888899999999999999998874 334457778889999999999999
Q ss_pred HHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHhhh
Q 023133 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFKRK 285 (287)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 285 (287)
.+++.....+. ++..+....|..-.+.|+.+.+.++=.++.+.+|..+...+|...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~f~~~ 249 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQTFLAG 249 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHhHhcc
Confidence 99999888764 888888889999999999999999999999999998888877653
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=7.1e-12 Score=98.14 Aligned_cols=268 Identities=13% Similarity=0.134 Sum_probs=193.5
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHH-hh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 8 KLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVAS-AE-TNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~-~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
-|.++|+++.|++++.-+.+.+.... .+-+.|-..+ .+ -.++..|.+.-+...... ..+......-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 47799999999999998877765443 3333333332 22 336777777766665432 22333333333444567899
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
+.|.+.+++.+...-.-+...|| +.-.+-..|++++|+..|-++... +..+......+...|-...++..|++++-+.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999988766433334444 555677889999999998776432 1346667778888898999999999998776
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchH
Q 023133 165 KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244 (287)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 244 (287)
... ++.|+..++.|...|-+.|+-..|++++-+--.- ++-+..+...|..-|....-+++++.+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 554 4447788889999999999999998876553322 466788888888888888889999999988764 689999
Q ss_pred hHHHHHHHH-HhcCChHHHHHHHHHHhhcCCCCCChhhH
Q 023133 245 VYRSLIDNL-KKMGKVDLAMTIFEEMNSSLSDLAGPKDF 282 (287)
Q Consensus 245 ~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (287)
-|..++..| .+.|++..|+++|+.+.+.+|.+..--.|
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 998888765 46899999999999998888877654333
No 48
>PF13041 PPR_2: PPR repeat family
Probab=99.54 E-value=2.9e-14 Score=79.48 Aligned_cols=49 Identities=37% Similarity=0.704 Sum_probs=25.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 023133 136 PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184 (287)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (287)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=2e-12 Score=96.95 Aligned_cols=230 Identities=14% Similarity=0.072 Sum_probs=195.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
+.|...|.+.|-+.+|.+-|+...+..+.+ ++|..|-..|.+..++..|+.++.+-++. .+-+.....-+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~-dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-DTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch-hHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 457789999999999999999988776543 59999999999999999999999998864 3334444556778889999
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
+.++|.++++...+.. +.++.....+...|.-.++++-|+..|+++.+.|+ -+...|+.+.-+|.-.++++-++.-|+
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999999886 67778888888889999999999999999999995 588889999999999999999999999
Q ss_pred HHHHcCCCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 163 SMKEAGVVPD--FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 163 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
+....--.|+ ...|..+....+..|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9876544343 3467778888899999999999999988764 446678999998899999999999999988764
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=5e-11 Score=91.69 Aligned_cols=230 Identities=13% Similarity=0.049 Sum_probs=179.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH-------HHHHHHH
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD-------CYTNFAR 76 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~ 76 (287)
+........|+.+.|..-.+.+.+.++.++.......++|.+.|++.....++..+.+.+.--++. +|..+++
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888888777888888899999999999999999998887655543 5666676
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHH
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVND 156 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (287)
-....+..+.-...|+...+. ...++..-.+++.-+.++|+.++|.++..+..+.+..|. -...-.+.+.++.+.
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~ 312 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEP 312 (400)
T ss_pred HHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchH
Confidence 666666666666677766443 245666777888899999999999999999888765555 222334567778777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 157 MLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
-.+..+.-.+... -++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++...
T Consensus 313 l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 313 LIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhCC-CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777654422 24578899999999999999999999987776 79999999999999999999999999998774
Q ss_pred CCCCc
Q 023133 237 QQIRP 241 (287)
Q Consensus 237 ~~~~~ 241 (287)
.-..|
T Consensus 390 ~~~~~ 394 (400)
T COG3071 390 LTRQP 394 (400)
T ss_pred HhcCC
Confidence 43333
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.52 E-value=1.2e-10 Score=97.97 Aligned_cols=279 Identities=13% Similarity=0.143 Sum_probs=176.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
|..|...|-+.|+.+++...+-.....++.....|..+.....+.|+++.|.-.|.+.++.. +++...+-.-...|-+.
T Consensus 176 y~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 176 YYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKT 254 (895)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHh
Confidence 55666777777777777766655555554444667777777777777777777777766653 33444444455566666
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHhcCCHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVN----RIIFAFAKSRQIEKALLIFDHIKGL-KCKPDLITYNIVLDILGRVGRVND 156 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 156 (287)
|+...|..-|.++.....+.|..-+. ..+..+...++-+.|.+.++..... +-..+...++.++..+.+...++.
T Consensus 255 G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 255 GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHH
Confidence 66666666666666554322222111 2233344444445555555444331 112233344445555555444444
Q ss_pred HHHHHHHHH-------------------------------------------------------------HcC--CCCCh
Q 023133 157 MLNEFASMK-------------------------------------------------------------EAG--VVPDF 173 (287)
Q Consensus 157 a~~~~~~~~-------------------------------------------------------------~~~--~~~~~ 173 (287)
|......+. +.. +.-+.
T Consensus 335 ~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~ 414 (895)
T KOG2076|consen 335 ALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV 414 (895)
T ss_pred hhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH
Confidence 444443333 222 12234
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (287)
..|.-+..++...|++.+|..++..+......-+...|-.+..+|...|.+++|.+.|+..+... +-+...--.|...+
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~ 493 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLY 493 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHH
Confidence 55677788899999999999999999987555567789999999999999999999999999752 33455666677788
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCChhhH
Q 023133 254 KKMGKVDLAMTIFEEMNSSLSDLAGPKDF 282 (287)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (287)
-+.|+.++|.+.++.+....+.......|
T Consensus 494 ~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 494 QQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999987444333333333
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.52 E-value=4.9e-14 Score=78.55 Aligned_cols=49 Identities=43% Similarity=0.876 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHH
Q 023133 206 PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLK 254 (287)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (287)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.52 E-value=4.2e-11 Score=97.83 Aligned_cols=237 Identities=14% Similarity=0.142 Sum_probs=179.7
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHh-----c-CCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHhc-----C--C
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVS-----S-RTLSSD-CYTNFARAFIMTDDCTQLLIFIEEVVQI-----A--S 99 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 99 (287)
.+...+...|...|+++.|..++++.++. | ..|... +.+.+...|...+++.+|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 67778999999999999999999998765 1 123333 3445778888999999999999988643 2 2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC
Q 023133 100 PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL-----KC-KPDLI-TYNIVLDILGRVGRVNDMLNEFASMKEA---GV 169 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 169 (287)
+.-..+++.|..+|.+.|++++|...+++..+. |. .|.+. .++.+...+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 334567888889999999999998888766431 21 23333 3567788889999999999999886432 12
Q ss_pred CCC----hhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CC--cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 023133 170 VPD----FISYNTLLNNLRKIRRLDLCLIYFREMGES----GI--KP-DLLTYTALIDSFGRTGNIEESLRLFNDMKQQ- 237 (287)
Q Consensus 170 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 237 (287)
.++ ..+++.+...|...|++++|.+++++++.. +. .+ ....++.|...|.+.+++.+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 367899999999999999999999988642 11 12 2346788889999999999999988876532
Q ss_pred ---CC-Ccc-hHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 023133 238 ---QI-RPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 238 ---~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (287)
|. .|+ ..+|..|+..|...|+++.|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 21 233 4689999999999999999999998884
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=1.4e-10 Score=90.50 Aligned_cols=126 Identities=10% Similarity=-0.080 Sum_probs=62.0
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (287)
.|..+...+...|++++|...|++.++.. +.+...|+.+...+...|++++|...|++..+.. |.+..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 35555555555555555555555555432 2234455555555555555555555555555543 233445555555555
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 115 KSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
..|++++|.+.|++..+. .|+..........+...++.++|...|...
T Consensus 144 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 555555555555555543 232221111111223344555555555443
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=8e-11 Score=91.10 Aligned_cols=266 Identities=12% Similarity=0.036 Sum_probs=187.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCC
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDD 83 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (287)
++...+...|+.++|+..|++....++..-.........+.+.|+.++...+...+.... +.....|..-+.......+
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhh
Confidence 455667777777777777777766665433233333334456677777666666665431 2233334333444456677
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
+..|+.+-++.++.. +.+...+-.-..++...++.++|.-.|+...... +-+..+|.-|+.+|...|++.+|..+-+.
T Consensus 316 ~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 888888888877765 4566666666677888899999999998887663 35778999999999999999998877666
Q ss_pred HHHcCCCCChhHHHHHH-HHH-HhcCchHHHHHHHHHHhhCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 023133 164 MKEAGVVPDFISYNTLL-NNL-RKIRRLDLCLIYFREMGESGIKPDL-LTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 240 (287)
..+. +..+..+.+.+. ..+ -....-++|..+++.-... .|+- ...+.+...+...|..+.++.++++... ..
T Consensus 394 ~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~ 468 (564)
T KOG1174|consen 394 TIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IF 468 (564)
T ss_pred HHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hc
Confidence 5443 223555555442 222 2223346788888876654 5553 4677888899999999999999999886 47
Q ss_pred cchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
||...++.|.+.+...+.+.+|++.|..+.+..|.+.
T Consensus 469 ~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 469 PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 9999999999999999999999999999998888654
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=6.7e-11 Score=92.35 Aligned_cols=220 Identities=13% Similarity=0.043 Sum_probs=159.1
Q ss_pred cCChhHHHHHHHHHHHhc-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 023133 46 TNDIDLSFQILKDLLVSS-RTLS--SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA 122 (287)
Q Consensus 46 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 122 (287)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. |.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677788888887542 2222 3457778888999999999999999999986 56789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 123 LLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
...|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...++.++|...+.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999998764 2346678888889999999999999999998764 43322222233345567899999999776543
Q ss_pred CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--Cc-chHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 203 GIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ---QI--RP-SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
. .|+... ..+.. ...|+..++ +.+..+.+. .+ .| ....|..+...+...|++++|...|+++....|
T Consensus 195 ~-~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-CccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2 333222 22332 334555444 344444421 11 11 235788899999999999999999999998876
No 57
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.6e-10 Score=92.75 Aligned_cols=272 Identities=12% Similarity=0.051 Sum_probs=213.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
.+-+...+++.+..++++.+.+.++..+..+..-|.++.+.|+..+-.-+=.++.+. .|-.+.+|-++.--|.-.|+..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 345667889999999999999988877767777777888889888777777777664 3446778888887788889999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL-ITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
+|.+.|.+....+ +.=...|-.....|+-.|.-++|+..+....+. -|.. ..+--+.--|.+.++.+.|.++|.+.
T Consensus 330 eARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 330 EARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999887765 334567888999999999999999988776553 1221 12223444577889999999999998
Q ss_pred HHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC----C--CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 165 KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES----G--IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
..... .|+..++.+.-.....+.+.+|..+|+..+.. + ...-..+++.|.++|.+.+.+++|+..+++.+..
T Consensus 407 ~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l- 484 (611)
T KOG1173|consen 407 LAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL- 484 (611)
T ss_pred HhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-
Confidence 77533 36677788877777889999999999887621 1 1123457889999999999999999999999876
Q ss_pred CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 239 IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
.+.+..++.++.-.|...|+++.|.+.|.+.+...|++...+..+
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 466889999999999999999999999999999999886555443
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.4e-11 Score=102.91 Aligned_cols=273 Identities=12% Similarity=0.074 Sum_probs=182.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhc---CCCCc-------hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDK---NIFLP-------NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYT 72 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 72 (287)
|.+...+...|+++.|...|+..... ...++ .+-..+....-..++++.|.+.|....... +-=...|.
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHH
Confidence 44555555666666666666555443 00011 123334444455556666666666665542 11122333
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHh-
Q 023133 73 NFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK-CKPDLITYNIVLDILGR- 150 (287)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 150 (287)
.++......+...+|...++...... ..++.++..+...+.+...+..|.+-|....+.- ..+|..+.-.|...|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 33322223456666777776666654 4556666667777788888888877666654431 12455555555554432
Q ss_pred -----------cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH
Q 023133 151 -----------VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFG 219 (287)
Q Consensus 151 -----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (287)
.+..++|+.+|.+......+ |..+-+-+.-.++..|++.+|..+|.++.+... -...+|-.+.++|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHH
Confidence 24568899999988887544 777778888889999999999999999988752 34457888999999
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 220 RTGNIEESLRLFNDMKQQ-QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
..|++..|+++|+...+. .-..+..+.+.|..++.+.|.+.+|.+.+..+....|.++..
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSV 752 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchH
Confidence 999999999999987754 445577889999999999999999999999999999988763
No 59
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.48 E-value=1e-11 Score=95.65 Aligned_cols=262 Identities=14% Similarity=0.091 Sum_probs=182.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
++.+.-.|++..++.-.+ ....+.... .....+.+++...|+++.++ .+.... ..|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccch
Confidence 445567899999997776 333333223 56778889999999877644 344333 366666666666655554555
Q ss_pred HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASP-ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
+.+..-+++....... .+..+.......+...|++++|++++..- .+.......+.+|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666555554433333 33333334445677789999999988653 4567777888999999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 023133 164 MKEAGVVPDFISYNTLLNNLRK----IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 239 (287)
|.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+
T Consensus 157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 98753 33455556655544 34689999999998765 46788999999999999999999999999988754
Q ss_pred CcchHhHHHHHHHHHhcCCh-HHHHHHHHHHhhcCCCCCChhhHh
Q 023133 240 RPSIYVYRSLIDNLKKMGKV-DLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
+-+..+...++.+....|+. +.+.+++.++....|+.|-...+.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 44677888888888888888 678899999999999877655544
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=9.9e-10 Score=90.86 Aligned_cols=261 Identities=13% Similarity=0.109 Sum_probs=176.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH-HHHHHHHhc----
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCY-TNFARAFIM---- 80 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~---- 80 (287)
...+...|++++|++.++.-...-+............+.+.|+.++|..+|..++..+ |+...| ..+..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3556788999999999977544332222678888889999999999999999998874 454444 444444411
Q ss_pred -cCChHHHHHHHHHHHh----------------------------------cCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 023133 81 -TDDCTQLLIFIEEVVQ----------------------------------IASPESIIVVNRIIFAFAKSRQIEKALLI 125 (287)
Q Consensus 81 -~~~~~~a~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 125 (287)
..+.+...++++++.+ .|+ +.+|+.+-..|.......-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---PslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHcChhHHHHHHHH
Confidence 1234555555555543 232 23455555555544444444455
Q ss_pred HHHHhcC----C----------CCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCch
Q 023133 126 FDHIKGL----K----------CKPDLI--TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRL 189 (287)
Q Consensus 126 ~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (287)
+...... + -+|+.. ++.-+...|...|++++|++++++..+.... .+..|..-.+.+-+.|++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCH
Confidence 5444321 1 123433 4455677788899999999999998887432 367788888889999999
Q ss_pred HHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHh--------HHHHHHHHHhcCChHH
Q 023133 190 DLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYV--------YRSLIDNLKKMGKVDL 261 (287)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~ 261 (287)
.+|.+.++...+.+ .-|...-+-.+..+.+.|++++|.+++....+.+..|-... ......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999988775 44666777778888899999999999998887654433222 1334567889999999
Q ss_pred HHHHHHHHhhcC
Q 023133 262 AMTIFEEMNSSL 273 (287)
Q Consensus 262 a~~~~~~~~~~~ 273 (287)
|++.|..+.+.+
T Consensus 324 ALk~~~~v~k~f 335 (517)
T PF12569_consen 324 ALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHHHHHHH
Confidence 988888775543
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.46 E-value=1.5e-09 Score=88.91 Aligned_cols=270 Identities=6% Similarity=0.021 Sum_probs=213.3
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
||+.-.+.|.+.+.++-|..+|....+-.+.....|......--..|..+....+|++.... .+-....|.......-.
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHh
Confidence 35556677788888888888888877766544477877777777788888888888888775 33345566666677778
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.|+...|..++..+.+.. +.+..+|-.-+..-....+++.|..+|.+.... .|+...|.--+..---.++.++|.++
T Consensus 597 agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred cCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 899999999999998876 557888888888889999999999999888765 57777776666666678889999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 240 (287)
+++..+. .+.-...|..+.+.+-+.++.+.|.+.|..-.+. ++-....|-.|...--+.|.+-.|..++++..-.+ +
T Consensus 674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-P 750 (913)
T KOG0495|consen 674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-P 750 (913)
T ss_pred HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-C
Confidence 9888775 2223467788888888999999999988776554 24445577777777788899999999999988664 5
Q ss_pred cchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 241 PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
-+...|...|..=.+.|..+.|..+..++++..|...
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 5788899999999999999999999999999888654
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=5.9e-11 Score=96.98 Aligned_cols=233 Identities=13% Similarity=0.145 Sum_probs=174.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhc-----CCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHh-----c-CCC-C
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDK-----NIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVS-----S-RTL-S 67 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~ 67 (287)
..|...|...|+++.|+.+++...+. |...+ ...+.+...|...+++++|..+|+++... | ..| -
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~v 282 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAV 282 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 45888999999999999999887654 22222 45556788999999999999999998653 1 112 2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhc-----CC-CCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQI-----AS-PES-IIVVNRIIFAFAKSRQIEKALLIFDHIKGL---KCKPD 137 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~ 137 (287)
..+++.|..+|.+.|++++|...++...+. +. .+. ...++.+...+...+++++|..++....+. -+.++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 346777888999999999999998877543 11 122 245667788889999999999998766432 11222
Q ss_pred ----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC--CC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhh----C
Q 023133 138 ----LITYNIVLDILGRVGRVNDMLNEFASMKEA----GV--VP-DFISYNTLLNNLRKIRRLDLCLIYFREMGE----S 202 (287)
Q Consensus 138 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 202 (287)
..+++.|...|...|++++|.+++++.... +- .+ ....++.+...|.+.++..+|.++|.+... .
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 247899999999999999999999997543 11 11 235678888999999999999998887542 3
Q ss_pred CC-cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 203 GI-KPD-LLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 203 ~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
|. .|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 233 3579999999999999999999998886
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=3.8e-10 Score=80.85 Aligned_cols=200 Identities=12% Similarity=-0.028 Sum_probs=155.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
.+...|.-.|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 466677778888888888888888888763 3356678888888888888898988888888876 56778888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCK-PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 192 (287)
+..|++++|...|++....-.- -...+|..+.-+..+.|+.+.|.+.|++..+.... ...+...+.....+.|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 8888999999888887764211 13447778888888889999999988888776543 445667778888888888888
Q ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
..+++.....+. ++..+.-..|..-...|+-+.+-++=..+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888877764 78888777788888888888777766666653
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=7.6e-10 Score=87.52 Aligned_cols=264 Identities=13% Similarity=0.074 Sum_probs=177.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCC
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDD 83 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 83 (287)
..+-|.++|++++|++.|+...+..+..+..|.....+|...|+|+++.+--...++. .|+ .-.+..-.+++-..|+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhcc
Confidence 4566889999999999999999888765678899999999999999988776666542 333 2233333344444454
Q ss_pred hHHHHH----------------------HHHHH--------Hh-cCC--CCcHHHHHHHHHH------------------
Q 023133 84 CTQLLI----------------------FIEEV--------VQ-IAS--PESIIVVNRIIFA------------------ 112 (287)
Q Consensus 84 ~~~a~~----------------------~~~~~--------~~-~~~--~~~~~~~~~l~~~------------------ 112 (287)
+++++. ++++. .+ .+. -|+....++....
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 444322 11110 01 111 1222111111111
Q ss_pred ---------------------------------------------------------HHhcCCHHHHHHHHHHHhcCCCC
Q 023133 113 ---------------------------------------------------------FAKSRQIEKALLIFDHIKGLKCK 135 (287)
Q Consensus 113 ---------------------------------------------------------~~~~~~~~~a~~~~~~~~~~~~~ 135 (287)
+.-.|+.-.|..-|+..+...
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-- 356 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-- 356 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence 112344444444444444432
Q ss_pred CCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHH
Q 023133 136 PDLI-TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTAL 214 (287)
Q Consensus 136 ~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 214 (287)
|... .|--+...|....+.++....|+...+.+.. ++.+|..-.+...-.+++++|..=|++.+... +.+...|-.+
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 2222 2555666777888888888888888776544 56677777777777788888888888887763 3355667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.-+..+.++++++...|++.+++ ++.-+..|+.....+...++++.|.+.|+......|.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 77777889999999999999886 6777889999999999999999999999999888877
No 65
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.42 E-value=1.9e-09 Score=91.79 Aligned_cols=274 Identities=11% Similarity=0.092 Sum_probs=156.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH--HHHHHHH
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDC--YTNFARA 77 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 77 (287)
+.|...|.-.|+++.+..+...+.......+ ++|..+.++|-..|+++.|...|.+..+. .++.++ +.-+...
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm 351 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQM 351 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHH
Confidence 3455555666666666666666554432222 45666666666667777776666665543 233322 2335566
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR----QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
+...|+++.+...|+.+.+.. |.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+....
T Consensus 352 ~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d- 428 (1018)
T KOG2002|consen 352 YIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD- 428 (1018)
T ss_pred HHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-
Confidence 666666666666666666653 445555555665555553 3455555555554432 334555555555544333
Q ss_pred HHHHHHHHHHH----HHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC---CCcCCH------HHHHHHHHHHHh
Q 023133 154 VNDMLNEFASM----KEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES---GIKPDL------LTYTALIDSFGR 220 (287)
Q Consensus 154 ~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~ 220 (287)
+..++..|... ...+..+.....|.+.......|++.+|...|...... ...++. .+--.+..++-.
T Consensus 429 ~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 429 PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 33335555443 23344456677777777777777777777777776543 112222 222234555566
Q ss_pred cCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 221 TGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
.++++.|.+.|..+.+. .|. +..|..+.......+...+|...++.+......+|...+|.
T Consensus 509 l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~ 570 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLL 570 (1018)
T ss_pred hhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHH
Confidence 67777777777777764 233 23344443333345677788888888877777777666554
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.40 E-value=4.1e-11 Score=100.66 Aligned_cols=236 Identities=15% Similarity=0.186 Sum_probs=141.9
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (287)
||..+|.-||..|+.+.|- +|.-|..++.... ..++.++.+..+.++.+.+. .|...+|..|..+|.
T Consensus 27 tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 27 TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAYR 94 (1088)
T ss_pred hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHHH
Confidence 4666666677777766666 6666665555444 56666666666666655443 566778888888888
Q ss_pred ccCChHHHHHHHHH-HH-------hcCCC-CcHH-------------HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 023133 80 MTDDCTQLLIFIEE-VV-------QIASP-ESII-------------VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD 137 (287)
Q Consensus 80 ~~~~~~~a~~~~~~-~~-------~~~~~-~~~~-------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (287)
..||... .+..++ +. ..|+. +... --.+.+....-.|-++.+.+++..+.......
T Consensus 95 ~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~- 172 (1088)
T KOG4318|consen 95 IHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA- 172 (1088)
T ss_pred hccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc-
Confidence 8777654 222222 21 12211 0000 01122233334455555555554443221000
Q ss_pred HhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHH
Q 023133 138 LITYNIVLDILGRV-GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALID 216 (287)
Q Consensus 138 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 216 (287)
.+...++-+... ..+++-..+-..+.+ .|++.+|..++..-...|+.+.|..++.+|.+.|++.+..-|..|+-
T Consensus 173 --p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~ 247 (1088)
T KOG4318|consen 173 --PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLL 247 (1088)
T ss_pred --hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhh
Confidence 111112222222 223333322222222 47888899999988889999999999999999998888887777775
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCC
Q 023133 217 SFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGK 258 (287)
Q Consensus 217 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (287)
+ .++..-+..++.-|.+.|+.|+..|+...+-.+...|.
T Consensus 248 g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 248 G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 5 78888888888888888999999888888777766444
No 67
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.40 E-value=2.4e-09 Score=87.74 Aligned_cols=261 Identities=11% Similarity=0.067 Sum_probs=157.6
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHH
Q 023133 8 KLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQL 87 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 87 (287)
.+-..|++..|..++...-+.++.+...|...+..-..+..++.|..+|.+... ..|+...|..-+..---.++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 344457777777777776666655446777777777777777777777766654 345556665555555556677777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
.+++++.++.- +.-...|-.+.+.+-+.++++.|...|..-.+.- +.....|-.|...=-+.|.+-+|..+++..+..
T Consensus 671 ~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 77777666652 3444566666666667777777776666544431 334445666666666677777777777777766
Q ss_pred CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CC-------------------------cCCHHHHHHHHHHH
Q 023133 168 GVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES----GI-------------------------KPDLLTYTALIDSF 218 (287)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-------------------------~~~~~~~~~l~~~~ 218 (287)
+.+ +...|...|+.-.+.|+.+.|..++.+.++. |+ .-|......+...+
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lf 827 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLF 827 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHH
Confidence 554 6677777777777778777777776665542 10 11222333344444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 219 GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 219 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
-...++++|.+.|.+.++.+ +-+..+|..+..-+.++|.-++-.++++......|
T Consensus 828 w~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 45555666666666655532 22234555555555566655555555555554444
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=4.3e-10 Score=88.87 Aligned_cols=225 Identities=16% Similarity=0.115 Sum_probs=174.3
Q ss_pred HHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 023133 42 ASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (287)
.+.-.|+.-.|..-|+..+.....++. .|..+...|....+.++..+.|.+..+.+ +.++.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 345568888899999998876543333 37777888999999999999999999887 5677788888888888899999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
|..=|++..... +-+...|-.+..+..+.++++++...|++.++. ++-.+..|+.....+...++++.|.+.|+...+
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999998764 335567777777888999999999999999876 344678899999999999999999999998876
Q ss_pred CCCc-----CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 202 SGIK-----PDLLT--YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 202 ~~~~-----~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
..-. .+... -..++.. .-.+++..|..++++..+.+ +-....|..|...-.+.|+.++|+++|++....
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4211 11211 1122222 23489999999999999853 234567889999999999999999999987443
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=6e-09 Score=84.08 Aligned_cols=261 Identities=10% Similarity=0.041 Sum_probs=148.1
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhh----cCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccC
Q 023133 8 KLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAE----TNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTD 82 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 82 (287)
.+...|++++|.+.+++..+..+....++.. ...+.. .+..+.+.+.+.. .....|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4456778888888888877765543333332 222222 3344444444433 1112232 233344556777888
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCH--hhHHHHHHHHHhcCCHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC-KPDL--ITYNIVLDILGRVGRVNDMLN 159 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~ 159 (287)
++++|...+++..+.. +.+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 8888888888888876 55667778888888888888888888887765421 1222 234567777888888888888
Q ss_pred HHHHHHHcCC-CCChhHH-H--HHHHHHHhcCchHHHHHH--HHHH-hhCC-CcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 160 EFASMKEAGV-VPDFISY-N--TLLNNLRKIRRLDLCLIY--FREM-GESG-IKPDLLTYTALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 160 ~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~~-~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 231 (287)
++++...... .+..... + .++.-+...|..+.+.+. +... .... .............++...|+.+.|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888754322 1111111 1 222233333433333332 1111 1110 0111122224566677888889898888
Q ss_pred HHHHhCCCC------c--chHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 232 NDMKQQQIR------P--SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 232 ~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
+.+...... . .........-++...|++++|.+.+......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887653211 0 1122222233456788999998888887554
No 70
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.4e-09 Score=85.65 Aligned_cols=239 Identities=12% Similarity=0.146 Sum_probs=179.6
Q ss_pred CChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 023133 13 GNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIE 92 (287)
Q Consensus 13 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 92 (287)
.++.+|...-+.....+...+.+...-.......|++++|.+.|++.+.....-....|+ +.-.+-..|++++|+..|-
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFL 548 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHH
Confidence 356666666665555554443333333444556799999999999988654332333333 2334567899999999998
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 023133 93 EVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD 172 (287)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 172 (287)
++...- ..+..+..-+...|-...+...|++++.+.... ++.|.....-|...|-+.|+-..|...+-+--.. ++.+
T Consensus 549 klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~n 625 (840)
T KOG2003|consen 549 KLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCN 625 (840)
T ss_pred HHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcc
Confidence 775542 456777778889999999999999999887654 3557778889999999999999998876543332 4457
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHH
Q 023133 173 FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF-GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251 (287)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (287)
..+...|...|....-+++++.+|++..- +.|+..-|..++..| .+.|++.+|.++++...+. ++.|......|+.
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvr 702 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVR 702 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHH
Confidence 78888889999999999999999998754 489999998887655 5789999999999998875 7888999999999
Q ss_pred HHHhcCC
Q 023133 252 NLKKMGK 258 (287)
Q Consensus 252 ~~~~~g~ 258 (287)
.+...|-
T Consensus 703 i~~dlgl 709 (840)
T KOG2003|consen 703 IAGDLGL 709 (840)
T ss_pred Hhccccc
Confidence 8887774
No 71
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.34 E-value=2.6e-08 Score=80.38 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=170.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHH---HHH
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTN---FAR 76 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~ 76 (287)
..+...+...|+.+.+.+.+........... .........+...|++++|.+.+++..+.. +.+...+.. ...
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~ 88 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFG 88 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHH
Confidence 4455666777888888877777665544332 334444556778899999999999998763 333434432 111
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHH
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVND 156 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (287)
.....+....+.+.++.. ....+........+...+...|++++|...+++..+.. +.+...+..+..++...|++++
T Consensus 89 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 89 LGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred hcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 122345555555555542 12223344555667778899999999999999998875 4456677888899999999999
Q ss_pred HHHHHHHHHHcCC-CCCh--hHHHHHHHHHHhcCchHHHHHHHHHHhhCCC-cCCHHHH-H--HHHHHHHhcCCHHHHHH
Q 023133 157 MLNEFASMKEAGV-VPDF--ISYNTLLNNLRKIRRLDLCLIYFREMGESGI-KPDLLTY-T--ALIDSFGRTGNIEESLR 229 (287)
Q Consensus 157 a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~a~~ 229 (287)
|...+++..+... .|+. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|....+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 9999999876532 2232 3455678889999999999999999864421 1222211 1 33334444554333333
Q ss_pred H--HHHHHhCCCC--cchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 230 L--FNDMKQQQIR--PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 230 ~--~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
+ +......... ...........++...|+.++|...++.+....
T Consensus 247 w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 247 WEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 2211111111 111222356667888999999999999986643
No 72
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2e-08 Score=81.00 Aligned_cols=244 Identities=12% Similarity=0.104 Sum_probs=187.2
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
|..+...|+..+-..+=.++.+..|..+.+|.++..-|...|+..+|.+.|.+....... =...|......++-.+..+
T Consensus 285 ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~Ehd 363 (611)
T KOG1173|consen 285 IACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHD 363 (611)
T ss_pred HHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHH
Confidence 456677787777777777787777766689999999999999999999999887643211 2456777888899999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
+|+..+..+-+.-. -....+--+.--|.+.+..+.|.+.|.+..... +.|....+-+.-.....+.+.+|..+|+...
T Consensus 364 QAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 364 QAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 99999887765431 111222234456888899999999999887653 4567778888877788899999999998875
Q ss_pred Hc--CCCC----ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 023133 166 EA--GVVP----DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239 (287)
Q Consensus 166 ~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 239 (287)
.. .+.+ -..+++.|..+|.+.+..++|+..+++.+... +-+..++..+.-.|...|+++.|.+.|.+..- +
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l 518 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--L 518 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--c
Confidence 21 1111 33568889999999999999999999988764 66888999999999999999999999998885 5
Q ss_pred CcchHhHHHHHHHHHh
Q 023133 240 RPSIYVYRSLIDNLKK 255 (287)
Q Consensus 240 ~~~~~~~~~li~~~~~ 255 (287)
.|+-.+...++..+..
T Consensus 519 ~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 519 KPDNIFISELLKLAIE 534 (611)
T ss_pred CCccHHHHHHHHHHHH
Confidence 7887777777765543
No 73
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.23 E-value=1.2e-09 Score=92.15 Aligned_cols=243 Identities=11% Similarity=0.088 Sum_probs=166.7
Q ss_pred HHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 023133 20 RLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIA 98 (287)
Q Consensus 20 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 98 (287)
.++-.+...|+.|+ .+|..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35667888899999 89999999999999999998 9999988878888889999999999888877655
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHH---HHHHHHHHh----cCCCCCCHhhH--------------HHHHHHHHhcCCHHHH
Q 023133 99 SPESIIVVNRIIFAFAKSRQIEK---ALLIFDHIK----GLKCKPDLITY--------------NIVLDILGRVGRVNDM 157 (287)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~--------------~~l~~~~~~~~~~~~a 157 (287)
.|...+|..|..+|...||+.. +++-+..+. ..|+......+ ...+....-.|.|+.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5788999999999999998754 333222221 22221111111 1222333344555555
Q ss_pred HHHHHHHHHcC-CCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 158 LNEFASMKEAG-VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 158 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
++++..+.-.. ..|. ..+++-+.... .-..++........-.|+..+|..++++-...|+.+.|..++.+|.+
T Consensus 159 lkll~~~Pvsa~~~p~----~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPF----QVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccccchH----HHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55554443221 1111 11244443332 33444444433321168999999999999999999999999999999
Q ss_pred CCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCCChhhHh
Q 023133 237 QQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS--SLSDLAGPKDFK 283 (287)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ 283 (287)
.|++.+..-|..|+-+ .++...+..+++-|.. ..|+..+...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 9999999888888866 7777777888877744 356655555554
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=4.8e-08 Score=81.05 Aligned_cols=229 Identities=11% Similarity=0.128 Sum_probs=147.4
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS- 116 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 116 (287)
-....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |.+..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 3445667899999999999875543 33334455667788999999999999999999997 46666666666665222
Q ss_pred ----CCHHHHHHHHHHHhcCCCCCCH---------------------------------hhHHHHHHHHHhcCCHHHHHH
Q 023133 117 ----RQIEKALLIFDHIKGLKCKPDL---------------------------------ITYNIVLDILGRVGRVNDMLN 159 (287)
Q Consensus 117 ----~~~~~a~~~~~~~~~~~~~~~~---------------------------------~~~~~l~~~~~~~~~~~~a~~ 159 (287)
.+.+...++++++...- |.. .+|+.|-..|....+..-...
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence 24667777777775431 111 122333333333333333334
Q ss_pred HHHHHHHc----C----------CCCChh--HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC-HHHHHHHHHHHHhcC
Q 023133 160 EFASMKEA----G----------VVPDFI--SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD-LLTYTALIDSFGRTG 222 (287)
Q Consensus 160 ~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 222 (287)
++...... + -.|+.. ++..+...|...|+.++|.+++++.++. .|+ +..|..-...+-..|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 44443221 1 123332 3345566677788888888888877776 454 456777777788888
Q ss_pred CHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 223 NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
++.+|.+.++...+.+ .-|...-+-.+..+.++|++++|.+++....+..
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 8888888888877653 3355566666677778888888888777774443
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.20 E-value=1.2e-08 Score=77.36 Aligned_cols=187 Identities=13% Similarity=0.106 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh----
Q 023133 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESI---IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI---- 139 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---- 139 (287)
....+..+...+...|+++.|...++++.+.. +.+. .++..+..++.+.|++++|...++++.+.. |+..
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 45566667777777888888888888777654 2222 356667777788888888888888776652 3221
Q ss_pred hHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHH
Q 023133 140 TYNIVLDILGRV--------GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY 211 (287)
Q Consensus 140 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 211 (287)
++..+..++... |++++|.+.|+.+...... +...+..+... .. ... ... ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~-~~---~~~------~~~--------~~~ 169 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRM-DY---LRN------RLA--------GKE 169 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHH-HH---HHH------HHH--------HHH
Confidence 344444455443 5677777777777665322 11222211111 00 000 000 011
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 212 TALIDSFGRTGNIEESLRLFNDMKQQQ--IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 212 ~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
..+...+.+.|++++|...++...+.. -+.....+..+..++...|++++|..+++.+...+|+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 245667889999999999999998752 1223567889999999999999999999999887764
No 76
>PLN02789 farnesyltranstransferase
Probab=99.19 E-value=1.7e-07 Score=73.52 Aligned_cols=233 Identities=15% Similarity=0.105 Sum_probs=156.9
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTL-SSDCYTNFARAFIMTD-DCTQLLIFIEEVVQIASPESIIVVNRIIFA 112 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (287)
++..+-..+...+..++|+.+..++++. .| +..+|+....++...+ ++++++..++++.+.. +.+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444555566677888888888888865 33 3345555555555666 5788888888888776 4556677766656
Q ss_pred HHhcCCH--HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---C
Q 023133 113 FAKSRQI--EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI---R 187 (287)
Q Consensus 113 ~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 187 (287)
+.+.|+. +++...++++.+.. +.+..+|+...-++...|+++++++.++++.+.++. |..+|+.....+.+. |
T Consensus 116 l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccc
Confidence 6666653 66778887777664 456778888888888888899999999988887665 566676665555444 2
Q ss_pred ch----HHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcC--
Q 023133 188 RL----DLCLIYFREMGESGIKPDLLTYTALIDSFGRT----GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG-- 257 (287)
Q Consensus 188 ~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 257 (287)
.. ++..++..+++... +-|...|+.+...+... +...+|.+++.+..+.+ ..+......|++.|+...
T Consensus 194 ~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred cccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhcc
Confidence 22 45666666666553 44566777777777663 34466888888876643 345667778888887532
Q ss_pred ----------------ChHHHHHHHHHHhhcCC
Q 023133 258 ----------------KVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 258 ----------------~~~~a~~~~~~~~~~~~ 274 (287)
..++|.++++.+.+..|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred chhhhhhhhccccccccHHHHHHHHHHHHhhCc
Confidence 24678888888854433
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=3.3e-07 Score=72.85 Aligned_cols=261 Identities=10% Similarity=0.122 Sum_probs=165.7
Q ss_pred hcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
..|++..|.++|++-.+-. |+ .+|.+.+..-.+.+..+.|..+|++..- +.|+..+|....+-=.+.|....+.+
T Consensus 153 ~LgNi~gaRqiferW~~w~--P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWE--PDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HhcccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 4567777777777765543 55 6777777777777777777777777654 34555555554444444444444444
Q ss_pred HHHHHHhc------------------------------------------------------------------------
Q 023133 90 FIEEVVQI------------------------------------------------------------------------ 97 (287)
Q Consensus 90 ~~~~~~~~------------------------------------------------------------------------ 97 (287)
+++.+.+.
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 44333210
Q ss_pred --------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh--hHHHHH--------HHHHhcCCHHHHHH
Q 023133 98 --------ASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI--TYNIVL--------DILGRVGRVNDMLN 159 (287)
Q Consensus 98 --------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~~~~~~a~~ 159 (287)
..+.|-.+|--.++.-...|+.+...++|++....- +|-.. .|..-| -.=....+++.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 004455566666777777788888888888877542 34221 121111 11123445555555
Q ss_pred HHHHHHH------------------------------------cCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC
Q 023133 160 EFASMKE------------------------------------AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG 203 (287)
Q Consensus 160 ~~~~~~~------------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 203 (287)
+|+...+ -|..|-..+|...|..-.+.+++|.+..++++.++.+
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5544332 2445666677777777777888888888888888875
Q ss_pred CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 204 IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ-IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
+.|..+|......-...|+.+.|..+|.-.+.+. +......|.+.|+-=...|.++.|..+|+++++..+..+
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 5566777777777778888888888888887652 223345677777777788899999999988877655443
No 78
>PLN02789 farnesyltranstransferase
Probab=99.16 E-value=1.7e-07 Score=73.50 Aligned_cols=228 Identities=8% Similarity=0.017 Sum_probs=168.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN-DIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
+.+-..+...++.++|+.+.+.+...++....+|+....++...| ++++++..++++.+.+.+ +..+|+...-.+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 344556677889999999999999988766578888777777777 689999999999987533 445666555455555
Q ss_pred CC--hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc---CC---
Q 023133 82 DD--CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV---GR--- 153 (287)
Q Consensus 82 ~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~--- 153 (287)
++ .+.+..+++++++.. +.+..+|+....++...|+++++++.++++.+.+ +.+...|+....++.+. |.
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 55 367888999999887 6788999999999999999999999999999876 34666777766655544 22
Q ss_pred -HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc----CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC------
Q 023133 154 -VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI----RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG------ 222 (287)
Q Consensus 154 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 222 (287)
.++.+.+..++...... |...|+.+...+... +...+|.+.+.+..+.+ ..+......|++.|+...
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~ 275 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEF 275 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhh
Confidence 24677777777766543 778888888877763 34466888888877654 446678888999888632
Q ss_pred ------------CHHHHHHHHHHHH
Q 023133 223 ------------NIEESLRLFNDMK 235 (287)
Q Consensus 223 ------------~~~~a~~~~~~~~ 235 (287)
..++|.++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 276 RDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhhhhccccccccHHHHHHHHHHHH
Confidence 2356777777773
No 79
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.7e-08 Score=81.66 Aligned_cols=254 Identities=15% Similarity=0.126 Sum_probs=183.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQ 86 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 86 (287)
..+.+.|++.+|.-.|+.....++..-++|..|.......++-..|+..+++.++.. +-+......|...|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 456788999999999999988886655899999999999999999999999988753 2356677778888889999899
Q ss_pred HHHHHHHHHhcCCCC--------cHHHHHHHHHHHHhcCCHHHHHHHHHHH-hcCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 023133 87 LLIFIEEVVQIASPE--------SIIVVNRIIFAFAKSRQIEKALLIFDHI-KGLKCKPDLITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 87 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 157 (287)
|...++..+...++- +...-+. ..+..........++|-++ ...+..+|......|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999998876544210 0000000 1122223344455555444 4444346777888888888899999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 158 LNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL-LTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
...|+........ |...||-|...++...+..+|+..|.+.++. .|+- .....|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998876543 6788999999999999999999999999876 5653 3445577788899999999988877653
Q ss_pred C---------CCCcchHhHHHHHHHHHhcCChHHHHHHH
Q 023133 237 Q---------QIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266 (287)
Q Consensus 237 ~---------~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (287)
. +..++...|..|=.++.-.++.|.+.+..
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 2 11223456776666666677766554443
No 80
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=3.2e-08 Score=73.94 Aligned_cols=262 Identities=15% Similarity=0.068 Sum_probs=158.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHH-HHHHHhc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTN-FARAFIM 80 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 80 (287)
+++.+..+.+..++++|++++....++++........+..+|....++..|-..++++... .|...-|.. -...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 5678888899999999999999998888765578888999999999999999999998754 444443432 1234445
Q ss_pred cCChHHHHHHHHHHHhcC-------------------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIA-------------------------------SPESIIVVNRIIFAFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 129 (287)
.+.+..|+.+...|.+.. ...+..+.+.......+.|+++.|.+-|+..
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 566666666655544310 0122333344444455667777777777766
Q ss_pred hcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCh---------------hHHHHHHH
Q 023133 130 KGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV-------------PDF---------------ISYNTLLN 181 (287)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~---------------~~~~~l~~ 181 (287)
.+.+---....||..+.. .+.+++..|++...++.+.|++ ||+ ..+|.-..
T Consensus 171 lqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred HhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 654333344556554433 3556777777777777766643 111 11222233
Q ss_pred HHHhcCchHHHHHHHHHHhh-CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChH
Q 023133 182 NLRKIRRLDLCLIYFREMGE-SGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVD 260 (287)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (287)
.+.+.++++.|.+.+..|.- .....|+.|...+.-.-. .+++-+..+-+.-+...+ +-...||..++-.||+..-++
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHh
Confidence 34566777777777766652 122344555444332211 233444444444444432 234577888888888888888
Q ss_pred HHHHHHHH
Q 023133 261 LAMTIFEE 268 (287)
Q Consensus 261 ~a~~~~~~ 268 (287)
.|.+++-+
T Consensus 328 lAADvLAE 335 (459)
T KOG4340|consen 328 LAADVLAE 335 (459)
T ss_pred HHHHHHhh
Confidence 77776643
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=9.4e-09 Score=79.44 Aligned_cols=218 Identities=15% Similarity=0.115 Sum_probs=145.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH-HHHHHHhccC
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYT-NFARAFIMTD 82 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 82 (287)
+.+++...|+.+.+ ..++.... .|+ .+...+...+...++-+.++.-+++.......++..++. .....+...|
T Consensus 41 ~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 45677777776643 34444433 444 566566555554455556665555554443332333333 3345677889
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH----HhcCCHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL----GRVGRVNDML 158 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~ 158 (287)
++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.. .|.. ...+..++ ...+.+++|.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~-l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSI-LTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHH-HHHHHHHHHHHHHTTTCCCHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHH-HHHHHHHHHHHHhCchhHHHHH
Confidence 999999887642 456677778899999999999999999999863 3443 33344433 3345799999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI-EESLRLFNDMKQQ 237 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 237 (287)
.+|+++.+. ..+++.+.+.+..+....|++++|.+++.+..+.+ +-+..+...++-+....|+. +.+.+++.++...
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999998765 55788899999999999999999999999988764 33556766777777777877 7788899888864
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.5e-07 Score=73.45 Aligned_cols=262 Identities=10% Similarity=-0.008 Sum_probs=176.3
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChHH
Q 023133 10 CKAGNVSAAVRLLQSLRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCTQ 86 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 86 (287)
+-.++...|..++-.+......+. +....+..++...|+.++|+..|++.+.. .|+ ..........+.+.|+++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 334555555555555554444444 67777888888888888888888887643 332 2223333444567788888
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
...+...+.... ..+...|-.-+......++++.|+.+-++.++.. +.+...+-.-...+...|++++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 877777776654 3444455555555666788888888888877654 33455555555677788899998888888776
Q ss_pred cCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH-HHH-HhcCCHHHHHHHHHHHHhCCCCcch-
Q 023133 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI-DSF-GRTGNIEESLRLFNDMKQQQIRPSI- 243 (287)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~- 243 (287)
... -+..+|..|+.+|...|.+.+|..+-+..... ++-+..+.+.+. ..+ .....-++|.++++...+. .|+-
T Consensus 363 Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~ 438 (564)
T KOG1174|consen 363 LAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYT 438 (564)
T ss_pred cch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccH
Confidence 532 26788999999999999999888777665543 133444554442 222 2233457788888887764 5553
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
..-..+...|...|..+++..++++.....||..-.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH 474 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLH 474 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHH
Confidence 355667778889999999999999999988876543
No 83
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.3e-08 Score=82.15 Aligned_cols=229 Identities=12% Similarity=0.087 Sum_probs=176.3
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 023133 40 LVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119 (287)
Q Consensus 40 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 119 (287)
..-+.+.|+..+|.-.|+...+.. +-+...|..|.......++-..|+..+++..+.. +.+..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344568899999999999888764 4467899999999999999999999999999987 67788888899999999999
Q ss_pred HHHHHHHHHHhcCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCchH
Q 023133 120 EKALLIFDHIKGLKCK--------PDLITYNIVLDILGRVGRVNDMLNEFASM-KEAGVVPDFISYNTLLNNLRKIRRLD 190 (287)
Q Consensus 120 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (287)
..|...++.-.....+ ++...-+. ..+..........++|-++ .+.+.++|......|.-.|--.|+++
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999998776543210 00000000 1222333445556666665 45555577788888888888999999
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+|.+.|+..+... +-|..+||.|.-+++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+++|.+.|-.+
T Consensus 448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999998764 446679999999999999999999999999974 666 346666888899999999999999888
Q ss_pred hhcCCC
Q 023133 270 NSSLSD 275 (287)
Q Consensus 270 ~~~~~~ 275 (287)
+...+.
T Consensus 525 L~mq~k 530 (579)
T KOG1125|consen 525 LSMQRK 530 (579)
T ss_pred HHhhhc
Confidence 554443
No 84
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.13 E-value=2.5e-07 Score=70.61 Aligned_cols=198 Identities=13% Similarity=0.148 Sum_probs=121.3
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 157 (287)
+...|+...|+.....+++.. +-|...+..-..+|...|++..|+.=++...+.. ..+..++.-+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 344455555555555555543 3455555555566666666666665555554432 23344444555556666666666
Q ss_pred HHHHHHHHHcCCCCChhHH----HHH---------HHHHHhcCchHHHHHHHHHHhhCCCcCCHH---HHHHHHHHHHhc
Q 023133 158 LNEFASMKEAGVVPDFISY----NTL---------LNNLRKIRRLDLCLIYFREMGESGIKPDLL---TYTALIDSFGRT 221 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~----~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 221 (287)
+...++..+. .||.... ..+ +......++|.++.+..+...+........ .+..+-.++...
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 6666666554 3443221 111 112334556666666666666542221122 234455677788
Q ss_pred CCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhh
Q 023133 222 GNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKD 281 (287)
Q Consensus 222 g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (287)
|++.+|++...+..+. .|| +.++.--..+|.-...+++|..-|+++....+++...+.
T Consensus 321 ~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred CCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 8999999999998864 455 788888889999999999999999999888887765443
No 85
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=5.9e-07 Score=66.18 Aligned_cols=262 Identities=13% Similarity=0.132 Sum_probs=175.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
++-+.-.|++..++..-....... .....-..+.++|...|.+...+. +.... -.|....+..+.......++.+
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchhH
Confidence 345556677777776655544332 111345556677777777654433 22222 2334444444444444445444
Q ss_pred HHH-HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 86 QLL-IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 86 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
.-. ++.+.+.......+......-...|...+++++|++...... +......=+.++.+..+.+-|...++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344455554444444444444567899999999999988732 3333333445667888999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 023133 165 KEAGVVPDFISYNTLLNNLRK----IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240 (287)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 240 (287)
.+-. +..|.+.|..++.+ .+...+|.-+|++|.+. ..|+..+.+....++...|++++|..++++..... .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 8852 66788877777665 45788999999999874 38899999999999999999999999999999763 4
Q ss_pred cchHhHHHHHHHHHhcCCh-HHHHHHHHHHhhcCCCCCChhhHh
Q 023133 241 PSIYVYRSLIDNLKKMGKV-DLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
.++.+...++.+-...|.. +-..+.+.+++...|..+-..++-
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ 282 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVKHLN 282 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4667777777666666655 556788899999988887665543
No 86
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=1.6e-08 Score=83.88 Aligned_cols=228 Identities=6% Similarity=0.005 Sum_probs=178.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..-..+...+...|-...|+.+++++. .|..++.+|...|+..+|..+..+..+. +||+..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 444556778888899999999988763 4666888899999999999999888873 78999999999988
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
....-+++|.++++..... .-..+.....+.++++++.+.|+.-.+.+. ....+|-....+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHH
Confidence 7777789999888765321 111222223347899999999988766543 25678888888889999999999
Q ss_pred HHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 194 IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
+.|....... +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+...|...+....+-|.+++|++.+.++....
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999988763 3345689999999999999999999999999887 5667788888888889999999999999996655
Q ss_pred CCCCChhhH
Q 023133 274 SDLAGPKDF 282 (287)
Q Consensus 274 ~~~~~~~~~ 282 (287)
....++++.
T Consensus 618 ~~~~d~~vl 626 (777)
T KOG1128|consen 618 KKYKDDEVL 626 (777)
T ss_pred hhcccchhh
Confidence 444444443
No 87
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=7.7e-07 Score=70.86 Aligned_cols=265 Identities=8% Similarity=0.037 Sum_probs=196.6
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhccCChHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS-DCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 89 (287)
..+++..|.++|++...-+...-..|..-+.+-.++.....|..++++.... -|.. ..|-..+..=-..|+...|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3567788999999998876443368888888888999999999999998864 3332 334444555556799999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C
Q 023133 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA-G 168 (287)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 168 (287)
+|+...+- .|+...|++.++.=.+-+.++.|..++++..-. .|++.+|--....=.++|+...|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99998774 699999999999999999999999999998765 699999988888888999999999999988664 1
Q ss_pred C-CCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHH--------HHHHHHhC
Q 023133 169 V-VPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD--LLTYTALIDSFGRTGNIEESLR--------LFNDMKQQ 237 (287)
Q Consensus 169 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~--------~~~~~~~~ 237 (287)
- ..+...+.++..--.++..++.|.-+|+-.++. ++.+ ...|..+...--+-|+.....+ -++.+++.
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 1 112334555555455677888999999888875 2223 3456666555555666443332 23344443
Q ss_pred CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
+ +.|-.+|--.+..--..|+.+...++|+++....|....-..|.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~ 362 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWR 362 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHH
Confidence 2 55777888888888888999999999999988877654444444
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=5.4e-08 Score=73.77 Aligned_cols=167 Identities=11% Similarity=0.073 Sum_probs=114.3
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC-C-CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcH--HHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRT-L-SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESI--IVVNRI 109 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 109 (287)
..+..+...+...|+++.|...++++...... | ....+..+..++...|++++|...++++.+....... .++..+
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 56777777777788888888888777664311 1 1135566677777778888888888877765422111 234445
Q ss_pred HHHHHhc--------CCHHHHHHHHHHHhcCCCCCCHh-hH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 023133 110 IFAFAKS--------RQIEKALLIFDHIKGLKCKPDLI-TY-----------------NIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 110 ~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~-----------------~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
..++... |++++|.+.|+.+.+. .|+.. .+ ..+...+.+.|++++|...++.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5555544 6777788888777655 23321 11 1345678899999999999999
Q ss_pred HHHcCC-CC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 164 MKEAGV-VP-DFISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 164 ~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
..+... .| ....+..+..++.+.|+.++|..+++.+...
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 887632 12 3568889999999999999999999888765
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.08 E-value=1.7e-07 Score=68.56 Aligned_cols=119 Identities=6% Similarity=-0.007 Sum_probs=66.7
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCc--hHHH
Q 023133 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN-LRKIRR--LDLC 192 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a 192 (287)
.++.+++...++...+.. +.+...|..+...|...|++++|...|++....... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555555555554443 345556666666666666666666666666554432 44555555544 244444 3666
Q ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.+++++..+.+ +-+...+..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666553 234455555666666666666666666666654
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=7.6e-07 Score=74.70 Aligned_cols=260 Identities=13% Similarity=0.061 Sum_probs=183.1
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (287)
..++++.+++..+.++..+.+...+.--|+..++.+.|++...+.++.+..-+...|..+.-.+...+++.+|+.+.+..
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45677888888888887776666666778889999999999999999877788899999999999999999999999877
Q ss_pred HhcCCC-------------------CcHHHHHHHHHHHHhc-----------------------CCHHHHHHHHHHH---
Q 023133 95 VQIASP-------------------ESIIVVNRIIFAFAKS-----------------------RQIEKALLIFDHI--- 129 (287)
Q Consensus 95 ~~~~~~-------------------~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~--- 129 (287)
...-.. ....++..++..+-.. .+..++.+....+
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 654211 0112222222222100 0111111111111
Q ss_pred -----hcCC---------CCC--C------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 023133 130 -----KGLK---------CKP--D------LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187 (287)
Q Consensus 130 -----~~~~---------~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (287)
...| +.| + ...|......+.+.++.++|...+.+..... ......|......+...|
T Consensus 620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKG 698 (799)
T ss_pred HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHH
Confidence 0001 011 1 1123445566777788888887777776653 235566777777888899
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLR--LFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTI 265 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (287)
.+.+|.+.|......+ +-++.....+..++.+.|+..-|.+ ++.++.+.+ +.+...|..+...+-+.|+.+.|.+.
T Consensus 699 ~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred hhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHH
Confidence 9999999999888763 3345678889999999998888887 999999875 55788999999999999999999999
Q ss_pred HHHHhhcCCCCC
Q 023133 266 FEEMNSSLSDLA 277 (287)
Q Consensus 266 ~~~~~~~~~~~~ 277 (287)
|....+..+..|
T Consensus 777 f~aa~qLe~S~P 788 (799)
T KOG4162|consen 777 FQAALQLEESNP 788 (799)
T ss_pred HHHHHhhccCCC
Confidence 999877665554
No 91
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=3e-08 Score=82.33 Aligned_cols=213 Identities=8% Similarity=0.065 Sum_probs=159.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCC
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDD 83 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (287)
.+...+.+.|-...|..+|+++. .|..++.+|...|+..+|..+..+..+ -+|++..|..+.+......-
T Consensus 403 ~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 35677888999999999998875 688889999999999999999888877 47888888888887777777
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +-...+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 77777777654322 22223333344688888888887765543 34666787788888888888888888888
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
....... +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|++.+.++.+
T Consensus 545 cvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7765322 55778888888888888888888888888776 33444555566667788888888888887764
No 92
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.05 E-value=4.5e-07 Score=80.64 Aligned_cols=235 Identities=11% Similarity=0.052 Sum_probs=165.1
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHhccCChHHHHHHHHHHHh
Q 023133 22 LQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS-----DCYTNFARAFIMTDDCTQLLIFIEEVVQ 96 (287)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (287)
|++....++...-.|-..+..+.+.++.+.|.++.++.+.. +.+.. ..|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444444443367888888888888888898888888754 33322 3566666666666777888888888877
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhH
Q 023133 97 IASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVP-DFIS 175 (287)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~ 175 (287)
.. ....+|..|...|.+.+.+++|.++++.|.+.- .-....|...+..+.++.+-+.|.+++.+..+.-.+- -...
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence 53 335678888888888888999999998887642 2456688888888888888888888888876642111 1223
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch--HhHHHHHHHH
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI--YVYRSLIDNL 253 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~ 253 (287)
....+..-.+.|+.+.+..+|+..+... +--...|+..++.-.++|+.+.++.+|++....++.|-. ..|...+..=
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence 3444555567788888888888887653 334567888888888888888899999988887766643 3555555544
Q ss_pred HhcCChHH
Q 023133 254 KKMGKVDL 261 (287)
Q Consensus 254 ~~~g~~~~ 261 (287)
-..|+-+.
T Consensus 1682 k~~Gde~~ 1689 (1710)
T KOG1070|consen 1682 KSHGDEKN 1689 (1710)
T ss_pred HhcCchhh
Confidence 45555433
No 93
>PF12854 PPR_1: PPR repeat
Probab=99.01 E-value=6.2e-10 Score=55.85 Aligned_cols=30 Identities=37% Similarity=0.917 Sum_probs=12.6
Q ss_pred CcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 204 IKPDLLTYTALIDSFGRTGNIEESLRLFND 233 (287)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 233 (287)
+.||..||+.||++|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344444444444444444444444444443
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=1.6e-07 Score=68.66 Aligned_cols=156 Identities=8% Similarity=0.041 Sum_probs=114.7
Q ss_pred HHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 023133 41 VASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120 (287)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 120 (287)
-.|...|+++.+....+.+. .|. ..+...++.+++...++...+.. +.+...|..+...|...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~----~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA----DPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh----Ccc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
Confidence 46778888877644432221 111 12223567778888888887776 678889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHH
Q 023133 121 KALLIFDHIKGLKCKPDLITYNIVLDIL-GRVGR--VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFR 197 (287)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 197 (287)
+|...|++..+.. +.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+...|++++|...|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888775 34666777777764 56676 58999999999887654 67788888888999999999999999
Q ss_pred HHhhCCCcCCHHHHH
Q 023133 198 EMGESGIKPDLLTYT 212 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~ 212 (287)
++.+.. +|+..-+.
T Consensus 169 ~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 169 KVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHhhC-CCCccHHH
Confidence 988764 55554443
No 95
>PF12854 PPR_1: PPR repeat
Probab=99.00 E-value=7.4e-10 Score=55.57 Aligned_cols=32 Identities=38% Similarity=0.813 Sum_probs=15.8
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 133 KCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34445555555555555555555555554444
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.00 E-value=4.7e-08 Score=67.70 Aligned_cols=99 Identities=12% Similarity=-0.062 Sum_probs=50.4
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCC
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGK 258 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (287)
....+...|++++|...|+...... +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444455555555555555555442 2344455555555555555555555555555432 2344455555555555555
Q ss_pred hHHHHHHHHHHhhcCCCCCCh
Q 023133 259 VDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~ 279 (287)
+++|...|++.....|+++..
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHH
Confidence 555555555555555554443
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.99 E-value=3.5e-06 Score=76.70 Aligned_cols=270 Identities=8% Similarity=-0.004 Sum_probs=178.9
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCc-----hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC---C--CHHHHHHHHH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLP-----NAYNCVLVASAETNDIDLSFQILKDLLVSSRT---L--SSDCYTNFAR 76 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~ 76 (287)
..+...|++++|...+++......... .+.+.+...+...|+++.|...+++....... + .......+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 445678999999999998765322111 24456667778899999999999888643211 1 1234455667
Q ss_pred HHhccCChHHHHHHHHHHHhc----CCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCC--CHhhHHHHH
Q 023133 77 AFIMTDDCTQLLIFIEEVVQI----ASP---ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK--CKP--DLITYNIVL 145 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~ 145 (287)
.+...|+++.|...+++..+. +.. .....+..+...+...|++++|...+.+..... ..+ ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 788899999999998876543 211 123345556667788899999999988765421 112 233445566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHH-----HHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH---HHHHHHHH
Q 023133 146 DILGRVGRVNDMLNEFASMKEAGVVP-DFISY-----NTLLNNLRKIRRLDLCLIYFREMGESGIKPDL---LTYTALID 216 (287)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~ 216 (287)
..+...|++++|.+.+.......... ....+ ...+..+...|+.+.|.+.+............ ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 77889999999999998875421110 11111 11224455678999999998776542211111 12345677
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 217 SFGRTGNIEESLRLFNDMKQQ----QIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 217 ~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.++.......
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 788999999999999988753 32222 3456677778899999999999999997765443
No 98
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.95 E-value=1.2e-07 Score=69.59 Aligned_cols=163 Identities=11% Similarity=-0.012 Sum_probs=133.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
.. ..+-..+...|+-+....+....... .+-+....+..+....+.|++..|...+++..... ++|...|+.+.-+|
T Consensus 68 ~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaal 144 (257)
T COG5010 68 SI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAAL 144 (257)
T ss_pred HH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHH
Confidence 44 66677788888888888887776532 23355566668899999999999999999998876 78999999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
.+.|+.+.|..-|.+..+.. .-+....|.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|.
T Consensus 145 dq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 145 DQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHH
Confidence 99999999999999988764 335667788888889999999999999999887654 6677777888889999999999
Q ss_pred HHHHHHhh
Q 023133 194 IYFREMGE 201 (287)
Q Consensus 194 ~~~~~~~~ 201 (287)
.+...-..
T Consensus 223 ~i~~~e~~ 230 (257)
T COG5010 223 DIAVQELL 230 (257)
T ss_pred hhcccccc
Confidence 98876553
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.1e-06 Score=64.60 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=111.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 023133 72 TNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151 (287)
Q Consensus 72 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (287)
..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44556666667767666666654333 24566666667777788888888888888776654 56777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 231 (287)
|+.++|..-|.+..+.-.. +...++.+.-.+.-.|+.+.|..++......+ .-|...-..|.-.....|++++|.++.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888777765333 44566777777777788888888887776654 335556666777777778888887776
Q ss_pred HHHH
Q 023133 232 NDMK 235 (287)
Q Consensus 232 ~~~~ 235 (287)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5443
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=2.5e-06 Score=73.74 Aligned_cols=133 Identities=12% Similarity=0.106 Sum_probs=68.7
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 023133 100 PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI-TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (287)
+.+...+..|.....+.|.+++|..+++...+. .||.. ....+..++.+.+++++|...+++....... +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 344555555555555555555555555555544 33322 3444555555555555555555555554322 3344444
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555555421 22244555555555555555555555555554
No 101
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.7e-06 Score=66.47 Aligned_cols=256 Identities=12% Similarity=0.040 Sum_probs=142.1
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHH-HHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNC-VLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
..-.+++|++++.++...++.- ...+. +.-+|.+..-++-+.+++.-.++. .+-+....|..+....+.=+-..|..
T Consensus 163 mR~HYQeAIdvYkrvL~dn~ey-~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~ 240 (557)
T KOG3785|consen 163 MRMHYQEAIDVYKRVLQDNPEY-IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAED 240 (557)
T ss_pred HHHHHHHHHHHHHHHHhcChhh-hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHH
Confidence 3345889999999988766432 23333 444677778788888888777654 33333334433322222211111111
Q ss_pred H--------------HHHHHhcCC------------CC-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH
Q 023133 90 F--------------IEEVVQIAS------------PE-----SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL 138 (287)
Q Consensus 90 ~--------------~~~~~~~~~------------~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (287)
- .+.+.+.+. -| -+..--.|+-.|.+.+++.+|..+.+++. +.+.
T Consensus 241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP 316 (557)
T KOG3785|consen 241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTP 316 (557)
T ss_pred HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCCh
Confidence 1 111111110 00 01122234445777888888887777664 1122
Q ss_pred hhH-------------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH
Q 023133 139 ITY-------------------------------------------NIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS 175 (287)
Q Consensus 139 ~~~-------------------------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 175 (287)
.-| .++.+.+.-..++++++.+++.+...=...|...
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 222 1222222223334444444444433322222222
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHH-HHHHHHH
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR-SLIDNLK 254 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~ 254 (287)
| .+.++++..|+..+|.++|-++....++.+..-...|..+|.+.+.++.|+.++-++.. +.+..+.. .+..-|.
T Consensus 397 ~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 L-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred h-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 3 36677888899999999998887655443433445567889999999999887755442 23344333 3445688
Q ss_pred hcCChHHHHHHHHHHhhcCCCC
Q 023133 255 KMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
+++++--|.+.|+.+..+.|..
T Consensus 473 k~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHhhhHHHccCCCc
Confidence 8999988999999887776543
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.93 E-value=8.7e-08 Score=65.88 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (287)
...+...+...|++++|.+.++.+.+.+ +.+...+..+..++...|++++|..+++...+.+ +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444445555556666666665555443 3344555555555555566666666666555432 3334455555555566
Q ss_pred cCChHHHHHHHHHHhhcCCCCCChhhH
Q 023133 256 MGKVDLAMTIFEEMNSSLSDLAGPKDF 282 (287)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (287)
.|++++|...|++..+..|+......+
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHH
Confidence 666666666666666655555543333
No 103
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=4.7e-06 Score=68.82 Aligned_cols=260 Identities=11% Similarity=0.142 Sum_probs=188.4
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIF 90 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 90 (287)
..+++...+++.+.+.+..+..+++.....-.+...|+-++|........... .-+..+|+.+.-.+....++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 66788888888888888766655777777777888899999999888877643 34667888777777778899999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 023133 91 IEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG-V 169 (287)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 169 (287)
++.+...+ +.|..+|.-+.-.-++.|+++.....-..+.+.. +.....|..+..++.-.|++..|..+++...+.. -
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999987 6788888888888888899999988888887763 2345578888888889999999999999987664 2
Q ss_pred CCChhHHHHHH------HHHHhcCchHHHHHHHHHHhhCCCcCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 023133 170 VPDFISYNTLL------NNLRKIRRLDLCLIYFREMGESGIKPDLLTY-TALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242 (287)
Q Consensus 170 ~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 242 (287)
.|+...|.... ......|..+.|.+.+..-... ..|-..+ ..-...+.+.+++++|..++..++.. .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 45665554332 2345677788888877665433 2233332 34456678899999999999999986 365
Q ss_pred hHhHH-HHHHHHHhcCChHHHH-HHHHHHhhcCCCCC
Q 023133 243 IYVYR-SLIDNLKKMGKVDLAM-TIFEEMNSSLSDLA 277 (287)
Q Consensus 243 ~~~~~-~li~~~~~~g~~~~a~-~~~~~~~~~~~~~~ 277 (287)
-.-|. .+..++.+--+.-++. .+|....+..|...
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 55444 4444554333333444 66666655555443
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=1.1e-05 Score=66.76 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcch-HhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSI-YVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 213 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
.++..+-..|+++.|..+++....+ .|+. ..|..=...+...|++++|..++++.++..
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 4566677777888888887777764 4443 355555667777788888888887776654
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.90 E-value=2e-06 Score=75.33 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=95.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 023133 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181 (287)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 181 (287)
+..++..+..+|-+.|+.++|..+++++.+.. +-+..+.|.+...|... +.++|.+++.+....-+ +..-|+.+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e 190 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEE 190 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHH
Confidence 34567778888888888888888888888776 45677788888888888 88888888877765411 1111222211
Q ss_pred HH-----HhcCchHHHHHHHHHHhhC-CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHH
Q 023133 182 NL-----RKIRRLDLCLIYFREMGES-GIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLK 254 (287)
Q Consensus 182 ~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (287)
.+ ....+.+.-.++.+.+... |..--..++-.+...|...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 11 1122333444444444432 333344566677788888899999999999999863 335566677777765
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.89 E-value=2.5e-07 Score=64.09 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=49.0
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 4444555555555555555555544 3445555555555555555555555555555443 2344455555555555555
Q ss_pred HHHHHHHHHHHHHc
Q 023133 154 VNDMLNEFASMKEA 167 (287)
Q Consensus 154 ~~~a~~~~~~~~~~ 167 (287)
+++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555443
No 107
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.88 E-value=8.3e-06 Score=68.71 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=93.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHh-
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTL-SSDCYTNFARAFI- 79 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~- 79 (287)
|..|.-++...|+++.+.+.|++.........+.|+.+...+...|.-..|+.+++.-......| +...+-.....|.
T Consensus 326 ~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e 405 (799)
T KOG4162|consen 326 FDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIE 405 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHh
Confidence 45566666777777777777776654433333556666666666666556665555543322112 2222222222222
Q ss_pred ccCChHH--------------------------------------------------HHHHHHHHHhcCCCCcHHHHHHH
Q 023133 80 MTDDCTQ--------------------------------------------------LLIFIEEVVQIASPESIIVVNRI 109 (287)
Q Consensus 80 ~~~~~~~--------------------------------------------------a~~~~~~~~~~~~~~~~~~~~~l 109 (287)
+.+..++ +.+.+++..+.+ +.|+.+...+
T Consensus 406 ~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~l 484 (799)
T KOG4162|consen 406 RLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYL 484 (799)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 2233333 344444444444 2333333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 110 IFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
.--|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+..
T Consensus 485 alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 485 ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4457778888999988888888755677888888888888888888777776554
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.86 E-value=4.7e-06 Score=74.52 Aligned_cols=227 Identities=7% Similarity=-0.031 Sum_probs=177.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcC-CCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKN-IFLP----NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFAR 76 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 76 (287)
|-.-|....+.++.+.|.+++++....= .... ..|.++++.-...|.-+...++|+++.+..- .-..|..|..
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKLLG 1538 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHHHH
Confidence 3345667788999999999999986542 2111 5788888887788888889999999987531 2345778899
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCC
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD---LITYNIVLDILGRVGR 153 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 153 (287)
.|.+...+++|.++++.|.+.- .....+|...++.+.+.++-+.|..++.+..+. -|- .....-.+..-.+.|+
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999998863 477889999999999999999999999988765 343 2334445556678999
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 023133 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL--LTYTALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~ 231 (287)
.+++..+|+.......+ -...|+..+..-.+.|+.+.+..+|++....++.|-. ..|...+..--+.|+-..+..+=
T Consensus 1616 aeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999999877544 5678999999999999999999999999998876654 35666666666667755554443
Q ss_pred HHH
Q 023133 232 NDM 234 (287)
Q Consensus 232 ~~~ 234 (287)
.++
T Consensus 1695 arA 1697 (1710)
T KOG1070|consen 1695 ARA 1697 (1710)
T ss_pred HHH
Confidence 333
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=3.1e-06 Score=73.20 Aligned_cols=148 Identities=10% Similarity=-0.046 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHH
Q 023133 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNI 143 (287)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (287)
.+.+...+..|.....+.|.+++|..+++...+.. |.+......+...+.+.+++++|...+++..... +-+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 44567888888899999999999999999999886 5677788889999999999999999999998774 334556677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH
Q 023133 144 VLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215 (287)
Q Consensus 144 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 215 (287)
+..++.+.|++++|..+|+++...+. -+..++..+..++...|+.++|...|+...+.. .|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 78888899999999999999988543 257888899999999999999999999988653 44555555443
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=8.4e-07 Score=66.60 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=71.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHH-HHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNR-IIFA 112 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~ 112 (287)
.-+.+.+..+.+..++.+|++++..-.++. +.+......+..+|....++..|-..++++-... |...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 457788888889999999999998887753 2366677888899999999999999999987764 33333322 2345
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 023133 113 FAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~ 131 (287)
+.+.+.+.+|..+...|..
T Consensus 88 LY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHhcccHHHHHHHHHhcC
Confidence 6677888888888877764
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.9e-05 Score=63.98 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=64.9
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 85 (287)
.+.+..|+++.|+..|.+....++..-..|..-..+|+..|++++|++=-.+-++ +.|+ +..|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 4556778888888888877766655226677777777777777777665555444 3454 345666677777777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFA 112 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (287)
+|...|.+-++.. +.+...++.+.++
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a 113 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQA 113 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHh
Confidence 7777776655543 3333334433333
No 112
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.9e-05 Score=58.09 Aligned_cols=187 Identities=13% Similarity=0.091 Sum_probs=134.8
Q ss_pred CChhHHHHHHHHHHHh---c-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 023133 47 NDIDLSFQILKDLLVS---S-RTLSSDC-YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121 (287)
Q Consensus 47 ~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (287)
.+.++.++++.+++.. | ..++..+ |..++-+....++.+.|...++++.+.- |.+..+-..-...+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 3466677777666532 3 4455443 4455666777888899999998887764 4444444444444666789999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
|+++++.+.+.. +.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-+++++.-
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999988775 556677777777777788888888888888776 445889999999999999999999999999886
Q ss_pred CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 023133 202 SGIKPDLLTYTALIDSFGRTG---NIEESLRLFNDMKQQ 237 (287)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 237 (287)
.. +.+...+..+...+...| +.+.+.++|.+..+.
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 53 445556666766655444 466788888888875
No 113
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.79 E-value=6.2e-07 Score=61.61 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=53.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 023133 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150 (287)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 150 (287)
...+...+...|++++|.+.++.+.+.+ +.+...+..+...+.+.|++++|...+++..+.+ +.+...+..+..++..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444455555566666666666655544 3455555556666666666666666666555443 3344455555556666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 023133 151 VGRVNDMLNEFASMKEA 167 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~ 167 (287)
.|++++|...|+...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 98 LGEPESALKALDLAIEI 114 (135)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666665554
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=1.9e-05 Score=63.40 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=57.2
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCchH
Q 023133 113 FAKSRQIEKALLIFDHIKGLKCKPDLI-TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD-FISYNTLLNNLRKIRRLD 190 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 190 (287)
+...|++++|+..++.+... .|+.. -+......+.+.++..+|.+.++.+.... |+ ....-.+..++.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChH
Confidence 34445555555555555443 23322 23334445555555555555555555432 22 333344445555555555
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+|..++++..... +.|...|..|..+|...|+..++.....+..
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 5555555554432 3344555555555555555555544444443
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=2.9e-05 Score=70.75 Aligned_cols=267 Identities=11% Similarity=0.012 Sum_probs=170.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCC------CCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----HHHH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNI------FLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS----DCYT 72 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 72 (287)
...+...|++++|...+......-. .+. .....+...+...|+++.|...+++....-...+. ...+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3445678899999998887644211 111 22333445567889999999999988763211121 2345
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCC--C-CHhh
Q 023133 73 NFARAFIMTDDCTQLLIFIEEVVQI----AS-PESIIVVNRIIFAFAKSRQIEKALLIFDHIKG----LKCK--P-DLIT 140 (287)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~ 140 (287)
.+...+...|++++|...+++.... |. .....++..+...+...|++++|...+++... .+.. + ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 5566677899999999999887643 21 11234556677788899999999999877644 2211 1 1223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC--CcCCHH--HH-
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEA--GVVP--DFISYNTLLNNLRKIRRLDLCLIYFREMGESG--IKPDLL--TY- 211 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~- 211 (287)
+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+....... ...... ..
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 445566677889999999999887543 1112 23445556667888999999999988875421 111111 10
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc---hHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 212 -TALIDSFGRTGNIEESLRLFNDMKQQQIRPS---IYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 212 -~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
...+..+...|+.+.|..++........... ...+..+..++...|++++|...++++...
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122445568999999999877654211111 112345667788999999999999998664
No 116
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.77 E-value=4.9e-05 Score=63.19 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD---LLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.|..+...|-..|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|+++++...
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 456666677777777777777777665432211 2244444445555555666666555543
No 117
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4.6e-06 Score=64.25 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 213 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.+.++++..|.+.+|.++|-......++.+..-.+.|..+|.+++.++.|.+++-++
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 366778888999999999988765545544555566778899999999998888665
No 118
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=4.6e-05 Score=62.59 Aligned_cols=192 Identities=12% Similarity=0.087 Sum_probs=113.4
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
++.+...|++++|.+..+++...++.+..++..-+.+.++.+.+++|+.+.+.-... ..+...+..=+.+..+.+..+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHH
Confidence 456677899999999999999888555578888888999999999998665443210 111111112233444677777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-------------------------C--CH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK-------------------------P--DL 138 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------------~--~~ 138 (287)
+|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.. | ..
T Consensus 97 ealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 97 EALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPE 172 (652)
T ss_pred HHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCc
Confidence 7777766211 122335555566677777788888777777544310 0 01
Q ss_pred hhHHHH---HHHHHhcCCHHHHHHHHHHHHHcC--------CC-CCh-----hHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 139 ITYNIV---LDILGRVGRVNDMLNEFASMKEAG--------VV-PDF-----ISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 139 ~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~--------~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
.+|..+ ...+...|++.+|+++++.....+ .. -+. ..-..+...+...|+.++|..++...++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 122222 234456778888888877762211 00 000 0112234455667777777777777665
Q ss_pred CC
Q 023133 202 SG 203 (287)
Q Consensus 202 ~~ 203 (287)
..
T Consensus 253 ~~ 254 (652)
T KOG2376|consen 253 RN 254 (652)
T ss_pred hc
Confidence 53
No 119
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=6.3e-05 Score=61.85 Aligned_cols=102 Identities=10% Similarity=0.067 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHH--------HHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcch
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFR--------EMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ--QIRPSI 243 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~ 243 (287)
...-..+......|+++.|.+++. .+.+.+..|. +...++..+.+.++.+.|..++.+.... .-.+..
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 344555666777889999998888 5555544444 4555677777777777777777776543 111222
Q ss_pred Hh----HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 244 YV----YRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 244 ~~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
.. +.-++..-.+.|+.++|..+++++.+.+|++.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~ 492 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDT 492 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchH
Confidence 22 33333334567999999999999988766554
No 120
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.73 E-value=8.7e-05 Score=61.75 Aligned_cols=273 Identities=9% Similarity=0.123 Sum_probs=163.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC-----------C
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLLVSSRT-----------L 66 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~ 66 (287)
|..+...|-..|+++.|..+|++..+-....- .+|..-...=.+..+++.|++++++.....-+ +
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 56677888889999999999988766543321 34555555556677788888888776532111 1
Q ss_pred ------CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh-
Q 023133 67 ------SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI- 139 (287)
Q Consensus 67 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 139 (287)
+...|...+..--..|-++....+++++++..+- ++.+.-.....+-...-++++.++|++-...=-.|.+.
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1124444555555667888888888888877643 33333334444555667888888888765543234433
Q ss_pred hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH--HHhcCchHHHHHHHHHHhhCCCcCC--HHHHH
Q 023133 140 TYNIVLDILGR---VGRVNDMLNEFASMKEAGVVPDFISYNTLLNN--LRKIRRLDLCLIYFREMGESGIKPD--LLTYT 212 (287)
Q Consensus 140 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~ 212 (287)
.|+.-+.-+.+ .-+++.|..+|++..+ |++|...-+..|+-+ --+-|-...|..++++.... +++. ...|+
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myn 626 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYN 626 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHH
Confidence 56665555443 3368899999999988 666544322222221 22346677788888886543 2332 23567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhH---HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 213 ALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVY---RSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 213 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
..|.--...--+.....+|++.++. -|+...- -...+.=++.|..+.|..+|.-..+..+...++
T Consensus 627 i~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~ 694 (835)
T KOG2047|consen 627 IYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTT 694 (835)
T ss_pred HHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCCh
Confidence 6665544444445556677776664 3443332 222334456778888888877766554433333
No 121
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=1.6e-06 Score=60.25 Aligned_cols=116 Identities=13% Similarity=0.088 Sum_probs=58.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHhcCCHHH
Q 023133 46 TNDIDLSFQILKDLLVSSRTLS--SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPES--IIVVNRIIFAFAKSRQIEK 121 (287)
Q Consensus 46 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 121 (287)
.++...+...++.+......-. ....-.+...+...|++++|...|+.+......++ ....-.+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555421110 11222234555556666666666666655542222 1233334555666666666
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
|+..++..... ......+.....+|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666554322 22333445555666666666666666654
No 122
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.67 E-value=2e-06 Score=69.03 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=101.9
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..-..|+..+...++++.|+.+++++.+.. |+ ....+++.+...++..+|.+++++.++.. +.+...+......+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445556667777889999999999998764 44 34457778878888889999999888765 56778888888889
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPD-LITYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
.+.++++.|.++.+++.+. .|+ -.+|..|..+|.+.|+++.|+..++.+.-
T Consensus 245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999999877 454 45899999999999999999999988753
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.3e-05 Score=64.86 Aligned_cols=227 Identities=15% Similarity=0.108 Sum_probs=98.5
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHH-------H
Q 023133 37 NCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNR-------I 109 (287)
Q Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l 109 (287)
..+.++..+..++..+++-+...++.. -+..-++....++...|.+.+.........+.|. ....-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 344555555555666666665555443 2333344444555555555555555544444431 11111111 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCch
Q 023133 110 IFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRL 189 (287)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (287)
..+|.+.++++.+...|.+.......|+.. .+....+++........-.+...- .-...=...+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A-~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKA-EEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHH-HHHHHHHHHHHhccCH
Confidence 224444555666666665544322222221 112222333332222222111100 0011113334445555
Q ss_pred HHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 190 DLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
..|...|.++++.. +-|...|....-+|.+.|.+..|++-.+..++.. ++....|..=..++....+++.|++.|.+.
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555543 3344555555555555555555555555444431 122223333333344444555555555555
Q ss_pred hhcCCCCCC
Q 023133 270 NSSLSDLAG 278 (287)
Q Consensus 270 ~~~~~~~~~ 278 (287)
+...|+...
T Consensus 453 le~dp~~~e 461 (539)
T KOG0548|consen 453 LELDPSNAE 461 (539)
T ss_pred HhcCchhHH
Confidence 555544433
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2e-05 Score=57.98 Aligned_cols=189 Identities=13% Similarity=0.107 Sum_probs=140.1
Q ss_pred hcCChhHHHHHHHHHhhc---C-CCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 11 KAGNVSAAVRLLQSLRDK---N-IFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~---~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
...+.++..+++.++... + ..++ ..|..++-+....|+.+.|...++++... .+-+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 346788899998887643 3 2233 57777888888899999999999998876 332333332223335567999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
++|+++++.+++.+ |.|..++..-+......|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999887 677778877777777888888888888777654 3579999999999999999999999999999
Q ss_pred HHcCCCCChhHHHHHHHHHHh---cCchHHHHHHHHHHhhCC
Q 023133 165 KEAGVVPDFISYNTLLNNLRK---IRRLDLCLIYFREMGESG 203 (287)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 203 (287)
.-..+. +...+..+...+.- ..+...+.++|.+.++..
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 875322 44444444444333 446778999999988763
No 125
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.66 E-value=3.6e-05 Score=61.84 Aligned_cols=138 Identities=11% Similarity=0.152 Sum_probs=83.8
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCCHHH
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD-LITYNIVLDILGRVGRVND 156 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 156 (287)
....++++.|+..++.++..- |.|+..+....+.+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 334566666666666666553 455566666666666777777777777666655 344 3344555666666777777
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 157 MLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
|+.+++....... -|...|..|.++|...|+..++..-..+ .|...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 7776666655533 2566677777777766666666554333 23445666666666666655
Q ss_pred C
Q 023133 237 Q 237 (287)
Q Consensus 237 ~ 237 (287)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 4
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=8.2e-06 Score=60.34 Aligned_cols=218 Identities=12% Similarity=0.067 Sum_probs=142.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHH-HHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQ-ILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
+-++|...|++.... .+++... .++ .+...+.......++-+.-+. +.+.+......-+......-...|+..+
T Consensus 47 ~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~ 122 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDG 122 (299)
T ss_pred HHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCC
Confidence 345666666655443 3444444 344 555555555555555554443 4444444433333333334456788999
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCCHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR----VGRVNDML 158 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 158 (287)
++++|++..+.. -.......+ ...+.+..+++-|.+.+++|.+. .+..|.+.|..++.+ .+.+.+|.
T Consensus 123 ~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 123 DFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred ChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 999999988762 122333333 34567888999999999999874 466677767666653 45789999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG-NIEESLRLFNDMKQQ 237 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 237 (287)
-+|++|-++ ..|+..+.+-...++...|++++|..+++...... ..+..+...++-+-...| +.+...+.+.++...
T Consensus 194 yifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 194 YIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999875 46788899999999999999999999999998775 334555544444444444 445566777777754
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.61 E-value=8.9e-06 Score=56.56 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=63.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH--HHHHHHHHHHHhcCCHHH
Q 023133 151 VGRVNDMLNEFASMKEAGVVPD--FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL--LTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 226 (287)
.++...+...++.+.+....-. ....-.+...+...|++++|...|+.+......|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666655432210 122233445566666777777777666665322221 123345566666677777
Q ss_pred HHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
|+..++..... ......+....+.+...|++++|...|++.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77766553332 223344555666666777777777666653
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.60 E-value=5e-06 Score=66.77 Aligned_cols=126 Identities=12% Similarity=0.195 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (287)
.....|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++..+.... +...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 34445666666778888888888888765 344 3345677777777888888888887765322 556666666677
Q ss_pred HhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.+.++.+.|..+.+++.+.. +-+..+|..|..+|...|+++.|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888762 3344588888888888888888888887764
No 129
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=8.5e-05 Score=64.98 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=144.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCC-CCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNI-FLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
..+.++...+-..+-+++++++.-.+. .+. .....|+-.-+-.-+..++.+..+++..-. .|+ +...+...
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD-a~~------ia~iai~~ 1061 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD-APD------IAEIAIEN 1061 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC-chh------HHHHHhhh
Confidence 456778888888888888888754433 333 333333333333445566666666664332 122 22333444
Q ss_pred CChHHHHHHHHHHHhcC---------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh
Q 023133 82 DDCTQLLIFIEEVVQIA---------------------SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT 140 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (287)
+-+++|..+|++....+ --..+.+|..+..+-.+.|.+.+|++-|-+. .|...
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~ 1135 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSN 1135 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHH
Confidence 44555555554321100 0123567777888888888888887776553 36667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
|..++....+.|.|++-.+++...++....|... +.++-+|++.++..+..+++. .||......+.+-|..
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhh
Confidence 8888888888888888888887777766655544 567778888887776655442 4666666666777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 221 TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.|.++.|.-+|.. +..|..|...+...|++..|.+.-+++
T Consensus 1207 ~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777766665543 334555666666666666665554444
No 130
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.58 E-value=3.9e-06 Score=67.74 Aligned_cols=124 Identities=12% Similarity=0.042 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh
Q 023133 63 SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQI--ASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT 140 (287)
Q Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (287)
+.+.+......++..+....+.+.+..++.+.... ....-..+.+++++.|.+.|..++++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45566777888888888888899999988888755 2223344557899999999999999999999889999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI 186 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 186 (287)
+|.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999987777666777777666666655
No 131
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.57 E-value=1.5e-07 Score=47.77 Aligned_cols=33 Identities=45% Similarity=0.757 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD 172 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 172 (287)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.52 E-value=2.3e-07 Score=47.07 Aligned_cols=33 Identities=42% Similarity=0.827 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 023133 210 TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242 (287)
Q Consensus 210 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 242 (287)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666655
No 133
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.52 E-value=0.00022 Score=55.06 Aligned_cols=227 Identities=10% Similarity=0.092 Sum_probs=172.3
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCc---hhHH------------HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYN------------CVLVASAETNDIDLSFQILKDLLVSSRTLSSDCY 71 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 71 (287)
..+.+.|.+++|..=|+.+..+++... +++. ..+..+.-.|+...|+.....+++.. +-+...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 357789999999999999998876433 2322 23345566789999999999998753 4477788
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh----HHHH---
Q 023133 72 TNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT----YNIV--- 144 (287)
Q Consensus 72 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l--- 144 (287)
..-..+|...|++..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++-.+. .||... |..|
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 888899999999999999998887776 455566666788889999999999999998876 466542 2111
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH
Q 023133 145 ------LDILGRVGRVNDMLNEFASMKEAGVVPDF---ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215 (287)
Q Consensus 145 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 215 (287)
+......++|.++.+-.+...+....... ..+..+-.++...+++.+|++...+.++.. +.|+.++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 12345678888888888887776433222 334556677778899999999999998763 33477888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 023133 216 DSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
.+|.-...++.|+.-|+...+.+
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999988753
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.50 E-value=0.00058 Score=59.08 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=149.9
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHH--HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVA--SAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQ 86 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 86 (287)
....+++.+|....+.+.+..+.. .|..++.+ ..+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 456788899999999988877554 45555554 46889999999888887655433 78888888899999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-C---------HHH
Q 023133 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG-R---------VND 156 (287)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 156 (287)
|..++++..... |+......+..+|.+.+.+.+-.++--++-+. ++.....+=.+++.+.+.- . ..-
T Consensus 96 ~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 999999998764 55777777888899988887655554444432 1233444444444443221 1 234
Q ss_pred HHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCchHHHHHHH-HHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 157 MLNEFASMKEAG-VVPDFISYNTLLNNLRKIRRLDLCLIYF-REMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 157 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
|.+.++.+.+.+ ..-+..-...-...+...|++++|.+++ ....+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 555666665543 2222222223334455678899999998 34444333444555556677888888888888888888
Q ss_pred HhCC
Q 023133 235 KQQQ 238 (287)
Q Consensus 235 ~~~~ 238 (287)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8765
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=7e-06 Score=54.88 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCC--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcchHhHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGI--KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI--RPSIYVYRSLI 250 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li 250 (287)
++..+...+.+.|++++|.+.+..+.+... ......+..+..++.+.|++++|.+.|+.+..... +.....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566666777777777777777765421 11133455577777777777778777777765321 11234566666
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 251 DNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
.++.+.|++++|.+.++++....|+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 7777778888888888887777776543
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.49 E-value=3.2e-07 Score=46.22 Aligned_cols=32 Identities=41% Similarity=0.637 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVP 171 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 171 (287)
+|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 137
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.48 E-value=5.8e-06 Score=52.46 Aligned_cols=97 Identities=21% Similarity=0.208 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (287)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3444555556666666666666665542 2233455556666666666777777666666542 2233456666666666
Q ss_pred cCChHHHHHHHHHHhhcCC
Q 023133 256 MGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~ 274 (287)
.|++++|...+.+..+..|
T Consensus 81 ~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 81 LGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHhHHHHHHHHHHHHccCC
Confidence 6777777777766655544
No 138
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=5.9e-05 Score=64.55 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=33.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 178 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.+++..|-.|+.++|.++-++ .-|....-.|...|...|++.+|..+|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344444445555555554433 2255556678889999999999998887764
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=7.9e-05 Score=65.72 Aligned_cols=229 Identities=10% Similarity=0.058 Sum_probs=155.9
Q ss_pred HhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHhcCCCC
Q 023133 25 LRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD-CYTNFARAFIMTDDCTQLLIFIEEVVQIASPE 101 (287)
Q Consensus 25 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 101 (287)
..-.+..|. .++..|+..+...+++++|.++.+..++. .|+.. .|..+...+.+.++...+..+
T Consensus 21 ~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv----------- 87 (906)
T PRK14720 21 ADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL----------- 87 (906)
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------
Confidence 334455555 78999999999999999999999977764 44433 333333355555553333222
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 023133 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181 (287)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 181 (287)
.+++......++..+..+...+.+. .-+...+..+..+|-+.|+.++|..+++++.+.... |..+.|.+..
T Consensus 88 ------~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY 158 (906)
T PRK14720 88 ------NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLAT 158 (906)
T ss_pred ------hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHH
Confidence 4555555666665555555666654 235557888999999999999999999999998744 8889999999
Q ss_pred HHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHH---H--HHhcCCHHHHHHHHHHHHhC-CCCcchHhHHHHHHHHHh
Q 023133 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALID---S--FGRTGNIEESLRLFNDMKQQ-QIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 255 (287)
.|... ++++|.+++.+.++.- .+..-|+.+.. - .....+++.-.++.+.+... |..--+.++..+-..|..
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~~--i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYRF--IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHHH--HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 99999 9999999999887641 11112222211 1 11233444555555555533 333345566666778888
Q ss_pred cCChHHHHHHHHHHhhcCCCCCC
Q 023133 256 MGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
.++|+++..+++.+.+..|.+..
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCcchh
Confidence 89999999999999998886543
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.48 E-value=1e-05 Score=54.10 Aligned_cols=98 Identities=11% Similarity=0.071 Sum_probs=55.0
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCC--CcHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRT--LSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASP--ESIIVVNRII 110 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 110 (287)
++..++..+.+.|++++|...+..+...... .....+..+..++.+.|+++.|...++.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455555566666666666666666543211 11234444556666666666666666666554311 1234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 023133 111 FAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.++.+.|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666554
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.47 E-value=6.6e-06 Score=66.45 Aligned_cols=125 Identities=13% Similarity=0.073 Sum_probs=103.2
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 023133 97 IASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL--KCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI 174 (287)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 174 (287)
.+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344667777888888888888999999999988765 111223355799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (287)
+++.++..+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998776666777776666666554
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.46 E-value=6.1e-06 Score=66.27 Aligned_cols=102 Identities=7% Similarity=-0.080 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH
Q 023133 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224 (287)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (287)
...+...|++++|+..|++..+.... +...|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 45566788999999999998876543 66778888888889999999999999888764 34666788888888899999
Q ss_pred HHHHHHHHHHHhCCCCcchHhHHHHH
Q 023133 225 EESLRLFNDMKQQQIRPSIYVYRSLI 250 (287)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li 250 (287)
++|...|++..+. .|+......++
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 9999999988874 45544444443
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.46 E-value=4.5e-07 Score=45.66 Aligned_cols=33 Identities=36% Similarity=0.784 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 023133 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 241 (287)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355666666666666666666666666555554
No 144
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=2.6e-05 Score=66.62 Aligned_cols=230 Identities=13% Similarity=0.139 Sum_probs=153.5
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHh
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS---------SRTLSSDCYTNFARAFI 79 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~ 79 (287)
|...|+.|.|.+-.+.++... .|..+.+.|.+..+.+-|.-.+..|... .-.|+ .+=..+.....
T Consensus 738 yvtiG~MD~AfksI~~IkS~~-----vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAi 811 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSDS-----VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAI 811 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhhH-----HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHH
Confidence 556788899888887776443 7999999999998888877666665321 11222 22223344456
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLN 159 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 159 (287)
..|.+++|+.++++-.+. ..|=..|-..|.|++|.++-+.-.+.. =..||..-..-+-..++.+.|++
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHH
Confidence 778999999998876553 234455777899999998876543322 22355555566666777888887
Q ss_pred HHHHHH----------HcC---------CCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 160 EFASMK----------EAG---------VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 160 ~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
.|++.. ... -..|...|......+-..|+.+.|+.+|....+ |-.++...+-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 776521 111 112445566666666677778888777776542 4456666677
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 221 TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
.|+.++|-++-++- -|......+...|-..|++.+|..+|.++..
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 78888888776542 2566667788889999999999998887743
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.45 E-value=0.00052 Score=56.18 Aligned_cols=133 Identities=8% Similarity=0.107 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHH
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF 218 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (287)
+|...+..-.+..-+..|..+|.++.+.+..+ .+...++++..+| .++..-|.++|+--.+.- .-+..-....++-+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHH
Confidence 34555666667777888888888888887776 6677778887665 677788888887765441 22334445667777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcc--hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 219 GRTGNIEESLRLFNDMKQQQIRPS--IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 219 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
...++-..+..+|++....++.|+ ...|..++.-=..-|+...+.++-+++....|
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 788888889999999888766655 46888898888888999999988888877666
No 146
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.40 E-value=1.9e-05 Score=61.28 Aligned_cols=130 Identities=13% Similarity=0.093 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI-LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777776666432 1223333333333 22244555566777666554 23355556666666
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPD---LLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+.+.++.+.|..+|++.... +.++ ...|...+..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666654 1221 13566666666666666666666666655
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.38 E-value=0.00014 Score=55.04 Aligned_cols=182 Identities=7% Similarity=-0.005 Sum_probs=112.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH---HHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDC---YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRII 110 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 110 (287)
..+......+.+.|++++|.+.|+++...-..+ ... .-.++.++.+.+++++|...+++.++..+.....-+...+
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 344455666678999999999999998763322 222 2456788899999999999999998876433223333333
Q ss_pred HHHHh--cC---------------C---HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 023133 111 FAFAK--SR---------------Q---IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV 170 (287)
Q Consensus 111 ~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 170 (287)
.+.+. .+ + ..+|+..|+++.+. -|+. .-..+|...+..+.+.
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~--- 173 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR--- 173 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH---
Confidence 33321 11 1 23444555555543 2333 3345555544444332
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHhhC--CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 171 PDFISYNTLLNNLRKIRRLDLCLIYFREMGES--GIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.-..- -.+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 174 la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 01111 24666678888888888888888764 223334566677888888888888887776554
No 148
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.37 E-value=2.4e-05 Score=53.84 Aligned_cols=96 Identities=8% Similarity=-0.026 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFG 219 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (287)
....+...+...|++++|..+|+.+...... +..-|..|..++...|++++|+..|....... +-|...+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3444555556677777777777776655433 45555666666666777777777777766654 345566666677777
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 023133 220 RTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~ 237 (287)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766543
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.37 E-value=1.5e-05 Score=50.47 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=7.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 023133 109 IIFAFAKSRQIEKALLIFDH 128 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~ 128 (287)
+...+...+++++|.+.++.
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 150
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00043 Score=60.83 Aligned_cols=211 Identities=12% Similarity=0.100 Sum_probs=119.8
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++..+++....+...+|.+. ..|+-+|
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAY 1176 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHH
Confidence 57888888888888887777666432 356778888888888888888888888777766555443 5677788
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCCCh
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG--------------------VVPDF 173 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~ 173 (287)
++.++..+.++++. -|+......+.+-|...|.++.|.-+|....... -..+.
T Consensus 1177 Akt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred HHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 88888877666542 2555555555555555555555554443321100 00133
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (287)
.||..+..+|...+.+.-| +|...++-....-..-|+.-|-..|-+++.+.+++...... +...-.|+-|.-.|
T Consensus 1250 ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLY 1323 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILY 1323 (1666)
T ss_pred hHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHH
Confidence 4444444444443333222 12222222333345556777777777777777766554210 12233455555445
Q ss_pred HhcCChHHHHHHH
Q 023133 254 KKMGKVDLAMTIF 266 (287)
Q Consensus 254 ~~~g~~~~a~~~~ 266 (287)
.+- ++++.++-+
T Consensus 1324 sky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1324 SKY-KPEKMMEHL 1335 (1666)
T ss_pred Hhc-CHHHHHHHH
Confidence 443 244444433
No 151
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.36 E-value=0.00022 Score=62.31 Aligned_cols=183 Identities=11% Similarity=0.068 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
...+...|-+..+.. +.-...|..|...|....+...|.+.|+...+.. ..|...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 566666666665554 2345678888888888888888999998888765 45667788888999999999999888333
Q ss_pred HHHcCCC-CChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 023133 164 MKEAGVV-PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242 (287)
Q Consensus 164 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 242 (287)
.-+.... .-...|....-.|.+.++...+..-|+...... +.|...|..+..+|...|++..|.++|.+.... +|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 2222110 011223334445677888888888888887664 456778888999999999999999999888763 454
Q ss_pred hHhHHHHH--HHHHhcCChHHHHHHHHHHhhc
Q 023133 243 IYVYRSLI--DNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 243 ~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
.. |...- -..+..|.+++|...+..+...
T Consensus 629 s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 629 SK-YGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred hH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 32 22222 2345678888888888777443
No 152
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.35 E-value=0.00012 Score=61.54 Aligned_cols=145 Identities=9% Similarity=-0.083 Sum_probs=103.3
Q ss_pred CCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--------chHHHHHHHHHHh
Q 023133 134 CKPDLITYNIVLDILGRV-----GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR--------RLDLCLIYFREMG 200 (287)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 200 (287)
.+.+...|...+.+.... +..+.|..+|++..+.... ....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 356778888888875432 2377899999999886432 3344554433332221 2234444444433
Q ss_pred hC-CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 201 ES-GIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 201 ~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
.. ....+...|..+.-.....|++++|...+++..+. .|+...|..+...+...|+.++|.+.++++....|..|+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 32 12445577887777777789999999999999986 4788899999999999999999999999999999988864
Q ss_pred hh
Q 023133 280 KD 281 (287)
Q Consensus 280 ~~ 281 (287)
--
T Consensus 490 ~~ 491 (517)
T PRK10153 490 YW 491 (517)
T ss_pred HH
Confidence 33
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.35 E-value=6.2e-05 Score=54.00 Aligned_cols=89 Identities=10% Similarity=0.145 Sum_probs=58.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS--SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIF 111 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 111 (287)
..+..+...+...|++++|...|++.......+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4566677777777888888888877765433322 3456667777777788888887777777654 344556666666
Q ss_pred HHHhcCCHHHHH
Q 023133 112 AFAKSRQIEKAL 123 (287)
Q Consensus 112 ~~~~~~~~~~a~ 123 (287)
.+...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 666666644433
No 154
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.35 E-value=1.8e-05 Score=50.67 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=36.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcC--------chHHHHHHHHHHhhCCCcCCHHHHHHHHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGV-VPDFISYNTLLNNLRKIR--------RLDLCLIYFREMGESGIKPDLLTYTALIDS 217 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 217 (287)
.+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-....+|+.|...+++|+..+|+.++..
T Consensus 34 ~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 34 SCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 33344555555555555555555 555555555555544322 122344455555555555555555555554
Q ss_pred HH
Q 023133 218 FG 219 (287)
Q Consensus 218 ~~ 219 (287)
+.
T Consensus 114 Ll 115 (120)
T PF08579_consen 114 LL 115 (120)
T ss_pred HH
Confidence 43
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.34 E-value=7.1e-07 Score=43.83 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=23.8
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcC
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKN 29 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~ 29 (287)
+||.||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 58888888888888888888888887766
No 156
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.33 E-value=2.1e-05 Score=50.31 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=57.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhHHHH
Q 023133 108 RIIFAFAKSRQIEKALLIFDHIKGLKC-KPDLITYNIVLDILGRVG--------RVNDMLNEFASMKEAGVVPDFISYNT 178 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (287)
..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344445555778888888888888877 778888888877766543 24466778888888889999999998
Q ss_pred HHHHHHh
Q 023133 179 LLNNLRK 185 (287)
Q Consensus 179 l~~~~~~ 185 (287)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8887654
No 157
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.32 E-value=0.00019 Score=62.75 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 49 IDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDH 128 (287)
Q Consensus 49 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 128 (287)
...++..|-+..+.. +.-...|..|...|....+...|.+.|++..+.+ +.+...+....+.|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444555544444322 1124567788888888888999999999999887 67888899999999999999999998544
Q ss_pred HhcCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcC
Q 023133 129 IKGLKCKPDL--ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206 (287)
Q Consensus 129 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 206 (287)
..+.. +.-. ..|....-.|...++...|..-|+......++ |...|..+..+|...|....|.++|.+.... +|
T Consensus 552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 33321 1112 23333444567888899999999988776654 7889999999999999999999999888765 45
Q ss_pred CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhC------CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 023133 207 DLLTYTAL--IDSFGRTGNIEESLRLFNDMKQQ------QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 207 ~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (287)
+. +|... .-..+..|.+.+|...+...... +..--..++-.+...+...|-...|.+++++..
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 43 33322 23345678999999888877632 222233444444445555565556666665543
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.29 E-value=5.4e-06 Score=48.81 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 214 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
+...+...|++++|.+.|+++++.. +-+...+..+..++...|++++|..+|+++.+..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566778888899999998888764 34677888888888888999999999988888888754
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.29 E-value=3.7e-06 Score=52.41 Aligned_cols=20 Identities=10% Similarity=0.296 Sum_probs=8.0
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 023133 109 IIFAFAKSRQIEKALLIFDH 128 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~ 128 (287)
+..+|.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444433
No 160
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.29 E-value=0.00018 Score=61.06 Aligned_cols=165 Identities=14% Similarity=0.159 Sum_probs=71.3
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 023133 44 AETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123 (287)
Q Consensus 44 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 123 (287)
.....|.+|+.+++.++..+ .-...|..+..-|+..|+++.|.++|-+. ..++-.|.+|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 33444555555555444332 12233444445555555555555554321 12334455555555555555
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC
Q 023133 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG 203 (287)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 203 (287)
++-.+... .......|-+-..-+-+.|++.+|.+++-.... |+ ..|..|-+.|..+..+++..+-...
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh-
Confidence 55444331 122223333333334444555555444322211 22 2344444445444444444332211
Q ss_pred CcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 204 IKPDLLTYTALIDSFGRTGNIEESLRLFND 233 (287)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 233 (287)
.-..|...+..-|...|++..|..-|-+
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 1112344445555555666665555433
No 161
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.26 E-value=0.00031 Score=59.73 Aligned_cols=137 Identities=18% Similarity=0.225 Sum_probs=75.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchH
Q 023133 111 FAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (287)
.+.....+|.+|+.+++.+.... .-..-|..+...|+..|+++.|.++|-+.- .++-.|..|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 33444556666666666555431 222334555566666666666666664421 2344556666667776
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.|.++-.+.... ......|-.-..-+-..|++.+|.+++-..- .|+ ..|..|-+.|..+..+++.++-
T Consensus 809 da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 809 DAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 666665554321 3334445555555566666666666654322 232 2455666777777766666554
No 162
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.26 E-value=4.7e-05 Score=59.08 Aligned_cols=128 Identities=13% Similarity=0.128 Sum_probs=58.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHH-HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVA-SAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
|-.+|...-+.+..+.|..+|.+..+.+....+.|...... +...++.+.|..+|+...+. .+.+...|...+..+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence 44555555555555555555555553332222333333333 22234444455555555543 33344445555555555
Q ss_pred cCChHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023133 81 TDDCTQLLIFIEEVVQIASPES---IIVVNRIIFAFAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 131 (287)
.++.+.|..+|++.+.. ++++ ..+|...++.=.+.|+++.+.++.+++.+
T Consensus 83 ~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555443 1111 13555555555555555555555554443
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=4.5e-06 Score=52.00 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=32.8
Q ss_pred CchHHHHHHHHHHhhCCCc-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHH
Q 023133 187 RRLDLCLIYFREMGESGIK-PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTI 265 (287)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (287)
|+++.|..+++++.+.... ++...+..+..+|.+.|++++|..+++. .+.+ ..+......+..++.+.|++++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445555555555443210 1222233345555555555555555544 2111 11122223334445555555555555
Q ss_pred HHH
Q 023133 266 FEE 268 (287)
Q Consensus 266 ~~~ 268 (287)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 164
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.24 E-value=2e-06 Score=42.16 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=12.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.22 E-value=9.6e-05 Score=52.81 Aligned_cols=80 Identities=10% Similarity=0.011 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTL--SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIF 111 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 111 (287)
..|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...+++..+.. +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 455666666666677777777776665442222 12355556666666677777776666666543 333344444554
Q ss_pred HHH
Q 023133 112 AFA 114 (287)
Q Consensus 112 ~~~ 114 (287)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 554
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.21 E-value=0.00018 Score=56.10 Aligned_cols=197 Identities=12% Similarity=0.158 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCHh
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQI----ASP-ESIIVVNRIIFAFAKSRQIEKALLIFDHIKG----LKCKPDLI 139 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ 139 (287)
..|......|...+++++|...|.+..+. +-+ .-...|.....+|.+ .++++|...+++..+ .| .|+..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 45677777788888999998888776432 211 122345555555544 488888888877643 34 33332
Q ss_pred --hHHHHHHHHHhc-CCHHHHHHHHHHHHHc----CCCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCc-----
Q 023133 140 --TYNIVLDILGRV-GRVNDMLNEFASMKEA----GVVPD--FISYNTLLNNLRKIRRLDLCLIYFREMGESGIK----- 205 (287)
Q Consensus 140 --~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 205 (287)
.+..+...|... |++++|++.|++..+. + .+. ..++..+...+.+.|++++|.++|+++......
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 566677777777 8888888888886442 2 111 245566777788888888888888887654222
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcc--hHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 206 PDLL-TYTALIDSFGRTGNIEESLRLFNDMKQQ--QIRPS--IYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 206 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.+.. .|...+-++...||...|.+.+++.... ++..+ ......|+.++ +.|+.+...+.+.+-
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 2222 2333344566678888888888887754 22222 23445555554 556655544444444
No 167
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.21 E-value=7.6e-05 Score=53.94 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=33.4
Q ss_pred CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 023133 100 PESIIVVNRIIFAFAK-----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 150 (287)
..+..+|..+++.|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 3455666666666654 35666666677777777777777777777766543
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.21 E-value=0.0012 Score=50.08 Aligned_cols=177 Identities=9% Similarity=0.076 Sum_probs=100.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHH---HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESIIVV---NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 150 (287)
....+...|++++|.+.|+++....+ .+...- -.++.++.+.+++++|...+++..+........-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 44445566777777777777766542 222222 34556677777777777777777665211111222222222221
Q ss_pred --cC---------------C---HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHH
Q 023133 151 --VG---------------R---VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210 (287)
Q Consensus 151 --~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 210 (287)
.+ + ..+|+.. +..++.-|-...-..+|...+..+... .- ..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~---la-~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR---LA-KY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH---HH-HH
Confidence 10 0 1122222 233333333333344444444443321 00 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQQ--QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (287)
--.+..-|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 114566788999999999999999875 333445667788899999999999999887664
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.20 E-value=0.0032 Score=54.74 Aligned_cols=226 Identities=9% Similarity=0.108 Sum_probs=150.8
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 023133 44 AETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAF--IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121 (287)
Q Consensus 44 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (287)
...+++..|+.-...+.+. .|+.. |..++.++ .+.|+.++|..+++.....+ ..|..+...+-..|...++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhH
Confidence 3567889999999988875 34433 44445554 58899999998888887766 3588999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-c---------hHH
Q 023133 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR-R---------LDL 191 (287)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~ 191 (287)
|..+|++..+. .|+......+..+|.+.+.+.+-.+.--+|-+. .+-+...|=.+++.+.... . ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999999876 577778888888999988877655544444332 1123333333444333321 1 224
Q ss_pred HHHHHHHHhhCC-CcCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 192 CLIYFREMGESG-IKPDLLTYTALIDSFGRTGNIEESLRLFN-DMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 192 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
|.+.++.+.+.+ .--+..-...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 666677776543 22222223333445667899999999994 4444433333444445566677788888888888888
Q ss_pred hhcCCCC
Q 023133 270 NSSLSDL 276 (287)
Q Consensus 270 ~~~~~~~ 276 (287)
....+|+
T Consensus 253 l~k~~Dd 259 (932)
T KOG2053|consen 253 LEKGNDD 259 (932)
T ss_pred HHhCCcc
Confidence 7777765
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=9.1e-05 Score=59.62 Aligned_cols=92 Identities=11% Similarity=0.045 Sum_probs=65.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
...+...|++++|++.|++..+.++.....|..+..++.+.|++++|+..+++.+... +.+...|..+..++...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3455667778888888877777766555677777777777788888887777777653 234556666777777777888
Q ss_pred HHHHHHHHHHhcC
Q 023133 86 QLLIFIEEVVQIA 98 (287)
Q Consensus 86 ~a~~~~~~~~~~~ 98 (287)
+|...|++.++..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 8887777777765
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=0.00012 Score=50.36 Aligned_cols=97 Identities=3% Similarity=-0.032 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
......+...+...|++++|..+|+.+.... +-+..-|-.|..++-..|++++|+..|......++. |...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 3444445555566666666666666665543 224445556666666666666666666666665543 55566666666
Q ss_pred HHhcCchHHHHHHHHHHhh
Q 023133 183 LRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~ 201 (287)
+...|+.+.|.+.|+..+.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.19 E-value=0.0011 Score=51.76 Aligned_cols=206 Identities=9% Similarity=0.122 Sum_probs=115.2
Q ss_pred ChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHhccCChHHHH
Q 023133 14 NVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-----SDCYTNFARAFIMTDDCTQLL 88 (287)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~ 88 (287)
++++|..+|++. ...|...+++++|.+.|.+........+ ...|.....++. ..++++|.
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHH
Confidence 566666665554 3344455555555555555432211111 122333333333 33777777
Q ss_pred HHHHHHHh----cCCCCc--HHHHHHHHHHHHhc-CCHHHHHHHHHHHhc----CCCCCC--HhhHHHHHHHHHhcCCHH
Q 023133 89 IFIEEVVQ----IASPES--IIVVNRIIFAFAKS-RQIEKALLIFDHIKG----LKCKPD--LITYNIVLDILGRVGRVN 155 (287)
Q Consensus 89 ~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~ 155 (287)
..+++..+ .| .++ ...+..+...|... |++++|.+.|++..+ .+ .+. ...+..+...+.+.|+++
T Consensus 95 ~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 95 ECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHH
Confidence 77766543 33 222 34666777778777 889999988877653 22 221 235667778888999999
Q ss_pred HHHHHHHHHHHcCCC-----CChh-HHHHHHHHHHhcCchHHHHHHHHHHhhC--CCcCC--HHHHHHHHHHHHh--cCC
Q 023133 156 DMLNEFASMKEAGVV-----PDFI-SYNTLLNNLRKIRRLDLCLIYFREMGES--GIKPD--LLTYTALIDSFGR--TGN 223 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~--~g~ 223 (287)
+|.++|++....... .+.. .|...+-++...|+...|.+.+++.... ++..+ ......|+.++-. ...
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 999999988664322 1222 2333444566678999999999988754 22222 2355667777754 334
Q ss_pred HHHHHHHHHHHHh
Q 023133 224 IEESLRLFNDMKQ 236 (287)
Q Consensus 224 ~~~a~~~~~~~~~ 236 (287)
+..++.-|+.+.+
T Consensus 253 f~~av~~~d~~~~ 265 (282)
T PF14938_consen 253 FTEAVAEYDSISR 265 (282)
T ss_dssp HHHHCHHHTTSS-
T ss_pred HHHHHHHHcccCc
Confidence 6666666665543
No 173
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.18 E-value=4.5e-05 Score=55.10 Aligned_cols=51 Identities=29% Similarity=0.411 Sum_probs=36.1
Q ss_pred CCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 023133 135 KPDLITYNIVLDILGR-----VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK 185 (287)
Q Consensus 135 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (287)
..+..+|..++..|.+ .|+++=....+..|.+.|+.-|..+|+.|+..+=+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK 99 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK 99 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence 4577777777777754 35666666677777777777777777777777654
No 174
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=2.3e-05 Score=59.09 Aligned_cols=100 Identities=12% Similarity=0.130 Sum_probs=68.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
-+.+.+++++|+..|.+.++.... |.+-|..=..+|++.|.++.|++=.+..+..+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 355677777888777777776433 56666667777777787777777777666543 2234577777777777788888
Q ss_pred HHHHHHHHHhCCCCcchHhHHHHH
Q 023133 227 SLRLFNDMKQQQIRPSIYVYRSLI 250 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li 250 (287)
|++.|++.++ +.|+-.+|..=+
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHH
Confidence 8777777775 466666554433
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.15 E-value=0.00039 Score=49.85 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD--LITYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
.+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+...
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555543321111 23444444555555555555555555444
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00046 Score=52.48 Aligned_cols=110 Identities=11% Similarity=0.035 Sum_probs=85.1
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCcchHhHHH
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT---GNIEESLRLFNDMKQQQIRPSIYVYRS 248 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 248 (287)
|...|-.|..+|...|+++.|..-|.+..+.. .++...+..+..++... .+..++..+|+++.+.+ +-|+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 78889999999999999999999999888753 45666666666665433 34677888999998763 456777778
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 249 LIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
|...+...|++.+|...|+.|.++.|.+.......
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 88889999999999999999988887666554443
No 177
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.14 E-value=0.00065 Score=50.14 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=24.5
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLV 61 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 61 (287)
+...|++++|.+.|+.+....+.++ .+...++.++.+.|+++.|...++++++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555554444333 3444444455555555555555555444
No 178
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.14 E-value=0.00014 Score=51.94 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVP--DFISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
.|..+...+...|++++|...|+........| ...++..+...+...|++++|...+++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444444555555555555555554332111 1234555555555555555555555555543
No 179
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.10 E-value=0.0037 Score=51.47 Aligned_cols=174 Identities=9% Similarity=0.042 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP-DLITYNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
.+.....++++...-...-..+|..+|+.-.+..-+..|..+|.+..+.+..+ ++...++++.-||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 55566667666654323334567888998889999999999999999887666 67788888887764 57888999998
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL--LTYTALIDSFGRTGNIEESLRLFNDMKQQ--- 237 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 237 (287)
--.+.- .-+..--...+.-+...++-..+..+|++....++.|+. ..|..++.--..-|+...+.++-+++...
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 855442 113333455677778889999999999999988666554 68999999999999999999998887643
Q ss_pred CCCcchHhHHHHHHHHHhcCCh
Q 023133 238 QIRPSIYVYRSLIDNLKKMGKV 259 (287)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~ 259 (287)
...+....-..+++-|.-.+.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 1222223334445555444443
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.10 E-value=0.00044 Score=45.89 Aligned_cols=57 Identities=11% Similarity=0.127 Sum_probs=25.8
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 023133 40 LVASAETNDIDLSFQILKDLLVSSRTLS--SDCYTNFARAFIMTDDCTQLLIFIEEVVQ 96 (287)
Q Consensus 40 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (287)
..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++...
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444555555555555544443322 12333344444444555555555544443
No 181
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.07 E-value=3.4e-05 Score=45.93 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcC-ChHHHHHHHHHHhhcCC
Q 023133 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG-KVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~ 274 (287)
+...|..+...+...|++++|+..|++.++.. +.+...|..+..++...| ++++|++.+++..+..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566777777777777777777777777653 335566777777777777 57777777777776655
No 182
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.001 Score=52.77 Aligned_cols=260 Identities=12% Similarity=0.001 Sum_probs=158.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 85 (287)
..+.+..++.+|+..+....+..+.....|..-+..+...|++++++--.+.-.+. +|. .......-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 45566777888888888887776654456666666677777777776655554332 221 112222333333333333
Q ss_pred HHHHHHH---------------HHHhcCC-CCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHH--H
Q 023133 86 QLLIFIE---------------EVVQIAS-PESIIVVNRI-IFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVL--D 146 (287)
Q Consensus 86 ~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~ 146 (287)
+|.+.++ ....... +|....+..+ ..++.-.|++++|.+.-....+.. ..+ .+...+ .
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhccc
Confidence 3333322 1111111 2333333333 245566788888888777666542 122 233333 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHH-------------HHHHHHhcCchHHHHHHHHHHhhC---CCcCCHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNT-------------LLNNLRKIRRLDLCLIYFREMGES---GIKPDLLT 210 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 210 (287)
++...++.+.|...|++.+..+ |+...-.. =..-..+.|++..|.+.|.+.+.. .+.|+...
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 3446778888888888877653 44322211 122356788999999999998753 34566677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
|........+.|+.++|+.-.++..+. .|. +..+..-..++...++|++|.+-|++..+...+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 777777888999999999999888764 222 223344445667788999999999999777665
No 183
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.06 E-value=0.00074 Score=56.98 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhH
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVY 246 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 246 (287)
+...|..+.......|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++.... .|...+|
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 3455665555555567777777777777766 356667777777777777777777777777653 4544443
No 184
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.00042 Score=51.61 Aligned_cols=136 Identities=14% Similarity=0.042 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH-----H
Q 023133 142 NIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI-----D 216 (287)
Q Consensus 142 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 216 (287)
++++.++.-.|.+.-....+++..+...+.++.....+.+.-.+.|+.+.|..+|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 45555555666666666677776666555566666667777777777777777777665432233333333332 2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 217 SFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 217 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
.|.-++++.+|...+.+....+ +.|+..-+.-.-+..-.|+..+|.+.++.|....|....
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 3445566666666666666542 223333343333444456667777777777666554443
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.04 E-value=0.0037 Score=49.35 Aligned_cols=241 Identities=17% Similarity=0.183 Sum_probs=137.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-----hhHHHHHHHHhhcCChhHHHHHHHHHHHhc----------CCC
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-----NAYNCVLVASAETNDIDLSFQILKDLLVSS----------RTL 66 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------~~~ 66 (287)
|..+...-...|+.+-|..+++.=+......| .-+...+.-..+.|+.+....++-.+.+.- ..|
T Consensus 3 ~a~IA~~A~~~GR~~LA~~LL~~Ep~~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~~l~~s~f~~il~~~p 82 (319)
T PF04840_consen 3 YAEIARKAYEEGRPKLATKLLELEPRASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKRKLSLSQFFKILNQNP 82 (319)
T ss_pred HHHHHHHHHHcChHHHHHHHHHcCCChHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHHhCCHHHHHHHHHhCc
Confidence 56677778889999999888765322211111 234555566667777777766666655421 011
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHH--------------HHHhc-CCCCcHHHHHHHHHHHHhcCC-------HHHHHH
Q 023133 67 SSDCYTNFARAFIMTDDCTQLLIFIE--------------EVVQI-ASPESIIVVNRIIFAFAKSRQ-------IEKALL 124 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~--------------~~~~~-~~~~~~~~~~~l~~~~~~~~~-------~~~a~~ 124 (287)
.. ..+...|++..+.+....+|. +..+. ....-...+......|.+.++ .++..+
T Consensus 83 ~a---~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~~~~~~~~~~L~~a~~~y~~~k~~~f~~~~~e~q~~ 159 (319)
T PF04840_consen 83 VA---SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQKDVEEKISFLKQAQKLYSKSKNDAFEAKLIEEQIK 159 (319)
T ss_pred ch---HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 11 112223444334333333332 22111 111112223333444444444 122222
Q ss_pred HHHHHh----cCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHh
Q 023133 125 IFDHIK----GLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 125 ~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 200 (287)
+++.-. +.+......+.+.-+.-+...|+...|.++-.+.. + |+..-|-..+.+++..++|++-.++...
T Consensus 160 Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s-- 233 (319)
T PF04840_consen 160 LLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS-- 233 (319)
T ss_pred HHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--
Confidence 222111 11212223355556677778888888887766553 3 6888899999999999999988876532
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHH
Q 023133 201 ESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTI 265 (287)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (287)
. -++.-|..++.+|.+.|...+|..+..++. +..-+..|.++|++.+|.+.
T Consensus 234 -k---KsPIGyepFv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 234 -K---KSPIGYEPFVEACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred -C---CCCCChHHHHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 1 234678889999999999999998887721 24456667788888887654
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.98 E-value=3.8e-05 Score=45.58 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=25.4
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.|++++|.+.|+++.+.. |.+..++..+..+|.+.|++++|..+++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555443 334444445555555555555555555555443
No 187
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.97 E-value=3.1e-05 Score=45.94 Aligned_cols=53 Identities=23% Similarity=0.236 Sum_probs=31.0
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh
Q 023133 10 CKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS 62 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 62 (287)
.+.|++++|+++|+.+....+..+.++..+..++.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566666666666666655544455556666666666666666666666543
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.97 E-value=0.00029 Score=53.91 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcchHhHH
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL----LTYTALIDSFGRTGNIEESLRLFNDMKQQQ--IRPSIYVYR 247 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~ 247 (287)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.- -+.....+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555445668888888888888765 2332 456677788888888888888888887541 111234455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 248 SLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
.+...+...|+.++|..+|+++.+..|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 556667788888888888888888887654
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.93 E-value=7.4e-05 Score=45.04 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=48.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhH
Q 023133 216 DSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDF 282 (287)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (287)
..|.+.+++++|.++++.+.+.+ +.+...+.....++...|++++|.+.|++..+..|+.+.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 45677888888888888888753 3456667777777888888888888888888887766655443
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00023 Score=53.88 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=93.3
Q ss_pred HHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 023133 42 ASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (287)
-+.+.+++.+|+..|.+.++.. +-|...|..-..+|++.|.++.|.+-.+..+..+ +.-..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 4568889999999999988752 3356667778888999999999999988888876 4567789999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHH-hcCCHH---HHHHHHHHHHHcCCCCChh
Q 023133 122 ALLIFDHIKGLKCKPDLITYNIVLDILG-RVGRVN---DMLNEFASMKEAGVVPDFI 174 (287)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~---~a~~~~~~~~~~~~~~~~~ 174 (287)
|++.|++..+. .|+-.+|-.=+.... +.+... .+..-++.....|..|+..
T Consensus 168 A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 99999988876 677777755554433 233332 3444444444445545554
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.93 E-value=6.1e-05 Score=44.23 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=39.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS 62 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 62 (287)
+...+.+.|++++|++.|+.+.+..+..+.++..+..++.+.|++++|...|++.++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456667777777777777777776444467777777777777777777777777654
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.92 E-value=0.00099 Score=44.22 Aligned_cols=106 Identities=13% Similarity=0.030 Sum_probs=78.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHh
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTL--SSDCYTNFARAFI 79 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 79 (287)
+..++-..|+.++|+.+|++....|...+ ..+..+...+...|++++|+.++++.......+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45677789999999999999999887665 678888899999999999999999998753210 2223333445677
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (287)
..|+.++|.+.+-...... ...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~----~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAET----LPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 8899999999887665432 235555555554
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.0022 Score=48.90 Aligned_cols=102 Identities=9% Similarity=0.110 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCCHhhH
Q 023133 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR---QIEKALLIFDHIKGLKCKPDLITY 141 (287)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 141 (287)
+-|...|..|...|...|+++.|...|.+..+.. +++...+..+..++.... ...++..+|+++.... +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4467778888888888888888888888877765 456666666665554432 3457777888877664 3455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023133 142 NIVLDILGRVGRVNDMLNEFASMKEAG 168 (287)
Q Consensus 142 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 168 (287)
..|...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666677778888888888888887763
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.84 E-value=0.00061 Score=52.16 Aligned_cols=104 Identities=9% Similarity=0.114 Sum_probs=76.4
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhcCC--CCcHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS--SDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS--PESIIVVNRI 109 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l 109 (287)
..|...+....+.|++++|...|+.+++...... ...+..+..++...|++++|...|+.+.+... +.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 5666666666777899999999999987632211 34667788889999999999999999886532 2234555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHh
Q 023133 110 IFAFAKSRQIEKALLIFDHIKGLKCKPDLI 139 (287)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (287)
...+...|+.++|..+|+.+.+. .|+..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 77788899999999999988876 35544
No 195
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.84 E-value=0.0099 Score=47.59 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLK---CKPDLITYNIVLDILGR---VGRVNDMLNEFASMKEAGVVPDFISYN 177 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (287)
.+...++-.|-...+++..+++++.+...- +......-....-++.+ .|+.++|+.++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455567888999999999999998641 11112222234445556 889999999999966666677888888
Q ss_pred HHHHHHHh---------cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC----HHHHHHHH---HH-HHhCCC-
Q 023133 178 TLLNNLRK---------IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN----IEESLRLF---ND-MKQQQI- 239 (287)
Q Consensus 178 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~---~~-~~~~~~- 239 (287)
.+.+.|-. ....++|.+.|.+.-+. .||..+=-.++..+...|. -.+..++- .. +.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88776533 22467788888876654 3444321112222222232 12222322 22 223332
Q ss_pred --CcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 240 --RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 240 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
..+---+.+++.+..-.|++++|.+..++|.+..|...-..+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~ 345 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL 345 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence 33455667788888899999999999999988766554444433
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.81 E-value=0.00017 Score=42.92 Aligned_cols=60 Identities=15% Similarity=0.334 Sum_probs=27.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHh
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR-QIEKALLIFDHIK 130 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 130 (287)
.|..+...+...|++++|+..|++.++.. +.+..+|..+..+|...| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443 334444444444444444 3444444444433
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.0084 Score=44.28 Aligned_cols=64 Identities=11% Similarity=0.177 Sum_probs=34.9
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRT--LSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIA 98 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 98 (287)
.+......+.+.|++.+|...|+.+...-.. --....-.++.++.+.|+++.|...++++++..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344445556667777777777777654211 112334445666666677777777777666553
No 198
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.75 E-value=0.0091 Score=44.68 Aligned_cols=58 Identities=10% Similarity=0.237 Sum_probs=37.2
Q ss_pred HHHhhcCChhHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 023133 41 VASAETNDIDLSFQILKDLLVSS--RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIA 98 (287)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 98 (287)
..-.+.|++++|.+.|+.+...- -+-...+...++.++.+.++++.|...+++.++..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 34446777777777777776542 11233455556666777777777777777776654
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.71 E-value=0.017 Score=46.73 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=48.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 61 (287)
|-.||.-|...|..++..+++++|....+..+.+|..-+.+-...+++..+..+|.+.+.
T Consensus 45 ~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 45 YFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 678999999999999999999999988777667888777776667777777777766544
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.69 E-value=0.0017 Score=45.15 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcchHhH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ-----QQIRPSIYVY 246 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 246 (287)
+...++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44556666777888888888888877664 55667788888888888888888888877753 3777776553
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.014 Score=41.45 Aligned_cols=126 Identities=10% Similarity=0.022 Sum_probs=75.6
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhHH
Q 023133 100 PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG---VVPDFISY 176 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 176 (287)
-|++.--..|..+....|+..+|...|++...--+.-|....-.+..+....+++..|...++.+-+.+ -.|| +-
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 355555556666777777777777777766543333455555666666666777777777777765543 1222 33
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 023133 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLR 229 (287)
Q Consensus 177 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 229 (287)
..+.+.+...|....|..-|+..... -|+...-......+.+.|+.+++..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 44556666677777777777776665 4454444344445566666555544
No 202
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.54 E-value=0.0018 Score=43.42 Aligned_cols=86 Identities=21% Similarity=0.277 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhh---------------CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGE---------------SGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
|..++..++.++++.|+.+....+++..=. ....|+..+..+++.+|+..|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 457888999999999999999998876521 12457888889999999999999999999998874
Q ss_pred C-CCCcchHhHHHHHHHHHhcC
Q 023133 237 Q-QIRPSIYVYRSLIDNLKKMG 257 (287)
Q Consensus 237 ~-~~~~~~~~~~~li~~~~~~g 257 (287)
. +++.+..+|..|+.-....-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 4 67777888888888654443
No 203
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.54 E-value=0.001 Score=39.97 Aligned_cols=56 Identities=9% Similarity=0.011 Sum_probs=36.6
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS 62 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 62 (287)
..|.+.+++++|.++++.+...++..+..+.....++.+.|++++|...+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666666777777776666666554466666666666666666666666666654
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.52 E-value=0.00052 Score=47.76 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-----hcCCCCcHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVV-----QIASPESIIVV 106 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~ 106 (287)
+...++..+...|+++.|..+++.+.... +.+...|..+|.++...|+...|.+.|+++. +.|++|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 56667777777888888888888887753 4567788888888888888888888887653 34777766543
No 205
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.48 E-value=0.0066 Score=40.77 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=62.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH---------------cCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 137 DLITYNIVLDILGRVGRVNDMLNEFASMKE---------------AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
|..++..++.++++.|+.+....+++..-. ....|+..+..+++.+|+..+++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456778888888888888888888766411 12457788888888888888888888888888764
Q ss_pred -CCCcCCHHHHHHHHHHHHh
Q 023133 202 -SGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 202 -~~~~~~~~~~~~l~~~~~~ 220 (287)
-+++.+...|..|+.-...
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 4566677788887775443
No 206
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.46 E-value=0.00069 Score=41.34 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-Ccc-hHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQ----QI-RPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
.+++.+...|...|++++|++.|++..+. |- .|+ ..++..+..++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666666777777777777777666532 11 122 44566666677777777777777776643
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.037 Score=43.86 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (287)
+.+..+.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-..+-.. +-++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34455666778899999999988775 68999999999999999999987765432 124588999999999
Q ss_pred hcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
+.|+..+|..+..++. +..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888722 244577788999999998765443
No 208
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.44 E-value=0.0051 Score=49.07 Aligned_cols=266 Identities=12% Similarity=0.092 Sum_probs=163.0
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHH--Hh--cCCC-CHHHHHHHHHH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLL--VS--SRTL-SSDCYTNFARA 77 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~~~-~~~~~~~l~~~ 77 (287)
.-+|+.|+...-..+|+...+-|...- ..|..|..+|.-.+++++|+++...=+ .+ |-+. .......|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 457899999999999999988876532 467777888888888999887643211 10 1110 11122223344
Q ss_pred HhccCChHHHHHHHHH----HHhcCCC-CcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHh--
Q 023133 78 FIMTDDCTQLLIFIEE----VVQIASP-ESIIVVNRIIFAFAKSRQ--------------------IEKALLIFDHIK-- 130 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~-- 130 (287)
+--.|.+++|.-...+ ..+.|-. .....+..+...|...|+ ++.|.++|.+=.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666544322 1222211 223445556666665442 233444443321
Q ss_pred --cCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCC-CChhHHHHHHHHHHhcCchHHHHHHHHHHh--
Q 023133 131 --GLKCK-PDLITYNIVLDILGRVGRVNDMLNEFASM----KEAGVV-PDFISYNTLLNNLRKIRRLDLCLIYFREMG-- 200 (287)
Q Consensus 131 --~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 200 (287)
+.|-. .....|..|...|.-.|+++.|+..-+.- ++.|-. .....+..+..++.-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 11100 11234566666677778899988765442 233321 123567888888888999999999988754
Q ss_pred --hCCC-cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 201 --ESGI-KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ-----QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 201 --~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
+.|- .....+.-.|..+|.-..++++|+.++.+-..- ...-....+.+|..+|...|..+.|+.+.+..+++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2221 223345567888888888999999988765421 12235677888999999999999999988877554
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.41 E-value=0.02 Score=39.92 Aligned_cols=90 Identities=8% Similarity=-0.128 Sum_probs=63.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH
Q 023133 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224 (287)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (287)
..-+...|++++|..+|.-+.-.+.. +..-|..|..++...+++++|...|......+ .-|...+-....+|...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34455778888888888887665543 55556667777777888888888887765443 23444455677788888888
Q ss_pred HHHHHHHHHHHh
Q 023133 225 EESLRLFNDMKQ 236 (287)
Q Consensus 225 ~~a~~~~~~~~~ 236 (287)
+.|...|....+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888887776
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.026 Score=40.14 Aligned_cols=160 Identities=12% Similarity=0.044 Sum_probs=116.3
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (287)
.-..+..+..+.=+++...+-..+-. ..-|+...-..|..+..+.|+..+|...|++...--+-.|....-.+.++..
T Consensus 58 ~a~~~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 58 HAHTLLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hhHHHHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 34455556666666666554443333 2467777777899999999999999999999987666778888899999999
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHH
Q 023133 115 KSRQIEKALLIFDHIKGLKCKP---DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (287)
..+++..|..+++.+-+.. | +..+.-.+...+...|.+..|..-|+.....-..|....| ....+.+.|+.++
T Consensus 136 a~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~e 211 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLRE 211 (251)
T ss_pred hhccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhH
Confidence 9999999999999987753 3 2334556778899999999999999999886544444443 3344556776666
Q ss_pred HHHHHHHHh
Q 023133 192 CLIYFREMG 200 (287)
Q Consensus 192 a~~~~~~~~ 200 (287)
+..-+..+.
T Consensus 212 a~aq~~~v~ 220 (251)
T COG4700 212 ANAQYVAVV 220 (251)
T ss_pred HHHHHHHHH
Confidence 655444443
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.037 Score=41.66 Aligned_cols=143 Identities=10% Similarity=0.084 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHH---
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL--- 180 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 180 (287)
.+-+.++..+.-.|.+.-....+.++++...+-+......|.+.-.+.|+.+.|..+|++..+..-+.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34556677777778888888888888876545566677788888888899999998888776554444444444443
Q ss_pred --HHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHH
Q 023133 181 --NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSL 249 (287)
Q Consensus 181 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (287)
..|.-++++..|...+.++...+ +.|....|.=.-+..-.|+...|++.++.|.+. .|...+.+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34556778888888888887764 345555555444555568889999999999875 4555554433
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.013 Score=44.32 Aligned_cols=88 Identities=9% Similarity=0.120 Sum_probs=41.4
Q ss_pred hcCChhHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHhcCCHH
Q 023133 45 ETNDIDLSFQILKDLLVSSR--TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASP--ESIIVVNRIIFAFAKSRQIE 120 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 120 (287)
+.|++..|...|...++... ......+-.|..++...|+++.|..+|..+.+.... --+..+--|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 44445555555555554321 111223334555555555555555555555443211 11233444445555555555
Q ss_pred HHHHHHHHHhcC
Q 023133 121 KALLIFDHIKGL 132 (287)
Q Consensus 121 ~a~~~~~~~~~~ 132 (287)
+|..+|+++.+.
T Consensus 233 ~A~atl~qv~k~ 244 (262)
T COG1729 233 EACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.31 E-value=0.081 Score=45.07 Aligned_cols=204 Identities=11% Similarity=0.127 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 51 LSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIA----SPESIIVVNRIIFAFAKSRQIEKALLIF 126 (287)
Q Consensus 51 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (287)
+.+.-++++.++|-.|+... +...|+-.|++.+|.++|.+--..+ .-.|...|. +..-|...|..++-..+.
T Consensus 618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~ 693 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLI 693 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHH
Confidence 33444566677777777654 3456777788998888886531111 001111111 222333344433333333
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH------HHHcCCCC---ChhHHHHHHHHHHhcCchHHHHHHHH
Q 023133 127 DHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS------MKEAGVVP---DFISYNTLLNNLRKIRRLDLCLIYFR 197 (287)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 197 (287)
++-.+. ..+..-=.+....+...|+.++|..+..+ +.+-+.+. +..+...+...+-+...+.-|.++|.
T Consensus 694 RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~ 771 (1081)
T KOG1538|consen 694 RKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL 771 (1081)
T ss_pred HHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence 221111 00111112233445566777777665322 12222222 33455555555666677788888888
Q ss_pred HHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchH-----------hHHHHHHHHHhcCChHHHHHHH
Q 023133 198 EMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY-----------VYRSLIDNLKKMGKVDLAMTIF 266 (287)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~ 266 (287)
.|-+. ..+++.....+++++|..+-+...+. .||+. -|.-.-.+|.++|+..+|.+++
T Consensus 772 k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vL 840 (1081)
T KOG1538|consen 772 KMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVL 840 (1081)
T ss_pred HhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHH
Confidence 77532 24677788899999999998887763 34432 2333446788899999999999
Q ss_pred HHHhh
Q 023133 267 EEMNS 271 (287)
Q Consensus 267 ~~~~~ 271 (287)
+++..
T Consensus 841 eQLtn 845 (1081)
T KOG1538|consen 841 EQLTN 845 (1081)
T ss_pred HHhhh
Confidence 88844
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.073 Score=42.75 Aligned_cols=166 Identities=9% Similarity=-0.008 Sum_probs=111.4
Q ss_pred HHHHHHHH-HHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHH----
Q 023133 68 SDCYTNFA-RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYN---- 142 (287)
Q Consensus 68 ~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 142 (287)
..++..+- .++.-.+++++|.+.--...+.. ..+......-..++.-.++.+.+...|++....+ |+...--
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~ 244 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASM 244 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhh
Confidence 34444333 45567789999998887777765 3333333333344556788899999999888763 5443211
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHH
Q 023133 143 ---------IVLDILGRVGRVNDMLNEFASMKEA---GVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT 210 (287)
Q Consensus 143 ---------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 210 (287)
.=..-..+.|++..|.+.|.+.+.. +..|+...|........+.|+..+|+.--++..+.+ ..-...
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syika 323 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKA 323 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHH
Confidence 1123356789999999999998764 345667778888888889999999998888877542 111123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
|..-..++...+++++|.+-++...+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444455677788999999999888764
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.024 Score=49.30 Aligned_cols=173 Identities=13% Similarity=0.097 Sum_probs=111.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
+..+++...++.|+.+-+.- +..+. .........+.+.|++++|...|-+-+.. +.|. .++.-|....
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHH
Confidence 45566666667776655442 22122 33444455567789999998888776532 2222 2556667777
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK-PDLITYNIVLDILGRVGRVNDMLNEF 161 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 161 (287)
+...-..+++.+.+.|. .+...-..|+.+|.+.++.++-.+..+.-. .|.. .| ....+..+.+.+-.++|..+-
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 77888888888888885 555666778999999999988887776654 2211 12 345667777777777777665
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHh
Q 023133 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 200 (287)
..... .......++ -..+++++|.+++..+.
T Consensus 487 ~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 54433 233344444 35688999998887764
No 216
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.11 Score=44.82 Aligned_cols=112 Identities=13% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH
Q 023133 136 PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215 (287)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 215 (287)
...-+.+--+.-+...|+-.+|.++-.+.+- ||...|-.=+.+++..+++++-+++-+... .+.-|...+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 3444555566667778888888887766553 688888888888999999988777665543 235577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHH
Q 023133 216 DSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIF 266 (287)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 266 (287)
.+|.+.|+.++|.+++.+.... . -...+|.+.|++.+|.++-
T Consensus 752 e~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 8999999999999988765421 1 4566777777777776543
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.18 E-value=0.0023 Score=39.00 Aligned_cols=61 Identities=30% Similarity=0.464 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhC----CC-cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGES----GI-KPD-LLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+|+.+...|...|++++|...|++..+. |- .|+ ..++..+..+|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555554421 10 111 3345555555566666666666555543
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=97.13 E-value=0.045 Score=38.24 Aligned_cols=92 Identities=9% Similarity=-0.048 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR 188 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (287)
..--+...|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+.. |...+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCC
Confidence 3444556788888888888776654 234445666777777778888888888776555432 44445556777778888
Q ss_pred hHHHHHHHHHHhhC
Q 023133 189 LDLCLIYFREMGES 202 (287)
Q Consensus 189 ~~~a~~~~~~~~~~ 202 (287)
.+.|...|....+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877763
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.014 Score=44.08 Aligned_cols=104 Identities=16% Similarity=0.133 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCC--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCc-chHhHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGI--KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ-QIRP-SIYVYRSLI 250 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~li 250 (287)
.|+.-+.. .+.|++..|..-|...++... .-....+-.|..++...|+++.|..+|..+.+. +-.| -+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 57766664 467789999999998887531 111234556889999999999999999988864 1122 236677788
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 251 DNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
.+..+.|+.++|...|+++.+..|+.+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 88889999999999999999998877643
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.016 Score=46.20 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh-HHHHHHH
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT-YNIVLDI 147 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~ 147 (287)
.++..+.-++.+.+++..|++...+.+..+ ++++-...--..++...|+++.|...|+++.+. .|+... -+.|+.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 345556677777788888888877777776 566666666777777788888888888877766 444443 3344443
Q ss_pred HHhcCCH-HHHHHHHHHHHH
Q 023133 148 LGRVGRV-NDMLNEFASMKE 166 (287)
Q Consensus 148 ~~~~~~~-~~a~~~~~~~~~ 166 (287)
--+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3333333 334666777644
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.10 E-value=0.023 Score=46.36 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 100 PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL----ITYNIVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
+.+...++.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666777777777777777777666655 3442 24666667777777777777777666654
No 222
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.08 E-value=0.052 Score=38.15 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=50.8
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH-HHHHH--HHHHhccCCh
Q 023133 10 CKAGNVSAAVRLLQSLRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD-CYTNF--ARAFIMTDDC 84 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~~ 84 (287)
.+.+..++|+.-|..+.+.|...- -+.........+.|+-..|...|.+.-.....|... -...| .-.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344555555555555555443311 111222223344555555555555554433233221 11111 1122344455
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
+......+.+-..+.+.-...-..|.-+-.+.|++.+|.+.|..+.
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 5444444444433333333334444444445555555555555443
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.06 E-value=0.058 Score=44.81 Aligned_cols=158 Identities=14% Similarity=0.098 Sum_probs=76.9
Q ss_pred HHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 023133 42 ASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (287)
...-.++++.+.++...-.-.. ..+....+.+++-+.+.|..+.|+++.. |+. .-.+...+.|+++.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI 336 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence 3344566666555553111000 1123445556666666666666666532 211 12234456677766
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 122 ALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
|.++.++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66654432 3555677777777777777777766665443 34455555566666666666666555
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 202 SGIKPDLLTYTALIDSFGRTGNIEESLRLFND 233 (287)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 233 (287)
.| . ++....++...|+.++..+++.+
T Consensus 402 ~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 402 RG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 54 1 33334444445666655555543
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.03 E-value=0.02 Score=39.02 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=44.3
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (287)
..+.|++++|.+.|+.+..+-+.++ .+...++.+|.+.++++.|...+++.++........-|...+.+++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 4466777777777777777665555 4566667777777777777777777766543333334444444444
No 225
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.098 Score=40.95 Aligned_cols=150 Identities=12% Similarity=0.031 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH----HHHHHHHHhcCchHH
Q 023133 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY----NTLLNNLRKIRRLDL 191 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~ 191 (287)
.|...+|-..++++.+.- +.|...++-.=.+|..+|+...-...+++.... -.||...| .....++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 455555555555555432 445555555556666666666666666555433 11222222 222233445566666
Q ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcchHhHHHHHHHHHhcCChHHHHHHHHH
Q 023133 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ---QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (287)
|.+.-++..+.+ +.|.-.-.+..+.+...|++.++.+++.+-... +...-...|-...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666665543 344445555556666666666666665544321 1111111222333334455666666666654
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.96 E-value=0.14 Score=41.18 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 207 DLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
+--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3344566677777777777777777777765
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.95 E-value=0.1 Score=39.28 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcc---hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPS---IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 214 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
+..-|.+.|.+..|..-+++|.+. .+-+ ...+-.+..+|...|-.++|.+.-+-+....|+.+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 456688888888888888888876 2222 33456667788888998888888888877777664
No 228
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.94 E-value=0.012 Score=44.72 Aligned_cols=51 Identities=27% Similarity=0.300 Sum_probs=37.4
Q ss_pred CCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 023133 135 KPDLITYNIVLDILGR-----VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK 185 (287)
Q Consensus 135 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (287)
..|..+|-..+..+.. .++++=....++.|.+.|+.-|..+|+.|+..+-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 4567777777777653 35677777777888888888888888888877644
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.93 E-value=0.2 Score=42.29 Aligned_cols=159 Identities=16% Similarity=0.093 Sum_probs=106.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCC-CCCCH-----hhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhHHHHH-
Q 023133 111 FAFAKSRQIEKALLIFDHIKGLK-CKPDL-----ITYNIVLDILGR----VGRVNDMLNEFASMKEAGVVPDFISYNTL- 179 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 179 (287)
....=.|+-+.+++.+.+..+.+ +.... -.|+..+..++. ....+.|.+++..+.+. -|+...|...
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~ 273 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFE 273 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 33445688888988888766532 22111 234555554443 45788999999999886 3666655443
Q ss_pred HHHHHhcCchHHHHHHHHHHhhCC-C--cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHH-HHh
Q 023133 180 LNNLRKIRRLDLCLIYFREMGESG-I--KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDN-LKK 255 (287)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~~-~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 255 (287)
.+.+...|++++|.+.|++..... - +.....+--+.-++.-.+++++|.+.|..+.+.. ..+..+|..+..+ +..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHh
Confidence 355677899999999999766321 0 1223345556777888999999999999999753 3345555544443 456
Q ss_pred cCCh-------HHHHHHHHHHhhc
Q 023133 256 MGKV-------DLAMTIFEEMNSS 272 (287)
Q Consensus 256 ~g~~-------~~a~~~~~~~~~~ 272 (287)
.|+. ++|.++|.++...
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHH
Confidence 7777 8999999988443
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.93 E-value=0.15 Score=40.84 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=123.7
Q ss_pred hcCChhHHHHHHHHHHHhcCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 023133 45 ETNDIDLSFQILKDLLVSSRTLSSDC--YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA 122 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 122 (287)
-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.+.|.++-+..-... +.-...+...+...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 346666666666666531 21111 1112222234566666666655554443 33345566666666666666666
Q ss_pred HHHHHHHhcC---------------------------------------CCCCCHhh-HHHHHHHHHhcCCHHHHHHHHH
Q 023133 123 LLIFDHIKGL---------------------------------------KCKPDLIT-YNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 123 ~~~~~~~~~~---------------------------------------~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
+++++.-... .+.||..- --.-..++.+.|+..++-.+++
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 6666543321 11333322 1223456777888888888888
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh-CCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE-SGIKP-DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 240 (287)
.+-+....|+. + .+..+.+.|+ .+..-+++..+ ..++| +..+-..+..+-...|++..|..--+...+ ..
T Consensus 288 ~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~ 359 (531)
T COG3898 288 TAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EA 359 (531)
T ss_pred HHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hC
Confidence 88776555542 2 2222334443 34443433321 11233 455666677777888888888777666665 46
Q ss_pred cchHhHHHHHHHHH-hcCChHHHHHHHHHHhhc
Q 023133 241 PSIYVYRSLIDNLK-KMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 241 ~~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~ 272 (287)
|....|..|.+.-. ..|+-.++..++-+..+.
T Consensus 360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 88888888887654 459999999999988776
No 231
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.92 E-value=0.069 Score=43.72 Aligned_cols=63 Identities=10% Similarity=0.021 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESI---IVVNRIIFAFAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 131 (287)
...++.+..+|...|++++|+..|++.++... .+. .+|..+..+|...|+.++|++.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P-d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNP-NPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555566666666666666666555541 222 2355566666666666666666655554
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.90 E-value=0.2 Score=41.80 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNL 183 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (287)
...+.++..+-+.|..+.|+++...-. .-.....+.|+.+.|.++.++. ++...|..|....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~A 357 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEA 357 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHH
Confidence 345556666666666666665543211 1223344566666665544322 2445666666666
Q ss_pred HhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
.+.|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....+|
T Consensus 358 L~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 358 LRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 666666666666655431 3344445555666666666665555544
No 233
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.89 E-value=0.016 Score=44.06 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=80.7
Q ss_pred CCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 023133 100 PESIIVVNRIIFAFAK-----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI 174 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 174 (287)
+.|..+|-..+..+.. .+.++-....++.|.+.|+..|..+|+.|+..+-+- .+.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg----------------kfiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG----------------KFIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc----------------ccccH-H
Confidence 5677788888877764 356777788889999999999999999988765432 22232 2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI-EESLRLFNDMK 235 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 235 (287)
.+-.+.-.|-+.. +-++.++++|...|+.||..+-..|++++.+.+-. .+..+++-.|.
T Consensus 127 vfQ~~F~HYP~QQ--~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 127 VFQKVFLHYPQQQ--NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHhhCchhh--hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2333333333322 45788999999999999999999999999887753 33344444443
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.87 E-value=0.0026 Score=33.79 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
++..+...|.+.|++++|.++|+++.+..|+++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 4566777777777777777777777777776653
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.85 E-value=0.076 Score=36.24 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHhhcCCCCC
Q 023133 259 VDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~ 277 (287)
...|+.-|+++.+..|+..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5588888888888888753
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.049 Score=43.53 Aligned_cols=139 Identities=9% Similarity=0.012 Sum_probs=92.9
Q ss_pred HHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 023133 41 VASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120 (287)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 120 (287)
..+.+.|++..|...|++.... + -+.+.-+.++..... ..-..+++.+..+|.+.+++.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~-l------------~~~~~~~~ee~~~~~--------~~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF-L------------EYRRSFDEEEQKKAE--------ALKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH-h------------hccccCCHHHHHHHH--------HHHHHHhhHHHHHHHhhhhHH
Confidence 4567788888888877776532 0 011111112111111 123456778888999999999
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc-hHHHHHHHHHH
Q 023133 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR-LDLCLIYFREM 199 (287)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~ 199 (287)
.|++.-...+..+ ++++-..-.-..++...|+++.|...|+.+.+.... |...-+.++..-.+... .+...++|..|
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998876 567778778889999999999999999999986432 44444445544444443 34457888888
Q ss_pred hhC
Q 023133 200 GES 202 (287)
Q Consensus 200 ~~~ 202 (287)
...
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 753
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.77 E-value=0.08 Score=35.41 Aligned_cols=137 Identities=16% Similarity=0.193 Sum_probs=76.5
Q ss_pred hccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhH---HHHHHHHHhcCCHH
Q 023133 79 IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITY---NIVLDILGRVGRVN 155 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 155 (287)
.-.|..++..+++.+..... +..-+|-+|--....-+-+-..++++.+-+ ..|.... ..++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc--
Confidence 34577777777777776643 333344444333333444555555555543 3444332 233444433332
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+.......+......|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.+.-
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 33445566777778888888888888877543 6777778888888888888888888888888
Q ss_pred hCCCC
Q 023133 236 QQQIR 240 (287)
Q Consensus 236 ~~~~~ 240 (287)
+.|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 87753
No 238
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.74 E-value=0.2 Score=43.27 Aligned_cols=87 Identities=14% Similarity=0.256 Sum_probs=45.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHH----
Q 023133 137 DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT---- 212 (287)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---- 212 (287)
+....-.+..++.+.|.-++|.+.+-+... | ...+..|...++|.+|.++-++.. -|.+.|.-
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~a 917 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQA 917 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHH
Confidence 444455566666666666666655533211 1 234555666667767666655443 12222211
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 213 ----------ALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 213 ----------~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
--|..+.+.|++-.|.+++.+|.+
T Consensus 918 aqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 918 AQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 123445566666666666666653
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.73 E-value=0.29 Score=41.30 Aligned_cols=164 Identities=14% Similarity=0.026 Sum_probs=95.3
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhc----cCChHHHHHHHHHHHhcCCCCcHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS------DCYTNFARAFIM----TDDCTQLLIFIEEVVQIASPESII 104 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 104 (287)
....++...+=.||-+.+++.+.+..+.+---.+ -.|+..+..++. ..+.+.+.++++.+.+.- |.+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~l 268 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSAL 268 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHH
Confidence 4555666666678888888888776553211111 123333333332 456677888888887763 33333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLK-CKP--DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 181 (287)
..-.-.+.+...|++++|++.|++..... --+ ....+--+.-++.-..+|++|.+.|..+.+.+-. +...|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 33334566677888888888888654311 011 2223344555667788888888888888775432 4444444433
Q ss_pred H-HHhcCch-------HHHHHHHHHHh
Q 023133 182 N-LRKIRRL-------DLCLIYFREMG 200 (287)
Q Consensus 182 ~-~~~~~~~-------~~a~~~~~~~~ 200 (287)
+ +...++. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3 3345556 77777777664
No 240
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.72 E-value=0.19 Score=39.16 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=28.6
Q ss_pred HhcCChhHHHHHHHHHhhcC-CCCchhHHH-------HHHHHhhcC-ChhHHHHHHHHHH
Q 023133 10 CKAGNVSAAVRLLQSLRDKN-IFLPNAYNC-------VLVASAETN-DIDLSFQILKDLL 60 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~ 60 (287)
.+.|+.+.|...+.+..... ..++..... +.....+.+ +++.|...+++..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~ 63 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAY 63 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 46788888888888876654 333322222 222233444 6666666655543
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.67 E-value=0.17 Score=37.64 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=146.4
Q ss_pred cCChhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHH
Q 023133 46 TNDIDLSFQILKDLLVSSRTL-SSDCYTNFARAFIMTDDCTQLLIFIEEVVQI-ASPESIIVVNRIIFAFAKSRQIEKAL 123 (287)
Q Consensus 46 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 123 (287)
.+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 344555555555555432221 2456666677777788888888887777652 23455666777777777788888888
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCchHHHHHHHHHHh
Q 023133 124 LIFDHIKGLKCKPDLITYNIVLD-ILGRVGRVNDMLNEFASMKEAGV--VPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 200 (287)
..+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888877653222 122222333 67788888888888888755221 1123334444444667788888888888887
Q ss_pred hCCCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 201 ESGIKP-DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 201 ~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
... .. ....+..+...+...++++.+...+...... .|+ ...+..+...+...|..+++...+.+.....|.
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 653 22 3567777788888888888888888888764 233 344444555555667788888888888777664
No 242
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.65 E-value=0.11 Score=35.64 Aligned_cols=85 Identities=11% Similarity=0.074 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 023133 37 NCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116 (287)
Q Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (287)
..++..+.+.+.+.....+++.+...+ ..+...++.++..+++.+ .......++. . .+..-...++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 344444444455555555555555444 234445555555555432 2222233321 0 1112223345555555
Q ss_pred CCHHHHHHHHHHH
Q 023133 117 RQIEKALLIFDHI 129 (287)
Q Consensus 117 ~~~~~a~~~~~~~ 129 (287)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555565555554
No 243
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.39 Score=41.23 Aligned_cols=199 Identities=12% Similarity=0.138 Sum_probs=112.1
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC----CCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 023133 20 RLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRT----LSSDCYTNFARAFIMTDDCTQLLIFIEEVV 95 (287)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 95 (287)
.-+++++++|..|... .+...++-.|++.+|-++|.+--..+-. .|..+|. ...-+...|..++-..+.++-.
T Consensus 621 ~EL~~~k~rge~P~~i--LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~RKRA 697 (1081)
T KOG1538|consen 621 SELEERKKRGETPNDL--LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLIRKRA 697 (1081)
T ss_pred HHHHHHHhcCCCchHH--HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHHHHHH
Confidence 3355677777766533 2344555567777777777553211100 0111111 2233444454444433333211
Q ss_pred h--cCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHH------HHhcCCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 96 Q--IAS-PESIIVVNRIIFAFAKSRQIEKALLIFD------HIKGLKC---KPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 96 ~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
+ ..+ +|. +...++...|+.++|..+.- -+.+.+. ..+..+...+..-+.+...+.-|-++|..
T Consensus 698 ~WAr~~kePk-----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 698 DWARNIKEPK-----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred HHhhhcCCcH-----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 1 111 222 33445566677777766531 1222111 23444555555555567778888888888
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHH-----------HHHHHHHHHhcCCHHHHHHHHH
Q 023133 164 MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT-----------YTALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~ 232 (287)
|-+. ..+++.....++|++|..+-+...+. .||+.. |.-.-.+|-+.|+-.+|.++++
T Consensus 773 ~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLe 841 (1081)
T KOG1538|consen 773 MGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLE 841 (1081)
T ss_pred hccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHH
Confidence 7543 35777888899999999998887764 455431 2233457889999999999999
Q ss_pred HHHhC
Q 023133 233 DMKQQ 237 (287)
Q Consensus 233 ~~~~~ 237 (287)
++...
T Consensus 842 QLtnn 846 (1081)
T KOG1538|consen 842 QLTNN 846 (1081)
T ss_pred Hhhhh
Confidence 88654
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.59 E-value=0.25 Score=38.77 Aligned_cols=22 Identities=14% Similarity=0.430 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhCCCcCCHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYT 212 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~ 212 (287)
.+.++++.+.+.|+++....|.
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp 221 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYP 221 (297)
T ss_pred HHHHHHHHHHHcCCcccccccc
Confidence 4455555555555555544443
No 245
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.53 E-value=0.35 Score=39.65 Aligned_cols=263 Identities=13% Similarity=0.121 Sum_probs=155.1
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCch------hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH--Hhc
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLPN------AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARA--FIM 80 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 80 (287)
+-+.+++++|.++|.++-+.....+. .-+.++++|... +.+.....+..+.+. .| ...|..+..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45688999999999998766544431 234566666543 355555555555443 23 2234334433 457
Q ss_pred cCChHHHHHHHHHHHhc--CCC------------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC----CCCCHhhHH
Q 023133 81 TDDCTQLLIFIEEVVQI--ASP------------ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK----CKPDLITYN 142 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~ 142 (287)
.+.+..|.+.+...... +.. +|-..-+..++.+...|++.++..+++++...= ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899988887665543 211 223334567788899999999999998876532 235778888
Q ss_pred HHHHHHHhcC---------------CHHHHHHHHHHHHHc------CCCCChhHHHHHHHHHHhc--CchHHHHHHHHHH
Q 023133 143 IVLDILGRVG---------------RVNDMLNEFASMKEA------GVVPDFISYNTLLNNLRKI--RRLDLCLIYFREM 199 (287)
Q Consensus 143 ~l~~~~~~~~---------------~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~ 199 (287)
.++-.+++.- .++.+.-+..++... .+.|.......++....-. ....--.+++...
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 7555544321 133333334444322 2344444445554443322 1222333444444
Q ss_pred hhCCCcCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc----chHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 200 GESGIKPDLL-TYTALIDSFGRTGNIEESLRLFNDMKQQQIRP----SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 200 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
...-+.|+-. ....|...+.+ +.+++..+.+.+....+.+ -+.++..++....+.++...|.+.+.-+.-..|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 4444566643 33445555554 5666666666655432221 346788888999999999999999998887777
Q ss_pred CCC
Q 023133 275 DLA 277 (287)
Q Consensus 275 ~~~ 277 (287)
...
T Consensus 330 ~~s 332 (549)
T PF07079_consen 330 RIS 332 (549)
T ss_pred cch
Confidence 654
No 246
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.49 E-value=0.13 Score=34.41 Aligned_cols=137 Identities=12% Similarity=0.179 Sum_probs=62.8
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH---HHHHHHHhccCChH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCY---TNFARAFIMTDDCT 85 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~ 85 (287)
+.-.|.+++-.++..+........ -+|.+|--....-+-+-..++++.. |--.|...+ ..++.++...+
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~--E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n--- 83 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIK--EYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRN--- 83 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HH--HHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHHhchHHHHHHHHHHHcCcCCcc--ccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhc---
Confidence 445788999999998877655333 4555554444443334444444333 333333222 11222222222
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
.+.......++.....|.-+.-.+++..+.+.+ .++....-.+..+|.+.|+..++.+++.+.-
T Consensus 84 ---------------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 84 ---------------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---------------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 122333444555555566666666665554322 4555555555666666666666666666655
Q ss_pred HcCC
Q 023133 166 EAGV 169 (287)
Q Consensus 166 ~~~~ 169 (287)
+.|+
T Consensus 148 ekG~ 151 (161)
T PF09205_consen 148 EKGL 151 (161)
T ss_dssp HTT-
T ss_pred Hhch
Confidence 5554
No 247
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.49 E-value=0.054 Score=38.95 Aligned_cols=107 Identities=13% Similarity=0.080 Sum_probs=74.2
Q ss_pred HHHHhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHhc
Q 023133 22 LQSLRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS--SDCYTNFARAFIMTDDCTQLLIFIEEVVQI 97 (287)
Q Consensus 22 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 97 (287)
++...+...... ..+..+...|.+.|+.+.|++.|.++.+....+. ...+-.+++.....+++..+...+.++...
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333333433333 6899999999999999999999999987755544 346677888899999999999988776543
Q ss_pred CCC---Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 98 ASP---ES----IIVVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 98 ~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
--. .+ ..+|..+. +...+++.+|-+.|-...
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HhccchHHHHHHHHHHHHHH--HHHhchHHHHHHHHHccC
Confidence 212 11 12333332 445789999988886654
No 248
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.47 E-value=0.44 Score=43.72 Aligned_cols=78 Identities=6% Similarity=0.036 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 023133 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228 (287)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 228 (287)
.....+++|.-.|+..-+. ..-+.+|...|+|.+|..+..++.... .--..+-..|+.-+...+++-+|-
T Consensus 950 ~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccchhHH
Confidence 3445555555555443221 223555666666666666666554221 001112244566666666666666
Q ss_pred HHHHHHHh
Q 023133 229 RLFNDMKQ 236 (287)
Q Consensus 229 ~~~~~~~~ 236 (287)
++..+...
T Consensus 1020 ~il~e~~s 1027 (1265)
T KOG1920|consen 1020 KILLEYLS 1027 (1265)
T ss_pred HHHHHHhc
Confidence 66665543
No 249
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.47 E-value=0.0054 Score=32.57 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=15.0
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHh
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVS 62 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 62 (287)
++..+...|.+.|++++|.++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.24 Score=37.05 Aligned_cols=117 Identities=12% Similarity=0.164 Sum_probs=59.4
Q ss_pred hcCCHHHHHHHHHHHhc---CCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCh-hHHHHHHHHHH
Q 023133 115 KSRQIEKALLIFDHIKG---LKC--KPDLITYNIVLDILGRVGRVNDMLNEFASMK----EAGVVPDF-ISYNTLLNNLR 184 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~-~~~~~l~~~~~ 184 (287)
..-++++|+++|++... .+- .--...+...-..+.+...+++|-..|.+-. +..--++. ..|...|-.+.
T Consensus 122 env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L 201 (308)
T KOG1585|consen 122 ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYL 201 (308)
T ss_pred hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHh
Confidence 34455556655554321 110 0112234444555666666666655544421 11111222 34555555666
Q ss_pred hcCchHHHHHHHHHHhhCC---CcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 185 KIRRLDLCLIYFREMGESG---IKPDLLTYTALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 232 (287)
...++..|..+++.-.+.+ -+-+..+...|+.+|- .||.+++.+++.
T Consensus 202 ~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred hHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHHc
Confidence 6677777777777744322 2334556666776664 467766665543
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.3 Score=37.67 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=99.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR 188 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (287)
-.......|++.+|...|+...... +-+...--.+..+|...|+.+.|..++..+...--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3445678899999999998887653 223455667888999999999999999988654322222333334555556666
Q ss_pred hHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcchHhHHHHHHHHHhcCChH
Q 023133 189 LDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ-IRPSIYVYRSLIDNLKKMGKVD 260 (287)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 260 (287)
..+...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+++ -.-|...-..++..+.--|.-+
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 66666666665543 3366677788888999999999988777766542 1234455566666665555333
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.41 E-value=0.039 Score=42.39 Aligned_cols=77 Identities=9% Similarity=0.062 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh-----cCCCCcHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQ-----IASPESIIVVNRI 109 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 109 (287)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..++++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 55666666666666666666666666542 44566666666666666666666666665543 4566666665555
Q ss_pred HHH
Q 023133 110 IFA 112 (287)
Q Consensus 110 ~~~ 112 (287)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.37 E-value=0.16 Score=34.00 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh---hHHHHHHHHHhcCC
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI---TYNIVLDILGRVGR 153 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 153 (287)
+++..|+.+.|++.|.+.+..- |.....||.-..++.-.|+.++|+.=+++..+..-..+.. .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3445555555555555555443 3444555555555555555555555555544432111221 22222334445555
Q ss_pred HHHHHHHHHHHHHc
Q 023133 154 VNDMLNEFASMKEA 167 (287)
Q Consensus 154 ~~~a~~~~~~~~~~ 167 (287)
-+.|..-|+...+.
T Consensus 131 dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 131 DDAARADFEAAAQL 144 (175)
T ss_pred hHHHHHhHHHHHHh
Confidence 55555555444333
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.35 E-value=0.48 Score=39.37 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=32.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCC-CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESG-IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+..++-+.|+.++|.+.+++|.+.. ...+......|+.++...+.+.++..++.+..+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 4444555666666776666665431 111223445566666666666666666666543
No 255
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.27 E-value=0.43 Score=37.98 Aligned_cols=226 Identities=13% Similarity=0.143 Sum_probs=133.2
Q ss_pred HhcCChhHHHHHHHHHhhcCC--CCc-hhHHHHHHHHhhcCChhHHHHHHHHHH----Hhc-CCCCHHHHHHHHHHHhcc
Q 023133 10 CKAGNVSAAVRLLQSLRDKNI--FLP-NAYNCVLVASAETNDIDLSFQILKDLL----VSS-RTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~-~~~~~~~~~~l~~~~~~~ 81 (287)
....+.++|+..+.....+-. ... .++..+..+.++.|.+++++..--.-+ +.. ...--..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888877655421 112 567778888888888887765422111 110 011123445555666666
Q ss_pred CChHHHHHHHHHHHhc-CCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CC--CHhhHHHHHHHHHhcC
Q 023133 82 DDCTQLLIFIEEVVQI-ASPE---SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC---KP--DLITYNIVLDILGRVG 152 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~ 152 (287)
-++.+++.+-+.-... |..+ .-...-++..++...+.++++++.|+...+... .| ....+-.|.+.|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6666666665544322 1111 113344566777778889999999887654211 12 2347888889999999
Q ss_pred CHHHHHHHHHHHHH----cCCCCChhHHH-----HHHHHHHhcCchHHHHHHHHHHh----hCCCcCC-HHHHHHHHHHH
Q 023133 153 RVNDMLNEFASMKE----AGVVPDFISYN-----TLLNNLRKIRRLDLCLIYFREMG----ESGIKPD-LLTYTALIDSF 218 (287)
Q Consensus 153 ~~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~l~~~~ 218 (287)
++++|.-+..+..+ .++..-..-|. .+.-++...|....|.+.-++.. +.|-++. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99988877666533 23221111222 23345666777777777776654 3442322 23455677888
Q ss_pred HhcCCHHHHHHHHHHHH
Q 023133 219 GRTGNIEESLRLFNDMK 235 (287)
Q Consensus 219 ~~~g~~~~a~~~~~~~~ 235 (287)
...|+.+.|+.-|+...
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 89999998887777654
No 256
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.27 E-value=0.39 Score=37.48 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=127.8
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHhccC-ChHHHHHHHHHHHhc----C----CCCc-----
Q 023133 44 AETNDIDLSFQILKDLLVSSRTLSSDCYTN-------FARAFIMTD-DCTQLLIFIEEVVQI----A----SPES----- 102 (287)
Q Consensus 44 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 102 (287)
.+.|+++.|..++.+........++..... +.......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 478999999999988865431222222222 233334456 899998888876544 1 1222
Q ss_pred HHHHHHHHHHHHhcCCHH---HHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIE---KALLIFDHIKGLKCKPD-LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (287)
..++..++.+|...+..+ +|..+++.+.... |+ ...+-.-+..+.+.++.+++.+++..|...- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 356777888888877755 4566666665442 33 4455556677777899999999999998762 213344554
Q ss_pred HHHHH---HhcCchHHHHHHHHHHhhCCCcCCHH-HHHH-HHH---HHHhcCC------HHHHHHHHHHHHhC-CCCcch
Q 023133 179 LLNNL---RKIRRLDLCLIYFREMGESGIKPDLL-TYTA-LID---SFGRTGN------IEESLRLFNDMKQQ-QIRPSI 243 (287)
Q Consensus 179 l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~-l~~---~~~~~g~------~~~a~~~~~~~~~~-~~~~~~ 243 (287)
++..+ .. .....+...+..+....+.|... .... ++. ...+.++ .+....+++...+. +.+.+.
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 44444 33 33456667776666544455443 1111 111 1122222 44455555543322 223333
Q ss_pred HhHH---HH----HHHHHhcCChHHHHHHHHHHh
Q 023133 244 YVYR---SL----IDNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 244 ~~~~---~l----i~~~~~~g~~~~a~~~~~~~~ 270 (287)
.+-. ++ ...+.+.+++++|.++|+-..
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 3322 22 234668899999999998654
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=96.27 E-value=0.39 Score=39.60 Aligned_cols=81 Identities=14% Similarity=-0.002 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+|.++.++..+.+ +-|......+..+....++++.|...|++.... .|| ..+|......+.-+|+.++|.+.+++.
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444433 334444444444444444444455555444432 222 223333333334444555555555444
Q ss_pred hhcCC
Q 023133 270 NSSLS 274 (287)
Q Consensus 270 ~~~~~ 274 (287)
.+..|
T Consensus 399 lrLsP 403 (458)
T PRK11906 399 LQLEP 403 (458)
T ss_pred hccCc
Confidence 44444
No 258
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.25 E-value=0.076 Score=42.73 Aligned_cols=236 Identities=9% Similarity=0.020 Sum_probs=140.3
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHH--Hhhc--CCCCc--hhHHHHHHHHhhcCChhHHHHHHHHH----HHhcCC-CCHH
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQS--LRDK--NIFLP--NAYNCVLVASAETNDIDLSFQILKDL----LVSSRT-LSSD 69 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~--~~~~--~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~ 69 (287)
+|+.|..+|.-.+++++|++.... ...+ |-... .+-..|...+-..|.+++|+-...+- .+.|-. ....
T Consensus 57 IYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 57 IYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred HHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 588888999999999999986432 1111 11111 23344555555667777776443322 122211 1233
Q ss_pred HHHHHHHHHhccCC--------------------hHHHHHHHHHHHh----cCCC-CcHHHHHHHHHHHHhcCCHHHHHH
Q 023133 70 CYTNFARAFIMTDD--------------------CTQLLIFIEEVVQ----IASP-ESIIVVNRIIFAFAKSRQIEKALL 124 (287)
Q Consensus 70 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 124 (287)
.+..+...|...|+ ++.|.++|.+-++ .|-. .--..|..|...|.-.|+++.|+.
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~ 216 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH 216 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH
Confidence 44445555544332 2334444443222 1100 112456677777778899999987
Q ss_pred HHHHH----hcCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC-CCChhHHHHHHHHHHhcCchHHHHH
Q 023133 125 IFDHI----KGLKCK-PDLITYNIVLDILGRVGRVNDMLNEFASMK----EAGV-VPDFISYNTLLNNLRKIRRLDLCLI 194 (287)
Q Consensus 125 ~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 194 (287)
..+.- .+.|-. .....+..+..++.-.|+++.|.+.|+.-. +.|- .....+..+|...|.-..++++|+.
T Consensus 217 ~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 217 FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 76543 233321 123467788888889999999999887743 3222 1233455667778888888899998
Q ss_pred HHHHHhh----CC-CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 195 YFREMGE----SG-IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 195 ~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
++.+-.. .+ ..-....+..|..+|...|..++|+.+.+...+
T Consensus 297 Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8876432 11 122446788899999999999999888776653
No 259
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.24 E-value=0.24 Score=35.61 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HhhHH--H
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPE--SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD-LITYN--I 143 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~--~ 143 (287)
..+..+..-|.+.|+.+.|.+.+.++.+....+ -...+-.+|....-.+++..+...+.+....--.++ ...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456778889999999999999999988765333 345677888999999999999988877654311111 11111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHH
Q 023133 144 VLD--ILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 144 l~~--~~~~~~~~~~a~~~~~~~~~ 166 (287)
... .+...+++.+|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 111 23457889999888877643
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=96.16 E-value=0.6 Score=38.57 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL-ITYNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
..+|.+.-++..+.+ +.|......+..+..-.++.+.|...|++....+ |+. .+|....-.+.-.|+.++|.+.++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555555655 4556665556555556666666666666666552 332 244444444455666666666666
Q ss_pred HHHH
Q 023133 163 SMKE 166 (287)
Q Consensus 163 ~~~~ 166 (287)
+...
T Consensus 397 ~alr 400 (458)
T PRK11906 397 KSLQ 400 (458)
T ss_pred HHhc
Confidence 6444
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.16 E-value=0.22 Score=33.40 Aligned_cols=91 Identities=18% Similarity=0.185 Sum_probs=48.3
Q ss_pred HHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHH---HHHHHHhcCC
Q 023133 42 ASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNR---IIFAFAKSRQ 118 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~ 118 (287)
+.+..|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|+.-+++..+..-+.+...+.+ -...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445556666666666665543 233455666666666666666666666665555432233222222 2233555566
Q ss_pred HHHHHHHHHHHhcCC
Q 023133 119 IEKALLIFDHIKGLK 133 (287)
Q Consensus 119 ~~~a~~~~~~~~~~~ 133 (287)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666555544
No 262
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.13 E-value=0.12 Score=39.78 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh-----CCCcCCHHHHHHH
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE-----SGIKPDLLTYTAL 214 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 214 (287)
++..++..+...|+.+.+.+.++++...... +...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445555555555555555555555554332 455555556666666655555555555432 4555555555444
Q ss_pred HHH
Q 023133 215 IDS 217 (287)
Q Consensus 215 ~~~ 217 (287)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 263
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.11 E-value=0.37 Score=35.71 Aligned_cols=222 Identities=14% Similarity=0.123 Sum_probs=156.9
Q ss_pred CChhHHHHHHHHHhhcCCCC--chhHHHHHHHHhhcCChhHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhccCChHHHHH
Q 023133 13 GNVSAAVRLLQSLRDKNIFL--PNAYNCVLVASAETNDIDLSFQILKDLLVS-SRTLSSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 13 g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
+....+...+.......... ...+......+...+.+..+...+...... ........+..........+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 45555666666665555442 257777888888999999999888887753 234455666667777788888999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 90 FIEEVVQIASPESIIVVNRIIF-AFAKSRQIEKALLIFDHIKGLKC--KPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 999988765333 222233333 78899999999999999865321 01233444444556788999999999999887
Q ss_pred cCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 167 AGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.........+..+...+...++.+.+...+...... .|+ ...+..+...+...+..+++...+....+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 633213567788888888899999999999998876 333 444555555555777899999999988875
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.45 Score=36.71 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=77.3
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHH
Q 023133 76 RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN 155 (287)
Q Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (287)
......+++.+|...|+...... +.+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556677777777777776654 33345555667777777777777777777654311111112222233444444443
Q ss_pred HHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC-CcCCHHHHHHHHHHHHhcCC
Q 023133 156 DMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESG-IKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 223 (287)
+...+-..+-.. | |...-..+...+...|+.+.|.+.+-.+...+ -.-|...-..|+..+.--|.
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 333333333332 3 45555556666777777777776665554321 12244455566666665553
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.31 Score=38.35 Aligned_cols=150 Identities=8% Similarity=-0.097 Sum_probs=88.9
Q ss_pred cCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH--HHH--HHHHHHHhccCChHHH
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS--DCY--TNFARAFIMTDDCTQL 87 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~--~~l~~~~~~~~~~~~a 87 (287)
.|++.+|-..++++.+.-+..--++...=.+|.-.|+.......+++.+.. -.|+. ..| ..+.-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 456666666677776655433245555556777777777777777766543 12222 122 2333445567788888
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP---DLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
++.-++..+.+ +.|.....++...+--.|+..++.++..+-...--.. -.+.|=...-.+...++++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88877777776 5677777777777777788887777765543221000 111222223334555778888888765
No 266
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.09 E-value=0.51 Score=37.11 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHhcCCH
Q 023133 49 IDLSFQILKDLLVSSRTLSSDCYTNFARAFIM--TD----DCTQLLIFIEEVVQIAS---PESIIVVNRIIFAFAKSRQI 119 (287)
Q Consensus 49 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 119 (287)
+++.+.+++.|.+.|.+-+..+|-+....... .. ....+..+++.|.+..+ .++..++..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667888999999988887776553333222 22 34568889999988753 2444556666543 44443
Q ss_pred ----HHHHHHHHHHhcCCCCCCHh--hHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 023133 120 ----EKALLIFDHIKGLKCKPDLI--TYNIVLDILGRVGR--VNDMLNEFASMKEAGVVPDFISYNTLLNNL 183 (287)
Q Consensus 120 ----~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (287)
+.++.+|+.+.+.|+..+.. ....++........ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 56778888888888766433 34444444333322 458889999999999998888777655433
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.08 E-value=0.27 Score=33.79 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=18.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (287)
++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 3334444444444444444444443 2344444444444443
No 268
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.24 Score=38.53 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHh
Q 023133 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 200 (287)
++++++.++..=.+.|+-||..+++.++..+.+.++..+|.++...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555554555555555555555555555555555555444443
No 269
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=0.43 Score=35.83 Aligned_cols=207 Identities=11% Similarity=0.113 Sum_probs=116.2
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..|.....+|....++++|...+.+..+. ..-+...|+ ....+++|.-+.+++.+. +--...++.-..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 45666667777777787777766665421 121222121 112234444444444432 22344566666777
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC--CCChhHHHHHHHHHHhcCc
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA---GV--VPDFISYNTLLNNLRKIRR 188 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 188 (287)
..+|.++.|-..+++.-+. ..+-++++|+.+|++.... +- .--...+...-..+++...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777766666554321 2344555666666554221 10 0112344555666777777
Q ss_pred hHHHHHHHHHHh----hCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcchHhHHHHHHHHHhcCChH
Q 023133 189 LDLCLIYFREMG----ESGIKPDL-LTYTALIDSFGRTGNIEESLRLFNDMKQQ---QIRPSIYVYRSLIDNLKKMGKVD 260 (287)
Q Consensus 189 ~~~a~~~~~~~~----~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 260 (287)
+++|-..+.+-. +..--++. ..|-..|-.+.-..|+..|.+.++.-.+. .-.-+..+...|+.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 777766655432 11112222 23555566667778999999999985443 2234567888888887 668888
Q ss_pred HHHHHHH
Q 023133 261 LAMTIFE 267 (287)
Q Consensus 261 ~a~~~~~ 267 (287)
++.+++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 8877653
No 270
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.95 E-value=0.028 Score=27.59 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.+..+...+...|++++|.+.|++..+..|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4556666777777777777777777777665
No 271
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=0.69 Score=40.90 Aligned_cols=207 Identities=16% Similarity=0.171 Sum_probs=113.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH----HHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 023133 36 YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFAR----AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIF 111 (287)
Q Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 111 (287)
...-+....+...++.|+.+.+.- ..+..+...+.. -+.+.|++++|...+-+.+..- .|. .++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHH
Confidence 444555566666666666554432 223333333333 3446677777777665554321 222 2445
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHH
Q 023133 112 AFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191 (287)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (287)
-|....++..--.+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 55666667777777777777774 455555677788888888777666655544 2221 1123455666666677777
Q ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
|..+-..... +...... .+-..+++++|++.+..+.-...-+....|.. .+.. ..+++...++-+.
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l~~l~kyGk---~Ll~-h~P~~t~~ili~~ 547 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELLRTLNKYGK---ILLE-HDPEETMKILIEL 547 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHH---HHHh-hChHHHHHHHHHH
Confidence 7666554432 2222222 34456888899888887652212222222322 2222 3455555555554
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.89 E-value=0.85 Score=38.01 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhHHHHHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK-PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV-PDFISYNTLLN 181 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 181 (287)
.+-..+..++.+.|+.++|++.|.+|.+.... ........|+.++...+.+.++..++.+..+...+ .-..+|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33345666777788888888888888654211 12335667888888888888888888886543221 12344555443
No 273
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.88 E-value=0.36 Score=33.71 Aligned_cols=50 Identities=22% Similarity=0.179 Sum_probs=22.5
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLL 60 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 60 (287)
+.++.+++..+++.+.-..+..+..-..-...+.+.|+|.+|..+|+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34455555555555544443333222222233444555555555555543
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.78 E-value=1.2 Score=38.86 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcchHhHHHHHHHHHhcC
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQQ-QIRPSIYVYRSLIDNLKKMG 257 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g 257 (287)
|..|.+--...|..+.|++.--.+.+. .+-|....|+.+.-+-+...
T Consensus 1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~r 1071 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVR 1071 (1189)
T ss_pred HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhh
Confidence 444555556678888887754444422 35677778877765544433
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.76 E-value=0.036 Score=27.27 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 244 YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.+|..+..++...|++++|...|+++.+..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34566666777777777777777777666664
No 276
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.75 E-value=0.44 Score=33.69 Aligned_cols=132 Identities=15% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC
Q 023133 124 LIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG 203 (287)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 203 (287)
+.++.+.+.+++|+...+..++..+.+.|++.. +..+...++-+|.......+-.+. +....+.++--+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 344555556666777777777777777776543 344445555555555444443332 2233344444344332
Q ss_pred CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 204 IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+|+-.
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0013445666677777777777777664322 1122244555555566655444444444
No 277
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.69 E-value=0.88 Score=36.71 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=85.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-ChhHHHHHHHHHHhc
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA-GVVP-DFISYNTLLNNLRKI 186 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 186 (287)
-..++.+.|+..++-.+++.+-+....|+ .+ .+..+.+.|+. +..-++..... .++| +..+...+..+....
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda 342 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPD--IA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDA 342 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChH--HH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhc
Confidence 44678899999999999999988743444 33 22334455543 33333332211 1233 456677788888889
Q ss_pred CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCc
Q 023133 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR-TGNIEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~ 241 (287)
|++..|..--+..... .|....|..|.+.-.. .||-.++...+.+..+..-.|
T Consensus 343 ~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 343 GEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred cchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 9999888777766554 7888889888887654 599999999999998753333
No 278
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.66 E-value=0.87 Score=36.38 Aligned_cols=227 Identities=11% Similarity=0.106 Sum_probs=136.1
Q ss_pred hcCChhHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhccCChHHHHHHHH----HHHhcC-CCCcHHHHHHHHHHHHhcC
Q 023133 45 ETNDIDLSFQILKDLLVSS--RTLSSDCYTNFARAFIMTDDCTQLLIFIE----EVVQIA-SPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~~~ 117 (287)
...+.++++..+.+-+..- ..-.-.++..+..+.++.|.+++++..-- -..+.. -..-...|..+..++-+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665554321 11112345556677788888877665422 111111 0112345556666666666
Q ss_pred CHHHHHHHHHHHhcC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCChhHHHHHHHHHHhcCc
Q 023133 118 QIEKALLIFDHIKGL-KCKP---DLITYNIVLDILGRVGRVNDMLNEFASMKEAG-----VVPDFISYNTLLNNLRKIRR 188 (287)
Q Consensus 118 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 188 (287)
++.+++.+-+.-... |..| .-...-++..++...+.++++++.|+...+.- .......+..+...|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 667776665544332 2122 11233446677778888999999998875431 11234578888899999999
Q ss_pred hHHHHHHHHHHhh----CCCcCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHh----CCCCc-chHhHHHHHHHHH
Q 023133 189 LDLCLIYFREMGE----SGIKPDLLTYT-----ALIDSFGRTGNIEESLRLFNDMKQ----QQIRP-SIYVYRSLIDNLK 254 (287)
Q Consensus 189 ~~~a~~~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~~~ 254 (287)
.++|.-+..+..+ .++..-..-|. .|.-++...|.+-.|.+..++..+ .|-++ -......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 9998877766543 22221112232 344567788888888888777653 34332 2345667788899
Q ss_pred hcCChHHHHHHHHHHhh
Q 023133 255 KMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 255 ~~g~~~~a~~~~~~~~~ 271 (287)
..|+.+.|+.-|+++..
T Consensus 258 ~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQAMG 274 (518)
T ss_pred hcccHhHHHHHHHHHHH
Confidence 99999999988887743
No 279
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.66 E-value=1 Score=37.13 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH-HHHHHH
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLK-CKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY-NTLLNN 182 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 182 (287)
+|...+..-.+..-++.|..+|-+..+.| +.+++..+++++..++ .|++.-|..+|+--... -||...| ...+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 44445555555555555555555555555 3445555555555443 33444555555543322 1222222 223333
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPD--LLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+...++-+.|..+|+..+++ +..+ ...|..+++--..-|+...+..+=++|.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 44455555555555533322 1111 23455555555555555555544444443
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.51 E-value=1.5 Score=38.08 Aligned_cols=149 Identities=12% Similarity=0.118 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHhhcCCCCchhH--HHHHHH-HhhcCChhHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHhcc---
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAY--NCVLVA-SAETNDIDLSFQILKDLLV-------SSRTLSSDCYTNFARAFIMT--- 81 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~--~~l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~--- 81 (287)
...|.+.++...+.|....... .....+ +....+.+.|+..++.... .+ ......-+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777777766665443111 112222 4456677888888777765 33 222344455555553
Q ss_pred -C-ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH--hcCCHHH
Q 023133 82 -D-DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK-SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG--RVGRVND 156 (287)
Q Consensus 82 -~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ 156 (287)
. +...|..++.+.-+.|. |+....-..+..... ..+...|.++|....+.|. ++..-+..++-... -..+...
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHH
Confidence 2 56667888877777773 444433322222222 2356778888887777663 22222222211111 2335677
Q ss_pred HHHHHHHHHHcC
Q 023133 157 MLNEFASMKEAG 168 (287)
Q Consensus 157 a~~~~~~~~~~~ 168 (287)
|..++.+..+.|
T Consensus 383 A~~~~k~aA~~g 394 (552)
T KOG1550|consen 383 AFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHcc
Confidence 777777777766
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.38 E-value=0.034 Score=27.91 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 023133 246 YRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+..|...|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555566666666666666653
No 282
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.28 E-value=0.038 Score=27.36 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=19.5
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 023133 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123 (287)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 123 (287)
++.++.. |.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4444444 556667777777777777776664
No 283
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.23 E-value=0.71 Score=32.70 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=12.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 59 LLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 59 ~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
+.+.+++|+...+..++..+.+.|++.
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333444444444444444444444433
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.07 E-value=0.97 Score=33.39 Aligned_cols=161 Identities=9% Similarity=0.025 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCHhhHHHHHH
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC-KPDLITYNIVLD 146 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 146 (287)
+..||-+.--+...|+++.|.+.|+...+.++..+-...|.-|.. .-.|++.-|.+=|...-+... .|-...|--+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 455666666666777777777777777776644444444433332 335677777666555543320 11112222222
Q ss_pred HHHhcCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCC------cCCHHHHHHHHHHHH
Q 023133 147 ILGRVGRVNDMLNEFAS-MKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI------KPDLLTYTALIDSFG 219 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~ 219 (287)
-+.-++.+|..-+.+ .... |..-|...|-.+. .|+.. ...+++++....- ..=..||--|...+.
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 233355555543333 2221 3333433332222 12221 1223333322110 011356777888888
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 023133 220 RTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~~ 238 (287)
..|+.++|..+|+-.+..+
T Consensus 249 ~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 249 SLGDLDEATALFKLAVANN 267 (297)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 8888888888888777653
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.04 E-value=0.079 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 210 TYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 210 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 286
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.87 E-value=0.063 Score=26.01 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=20.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 248 SLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.+..++.+.|++++|.+.|+++.+..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556666777788888888777777775
No 287
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.79 E-value=2.5 Score=36.74 Aligned_cols=178 Identities=12% Similarity=0.103 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHH--HH-HHhcCCHHHHHHHHHHHhc-------CCCCCCHhhHHHHHHHHHhcC-
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRII--FA-FAKSRQIEKALLIFDHIKG-------LKCKPDLITYNIVLDILGRVG- 152 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 152 (287)
...+.++++...+.|. ......-.++ .+ +....+.+.|+..|+...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4678888888877763 2222222222 22 3456788999999888765 33 2334555666666543
Q ss_pred ----CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH--hcCCHH
Q 023133 153 ----RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK-IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFG--RTGNIE 225 (287)
Q Consensus 153 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~ 225 (287)
+.+.|..++....+.|.. +...+-..+..... ..+...|.++|....+.|. +....+..++.... -..+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence 567789999888887643 54433333332222 2456789999999888873 22222222222111 335788
Q ss_pred HHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 226 ESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 226 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYL 423 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHH
Confidence 8889998888877 3332222223333333 5555555444444
No 288
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=2.8 Score=36.85 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=70.6
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHH
Q 023133 171 PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250 (287)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (287)
...-+.+--+.-+...|+..+|.++-.+.. -||-..|..=+.+++..+++++-+++-+... ++.-|.-.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHH
Confidence 334455555666777899999999888776 6888889888999999999998777665543 245566689
Q ss_pred HHHHhcCChHHHHHHHHHHh
Q 023133 251 DNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~ 270 (287)
.+|.+.|+.++|.+++-+..
T Consensus 752 e~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred HHHHhcccHHHHhhhhhccC
Confidence 99999999999999998773
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.55 E-value=1 Score=31.09 Aligned_cols=52 Identities=21% Similarity=0.128 Sum_probs=30.7
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS 62 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 62 (287)
..++++++..+++.|.-..+..+..-..-...+...|+|++|.++|++..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566677777777666555544433333333455667777777777776654
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.54 E-value=0.07 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=13.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+++.+...|...|++++|..+++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455555555555555555555555
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.43 E-value=0.098 Score=25.59 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
+|..+...+...|++++|.+.|++..+..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 345555566666666666666666655544
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=1.3 Score=31.53 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=10.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 023133 213 ALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 213 ~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.|.-+-.+.|++..|.+.|..+.
T Consensus 172 ALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 172 ALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHhHHHHhccchHHHHHHHHHHH
Confidence 33333444445555554444444
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=1.7 Score=34.12 Aligned_cols=103 Identities=16% Similarity=0.216 Sum_probs=76.2
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHH
Q 023133 133 KCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG---VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209 (287)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 209 (287)
|.+....+...++..-....+++.+..++-+++... ..|+...+ .+++.+ -.-++++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 445566666777777777888999998888776531 22222222 233333 3456778998888888999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 210 TYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 210 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
+++.+++.+.+.+++.+|..+.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888754
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.19 E-value=2 Score=33.00 Aligned_cols=250 Identities=13% Similarity=0.167 Sum_probs=145.7
Q ss_pred hcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHH---hcC--CCCHHHHHHHHHHHhcc
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLLV---SSR--TLSSDCYTNFARAFIMT 81 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 81 (287)
+..++++|+.-|.+..+...... .+...++....+.+++++.+..|.+++. +.+ ..+..+.+.++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34578999999999876543332 4667788999999999999999998853 222 23455677788777777
Q ss_pred CChHHHHHHHHHHHhcC-CCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC----CCC-------HhhHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIA-SPESII----VVNRIIFAFAKSRQIEKALLIFDHIKGLKC----KPD-------LITYNIVL 145 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~-------~~~~~~l~ 145 (287)
.+.+....+++.-++.- -..+.. +-..|...|...+++.+..++++++.+..- ..| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77776666665433210 001111 223567778888999999999888854311 111 24567777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHH-----HHhcCchHHHHH-HHHHHh---hCCCcCCHHH---HH
Q 023133 146 DILGRVGRVNDMLNEFASMKEA-GVVPDFISYNTLLNN-----LRKIRRLDLCLI-YFREMG---ESGIKPDLLT---YT 212 (287)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~-~~~~~~---~~~~~~~~~~---~~ 212 (287)
..|....+-.....++++.... .--|.+.... +|+- ..+.|.+++|.. +|+... +.| .|...+ |.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYL 276 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYL 276 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHH
Confidence 8888877777777777775432 2234444433 3333 345677777653 344333 445 444433 44
Q ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHH
Q 023133 213 ALIDSFGRTGNIEESLRLFN--DMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEE 268 (287)
Q Consensus 213 ~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (287)
.|...+.++|-- =|+ +.....-.|.+.....++.+|-. ++..+-.++++.
T Consensus 277 VLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 277 VLANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 555555554410 011 11111224556667777777743 444444444433
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.18 E-value=1.3 Score=31.00 Aligned_cols=18 Identities=11% Similarity=0.217 Sum_probs=8.1
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 023133 113 FAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~ 130 (287)
+...|+|.+|..+|+++.
T Consensus 54 ~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHhCCHHHHHHHHHHHh
Confidence 334444444444444443
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.78 E-value=3 Score=33.68 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=42.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 137 DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVP---DFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
...+|..+...+.+.|+++.|...+..+...+..+ +......-....-..|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44467777777888888888888887776643211 223344445556667777888887777766
No 297
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.77 E-value=5.2 Score=36.50 Aligned_cols=114 Identities=14% Similarity=0.200 Sum_probs=56.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcC----CCCchhHHHHHHHHhhcCCh--hHHHHHHHHHHHhcCCCCHHHHHH--
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKN----IFLPNAYNCVLVASAETNDI--DLSFQILKDLLVSSRTLSSDCYTN-- 73 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~-- 73 (287)
|..|+..|...|+.++|+++|.+..... ...+..+..++....+.+.. +..++.-....+....-....+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5667777777777777777777766533 11113444455555444443 444444333332211100001111
Q ss_pred ----------HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 023133 74 ----------FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115 (287)
Q Consensus 74 ----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (287)
-+-.+......+.+..+++.+....-.++....+.++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 112234445555566666666555444555555666655543
No 298
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.65 E-value=3.6 Score=34.13 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhhCCCcCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHH
Q 023133 189 LDLCLIYFREMGESGIKPDL----LTYTALIDS--FGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262 (287)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (287)
+..-..+-+-+.+.|++|-. ..-|.|.++ +...|++.++.-.-..+.+ +.|++.+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 33444444444556666543 334445443 4567888888766666665 689999999999999999999999
Q ss_pred HHHHHHH
Q 023133 263 MTIFEEM 269 (287)
Q Consensus 263 ~~~~~~~ 269 (287)
..++..+
T Consensus 515 ~~~l~~L 521 (549)
T PF07079_consen 515 WEYLQKL 521 (549)
T ss_pred HHHHHhC
Confidence 9999887
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.50 E-value=1.5 Score=31.99 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=51.0
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCcchHhHHHHHHHHHhcCCh
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ---QIRPSIYVYRSLIDNLKKMGKV 259 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~ 259 (287)
+.+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 457777777766664445555555555444 56777788877777643 3356777888888888888887
Q ss_pred HHHH
Q 023133 260 DLAM 263 (287)
Q Consensus 260 ~~a~ 263 (287)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.33 E-value=3.2 Score=35.67 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=44.4
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLN 159 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 159 (287)
+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|.+.... ..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHH
Confidence 345555554443332 23344555555555555555555555554322 234444444555444444
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHH
Q 023133 160 EFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFR 197 (287)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 197 (287)
+-....+.|.. |....+|...|+++++.+++.
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44444444322 222223334455555555543
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.29 E-value=0.11 Score=25.69 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=16.1
Q ss_pred HHhhcCCCCchhHHHHHHHHhhcCChhHHH
Q 023133 24 SLRDKNIFLPNAYNCVLVASAETNDIDLSF 53 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 53 (287)
+..+.++..+.+|+.+...+...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334444433356666666666666666553
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.03 E-value=0.29 Score=23.88 Aligned_cols=25 Identities=16% Similarity=0.111 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 106 VNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
|..+...|...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3334444444444444444444433
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.98 E-value=1.1 Score=28.57 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (287)
+..+-+..+....+.|++....+.+.+|.+.+++..|.++|+-.+.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 56666666667777888888888888888888888888888877743 2222336665554
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.93 E-value=1.4 Score=27.87 Aligned_cols=46 Identities=13% Similarity=-0.010 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 023133 50 DLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVV 95 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 95 (287)
-++.+-++.+....+.|++......+++|-+.+++..|.++++-..
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3444555555555566666666666666666666666666666554
No 305
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.81 E-value=0.41 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 208 LLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35778888889999999999998888764
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.80 E-value=1 Score=28.42 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (287)
+.-++.+-+..+....+.|++....+-+.+|.+.+|+..|.++|+-.+.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 34456666666666667777777777777777777777777777766633 1123345555543
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.70 E-value=2 Score=31.42 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh---CCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 023133 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE---SGIKPDLLTYTALIDSFGRTGNIEESL 228 (287)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~ 228 (287)
+.|.+.|-.+...+.--++.....+...| ...+.+++..++.+..+ .+-.+|+..+..|++.+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55677777776665544444444444433 46677777777777654 223567777888888888888777663
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.67 E-value=5.6 Score=33.65 Aligned_cols=181 Identities=11% Similarity=0.170 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHH
Q 023133 65 TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144 (287)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (287)
+.|......++..+.....+.-++.+..++...| .+...+..++.+|... ..+.-..+++++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4456667777888888888888888888888776 4556677788888777 66777788887777643 233333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-----CChhHHHHHHHHHHhcCchHHHHHHHHHHhh-CCCcCCHHHHHHHHHHH
Q 023133 145 LDILGRVGRVNDMLNEFASMKEAGVV-----PDFISYNTLLNNLRKIRRLDLCLIYFREMGE-SGIKPDLLTYTALIDSF 218 (287)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 218 (287)
..-| ..++.+.+..+|......=++ .-...|..+...- ..+.+....+...+.. .|...-...+.-+-.-|
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444 447778888888777654221 0123455554422 3556666666666653 34444455666666778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH
Q 023133 219 GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253 (287)
Q Consensus 219 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (287)
....++++|++++....+.+ ..|...-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88888888888888877763 34555555555544
No 309
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.62 E-value=3.9 Score=31.77 Aligned_cols=146 Identities=12% Similarity=0.113 Sum_probs=98.1
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHH-hcCCCCHHHHHHHHHHHhc-cC-ChHHHHHHHHHHHhc-CCCCcHHHHHHHHH
Q 023133 36 YNCVLVASAETNDIDLSFQILKDLLV-SSRTLSSDCYTNFARAFIM-TD-DCTQLLIFIEEVVQI-ASPESIIVVNRIIF 111 (287)
Q Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 111 (287)
|..++. ++....+|+.+|+.... ..+--|......+++.... .+ ....-.++.+-+... +-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 666654 34446777777774322 2355577777777777665 22 333333444444433 33677788888999
Q ss_pred HHHhcCCHHHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCChhHHHHHHHHHH
Q 023133 112 AFAKSRQIEKALLIFDHIKGL-KCKPDLITYNIVLDILGRVGRVNDMLNEFAS-----MKEAGVVPDFISYNTLLNNLR 184 (287)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 184 (287)
.++..++|.+-.++++..... +...|...|..+|......|+..-...+..+ ++..++..+...-..+-+.+.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 999999999999999887654 5566888999999999999998887777766 244456666555555544443
No 310
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=92.59 E-value=1.6 Score=32.35 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS--SRTLSSDCYTNFARA 77 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 77 (287)
+..++.+.+.+++++++.....-.+..+.....-..+++.++-.|++++|..-++-.-.. ...+....|..++++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445677778888888888777766666544466777777888888888887666555432 122334455555544
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.45 E-value=5.8 Score=33.28 Aligned_cols=122 Identities=11% Similarity=0.067 Sum_probs=79.7
Q ss_pred HhccCChHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHH
Q 023133 78 FIMTDDCTQLLIFIEEVVQIA-SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVND 156 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (287)
....|+.-.|-+-+...++.. -.|+.....+ ..+...|+++.+.+.+...... +.....+..++++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 344566665554444443332 2344443333 3466779999998888766542 13455677888888889999999
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC
Q 023133 157 MLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG 203 (287)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 203 (287)
|..+-.-|....+. +........-..-..|-++++...|+++....
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99988888776665 55544444444556778889999888887543
No 312
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=92.42 E-value=2.9 Score=32.28 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH-----
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG----- 149 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 149 (287)
|.+++..++|.++..+.-+-.+.--+....+...-|-.|.+.+++..+.++-..-.+.--.-+...|.++...|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455666666666655544433221111223333344446666666666655544433211122233444444333
Q ss_pred hcCCHHHHHHHH
Q 023133 150 RVGRVNDMLNEF 161 (287)
Q Consensus 150 ~~~~~~~a~~~~ 161 (287)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666555
No 313
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.33 E-value=0.68 Score=36.62 Aligned_cols=88 Identities=9% Similarity=0.029 Sum_probs=53.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH
Q 023133 146 DILGRVGRVNDMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224 (287)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (287)
.-|.+.|.+++|+..|...... .| |.+++..-..+|.+...+..|..=....+..+ ..-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 4577778888888887776554 34 66777777777777777776666555554332 11223344444444445566
Q ss_pred HHHHHHHHHHHh
Q 023133 225 EESLRLFNDMKQ 236 (287)
Q Consensus 225 ~~a~~~~~~~~~ 236 (287)
.+|.+-++..++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 666666665554
No 314
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.27 E-value=0.06 Score=37.18 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=45.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 445555566666666666666655545556666677777776665566555555211 1222344555555566
Q ss_pred HHHHHHHHHHH
Q 023133 154 VNDMLNEFASM 164 (287)
Q Consensus 154 ~~~a~~~~~~~ 164 (287)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 65555555543
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.14 E-value=0.44 Score=23.09 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 023133 109 IIFAFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~ 129 (287)
+...+...|++++|.+.|++.
T Consensus 7 lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 333444444444444444433
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.14 E-value=0.054 Score=37.42 Aligned_cols=85 Identities=11% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 144 VLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 144 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
++..+.+.+.++....+++.+...+...+....+.++..|++.+..++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 5566667777788888888887666555677778888888888777777777662111 223356677777788
Q ss_pred HHHHHHHHHHHH
Q 023133 224 IEESLRLFNDMK 235 (287)
Q Consensus 224 ~~~a~~~~~~~~ 235 (287)
++++..++.++-
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 877777777654
No 317
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.04 E-value=3.7 Score=30.10 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=51.9
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASPES----IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (287)
-+...|++++|..-|..+++.-.+.. ...|..-..++.+.+.++.|+.--.+.++.+ +........-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 34556777777777766666532111 2334444556667777777777666666654 112222333345666677
Q ss_pred CHHHHHHHHHHHHHc
Q 023133 153 RVNDMLNEFASMKEA 167 (287)
Q Consensus 153 ~~~~a~~~~~~~~~~ 167 (287)
++++|++-|..+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777777665
No 318
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.00 E-value=0.54 Score=28.33 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=19.4
Q ss_pred hcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQ 54 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~ 54 (287)
..++.++|+..|....+.-..++ .++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445554444444433333 344444444444444444433
No 319
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.82 E-value=3 Score=30.54 Aligned_cols=91 Identities=13% Similarity=0.142 Sum_probs=59.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc
Q 023133 146 DILGRVGRVNDMLNEFASMKEAGVVPD----FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221 (287)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (287)
.-+.++|++++|..-|....+.-.... ...|..-..++.+.+.++.|+.-....++.+ +........-..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 346678888888888888877522211 1334444566777888888888777777664 11222333345577788
Q ss_pred CCHHHHHHHHHHHHhC
Q 023133 222 GNIEESLRLFNDMKQQ 237 (287)
Q Consensus 222 g~~~~a~~~~~~~~~~ 237 (287)
..+++|+.-|..+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 8888888888888775
No 320
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.80 E-value=3.9 Score=31.60 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=38.6
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----
Q 023133 40 LVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK---- 115 (287)
Q Consensus 40 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 115 (287)
|+++++.++|.+++...-+.-+..-+........-|-.|++.+.+..+.++-.......-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 4455555555555544433332221222233333334455555555555555444433222233335544444433
Q ss_pred -cCCHHHHHHHH
Q 023133 116 -SRQIEKALLIF 126 (287)
Q Consensus 116 -~~~~~~a~~~~ 126 (287)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 35555555554
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.71 E-value=4.4 Score=30.28 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCc----ch-HhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 210 TYTALIDSFGRTGN-------IEESLRLFNDMKQQQIRP----SI-YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 210 ~~~~l~~~~~~~g~-------~~~a~~~~~~~~~~~~~~----~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
.+..+...|...|+ ...|.+.|.+..+..-.| +. ...-.+.....+.|+.++|.++|.++........
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34455566666666 344555666555432221 22 2333445567789999999999999988755444
Q ss_pred ChhhHhhhcC
Q 023133 278 GPKDFKRKAR 287 (287)
Q Consensus 278 ~~~~~~~~~r 287 (287)
+....++||
T Consensus 200 -~~~l~~~AR 208 (214)
T PF09986_consen 200 -EPKLKDMAR 208 (214)
T ss_pred -cHHHHHHHH
Confidence 555555554
No 322
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.67 E-value=4 Score=29.72 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=57.6
Q ss_pred HHHHHhcCchHHHHHHHHHHhhCCCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcC
Q 023133 180 LNNLRKIRRLDLCLIYFREMGESGIKPD--LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG 257 (287)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (287)
...+...+++++|..-++.........+ ...--.|.......|.+|+|++.++.....++ .......-.+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3456677788888877776664311111 11222345566777888888888777665432 2223344456677788
Q ss_pred ChHHHHHHHHHHhhcCCCC
Q 023133 258 KVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~ 276 (287)
+-++|..-|++...+.++.
T Consensus 174 ~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 174 DKQEARAAYEKALESDASP 192 (207)
T ss_pred chHHHHHHHHHHHHccCCh
Confidence 8888888888887776433
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.67 E-value=6.1 Score=31.89 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc---chHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 206 PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP---SIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
....++..++..+.+.|.++.|...+.++...+..+ +......-+..+-..|+.++|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344577888888888999999988888887643211 334445556667778888888888888766
No 324
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.50 E-value=3.1 Score=28.22 Aligned_cols=78 Identities=9% Similarity=0.122 Sum_probs=47.8
Q ss_pred cCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcc--hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 205 KPDLLTYTALIDSFGRTGN---IEESLRLFNDMKQQQIRPS--IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
.++..+--.+..++.++.+ ..+.+.+++.+.+.. .|+ ......|.-++.+.++++++.++.+...+..|+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4455555556666665543 555667777777522 222 2333445556778888888888888888777777665
Q ss_pred hhHh
Q 023133 280 KDFK 283 (287)
Q Consensus 280 ~~~~ 283 (287)
....
T Consensus 108 ~~Lk 111 (149)
T KOG3364|consen 108 LELK 111 (149)
T ss_pred HHHH
Confidence 4443
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.39 E-value=8.1 Score=32.76 Aligned_cols=175 Identities=9% Similarity=0.085 Sum_probs=93.1
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (287)
..-.++..+..+-.+.-+..+..+|+.-| -+...+..++.+|... ..+.-..+|+++.+..+ .|+..-.-|...|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 34445555666666666666666666543 3455666666766666 44556667777666653 33444444444444
Q ss_pred hcCCHHHHHHHHHHHhcCCCC-----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCc
Q 023133 115 KSRQIEKALLIFDHIKGLKCK-----PDLITYNIVLDILGRVGRVNDMLNEFASMKEA-GVVPDFISYNTLLNNLRKIRR 188 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 188 (287)
+ ++.+.+...|.++...-++ .-...|.-+...- ..+.+..+.+...+... |...-...+.-+-.-|....+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4 6666666666665433211 0112344443321 23455555555555332 333334445555566666777
Q ss_pred hHHHHHHHHHHhhCCCcCCHHHHHHHHHH
Q 023133 189 LDLCLIYFREMGESGIKPDLLTYTALIDS 217 (287)
Q Consensus 189 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 217 (287)
+++|++++..+.+.+ ..|...-..++.-
T Consensus 221 ~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 221 WTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 777777777766654 3344444444443
No 326
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.14 E-value=0.37 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.078 Sum_probs=16.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 249 LIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
+.-++.+.|++++|.++.+.+.+..|++...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3344555666666666666666655555443
No 327
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.11 E-value=0.61 Score=21.55 Aligned_cols=29 Identities=21% Similarity=0.202 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 246 YRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
+..+...+...|++++|...+++..+..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34445555555666666666665554443
No 328
>PRK09687 putative lyase; Provisional
Probab=91.06 E-value=6.3 Score=30.89 Aligned_cols=222 Identities=9% Similarity=-0.039 Sum_probs=136.5
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh----HHHHHHHHHHHhcCCCCcHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC----TQLLIFIEEVVQIASPESIIVVNRII 110 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~ 110 (287)
.....+.++...|. +.+...+..+.. .++...-...+.++...|+. .++...+..+... .++..+-...+
T Consensus 39 vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 39 KRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred HHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 56666667777765 344444445543 33555555566777777763 4567777766443 35566666666
Q ss_pred HHHHhcCC-----HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 023133 111 FAFAKSRQ-----IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK 185 (287)
Q Consensus 111 ~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (287)
.++...+. ...+...+..... .++..+-...+.++++.++ +++...+-.+.+. +|...-...+.++.+
T Consensus 113 ~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 113 NATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNS 185 (280)
T ss_pred HHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhc
Confidence 66655442 1334444444433 3455565667777777776 4566766666653 344555555666655
Q ss_pred cC-chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHH
Q 023133 186 IR-RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264 (287)
Q Consensus 186 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (287)
.+ +...+...+..+.. .++...-...+.++.+.|+ ..|...+-+..+.+ + .....+.++...|.. +|..
T Consensus 186 ~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p 255 (280)
T PRK09687 186 NKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLP 255 (280)
T ss_pred CCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHH
Confidence 43 24466666666664 3566677778888888888 45666666666543 2 234677888888885 7999
Q ss_pred HHHHHhhcCCCCCCh
Q 023133 265 IFEEMNSSLSDLAGP 279 (287)
Q Consensus 265 ~~~~~~~~~~~~~~~ 279 (287)
.+.++.+.+|+....
T Consensus 256 ~L~~l~~~~~d~~v~ 270 (280)
T PRK09687 256 VLDTLLYKFDDNEII 270 (280)
T ss_pred HHHHHHhhCCChhHH
Confidence 999998877755433
No 329
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=6.9 Score=30.49 Aligned_cols=25 Identities=0% Similarity=-0.035 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 139 ITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
..+..+..-|++.++.+.+.++..+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555555555554444
No 330
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=90.50 E-value=7 Score=30.47 Aligned_cols=139 Identities=7% Similarity=0.022 Sum_probs=93.9
Q ss_pred CChHHHHHHHHHHHh-cCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHh-cCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 023133 82 DDCTQLLIFIEEVVQ-IASPESIIVVNRIIFAFAKSR--QIEKALLIFDHIK-GLKCKPDLITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 157 (287)
....+|+++|+.... ..+-.|..+...+++...... ....-.++.+-+. ..+-.++..+...++..++..++|.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344566677663322 234456667777777666522 2222233333333 223467888889999999999999999
Q ss_pred HHHHHHHHHc-CCCCChhHHHHHHHHHHhcCchHHHHHHHHHH-----hhCCCcCCHHHHHHHHHHHHh
Q 023133 158 LNEFASMKEA-GVVPDFISYNTLLNNLRKIRRLDLCLIYFREM-----GESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 158 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~ 220 (287)
.+++...... +..-|...|..+|......|+..-...+..+- ...++..+...-..|-..+.+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 9999887655 56668899999999999999998888887652 355666666665555554443
No 331
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.27 E-value=0.58 Score=21.33 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=10.7
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 023133 248 SLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~ 267 (287)
.+..++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.22 E-value=1.2 Score=21.45 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 210 TYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 210 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777788888888888888888765
No 333
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=90.02 E-value=1.5 Score=25.27 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
++...++++.+... +-|..-.-.+|.++...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555555432 34555666667777777777777777776643
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=6.8 Score=29.55 Aligned_cols=16 Identities=6% Similarity=0.162 Sum_probs=9.2
Q ss_pred hhcCChhHHHHHHHHH
Q 023133 44 AETNDIDLSFQILKDL 59 (287)
Q Consensus 44 ~~~~~~~~a~~~~~~~ 59 (287)
.-.+.+++|-++|.+.
T Consensus 25 gg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 25 GGSNKYEEAAELYERA 40 (288)
T ss_pred CCCcchHHHHHHHHHH
Confidence 3344666666666554
No 335
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.90 E-value=4.9 Score=27.83 Aligned_cols=17 Identities=6% Similarity=0.126 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHHHHH
Q 023133 150 RVGRVNDMLNEFASMKE 166 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~ 166 (287)
..|+|.+|..+|+++.+
T Consensus 56 ~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 56 ARGNYDEAARILRELLS 72 (153)
T ss_pred HcCCHHHHHHHHHhhhc
Confidence 34444444444444443
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.79 E-value=3.4 Score=30.69 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=27.4
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (287)
.-+..+.+.+..++++...++-.+.+ +-+..+-..++..++-.|++++|..-++-.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444455555555555555544432 223334444555555555555555544443
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.73 E-value=0.61 Score=22.32 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 023133 111 FAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~ 130 (287)
.++.+.|++++|.+.|+++.
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 33444444444444444443
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=89.70 E-value=14 Score=32.74 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=106.8
Q ss_pred hHHHHHHHHHhhcCCCCc----hhHHHHHHHHh-hcCChhHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHhccCChH
Q 023133 16 SAAVRLLQSLRDKNIFLP----NAYNCVLVASA-ETNDIDLSFQILKDLLVSSRTLSSD-----CYTNFARAFIMTDDCT 85 (287)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~ 85 (287)
..|++.++.+.+....+| .++..+...+. ...+++.|...+++.....-.++-. +-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 345666666664433343 45666677665 6788999999999876543333322 1223455555555555
Q ss_pred HHHHHHHHHHhcC----CCCcHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCC---CCCCHhhHHHHHHHHH--hcCCHH
Q 023133 86 QLLIFIEEVVQIA----SPESIIVVNRI-IFAFAKSRQIEKALLIFDHIKGLK---CKPDLITYNIVLDILG--RVGRVN 155 (287)
Q Consensus 86 ~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~ 155 (287)
|...+++.++.- ..+-...+..+ +..+...++...|.+.++.+.... ..|....+-.++.+.. +.+.++
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 888888876542 11223344444 333334479999999998875432 1344444445555443 456677
Q ss_pred HHHHHHHHHHHcCC---------CCChhHHHHHHHHHH--hcCchHHHHHHHHHH
Q 023133 156 DMLNEFASMKEAGV---------VPDFISYNTLLNNLR--KIRRLDLCLIYFREM 199 (287)
Q Consensus 156 ~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 199 (287)
++.+.++.+..... .|...+|..+++.++ ..|+++.+...++++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78888777643221 234566777766544 466666766665554
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.57 E-value=1.4 Score=23.29 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 023133 214 LIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 214 l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
|..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 340
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.42 E-value=4 Score=26.13 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555555555666667777777777777777777777777776653
No 341
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=89.39 E-value=2.9 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=24.8
Q ss_pred CcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 240 RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
.|+..+|..++.++...|+.++|.++..++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56777777777777777777777777777766666
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.16 E-value=15 Score=32.49 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN 47 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 47 (287)
++|-.|.|+|++++|.++..............+...+..+....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCC
Confidence 46788999999999999996665554444457777788776653
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.97 E-value=1.1 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=7.4
Q ss_pred HHhhcCChhHHHHHHHHHH
Q 023133 42 ASAETNDIDLSFQILKDLL 60 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~ 60 (287)
+|...|+.+.|.+++++..
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333333333333333333
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.52 E-value=8.5 Score=28.72 Aligned_cols=184 Identities=15% Similarity=0.070 Sum_probs=105.9
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 157 (287)
|-..|-+..|.--|.+..... |.-+.+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++.--|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhh
Confidence 334455555555566665554 4456789999888999999999999999998764222222222222 33457889888
Q ss_pred HHHHHHHHHcCC-CCChhHHHHHHHHHHhcCchHHHHHH-HHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 158 LNEFASMKEAGV-VPDFISYNTLLNNLRKIRRLDLCLIY-FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 158 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.+-|...-+.+. .|-...|-.+.. ..-++.+|..- .++..+ .|..-|..-+-.|.- |++. ...+++++.
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 887777655432 333344444443 23355555543 344432 344444443333321 2211 122333333
Q ss_pred hCCC------CcchHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 236 QQQI------RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 236 ~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
...- ..-..||-.+..-+...|+.++|..+|+-....
T Consensus 224 a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 ADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2110 012356777888889999999999999876543
No 345
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.39 E-value=5.4 Score=31.89 Aligned_cols=90 Identities=11% Similarity=-0.005 Sum_probs=52.5
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQ 86 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 86 (287)
.-|.+.|.+++|+..|.......+..+..+..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHHH
Confidence 356777888888888877776666555666677777777777776665555544321 0011223333333333455566
Q ss_pred HHHHHHHHHhc
Q 023133 87 LLIFIEEVVQI 97 (287)
Q Consensus 87 a~~~~~~~~~~ 97 (287)
|.+-++..++.
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 66666555554
No 346
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.93 E-value=21 Score=32.53 Aligned_cols=87 Identities=6% Similarity=-0.005 Sum_probs=42.6
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcH-------HHHHHHH-HHHHhcCCHHHHHHHHHHHhcC----CCCCCHhhHHHHHHH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESI-------IVVNRII-FAFAKSRQIEKALLIFDHIKGL----KCKPDLITYNIVLDI 147 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~ 147 (287)
...++.+|..++.++...-..|+. ..++.+- ......|++++|.++.+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 445666666666665443222211 1222221 1123356666666665554332 112334445555556
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 023133 148 LGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~ 166 (287)
..-.|++++|..+..+..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~ 525 (894)
T COG2909 507 AHIRGELTQALALMQQAEQ 525 (894)
T ss_pred HHHhchHHHHHHHHHHHHH
Confidence 6666777777666655443
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.85 E-value=11 Score=29.41 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (287)
.+|+++|.-+.+..- . ..+-+.++.++....+..+|...+
T Consensus 150 ~KA~ELFayLv~hkg-k-~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHKG-K-EVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhcC-C-cccHhHHHHHHccccchhhHHHHH
Confidence 568888888776531 1 223344666777777776666554
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.81 E-value=2.4 Score=36.35 Aligned_cols=97 Identities=8% Similarity=0.039 Sum_probs=71.1
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHH
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (287)
+...|+...|...+.........-..+..-.|.+...+.|....|..++.+..... ...+.++..+.+++....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34467888888888776543211122334456666777788888988888877653 44567788888999999999999
Q ss_pred HHHHHHHhhcCCCCCChh
Q 023133 263 MTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~ 280 (287)
++.|+++.+..|+.+..+
T Consensus 696 ~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECE 713 (886)
T ss_pred HHHHHHHHhcCCCChhhH
Confidence 999999999988887643
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.73 E-value=11 Score=29.12 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 210 TYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 210 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.|..=|+.|....+-.....++++..
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34444555555555555555555443
No 350
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.65 E-value=12 Score=32.49 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=60.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH
Q 023133 113 FAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 192 (287)
..+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|....+ |..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence 34556666666665543 2555677777777777777777777766543 34555556666766655
Q ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFND 233 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 233 (287)
..+-....+.| +.| .-.-+|...|+++++.+++..
T Consensus 712 ~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHHHh
Confidence 55555555554 222 233345567777777776654
No 351
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.55 E-value=20 Score=31.84 Aligned_cols=224 Identities=11% Similarity=0.133 Sum_probs=95.8
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHh---
Q 023133 40 LVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS-PESIIVVNRIIFAFAK--- 115 (287)
Q Consensus 40 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 115 (287)
...+.-.|.++.|++.+-+ ..+...+...+...+.-+.-.+-..... ..+..... .+...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3444567888998888766 2223344444444443333222111111 22222110 1112446677777776
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHhhH-HHHHHHHHhcCCHHHHH-----------HHHHH-HHHcCCCC-ChhHH---HH
Q 023133 116 SRQIEKALLIFDHIKGLKCKPDLITY-NIVLDILGRVGRVNDML-----------NEFAS-MKEAGVVP-DFISY---NT 178 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~-----------~~~~~-~~~~~~~~-~~~~~---~~ 178 (287)
..+..+|.++|--+....-+.....+ .++-......++++.-+ .++++ ..-.+... +.... ..
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~ 419 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQ 419 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHH
Confidence 45788888888877654321122222 22222233333332211 11111 00001211 22222 22
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHHHhCC-----C-C
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALID-SFGRTGN-----------IEESLRLFNDMKQQQ-----I-R 240 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~-----------~~~a~~~~~~~~~~~-----~-~ 240 (287)
...-+...|++++|..+|.-..+.. .-....|.++. +...... ...|..+.+.....+ + .
T Consensus 420 ~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 420 AAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 2334666788888888887765321 11123333332 2332222 444555555554331 1 1
Q ss_pred cchHhHHHHHH-----HHHhcCChHHHHHHHHHHh
Q 023133 241 PSIYVYRSLID-----NLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 241 ~~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~ 270 (287)
.+..|+..|++ .+...|++++|++.++++.
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 23455555554 3468899999999998884
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.46 E-value=5 Score=34.53 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=40.1
Q ss_pred hcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 023133 45 ETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 124 (287)
..|+...|...+.........-.......|.....+.+....|-.++.+.+... ...+.++..+.++|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 345555555555444332111111122334444444454555555555444443 2333444455555555556666666
Q ss_pred HHHHHhcC
Q 023133 125 IFDHIKGL 132 (287)
Q Consensus 125 ~~~~~~~~ 132 (287)
.|++..+.
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 55555443
No 353
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.16 E-value=27 Score=33.02 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=47.7
Q ss_pred CChhHHHHHH----HHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchH--
Q 023133 171 PDFISYNTLL----NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY-- 244 (287)
Q Consensus 171 ~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 244 (287)
|+...+..+. ..+.....+++|.-+|+..-+. .--+.+|..+|++.+|+.+..++... .+..
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHH
Confidence 4554444433 3444556666666666554321 12456677777887777777766431 1221
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+-..|+.-+...+++-+|.++..+.
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHH
Confidence 2244555666666666666665554
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.68 E-value=3.5 Score=24.95 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCc-c-hHhHHHHHHHHHhcCChHHHHHHH
Q 023133 220 RTGNIEESLRLFNDMKQQQIRP-S-IYVYRSLIDNLKKMGKVDLAMTIF 266 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~a~~~~ 266 (287)
...+.++|+..|....+.-..| + ..++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665442222 1 234556666666666666665543
No 355
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.53 E-value=20 Score=30.93 Aligned_cols=127 Identities=12% Similarity=0.046 Sum_probs=87.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-ccC
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI-MTD 82 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 82 (287)
.||.---.....+.+..+++.+...-|..-.-|......=.+.|..+.+.++|++-.. +++.+...|...+.-+. ..|
T Consensus 50 ~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~ 128 (577)
T KOG1258|consen 50 TLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNG 128 (577)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCC
Confidence 3343333344456666777777765543325666666777788999999999999886 46677777777665444 557
Q ss_pred ChHHHHHHHHHHHhc-CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023133 83 DCTQLLIFIEEVVQI-ASP-ESIIVVNRIIFAFAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 131 (287)
+.+.....|+.+.+. |.. .+...|...|.--..++++.....+++++.+
T Consensus 129 d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 129 DPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred CHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 888888888877654 222 3456777778777778888888888888875
No 356
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.26 E-value=4.5 Score=27.05 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (287)
+..+-+..+..-++.|+......-+.+|.+.+|+..|.++|+-.+.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 45555666666677788888888888888888888888888877643 222233454444
No 357
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.17 E-value=25 Score=31.51 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=75.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDF--ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (287)
++.--|+-++|..+.++|.... .|-. .-...+..+|+-.|+.....+++.-.+.. ...|+.-+..+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444566677788888876542 2211 11234555677778877777777665543 255666677777777777888
Q ss_pred HHHHHHHHHHHhCCCCcchHhHHHHHH--HHHhcCChHHHHHHHHHHhh
Q 023133 225 EESLRLFNDMKQQQIRPSIYVYRSLID--NLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 225 ~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~ 271 (287)
+....+.+-+.+. ..|.+..-.++.- +|+-.|. .+|..+++-|..
T Consensus 588 ~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 8888888777664 4555554444443 3444443 578888877744
No 358
>PHA02875 ankyrin repeat protein; Provisional
Probab=86.09 E-value=19 Score=30.04 Aligned_cols=210 Identities=11% Similarity=0.060 Sum_probs=103.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH--HHHHHHHHHhc
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD--CYTNFARAFIM 80 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 80 (287)
+...++.|+.+-+..+++ .|..+. ......+...+..|+.+ +.+.+.+.|..|+.. .....+...+.
T Consensus 6 L~~A~~~g~~~iv~~Ll~----~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLLD----IGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHHH----CCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHH
Confidence 444557788776666554 454433 12334455556677765 445555566655432 11223445566
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh--HHHHHHHHHhcCCHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESII---VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT--YNIVLDILGRVGRVN 155 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 155 (287)
.|+.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~ 149 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK 149 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 788776555443 33211110 0123334445567664 4444445555554321 123344555677766
Q ss_pred HHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHH---HHHHHHHHHhcCCHHHHHH
Q 023133 156 DMLNEFASMKEAGVVPD---FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT---YTALIDSFGRTGNIEESLR 229 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~ 229 (287)
-+.. +.+.|..++ ..-.+.+.. .+..|+.+ +.+.+.+.|..|+... ...++......|+.+
T Consensus 150 ~v~~----Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~---- 216 (413)
T PHA02875 150 GIEL----LIDHKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID---- 216 (413)
T ss_pred HHHH----HHhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----
Confidence 5443 444554433 223333333 34556654 3444556666665432 123444445566654
Q ss_pred HHHHHHhCCCCcchH
Q 023133 230 LFNDMKQQQIRPSIY 244 (287)
Q Consensus 230 ~~~~~~~~~~~~~~~ 244 (287)
+.+.+.+.|..++..
T Consensus 217 iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 217 IVRLFIKRGADCNIM 231 (413)
T ss_pred HHHHHHHCCcCcchH
Confidence 455556677777653
No 359
>PRK10941 hypothetical protein; Provisional
Probab=86.00 E-value=11 Score=29.43 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChh
Q 023133 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 212 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (287)
+.|-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..=++...+..|+.|...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 344455666666666666666666531 22333344444456666666666666666666666665543
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.93 E-value=16 Score=29.27 Aligned_cols=146 Identities=14% Similarity=0.048 Sum_probs=93.3
Q ss_pred HHHHhhcCCCCchhHHHHHHHHhhcC------------ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 023133 22 LQSLRDKNIFLPNAYNCVLVASAETN------------DIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
|++....++....+|-.++..--..- -.+.-+.++++.++.+ +-+......++..+.+..+.+...+
T Consensus 8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444444433366766665432221 1456678888888773 3456677778888999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHhc------CCC------CCCH-----hhHHHHHHHHH
Q 023133 90 FIEEVVQIASPESIIVVNRIIFAFAK---SRQIEKALLIFDHIKG------LKC------KPDL-----ITYNIVLDILG 149 (287)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~------~~~------~~~~-----~~~~~l~~~~~ 149 (287)
-++++.... +.+...|...++.... .-.++....+|.+..+ .+. .++. ..+..+...+.
T Consensus 87 ~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 87 KWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999998875 5678888888876554 2245666666644322 111 0111 12333344456
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 023133 150 RVGRVNDMLNEFASMKEAGV 169 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~ 169 (287)
+.|..+.|..+++.+.+.++
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HCCchHHHHHHHHHHHHHHc
Confidence 88999999999999988765
No 361
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.79 E-value=22 Score=30.71 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=102.2
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..|..-+..-...|+++.+.-++++..-.- ..=...|-..++-....|+.+.+..++....+...+.++.+.-.-....
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 567777777777888888877777765321 1123344445555555577777777777666655433332222222223
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHh-hHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCCCChhHHHHHHHH-----HH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLI-TYNIVLDILGRVGRVNDML---NEFASMKEAGVVPDFISYNTLLNN-----LR 184 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~ 184 (287)
-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+. .++....+... +......+.-- +.
T Consensus 377 e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYK 452 (577)
T ss_pred HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHH
Confidence 34578888888888877652 4433 2222344455667777666 33333322211 21222222211 22
Q ss_pred hcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC
Q 023133 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (287)
-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 356778888888887766 3566666777776665544
No 362
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=85.71 E-value=2.6 Score=24.21 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
-.-.+|.++...|++++|.++++.+.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334455566666666666665555543
No 363
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.69 E-value=7.2 Score=24.95 Aligned_cols=15 Identities=13% Similarity=0.169 Sum_probs=6.1
Q ss_pred HHhcCCHHHHHHHHH
Q 023133 113 FAKSRQIEKALLIFD 127 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~ 127 (287)
+...|++++|..+.+
T Consensus 49 LmNrG~Yq~Al~l~~ 63 (115)
T TIGR02508 49 LMNRGDYQSALQLGN 63 (115)
T ss_pred HHccchHHHHHHhcC
Confidence 333444444444333
No 364
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.20 E-value=12 Score=27.00 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHhhcCCC
Q 023133 15 VSAAVRLLQSLRDKNIF 31 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~ 31 (287)
++.|.+.++.--..++.
T Consensus 7 FE~ark~aea~y~~nP~ 23 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL 23 (186)
T ss_dssp HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHhCcH
Confidence 34455555554444443
No 365
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.43 E-value=16 Score=27.79 Aligned_cols=114 Identities=10% Similarity=-0.020 Sum_probs=55.1
Q ss_pred hcCChhHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 023133 45 ETNDIDLSFQILKDLLVSSRTLSS-DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL 123 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 123 (287)
....++.|+..|.+.+. +.|+. ..|..-+-++.+..+++.+..--...++.. +..+-....+.........+++|+
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccHHH
Confidence 34445556655554443 34444 333444455555666666655555555542 222333334445555556666666
Q ss_pred HHHHHHh----cCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 023133 124 LIFDHIK----GLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161 (287)
Q Consensus 124 ~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 161 (287)
..+.+.. +..+.+....+..|..+--+.-...+..++.
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~ 140 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIR 140 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHH
Confidence 6665542 2233344445555555443333344444433
No 366
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.73 E-value=14 Score=26.64 Aligned_cols=62 Identities=19% Similarity=0.181 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ-----------IEKALLIFDHIKGLKCKPDLITYNIVLDIL 148 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (287)
+++|..-|++.+... |....++..+..+|...+. +++|...|++.... .|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 344555555555654 3344566667666665432 33444444444433 56666666665554
No 367
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.12 E-value=13 Score=25.76 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh
Q 023133 209 LTYTALIDSFGRTGN-IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (287)
..|.+++.+..+..- --.+..+|+-+.+.+.+++..-|..+|.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 345555555544333 22234445555544455555555555555444
No 368
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.73 E-value=21 Score=27.95 Aligned_cols=124 Identities=19% Similarity=0.130 Sum_probs=57.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHhh-------HHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCChhHHHHH
Q 023133 111 FAFAKSRQIEKALLIFDHIKGLKCKPDLIT-------YNIVLDILGRVGRVNDMLNEFASMK----EAGVVPDFISYNTL 179 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 179 (287)
+-..+.+++++|+..+.++...|+..|..+ ...+...|...|++..--++..... +..-+-......++
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 334455666666666666665555444332 2344555555555544333332221 11111122333444
Q ss_pred HHHHHhc-CchHHHHHHHHHHhhCCCcCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 180 LNNLRKI-RRLDLCLIYFREMGESGIKPD-----LLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 180 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
+..+... ..++..+.+.....+...+.. ...-.-++..+.+.|.+.+|+.+.+.+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4443322 234444444444333211111 112234677778888888887765544
No 369
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.54 E-value=17 Score=26.66 Aligned_cols=87 Identities=11% Similarity=-0.000 Sum_probs=41.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 023133 111 FAFAKSRQIEKALLIFDHIKGLKCKPDLITYN-----IVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK 185 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (287)
..+..++++++|+..++..... |....+. .|.+.....|.+++|+.+++...+.+.. ......-...+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3455566666666666555432 2222222 2334445556666666655554443221 1112223344555
Q ss_pred cCchHHHHHHHHHHhhC
Q 023133 186 IRRLDLCLIYFREMGES 202 (287)
Q Consensus 186 ~~~~~~a~~~~~~~~~~ 202 (287)
.|+-++|..-|....+.
T Consensus 172 kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 172 KGDKQEARAAYEKALES 188 (207)
T ss_pred cCchHHHHHHHHHHHHc
Confidence 56666666666555554
No 370
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=82.22 E-value=12 Score=25.99 Aligned_cols=45 Identities=16% Similarity=0.103 Sum_probs=19.4
Q ss_pred HhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH
Q 023133 25 LRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD 69 (287)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 69 (287)
+.+.|...+.--..++..+.+.++.-.|.++++++.+.+...+..
T Consensus 12 lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 12 LKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 333444333334444444444444444445555554444333333
No 371
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=82.01 E-value=24 Score=31.20 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=53.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhH------HHHHHHHHHHhcCCCCHHHHHHH
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDL------SFQILKDLLVSSRTLSSDCYTNF 74 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~~~~~~~~~l 74 (287)
+|..+|...|++-.+..+++.....+.... ..+|..++...+.|.++. +.+.+++ ..+.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 688999999999999999998876543322 678888999999998653 2333333 3356677888877
Q ss_pred HHHHhc
Q 023133 75 ARAFIM 80 (287)
Q Consensus 75 ~~~~~~ 80 (287)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766554
No 372
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=81.84 E-value=15 Score=26.51 Aligned_cols=20 Identities=0% Similarity=0.066 Sum_probs=10.8
Q ss_pred HHhccCChHHHHHHHHHHHh
Q 023133 77 AFIMTDDCTQLLIFIEEVVQ 96 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~ 96 (287)
.|.+.|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45555555555555555544
No 373
>PRK09687 putative lyase; Provisional
Probab=81.73 E-value=23 Score=27.77 Aligned_cols=199 Identities=15% Similarity=0.067 Sum_probs=119.9
Q ss_pred hHHHHHHHHhhcCCh----hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh-----HHHHHHHHHHHhcCCCCcHHH
Q 023133 35 AYNCVLVASAETNDI----DLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC-----TQLLIFIEEVVQIASPESIIV 105 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~ 105 (287)
.-...+.++++.|+. +++...+..+... .++...-...+.++...+.. ..+...+..... .++..+
T Consensus 70 vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~V 144 (280)
T PRK09687 70 ERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNV 144 (280)
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHH
Confidence 455556666677653 4566667666432 44555555555555544321 223333333222 345666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 023133 106 VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG-RVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184 (287)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (287)
-...+.++.+.++ +++...+-.+.+ .++...-...+.++.+.+ +...+...+..+... ++...-...+.++.
T Consensus 145 R~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg 217 (280)
T PRK09687 145 RFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHH
Confidence 6777788888877 456666666665 345555555556666543 244566666666643 46677777888888
Q ss_pred hcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHH
Q 023133 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLK 254 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (287)
+.++. .+...+-...+.+ + .....+.++...|+. +|...+..+.+. .||..+-...+.++.
T Consensus 218 ~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88884 5666665555543 2 234677888888885 688888888864 357776666666553
No 374
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.30 E-value=22 Score=27.11 Aligned_cols=118 Identities=6% Similarity=-0.078 Sum_probs=81.3
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH-HHHHHHHHhccCChHHH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDC-YTNFARAFIMTDDCTQL 87 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a 87 (287)
|....+++.|+.-|.+....++.+..-|..-+.++.+..+++.+..--.+.++ +.|+..- ...+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 34456788999988888887776666778888888999999988877666665 4566543 33455667788899999
Q ss_pred HHHHHHHHhc----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 88 LIFIEEVVQI----ASPESIIVVNRIIFAFAKSRQIEKALLIFDH 128 (287)
Q Consensus 88 ~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 128 (287)
+..+.+..+. .+++.......|..+=-+.=...+..++.++
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 9999887433 3445556677776654444444555554444
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.02 E-value=12 Score=24.00 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=20.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG 203 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 203 (287)
+...|++++|..+.+.+ ..||...|..+.. .+.|-.+++..-+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 49 LMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 33444555554444333 2344444444332 23344444444444444433
No 376
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.87 E-value=34 Score=29.06 Aligned_cols=88 Identities=9% Similarity=-0.028 Sum_probs=43.2
Q ss_pred HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 023133 43 SAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKA 122 (287)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 122 (287)
+...|+++.+...+...... +.....+...+++.....++++.|...-..|+...++ +..+........-..|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence 44556666665555444322 2233445555556666666666666666555544432 222222222223334555666
Q ss_pred HHHHHHHhcC
Q 023133 123 LLIFDHIKGL 132 (287)
Q Consensus 123 ~~~~~~~~~~ 132 (287)
...++++...
T Consensus 411 ~~~wk~~~~~ 420 (831)
T PRK15180 411 YHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhcc
Confidence 6666655543
No 377
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.73 E-value=31 Score=28.52 Aligned_cols=91 Identities=11% Similarity=0.079 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhc---------CCCCc
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSS--RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQI---------ASPES 102 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~ 102 (287)
..+.-+...|...|+++.|++.|.+.+.-- .+.....|..+|..-.-.|+|..+..+..+..+. .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 466666666666777777777666643321 1122334444555555556666555555544332 12344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIF 126 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~ 126 (287)
...+..+.....+ ++..|.+.|
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHH
Confidence 4445555444333 555555544
No 378
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.33 E-value=48 Score=30.45 Aligned_cols=260 Identities=14% Similarity=0.120 Sum_probs=143.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhc----C----------CCCc---hhH--HHHHHH--HhhcCChhHHHHHHHHHHHhcC
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDK----N----------IFLP---NAY--NCVLVA--SAETNDIDLSFQILKDLLVSSR 64 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~----~----------~~~~---~~~--~~l~~~--~~~~~~~~~a~~~~~~~~~~~~ 64 (287)
|.-.+..|+++.|..++++.... + ..|+ ... -.+..+ .....++++|..++.++...-.
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~ 446 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK 446 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence 45556788888888888765111 1 1111 111 122222 3456789999999888765422
Q ss_pred CCCH----H---HHHHHH-HHHhccCChHHHHHHHHHHHhc----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 65 TLSS----D---CYTNFA-RAFIMTDDCTQLLIFIEEVVQI----ASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 65 ~~~~----~---~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.|+. . .++.+- ......|+++.+.++.+...+. ...+....+..+..+..-.|++++|..+..+..+.
T Consensus 447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 2221 1 333332 2234568889998888776543 23456677788888888999999999988766543
Q ss_pred CCCCCHhhH---HHH--HHHHHhcCC--HHHHHHHHHHHHHc-----CC-CCChhHHHHHHHHHHhcCchHHHHHH----
Q 023133 133 KCKPDLITY---NIV--LDILGRVGR--VNDMLNEFASMKEA-----GV-VPDFISYNTLLNNLRKIRRLDLCLIY---- 195 (287)
Q Consensus 133 ~~~~~~~~~---~~l--~~~~~~~~~--~~~a~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~---- 195 (287)
.-..++..+ ..+ ...+...|+ +.+....|...... .. .+-..++..+..++.+ .+.+..-
T Consensus 527 a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~ 603 (894)
T COG2909 527 ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLG 603 (894)
T ss_pred HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhc
Confidence 212343333 322 233556673 33333334433222 11 1123445555555554 3333222
Q ss_pred HHHHhhCCCcCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCC----CcchHhHHHHHHH--HHhcCChHHHHHHHH
Q 023133 196 FREMGESGIKPDLLTY--TALIDSFGRTGNIEESLRLFNDMKQQQI----RPSIYVYRSLIDN--LKKMGKVDLAMTIFE 267 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 267 (287)
+.--......|-.... ..|+......|+.++|...++++..... .++...-...+.. -...|+.+++.....
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 604 IEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred chhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHH
Confidence 2222222112222222 3677888899999999999998875422 2333333333333 235688888877776
Q ss_pred H
Q 023133 268 E 268 (287)
Q Consensus 268 ~ 268 (287)
+
T Consensus 684 ~ 684 (894)
T COG2909 684 K 684 (894)
T ss_pred h
Confidence 6
No 379
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.15 E-value=50 Score=30.60 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.7
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLV 61 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 61 (287)
-|..|+..|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488888888888888899888888865
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=80.10 E-value=27 Score=27.42 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 023133 143 IVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 143 ~l~~~~~~~~~~~~a~~~~~~ 163 (287)
-++..+.+.|.+.+|+.+...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHH
Confidence 355666667777766655433
No 381
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.27 E-value=49 Score=29.93 Aligned_cols=148 Identities=9% Similarity=0.103 Sum_probs=79.6
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASPE---SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
-+.+.+.+++|+...+..... .+ ...++..++..+.-.|++++|-...-.|.. -+..-|...+..+...++
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccc
Confidence 345556777777766654332 22 345677788888888888888887777763 355556555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHH------------------HhhCCCcCCHHHHHHHH
Q 023133 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFRE------------------MGESGIKPDLLTYTALI 215 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~~l~ 215 (287)
...... -+.......+...|..++..+.. .+...-.++.++ ..+. .-+...-..|+
T Consensus 439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhhc---cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 443221 11111112234455555555444 111111111111 0111 11122233488
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 023133 216 DSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~~~~ 236 (287)
..|...+++..|..++-.+.+
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 888889999999888877664
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.23 E-value=13 Score=23.39 Aligned_cols=19 Identities=11% Similarity=0.190 Sum_probs=9.0
Q ss_pred HHhhcCChhHHHHHHHHHH
Q 023133 42 ASAETNDIDLSFQILKDLL 60 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~ 60 (287)
.+...|++++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3444455555555544443
No 383
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=79.21 E-value=41 Score=29.03 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=28.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHHH
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDL 59 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 59 (287)
.|+.-|.+.+++++|..++..|.-...... ...+.+++.+.+..--++....++.+
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~a 470 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAA 470 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 456677777777777777777644332111 23334444444443333333333333
No 384
>PRK13342 recombination factor protein RarA; Reviewed
Probab=78.70 E-value=38 Score=28.37 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHHh---cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCcchHhHH
Q 023133 176 YNTLLNNLRK---IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN-----IEESLRLFNDMKQQQIRPSIYVYR 247 (287)
Q Consensus 176 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~ 247 (287)
...++.++.+ .++.+.|..++..|.+.|..|....-..++.++...|. ..-|...++....-|.+--.....
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~ 309 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALA 309 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3344555444 47899999999999999877776666566666555553 333455555555666544333333
Q ss_pred HHHHHHHhcCChHHHHHHHHHH---hhcCCCCCChhhHh
Q 023133 248 SLIDNLKKMGKVDLAMTIFEEM---NSSLSDLAGPKDFK 283 (287)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~ 283 (287)
..+--++.+-+-..+...++++ .+..+..+.|.+..
T Consensus 310 ~~~~~l~~~pksn~~~~a~~~a~~~~~~~~~~~vp~~l~ 348 (413)
T PRK13342 310 QAVIYLALAPKSNAAYTAINAALADVREGGSLPVPLHLR 348 (413)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHHHHHhcCCCCCChhhc
Confidence 3333344444444444444444 33445555566654
No 385
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=78.11 E-value=16 Score=23.75 Aligned_cols=8 Identities=13% Similarity=0.214 Sum_probs=2.6
Q ss_pred hcCCHHHH
Q 023133 115 KSRQIEKA 122 (287)
Q Consensus 115 ~~~~~~~a 122 (287)
+.|++++|
T Consensus 52 NrG~Yq~A 59 (116)
T PF09477_consen 52 NRGDYQEA 59 (116)
T ss_dssp HTT-HHHH
T ss_pred hhHHHHHH
Confidence 33333333
No 386
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=78.09 E-value=18 Score=25.04 Aligned_cols=62 Identities=13% Similarity=0.101 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 55 ILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
+.+.+.+.|++++.. -..++..+...++.-.|..+++.+.+.+.+.+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555566665543 22355666666666777788887777765554444444445555444
No 387
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.38 E-value=35 Score=27.30 Aligned_cols=134 Identities=19% Similarity=0.142 Sum_probs=79.5
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh----cCCCCCCH
Q 023133 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQI-ASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK----GLKCKPDL 138 (287)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 138 (287)
++.|...++.|..+ +..+.++-.+..++..+. |-.--...+-.....|++.|+.+.|++.+.+.. ..|.+-|+
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 45555555555432 222333444444444433 222234566777888999999999998886653 34666777
Q ss_pred hhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 139 ITYNIVLD-ILGRVGRVNDMLNEFASMKEAGVVPDF----ISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 139 ~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
..+..-+. .|....-+.+-++..+.+.+.|...+. .+|..+- |....++.+|-.+|-+...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 66544333 344444456666667777777765443 3454443 3456788899888877653
No 388
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=77.12 E-value=46 Score=28.44 Aligned_cols=211 Identities=9% Similarity=0.088 Sum_probs=116.1
Q ss_pred hhHHHHHHHHHHHhc-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCHHHH-HH
Q 023133 49 IDLSFQILKDLLVSS-RTL-SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS-RQIEKA-LL 124 (287)
Q Consensus 49 ~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~ 124 (287)
....+.+++.....+ ..+ ....|..+.-.++..+... ..-..+...++..+...|..-+....+. .+++-- ..
T Consensus 337 I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r---~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~ 413 (568)
T KOG2396|consen 337 ILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR---EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEE 413 (568)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh---HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHH
Confidence 334444454444332 222 2344555544444444322 2223333334455666666665555532 233222 22
Q ss_pred HHHHHhcCCCCCCHhhHHHHHHHHHhcCC-HHHH-H-HHHHHHHHcCCCCChhHH-HHHHHHHHhcCchHHHHHHHHHHh
Q 023133 125 IFDHIKGLKCKPDLITYNIVLDILGRVGR-VNDM-L-NEFASMKEAGVVPDFISY-NTLLNNLRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a-~-~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 200 (287)
.|..+...-..+....|+... .++ ++.. . .++..+... ..|+..++ +.++..+.+.|...+|...+..+.
T Consensus 414 l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~ 487 (568)
T KOG2396|consen 414 LFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSV-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQ 487 (568)
T ss_pred HHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHh-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333443322233444454444 222 2221 1 223333333 33455444 567777888888999999999988
Q ss_pred hCCCcCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC-CCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 201 ESGIKPDLLTYTALIDSFG--RTGNIEESLRLFNDMKQQ-QIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
... +|+...|..+++.-. ..-+...+.++++.+... | .|+..|...+.-=...|..+.+-.++-++.+
T Consensus 488 ~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 488 ELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 774 677788887776432 223377888899888743 5 6777787777776788888888777766644
No 389
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.84 E-value=46 Score=28.38 Aligned_cols=108 Identities=16% Similarity=0.008 Sum_probs=72.8
Q ss_pred HHHHhcCCHHHHHHHHHHHh---cCCC--CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCC---
Q 023133 111 FAFAKSRQIEKALLIFDHIK---GLKC--KP---DLITYNIVLDILGRVGRVNDMLNEFASMKE-------AGVVPD--- 172 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~---~~~~--~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~--- 172 (287)
..+.-.|++.+|.+++...- +.|. .| ....||.|...+.+.|.+..+..+|..... .|++|.
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34555789999988886542 2221 12 223457777778888888888888877653 354443
Q ss_pred --------hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 173 --------FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 173 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
..+||. .-.|...|++-.|.+.|.+.... +..++..|-.|..+|..
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 133443 33467889999999999888764 35677889999988864
No 390
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=76.72 E-value=9.7 Score=20.50 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=16.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchHhHHHHH
Q 023133 220 RTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (287)
+.|-.+++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3455555555555555555555555554444
No 391
>PRK10941 hypothetical protein; Provisional
Probab=76.59 E-value=34 Score=26.70 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=54.2
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCcHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS-PESIIVVNRIIFAF 113 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 113 (287)
..+.+-.+|.+.++++.|+++.+.+..-. +.++.-+.--.-.|.+.|.+..|..-++..++.-. .|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 45666678888888999988888888752 33444455566668888888888888888776542 35555555555544
Q ss_pred H
Q 023133 114 A 114 (287)
Q Consensus 114 ~ 114 (287)
.
T Consensus 262 ~ 262 (269)
T PRK10941 262 E 262 (269)
T ss_pred h
Confidence 3
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.48 E-value=20 Score=24.11 Aligned_cols=48 Identities=8% Similarity=0.185 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
-+..+-++.+...++.|+......-+++|-+.+++..|.++|+-++..
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 355666777777788899999999999999999999999999888743
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.23 E-value=43 Score=27.72 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHh
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVS 62 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 62 (287)
.-+.+.|..+|+++.|++.|.+.+.--.... +.|-.+|..-.-.|+|........+..+.
T Consensus 154 ~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 154 EDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 3456677788888888888887554322111 45666777777778888887777776543
No 394
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=76.01 E-value=23 Score=25.89 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.|+...|..++.++...|+.++|.++.+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 677777777777777777777777777777653
No 395
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.58 E-value=61 Score=29.11 Aligned_cols=117 Identities=10% Similarity=-0.066 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCh--hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 023133 151 VGRVNDMLNEFASMKEAG-VVPDF--ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEES 227 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 227 (287)
..+.+.|...+....... ..+.. ..+..+.......+..+++...+....... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345677777777764432 22111 223333333333322556666666544332 2333444444455578888888
Q ss_pred HHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 023133 228 LRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (287)
...+..|.... .-...-.--+..++...|+.++|..+|+++.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888876532 2233444456667677899999988888873
No 396
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=75.32 E-value=68 Score=30.31 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHhcC
Q 023133 103 IIVVNRIIFAFAKSR--QIEKALLIFDHIKGL 132 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 132 (287)
..-...++.+|++.+ ++++|+....++.+.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344556667777777 677777777777653
No 397
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.49 E-value=3.5 Score=27.87 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=19.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
-|.-.+|..+|..|.+.|-+|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3445567777777777777665 45666554
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=74.16 E-value=9.1 Score=30.03 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=28.7
Q ss_pred cCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHH
Q 023133 205 KPDLLT-YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247 (287)
Q Consensus 205 ~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (287)
.||..+ |+..|..-.+.||+++|++++++.++.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344443 5577777777888888888888887777654444443
No 399
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.88 E-value=36 Score=27.33 Aligned_cols=119 Identities=5% Similarity=-0.003 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (287)
+.+|+++|++..+.+.. .|.+......--...+.+.+++...-...-..+.-+..+.|+..+|.+.++++
T Consensus 232 i~~AE~l~k~ALka~e~----------~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGET----------IYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDL 301 (556)
T ss_pred HHHHHHHHHHHHHHHHH----------HHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Q ss_pred -HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHH
Q 023133 95 -VQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNI 143 (287)
Q Consensus 95 -~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (287)
.+..+..-..+...|+.++....-+.++..++-+..+...+.+.....+
T Consensus 302 ~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 302 MKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 400
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.88 E-value=70 Score=29.02 Aligned_cols=151 Identities=9% Similarity=0.086 Sum_probs=85.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCC--CchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCC
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIF--LPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDD 83 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (287)
|+-+.+.+.+++|+.+-+.....-.. +.......+..+.-.|+++.|-...-.|... +..-|..-+..+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 56677888899999887765543322 1267788888888889999988888777532 33444444444444444
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH------------------HhcCCCCCCHhhHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDH------------------IKGLKCKPDLITYNIVL 145 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~~l~ 145 (287)
......+ +.......+..+|..++..+.. .+...-.+...+ ..+. .-+...-..|+
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 3322211 1111111345566666666655 222221111111 0000 11222334578
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 023133 146 DILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~ 166 (287)
..|...++++.|..++-.+++
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHccChHHHHHHHHhccC
Confidence 888999999999998877664
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.75 E-value=43 Score=26.47 Aligned_cols=71 Identities=6% Similarity=0.018 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcchHhH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ-----QQIRPSIYVY 246 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 246 (287)
+++.....|..+|.+.+|.++.++....+ +.+...+-.|+..+...||--.+.+-++.+.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45666778889999999999999988765 66777888899999999998888887777753 3665554443
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.18 E-value=12 Score=20.08 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHcCCCCCh
Q 023133 154 VNDMLNEFASMKEAGVVPDF 173 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~ 173 (287)
..++...++.|.+.|+..+.
T Consensus 18 I~~~~~~l~~l~~~g~~is~ 37 (48)
T PF11848_consen 18 ISEVKPLLDRLQQAGFRISP 37 (48)
T ss_pred hhhHHHHHHHHHHcCcccCH
Confidence 33333333333333333333
No 403
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.02 E-value=10 Score=29.82 Aligned_cols=32 Identities=25% Similarity=0.303 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK 135 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (287)
.-|+..|....+.||+++|++++++..+.|+.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34456666666666666666666666666643
No 404
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.63 E-value=29 Score=24.08 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhHHHHHHHHHHhcCc-hHHHHHHHHHHhhCCCcCCHHHHHHH
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGV-----VPDFISYNTLLNNLRKIRR-LDLCLIYFREMGESGIKPDLLTYTAL 214 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 214 (287)
.|+++.-....++......+++.+..... ..+...|..++.+..+..- ---+..+|.-+.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34444444444555555554444422100 1234456666666544444 23345555555555556666666666
Q ss_pred HHHHHhc
Q 023133 215 IDSFGRT 221 (287)
Q Consensus 215 ~~~~~~~ 221 (287)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6665554
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=72.05 E-value=23 Score=31.11 Aligned_cols=93 Identities=9% Similarity=-0.080 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (287)
.|..-+..+...++.. ...++.++.+-...+......++..|.+.|-.+.+..+.+.+-..-. ...-|..-+.-+.
T Consensus 374 lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ 449 (566)
T PF07575_consen 374 LWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFI 449 (566)
T ss_dssp THHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHH
Confidence 4555555544444322 44555555443334555566677777777777777777665543321 1233555555667
Q ss_pred hcCCHHHHHHHHHHHhc
Q 023133 115 KSRQIEKALLIFDHIKG 131 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~ 131 (287)
+.|+...+..+.+.+.+
T Consensus 450 ra~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 450 RAGDYSLVTRIADRLLE 466 (566)
T ss_dssp -----------------
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777666666555543
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.84 E-value=22 Score=22.35 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=9.1
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 023133 218 FGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 218 ~~~~g~~~~a~~~~~~~~~ 236 (287)
....|++++|...+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3444555555555554443
No 407
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=71.64 E-value=26 Score=30.79 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~ 129 (287)
++..+..-+.+.|++..|+..+-+.
T Consensus 427 I~~~~~~~~~~~~~~g~AL~~~~ra 451 (566)
T PF07575_consen 427 ICKILGQRLLKEGRYGEALSWFIRA 451 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC
Confidence 3344444444444555555444443
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=71.45 E-value=34 Score=26.25 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHhh----CC-CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 177 NTLLNNLRKIRRLDLCLIYFREMGE----SG-IKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 177 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
..+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.-++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456667777777777777777642 12 2333445556667777777777766655444
No 409
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.92 E-value=60 Score=27.02 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=4.9
Q ss_pred HHhhcCChhHH
Q 023133 42 ASAETNDIDLS 52 (287)
Q Consensus 42 ~~~~~~~~~~a 52 (287)
..+..|+.+.+
T Consensus 74 ~A~~~g~~~~v 84 (413)
T PHA02875 74 DAVEEGDVKAV 84 (413)
T ss_pred HHHHCCCHHHH
Confidence 33444554443
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.74 E-value=23 Score=22.06 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=29.4
Q ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHH
Q 023133 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (287)
+.+++..+.+.|+ .+......+-.+-...|+.+.|.+++..+. +| +..|...++++...|..+-|
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 3344444554442 222233322222234455566666666555 32 23345555555555554433
No 411
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.68 E-value=25 Score=22.51 Aligned_cols=32 Identities=19% Similarity=0.061 Sum_probs=17.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 248 SLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
.|--.|.+.|+.+.|.+-|++=...+|....-
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34444556666666666666666665554433
No 412
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=70.46 E-value=30 Score=25.50 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=12.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhc
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDK 28 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~ 28 (287)
.+++.+...|+++.|-++|--+...
T Consensus 46 ~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 46 DLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3444555555555555555544433
No 413
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=69.73 E-value=52 Score=25.80 Aligned_cols=190 Identities=11% Similarity=0.030 Sum_probs=110.7
Q ss_pred hcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh----ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----c
Q 023133 45 ETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI----MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK----S 116 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 116 (287)
..+++..+...+......+.. .....+...+. ...+...|..+++...+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 445566666666665543321 22333333333 23467778888887766663 2233345555554 3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc-----C--CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----
Q 023133 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV-----G--RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK---- 185 (287)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 185 (287)
.+..+|...|++..+.|..+...+...+...|..- - +...|...+.+.-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 47888888888888777433323333444444332 1 2336888888887776 33444445444433
Q ss_pred cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCCCcchHhHH
Q 023133 186 IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG---------------NIEESLRLFNDMKQQQIRPSIYVYR 247 (287)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (287)
..+..+|...|....+.|. ......+. .+...| +...|...+......+.........
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3477888888888888764 22222222 444344 7888899999888887666655555
No 414
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=69.66 E-value=54 Score=25.94 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=59.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 023133 108 RIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (287)
.++..+.+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+.- . +...|+.+=..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---H
Confidence 34555566666666666666554 33344556667778888888888887765531 0 111111111111 1
Q ss_pred chHHHHHHHHHHhhC-----CCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 023133 188 RLDLCLIYFREMGES-----GIKPDLLTYTALIDSFGRTGNIEESLR 229 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~ 229 (287)
++++-.....++.+. -...|+..|..+..+|.-.|+...+.+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 222222222222211 114677888888888888887666543
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=69.42 E-value=10 Score=17.54 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=8.4
Q ss_pred ChhHHHHHHHHHhhcCC
Q 023133 14 NVSAAVRLLQSLRDKNI 30 (287)
Q Consensus 14 ~~~~a~~~~~~~~~~~~ 30 (287)
+.+.|..+|+++....+
T Consensus 2 ~~~~~r~i~e~~l~~~~ 18 (33)
T smart00386 2 DIERARKIYERALEKFP 18 (33)
T ss_pred cHHHHHHHHHHHHHHCC
Confidence 34455555555554443
No 416
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=68.63 E-value=58 Score=25.93 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=35.0
Q ss_pred HhcCCHHHHHHHHHH-HHHcCCCCChh----HHHHHHHHHHhcCchH-HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC
Q 023133 149 GRVGRVNDMLNEFAS-MKEAGVVPDFI----SYNTLLNNLRKIRRLD-LCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222 (287)
Q Consensus 149 ~~~~~~~~a~~~~~~-~~~~~~~~~~~----~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (287)
.+...+++......+ |++.+ -|+.. .|+.++++-.-..+-+ -|.+.++ ...+|..|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalr---------hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR---------HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH---------HHHhhhHHHHHHhcCC
Confidence 344455565555544 44444 34543 4666665432221111 1222222 2346778888888888
Q ss_pred CHHHH
Q 023133 223 NIEES 227 (287)
Q Consensus 223 ~~~~a 227 (287)
+.+-.
T Consensus 336 ~sEL~ 340 (412)
T KOG2297|consen 336 QSELE 340 (412)
T ss_pred hHHHH
Confidence 76654
No 417
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.58 E-value=57 Score=25.77 Aligned_cols=99 Identities=14% Similarity=0.075 Sum_probs=66.0
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--
Q 023133 101 ESIIVVNRIIFAFAKSRQIEKALLIFDHIKG----LKCKPDLITYN-IVLDILGRVGRVNDMLNEFASMKEAGVVPDF-- 173 (287)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 173 (287)
.-..++..+...|++.++.+.+.++..+..+ .|.+-|+...- .|.-.|....-+++-++..+.|.+.|...+.
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 4467888999999999999999888766543 35555544322 2333455555678888899999988865443
Q ss_pred --hHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 174 --ISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 174 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
.+|..+. +....++.+|-.++.+...
T Consensus 193 RyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 193 RYKVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred hHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 3444333 2345678888888777653
No 418
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.09 E-value=69 Score=26.55 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=39.5
Q ss_pred HHHhhcCChhHHHHHHHHHHHhcCCCCHH--HHHHHHHHHh--ccCChHHHHHHHHHHHhc
Q 023133 41 VASAETNDIDLSFQILKDLLVSSRTLSSD--CYTNFARAFI--MTDDCTQLLIFIEEVVQI 97 (287)
Q Consensus 41 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 97 (287)
..+.+.+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999999886 555554 3444555554 446778888888887665
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=68.04 E-value=6.8 Score=26.57 Aligned_cols=32 Identities=28% Similarity=0.351 Sum_probs=24.6
Q ss_pred hcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHH
Q 023133 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF 218 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (287)
..|.-..|..+|+.|++.|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34666789999999999998887 477776543
No 420
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=67.88 E-value=78 Score=27.14 Aligned_cols=216 Identities=7% Similarity=0.086 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhccC------ChHHHHHHHHHHHhcC-C-CCcHHHHHHHHHHHHhcCCHHH-H
Q 023133 52 SFQILKDLLVSSRTLSSDCYTNFARAFIMTD------DCTQLLIFIEEVVQIA-S-PESIIVVNRIIFAFAKSRQIEK-A 122 (287)
Q Consensus 52 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-a 122 (287)
...+|++..+ ..|+...|+..|..|...- .......+++...+.+ . +.....|..+.-.+...+...+ |
T Consensus 301 ~~~v~ee~v~--~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVK--TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 3455655554 2456666766776665432 3444555565554433 1 2334455555555555554333 3
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhc-CCHHH-HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc-hHH--HHHHHH
Q 023133 123 LLIFDHIKGLKCKPDLITYNIVLDILGRV-GRVND-MLNEFASMKEAGVVPDFISYNTLLNNLRKIRR-LDL--CLIYFR 197 (287)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--a~~~~~ 197 (287)
..+-.+.. ..|...|..-+....+. .+.+- -.+.|..+...-..+-...|+... .|+ ++. -..++.
T Consensus 379 ~~l~~e~f----~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~ 449 (568)
T KOG2396|consen 379 VKLTTELF----RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIIS 449 (568)
T ss_pred HHhhHHHh----cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHH
Confidence 33333333 45666665555444422 12222 122333344332233334444433 122 221 112233
Q ss_pred HHhhCCCcCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHH---HHhcCChHHHHHHHHHHhhcC
Q 023133 198 EMGESGIKPDLLTY-TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDN---LKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 198 ~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~~~~~~ 273 (287)
.....+ .|+..|+ +.++.-+.+.|-.++|.+++..+... .+|+...|..+|.. ...+| ..-+..+|+.|...+
T Consensus 450 a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~f 526 (568)
T KOG2396|consen 450 ALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREF 526 (568)
T ss_pred HHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHh
Confidence 333333 4555443 56778888899999999999999886 46788888888864 23334 788899999998888
Q ss_pred CCCCChhhHh
Q 023133 274 SDLAGPKDFK 283 (287)
Q Consensus 274 ~~~~~~~~~~ 283 (287)
+ .+++-|.
T Consensus 527 g--~d~~lw~ 534 (568)
T KOG2396|consen 527 G--ADSDLWM 534 (568)
T ss_pred C--CChHHHH
Confidence 7 4455554
No 421
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=67.53 E-value=17 Score=21.15 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023133 138 LITYNIVLDILGRVGRVNDMLNEFASMKEAG 168 (287)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 168 (287)
...++.++..+++..-.++++..+.+..+.|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444444
No 422
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.47 E-value=64 Score=28.83 Aligned_cols=91 Identities=12% Similarity=0.080 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCHhhHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCChhHHHHH
Q 023133 108 RIIFAFAKSRQIEKALLIFDHIKGLK--CKPDLITYNIVLDILGRVGRVN------DMLNEFASMKEAGVVPDFISYNTL 179 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 179 (287)
+|..+|...|++..+.++++.+.... -+.=...+|..|....+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78889999999999999998887642 1223446788888888888754 3344444433 44577888888
Q ss_pred HHHHHhcCchHHHHHHHHHHhh
Q 023133 180 LNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
+.+-..--+-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765553333334444444443
No 423
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.41 E-value=98 Score=28.08 Aligned_cols=27 Identities=4% Similarity=0.028 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
|..+.++|.-..+.+.+.++++++.+.
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 455677777778888888888877763
No 424
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=67.25 E-value=32 Score=22.44 Aligned_cols=87 Identities=7% Similarity=-0.095 Sum_probs=46.7
Q ss_pred CChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 47 NDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIF 126 (287)
Q Consensus 47 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (287)
...++|..+.+.+...+. .....--+-+..+.+.|++++| +..-... ..||...|-+|. -.+.|--+++...+
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~--a~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALC--AWKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHH--HHHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHH--HHhhccHHHHHHHH
Confidence 346777777777765442 1111222233455677888877 2222222 357777776654 45778888888888
Q ss_pred HHHhcCCCCCCHhhH
Q 023133 127 DHIKGLKCKPDLITY 141 (287)
Q Consensus 127 ~~~~~~~~~~~~~~~ 141 (287)
.++...| .|....|
T Consensus 93 ~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 93 TRLASSG-SPELQAF 106 (116)
T ss_dssp HHHCT-S-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 8777665 4544444
No 425
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.14 E-value=59 Score=25.47 Aligned_cols=183 Identities=11% Similarity=0.021 Sum_probs=111.5
Q ss_pred hccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----
Q 023133 79 IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR---- 150 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 150 (287)
...+++..+...+......+. ......+...|.. ..+..+|.++|....+.|. ......|...|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 345667777777777666442 2334444444443 3457889999987777653 2223334444443
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----C--chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh---
Q 023133 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI-----R--RLDLCLIYFREMGESGIKPDLLTYTALIDSFGR--- 220 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 220 (287)
..+..+|..+|+...+.|..+...+...+...|..- - +...|...+.++...+ +......+...|..
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 337899999999999888654323344444444432 1 3347888998888776 44445555555543
Q ss_pred -cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcC---------------ChHHHHHHHHHHhhcCC
Q 023133 221 -TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG---------------KVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 221 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---------------~~~~a~~~~~~~~~~~~ 274 (287)
..+.++|...|....+.|. ......+- .+...| +...|...+.......+
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 3478999999999998874 22222222 344444 77788888887755543
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.60 E-value=26 Score=26.90 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh----c-CCCCHHHHHHHHHHHhccCChHHHHH
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS----S-RTLSSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
+..|...|........ .......+...|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+....
T Consensus 161 L~~A~~~f~~~~~~R~-~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 161 LEKAYEQFKKYGQNRM-ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHhccchH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3455555554433111 1156778889999999999999999888432 2 23445566677788888899888877
Q ss_pred HHHHHH
Q 023133 90 FIEEVV 95 (287)
Q Consensus 90 ~~~~~~ 95 (287)
+.-++.
T Consensus 240 ~~leLl 245 (247)
T PF11817_consen 240 TSLELL 245 (247)
T ss_pred HHHHHh
Confidence 655543
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.00 E-value=92 Score=27.27 Aligned_cols=159 Identities=15% Similarity=0.072 Sum_probs=94.0
Q ss_pred cCCHHHHHHHHHHHhcCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH-------HHcCCCC------
Q 023133 116 SRQIEKALLIFDHIKGLK-----------CKPDLITYNIVLDILGRVGRVNDMLNEFASM-------KEAGVVP------ 171 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~------ 171 (287)
.+.+++|...|.-....- -+..+.+.-.+...+...|+.+.|..++++. ..-.+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345667777665544321 0112334445556677778766666555443 2222222
Q ss_pred -------ChhHHHHH---HHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC---
Q 023133 172 -------DFISYNTL---LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFG-RTGNIEESLRLFNDMKQQ--- 237 (287)
Q Consensus 172 -------~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~--- 237 (287)
|...|.++ +....+.|-+..|+++.+.+.+....-|+.....+|+.|+ +..++.-.+++++.....
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 22223332 4556778889999998888887764546777777888775 567788788888777533
Q ss_pred CCCcchHhHHHHHHHHHhcCC---hHHHHHHHHHHhhcCC
Q 023133 238 QIRPSIYVYRSLIDNLKKMGK---VDLAMTIFEEMNSSLS 274 (287)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~ 274 (287)
..-|+..--.+++..|.+... -..|...+.++....|
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 234555444555555555444 4566777777766665
No 428
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=65.76 E-value=47 Score=23.78 Aligned_cols=38 Identities=5% Similarity=-0.037 Sum_probs=17.6
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ 118 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 118 (287)
.++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34444555555555555444443333334444444443
No 429
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.40 E-value=11 Score=31.65 Aligned_cols=105 Identities=14% Similarity=0.084 Sum_probs=67.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCchHHHHHHHHHHhhCCCcCC-HHHHHHHHHHHHhcC
Q 023133 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISY-NTLLNNLRKIRRLDLCLIYFREMGESGIKPD-LLTYTALIDSFGRTG 222 (287)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 222 (287)
...+...+.++.|..++.+..+. .||...| ..=..++.+.+++..|..=+....+.. |+ ...|-.=..++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34455677888888888888775 3544443 333367778888888887777766653 33 223444445566667
Q ss_pred CHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh
Q 023133 223 NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 223 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (287)
.+.+|...|+.... +.|+..-....+.-|-.
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 77777777777665 46777777766665543
No 430
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.85 E-value=5.4 Score=31.79 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=49.6
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHhcCchHHHH
Q 023133 115 KSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDF-ISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 193 (287)
..|.++.|++.|...+... ++....|.--.+++.+.+++..|++=+....+.+ ||. ..|-.=-.+-...|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 4466667777776666553 3344445455556666666666666665555432 222 22322233334456777777
Q ss_pred HHHHHHhhCCCcCC
Q 023133 194 IYFREMGESGIKPD 207 (287)
Q Consensus 194 ~~~~~~~~~~~~~~ 207 (287)
+.+....+.+..+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77776666654443
No 431
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.77 E-value=81 Score=26.16 Aligned_cols=55 Identities=7% Similarity=-0.025 Sum_probs=34.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCHh--hHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 023133 112 AFAKSRQIEKALLIFDHIKGLKCKPDLI--TYNIVLDILG--RVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 167 (287)
.+.+.+++..|.++|+.+.+. ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888877765 444443 3444445554 355677777777776554
No 432
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.45 E-value=80 Score=25.98 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=36.8
Q ss_pred HHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 023133 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFG-RTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 236 (287)
+..+.+.|-+..|.++.+-+...+..-|......+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4556677777777777777776653335555556666664 56667666666666543
No 433
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.17 E-value=38 Score=22.13 Aligned_cols=53 Identities=17% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHH------------HhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQS------------LRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLV 61 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 61 (287)
++|+.+|... +......+++. +.+.+ -|..++..|...|..++|++++.++..
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~-----~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHG-----KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcC-----CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 5667777766 55554444431 11111 356666666666666666666666554
No 434
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.83 E-value=42 Score=22.60 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=52.8
Q ss_pred HHhcCChhHHHHHHHHHhhcCCC-----CchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccC
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIF-----LPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTD 82 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 82 (287)
+-..+.......++++....-.. .+.-|-.+--.|++.- +.+.++|..|...|+... ...|..-...+...|
T Consensus 36 ~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 36 YPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 33345555555566554433211 1223444444444433 389999999999887665 456777788888999
Q ss_pred ChHHHHHHHHHH
Q 023133 83 DCTQLLIFIEEV 94 (287)
Q Consensus 83 ~~~~a~~~~~~~ 94 (287)
++++|.++++..
T Consensus 114 ~~~~A~~I~~~G 125 (126)
T PF08311_consen 114 NFKKADEIYQLG 125 (126)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
No 435
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=63.76 E-value=8.4 Score=22.26 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHhhcCCCCchhH
Q 023133 13 GNVSAAVRLLQSLRDKNIFLPNAY 36 (287)
Q Consensus 13 g~~~~a~~~~~~~~~~~~~~~~~~ 36 (287)
-+++.|...|.++...+..|+++|
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 477888888888888777776443
No 436
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.26 E-value=6.2 Score=31.47 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=45.0
Q ss_pred hcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 023133 45 ETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALL 124 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 124 (287)
..|.++.|++.+...+..+ ++....|..-.+++.+.+++..|++=+....+.. +.+..-|-.--.+-...|+|++|-.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHH
Confidence 4455666666666655442 3334444445555666666666666555555543 1122222222223333466666666
Q ss_pred HHHHHhcCCCCC
Q 023133 125 IFDHIKGLKCKP 136 (287)
Q Consensus 125 ~~~~~~~~~~~~ 136 (287)
.+....+.++.+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 666666554433
No 437
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.84 E-value=29 Score=29.21 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCC
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL-ITYNIVLDILGRVGR 153 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 153 (287)
+..+...+.++.|..++.++++.. +..+..|..-..++.+.+++..|+.=+....+.. |+. ..|..-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHH
Confidence 344556677788888887777764 2344444444467777788877777666666542 322 223233334444455
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 023133 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNL 183 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 183 (287)
+.+|...|+.... +.|+..-....+.-|
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 5666666655544 456666666555544
No 438
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=62.72 E-value=46 Score=22.69 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=32.9
Q ss_pred HHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 023133 21 LLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRT 65 (287)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 65 (287)
..+...+.|.... ..+..++-=+...|+++.|+++.+-.++.|.+
T Consensus 35 ~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 35 WVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCC
Confidence 3444445444333 67777777888999999999999999988854
No 439
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=62.05 E-value=69 Score=24.45 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=30.9
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHH
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM-TDDCTQLLIFIEEV 94 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~ 94 (287)
.++..+-+.++++++...+.++...+...+..-.+.+..+|-. .|....+.+++...
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 4555666667777777777777766666666555555555432 23444444444444
No 440
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=61.80 E-value=32 Score=22.61 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=21.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 023133 39 VLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNF 74 (287)
Q Consensus 39 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 74 (287)
++..+.++...++|+++++-|.+.| ..+...-+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eL 101 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKEL 101 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4555566677778888888877776 3344433333
No 441
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=61.58 E-value=82 Score=25.16 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
++++.|...++.|.-.++..+.-.+.+.=.+..++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555566666666665555555555556666666666654
No 442
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.38 E-value=37 Score=21.15 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 023133 158 LNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEES 227 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 227 (287)
.+++..+.+.|+- +......+-.+-...|+.+.|.+++..+. .| |+ .|..+++++...|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 3445555555532 33333333332234456666666666665 42 32 455566666665554443
No 443
>PRK05414 urocanate hydratase; Provisional
Probab=61.27 E-value=23 Score=30.16 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=81.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH----HHHHHHHHHhcC-chHH
Q 023133 117 RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS----YNTLLNNLRKIR-RLDL 191 (287)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~-~~~~ 191 (287)
.++++|++..++..+.+ +|-+. |-...|.++|.++.+.|+.||..| ....+.+|+=.| .+++
T Consensus 217 ~~Ldeal~~~~~a~~~~-~~~SI------------g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee 283 (556)
T PRK05414 217 DDLDEALALAEEAKAAG-EPLSI------------GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEE 283 (556)
T ss_pred CCHHHHHHHHHHHHHcC-CceEE------------EEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHH
Confidence 46777777777776655 23222 223456778888888888887644 222333555555 4555
Q ss_pred HHHHHHHHhhC---CCcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCcchHhHHHHHHHH-------------
Q 023133 192 CLIYFREMGES---GIKPDLLTYTALIDSFGRTGN--IEESLRLFNDMKQQQIRPSIYVYRSLIDNL------------- 253 (287)
Q Consensus 192 a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~------------- 253 (287)
+.++..+=.+. -...+..-.-..+..+.+.|- +|-.-.+..+..+.|+. +...|-..+..|
T Consensus 284 ~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~G~~~fDYGN~~r~~a~~aG~~-~aF~~P~fV~~~irplF~~G~GPFR 362 (556)
T PRK05414 284 AAELRAEDPEEFVKAAKASMARHVEAMLAFQARGAYVFDYGNNIRQMAFDAGVE-NAFDFPGFVPAYIRPLFCEGKGPFR 362 (556)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHCCcc-ccCCCCCchhhhcchhhhcCCCCce
Confidence 55544321100 000011111112222333331 22222333444444433 222222222222
Q ss_pred --HhcCChHHHHHHHHHHhhcCCCCCChhhHhhhcC
Q 023133 254 --KKMGKVDLAMTIFEEMNSSLSDLAGPKDFKRKAR 287 (287)
Q Consensus 254 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r 287 (287)
+-+|+.++-.+.=+.+.+..|++.....|.+.||
T Consensus 363 WvalSGdpeDi~~TD~~~~e~~~~~~~~~~WI~~A~ 398 (556)
T PRK05414 363 WVALSGDPEDIYKTDAAVKELFPDDEHLHRWIDMAR 398 (556)
T ss_pred EEEcCCCHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 3468888888777777888898888888888764
No 444
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=60.88 E-value=30 Score=26.20 Aligned_cols=53 Identities=6% Similarity=0.053 Sum_probs=30.7
Q ss_pred HhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.+.++.+.+.+++.+..+.- +-....|-.+...-.+.|+++.|.+.+++..+.
T Consensus 6 ~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34556666666666665441 223445666666666666666666666666653
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.81 E-value=63 Score=23.58 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhcCCCCc--HHH-----HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 84 CTQLLIFIEEVVQIASPES--IIV-----VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
++.|+.+|+.+.+....|. ... --..+..|.+.|.+++|.+++++... .|+.......+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 4678888888876653331 111 22334579999999999999999987 3566555555555555444
No 446
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.44 E-value=49 Score=22.26 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCc-chHhHHHHHHHHHhcCChHHHHHHHHH
Q 023133 226 ESLRLFNDMKQQQIRP-SIYVYRSLIDNLKKMGKVDLAMTIFEE 268 (287)
Q Consensus 226 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (287)
.+.++|..|..+|+-- -...|......+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555666655544422 234455555555556666666666554
No 447
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=59.66 E-value=28 Score=19.24 Aligned_cols=23 Identities=9% Similarity=0.121 Sum_probs=12.0
Q ss_pred HHHHHhhcCChhHHHHHHHHHHH
Q 023133 39 VLVASAETNDIDLSFQILKDLLV 61 (287)
Q Consensus 39 l~~~~~~~~~~~~a~~~~~~~~~ 61 (287)
+..++.+.|+++.|.+..+.+++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555555555555555554
No 448
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.47 E-value=2.4e+02 Score=29.78 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHh-hcCCCCCC
Q 023133 208 LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMN-SSLSDLAG 278 (287)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 278 (287)
..+|-.......+.|.++.|...+-+..+.+ -...+--.+..+-..|+...|+.++++.. ...|+..+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~ 1738 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT 1738 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC
Confidence 4578888888889999999988877777654 23455566777889999999999999986 34455333
No 449
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=59.45 E-value=31 Score=20.78 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
|..-.--|-+.|++++|+..+++..+
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33334445566777777776666554
No 450
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.35 E-value=33 Score=19.96 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=25.9
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 171 PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
|+...++.++...++-.-.+.++..+.+..+.| ..+..+|..-+..+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344555566666665555666666666666555 3444555444444443
No 451
>PRK09857 putative transposase; Provisional
Probab=59.23 E-value=89 Score=24.81 Aligned_cols=101 Identities=12% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 023133 73 NFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152 (287)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (287)
.++.-..+.+++.+....+..+......++.. +..++....+.++.++..++++.+.+. .+......-++..-+.+.|
T Consensus 177 ~ll~k~i~~~dl~~~~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG 254 (292)
T PRK09857 177 ELIQKHIRQRDLMGLVEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEG 254 (292)
T ss_pred HHHHHHcCcHhHHHHHHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHHcCCCCChhH
Q 023133 153 RVNDMLNEFASMKEAGVVPDFIS 175 (287)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~ 175 (287)
.-+++.++..+|...|+.++...
T Consensus 255 ~qe~~~~ia~~ml~~g~~~~~I~ 277 (292)
T PRK09857 255 EQSKALHIAKIMLESGVPLADIM 277 (292)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHH
No 452
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.12 E-value=64 Score=23.10 Aligned_cols=37 Identities=11% Similarity=-0.061 Sum_probs=17.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc
Q 023133 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR 188 (287)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (287)
++.-.|.++++.+.+.+..++..|..-.+..+...|-
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3334455555555554444444444444444444443
No 453
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.07 E-value=1.4e+02 Score=26.97 Aligned_cols=95 Identities=6% Similarity=-0.023 Sum_probs=49.7
Q ss_pred cCchHHHHHHHHHHhhCC-CcCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHH
Q 023133 186 IRRLDLCLIYFREMGESG-IKPDL--LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262 (287)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (287)
..+.+.|...+....... ..+.. .....+.......+..+++...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345567777777654322 22221 123334333333332456666666544321 2444455555566688899988
Q ss_pred HHHHHHHhhcCCCCCChhhH
Q 023133 263 MTIFEEMNSSLSDLAGPKDF 282 (287)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~ 282 (287)
...+..|.......+....|
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW 351 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYW 351 (644)
T ss_pred HHHHHhcCHhhccCHhhHHH
Confidence 88888874443333333333
No 454
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.25 E-value=50 Score=21.57 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 210 TYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 210 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 366777777777777777777777765
No 455
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=58.23 E-value=79 Score=23.91 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---ChhHH--HHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHH
Q 023133 135 KPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVP---DFISY--NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL 209 (287)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 209 (287)
.++..-+|.|+--|.-...+.+|-+.|.. +.|+.| |..++ ..-|......|+.+.|++....+...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 45555666666666655555656655543 334444 22222 234555677788888887777665332233332
Q ss_pred HHHHHHH----HHHhcCCHHHHHHHHHH
Q 023133 210 TYTALID----SFGRTGNIEESLRLFND 233 (287)
Q Consensus 210 ~~~~l~~----~~~~~g~~~~a~~~~~~ 233 (287)
.+-.|.. =..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2222221 13455666666666654
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.64 E-value=85 Score=24.09 Aligned_cols=131 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
|..|++.-++.-|=...+++.+.= --...+--|.+..+.+--.++++-....+++.+..-...++ +...|+..
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEPI-----QSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMR 209 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEPI-----QSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMR 209 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhhH-----HhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHH
Q ss_pred HHHHHHHHHH------------hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHH
Q 023133 86 QLLIFIEEVV------------QIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIV 144 (287)
Q Consensus 86 ~a~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (287)
+|+.-++.-. +.--.|.+.....++..+.+ +++++|.+++.++-+.|+.|....-+..
T Consensus 210 QalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 210 QALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred HHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHHHHHHH
No 457
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.54 E-value=1e+02 Score=24.92 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHh----hCCCcCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCcch----H
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMG----ESGIKPDLLTYTALIDS-FGRTGNIEESLRLFNDMKQQQIRPSI----Y 244 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~----~ 244 (287)
..+......|++.|+.+.|.+.+++.. ..|.+.|+..+.+-+.. |....-..+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 344555566677777776666655443 33555555444332222 22333344444444455555544433 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
+|..+- |..-.++.+|..+|-.....+
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence 333332 223346666666666654443
No 458
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=57.14 E-value=99 Score=24.72 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 023133 123 LLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK 185 (287)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (287)
.++++.+.+.++.|.-.++.-+.-.+.+.=...+.+.+|+.+... ..-|..++..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 467788888889999999888888888888899999999998864 3336667766663
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.83 E-value=1.9e+02 Score=27.98 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 71 YTNFARAFIMTDDCTQLLIFIEEVVQIAS---PESIIVVNRIIFAFAKSRQIEKALLIF 126 (287)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~ 126 (287)
|..+++.+-+.+-.+.+.++-..+++.-. +.-..+++.+.+.....|.+-+|...+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 44555666666666666665555444311 112234455555555556555554444
No 460
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=56.73 E-value=71 Score=22.89 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=13.6
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFG 219 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (287)
+.+.|+-.+.+|++.|-.|....-..++.+..
T Consensus 3 D~dAAlywlarml~~GeDp~~i~RRL~i~AsE 34 (168)
T PF12002_consen 3 DPDAALYWLARMLEGGEDPRFIARRLIIIASE 34 (168)
T ss_dssp -HHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 44555555555555554443333333333333
No 461
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.71 E-value=1.5e+02 Score=26.55 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHH-hcCChhHHHHHHHHHhhcCCCCc------hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC----CCHHHHHH
Q 023133 5 YIEKLC-KAGNVSAAVRLLQSLRDKNIFLP------NAYNCVLVASAETNDIDLSFQILKDLLVSSRT----LSSDCYTN 73 (287)
Q Consensus 5 li~~~~-~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 73 (287)
+...|. ...+++.|+..+++.......+. .....++..+.+.+... |...+++.++.--. +-...|..
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 334444 56789999999987644332222 23445667777776655 99888887654222 22223333
Q ss_pred H-HHHHhccCChHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHhcCC---------CCCCH
Q 023133 74 F-ARAFIMTDDCTQLLIFIEEVVQIA---SPESIIVVNRIIFAFA--KSRQIEKALLIFDHIKGLK---------CKPDL 138 (287)
Q Consensus 74 l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~ 138 (287)
+ +..+...+++..|.+.++.+.... ..+-..++..++.+.. +.+..+++.+.++++.... ..|..
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 3 222333479999999998876432 2455555555555544 3455667777776653211 13456
Q ss_pred hhHHHHHHHHH--hcCCHHHHHHHHHHH
Q 023133 139 ITYNIVLDILG--RVGRVNDMLNEFASM 164 (287)
Q Consensus 139 ~~~~~l~~~~~--~~~~~~~a~~~~~~~ 164 (287)
.+|..+++.++ ..|++..+...++++
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777776654 677777777666554
No 462
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.51 E-value=1e+02 Score=24.77 Aligned_cols=46 Identities=9% Similarity=-0.100 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
.-+.++++..+.+. -+...+...+..+.+..+.++..+-++++...
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33444555444422 23444445555555555555555555555544
No 463
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=56.44 E-value=1e+02 Score=24.65 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHH-HHHhcCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCChhHHHHHHHHHHhcC
Q 023133 114 AKSRQIEKALLIF-DHIKGLKCKPDLI----TYNIVLDILGRVGRVNDMLNEFAS-MKEAGVVPDFISYNTLLNNLRKIR 187 (287)
Q Consensus 114 ~~~~~~~~a~~~~-~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~ 187 (287)
.+...+++..... ++|.+.++ |+.. .|..++++-- |.+-.++..+ ... ...+|.-|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsave----WnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVE----WNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHh----hchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 3344455555444 45565554 5544 5777776543 3322222222 111 2357889999999999
Q ss_pred chHHHH
Q 023133 188 RLDLCL 193 (287)
Q Consensus 188 ~~~~a~ 193 (287)
+.+-..
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877543
No 464
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=56.40 E-value=41 Score=22.01 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=22.4
Q ss_pred HHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 180 LNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 180 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
+..+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333344444566666666555544555555555555555543
No 465
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.20 E-value=88 Score=23.80 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=20.7
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRT 65 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 65 (287)
.++..++-=+...|+++.|+++.+-.++.|.+
T Consensus 84 ~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 84 DVLMTVMVWRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred CeeeEeeeeeeeccCHHHHHHHHHHHHHcCCC
Confidence 34444555556777777777777777776643
No 466
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.16 E-value=2.7e+02 Score=29.42 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=71.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCc--hhHHHHHH-HHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLP--NAYNCVLV-ASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
+..+-.+++.+.+|.-.++.-........ ..+..++. .|+..+++|....+...... .| ..+ .-+-.....
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~--sl~-~qil~~e~~ 1462 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP--SLY-QQILEHEAS 1462 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc--cHH-HHHHHHHhh
Confidence 44566778888888888877422111111 33444444 88888888887777664211 12 222 233345667
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
|++..|...|+.+.+.+ ++....++.++......+.++.+.-..+-..
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 88888888888888776 3445566666665556666666666554443
No 467
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=56.10 E-value=29 Score=29.44 Aligned_cols=158 Identities=15% Similarity=0.167 Sum_probs=79.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhH----HHHHHHHHHhcC-chH
Q 023133 116 SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFIS----YNTLLNNLRKIR-RLD 190 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~-~~~ 190 (287)
..++++|++..++..+.+ +|-+. |-...|.++|.++.+.|+.||..| ....+.+|+=.| .++
T Consensus 207 ~~~ldeal~~~~~a~~~~-~~~SI------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEG-KPISI------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcC-CceEE------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 346777777777776655 22222 223456778888888888887643 223333455555 455
Q ss_pred HHHHHHHHHhhCC---CcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCcchHhHHHHHHHH------------
Q 023133 191 LCLIYFREMGESG---IKPDLLTYTALIDSFGRTGN--IEESLRLFNDMKQQQIRPSIYVYRSLIDNL------------ 253 (287)
Q Consensus 191 ~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~------------ 253 (287)
++.++..+=.+.- ...+..-.-..+..+.+.|- +|-.-.+..+..+.|+. +...|-..+..|
T Consensus 274 e~~~lr~~dp~~~~~~~~~Sm~rhv~Am~~~~~~Ga~~fDYGN~~r~~a~~aG~~-~aF~~PgfV~~~irplF~~G~GPF 352 (545)
T TIGR01228 274 DADKLRQEEPEAYVKAAKQSMAKHVRAMLAFQKQGSVTFDYGNNIRQVAKEEGVE-DAFDFPGFVPAYIRPLFCRGKGPF 352 (545)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeeccHHHHHHHHHcCcc-ccCCCCCchhhhcchhhhCcCCCc
Confidence 5544433211000 00011111111222223331 22222333344444433 233332222222
Q ss_pred ---HhcCChHHHHHHHHHHhhcCCCCCChhhHhhhcC
Q 023133 254 ---KKMGKVDLAMTIFEEMNSSLSDLAGPKDFKRKAR 287 (287)
Q Consensus 254 ---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~r 287 (287)
+-+|+.++-.+.=+.+.+..|++.....|.+.||
T Consensus 353 RWvaLSGdpeDi~~TD~~~~e~~~~~~~~~~WI~~A~ 389 (545)
T TIGR01228 353 RWVALSGDPADIYRTDAAVKELFPEDAHLHRWIDMAQ 389 (545)
T ss_pred eeEecCCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3468888877777777888888888888888764
No 468
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=55.76 E-value=1e+02 Score=24.51 Aligned_cols=79 Identities=6% Similarity=-0.094 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 023133 155 NDMLNEFASMKEAGV----VPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRL 230 (287)
Q Consensus 155 ~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 230 (287)
+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... .++...-..++.+++...+.+...++
T Consensus 147 ~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 147 AEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 444455555444211 22333333444444444443333333333322 22344444555555555555555555
Q ss_pred HHHHHh
Q 023133 231 FNDMKQ 236 (287)
Q Consensus 231 ~~~~~~ 236 (287)
++....
T Consensus 224 l~~~l~ 229 (324)
T PF11838_consen 224 LDLLLS 229 (324)
T ss_dssp HHHHHC
T ss_pred HHHHcC
Confidence 555554
No 469
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=54.84 E-value=37 Score=22.21 Aligned_cols=45 Identities=7% Similarity=0.169 Sum_probs=26.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCC
Q 023133 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGK 258 (287)
Q Consensus 214 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (287)
++..+...+..-.|.++++.+.+.+...+..|....++.+.+.|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444445555666777777666555566655555666666554
No 470
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.81 E-value=69 Score=22.21 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=32.6
Q ss_pred HHHcCCCCChhHHHHHHHHHHhc-CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH
Q 023133 164 MKEAGVVPDFISYNTLLNNLRKI-RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (287)
+.+.|.+++.. -..++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 8 LKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 44556554432 23344444433 34556777777776666555666655556666655543
No 471
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=54.67 E-value=5.2 Score=21.94 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=16.8
Q ss_pred cCChhHHHHHHHHHhhcCCCCchh
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNA 35 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~ 35 (287)
.-+++.|...|..+...|..|+++
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred CCCHHHHHHHHHHHHHcCCCChHh
Confidence 347889999999998888877744
No 472
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.42 E-value=1.8e+02 Score=26.78 Aligned_cols=109 Identities=13% Similarity=0.110 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCcchHhHHH
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN-----IEESLRLFNDMKQQQIRPSIYVYRS 248 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~ 248 (287)
...+.++.+ ++.++++.|..++.+|.+.|..|....-..++.+....|. ..-|...++-...-|++--......
T Consensus 260 d~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~pE~~~~laq 338 (725)
T PRK13341 260 DTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYPLAQ 338 (725)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCcchhhHHHH
Confidence 344444443 3568899999999999999877766555555555545553 2223444444455564433333333
Q ss_pred HHHHHHhcCChHHHHHHHHHH---hhcCCCCCChhhHhh
Q 023133 249 LIDNLKKMGKVDLAMTIFEEM---NSSLSDLAGPKDFKR 284 (287)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~~ 284 (287)
..-.++.+-+-..+ ..++++ .+..+..+.|.|...
T Consensus 339 ~~~~la~apKSns~-~a~~~a~~~~~~~~~~~vP~hlr~ 376 (725)
T PRK13341 339 AALYLATAPKSNSV-LGFFDALKKVREEQVQDVPNHLRD 376 (725)
T ss_pred HHHHHHcCCCccHH-HHHHHHHHHHHhcCCCCCChHHhC
Confidence 33334444444444 222222 333455566666543
No 473
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=54.01 E-value=2.2e+02 Score=27.80 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=90.5
Q ss_pred HhccCChHHHHH------HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH-------hcCCCCCCHhhHHHH
Q 023133 78 FIMTDDCTQLLI------FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHI-------KGLKCKPDLITYNIV 144 (287)
Q Consensus 78 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 144 (287)
....+.+.++.+ ++......-.+.....|..+...+-+.++.++|...=... ....-+-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344455555555 5543322223556677888888888899998888765433 222212233455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----C--CCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC-----C--CcCCHHH
Q 023133 145 LDILGRVGRVNDMLNEFASMKEA-----G--VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES-----G--IKPDLLT 210 (287)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~ 210 (287)
.......++...|...+.+.... | .+|...+++.+-..+...+.++.|.++.+.+.+. | --++..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555666777777776665432 1 2333444555555555668888888888877642 1 1234556
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 023133 211 YTALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~ 231 (287)
+..+...+...+++..|....
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 777777777777777665543
No 474
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=53.44 E-value=2.3e+02 Score=27.74 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=94.6
Q ss_pred HHHhcCCHHHHHH------HHH-HHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCC--CCChhHHH
Q 023133 112 AFAKSRQIEKALL------IFD-HIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK-----EAGV--VPDFISYN 177 (287)
Q Consensus 112 ~~~~~~~~~~a~~------~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~--~~~~~~~~ 177 (287)
.....|.+.++.+ ++. .|... .++....|..+...+.+.|+.++|+..-.... -.|. .-+...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~-h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVL-HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhc-chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3444566666655 444 22222 13344567788888889999999987655431 1122 12345566
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhC-----C-CcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---Ccch
Q 023133 178 TLLNNLRKIRRLDLCLIYFREMGES-----G-IKPD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQ----QI---RPSI 243 (287)
Q Consensus 178 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---~~~~ 243 (287)
.+...+...++...|...+.+.... | ..|. ..+++.+-..+...++++.|.++.+.+.+. .. -++.
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6666666666777777777666431 1 1344 344455544455668899999999888753 11 2345
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 244 YVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.++..+...+...+++..|....+.-
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 66777777777777777766555544
No 475
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=53.22 E-value=1e+02 Score=23.65 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=6.9
Q ss_pred hcCChHHHHHHHHHH
Q 023133 255 KMGKVDLAMTIFEEM 269 (287)
Q Consensus 255 ~~g~~~~a~~~~~~~ 269 (287)
+.++.+.+..+.+-+
T Consensus 204 ~~~~~~~~~~iv~WL 218 (246)
T PF07678_consen 204 KRGDLEEASPIVRWL 218 (246)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHH
Confidence 334444444444444
No 476
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=52.86 E-value=1.4e+02 Score=25.22 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=51.7
Q ss_pred HcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhC
Q 023133 166 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDS--------FGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~ 237 (287)
...+.||..+.+.+...++..-..+-...+|+-..+.+ .|=..-+..|+-. -.+...-++++++++.|...
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 34577888888877777777777777777777777665 3433333333211 12334467788888877654
Q ss_pred CCCcchHhHHHHHHHHH
Q 023133 238 QIRPSIYVYRSLIDNLK 254 (287)
Q Consensus 238 ~~~~~~~~~~~li~~~~ 254 (287)
--.-|+.-+-.|..-|+
T Consensus 255 L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYS 271 (669)
T ss_pred cccccchhHHHHHHHHh
Confidence 22234444455555443
No 477
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=52.85 E-value=70 Score=21.65 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=36.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcC----CCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSR----TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQ 96 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (287)
..|..+-..|....+.+.+...|.+....-. .|+......-+..+...|++-+|++..+.+..
T Consensus 53 rlYf~vQ~m~i~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L~~ 119 (126)
T PF07378_consen 53 RLYFAVQLMYIDPEDADEARDLYRRLLEELLQAFADPDAREGLDEANELVEAGRYYKALKALRKLIP 119 (126)
T ss_pred HHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCcHHHHHHHHHHhHH
Confidence 5676666677666666666666655544322 33333333344455566777777766666543
No 478
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=52.46 E-value=75 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
|.-++.+.++++.+.++.+.+.+.
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333455555556555555555543
No 479
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.45 E-value=1.1e+02 Score=23.79 Aligned_cols=27 Identities=11% Similarity=-0.140 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 101 ESIIVVNRIIFAFAKSRQIEKALLIFD 127 (287)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~ 127 (287)
-++.....+...|.+.|++.+|+..|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467788888899999999988887664
No 480
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=52.11 E-value=40 Score=22.29 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=20.1
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (287)
++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555555555555544444444444444444443
No 481
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.95 E-value=1.6e+02 Score=25.43 Aligned_cols=181 Identities=8% Similarity=0.009 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHhhcCCCCc--h-----hHHHHHHHHhhcCChhHHHHHHHHHHHhc-CCCCH-------HHHHHHHH-HH
Q 023133 15 VSAAVRLLQSLRDKNIFLP--N-----AYNCVLVASAETNDIDLSFQILKDLLVSS-RTLSS-------DCYTNFAR-AF 78 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~--~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~-~~ 78 (287)
.|+|+...++.+..+...+ . ....++.+-.-.|++.+|++-..+|.+-- -.|.+ .....++. -+
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 3455555555555542222 1 22333334455799999999988887542 12331 11222333 34
Q ss_pred hccCChHHHHHHHHHHHhcCCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHH--------HHHH-
Q 023133 79 IMTDDCTQLLIFIEEVVQIASPESIIVV--NRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNI--------VLDI- 147 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------l~~~- 147 (287)
...+.++.|+.-|....+.-...|...+ ..+.-.|.+.|+.+.-.++++.+. +++..++.. .+.+
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGL 453 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHH
Confidence 4678999999999887765444454433 345567888888887777777765 333333211 1111
Q ss_pred -HHhcCCHHHHHHHHHHHHHcCCCCC-----hhHHHHHHHHHHhcCchHHHHHHHHHH
Q 023133 148 -LGRVGRVNDMLNEFASMKEAGVVPD-----FISYNTLLNNLRKIRRLDLCLIYFREM 199 (287)
Q Consensus 148 -~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 199 (287)
....+++.+|...+++-.+..-.-| .-....+-..+...|+..++.+...-.
T Consensus 454 faf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 2367899999999988765421111 112222333455667777777666543
No 482
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=51.62 E-value=45 Score=19.14 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=23.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH-----HhcCChHHHHHH
Q 023133 219 GRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL-----KKMGKVDLAMTI 265 (287)
Q Consensus 219 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~ 265 (287)
.+.|++-+|-++++.+=...-.+....+..+|... .+.|+.+.|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 34566666666666665332223444555555432 345666655554
No 483
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.59 E-value=65 Score=20.90 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC--ChhHHHHHHHHHHHhc
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN--DIDLSFQILKDLLVSS 63 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 63 (287)
.++..|...|+.++|..-+.++... ...+.....++..+...+ .-+....++..+...+
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 4566777778888888888776433 111134444444444432 2233344555555444
No 484
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.57 E-value=26 Score=23.16 Aligned_cols=15 Identities=13% Similarity=-0.064 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHhc
Q 023133 49 IDLSFQILKDLLVSS 63 (287)
Q Consensus 49 ~~~a~~~~~~~~~~~ 63 (287)
.-.|.++++.+.+.+
T Consensus 23 ~~ta~ei~~~l~~~~ 37 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKG 37 (120)
T ss_dssp SEEHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhhhcc
Confidence 333444444444333
No 485
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.28 E-value=1.4e+02 Score=24.62 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=31.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 023133 110 IFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG-RVGRVNDMLNEFASMK 165 (287)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 165 (287)
|..+.+.|-+..|.++.+-+......-|......+|+.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 4455566666666666666665543224444445555554 4555655555555543
No 486
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.14 E-value=81 Score=21.88 Aligned_cols=34 Identities=9% Similarity=0.186 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4444455555544443333333333334444444
No 487
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=50.17 E-value=76 Score=21.33 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC-CCcc-hHhHHHH----HHHHHhcCChHHHHHHHHHH
Q 023133 208 LLTYTALIDSFGRTGNIEESLRLFNDMK----QQQ-IRPS-IYVYRSL----IDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~-~~~~-~~~~~~l----i~~~~~~g~~~~a~~~~~~~ 269 (287)
...+..|..++...|++++++.--+..+ ++| +..| -..|-.. ..++-..|+.++|+..|+..
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4456677778888888877665444433 122 2222 2223222 23566789999999988754
No 488
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=49.97 E-value=1.5e+02 Score=24.78 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=66.2
Q ss_pred ChhHHHHHHHHHHh---cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCcch
Q 023133 172 DFISYNTLLNNLRK---IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN-----IEESLRLFNDMKQQQIRPSI 243 (287)
Q Consensus 172 ~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 243 (287)
+-..+.-+++++.+ -.+.+.|..++.+|.+.|-.|-...-..++-++...|. ..-|...++....-|.+-..
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~~ 324 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEAR 324 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchHH
Confidence 33344456666654 46899999999999999876776666667777766664 33455556666666654433
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHH---hhcCCCCCChhhHhh
Q 023133 244 YVYRSLIDNLKKMGKVDLAMTIFEEM---NSSLSDLAGPKDFKR 284 (287)
Q Consensus 244 ~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~~ 284 (287)
......+-.++-+-+-..+...|+.+ .+..+....|.|...
T Consensus 325 i~LAqavvyLA~aPKSNavY~A~~~A~~d~~~~~~~~vP~HLrn 368 (436)
T COG2256 325 IALAQAVVYLALAPKSNAVYTAINAALADAKEGGSLEVPKHLRN 368 (436)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHHHhcCCCCCChhhcc
Confidence 33333333344444444555555444 333455555555543
No 489
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=49.33 E-value=36 Score=26.11 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
.++|..+++.-... ..+..+...+..++...|+.+.+.++++.+.+...
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~~a~ 163 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNSMAT 163 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHCHCE
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHHhhh
Confidence 34455555544322 34556666666667777777888888877755433
No 490
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=49.09 E-value=1.3e+02 Score=23.78 Aligned_cols=117 Identities=11% Similarity=0.084 Sum_probs=67.4
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 023133 36 YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115 (287)
Q Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (287)
-..++....+.++.....+.+..+.. ...-...+..+...|++..|++++.+..+.- .+..-++.+=..-.+
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l--~~l~~~~c~~~L~~~ 172 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL--EELKGYSCVRHLSSQ 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH--HhcccchHHHHHhHH
Confidence 34455666666666666666666643 2233345667778899999999987765431 111122222222222
Q ss_pred cCCHH-----HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 116 SRQIE-----KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 116 ~~~~~-----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
..++. .....|..+.. ..|...|..+..+|.-.|+.+.+.+-+..
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~---~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQ---DFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 12111 12223334433 57899999999999999987776644444
No 491
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.95 E-value=76 Score=20.94 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCC
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGLK 133 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~ 133 (287)
+++.+.+|...++|+++++-|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455566667777777777776665
No 492
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=48.73 E-value=1.3e+02 Score=23.46 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCc-----chHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 213 ALIDSFGRTGNIEESLRLFNDMKQQQ-IRP-----SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 213 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
.|+.-|.+.|+++.|-.++--+...+ ... +...-..++......|+|+-+.++.+-+....|.+..+
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~~l 256 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEGNTL 256 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccCcC
Confidence 35566666777777766555444221 122 33444556777788899999999999998887766543
No 493
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.40 E-value=1.7e+02 Score=24.68 Aligned_cols=59 Identities=14% Similarity=0.097 Sum_probs=25.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHh--cCCCCH-HHHHHHHHHHhccCChHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVS--SRTLSS-DCYTNFARAFIMTDDCTQLLIFIEEV 94 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (287)
+.--|++.+.-.|+.....+.++.|... |-.|.. .|| -+.-+|.-.+++.+|.+.|-..
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY-~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTY-QVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEee-ehhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555545555544332 112211 121 2333444445555555555443
No 494
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.34 E-value=74 Score=20.62 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 023133 108 RIIFAFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~ 129 (287)
.++.-|...++.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666554
No 495
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=48.30 E-value=1.5e+02 Score=24.17 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhcCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 023133 119 IEKALLIFDHIKGLKCKPDLI----TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR 184 (287)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 184 (287)
.+++..++..+.+. .|+.. -|-++.......|.+++++.+|++....|..|-...-..++..+-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 45677777777665 46654 467778888888888888888888888888876666666665544
No 496
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.72 E-value=1.9e+02 Score=25.07 Aligned_cols=270 Identities=17% Similarity=0.093 Sum_probs=133.5
Q ss_pred hcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHH--HHHHHHHHHhcCCCC-----------HHHHHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLS--FQILKDLLVSSRTLS-----------SDCYTNFAR 76 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~~-----------~~~~~~l~~ 76 (287)
..+.++...+++..+...|.... ..++.-...|.+.|..... ++-++.+...-..|+ ...+.....
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aV 108 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAV 108 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhe
Confidence 35788999999999988887666 5688888888888875543 222333322111111 112222233
Q ss_pred HHhccCChHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHhcCCHHHHHHHHH---HHhcC------C----------
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASP----ESIIVVNRIIFAFAKSRQIEKALLIFD---HIKGL------K---------- 133 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~------~---------- 133 (287)
.+.....+..|+++...+...--+ .-..+.......+....+.++|+.++. ++... |
T Consensus 109 i~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~k 188 (696)
T KOG2471|consen 109 IFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLK 188 (696)
T ss_pred eeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhcc
Confidence 344455666666665554432100 011122223344556666677766543 33321 1
Q ss_pred -CCCCHhhHHHH------------HHHHHhcCCHHHHHHHHHH-HHHcCCCCChhHHHHH-HHHHHhcCchHHHHHHHHH
Q 023133 134 -CKPDLITYNIV------------LDILGRVGRVNDMLNEFAS-MKEAGVVPDFISYNTL-LNNLRKIRRLDLCLIYFRE 198 (287)
Q Consensus 134 -~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 198 (287)
.+|....-..+ +.+|.+..+...+.+-.+. |...+ |...+..+ -..+.-.|++.+|.+++..
T Consensus 189 t~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~---~s~~~l~LKsq~eY~~gn~~kA~KlL~~ 265 (696)
T KOG2471|consen 189 TLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ---DSSMALLLKSQLEYAHGNHPKAMKLLLV 265 (696)
T ss_pred cCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC---CCcHHHHHHHHHHHHhcchHHHHHHHHh
Confidence 11111111111 1122222222222211111 11111 21112111 1234457888888887755
Q ss_pred Hh---hCCCcCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCcch-----------HhHHHHHHH
Q 023133 199 MG---ESGIKPDL-----LTYTALIDSFGRTGNIEESLRLFNDMKQ-------QQIRPSI-----------YVYRSLIDN 252 (287)
Q Consensus 199 ~~---~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~-----------~~~~~li~~ 252 (287)
.- ..|...+. ..+|.|.-.+.+.|.+..+..+|.+..+ .|++|.. .+|+ ..-.
T Consensus 266 sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~~ 344 (696)
T KOG2471|consen 266 SNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGLL 344 (696)
T ss_pred cccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhHH
Confidence 32 22222221 1235555555666777777777766653 3555431 2233 2334
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCChhhHhhhc
Q 023133 253 LKKMGKVDLAMTIFEEMNSSLSDLAGPKDFKRKA 286 (287)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
+...|++-.|.+.|.+....+.. .|+-|+|.|
T Consensus 345 ~Lh~grPl~AfqCf~~av~vfh~--nPrlWLRlA 376 (696)
T KOG2471|consen 345 YLHSGRPLLAFQCFQKAVHVFHR--NPRLWLRLA 376 (696)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhc--CcHHHHHHH
Confidence 67889999999999988877754 456777754
No 497
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=47.38 E-value=77 Score=20.57 Aligned_cols=59 Identities=19% Similarity=0.186 Sum_probs=31.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC--ChhHHHHHHHHHHHhc
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN--DIDLSFQILKDLLVSS 63 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~ 63 (287)
.++.-|...|++++|..-+.++.... ..+..-..++..+...+ .-+....++..+.+.+
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~-~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPE-QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 45666777788888888777765442 22234444444444442 2333344455554443
No 498
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.89 E-value=69 Score=19.61 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=19.5
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhc
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVSS 63 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 63 (287)
.++..+.++.--++|+++++-|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 35566667777888888888888776
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.26 E-value=75 Score=19.80 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
++|+-....|+..|..+|..+++...-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555666666666666666665555555566666666664
No 500
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=44.82 E-value=1.4e+02 Score=23.85 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHH--HHhcCChHHHHHHHHHHhh
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDN--LKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~ 271 (287)
+..+...+.++.|+..++......-.|-...+..|..+ |...|..+.|..++..+.+
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~ 278 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQ 278 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Done!