Query 023133
Match_columns 287
No_of_seqs 491 out of 1305
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 16:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 5.1E-37 1.7E-41 253.8 25.2 211 19-255 10-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 5.8E-37 2E-41 253.4 25.1 184 2-185 29-222 (501)
3 2xpi_A Anaphase-promoting comp 100.0 4.3E-30 1.5E-34 219.0 33.1 274 2-280 308-587 (597)
4 2xpi_A Anaphase-promoting comp 100.0 7.9E-29 2.7E-33 211.2 32.0 239 34-277 306-550 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.8E-25 9.6E-30 179.7 33.0 271 2-277 70-373 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-25 1.6E-29 178.5 32.5 268 2-275 36-337 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.1E-24 2.1E-28 175.0 30.3 271 3-279 30-365 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 9.6E-24 3.3E-28 173.8 30.8 257 15-277 8-291 (450)
9 3hym_B Cell division cycle pro 99.9 3.1E-23 1.1E-27 163.7 30.4 273 2-279 25-306 (330)
10 3ieg_A DNAJ homolog subfamily 99.9 2.2E-21 7.6E-26 154.7 33.0 270 4-280 42-343 (359)
11 3ieg_A DNAJ homolog subfamily 99.9 7E-21 2.4E-25 151.8 32.8 269 2-277 6-306 (359)
12 4eqf_A PEX5-related protein; a 99.9 2.2E-22 7.6E-27 161.3 24.2 263 2-269 68-353 (365)
13 3cv0_A Peroxisome targeting si 99.9 1.4E-22 4.9E-27 159.7 22.6 268 2-274 24-317 (327)
14 3mkr_A Coatomer subunit epsilo 99.9 1.2E-21 3.9E-26 152.0 26.2 265 6-284 6-276 (291)
15 1fch_A Peroxisomal targeting s 99.9 1.2E-21 3.9E-26 157.2 26.3 262 3-268 68-355 (368)
16 1fch_A Peroxisomal targeting s 99.9 6.2E-21 2.1E-25 152.9 25.5 264 8-276 34-318 (368)
17 4eqf_A PEX5-related protein; a 99.9 2.4E-21 8.2E-26 155.3 21.6 239 34-278 66-316 (365)
18 2gw1_A Mitochondrial precursor 99.9 3.8E-20 1.3E-24 154.7 28.5 268 3-276 10-371 (514)
19 2gw1_A Mitochondrial precursor 99.9 1.4E-20 4.6E-25 157.5 25.6 272 2-278 42-407 (514)
20 3hym_B Cell division cycle pro 99.9 1.1E-19 3.7E-24 143.4 28.7 253 2-259 59-321 (330)
21 3fp2_A TPR repeat-containing p 99.9 6.8E-20 2.3E-24 154.1 27.2 267 2-275 28-410 (537)
22 3spa_A Mtrpol, DNA-directed RN 99.9 2.2E-22 7.5E-27 172.7 11.8 152 101-257 125-286 (1134)
23 3spa_A Mtrpol, DNA-directed RN 99.9 3E-21 1E-25 165.8 14.8 119 137-255 126-248 (1134)
24 3uq3_A Heat shock protein STI1 99.9 2.3E-19 8E-24 136.5 22.6 226 34-273 6-237 (258)
25 3cv0_A Peroxisome targeting si 99.9 7.3E-19 2.5E-23 138.4 25.8 236 34-275 22-272 (327)
26 3fp2_A TPR repeat-containing p 99.9 1.7E-18 5.8E-23 145.6 29.4 261 13-279 216-498 (537)
27 3uq3_A Heat shock protein STI1 99.8 5E-18 1.7E-22 129.1 25.4 223 2-237 8-236 (258)
28 2pl2_A Hypothetical conserved 99.8 1.7E-18 6E-23 128.5 20.8 196 68-269 5-211 (217)
29 2ho1_A Type 4 fimbrial biogene 99.8 8.5E-18 2.9E-22 127.6 24.8 212 68-283 37-249 (252)
30 3mkr_A Coatomer subunit epsilo 99.8 9.4E-18 3.2E-22 130.0 24.4 243 4-265 39-287 (291)
31 2vq2_A PILW, putative fimbrial 99.8 2.3E-17 7.8E-22 122.8 24.7 212 69-283 9-222 (225)
32 3u4t_A TPR repeat-containing p 99.8 3.9E-17 1.3E-21 125.3 26.6 229 5-236 9-249 (272)
33 1xnf_A Lipoprotein NLPI; TPR, 99.8 7.3E-18 2.5E-22 129.5 22.4 247 10-266 16-269 (275)
34 3u4t_A TPR repeat-containing p 99.8 1.5E-17 5.1E-22 127.6 23.7 245 34-282 4-260 (272)
35 1b89_A Protein (clathrin heavy 99.8 1E-19 3.5E-24 145.0 11.5 227 10-276 14-240 (449)
36 2pl2_A Hypothetical conserved 99.8 1.5E-17 5.3E-22 123.4 21.5 196 34-235 6-212 (217)
37 1ouv_A Conserved hypothetical 99.8 5E-16 1.7E-20 119.3 30.6 224 34-275 7-254 (273)
38 2q7f_A YRRB protein; TPR, prot 99.8 1.1E-17 3.9E-22 126.0 19.7 203 70-277 25-227 (243)
39 2ho1_A Type 4 fimbrial biogene 99.8 3.2E-16 1.1E-20 118.8 27.2 200 34-237 38-238 (252)
40 2h6f_A Protein farnesyltransfe 99.8 1.1E-16 3.6E-21 128.3 25.3 244 2-253 100-363 (382)
41 2h6f_A Protein farnesyltransfe 99.8 5.6E-17 1.9E-21 129.9 22.5 237 34-277 98-353 (382)
42 4a1s_A PINS, partner of inscut 99.8 2.7E-17 9.2E-22 133.8 21.0 271 4-274 53-374 (411)
43 2q7f_A YRRB protein; TPR, prot 99.8 3.5E-17 1.2E-21 123.3 20.1 199 34-237 24-222 (243)
44 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.1E-17 1E-21 126.0 19.7 230 43-278 15-250 (275)
45 2vq2_A PILW, putative fimbrial 99.8 3.1E-16 1.1E-20 116.6 24.1 209 34-247 9-219 (225)
46 1b89_A Protein (clathrin heavy 99.8 1.1E-17 3.6E-22 133.5 16.5 245 1-282 34-318 (449)
47 1ouv_A Conserved hypothetical 99.8 2E-15 6.7E-20 116.0 28.8 220 2-238 9-252 (273)
48 3ro2_A PINS homolog, G-protein 99.8 7.2E-17 2.5E-21 127.2 18.9 272 4-275 10-335 (338)
49 2ond_A Cleavage stimulation fa 99.8 8.8E-15 3E-19 114.4 29.6 224 50-278 33-276 (308)
50 3sf4_A G-protein-signaling mod 99.8 1.6E-16 5.4E-21 128.8 20.1 272 3-274 13-338 (406)
51 4g1t_A Interferon-induced prot 99.7 9.3E-16 3.2E-20 127.0 23.3 268 12-283 151-470 (472)
52 2xm6_A Protein corresponding t 99.7 1.3E-13 4.6E-18 114.7 34.9 248 5-272 45-325 (490)
53 4g1t_A Interferon-induced prot 99.7 7.4E-15 2.5E-19 121.6 26.6 274 1-277 53-406 (472)
54 2ond_A Cleavage stimulation fa 99.7 2.5E-14 8.6E-19 111.8 28.1 219 16-237 33-270 (308)
55 3vtx_A MAMA; tetratricopeptide 99.7 4.3E-15 1.5E-19 107.1 21.3 170 102-275 4-173 (184)
56 2xm6_A Protein corresponding t 99.7 3E-13 1E-17 112.6 34.6 248 5-272 81-396 (490)
57 4abn_A Tetratricopeptide repea 99.7 2.6E-15 8.9E-20 124.3 21.8 213 49-268 84-317 (474)
58 3nf1_A KLC 1, kinesin light ch 99.7 2.1E-16 7.3E-21 123.4 14.0 241 34-275 28-310 (311)
59 3vtx_A MAMA; tetratricopeptide 99.7 1.4E-14 4.8E-19 104.4 22.3 167 67-237 4-170 (184)
60 4abn_A Tetratricopeptide repea 99.7 4.7E-15 1.6E-19 122.7 20.1 215 15-234 84-318 (474)
61 3nf1_A KLC 1, kinesin light ch 99.7 3.9E-16 1.3E-20 121.9 12.4 234 2-236 30-306 (311)
62 2ooe_A Cleavage stimulation fa 99.7 3.5E-13 1.2E-17 113.3 30.5 153 121-277 304-459 (530)
63 1hz4_A MALT regulatory protein 99.7 1.1E-13 3.6E-18 111.2 26.0 270 5-274 20-324 (373)
64 3as5_A MAMA; tetratricopeptide 99.7 2.8E-14 9.6E-19 102.6 19.7 174 103-280 8-181 (186)
65 3ulq_A Response regulator aspa 99.6 6.9E-14 2.4E-18 112.7 20.5 233 39-274 109-370 (383)
66 4a1s_A PINS, partner of inscut 99.6 4E-14 1.4E-18 115.0 18.4 241 34-275 49-335 (411)
67 4i17_A Hypothetical protein; T 99.6 1.1E-13 3.9E-18 103.2 19.1 206 66-283 5-220 (228)
68 3ulq_A Response regulator aspa 99.6 1.7E-13 5.9E-18 110.4 21.3 229 5-236 109-367 (383)
69 3sf4_A G-protein-signaling mod 99.6 3.2E-14 1.1E-18 115.1 16.8 258 2-259 50-363 (406)
70 3mv2_B Coatomer subunit epsilo 99.6 7.3E-13 2.5E-17 101.4 23.0 255 6-284 20-294 (310)
71 3as5_A MAMA; tetratricopeptide 99.6 2.2E-13 7.6E-18 97.8 19.3 164 34-201 9-172 (186)
72 1xi4_A Clathrin heavy chain; a 99.6 2E-12 6.9E-17 115.3 27.8 210 34-278 1106-1315(1630)
73 2ooe_A Cleavage stimulation fa 99.6 1.3E-12 4.3E-17 109.9 25.4 220 51-275 256-495 (530)
74 3ro2_A PINS homolog, G-protein 99.6 5.9E-14 2E-18 110.4 15.7 240 35-275 7-295 (338)
75 4gyw_A UDP-N-acetylglucosamine 99.6 1.1E-13 3.7E-18 119.4 18.3 163 69-235 10-172 (723)
76 4gyw_A UDP-N-acetylglucosamine 99.6 3.2E-13 1.1E-17 116.5 20.8 164 34-201 10-173 (723)
77 3edt_B KLC 2, kinesin light ch 99.6 1.5E-13 5E-18 105.6 16.5 157 10-166 12-197 (283)
78 3q15_A PSP28, response regulat 99.6 1.3E-12 4.4E-17 105.1 22.5 234 34-271 102-364 (378)
79 3edt_B KLC 2, kinesin light ch 99.6 2.5E-13 8.6E-18 104.2 16.8 228 44-272 12-281 (283)
80 4i17_A Hypothetical protein; T 99.6 2.9E-12 1E-16 95.5 21.6 192 34-237 8-209 (228)
81 3q15_A PSP28, response regulat 99.5 1.6E-12 5.4E-17 104.6 21.2 228 5-236 107-364 (378)
82 1qqe_A Vesicular transport pro 99.5 9.1E-13 3.1E-17 102.2 18.1 237 17-274 3-271 (292)
83 1xi4_A Clathrin heavy chain; a 99.5 2.9E-11 1E-15 108.1 27.3 234 1-269 1107-1342(1630)
84 3e4b_A ALGK; tetratricopeptide 99.5 3.1E-11 1.1E-15 99.3 26.1 191 67-273 175-388 (452)
85 3e4b_A ALGK; tetratricopeptide 99.5 3E-11 1E-15 99.4 25.3 157 103-272 176-351 (452)
86 1hz4_A MALT regulatory protein 99.5 5.6E-11 1.9E-15 95.3 24.8 240 35-274 16-284 (373)
87 3qky_A Outer membrane assembly 99.5 1.4E-11 4.8E-16 93.8 19.0 192 67-278 14-230 (261)
88 2fo7_A Synthetic consensus TPR 99.5 1.5E-11 5.2E-16 83.2 17.2 132 141-275 4-135 (136)
89 1qqe_A Vesicular transport pro 99.4 3.5E-11 1.2E-15 93.2 20.4 212 14-243 32-273 (292)
90 3qky_A Outer membrane assembly 99.4 3E-11 1E-15 92.0 18.3 189 34-227 16-251 (261)
91 2fo7_A Synthetic consensus TPR 99.4 2.7E-11 9.1E-16 81.9 16.1 130 35-167 3-132 (136)
92 3urz_A Uncharacterized protein 99.4 1.7E-11 5.8E-16 90.0 15.6 163 69-236 5-185 (208)
93 3urz_A Uncharacterized protein 99.4 6.1E-11 2.1E-15 87.1 18.5 170 36-212 7-194 (208)
94 2pzi_A Probable serine/threoni 99.4 2.7E-11 9.1E-16 104.7 19.1 173 79-258 402-583 (681)
95 2pzi_A Probable serine/threoni 99.4 1.7E-11 5.9E-16 105.9 17.2 174 10-188 402-583 (681)
96 2yhc_A BAMD, UPF0169 lipoprote 99.4 2E-10 6.7E-15 85.4 19.7 190 67-279 3-220 (225)
97 3mv2_B Coatomer subunit epsilo 99.4 4.1E-10 1.4E-14 86.3 21.0 184 52-244 85-287 (310)
98 3dra_A Protein farnesyltransfe 99.4 3.2E-09 1.1E-13 82.0 26.3 216 16-235 50-285 (306)
99 2vsy_A XCC0866; transferase, g 99.4 7.4E-11 2.5E-15 100.0 18.5 154 81-238 2-158 (568)
100 2yhc_A BAMD, UPF0169 lipoprote 99.3 2.1E-10 7E-15 85.3 18.6 181 4-203 9-214 (225)
101 3qou_A Protein YBBN; thioredox 99.3 1.3E-10 4.5E-15 89.7 17.7 169 99-271 113-283 (287)
102 3dra_A Protein farnesyltransfe 99.3 1.8E-09 6.3E-14 83.4 23.9 228 44-276 43-292 (306)
103 2r5s_A Uncharacterized protein 99.3 3.3E-11 1.1E-15 86.0 13.2 162 35-200 8-171 (176)
104 4ga2_A E3 SUMO-protein ligase 99.3 1.4E-11 4.7E-16 85.5 9.9 122 8-131 6-128 (150)
105 3qou_A Protein YBBN; thioredox 99.3 1.5E-10 5.2E-15 89.3 16.8 169 64-236 113-283 (287)
106 2ifu_A Gamma-SNAP; membrane fu 99.3 1.9E-10 6.4E-15 89.8 17.3 224 11-265 3-254 (307)
107 4e6h_A MRNA 3'-END-processing 99.3 1.7E-09 5.7E-14 92.6 24.2 233 50-285 326-583 (679)
108 2vsy_A XCC0866; transferase, g 99.3 1.2E-10 4.2E-15 98.7 17.3 156 12-170 2-160 (568)
109 2r5s_A Uncharacterized protein 99.3 5.6E-11 1.9E-15 84.8 13.0 160 108-271 11-172 (176)
110 3rjv_A Putative SEL1 repeat pr 99.3 2.2E-09 7.5E-14 78.9 21.7 174 87-272 5-197 (212)
111 4ga2_A E3 SUMO-protein ligase 99.3 3.4E-11 1.2E-15 83.5 11.2 57 109-166 37-93 (150)
112 3rjv_A Putative SEL1 repeat pr 99.3 1.5E-09 5.2E-14 79.8 20.2 162 68-238 18-198 (212)
113 2ifu_A Gamma-SNAP; membrane fu 99.3 2.4E-10 8.3E-15 89.1 15.1 191 35-230 38-254 (307)
114 3u3w_A Transcriptional activat 99.2 3E-08 1E-12 76.7 25.4 209 55-272 33-266 (293)
115 2c2l_A CHIP, carboxy terminus 99.2 1.7E-10 5.7E-15 88.8 12.5 203 67-280 3-207 (281)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.4E-09 8.2E-14 78.6 16.7 148 103-269 6-169 (213)
117 1hh8_A P67PHOX, NCF-2, neutrop 99.2 5.5E-09 1.9E-13 76.7 18.3 128 36-168 9-151 (213)
118 3q7a_A Farnesyltransferase alp 99.2 7.9E-08 2.7E-12 75.2 25.0 167 50-221 71-255 (349)
119 2qfc_A PLCR protein; TPR, HTH, 99.2 3E-08 1E-12 76.7 22.3 169 103-271 75-265 (293)
120 2vgx_A Chaperone SYCD; alterna 99.1 2.7E-10 9.3E-15 78.7 8.9 97 138-236 21-117 (148)
121 4f3v_A ESX-1 secretion system 99.1 2.1E-09 7.1E-14 81.4 14.0 190 80-275 18-240 (282)
122 4e6h_A MRNA 3'-END-processing 99.1 4.6E-08 1.6E-12 83.8 23.8 233 16-253 326-584 (679)
123 4gco_A Protein STI-1; structur 99.1 2.7E-09 9.1E-14 71.5 12.8 102 175-278 15-116 (126)
124 3u3w_A Transcriptional activat 99.1 6.5E-09 2.2E-13 80.4 16.8 168 34-201 76-265 (293)
125 3q7a_A Farnesyltransferase alp 99.1 1.2E-07 4.1E-12 74.1 23.3 226 8-237 63-331 (349)
126 3gw4_A Uncharacterized protein 99.1 7.9E-09 2.7E-13 75.1 15.9 156 80-236 4-175 (203)
127 2e2e_A Formate-dependent nitri 99.1 1.9E-09 6.5E-14 76.8 12.2 120 11-132 22-144 (177)
128 1a17_A Serine/threonine protei 99.1 1E-08 3.4E-13 71.9 15.6 129 34-165 14-144 (166)
129 1a17_A Serine/threonine protei 99.1 1.4E-08 4.8E-13 71.2 16.1 125 71-198 16-142 (166)
130 4gco_A Protein STI-1; structur 99.1 6.9E-09 2.4E-13 69.5 13.5 109 34-145 14-122 (126)
131 2e2e_A Formate-dependent nitri 99.1 2E-09 6.9E-14 76.7 11.5 121 114-237 21-144 (177)
132 4f3v_A ESX-1 secretion system 99.1 6.8E-09 2.3E-13 78.6 14.7 49 11-59 18-73 (282)
133 3gw4_A Uncharacterized protein 99.1 3.6E-09 1.2E-13 76.9 12.6 153 10-164 3-173 (203)
134 1p5q_A FKBP52, FK506-binding p 99.0 5.4E-10 1.8E-14 88.3 8.5 130 69-200 148-292 (336)
135 3gyz_A Chaperone protein IPGC; 99.0 9.2E-09 3.2E-13 71.1 13.5 96 70-167 38-133 (151)
136 3gyz_A Chaperone protein IPGC; 99.0 4E-09 1.4E-13 72.9 11.3 96 140-237 38-133 (151)
137 2qfc_A PLCR protein; TPR, HTH, 99.0 9.8E-08 3.4E-12 73.8 20.4 168 69-236 76-265 (293)
138 1na0_A Designed protein CTPR3; 99.0 2.7E-08 9.3E-13 65.9 15.2 93 72-166 13-105 (125)
139 1na0_A Designed protein CTPR3; 99.0 2E-08 6.9E-13 66.5 14.5 115 34-151 10-124 (125)
140 2xcb_A PCRH, regulatory protei 99.0 6.1E-09 2.1E-13 71.3 11.7 96 139-236 19-114 (142)
141 2c2l_A CHIP, carboxy terminus 99.0 4E-09 1.4E-13 81.1 11.9 191 34-236 5-198 (281)
142 2vyi_A SGTA protein; chaperone 99.0 1.8E-08 6.1E-13 67.4 13.5 92 73-166 17-108 (131)
143 2lni_A Stress-induced-phosphop 99.0 2.8E-08 9.5E-13 66.7 14.2 61 104-165 17-77 (133)
144 2lni_A Stress-induced-phosphop 99.0 2.9E-08 1E-12 66.6 14.1 116 34-152 17-132 (133)
145 3dss_A Geranylgeranyl transfer 99.0 1.1E-06 3.9E-11 68.3 24.4 223 45-276 41-308 (331)
146 2vyi_A SGTA protein; chaperone 99.0 2.5E-08 8.6E-13 66.6 13.4 118 34-154 13-130 (131)
147 2vgx_A Chaperone SYCD; alterna 99.0 5.4E-09 1.8E-13 72.2 10.0 96 34-131 22-117 (148)
148 2kck_A TPR repeat; tetratricop 98.9 3E-08 1E-12 64.3 12.4 104 172-277 5-111 (112)
149 2fbn_A 70 kDa peptidylprolyl i 98.9 2E-09 6.9E-14 78.2 7.2 129 70-200 40-184 (198)
150 1p5q_A FKBP52, FK506-binding p 98.9 6.2E-08 2.1E-12 76.4 16.0 151 81-236 126-293 (336)
151 3dss_A Geranylgeranyl transfer 98.9 5.7E-06 1.9E-10 64.4 26.4 223 8-237 38-304 (331)
152 3upv_A Heat shock protein STI1 98.9 1.8E-08 6.1E-13 67.3 10.9 95 140-236 6-100 (126)
153 1elw_A TPR1-domain of HOP; HOP 98.9 6.6E-08 2.2E-12 63.3 12.5 99 175-275 6-104 (118)
154 3sz7_A HSC70 cochaperone (SGT) 98.9 5.6E-08 1.9E-12 68.2 12.1 99 137-237 10-108 (164)
155 3upv_A Heat shock protein STI1 98.9 1.7E-07 5.9E-12 62.4 14.1 95 70-166 6-100 (126)
156 2xcb_A PCRH, regulatory protei 98.9 3E-08 1E-12 67.8 10.4 96 34-131 19-114 (142)
157 1elw_A TPR1-domain of HOP; HOP 98.9 2.4E-07 8.3E-12 60.5 14.5 22 39-60 10-31 (118)
158 4b4t_Q 26S proteasome regulato 98.8 1.1E-06 3.8E-11 71.6 21.3 196 6-201 11-244 (434)
159 3q49_B STIP1 homology and U bo 98.8 5.9E-08 2E-12 65.7 11.7 99 136-236 7-105 (137)
160 2fbn_A 70 kDa peptidylprolyl i 98.8 1.2E-07 4.3E-12 68.6 13.9 96 69-166 89-185 (198)
161 4gcn_A Protein STI-1; structur 98.8 8.4E-08 2.9E-12 64.2 11.4 101 174-275 9-115 (127)
162 1hxi_A PEX5, peroxisome target 98.8 7E-08 2.4E-12 64.0 10.8 99 176-276 20-118 (121)
163 2kck_A TPR repeat; tetratricop 98.8 1.1E-07 3.6E-12 61.7 11.6 26 105-130 42-67 (112)
164 2dba_A Smooth muscle cell asso 98.8 2.2E-07 7.5E-12 63.6 13.4 99 175-276 30-132 (148)
165 4gcn_A Protein STI-1; structur 98.8 2.1E-07 7E-12 62.3 12.9 105 35-142 10-120 (127)
166 3q49_B STIP1 homology and U bo 98.8 3.9E-07 1.3E-11 61.5 13.4 96 68-165 9-104 (137)
167 3sz7_A HSC70 cochaperone (SGT) 98.8 3.9E-07 1.4E-11 63.8 13.7 94 71-166 14-107 (164)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 2.2E-08 7.4E-13 82.5 8.1 89 103-193 317-405 (457)
169 4b4t_Q 26S proteasome regulato 98.8 7.8E-07 2.7E-11 72.5 17.4 197 39-235 10-243 (434)
170 2dba_A Smooth muscle cell asso 98.8 8.8E-07 3E-11 60.5 15.2 96 103-201 28-127 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.7 2.6E-07 9E-12 61.6 12.1 55 74-129 10-64 (131)
172 1elr_A TPR2A-domain of HOP; HO 98.7 1.3E-07 4.3E-12 63.2 10.3 97 104-201 5-107 (131)
173 1hxi_A PEX5, peroxisome target 98.7 3.3E-07 1.1E-11 60.7 12.1 96 35-132 19-114 (121)
174 3k9i_A BH0479 protein; putativ 98.7 2E-08 6.7E-13 66.3 6.0 91 187-278 4-96 (117)
175 3ro3_A PINS homolog, G-protein 98.7 1.5E-07 5.3E-12 65.2 10.7 132 141-272 12-158 (164)
176 2xev_A YBGF; tetratricopeptide 98.7 1.4E-06 4.9E-11 58.0 15.1 92 38-131 7-104 (129)
177 1wao_1 Serine/threonine protei 98.7 4.4E-07 1.5E-11 75.1 14.2 118 42-162 15-134 (477)
178 1wao_1 Serine/threonine protei 98.7 7.6E-08 2.6E-12 79.6 9.7 117 148-267 16-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.7 4.5E-07 1.6E-11 60.5 11.6 93 143-237 7-105 (129)
180 2uy1_A Cleavage stimulation fa 98.7 5.6E-05 1.9E-09 62.7 26.1 205 52-271 198-412 (493)
181 3ro3_A PINS homolog, G-protein 98.6 3.9E-07 1.3E-11 63.2 10.6 133 34-166 10-157 (164)
182 3rkv_A Putative peptidylprolyl 98.6 2E-07 6.9E-12 65.2 9.1 99 138-237 11-126 (162)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 2E-06 6.9E-11 70.8 14.8 150 82-235 248-413 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.6 2.1E-06 7.3E-11 68.5 14.4 121 70-192 225-360 (370)
185 1ihg_A Cyclophilin 40; ppiase 98.6 1E-06 3.6E-11 70.3 12.2 89 68-158 273-361 (370)
186 2if4_A ATFKBP42; FKBP-like, al 98.5 4.2E-07 1.4E-11 71.7 9.6 154 103-278 179-334 (338)
187 3rkv_A Putative peptidylprolyl 98.5 3E-06 1E-10 59.1 12.8 98 34-132 12-126 (162)
188 2hr2_A Hypothetical protein; a 98.5 1.7E-06 5.7E-11 59.5 10.4 69 210-278 59-137 (159)
189 1dce_A Protein (RAB geranylger 98.5 2E-05 6.8E-10 66.5 19.1 174 83-261 44-244 (567)
190 3k9i_A BH0479 protein; putativ 98.5 3E-07 1E-11 60.4 6.5 26 35-60 29-54 (117)
191 2if4_A ATFKBP42; FKBP-like, al 98.5 1.2E-06 4.1E-11 69.1 10.8 96 105-202 232-328 (338)
192 3n71_A Histone lysine methyltr 98.5 1.9E-06 6.5E-11 71.1 12.1 123 45-167 321-464 (490)
193 1dce_A Protein (RAB geranylger 98.5 2.7E-05 9.3E-10 65.7 19.2 176 11-190 40-243 (567)
194 2uy1_A Cleavage stimulation fa 98.4 6.2E-05 2.1E-09 62.5 20.6 204 16-236 196-412 (493)
195 1klx_A Cysteine rich protein B 98.4 1.2E-05 4E-10 54.5 13.4 110 118-238 10-127 (138)
196 2hr2_A Hypothetical protein; a 98.4 1.1E-05 3.7E-10 55.4 12.4 94 35-129 13-128 (159)
197 1klx_A Cysteine rich protein B 98.4 2.7E-05 9.2E-10 52.7 14.4 112 151-273 8-127 (138)
198 3n71_A Histone lysine methyltr 98.3 3.5E-06 1.2E-10 69.5 10.6 125 78-202 319-464 (490)
199 2l6j_A TPR repeat-containing p 98.3 8.5E-07 2.9E-11 57.4 4.9 93 172-267 3-102 (111)
200 2kat_A Uncharacterized protein 98.2 6E-06 2.1E-10 53.8 8.0 80 156-237 3-82 (115)
201 2l6j_A TPR repeat-containing p 98.2 1.2E-06 4.2E-11 56.5 4.4 62 70-132 6-67 (111)
202 2kat_A Uncharacterized protein 98.2 2.1E-05 7E-10 51.2 9.9 80 17-97 3-82 (115)
203 1na3_A Designed protein CTPR2; 98.1 5E-05 1.7E-09 46.7 10.3 59 106-165 12-70 (91)
204 1na3_A Designed protein CTPR2; 98.1 4.5E-05 1.5E-09 47.0 9.8 62 70-132 11-72 (91)
205 1zu2_A Mitochondrial import re 98.1 2E-05 6.7E-10 54.0 8.2 55 84-141 62-127 (158)
206 1zu2_A Mitochondrial import re 98.0 2.2E-05 7.4E-10 53.8 7.6 98 80-181 14-132 (158)
207 3ma5_A Tetratricopeptide repea 98.0 2.7E-05 9.2E-10 49.3 7.2 64 172-236 6-69 (100)
208 3ma5_A Tetratricopeptide repea 97.9 0.00014 4.7E-09 46.0 8.8 59 70-129 9-67 (100)
209 3ly7_A Transcriptional activat 97.8 0.00047 1.6E-08 54.1 13.0 71 205-277 274-344 (372)
210 3ly7_A Transcriptional activat 97.8 0.0011 3.8E-08 52.1 14.9 71 172-246 276-346 (372)
211 1pc2_A Mitochondria fission pr 97.8 0.00025 8.6E-09 48.1 9.8 90 190-281 15-109 (152)
212 2kc7_A BFR218_protein; tetratr 97.8 3.9E-05 1.3E-09 48.3 5.7 89 179-278 6-96 (99)
213 3qww_A SET and MYND domain-con 97.7 8.8E-05 3E-09 60.3 6.9 87 185-271 310-410 (433)
214 3qwp_A SET and MYND domain-con 97.7 0.00018 6E-09 58.5 8.4 93 179-271 293-399 (429)
215 3qww_A SET and MYND domain-con 97.6 0.00033 1.1E-08 56.9 9.1 85 47-131 312-410 (433)
216 3bee_A Putative YFRE protein; 97.6 0.0014 4.9E-08 40.6 10.1 51 224-275 25-75 (93)
217 3qwp_A SET and MYND domain-con 97.6 0.00053 1.8E-08 55.7 10.2 86 45-130 299-398 (429)
218 2kc7_A BFR218_protein; tetratr 97.6 0.00046 1.6E-08 43.2 7.7 66 214-280 6-72 (99)
219 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00093 3.2E-08 42.5 9.0 65 172-236 4-74 (104)
220 3mkq_A Coatomer beta'-subunit; 97.5 0.0065 2.2E-07 53.6 17.2 154 42-234 608-762 (814)
221 3bee_A Putative YFRE protein; 97.4 0.0044 1.5E-07 38.4 10.7 66 66-132 4-72 (93)
222 1nzn_A CGI-135 protein, fissio 97.3 0.0022 7.5E-08 41.9 8.8 92 188-281 16-112 (126)
223 3mkq_A Coatomer beta'-subunit; 97.3 0.023 8E-07 50.1 17.7 128 77-237 608-736 (814)
224 1pc2_A Mitochondria fission pr 97.1 0.007 2.4E-07 41.0 9.6 83 15-98 14-101 (152)
225 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0051 1.8E-07 38.9 8.7 63 69-131 6-74 (104)
226 3u64_A Protein TP_0956; tetrat 96.9 0.079 2.7E-06 40.1 16.5 85 119-205 179-272 (301)
227 3mkq_B Coatomer subunit alpha; 96.9 0.054 1.8E-06 37.7 14.2 129 111-269 13-141 (177)
228 1wy6_A Hypothetical protein ST 96.8 0.054 1.9E-06 35.7 14.1 140 79-240 18-157 (172)
229 3u64_A Protein TP_0956; tetrat 96.8 0.02 6.8E-07 43.3 10.4 63 70-132 201-269 (301)
230 1wy6_A Hypothetical protein ST 96.7 0.062 2.1E-06 35.4 12.3 140 9-169 17-156 (172)
231 3mkq_B Coatomer subunit alpha; 96.7 0.085 2.9E-06 36.7 15.4 130 76-235 13-142 (177)
232 3o48_A Mitochondria fission 1 96.3 0.095 3.2E-06 34.4 10.3 78 205-282 37-117 (134)
233 4h7y_A Dual specificity protei 96.3 0.09 3.1E-06 35.4 10.2 19 149-167 105-123 (161)
234 4h7y_A Dual specificity protei 96.3 0.11 3.7E-06 35.0 10.5 54 187-241 74-127 (161)
235 4ady_A RPN2, 26S proteasome re 96.3 0.44 1.5E-05 42.5 17.2 257 8-270 383-656 (963)
236 4gns_B Protein CSD3, chitin bi 96.2 0.071 2.4E-06 46.3 12.0 125 5-130 254-398 (754)
237 1nzn_A CGI-135 protein, fissio 96.2 0.05 1.7E-06 35.5 8.5 67 66-132 33-103 (126)
238 4gns_B Protein CSD3, chitin bi 96.1 0.13 4.4E-06 44.8 13.0 128 37-165 252-398 (754)
239 1y8m_A FIS1; mitochondria, unk 95.8 0.23 7.7E-06 33.1 11.5 75 205-279 36-113 (144)
240 3lvg_A Clathrin heavy chain 1; 95.7 4.1E-05 1.4E-09 61.7 -9.2 242 1-263 56-324 (624)
241 2ff4_A Probable regulatory pro 95.3 0.42 1.5E-05 38.2 12.5 72 35-107 173-249 (388)
242 4fhn_B Nucleoporin NUP120; pro 95.1 1.6 5.6E-05 40.3 17.0 190 74-271 818-1049(1139)
243 4b4t_R RPN7, 26S proteasome re 95.0 0.56 1.9E-05 38.1 12.6 97 34-130 132-235 (429)
244 4ady_A RPN2, 26S proteasome re 95.0 1.9 6.4E-05 38.7 19.8 225 7-236 419-657 (963)
245 2ff4_A Probable regulatory pro 95.0 0.15 5.1E-06 40.8 9.0 73 176-249 174-251 (388)
246 4b4t_P 26S proteasome regulato 94.4 1.7 5.9E-05 35.4 17.4 190 46-236 29-246 (445)
247 4fhn_B Nucleoporin NUP120; pro 94.2 0.91 3.1E-05 42.0 13.1 22 37-58 846-867 (1139)
248 3lvg_A Clathrin heavy chain 1; 93.5 6.2E-05 2.1E-09 60.7 -13.0 201 34-255 55-275 (624)
249 1v54_E Cytochrome C oxidase po 93.5 0.79 2.7E-05 28.4 8.4 63 188-251 25-87 (109)
250 3ffl_A Anaphase-promoting comp 93.5 0.72 2.5E-05 31.6 8.4 114 5-131 26-150 (167)
251 3ffl_A Anaphase-promoting comp 93.1 1.4 4.9E-05 30.2 10.5 122 34-168 21-152 (167)
252 3o48_A Mitochondria fission 1 93.0 1.2 4.1E-05 29.2 10.0 68 65-132 37-107 (134)
253 4b4t_P 26S proteasome regulato 91.9 4.5 0.00015 33.0 19.6 262 12-274 29-326 (445)
254 2y69_E Cytochrome C oxidase su 91.7 1.9 6.4E-05 28.4 8.4 63 188-251 68-130 (152)
255 1qsa_A Protein (soluble lytic 91.6 5.9 0.0002 33.9 22.5 115 153-271 229-347 (618)
256 4b4t_R RPN7, 26S proteasome re 91.5 4.7 0.00016 32.6 14.2 98 70-167 133-237 (429)
257 1v54_E Cytochrome C oxidase po 91.4 1.6 5.6E-05 27.0 9.5 62 153-215 25-86 (109)
258 1y8m_A FIS1; mitochondria, unk 90.4 2.7 9.4E-05 28.0 11.0 47 86-132 60-106 (144)
259 2y69_E Cytochrome C oxidase su 89.3 3.3 0.00011 27.3 9.5 62 153-215 68-129 (152)
260 2uwj_G Type III export protein 89.1 2.7 9.1E-05 26.0 6.8 48 113-166 49-96 (115)
261 2p58_C Putative type III secre 88.8 2.9 9.8E-05 25.9 7.9 17 113-129 50-66 (116)
262 3lpz_A GET4 (YOR164C homolog); 88.4 7.5 0.00026 30.2 17.7 85 42-126 64-159 (336)
263 1zbp_A Hypothetical protein VP 87.9 4.4 0.00015 30.3 8.7 51 79-130 8-58 (273)
264 3txn_A 26S proteasome regulato 87.4 9.8 0.00034 30.4 21.4 57 108-164 104-165 (394)
265 4b4t_S RPN3, 26S proteasome re 87.1 2 6.9E-05 35.5 7.1 60 2-61 234-298 (523)
266 2uwj_G Type III export protein 85.8 4.5 0.00015 25.0 8.3 50 78-133 49-98 (115)
267 3esl_A Checkpoint serine/threo 85.3 4.7 0.00016 28.6 7.3 87 16-103 61-150 (202)
268 2p58_C Putative type III secre 85.2 4.9 0.00017 24.9 9.1 50 78-133 50-99 (116)
269 4a1g_A Mitotic checkpoint seri 85.1 3 0.0001 28.1 6.0 55 50-104 82-137 (152)
270 1wdy_A 2-5A-dependent ribonucl 84.5 3.3 0.00011 30.8 7.0 242 4-266 7-273 (285)
271 1wdy_A 2-5A-dependent ribonucl 84.4 4.1 0.00014 30.2 7.5 208 38-267 7-240 (285)
272 2wvi_A Mitotic checkpoint seri 83.2 3.7 0.00013 28.1 6.0 56 50-105 77-133 (164)
273 3txn_A 26S proteasome regulato 82.8 17 0.00057 29.1 25.0 226 4-234 24-281 (394)
274 2nsz_A Programmed cell death p 82.5 5.4 0.00018 26.0 6.4 24 3-26 11-34 (129)
275 1k1a_A B-cell lymphoma 3-encod 81.8 10 0.00035 27.3 8.6 20 7-26 14-33 (241)
276 2wpv_A GET4, UPF0363 protein Y 81.7 16 0.00054 28.1 17.2 64 207-270 133-215 (312)
277 3pvs_A Replication-associated 81.4 20 0.0007 29.2 15.1 100 185-284 267-374 (447)
278 2r9g_A AAA ATPase, central reg 80.4 13 0.00045 26.3 9.6 54 185-239 26-84 (204)
279 3esl_A Checkpoint serine/threo 79.8 14 0.00048 26.3 9.3 53 154-206 95-148 (202)
280 2ion_A PDCD4, programmed cell 79.6 4.1 0.00014 27.5 5.2 23 4-26 14-36 (152)
281 4aez_C MAD3, mitotic spindle c 78.8 5.9 0.0002 28.6 6.0 54 50-103 131-185 (223)
282 3bge_A Predicted ATPase; struc 78.6 15 0.00051 25.9 8.8 37 186-222 20-56 (201)
283 3ctd_A Putative ATPase, AAA fa 76.2 19 0.00064 25.8 8.3 33 187-219 49-81 (213)
284 3jxi_A Vanilloid receptor-rela 76.2 2.2 7.4E-05 31.5 3.4 28 40-67 9-36 (260)
285 1qsa_A Protein (soluble lytic 72.8 45 0.0015 28.6 23.3 152 117-272 228-410 (618)
286 1ug3_A EIF4GI, eukaryotic prot 72.7 32 0.0011 26.8 11.0 64 3-66 15-79 (339)
287 3ygs_P Procaspase 9; apoptosis 71.1 8.9 0.00031 23.5 4.7 62 21-87 26-87 (97)
288 2xig_A Ferric uptake regulatio 71.0 21 0.0007 23.9 7.4 45 27-71 20-64 (150)
289 3kea_A K1L; tropism, ANK repea 70.2 31 0.0011 25.7 9.7 204 39-269 34-244 (285)
290 2b7e_A PRE-mRNA processing pro 70.2 5.7 0.0002 21.7 3.2 31 16-46 3-35 (59)
291 2fe3_A Peroxide operon regulat 69.7 21 0.00073 23.6 7.2 37 81-117 34-70 (145)
292 1zbp_A Hypothetical protein VP 69.6 33 0.0011 25.7 14.8 53 148-201 7-59 (273)
293 1mzb_A Ferric uptake regulatio 69.5 20 0.00068 23.5 6.5 34 84-117 34-67 (136)
294 2w57_A Ferric uptake regulatio 69.4 22 0.00076 23.8 6.8 34 84-117 33-66 (150)
295 2d2s_A Exocyst complex compone 69.2 31 0.0011 25.2 11.6 89 38-129 23-117 (235)
296 3bu8_A Telomeric repeat-bindin 68.2 20 0.00069 25.7 6.3 23 75-97 121-143 (235)
297 3eiq_C Programmed cell death p 67.6 43 0.0015 26.3 13.0 74 175-249 219-294 (358)
298 2rfa_A Transient receptor pote 67.5 30 0.001 24.5 8.0 20 5-24 6-25 (232)
299 3eyy_A Putative iron uptake re 67.1 19 0.00066 23.9 6.1 33 85-117 34-66 (145)
300 3eu9_A Huntingtin-interacting 66.9 19 0.00067 25.6 6.7 49 215-267 181-231 (240)
301 1oai_A Nuclear RNA export fact 66.7 5.4 0.00018 21.9 2.7 25 12-36 33-57 (59)
302 2wpv_A GET4, UPF0363 protein Y 66.2 43 0.0015 25.8 20.3 168 34-235 34-215 (312)
303 4b4t_S RPN3, 26S proteasome re 65.7 31 0.0011 28.7 8.0 70 209-278 232-305 (523)
304 3jxi_A Vanilloid receptor-rela 65.4 4.4 0.00015 29.8 2.9 28 6-33 9-36 (260)
305 3lpz_A GET4 (YOR164C homolog); 65.0 47 0.0016 25.8 25.1 134 34-186 36-180 (336)
306 4a1g_A Mitotic checkpoint seri 63.0 32 0.0011 23.2 9.2 52 191-242 83-135 (152)
307 3t8k_A Uncharacterized protein 62.8 35 0.0012 23.6 9.2 63 110-172 42-108 (186)
308 3kae_A CDC27, possible protein 62.2 37 0.0012 23.6 8.0 60 140-205 34-94 (242)
309 2f6m_A Suppressor protein STP2 61.9 10 0.00034 21.3 3.1 44 36-80 5-48 (65)
310 1ug3_A EIF4GI, eukaryotic prot 61.8 54 0.0019 25.5 10.8 20 213-232 146-165 (339)
311 3hra_A Ankyrin repeat family p 61.1 21 0.00071 24.7 5.8 16 8-23 11-26 (201)
312 1k1a_A B-cell lymphoma 3-encod 61.0 42 0.0014 23.9 9.0 181 74-267 12-204 (241)
313 2fe3_A Peroxide operon regulat 60.9 33 0.0011 22.7 7.4 60 163-223 12-71 (145)
314 4aez_C MAD3, mitotic spindle c 60.3 18 0.00063 26.1 5.1 52 190-241 131-183 (223)
315 4ets_A Ferric uptake regulatio 59.7 38 0.0013 23.0 7.4 58 60-118 25-84 (162)
316 3cqc_A Nuclear pore complex pr 59.2 23 0.00078 26.6 5.8 25 3-27 38-62 (270)
317 3kae_A CDC27, possible protein 59.0 42 0.0014 23.3 9.0 82 79-166 44-142 (242)
318 2xig_A Ferric uptake regulatio 58.9 37 0.0013 22.6 7.6 60 163-223 17-76 (150)
319 3mwm_A ZUR, putative metal upt 58.7 16 0.00053 24.1 4.4 31 40-70 20-50 (139)
320 3eiq_C Programmed cell death p 58.5 65 0.0022 25.3 13.2 66 140-206 219-286 (358)
321 1mzb_A Ferric uptake regulatio 58.4 35 0.0012 22.2 6.4 59 164-223 9-68 (136)
322 2qx5_A Nucleoporin NIC96; mRNA 58.2 92 0.0032 26.9 15.5 42 4-45 157-198 (661)
323 3eyy_A Putative iron uptake re 57.8 34 0.0012 22.7 6.0 59 163-223 9-67 (145)
324 3hra_A Ankyrin repeat family p 57.7 29 0.001 23.9 6.1 15 228-242 158-172 (201)
325 2w57_A Ferric uptake regulatio 57.6 39 0.0013 22.5 6.5 60 163-223 7-67 (150)
326 3ljn_A Hypothetical protein; a 57.1 65 0.0022 24.9 9.4 90 5-99 23-112 (364)
327 2zu6_B Programmed cell death p 56.9 30 0.001 26.6 6.1 23 37-59 170-192 (307)
328 3aji_A 26S proteasome non-ATPa 56.6 28 0.00095 24.7 5.9 21 5-25 9-29 (231)
329 4ets_A Ferric uptake regulatio 56.1 44 0.0015 22.6 6.6 44 109-152 38-83 (162)
330 3l6a_A Eukaryotic translation 54.8 77 0.0026 25.0 9.6 63 70-133 14-78 (364)
331 2yru_A Steroid receptor RNA ac 54.4 39 0.0013 21.6 5.4 41 196-236 49-89 (118)
332 1bpo_A Protein (clathrin); cla 53.8 92 0.0031 25.6 11.0 119 141-269 364-482 (494)
333 2fu4_A Ferric uptake regulatio 52.4 32 0.0011 19.9 6.8 33 85-117 34-66 (83)
334 3l6a_A Eukaryotic translation 51.9 86 0.0029 24.7 12.7 64 3-66 16-81 (364)
335 2d2s_A Exocyst complex compone 51.4 68 0.0023 23.4 10.3 89 109-200 24-118 (235)
336 2ijq_A Hypothetical protein; s 51.2 55 0.0019 22.3 8.7 52 220-271 44-103 (161)
337 3b7b_A Euchromatic histone-lys 48.2 39 0.0013 24.0 5.6 54 215-272 181-236 (237)
338 2wvi_A Mitotic checkpoint seri 48.1 63 0.0022 22.1 8.9 52 192-243 79-131 (164)
339 2ion_A PDCD4, programmed cell 48.1 60 0.002 21.8 9.0 64 106-170 12-77 (152)
340 2rfa_A Transient receptor pote 48.0 70 0.0024 22.6 8.1 57 215-272 158-223 (232)
341 2o03_A Probable zinc uptake re 47.7 35 0.0012 22.0 4.7 44 39-82 16-59 (131)
342 2cos_A Serine/threonine protei 47.1 32 0.0011 18.3 3.4 36 229-269 11-48 (54)
343 3aji_A 26S proteasome non-ATPa 46.9 73 0.0025 22.4 8.1 19 40-58 10-28 (231)
344 2o03_A Probable zinc uptake re 46.3 42 0.0014 21.7 4.9 45 179-223 16-60 (131)
345 2r9g_A AAA ATPase, central reg 46.1 77 0.0026 22.5 9.5 17 82-98 28-44 (204)
346 3eu9_A Huntingtin-interacting 44.7 41 0.0014 23.8 5.3 209 6-236 13-235 (240)
347 3mwm_A ZUR, putative metal upt 44.6 40 0.0014 22.1 4.6 46 178-223 18-63 (139)
348 3pvs_A Replication-associated 43.9 1.3E+02 0.0044 24.5 13.7 55 150-204 267-326 (447)
349 1wgl_A TOLL-interacting protei 43.8 39 0.0013 18.4 4.1 13 152-164 37-49 (59)
350 4g8k_A 2-5A-dependent ribonucl 43.3 1.1E+02 0.0036 23.3 8.3 158 6-175 172-331 (337)
351 2dod_A Transcription elongatio 43.3 39 0.0013 19.9 3.9 35 15-49 16-51 (82)
352 1uzc_A Hypothetical protein FL 42.5 37 0.0013 19.4 3.6 35 14-48 13-48 (71)
353 2ijq_A Hypothetical protein; s 42.3 79 0.0027 21.5 8.6 52 115-166 44-103 (161)
354 3bu8_A Telomeric repeat-bindin 42.1 95 0.0032 22.4 8.1 49 84-132 88-143 (235)
355 2nsz_A Programmed cell death p 41.0 71 0.0024 20.6 10.1 64 106-170 10-75 (129)
356 1ixm_A SPO0B, protein (sporula 40.8 66 0.0023 22.6 5.5 71 188-269 14-84 (192)
357 4gq2_M Nucleoporin NUP120; bet 40.7 2.1E+02 0.0073 26.0 11.7 89 179-273 816-927 (950)
358 3lxu_X Tripeptidyl-peptidase 2 39.8 2.6E+02 0.0088 26.7 11.2 36 80-117 1296-1331(1354)
359 3bqo_A Telomeric repeat-bindin 39.5 80 0.0027 22.4 5.4 47 15-61 94-145 (211)
360 2f6m_A Suppressor protein STP2 39.0 51 0.0018 18.4 4.4 26 143-168 7-32 (65)
361 2crb_A Nuclear receptor bindin 39.0 61 0.0021 19.6 4.1 19 249-267 21-39 (97)
362 3lxu_X Tripeptidyl-peptidase 2 38.9 2.7E+02 0.0091 26.6 11.1 37 185-223 1296-1332(1354)
363 2yru_A Steroid receptor RNA ac 37.8 63 0.0021 20.6 4.5 40 162-201 50-89 (118)
364 2rg8_A Programmed cell death p 37.8 58 0.002 22.2 4.6 24 107-130 14-37 (165)
365 3ltm_A Alpha-REP4; protein eng 37.2 1E+02 0.0035 21.4 18.7 122 102-236 63-184 (211)
366 3bqo_A Telomeric repeat-bindin 37.1 45 0.0016 23.6 3.9 22 215-236 124-145 (211)
367 3mv2_A Coatomer subunit alpha; 36.8 1.5E+02 0.005 23.0 12.7 70 188-272 185-256 (325)
368 3twr_A Tankyrase-2; ankyrin re 36.7 83 0.0028 20.6 5.5 14 113-126 15-28 (165)
369 3f3f_C Nucleoporin NUP85; stru 36.7 76 0.0026 26.8 5.9 87 35-123 481-569 (570)
370 3kea_A K1L; tropism, ANK repea 36.3 1.3E+02 0.0044 22.3 9.8 203 5-233 34-243 (285)
371 2p1h_A APAF-1, apoptotic prote 36.2 48 0.0017 19.8 3.7 64 18-88 24-87 (94)
372 2cwy_A Hypothetical protein TT 35.8 73 0.0025 19.3 4.7 50 220-271 13-67 (94)
373 4gq2_M Nucleoporin NUP120; bet 35.4 2.6E+02 0.0089 25.5 12.4 49 174-222 898-950 (950)
374 2pnn_A Transient receptor pote 35.2 44 0.0015 24.5 4.2 22 42-63 19-40 (273)
375 3bge_A Predicted ATPase; struc 35.2 1.2E+02 0.0041 21.5 8.7 17 82-98 21-37 (201)
376 1n11_A Ankyrin; clathrin, BAND 34.6 1.7E+02 0.0058 23.2 8.4 51 5-56 17-67 (437)
377 1bd8_A P19INK4D CDK4/6 inhibit 34.2 54 0.0018 21.3 4.1 20 5-24 5-24 (156)
378 1g1e_B SIN3A; four-helix bundl 34.2 71 0.0024 19.1 4.1 12 225-236 11-22 (89)
379 1bpo_A Protein (clathrin); cla 34.0 2E+02 0.0068 23.7 10.1 64 34-98 362-425 (494)
380 2qfz_A TBC1 domain family memb 33.7 58 0.002 25.3 4.7 43 196-238 232-274 (345)
381 2qq8_A TBC1 domain family memb 33.1 59 0.002 25.2 4.6 40 163-202 218-257 (334)
382 3f3f_C Nucleoporin NUP85; stru 33.1 2.2E+02 0.0075 24.1 8.0 74 152-227 495-568 (570)
383 2rg8_A Programmed cell death p 33.0 1.1E+02 0.0036 20.9 5.4 23 4-26 15-37 (165)
384 2dzn_A Probable 26S proteasome 32.8 23 0.00078 25.1 2.2 21 5-25 5-25 (228)
385 3t5v_B Nuclear mRNA export pro 31.8 1.5E+02 0.0052 24.2 6.9 61 2-62 179-249 (455)
386 1b79_A DNAB helicase; hexamer, 29.3 1.1E+02 0.0038 19.3 6.9 22 263-284 93-114 (119)
387 3ltm_A Alpha-REP4; protein eng 29.2 1.4E+02 0.0049 20.6 16.2 155 101-272 31-185 (211)
388 2p22_A Suppressor protein STP2 28.8 1E+02 0.0035 21.3 4.6 50 139-189 112-161 (174)
389 3qil_A Clathrin heavy chain 1; 28.5 91 0.0031 20.1 4.0 51 176-229 35-85 (125)
390 2etb_A Transient receptor pote 28.4 91 0.0031 22.4 4.9 52 147-199 8-69 (256)
391 3ph0_C ASCG; type III secretio 28.1 77 0.0026 17.1 3.5 11 78-88 50-60 (61)
392 2p22_A Suppressor protein STP2 28.0 1E+02 0.0034 21.3 4.4 50 171-221 109-158 (174)
393 3t5v_B Nuclear mRNA export pro 27.7 1.8E+02 0.0061 23.8 6.6 61 176-236 179-248 (455)
394 1ixm_A SPO0B, protein (sporula 27.5 98 0.0034 21.7 4.6 24 143-166 37-60 (192)
395 3ctd_A Putative ATPase, AAA fa 27.3 1.7E+02 0.0059 20.9 8.6 18 82-99 49-66 (213)
396 3ljn_A Hypothetical protein; a 27.2 2.1E+02 0.0072 21.9 7.3 186 66-267 16-232 (364)
397 4f52_E Glomulin; cullin-ring E 26.9 2E+02 0.0069 24.5 7.0 34 25-58 18-53 (596)
398 3mkr_B Coatomer subunit alpha; 26.8 2.2E+02 0.0075 22.0 9.9 47 192-238 180-228 (320)
399 3gxv_A Replicative DNA helicas 26.1 96 0.0033 19.8 4.0 58 191-253 47-104 (123)
400 1q2z_A ATP-dependent DNA helic 25.9 55 0.0019 20.9 2.8 30 83-112 42-72 (120)
401 3qil_A Clathrin heavy chain 1; 25.8 78 0.0027 20.4 3.3 51 211-264 35-85 (125)
402 1zl8_A LIN-7; heterodimer, alp 25.4 81 0.0028 16.5 4.5 20 14-33 8-27 (53)
403 3t8k_A Uncharacterized protein 25.2 1.7E+02 0.0057 20.0 7.9 152 113-269 13-176 (186)
404 1wty_A Hypothetical protein TT 24.8 1.4E+02 0.0046 18.9 6.4 76 153-235 3-79 (119)
405 4fke_A Aminopeptidase N; zinc 24.7 3.9E+02 0.013 24.2 18.8 166 3-171 690-864 (909)
406 1s6c_A KV4 potassium channel-i 24.6 1.6E+02 0.0055 19.6 10.1 42 155-198 140-181 (183)
407 3ltj_A Alpharep-4; protein eng 24.6 1.7E+02 0.0058 20.0 19.1 92 136-236 88-179 (201)
408 3v30_A DNA-binding protein rfx 24.4 1.6E+02 0.0053 19.4 6.5 21 251-271 140-160 (172)
409 2jp7_A MRNA export factor MEX6 24.0 51 0.0017 17.8 2.0 23 12-36 32-54 (57)
410 1dvk_A PRP18; PRE-mRNA splicin 23.3 1.9E+02 0.0064 19.9 5.7 40 230-269 68-108 (173)
411 3ubw_A 14-3-3E, 14-3-3 protein 23.3 2.3E+02 0.008 21.1 11.6 59 36-94 34-93 (261)
412 3crd_A Raidd; caspase recruitm 22.6 1.4E+02 0.0047 18.1 4.9 52 21-79 26-77 (100)
413 3v31_A Ankyrin repeat family A 22.1 1.7E+02 0.0059 19.1 9.2 21 251-271 140-160 (167)
414 2ko4_A Mediator of RNA polymer 22.0 1.1E+02 0.0037 17.9 3.1 32 133-164 31-62 (81)
415 2w2u_A Hypothetical P60 katani 21.9 1.3E+02 0.0045 17.6 5.9 17 219-235 30-46 (83)
416 2dzn_A Probable 26S proteasome 21.7 1.7E+02 0.0057 20.3 5.1 173 75-268 6-196 (228)
417 2qfz_A TBC1 domain family memb 21.7 2.8E+02 0.0096 21.4 7.7 78 89-166 230-314 (345)
418 2rpa_A Katanin P60 ATPase-cont 21.6 1E+02 0.0035 17.9 3.1 21 249-269 18-38 (78)
419 2keb_A DNA polymerase subunit 21.1 1.5E+02 0.0053 18.1 6.7 31 52-82 28-58 (101)
420 2qq8_A TBC1 domain family memb 21.1 1.4E+02 0.0048 23.0 4.8 111 48-164 169-292 (334)
421 1ich_A TNF-1, tumor necrosis f 21.0 1.3E+02 0.0045 19.0 3.7 30 245-274 74-103 (112)
422 1oyz_A Hypothetical protein YI 21.0 2.5E+02 0.0084 20.5 22.6 218 35-275 39-266 (280)
423 1n3k_A Astrocytic phosphoprote 20.0 1.7E+02 0.0058 19.0 4.2 40 50-90 40-79 (130)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.1e-37 Score=253.77 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=109.9
Q ss_pred HHHHHHHhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 023133 19 VRLLQSLRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQ 96 (287)
Q Consensus 19 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (287)
..+.+.+.+.+.... ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+....+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 334444444443322 345555666666666666666666666666666666666666665544331100
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH
Q 023133 97 IASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY 176 (287)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 176 (287)
.+.+.+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 011224555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh
Q 023133 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 177 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (287)
+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555555555555555555555555555555555555555555543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=5.8e-37 Score=253.43 Aligned_cols=184 Identities=15% Similarity=0.248 Sum_probs=143.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCC---------hhHHHHHHHHHHHhcCCCCHHHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETND---------IDLSFQILKDLLVSSRTLSSDCY 71 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 71 (287)
++.+|++|++.|++++|.++|++|.+.|+.|+ .+|+.||.+|++.+. +++|.++|++|...|+.||..||
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 67889999999999999999999999999999 999999999988765 45677777777777777777777
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 023133 72 TNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151 (287)
Q Consensus 72 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (287)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 023133 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK 185 (287)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (287)
|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777766654
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-30 Score=219.04 Aligned_cols=274 Identities=10% Similarity=0.027 Sum_probs=246.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
|+.++..|.+.|++++|.++|+++.+.++....++..++.++.+.|++++|..+++++.+. .+.+..++..++..|.+.
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHh
Confidence 6789999999999999999999999887655589999999999999999999999999865 355788999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 161 (287)
|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998875 5678899999999999999999999999998775 457889999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES----GIKPD--LLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.
T Consensus 465 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999887543 7889999999999999999999999999865 66777 7899999999999999999999999998
Q ss_pred hCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChh
Q 023133 236 QQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 236 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (287)
+.+ +.+..+|..+..+|.+.|++++|.++|+++.+..|+++...
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 764 45789999999999999999999999999999999876543
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7.9e-29 Score=211.24 Aligned_cols=239 Identities=11% Similarity=0.060 Sum_probs=201.9
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
.+++.++.++.+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 567777777777888888888888877654 3356677777777888888888888888777654 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999987753 34677999999999999999999999999988753 37889999999999999999999
Q ss_pred HHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcc--hHhHHHHHHHHHhcCChHHHHHHHH
Q 023133 194 IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ----QIRPS--IYVYRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~ 267 (287)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998764 457889999999999999999999999999865 66777 7899999999999999999999999
Q ss_pred HHhhcCCCCC
Q 023133 268 EMNSSLSDLA 277 (287)
Q Consensus 268 ~~~~~~~~~~ 277 (287)
++.+..|+.+
T Consensus 541 ~~~~~~p~~~ 550 (597)
T 2xpi_A 541 QGLLLSTNDA 550 (597)
T ss_dssp HHHHHSSCCH
T ss_pred HHHHhCCCCh
Confidence 9988877654
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.8e-25 Score=179.70 Aligned_cols=271 Identities=13% Similarity=0.094 Sum_probs=180.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
|..+...|.+.|++++|+..|+++...++....+|..+..++.+.|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 70 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Confidence 45666677777777777777777666554333566666666666666666666666666542 12233444555555556
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC----------------------------
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK---------------------------- 133 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 133 (287)
|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|+++.+.+
T Consensus 149 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666665543 3445555555555555555555555555544321
Q ss_pred ----CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH
Q 023133 134 ----CKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL 208 (287)
Q Consensus 134 ----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 208 (287)
..| +..++..+..++.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|...++++.+.. +.+.
T Consensus 228 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 305 (388)
T 1w3b_A 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA 305 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccH
Confidence 022 3456667777777788888888888887775432 45677777888888888888888888877653 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
.++..+...+...|++++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.|+++.+..|+.+
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 77888888888888888888888888764 234566778888888888888888888888887777653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=4.5e-25 Score=178.48 Aligned_cols=268 Identities=12% Similarity=0.102 Sum_probs=195.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
+..+...+...|++++|...++...+.++....+|..+..++.+.|++++|+..|+++.... +.+..++..+..++...
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHc
Confidence 34567788899999999999999988876555899999999999999999999999998753 33566899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 161 (287)
|++++|.+.++++.+.. |.+...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|
T Consensus 115 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 192 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHF 192 (388)
T ss_dssp SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999886 5667788889999999999999999999998763 345678999999999999999999999
Q ss_pred HHHHHcCCCCChhHHH----------------------------------HHHHHHHhcCchHHHHHHHHHHhhCCCcCC
Q 023133 162 ASMKEAGVVPDFISYN----------------------------------TLLNNLRKIRRLDLCLIYFREMGESGIKPD 207 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 207 (287)
+++.+.+.. +...|. .+...+.+.|++++|.+.++++.+.+ +.+
T Consensus 193 ~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 270 (388)
T 1w3b_A 193 EKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHF 270 (388)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSC
T ss_pred HHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC
Confidence 988765432 333444 44444555555555555555554432 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 208 LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
..+|..+..++.+.|++++|.+.|+++.+. .+.+..++..+...+...|++++|.+.++++.+..|+
T Consensus 271 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 271 PDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444555555555555555555555555543 1334455555555555555555555555555555444
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6.1e-24 Score=175.02 Aligned_cols=271 Identities=11% Similarity=0.044 Sum_probs=157.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
..+...+.+.|++++|+.+|+++.+..+....++..+..++...|++++|+..++++.+.+ +.+...+..+..++...|
T Consensus 30 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 30 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 3444555555555555555555554433323445555555555555555555555554432 223444444444455555
Q ss_pred ChHHHHHHHHHHHhcCC------------------------------------------------CCcHHHHHHHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIAS------------------------------------------------PESIIVVNRIIFAFA 114 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~ 114 (287)
++++|.+.|+++.+... +.+..++..+..+|.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55555555544444321 334455555555556
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHH------------HHH
Q 023133 115 KSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTL------------LNN 182 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~ 182 (287)
+.|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.... +...+..+ ...
T Consensus 189 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665554432 334556666666677777777777777776654321 33333333 566
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcC
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPD-----LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG 257 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (287)
+.+.|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|...++++.+.. +.+...+..+..+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 67777777777777777654 233 3456677777777788888888887777542 335677777778888888
Q ss_pred ChHHHHHHHHHHhhcCCCCCCh
Q 023133 258 KVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
++++|...|+++.+..|+.+..
T Consensus 344 ~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp CHHHHHHHHHHHHTTSSSCHHH
T ss_pred CHHHHHHHHHHHHHhCcchHHH
Confidence 8888888888887777766443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=9.6e-24 Score=173.85 Aligned_cols=257 Identities=10% Similarity=-0.002 Sum_probs=194.0
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (287)
...+...+.+....++.....+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445555666666555444889999999999999999999999998763 457889999999999999999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH---hhHHHH------------HHHHHhcCCHHHHHH
Q 023133 95 VQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDL---ITYNIV------------LDILGRVGRVNDMLN 159 (287)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~ 159 (287)
.+.+ +.+..++..+..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|..
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9987 5678899999999999999999999999998764 2233 455555 344888999999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 023133 160 EFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQI 239 (287)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 239 (287)
.|+.+.+... .+..++..+..+|.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+..
T Consensus 165 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999887643 367788888888888888888888888887653 4467788888888888888888888888887642
Q ss_pred CcchHhHHHH------------HHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 240 RPSIYVYRSL------------IDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 240 ~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
+.+...+..+ ...+...|++++|..+|+++....|+.+
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 2233334333 6777788888888888888877777643
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.1e-23 Score=163.68 Aligned_cols=273 Identities=10% Similarity=-0.003 Sum_probs=236.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
+..+...+...|++++|+++|+++.+.++.....+..++.++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 34577888899999999999999999887666788888999999999999999999999863 44677888899999999
Q ss_pred C-ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 82 D-DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 82 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
| ++++|.+.++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9 9999999999999876 5667889999999999999999999999998764 33456777899999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC--------CcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG--------IKPDLLTYTALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 232 (287)
+++..+.... +...+..+...+...|++++|...++++.+.. .+.+..++..+..++...|++++|...++
T Consensus 182 ~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999887533 67889999999999999999999999987531 13345788999999999999999999999
Q ss_pred HHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 233 DMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
+..+.. +.+...+..+...+...|++++|.+.|+++.+..|+.+..
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 998763 4467889999999999999999999999999998876543
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=2.2e-21 Score=154.68 Aligned_cols=270 Identities=11% Similarity=0.067 Sum_probs=160.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC----CHHHHHHH-----
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTL----SSDCYTNF----- 74 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l----- 74 (287)
.+...+...|++++|...|+++.+.++....++..+...+...|++++|...+++..+. .| +...+..+
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 42 RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE 119 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH
Confidence 34444445555555555555554444333344555555555555555555555555432 22 22222222
Q ss_pred -------HHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 023133 75 -------ARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147 (287)
Q Consensus 75 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (287)
...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 197 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344455555555555555555543 3455566666666666666666666666666553 3355566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhHHH------------HHHHHHHhcCchHHHHHHHHHHhhCCCcCCH----HHH
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVPDFISYN------------TLLNNLRKIRRLDLCLIYFREMGESGIKPDL----LTY 211 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 211 (287)
+...|++++|...|+...+.... +...+. .+...+.+.|++++|...++++.+.. +.+. ..+
T Consensus 198 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 275 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSK 275 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 77777777777777776654322 222222 22445667777777777777776542 1122 224
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChh
Q 023133 212 TALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 212 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (287)
..+..++...|++++|...+++..+.. +.+..++..+...+...|++++|.+.|+++.+..|+.+...
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 456677888888888888888887652 33667788888888888888888888888888887765543
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7e-21 Score=151.80 Aligned_cols=269 Identities=12% Similarity=0.070 Sum_probs=226.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
+..+...+...|++++|+..|+++.+.++..+.++..+..++...|++++|+..++++.+.. +.+...+..+..++...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 45678889999999999999999999887666899999999999999999999999998763 33678888999999999
Q ss_pred CChHHHHHHHHHHHhcCCC---CcHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASP---ESIIVVNRI------------IFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD 146 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 146 (287)
|++++|...++++.+.. + .+...+..+ ...+...|++++|...++++.+.. +.+...+..+..
T Consensus 85 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 99999999999999875 3 455555555 578999999999999999998764 456778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHH------------HH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT------------AL 214 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l 214 (287)
++...|++++|...++.+.+... .+..++..+...+...|++++|...+++..+.. +.+...+. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988753 377889999999999999999999999998763 33333333 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcc-h----HhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQQQIRPS-I----YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
...+.+.|++++|...++++.+.. |+ . ..+..+..++...|++++|.+.++++.+..|+.+
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence 667899999999999999998753 33 2 2355677889999999999999999999887654
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2.2e-22 Score=161.33 Aligned_cols=263 Identities=13% Similarity=0.030 Sum_probs=201.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
|..+...+.+.|++++|+..|+++...++....+|..+..++.+.|++++|+..|++..+.. +.+..++..+..++...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 45677788889999999999999888776555888899999999999999999999988763 34577888888889999
Q ss_pred CChHHHHHHHHHHHhcCCCCc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--CHhhHHHHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPES----------IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP--DLITYNIVLDILG 149 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 149 (287)
|++++|...++++.+.. +.+ ...+..+...+.+.|++++|...|+++.+.. +. +..++..+...+.
T Consensus 147 g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHH
Confidence 99999999999888764 121 2233445778888999999999998887763 22 5778888888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 023133 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLR 229 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 229 (287)
..|++++|...|+++.+.... +..+|..+..+|...|++++|...++++.+.. +.+..++..+..+|...|++++|..
T Consensus 225 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998876433 67788889999999999999999999888763 3457788888899999999999999
Q ss_pred HHHHHHhCCC---C--------cchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 230 LFNDMKQQQI---R--------PSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 230 ~~~~~~~~~~---~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.|+++.+... . .+...|..+..++...|+.+.+.++.++-
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9998875310 0 13567888888888899988888777653
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=1.4e-22 Score=159.70 Aligned_cols=268 Identities=10% Similarity=0.014 Sum_probs=223.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
|..+...+...|++++|..+|+++.+..+....++..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 34567888999999999999999998876555889999999999999999999999998863 44678888899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRI--------------IF-AFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD 146 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 146 (287)
|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 99999999999998875 3333333333 33 3778899999999999988764 446788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
.+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999988753 367889999999999999999999999998764 4567889999999999999999
Q ss_pred HHHHHHHHHhCCCCc-----------chHhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 227 SLRLFNDMKQQQIRP-----------SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 227 a~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
|.+.++++.+..... +...+..+..++...|++++|..++++.....|
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999998652111 477889999999999999999999987755444
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.2e-21 Score=152.04 Aligned_cols=265 Identities=11% Similarity=0.102 Sum_probs=218.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
|+.....|+++.|+..++.....++.+. .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 4566789999999999988766554443 4667788999999999999987654 2456677888888999999999
Q ss_pred HHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIAS-PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
++|.+.++++...+. |.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...|+.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988763 55677788888999999999999999987 46778899999999999999999999999
Q ss_pred HHHcCCCCChhHH---HHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 023133 164 MKEAGVVPDFISY---NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240 (287)
Q Consensus 164 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 240 (287)
+.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 98874 453211 123344445699999999999999873 6688899999999999999999999999998763 4
Q ss_pred cchHhHHHHHHHHHhcCChHH-HHHHHHHHhhcCCCCCChhhHhh
Q 023133 241 PSIYVYRSLIDNLKKMGKVDL-AMTIFEEMNSSLSDLAGPKDFKR 284 (287)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~ 284 (287)
-+..++..++..+...|+.++ +.++++++.+..|+.+....+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~ 276 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 467789999999999999976 67999999999999987665543
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=1.2e-21 Score=157.18 Aligned_cols=262 Identities=14% Similarity=0.068 Sum_probs=153.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
..+...+.+.|++++|...|+++.+.++....++..+..++...|++++|+..++++.+.. +.+..++..+..++...|
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 3455566666666666666666666554433566666666666666666666666666543 334556666666666666
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNR---------------IIFAFAKSRQIEKALLIFDHIKGLKCKP-DLITYNIVLD 146 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 146 (287)
++++|...++++.+... .+...+.. .+..+...|++++|...|+++.+..... +..++..+..
T Consensus 147 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 147 LQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp CHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 66666666666665542 22222211 1222236666666666666665542110 3556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
.+...|++++|...|+++.+... .+..++..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 66666666666666666655432 245566666666666666666666666666542 3345566666666666666666
Q ss_pred HHHHHHHHHhCCCC----------cchHhHHHHHHHHHhcCChHHHHHHHHH
Q 023133 227 SLRLFNDMKQQQIR----------PSIYVYRSLIDNLKKMGKVDLAMTIFEE 268 (287)
Q Consensus 227 a~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (287)
|...|+++.+.... ....+|..+..++...|++++|..++++
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 66666666543100 0145666666666666666666666553
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=6.2e-21 Score=152.93 Aligned_cols=264 Identities=9% Similarity=-0.022 Sum_probs=211.1
Q ss_pred HHHhcCChhHHHH-HHHHHhhcCCCC---c-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 8 KLCKAGNVSAAVR-LLQSLRDKNIFL---P-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 8 ~~~~~g~~~~a~~-~~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
.+...|++++|.+ .|++.....+.. . ..+..+...+.+.|++++|+..++++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678888888 888655444332 2 578899999999999999999999999864 456788899999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHH---------------HHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNI---------------VLDI 147 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~ 147 (287)
++++|...++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999999886 5688899999999999999999999999998764 222222221 2344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 448999999999999998764332 47889999999999999999999999998764 4567899999999999999999
Q ss_pred HHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
|...|+++.+.. +.+...+..+..++...|++++|...|+++....|+.
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999998753 4467889999999999999999999999998877766
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=2.4e-21 Score=155.31 Aligned_cols=239 Identities=8% Similarity=0.023 Sum_probs=201.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 569999999999999999999999999864 4578889999999999999999999999999886 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCC-Hhh----------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhHHHHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPD-LIT----------YNIVLDILGRVGRVNDMLNEFASMKEAGVV-PDFISYNTLLN 181 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 181 (287)
...|++++|...|+++.+.. |+ ... +..+...+...|++++|...|+++.+.... ++..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998753 33 222 334578899999999999999999887432 25788999999
Q ss_pred HHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHH
Q 023133 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDL 261 (287)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (287)
.+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998764 4568899999999999999999999999999753 3457889999999999999999
Q ss_pred HHHHHHHHhhcCCCCCC
Q 023133 262 AMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 262 a~~~~~~~~~~~~~~~~ 278 (287)
|...|+++....|+..+
T Consensus 300 A~~~~~~al~~~~~~~~ 316 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRN 316 (365)
T ss_dssp HHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCcccCC
Confidence 99999999887776443
No 18
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.8e-20 Score=154.73 Aligned_cols=268 Identities=11% Similarity=-0.029 Sum_probs=152.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
..+...+.+.|++++|+..|+++...++ .+.+|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++...|
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh
Confidence 3455667777777777777777777663 12677777777777777777777777777653 334566677777777777
Q ss_pred ChHHHHHHHHHHHhcCCCC-------------------------------------------------------------
Q 023133 83 DCTQLLIFIEEVVQIASPE------------------------------------------------------------- 101 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~------------------------------------------------------------- 101 (287)
++++|...|+++.+.+...
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHH
Confidence 7777777777665544210
Q ss_pred -----------------cHHHHHHHHHHHHh---cCCHHHHHHHHHHHhc-----CCC--------CCCHhhHHHHHHHH
Q 023133 102 -----------------SIIVVNRIIFAFAK---SRQIEKALLIFDHIKG-----LKC--------KPDLITYNIVLDIL 148 (287)
Q Consensus 102 -----------------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~ 148 (287)
+...+......+.. .|++++|...|+++.+ ..- +.+..++..+...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
T 2gw1_A 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFK 247 (514)
T ss_dssp HTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHH
Confidence 12222222333332 5666666666666654 210 11233555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 023133 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228 (287)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 228 (287)
...|++++|...|+.+.+.... ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 248 ~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 324 (514)
T 2gw1_A 248 FLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAG 324 (514)
T ss_dssp HHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 6666666666666666554322 5555555555556666666666665555442 223445555555555555555555
Q ss_pred HHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
..++++.+.. +.+...+..+...+...|++++|..+++++.+..|+.
T Consensus 325 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 371 (514)
T 2gw1_A 325 KDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371 (514)
T ss_dssp HHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC
Confidence 5555555432 2233444555555555555555555555555544443
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.4e-20 Score=157.45 Aligned_cols=272 Identities=11% Similarity=0.020 Sum_probs=227.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC---------------
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTL--------------- 66 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------- 66 (287)
|..+...+.+.|++++|+..|+++.+.++....++..+..++.+.|++++|...|+++...+...
T Consensus 42 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (514)
T 2gw1_A 42 YSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQ 121 (514)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHH
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHH
Confidence 56788999999999999999999999886555899999999999999999999999987654210
Q ss_pred ---------------------------------------------------------------CHHHHHHHHHHHh---c
Q 023133 67 ---------------------------------------------------------------SSDCYTNFARAFI---M 80 (287)
Q Consensus 67 ---------------------------------------------------------------~~~~~~~l~~~~~---~ 80 (287)
+...+......+. +
T Consensus 122 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (514)
T 2gw1_A 122 AMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRS 201 (514)
T ss_dssp HHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhh
Confidence 0222233333333 3
Q ss_pred cCChHHHHHHHHHHHh-----c--CC------CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQ-----I--AS------PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (287)
.|++++|...++++.+ . .. +.+..++..+...+...|++++|...|+++.+.. |+...+..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 7999999999999987 3 11 3346788889999999999999999999998764 447788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEES 227 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 227 (287)
+...|++++|...++.+.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999886533 67789999999999999999999999998864 44667888999999999999999
Q ss_pred HHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 228 LRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
...++++.+.. +.+...+..+...+...|++++|...++++....|+.+.
T Consensus 358 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 407 (514)
T 2gw1_A 358 ETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407 (514)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccch
Confidence 99999998752 345778899999999999999999999999888777654
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.1e-19 Score=143.36 Aligned_cols=253 Identities=15% Similarity=0.070 Sum_probs=215.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN-DIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
+..++..+...|++++|...++++.+.++..+.++..+...+...| ++++|...+++..+.. +.+...+..+...+..
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAV 137 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3456788899999999999999999988766689999999999999 9999999999998764 3356788899999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.|++++|...++++.+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 999999999999999886 4566778889999999999999999999998875 45677899999999999999999999
Q ss_pred HHHHHHcC--------CCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 161 FASMKEAG--------VVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 161 ~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 232 (287)
+++..+.. ...+..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99987642 12345788999999999999999999999998764 4467789999999999999999999999
Q ss_pred HHHhCCCCcchHhHHHHHHHH-HhcCCh
Q 023133 233 DMKQQQIRPSIYVYRSLIDNL-KKMGKV 259 (287)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~-~~~g~~ 259 (287)
+..+.. +.+...+..+..++ ...|+.
T Consensus 295 ~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 295 TALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 998753 33566777777777 455554
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=6.8e-20 Score=154.11 Aligned_cols=267 Identities=13% Similarity=0.076 Sum_probs=169.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
|..+...+.+.|++++|++.|+++...++..+.++..+..++.+.|++++|++.+++..+.+ +.+..++..+..++...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 45567788899999999999999988876655888999999999999999999999988764 44677788888888888
Q ss_pred CChHHHHHHHHHH-------------------------------------------------------------------
Q 023133 82 DDCTQLLIFIEEV------------------------------------------------------------------- 94 (287)
Q Consensus 82 ~~~~~a~~~~~~~------------------------------------------------------------------- 94 (287)
|++++|...|+.+
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 8888888877432
Q ss_pred ------------------------------------------HhcCCCCc-------HHHHHHHHHHHHhcCCHHHHHHH
Q 023133 95 ------------------------------------------VQIASPES-------IIVVNRIIFAFAKSRQIEKALLI 125 (287)
Q Consensus 95 ------------------------------------------~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~ 125 (287)
.+.. +.+ ..++..+...+...|++++|...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 1111 111 11233444455555566666666
Q ss_pred HHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCc
Q 023133 126 FDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIK 205 (287)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 205 (287)
|+++.+. .|+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|...++++.+.. +
T Consensus 266 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 266 LQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 6655544 344555555556666666666666666665554322 44556666666666666666666666665542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 206 PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++....|+
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 234455566666666666666666666665542 233455566666666666666666666666554443
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=172.67 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=123.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHH
Q 023133 101 ESIIVVNRIIFAFAKSRQIEKALLIFDHIKG---LKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYN 177 (287)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (287)
.-..+||++|++|++.|++++|.++|++|.+ .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456899999999999999999999988753 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCch-HHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc------hHhHHHHH
Q 023133 178 TLLNNLRKIRRL-DLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS------IYVYRSLI 250 (287)
Q Consensus 178 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li 250 (287)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999985 78899999999999999999999998766654 344444444 2244443 44555566
Q ss_pred HHHHhcC
Q 023133 251 DNLKKMG 257 (287)
Q Consensus 251 ~~~~~~g 257 (287)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666554
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=165.76 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=110.9
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHH
Q 023133 137 DLITYNIVLDILGRVGRVNDMLNEFASMK---EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTA 213 (287)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (287)
-..|||+||.+|++.|++++|.++|.+|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999998875 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh
Q 023133 214 LIDSFGRTGN-IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 214 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (287)
||+++++.|+ .++|.++|++|.+.|+.||..+|++++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 9999999998 47899999999999999999999999865544
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.3e-19 Score=136.45 Aligned_cols=226 Identities=10% Similarity=0.018 Sum_probs=146.3
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC--c----HHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPE--S----IIVVN 107 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 107 (287)
..+..+...+...|++++|+..+++..+.. .+...+..+..++...|++++|...++++.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 355666666666677777777776666655 556666666666666777777777766665543111 1 45666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 023133 108 RIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR 187 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 187 (287)
.+...|...|++++|...|++..+. .|+. ..+...|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 6777777777777777777766654 2332 3345556677777777776664321 4456666667777777
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (287)
++++|...++++.+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777776543 3356667777777777777777777777776642 3345667777777777777777777777
Q ss_pred HHhhcC
Q 023133 268 EMNSSL 273 (287)
Q Consensus 268 ~~~~~~ 273 (287)
++.+..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 776665
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=7.3e-19 Score=138.39 Aligned_cols=236 Identities=10% Similarity=0.017 Sum_probs=201.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 578888999999999999999999998864 4467788889999999999999999999999886 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIV--------------LD-ILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (287)
...|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.... +...+..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 99999999999999998763 2233333333 22 377889999999999999887543 7788999
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCC
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGK 258 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (287)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998764 4567889999999999999999999999998753 4467889999999999999
Q ss_pred hHHHHHHHHHHhhcCCC
Q 023133 259 VDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 259 ~~~a~~~~~~~~~~~~~ 275 (287)
+++|.+.++++....|+
T Consensus 256 ~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999999999888776
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=1.7e-18 Score=145.59 Aligned_cols=261 Identities=13% Similarity=0.090 Sum_probs=217.9
Q ss_pred CChhHHHHHHHHHhhcCCCCch-------hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 13 GNVSAAVRLLQSLRDKNIFLPN-------AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 13 g~~~~a~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
|++++|..+|+++.+..+..+. ++..+...+...|++++|...+++.... .|+...+..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 5899999999999988766542 4677778888999999999999999986 456888889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
+|...++++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999886 5678899999999999999999999999998764 3456788999999999999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC-----CcCCHHHHHHHHHHHHhc----------CCHHHHHHH
Q 023133 166 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG-----IKPDLLTYTALIDSFGRT----------GNIEESLRL 230 (287)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~ 230 (287)
+.... +...+..+...+...|++++|...++++.+.. .......+..+...+... |++++|...
T Consensus 372 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 87533 56788999999999999999999999987542 111223344556677777 999999999
Q ss_pred HHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 231 FNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..|..+..
T Consensus 451 ~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 451 LTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 99999763 4467889999999999999999999999999998876553
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5e-18 Score=129.06 Aligned_cols=223 Identities=12% Similarity=0.067 Sum_probs=192.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC--CC----HHHHHHHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRT--LS----SDCYTNFA 75 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~ 75 (287)
|..+...+...|++++|+..|++..+.+ ..+.++..+..++...|++++|+..+++..+.... ++ ...+..+.
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 5678889999999999999999998888 44489999999999999999999999999875422 22 57888899
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHH
Q 023133 76 RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN 155 (287)
Q Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (287)
.++...|++++|...++++.+.. |+. ..+.+.|++++|...++++.... +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999875 332 34667789999999999998763 335567888999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+|...+++..+.... +..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..
T Consensus 157 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999887543 67889999999999999999999999998764 4567889999999999999999999999988
Q ss_pred hC
Q 023133 236 QQ 237 (287)
Q Consensus 236 ~~ 237 (287)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=1.7e-18 Score=128.48 Aligned_cols=196 Identities=11% Similarity=0.006 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (287)
...+..+...+.+.|++++|...+++.++.. |.+...+..+...+.+.|++++|...|++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3344444444444444444444444444443 3344444444444444455555544444444332 2233344444444
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHH
Q 023133 148 LGRV-----------GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALID 216 (287)
Q Consensus 148 ~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 216 (287)
+... |++++|...|++..+.... +...+..+...+...|++++|...|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 4444 5666666666655554322 34455555555666666666666666655544 45555555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 217 SFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 217 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+|...|++++|...|++..+.. +.+...+..+...+...|++++|...|++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666655532 223445555555566666666666665554
No 29
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=8.5e-18 Score=127.57 Aligned_cols=212 Identities=10% Similarity=0.067 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (287)
...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455666677777788888888887777765 4566777777778888888888888887776653 3356677777778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
+...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877632333 45567777778888888888888888877653 3456777888888888888888
Q ss_pred HHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
|...++++.+.. +.+...+..+...+...|++++|.++++++....|+.+....+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 888888887652 34566777778888888888888888888888888776655544
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=9.4e-18 Score=130.03 Aligned_cols=243 Identities=11% Similarity=0.047 Sum_probs=192.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhcc
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTL-SSDCYTNFARAFIMT 81 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 81 (287)
.+.++|...|+++.|+..++. .+ .|. .++..+...+...++.+.|++.++++...+..| +...+..+...+...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~---~~-~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP---SS-APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT---TS-CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhcc---cC-ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 367899999999999986644 22 223 788889999999999999999999998876555 455667777899999
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhH---HHHHHHHHhcCCHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITY---NIVLDILGRVGRVNDML 158 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~ 158 (287)
|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 999999999987 5778899999999999999999999999998763 554322 22334445669999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhC
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE-SLRLFNDMKQQ 237 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~ 237 (287)
.+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 187 ~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 187 YIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999998874 4578899999999999999999999999998764 4577889999999999999876 67899998875
Q ss_pred CCCcchHhHHHHHHHHHhcCChHHHHHH
Q 023133 238 QIRPSIYVYRSLIDNLKKMGKVDLAMTI 265 (287)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (287)
.|+... +.+...+.+.++++..-
T Consensus 265 --~P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 265 --HRSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp --CTTCHH---HHHHHHHHHHHHHHHHH
T ss_pred --CCCChH---HHHHHHHHHHHHHHHHH
Confidence 454433 22334444555555443
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.82 E-value=2.3e-17 Score=122.75 Aligned_cols=212 Identities=12% Similarity=0.040 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (287)
..+..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344445555555566666666665555543 3345555556666666666666666666555432 23444555566666
Q ss_pred Hhc-CCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 149 GRV-GRVNDMLNEFASMKEAGVVPD-FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 149 ~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666655222222 3455566666666666666666666665542 2345566666677777777777
Q ss_pred HHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
|...++++.+.....+...+..+...+...|+.++|..+++.+....|+.+....++
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 777777766542113455556666666677777777777777766666665554443
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=3.9e-17 Score=125.29 Aligned_cols=229 Identities=12% Similarity=0.074 Sum_probs=118.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhccC
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS--SDCYTNFARAFIMTD 82 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 82 (287)
....+...|++++|+..|++..+.++....++..+..++...|++++|+..+++..+.+..|+ ...+..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 445566666666666666666665544445666666666666666666666666665221111 223555566666666
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 162 (287)
++++|...+++..+.. +.+..++..+...|...|++++|...|++..+.. +.+...+..+...+...+++++|...|+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666554 3444556666666666666666666666655542 2233444444422233335666666665
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCc---hHHHHHHHHHHhhCC-CcCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRR---LDLCLIYFREMGESG-IKPD------LLTYTALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 232 (287)
+..+.... +...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++++|.+.++
T Consensus 167 ~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55554321 23444444555554454 444555554443320 0111 1234444444444444444444444
Q ss_pred HHHh
Q 023133 233 DMKQ 236 (287)
Q Consensus 233 ~~~~ 236 (287)
+..+
T Consensus 246 ~al~ 249 (272)
T 3u4t_A 246 NILA 249 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 33
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=7.3e-18 Score=129.50 Aligned_cols=247 Identities=6% Similarity=-0.077 Sum_probs=193.9
Q ss_pred HhcCChhHHHHHHHHHhhcCCCC--c--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChH
Q 023133 10 CKAGNVSAAVRLLQSLRDKNIFL--P--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCT 85 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (287)
...|++++|+..|+++.+..... . .++..+...+...|++++|+..|++..+.. +.+...+..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 35688999999999998874322 2 688899999999999999999999998864 446788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
+|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+....
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999876 567888999999999999999999999999875 4555555555566677899999999998887
Q ss_pred HcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 023133 166 EAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP---DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242 (287)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 242 (287)
.... ++...+ .++..+...++.++|...+....+..... +...+..+..+|...|++++|...|++..+. .|+
T Consensus 172 ~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 6532 344444 46777788888899999999887653111 1567888999999999999999999999975 343
Q ss_pred hHhHHHHHHHHHhcCChHHHHHHH
Q 023133 243 IYVYRSLIDNLKKMGKVDLAMTIF 266 (287)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~a~~~~ 266 (287)
. +.....++...|++++|.+.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 233355677888898888776
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.82 E-value=1.5e-17 Score=127.61 Aligned_cols=245 Identities=9% Similarity=-0.083 Sum_probs=198.2
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC--cHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPE--SIIVVNRIIF 111 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 111 (287)
..+......+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+....+ ....|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 356778889999999999999999998763 3345588889999999999999999999998843222 2345889999
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHH
Q 023133 112 AFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191 (287)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (287)
.+...|++++|...|++..+.. +.+..++..+...|...|++++|...|++..+... .+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764 34567899999999999999999999999987643 256677777734445569999
Q ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCcc------hHhHHHHHHHHHhcCChHH
Q 023133 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGN---IEESLRLFNDMKQQQ-IRPS------IYVYRSLIDNLKKMGKVDL 261 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~ 261 (287)
|...++++.+.. +.+...+..+..++...|+ +++|...+++..+.. -.|+ ...|..+...+...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999998763 4456788888888888888 888999998887541 1233 2578888899999999999
Q ss_pred HHHHHHHHhhcCCCCCChhhH
Q 023133 262 AMTIFEEMNSSLSDLAGPKDF 282 (287)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~ 282 (287)
|.+.|+++....|+++.....
T Consensus 240 A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHH
Confidence 999999999999988765443
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1e-19 Score=145.01 Aligned_cols=227 Identities=11% Similarity=0.083 Sum_probs=97.1
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 023133 10 CKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
-+.|++++|.+.++++... .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 14 ~~~~~ld~A~~fae~~~~~-----~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP-----AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh-----HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4678899999999998332 48999999999999999999999653 577789999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 023133 90 FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGV 169 (287)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 169 (287)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877774 4557888999999999999999988884 477789999999999999999999999976
Q ss_pred CCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHH
Q 023133 170 VPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSL 249 (287)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (287)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 47899999999999999999999988 278899999999999999999966555422 233345578
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 250 IDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
+..|.+.|++++|..+++......+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 899999999999999999998776544
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.81 E-value=1.5e-17 Score=123.38 Aligned_cols=196 Identities=13% Similarity=0.011 Sum_probs=148.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+...+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 577788888888888888888888887653 3456777788888888888888888888888876 56677888888888
Q ss_pred Hhc-----------CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 114 AKS-----------RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 114 ~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
... |++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 888 99999999998887763 3356678888888899999999999999988876 578888888888
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999888763 4466778888888889999999988887654
No 37
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.81 E-value=5e-16 Score=119.32 Aligned_cols=224 Identities=11% Similarity=0.001 Sum_probs=176.7
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHhcCCCCcHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM----TDDCTQLLIFIEEVVQIASPESIIVVNRI 109 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 109 (287)
.++..+...+...|++++|+..|++..+. -+...+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 56777788888888888888888888763 345667777777887 888888888888888765 56777778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 023133 110 IFAFAK----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR----VGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181 (287)
Q Consensus 110 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 181 (287)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 888888 888888888888887753 66677788888888 888888888888888765 5566777777
Q ss_pred HHHh----cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH
Q 023133 182 NLRK----IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR----TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253 (287)
Q Consensus 182 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (287)
.|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 7777 888888888888888764 45677778888888 888888988888888764 356677777788
Q ss_pred Hh----cCChHHHHHHHHHHhhcCCC
Q 023133 254 KK----MGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 254 ~~----~g~~~~a~~~~~~~~~~~~~ 275 (287)
.. .+++++|.++|++..+..|+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 87 88888898888888777664
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.80 E-value=1.1e-17 Score=126.01 Aligned_cols=203 Identities=13% Similarity=0.086 Sum_probs=107.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (287)
.+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 44444455555555555555555555543 3445555555556666666666666665555432 234445555556666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 023133 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLR 229 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 229 (287)
..|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666555432 244555556666666666666666666655442 2345556666666666666666666
Q ss_pred HHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 230 LFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
.++++.+.. +.+..++..+...+...|++++|.+.++++.+..|+.+
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 666665542 23455566666666666666666666666666666544
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=3.2e-16 Score=118.80 Aligned_cols=200 Identities=11% Similarity=-0.021 Sum_probs=175.3
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 578888899999999999999999998764 4467888889999999999999999999999876 56788899999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 192 (287)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998732344 4567888999999999999999999999887533 678889999999999999999
Q ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
...++++.+.. +.+...+..+...+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999998764 456778889999999999999999999999875
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=1.1e-16 Score=128.33 Aligned_cols=244 Identities=11% Similarity=0.083 Sum_probs=161.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETND-IDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
|+.+...+.+.|++++|+..|++....++....+|+.+..++...|+ +++|+..+++.+... +-+...|..+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 45566667777777777777777777766555777777777777775 777777777777653 2356677777777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cCCHHHH--
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR-VGRVNDM-- 157 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a-- 157 (287)
.|++++|+..++++++.. +.+..+|..+..++.+.|++++|+..|+++.+.. +.+...|+.+..++.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 777777777777777765 5666777777777777777777777777776653 3355667777777777 4554555
Q ss_pred ---HHHHHHHHHcCCCCChhHHHHHHHHHHhcC--chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC---------C
Q 023133 158 ---LNEFASMKEAGVVPDFISYNTLLNNLRKIR--RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG---------N 223 (287)
Q Consensus 158 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~ 223 (287)
+..|++....... +...|..+...+...| +.++|.+.+.++ +.. +.+...+..+..+|.+.| .
T Consensus 257 ~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 257 EREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 4666666665433 4566766666676666 567777777776 332 445566667777776653 2
Q ss_pred HHHHHHHHHHH-HhCCCCcc-hHhHHHHHHHH
Q 023133 224 IEESLRLFNDM-KQQQIRPS-IYVYRSLIDNL 253 (287)
Q Consensus 224 ~~~a~~~~~~~-~~~~~~~~-~~~~~~li~~~ 253 (287)
.++|.++|+++ .+. .|. ...|..+...+
T Consensus 334 ~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 334 LNKALELCEILAKEK--DTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHTT--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 47777777777 443 343 33444444433
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=5.6e-17 Score=129.95 Aligned_cols=237 Identities=12% Similarity=0.097 Sum_probs=202.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDD-CTQLLIFIEEVVQIASPESIIVVNRIIFA 112 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (287)
.+|..+...+.+.|++++|+..+++.+... +-+...|+.+..++...|+ +++|+..++++++.. +.+..+|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 578889999999999999999999999864 3367788899999999996 999999999999987 6788999999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCchHH
Q 023133 113 FAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK-IRRLDL 191 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 191 (287)
+...|++++|+..|+++.+.. +.+...|..+..++.+.|++++|+..|+++.+.... +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999998875 457789999999999999999999999999988654 77899999999998 566577
Q ss_pred H-----HHHHHHHhhCCCcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcC-------
Q 023133 192 C-----LIYFREMGESGIKPDLLTYTALIDSFGRTG--NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMG------- 257 (287)
Q Consensus 192 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g------- 257 (287)
| ...+++.++.. +-+...|..+...+...| ++++|.+.+.++ +. .+.+...+..+...+.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 58888888763 446778888898898888 689999999988 43 3445678888999998874
Q ss_pred --ChHHHHHHHHHH-hhcCCCCC
Q 023133 258 --KVDLAMTIFEEM-NSSLSDLA 277 (287)
Q Consensus 258 --~~~~a~~~~~~~-~~~~~~~~ 277 (287)
..++|.++|+++ .+..|...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~ 353 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRK 353 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHHHHHhCchhH
Confidence 358999999999 78877543
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=2.7e-17 Score=133.78 Aligned_cols=271 Identities=12% Similarity=0.044 Sum_probs=211.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHhc-----CCCCHHHHHHH
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLLVSS-----RTLSSDCYTNF 74 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l 74 (287)
.+...+...|++++|+..|++..+.++..+ .++..+...+...|++++|+..+++..+.. .+.....+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 456778899999999999999988866544 478889999999999999999999987541 12234577788
Q ss_pred HHHHhccCChHHHHHHHHHHHhcC-----CCCcHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHhcC
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQIA-----SPESIIVVNRIIFAFAKSRQ-----------------IEKALLIFDHIKGL 132 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~ 132 (287)
...+...|++++|...+++..+.. .+....++..+...|...|+ +++|...+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 899999999999999999887642 12345688889999999999 99999998876542
Q ss_pred ----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 133 ----KCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV-PD----FISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 133 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
+..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 2347788889999999999999999998653211 11 237888899999999999999999988753
Q ss_pred CC----c-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CcchHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 203 GI----K-PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ----QI-RPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 203 ~~----~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
.. . ....++..+...|...|++++|...+++..+. +. .....++..+...+...|++++|.++++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 1 12467888999999999999999999998753 11 112457888899999999999999999999776
Q ss_pred CC
Q 023133 273 LS 274 (287)
Q Consensus 273 ~~ 274 (287)
.+
T Consensus 373 ~~ 374 (411)
T 4a1s_A 373 AX 374 (411)
T ss_dssp CC
T ss_pred Hh
Confidence 54
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.79 E-value=3.5e-17 Score=123.35 Aligned_cols=199 Identities=12% Similarity=0.072 Sum_probs=152.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
.+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 578888888899999999999999988753 4467788888888999999999999999988875 56778888899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999887754 44677888888999999999999999999887643 36778888889999999999999
Q ss_pred HHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 194 IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
..++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999988764 446778888999999999999999999999875
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.78 E-value=3.1e-17 Score=125.99 Aligned_cols=230 Identities=10% Similarity=-0.020 Sum_probs=187.3
Q ss_pred HhhcCChhHHHHHHHHHHHhcC---CCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 023133 43 SAETNDIDLSFQILKDLLVSSR---TLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119 (287)
Q Consensus 43 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 119 (287)
....|++++|+..++++.+... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3456889999999999987632 1245678888999999999999999999999886 56788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHH
Q 023133 120 EKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREM 199 (287)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 199 (287)
++|...|+++.+.. +.+...+..+..++...|++++|...|+++.+.. |+.......+..+...|++++|...+.+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999998764 3467789999999999999999999999998864 44444455555667789999999999888
Q ss_pred hhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---cchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 200 GESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR---PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
.... +++...+ .++..+...++.++|.+.+++..+.... .+...+..+...+...|++++|...|+++....|+.
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 7653 3343344 4777788889999999999998764211 125788899999999999999999999999988865
Q ss_pred CC
Q 023133 277 AG 278 (287)
Q Consensus 277 ~~ 278 (287)
..
T Consensus 249 ~~ 250 (275)
T 1xnf_A 249 FV 250 (275)
T ss_dssp CH
T ss_pred HH
Confidence 43
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.78 E-value=3.1e-16 Score=116.56 Aligned_cols=209 Identities=11% Similarity=-0.001 Sum_probs=170.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
.++..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 678888889999999999999999988763 4457788888889999999999999999998876 56778888899999
Q ss_pred Hhc-CCHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHH
Q 023133 114 AKS-RQIEKALLIFDHIKGLKCKPD-LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL 191 (287)
Q Consensus 114 ~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 191 (287)
... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHH
Confidence 999 999999999999887322333 567888888999999999999999998876433 57788889999999999999
Q ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHH
Q 023133 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYR 247 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (287)
|...++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+.....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 9999999887631156777888888889999999999999998764 35444433
No 46
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.1e-17 Score=133.53 Aligned_cols=245 Identities=13% Similarity=0.134 Sum_probs=109.7
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
+|+.|+.++.+.|++++|++.|.+.. .+.+|..++.++...|++++|+..++..++. .+++.+.+.++.+|.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~-----D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD-----DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHH
Confidence 58889999999999999999997632 1148999999999999999999977777663 4557778889999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.|+++++.++++ .|+..+|+.++..|...|.+++|...|..+ ..|..+..++.+.|++++|.+.
T Consensus 107 lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 107 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp --CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHH
Confidence 999999888774 366679999999999999999999999976 3788899999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ-- 238 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 238 (287)
+.++ .++.+|..++.+|...|+++.|......+. ..| .-...++..|.+.|.+++|..+++......
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~a--d~l~~lv~~Yek~G~~eEai~lLe~aL~le~a 239 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAALGLERA 239 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCH--HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTC
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCH--hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHH
Confidence 9887 267888998899998888888865544322 233 334467788888888888888887775321
Q ss_pred --------------------------------CCc------chHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChh
Q 023133 239 --------------------------------IRP------SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 239 --------------------------------~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (287)
++| +...|.-+...|...++++.|.. .|.+..|+--...
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~ 316 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEG 316 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhH
Confidence 111 34456666777777777776655 4555555544444
Q ss_pred hH
Q 023133 281 DF 282 (287)
Q Consensus 281 ~~ 282 (287)
.|
T Consensus 317 ~f 318 (449)
T 1b89_A 317 QF 318 (449)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=2e-15 Score=116.01 Aligned_cols=220 Identities=11% Similarity=0.035 Sum_probs=192.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhh----cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAE----TNDIDLSFQILKDLLVSSRTLSSDCYTNFARA 77 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (287)
+..+...+...|++++|+..|++..+.+ ++.++..+...+.. .+++++|+..|++..+.+ +...+..+...
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLK--ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 3457778899999999999999998833 33688899999999 999999999999998875 67888889999
Q ss_pred Hhc----cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 023133 78 FIM----TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149 (287)
Q Consensus 78 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (287)
+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 998 999999999999999875 67788899999999 999999999999998865 5667778888888
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh-
Q 023133 150 R----VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK----IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR- 220 (287)
Q Consensus 150 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 220 (287)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 8 999999999999998874 56788889999999 999999999999999875 36678888899998
Q ss_pred ---cCCHHHHHHHHHHHHhCC
Q 023133 221 ---TGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 221 ---~g~~~~a~~~~~~~~~~~ 238 (287)
.+++++|.+.|++..+.+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 999999999999998764
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=7.2e-17 Score=127.20 Aligned_cols=272 Identities=12% Similarity=0.093 Sum_probs=207.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHh----cCCC-CHHHHHHH
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLLVS----SRTL-SSDCYTNF 74 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 74 (287)
.....+...|++++|...|++..+.++..+ ..+..+...+...|++++|...+++.... +..| ....+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 356778899999999999999988766543 46788899999999999999999987643 1122 24567788
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCC-C----cHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQIASP-E----SIIVVNRIIFAFAKSRQ--------------------IEKALLIFDHI 129 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~ 129 (287)
...+...|++++|...+++..+.... + ...++..+...|...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 88999999999999999987654211 1 24478889999999999 99999998876
Q ss_pred hcC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCchHHHHHHHHHH
Q 023133 130 KGL----KCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV-PD----FISYNTLLNNLRKIRRLDLCLIYFREM 199 (287)
Q Consensus 130 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 199 (287)
.+. +..+ ...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 432 1111 2346788889999999999999999987643110 11 237888889999999999999999988
Q ss_pred hhC----CCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 200 GES----GIKP-DLLTYTALIDSFGRTGNIEESLRLFNDMKQQ----QIR-PSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 200 ~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.+. +..+ ...++..+...+...|++++|...+++..+. +-. ....++..+...+...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 643 1111 1457788899999999999999999988753 111 12447788899999999999999999999
Q ss_pred hhcCCC
Q 023133 270 NSSLSD 275 (287)
Q Consensus 270 ~~~~~~ 275 (287)
.+..+.
T Consensus 330 ~~~~~~ 335 (338)
T 3ro2_A 330 LEISRE 335 (338)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 887654
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8.8e-15 Score=114.42 Aligned_cols=224 Identities=10% Similarity=0.038 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 023133 50 DLSFQILKDLLVSSRTLSSDCYTNFARAFI-------MTDDC-------TQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (287)
++|..+|++.+... +.+...|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888877653 445667776666654 34775 8888888888873224566788888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCC-Hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-hcCchHHH
Q 023133 116 SRQIEKALLIFDHIKGLKCKPD-LI-TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLR-KIRRLDLC 192 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 192 (287)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 89999999999888875 454 33 788888888888899999999988887643 24444543333322 36889999
Q ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCc--chHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ-IRP--SIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++..+.. +.| ....|..++....+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998887652 3356778888888888899999999999988752 354 3567888888888889999999999999
Q ss_pred hhcCCCCCC
Q 023133 270 NSSLSDLAG 278 (287)
Q Consensus 270 ~~~~~~~~~ 278 (287)
.+..|+.+.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 888887553
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.75 E-value=1.6e-16 Score=128.76 Aligned_cols=272 Identities=12% Similarity=0.077 Sum_probs=209.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHhc----CCC-CHHHHHH
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP----NAYNCVLVASAETNDIDLSFQILKDLLVSS----RTL-SSDCYTN 73 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~ 73 (287)
......+...|++++|...|++..+.++..+ .++..+...+...|++++|...+++..... ..| ...++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3466788899999999999999988766543 468889999999999999999999876431 122 2456777
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIAS-----PESIIVVNRIIFAFAKSRQ--------------------IEKALLIFDH 128 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~ 128 (287)
+...+...|++++|...+++..+... .....++..+...|...|+ +++|...+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 88899999999999999998875421 1124578889999999999 9999999887
Q ss_pred HhcC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHhcCchHHHHHHHHH
Q 023133 129 IKGL----KCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEAGV-VPD----FISYNTLLNNLRKIRRLDLCLIYFRE 198 (287)
Q Consensus 129 ~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 198 (287)
..+. +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6432 2112 234678888999999999999999999765311 112 23788889999999999999999998
Q ss_pred HhhC----CCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-chHhHHHHHHHHHhcCChHHHHHHHHH
Q 023133 199 MGES----GIKPD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQ----QIRP-SIYVYRSLIDNLKKMGKVDLAMTIFEE 268 (287)
Q Consensus 199 ~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (287)
..+. +..+. ..++..+...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8643 11111 457888999999999999999999998753 1111 155788888999999999999999999
Q ss_pred HhhcCC
Q 023133 269 MNSSLS 274 (287)
Q Consensus 269 ~~~~~~ 274 (287)
..+..+
T Consensus 333 al~~~~ 338 (406)
T 3sf4_A 333 HLEISR 338 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 866543
No 51
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.74 E-value=9.3e-16 Score=126.98 Aligned_cols=268 Identities=10% Similarity=-0.022 Sum_probs=177.9
Q ss_pred cCChhHHHHHHHHHhhcCCCCchhHHHHHHH---HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh----ccCCh
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNAYNCVLVA---SAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI----MTDDC 84 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 84 (287)
.+++++|++.|++..+.++..+..+..+..+ +...++.++|++.+++.++.. +.+...+..+...+. ..+++
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHH
Confidence 3578999999999998887666566555554 445677889999999988763 335556655554444 34678
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc-------------
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV------------- 151 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------- 151 (287)
++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+..++..+..+|...
T Consensus 230 ~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~ 307 (472)
T 4g1t_A 230 GEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMY 307 (472)
T ss_dssp CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 89999999998876 6778889999999999999999999999988763 33455666666555332
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHH--HHHHHHH-HHHhcC
Q 023133 152 ------GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL--TYTALID-SFGRTG 222 (287)
Q Consensus 152 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g 222 (287)
+.++.|...++...+.... +..++..+...+...|++++|...|++..+....+... .+..+.. .+...|
T Consensus 308 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 308 GKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCC
Confidence 2356788888888776433 56778889999999999999999999998764333221 2223332 245779
Q ss_pred CHHHHHHHHHHHHhCC-----------------------CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 223 NIEESLRLFNDMKQQQ-----------------------IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 223 ~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
++++|+..|++..+.. -+.+..+|..+...+...|++++|.+.|+++.+..|..|..
T Consensus 387 ~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 387 CEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 9999999998876532 12346788899999999999999999999999999999888
Q ss_pred hhHh
Q 023133 280 KDFK 283 (287)
Q Consensus 280 ~~~~ 283 (287)
.+|.
T Consensus 467 ~~~~ 470 (472)
T 4g1t_A 467 SSWN 470 (472)
T ss_dssp ----
T ss_pred hhcC
Confidence 7765
No 52
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=1.3e-13 Score=114.72 Aligned_cols=248 Identities=9% Similarity=0.030 Sum_probs=161.3
Q ss_pred HHHHHHh----cCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhh----cCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023133 5 YIEKLCK----AGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAE----TNDIDLSFQILKDLLVSSRTLSSDCYTNFAR 76 (287)
Q Consensus 5 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 76 (287)
|...|.. .+++++|...|++..+.+. +.++..|...|.. .+++++|...|++..+.| +...+..+..
T Consensus 45 lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 119 (490)
T 2xm6_A 45 LGYRYFQGNETTKDLTQAMDWFRRAAEQGY--TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGV 119 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 4445555 6777888888877766542 2467777777777 777888888887776654 4555666666
Q ss_pred HHhc----cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 023133 77 AFIM----TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148 (287)
Q Consensus 77 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (287)
.+.. .+++++|..+|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|
T Consensus 120 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 120 MYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 6666 667777888777777654 34556666666766 667777777777776643 455666666666
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 149 GR----VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK----IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 149 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.| +...+..+...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQ 267 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHC
Confidence 66 677777777777776654 44555566666654 566777777777766553 34455555555655
Q ss_pred ----cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhc-----CChHHHHHHHHHHhhc
Q 023133 221 ----TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKM-----GKVDLAMTIFEEMNSS 272 (287)
Q Consensus 221 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~ 272 (287)
.++.++|.++|++..+.| +...+..+...+... +++++|..+|+++.+.
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 666777777777666553 334455555555555 6666666666666544
No 53
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=7.4e-15 Score=121.56 Aligned_cols=274 Identities=11% Similarity=-0.009 Sum_probs=161.5
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhc-------CCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhc------CC
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDK-------NIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSS------RT 65 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~ 65 (287)
+||.|...+...|++++|++.|++..+. ...+. .+|+.+..+|...|++++|...+++..+.. ..
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3788999999999999999999876432 11222 678999999999999999999998876531 11
Q ss_pred C-CHHHHHHHHHHHhc--cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHhcCCCCCCHh
Q 023133 66 L-SSDCYTNFARAFIM--TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA---KSRQIEKALLIFDHIKGLKCKPDLI 139 (287)
Q Consensus 66 ~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (287)
+ ...++..+..++.. .+++++|...|++..+.. |.+...+..+..++. ..++.++|++.+++..+.. +.+..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchH
Confidence 1 24456555555544 457889999999988876 344555555544432 3445556666666555432 22333
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCC-----------
Q 023133 140 TYNIVLDILGR----VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGI----------- 204 (287)
Q Consensus 140 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------- 204 (287)
.+..+...+.. .+++++|...+++....... +..++..+...|...|++++|...+.+..+...
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 289 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 34333333322 34455566666555544322 444555555556666666666665555544310
Q ss_pred -----------------------------------------cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch
Q 023133 205 -----------------------------------------KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243 (287)
Q Consensus 205 -----------------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 243 (287)
+.+..++..+...|...|++++|.+.|++..+....+..
T Consensus 290 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~ 369 (472)
T 4g1t_A 290 CYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369 (472)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence 112223445566667777777777777777765333222
Q ss_pred H--hHHHHHH-HHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 244 Y--VYRSLID-NLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 244 ~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
. .+..+.. .....|++++|...|++.....|+..
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 1 2222222 23456777777777777777766553
No 54
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=2.5e-14 Score=111.84 Aligned_cols=219 Identities=9% Similarity=-0.004 Sum_probs=178.5
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHhh-------cCCh-------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 16 SAAVRLLQSLRDKNIFLPNAYNCVLVASAE-------TNDI-------DLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
++|..+|++.....+..+..|..++..+.. .|++ ++|..+|++.++.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 688899999998877666888888887763 5886 89999999998731233566888999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH-hcCCHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESII-VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG-RVGRVNDMLN 159 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~ 159 (287)
|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|..
T Consensus 113 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999864 33444 89999999999999999999999998864 334445544333322 3799999999
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC-CcC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 160 EFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESG-IKP--DLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+|+...+.... +...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999876433 67889999999999999999999999999863 344 467888899999999999999999999987
Q ss_pred C
Q 023133 237 Q 237 (287)
Q Consensus 237 ~ 237 (287)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 5
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.72 E-value=4.3e-15 Score=107.13 Aligned_cols=170 Identities=11% Similarity=0.047 Sum_probs=97.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 023133 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181 (287)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 181 (287)
+..+|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 34555556666666666666666666555442 234445555566666666666666666665554332 3445555555
Q ss_pred HHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHH
Q 023133 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDL 261 (287)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (287)
.+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|++.|++..+.. +.+...+..+..++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5566666666666666655442 3345555566666666666666666666666542 2344556666666666666666
Q ss_pred HHHHHHHHhhcCCC
Q 023133 262 AMTIFEEMNSSLSD 275 (287)
Q Consensus 262 a~~~~~~~~~~~~~ 275 (287)
|.+.|+++.+..|+
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 66666666665553
No 56
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=3e-13 Score=112.62 Aligned_cols=248 Identities=13% Similarity=0.094 Sum_probs=125.2
Q ss_pred HHHHHHh----cCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhh----cCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023133 5 YIEKLCK----AGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAE----TNDIDLSFQILKDLLVSSRTLSSDCYTNFAR 76 (287)
Q Consensus 5 li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 76 (287)
|...|.. .+++++|.+.|++..+.+ .+.++..|...|.. .+++++|+..|++..+.| +...+..+..
T Consensus 81 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 155 (490)
T 2xm6_A 81 LGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGD 155 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 4444555 566666666666655543 22345555555555 556666666666655443 3344444544
Q ss_pred HHhc----cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 023133 77 AFIM----TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK----SRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148 (287)
Q Consensus 77 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (287)
.|.. .+++++|.++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|
T Consensus 156 ~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 229 (490)
T 2xm6_A 156 AYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMY 229 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 4444 455555665555555543 34444455555554 455555555555554432 233333444444
Q ss_pred H------------------------------------h----cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--
Q 023133 149 G------------------------------------R----VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI-- 186 (287)
Q Consensus 149 ~------------------------------------~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 186 (287)
. . .+++++|...|+...+.| +...+..+...|...
T Consensus 230 ~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 230 YFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCC
Confidence 3 3 444445555444444332 233444444444444
Q ss_pred ---CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh----c
Q 023133 187 ---RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG---NIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK----M 256 (287)
Q Consensus 187 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 256 (287)
++.++|...+++..+.| +...+..+...|...| ++++|.++|++..+.| +...+..+...|.. .
T Consensus 307 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 380 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVK 380 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 45555555555554443 2334444444444434 4555555555555542 44455555555555 5
Q ss_pred CChHHHHHHHHHHhhc
Q 023133 257 GKVDLAMTIFEEMNSS 272 (287)
Q Consensus 257 g~~~~a~~~~~~~~~~ 272 (287)
+++++|.++|++..+.
T Consensus 381 ~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 381 KDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 6666666666666543
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=2.6e-15 Score=124.28 Aligned_cols=213 Identities=12% Similarity=0.094 Sum_probs=181.7
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 49 IDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC-TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFD 127 (287)
Q Consensus 49 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 127 (287)
+++++..+++.... .+.+...+..+..++...|++ ++|++.|++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55666666665543 234678888899999999999 99999999999886 5678899999999999999999999999
Q ss_pred HHhcCCCCCCHhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--------CchH
Q 023133 128 HIKGLKCKPDLITYNIVLDILGRV---------GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI--------RRLD 190 (287)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 190 (287)
+..+. .|+...+..+..++... |++++|...|++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99987 47778889999999999 9999999999999887543 678899999999998 9999
Q ss_pred HHHHHHHHHhhCCCc---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHH
Q 023133 191 LCLIYFREMGESGIK---PDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (287)
+|...|++..+.. + .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998863 3 478899999999999999999999999998753 3356678888889999999999987554
Q ss_pred H
Q 023133 268 E 268 (287)
Q Consensus 268 ~ 268 (287)
+
T Consensus 317 ~ 317 (474)
T 4abn_A 317 K 317 (474)
T ss_dssp T
T ss_pred c
Confidence 3
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.1e-16 Score=123.36 Aligned_cols=241 Identities=12% Similarity=0.102 Sum_probs=169.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhc------C-C
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVS-------SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQI------A-S 99 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~ 99 (287)
.++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 67888899999999999999999998763 22334566778888899999999999999888764 2 2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 023133 100 PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL------KCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEA----- 167 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 167 (287)
+....++..+...|...|++++|...+++..+. +..| ....+..+...+...|++++|..+++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 345678888999999999999999999887653 2122 3446788888999999999999999998664
Q ss_pred -CCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhC-------CCcCC-------HHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 168 -GVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGES-------GIKPD-------LLTYTALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 168 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~ 231 (287)
+..| ...++..+...+...|++++|...++++.+. ...+. ...+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 2122 3456788888999999999999999988753 11111 112223333444555666666677
Q ss_pred HHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 232 NDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
...... .+.+..++..+..+|.+.|++++|.++|+++.+..|.
T Consensus 268 ~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 766653 2345678888999999999999999999999876553
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.70 E-value=1.4e-14 Score=104.42 Aligned_cols=167 Identities=10% Similarity=0.089 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 023133 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD 146 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 146 (287)
+...|..+...+...|++++|++.|++.++.. |.+..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44556666666667777777777777766665 4556666667777777777777777776665543 234445556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
.+...++++.|...+.+..+.... +...+..+...+.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666777777777777776655332 55666666777777777777777777766653 3455667777777777777777
Q ss_pred HHHHHHHHHhC
Q 023133 227 SLRLFNDMKQQ 237 (287)
Q Consensus 227 a~~~~~~~~~~ 237 (287)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777653
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.68 E-value=4.7e-15 Score=122.73 Aligned_cols=215 Identities=7% Similarity=-0.026 Sum_probs=182.8
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCCh-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDI-DLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEE 93 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 93 (287)
+++++..++......+.....+..+...+...|++ ++|++.|++.++.. +-+...+..+..++...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677777776665543338899999999999999 99999999998864 34578899999999999999999999999
Q ss_pred HHhcCCCCcHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc--------CCHHH
Q 023133 94 VVQIASPESIIVVNRIIFAFAKS---------RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV--------GRVND 156 (287)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 156 (287)
..+.. |+...+..+...|... |++++|...|++..+.. +.+...|..+..+|... |++++
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99875 5578999999999999 99999999999998764 44677899999999988 99999
Q ss_pred HHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 157 MLNEFASMKEAGVV--PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 157 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999886431 277889999999999999999999999998764 446678888999999999999998766543
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.9e-16 Score=121.89 Aligned_cols=234 Identities=11% Similarity=0.091 Sum_probs=168.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhc-------CCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHh------cC-CC
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDK-------NIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVS------SR-TL 66 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~ 66 (287)
+..+...+...|++++|...|+++.+. +.... .++..+...+...|++++|...+++.... +. +.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 567888999999999999999998763 22122 78899999999999999999999998764 21 22
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhc------C-CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC------C
Q 023133 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQI------A-SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL------K 133 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 133 (287)
...++..+...+...|++++|...++++.+. + .+....++..+...+...|++++|.+.++++.+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567788889999999999999999998765 2 2334567888999999999999999999988653 1
Q ss_pred CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCChh-------HHHHHHHHHHhcCchHHHHHHHHH
Q 023133 134 CKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEA-------GVVPDFI-------SYNTLLNNLRKIRRLDLCLIYFRE 198 (287)
Q Consensus 134 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 198 (287)
..| ...++..+..+|...|++++|...++++.+. ...+... .+..+...+...+.+.++...+..
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 122 3457888999999999999999999998753 1122211 122223334445556666667766
Q ss_pred HhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 199 MGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
..... +.+..++..+..+|...|++++|.+.|++..+
T Consensus 270 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 270 CKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66542 34556788999999999999999999999875
No 62
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=3.5e-13 Score=113.27 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=107.0
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCchHHHHHHHHH
Q 023133 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD--FISYNTLLNNLRKIRRLDLCLIYFRE 198 (287)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 198 (287)
+|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+.++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77777777765211334667777888888888888888888888775 333 24677777777778888888888888
Q ss_pred HhhCCCcCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 199 MGESGIKPDLLTYTALIDS-FGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
..+.. +.+...|...... +...|+.++|.++|++..+.. +.+...|..++..+.+.|+.++|..+|+++....|..|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 87652 2222223222222 335788888888888887652 33567888888888888999999999998888766554
No 63
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.67 E-value=1.1e-13 Score=111.17 Aligned_cols=270 Identities=8% Similarity=-0.021 Sum_probs=196.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCc-----hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC-CCH----HHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLP-----NAYNCVLVASAETNDIDLSFQILKDLLVSSRT-LSS----DCYTNF 74 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l 74 (287)
....+...|++++|...+++.....+..+ .++..+...+...|++++|...+++....... ++. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 44567789999999999999877654332 25677778889999999999999998754211 122 235667
Q ss_pred HHHHhccCChHHHHHHHHHHHhc----CCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--C--CHhhHHH
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQI----ASP--E-SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK--P--DLITYNI 143 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~ 143 (287)
...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 78888999999999999988654 221 2 3456777888999999999999999887653211 1 2346778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh-hHHH-----HHHHHHHhcCchHHHHHHHHHHhhCCCcC---CHHHHHHH
Q 023133 144 VLDILGRVGRVNDMLNEFASMKEAGVVPDF-ISYN-----TLLNNLRKIRRLDLCLIYFREMGESGIKP---DLLTYTAL 214 (287)
Q Consensus 144 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l 214 (287)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 888899999999999999998654222211 1222 23344778999999999999987643211 13356678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCcch-HhHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQQ----QIRPSI-YVYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++.....+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 88999999999999999988643 322233 3667778888999999999999998866543
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=2.8e-14 Score=102.55 Aligned_cols=174 Identities=12% Similarity=0.086 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4556677778888888888888888877653 34566777888888888888888888888877643 356777888888
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHH
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLA 262 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 262 (287)
+...|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 888888999998888887653 4567788888888899999999999999888753 44567888888889999999999
Q ss_pred HHHHHHHhhcCCCCCChh
Q 023133 263 MTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~ 280 (287)
.+.++++....|+.+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 164 LPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHcCCCchhhH
Confidence 999999888777665443
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=6.9e-14 Score=112.72 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=178.2
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhcC-CC----CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCC------CCcHHHHH
Q 023133 39 VLVASAETNDIDLSFQILKDLLVSSR-TL----SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS------PESIIVVN 107 (287)
Q Consensus 39 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 107 (287)
....+...|++++|+..+++..+.-. .+ ...++..+...+...|+++.|...+++..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 56677889999999999999976411 12 235778888999999999999999998876421 12346788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCChhHHH
Q 023133 108 RIIFAFAKSRQIEKALLIFDHIKGL----KCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKEA----GV-VPDFISYN 177 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 177 (287)
.+...|...|++++|...|++..+. +-.+ ...++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999887643 1111 1237888999999999999999999998762 22 33456788
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhC----CCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcc-hHhHHHH
Q 023133 178 TLLNNLRKIRRLDLCLIYFREMGES----GIKPDLLTYTALIDSFGRTGN---IEESLRLFNDMKQQQIRPS-IYVYRSL 249 (287)
Q Consensus 178 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l 249 (287)
.+...+.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999988653 112223346678888889999 77777777765 33333 4567788
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 250 IDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 250 i~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
...|...|++++|.++|++......
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999999966543
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=4e-14 Score=115.01 Aligned_cols=241 Identities=9% Similarity=0.026 Sum_probs=186.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhcC-----CCCcHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS----DCYTNFARAFIMTDDCTQLLIFIEEVVQIA-----SPESII 104 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~ 104 (287)
..+..+...+...|++++|+..|++.++.... +. ..+..+...+...|++++|...+++..+.. .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45666778889999999999999999986422 33 467788899999999999999999887541 134557
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC-CCCHhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIKGL----KC-KPDLITYNIVLDILGRVGR-----------------VNDMLNEFA 162 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 162 (287)
++..+...|...|++++|...+++..+. +- +....++..+...|...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 8888999999999999999999887643 11 1234478888899999999 999999998
Q ss_pred HHHHc----CCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCC-cCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 163 SMKEA----GVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGI-KPD----LLTYTALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 163 ~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 232 (287)
+..+. +..+ ...++..+...+...|++++|...+++..+... .++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 86542 1111 235778888999999999999999998875311 112 2377888999999999999999999
Q ss_pred HHHhCC----CC-cchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 233 DMKQQQ----IR-PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 233 ~~~~~~----~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
+..+.. .. ....++..+...+...|++++|..+++++....+.
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 887531 11 12567888899999999999999999998765443
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.62 E-value=1.1e-13 Score=103.21 Aligned_cols=206 Identities=9% Similarity=0.001 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHH
Q 023133 66 LSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVL 145 (287)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 145 (287)
.++..+......+...|++++|...|++.++...+++...+..+..++...|++++|...|++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888899999999999999999999998744777888889999999999999999999998774 33566888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC---HHHHHHHH
Q 023133 146 DILGRVGRVNDMLNEFASMKEAGVVPDF-------ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD---LLTYTALI 215 (287)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 215 (287)
.+|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999886432 34 45778888899999999999999999886 454 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHh
Q 023133 216 DSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFK 283 (287)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (287)
.+|...| ..+++++...+ ..+...+.... ....+.+++|...|++..+..|+++.....+
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 7776544 44556665542 23344444443 3345678999999999999999887655443
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.61 E-value=1.7e-13 Score=110.39 Aligned_cols=229 Identities=10% Similarity=0.056 Sum_probs=176.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhc----CCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC------CHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDK----NIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTL------SSDCYT 72 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 72 (287)
....+...|++++|...|++.... +..+. .++..+...+...|+++.|+..+++..+..... ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 456678899999999999998764 22221 688999999999999999999999987642111 235778
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC-CCCHhhHH
Q 023133 73 NFARAFIMTDDCTQLLIFIEEVVQIAS-----PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL----KC-KPDLITYN 142 (287)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 142 (287)
.+..++...|++++|...+++..+... +....++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999998875421 112357888999999999999999999988762 22 23355788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCChhHHHHHHHHHHhcCc---hHHHHHHHHHHhhCCCcCC-HHHHHHH
Q 023133 143 IVLDILGRVGRVNDMLNEFASMKEA----GVVPDFISYNTLLNNLRKIRR---LDLCLIYFREMGESGIKPD-LLTYTAL 214 (287)
Q Consensus 143 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l 214 (287)
.+..++.+.|++++|...+++..+. +-+.....+..+...+...|+ .++|..++++.. ..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence 8999999999999999999987653 111122345677788888888 777777777652 2333 3467789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
...|...|++++|...+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 69
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=3.2e-14 Score=115.14 Aligned_cols=258 Identities=10% Similarity=-0.003 Sum_probs=193.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhc----CCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC-CC----HHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDK----NIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRT-LS----SDC 70 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 70 (287)
|..+...+...|++++|...|++.... +..+. .++..+...+...|++++|...+++....... ++ ..+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 566788999999999999999886443 22222 67888999999999999999999988754211 12 347
Q ss_pred HHHHHHHHhccCC--------------------hHHHHHHHHHHHhc----C-CCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 023133 71 YTNFARAFIMTDD--------------------CTQLLIFIEEVVQI----A-SPESIIVVNRIIFAFAKSRQIEKALLI 125 (287)
Q Consensus 71 ~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 125 (287)
+..+...+...|+ +++|...+++..+. + .+....++..+...|...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7788888999999 99999999887643 1 112345788899999999999999999
Q ss_pred HHHHhcCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCchHHHHHH
Q 023133 126 FDHIKGLKC-KPD----LITYNIVLDILGRVGRVNDMLNEFASMKEAGVV-PD----FISYNTLLNNLRKIRRLDLCLIY 195 (287)
Q Consensus 126 ~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 195 (287)
+++..+... .++ ..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 988764310 111 237888899999999999999999987643111 11 45778889999999999999999
Q ss_pred HHHHhhC----CCcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-cchHhHHHHHHHHHhcCCh
Q 023133 196 FREMGES----GIKP-DLLTYTALIDSFGRTGNIEESLRLFNDMKQQ----QIR-PSIYVYRSLIDNLKKMGKV 259 (287)
Q Consensus 196 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~ 259 (287)
+++..+. +..+ ...++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9988653 1111 1457888899999999999999999987643 212 2245677777788777765
No 70
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.61 E-value=7.3e-13 Score=101.44 Aligned_cols=255 Identities=11% Similarity=0.019 Sum_probs=182.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
|+-..-.|++..++.-... ..+..+ .....+.+++...|++.... ...|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc--
Confidence 3445567888888874333 233333 45555678888888877421 2334444444444333 322
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC-KPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
+...+++..+.+ +++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 678888887765 45566667889999999999999999999876642 13566788899999999999999999999
Q ss_pred HHHcCCCC-----ChhHHHHHHHHHHh--cC--chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 164 MKEAGVVP-----DFISYNTLLNNLRK--IR--RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 164 ~~~~~~~~-----~~~~~~~l~~~~~~--~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
|.+. .| +..+...+..++.. .| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9876 45 35666666666333 34 899999999999776 466444445555899999999999999977
Q ss_pred HhC-----C----CCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhhHhh
Q 023133 235 KQQ-----Q----IRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKDFKR 284 (287)
Q Consensus 235 ~~~-----~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 284 (287)
.+. + -+.+..+...+|......|+ +|.++++++.+..|+.|-...+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~ 294 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQE 294 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHH
Confidence 652 1 13466777677777677787 899999999999999887655543
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.61 E-value=2.2e-13 Score=97.79 Aligned_cols=164 Identities=12% Similarity=0.158 Sum_probs=100.8
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555666666666666666666655432 2345555666666666666666666666666554 34555666666666
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666665542 33455566666666666777777777666655532 24556666666666677777777
Q ss_pred HHHHHHhh
Q 023133 194 IYFREMGE 201 (287)
Q Consensus 194 ~~~~~~~~ 201 (287)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666654
No 72
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.60 E-value=2e-12 Score=115.34 Aligned_cols=210 Identities=12% Similarity=0.082 Sum_probs=108.3
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
.+|..+..++...|++++|++.|.+. -+...|..++.++.+.|++++|.+++....+.. ++..+.+.++.+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHH
Confidence 34555555555555555555555332 234444445555555555555555555444433 1111222344455
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...+++.|++++|.
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 5555544322221 1 233344444555555555555555555542 24555555555555555555
Q ss_pred HHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 194 IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
+.+++.. +..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++......
T Consensus 1242 EaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1242 DGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 5555431 334444444455555555444444332 22345566678888888899999999988887776
Q ss_pred CCCCC
Q 023133 274 SDLAG 278 (287)
Q Consensus 274 ~~~~~ 278 (287)
+...+
T Consensus 1311 raH~g 1315 (1630)
T 1xi4_A 1311 RAHMG 1315 (1630)
T ss_pred hhHhH
Confidence 55443
No 73
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1.3e-12 Score=109.92 Aligned_cols=220 Identities=10% Similarity=0.053 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 023133 51 LSFQILKDLLVSSRTLSSDCYTNFARAFIM-------TDDCT-------QLLIFIEEVVQIASPESIIVVNRIIFAFAKS 116 (287)
Q Consensus 51 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 116 (287)
++..+|++.+... +.+...|..++..+.+ .|+++ +|..++++.++.-.|.+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5667788887652 4467788888877775 68887 8999999998733356788999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCchHHHH
Q 023133 117 RQIEKALLIFDHIKGLKCKPDL--ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN-LRKIRRLDLCL 193 (287)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~ 193 (287)
|++++|..+|+++.+. .|+. ..|...+..+.+.|++++|..+|++..+.... +...|...... +...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999886 4542 47888999999999999999999999876322 33333332222 34689999999
Q ss_pred HHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCcc--hHhHHHHHHHHHhcCChHHHHHHHHHHh
Q 023133 194 IYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ-IRPS--IYVYRSLIDNLKKMGKVDLAMTIFEEMN 270 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 270 (287)
.+|++..+.. +.+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+..+++++.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998763 3467889999999999999999999999999763 2332 4478888888888999999999999998
Q ss_pred hcCCC
Q 023133 271 SSLSD 275 (287)
Q Consensus 271 ~~~~~ 275 (287)
+..|+
T Consensus 491 ~~~p~ 495 (530)
T 2ooe_A 491 TAFRE 495 (530)
T ss_dssp HHTHH
T ss_pred HHCch
Confidence 88884
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.58 E-value=5.9e-14 Score=110.42 Aligned_cols=240 Identities=9% Similarity=0.056 Sum_probs=183.0
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhc----CC-CCcHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLS----SDCYTNFARAFIMTDDCTQLLIFIEEVVQI----AS-PESIIV 105 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 105 (287)
.+......+...|++++|...+++..+... .+ ...+..+...+...|++++|...+++..+. +. +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 455667788999999999999999998642 23 356778889999999999999999987643 21 223567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCC----HhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 023133 106 VNRIIFAFAKSRQIEKALLIFDHIKGLKC-KPD----LITYNIVLDILGRVGR--------------------VNDMLNE 160 (287)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 160 (287)
+..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88899999999999999999988754210 112 3377888899999999 9999999
Q ss_pred HHHHHHc----CCCC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCC-cCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 023133 161 FASMKEA----GVVP-DFISYNTLLNNLRKIRRLDLCLIYFREMGESGI-KPD----LLTYTALIDSFGRTGNIEESLRL 230 (287)
Q Consensus 161 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~ 230 (287)
+++..+. +..| ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9886432 1111 234678888899999999999999998864310 112 23778888999999999999999
Q ss_pred HHHHHhC----CCCc-chHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 231 FNDMKQQ----QIRP-SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 231 ~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
+++..+. +..+ ...++..+...+...|++++|...++++....+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 9988743 1111 1557788889999999999999999998766543
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=1.1e-13 Score=119.37 Aligned_cols=163 Identities=9% Similarity=0.072 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (287)
..++.+..++.+.|++++|++.|++.++.. +.+..+++.+..+|.+.|++++|++.|++..+.. +-+...|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344445555555555555555555554443 3334445555555555555555555555444432 12233444444555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 023133 149 GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228 (287)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 228 (287)
.+.|++++|++.|++..+.... +...|..+..++...|++++|.+.|++..+.. +-+...+..+..++...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555544443221 33444444444444444444444444444432 122334444444444444444444
Q ss_pred HHHHHHH
Q 023133 229 RLFNDMK 235 (287)
Q Consensus 229 ~~~~~~~ 235 (287)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=3.2e-13 Score=116.46 Aligned_cols=164 Identities=10% Similarity=0.093 Sum_probs=139.4
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
.+|+.+...+.+.|++++|++.|++.++.. +-+..++..+..++.+.|++++|++.|++.++.. +.+..+|..+..+|
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 788999999999999999999999988763 3357788889999999999999999999998886 56788899999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL 193 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 193 (287)
.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.... +...+..+...+...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 99999999999999887764 345678899999999999999999999998886543 5678888999999999999998
Q ss_pred HHHHHHhh
Q 023133 194 IYFREMGE 201 (287)
Q Consensus 194 ~~~~~~~~ 201 (287)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.57 E-value=1.5e-13 Score=105.56 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=108.3
Q ss_pred HhcCChhHHHHHHHHHhhc-----CCC-Cc--hhHHHHHHHHhhcCChhHHHHHHHHHHHh------cC-CCCHHHHHHH
Q 023133 10 CKAGNVSAAVRLLQSLRDK-----NIF-LP--NAYNCVLVASAETNDIDLSFQILKDLLVS------SR-TLSSDCYTNF 74 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~-----~~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 74 (287)
...|++++|+..|++..+. +.. |. .++..+...+...|++++|+..+++.... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777766542 111 22 67888888888889999998888887754 11 2234567777
Q ss_pred HHHHhccCChHHHHHHHHHHHhcC-------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCC-CHhh
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQIA-------SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL------KCKP-DLIT 140 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 140 (287)
..++...|++++|...++++.+.. .+....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888776541 1334567777888888888888888888776543 1112 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
+..+..+|...|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67777777788888888888777654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=1.3e-12 Score=105.13 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=165.9
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-----C-Cc
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSR-TLS----SDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS-----P-ES 102 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~ 102 (287)
..+......+...|++++|+..+++...... .++ ..++..+...+...|+++.|...+++..+... . ..
T Consensus 102 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 102 YSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence 4677777778888888888888888875421 122 34667788888888898888888887765321 1 12
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCC
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGL----KCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKE-----AGVVPD 172 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~ 172 (287)
..+++.+...|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...+++..+ .... .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence 457778888888899999998888776542 2111 234677888888889999999998888765 3322 3
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcc-hH
Q 023133 173 FISYNTLLNNLRKIRRLDLCLIYFREMGES----GIKPDLLTYTALIDSFGRTGN---IEESLRLFNDMKQQQIRPS-IY 244 (287)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~ 244 (287)
..++..+...+.+.|++++|...+++..+. +-+.....+..+...+...++ +.+|+..+++. +..|+ ..
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHH
Confidence 667788888888999999999998887653 112223456666667777777 67777776652 23333 34
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
.+..+...|...|++++|...|+++..
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667788888899999999999888754
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.56 E-value=2.5e-13 Score=104.24 Aligned_cols=228 Identities=12% Similarity=0.080 Sum_probs=158.8
Q ss_pred hhcCChhHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhc------C-CCCcHHHHHHH
Q 023133 44 AETNDIDLSFQILKDLLVS-------SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQI------A-SPESIIVVNRI 109 (287)
Q Consensus 44 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 109 (287)
...|+++.|+..+++.++. ..+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888887777652 11224567888889999999999999999998765 2 23456788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcC------CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-ChhH
Q 023133 110 IFAFAKSRQIEKALLIFDHIKGL------KC-KPDLITYNIVLDILGRVGRVNDMLNEFASMKEA------GVVP-DFIS 175 (287)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 175 (287)
...|...|++++|...+++..+. .. +....++..+...|...|++++|...+++..+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988653 11 223557888999999999999999999998764 1122 3467
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhC-------CCcCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCc
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGES-------GIKPDL-LTYTALIDSFGRTGN------IEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~ 241 (287)
+..+...+...|++++|..++++..+. ...+.. ..+..+...+...+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999988753 112222 233333333333333 2222222222211 1123
Q ss_pred chHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 242 SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
...++..+...+...|++++|..+|+++.+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888999999999999999999998764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.55 E-value=2.9e-12 Score=95.47 Aligned_cols=192 Identities=6% Similarity=-0.013 Sum_probs=153.8
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+......+...|++++|+..|++.++...+++...+..+..++...|++++|...+++..+.. +.+..++..+...|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH
Confidence 68888999999999999999999999987654788888889999999999999999999999876 56788999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDL-------ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPD---FISYNTLLNNL 183 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 183 (287)
...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|++..+. .|+ ...+..+...+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 99999999999999998763 2334 45778888899999999999999999875 354 46677777777
Q ss_pred HhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 184 RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
...| ..+++++...+ ..+...|.... ....+.+++|...+++..+.
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 6444 44556665543 33445554443 33456789999999999875
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=1.6e-12 Score=104.60 Aligned_cols=228 Identities=10% Similarity=-0.015 Sum_probs=166.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCC----CCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC-C-----CHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNI----FLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRT-L-----SSDCYT 72 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 72 (287)
....+...|++++|+..|++...... .+. .++..+...+...|+++.|+..+++..+.... + ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999998765421 112 57888899999999999999999888754211 1 134677
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcC----CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCHhhHH
Q 023133 73 NFARAFIMTDDCTQLLIFIEEVVQIA----SP-ESIIVVNRIIFAFAKSRQIEKALLIFDHIKG-----LKCKPDLITYN 142 (287)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 142 (287)
.+..++...|++++|...+++..+.. .+ ....++..+...|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 78888999999999999998876531 11 2245778888999999999999999988865 32 23356778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCChhHHHHHHHHHHhcCc---hHHHHHHHHHHhhCCCcCC-HHHHHHH
Q 023133 143 IVLDILGRVGRVNDMLNEFASMKEAGV----VPDFISYNTLLNNLRKIRR---LDLCLIYFREMGESGIKPD-LLTYTAL 214 (287)
Q Consensus 143 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l 214 (287)
.+..++.+.|++++|...+++..+... +.....+..+...+...++ ..+|..++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 888899999999999999998876422 1123345556666777777 67777777652 22333 3466678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
...|...|++++|.+.|++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999998764
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.53 E-value=9.1e-13 Score=102.16 Aligned_cols=237 Identities=8% Similarity=-0.027 Sum_probs=155.6
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHhh--cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 023133 17 AAVRLLQSLRDKNIFLPNAYNCVLVASAE--TNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94 (287)
Q Consensus 17 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (287)
+|.+++.+..+.-......| .+ +.. .+++++|...|++. ...+...|++++|...|++.
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH
Confidence 56666666665543222222 22 222 12477888777776 33566778888888888877
Q ss_pred Hhc----CCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCC--HhhHHHHHHHHHhc-CCHHHHHHHHHH
Q 023133 95 VQI----ASPE-SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC---KPD--LITYNIVLDILGRV-GRVNDMLNEFAS 163 (287)
Q Consensus 95 ~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~ 163 (287)
.+. +.++ ...+|+.+..+|.+.|++++|+..+++..+... .+. ..+++.+..+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 654 2122 256788888888899999999888887754310 111 34677888888885 999999999888
Q ss_pred HHHcCCCC-C----hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 023133 164 MKEAGVVP-D----FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL------LTYTALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 164 ~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 232 (287)
..+..... + ..++..+...+.+.|++++|...|++..+....... ..|..+..++...|++++|...|+
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76532110 1 346778888889999999999999988875322211 156677788888999999999999
Q ss_pred HHHhCCCCcch------HhHHHHHHHHH--hcCChHHHHHHHHHHhhcCC
Q 023133 233 DMKQQQIRPSI------YVYRSLIDNLK--KMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 233 ~~~~~~~~~~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~ 274 (287)
+..+. .|+. ..+..++.++. ..+++++|+..|+++....|
T Consensus 224 ~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 224 EGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp GGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 88753 3332 12344555554 45678888888877765544
No 83
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.51 E-value=2.9e-11 Score=108.09 Aligned_cols=234 Identities=13% Similarity=0.124 Sum_probs=182.4
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
+|..+..++...|++++|++.|.+. ..+..|..++.++.+.|++++|++.|...++.. +++...+.++.+|++
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh
Confidence 4788999999999999999999764 122589999999999999999999999887754 333333458899999
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.++++....+. + .++...|..+...|...|++++|...|... ..|..+..++.+.|++++|.+.
T Consensus 1180 l~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 99988644442 2 345567778999999999999999999985 3899999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR 240 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 240 (287)
+++. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...... +
T Consensus 1244 arKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-r 1311 (1630)
T 1xi4_A 1244 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-R 1311 (1630)
T ss_pred HHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-h
Confidence 9876 26689999999999999999998876643 3455667789999999999999999998887543 3
Q ss_pred cchHhHHHHHHHHHhc--CChHHHHHHHHHH
Q 023133 241 PSIYVYRSLIDNLKKM--GKVDLAMTIFEEM 269 (287)
Q Consensus 241 ~~~~~~~~li~~~~~~--g~~~~a~~~~~~~ 269 (287)
-....|.-+...+++. ++..++.++|..-
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~r 1342 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSR 1342 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 3444565555555543 4455555555543
No 84
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=3.1e-11 Score=99.30 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHhccC---ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCCHh
Q 023133 67 SSDCYTNFARAFIMTD---DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS----RQIEKALLIFDHIKGLKCKPDLI 139 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~ 139 (287)
++..+..+...+...| +.++|.+.|++..+.| +++...+..+...|... +++++|...|++.. . -+..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~ 249 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPA 249 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHH
Confidence 3346666777777777 7778888888887777 45555556666666554 57888888888776 2 3444
Q ss_pred hHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-----chHHHHHHHHHHhhCCCcCCHHHH
Q 023133 140 TYNIVLDI-L--GRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR-----RLDLCLIYFREMGESGIKPDLLTY 211 (287)
Q Consensus 140 ~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~ 211 (287)
.+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|...|++.. .| +...+
T Consensus 250 a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~ 321 (452)
T 3e4b_A 250 SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAAD 321 (452)
T ss_dssp HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHH
Confidence 55555555 3 45778888888888877765 5566666666666 44 7888888887776 33 55566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh----cCChHHHHHHHHHHhhcC
Q 023133 212 TALIDSFGR----TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK----MGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 212 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 273 (287)
..|...|.. ..++++|.++|++..+.| +......|...|.. ..+.++|..+|+......
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 666666665 347888888888887765 33444455555543 347778888887775544
No 85
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=3e-11 Score=99.38 Aligned_cols=157 Identities=10% Similarity=0.038 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCChhH
Q 023133 103 IIVVNRIIFAFAKSR---QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV----GRVNDMLNEFASMKEAGVVPDFIS 175 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~ 175 (287)
+..+..+...|.+.| +.++|++.|++..+.| +++...+..+...|... +++++|...|+... .| +...
T Consensus 176 ~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 176 DICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 337788888898899 8999999999998887 45666656777777654 68999999999987 43 4566
Q ss_pred HHHHHHH-H--HhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCcchHhHH
Q 023133 176 YNTLLNN-L--RKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG-----NIEESLRLFNDMKQQQIRPSIYVYR 247 (287)
Q Consensus 176 ~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~ 247 (287)
+..+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|.++|++.. .| +...+.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHH
Confidence 6666666 4 56889999999999998876 6667777877777 45 9999999999887 43 566677
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhc
Q 023133 248 SLIDNLKK----MGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 248 ~li~~~~~----~g~~~~a~~~~~~~~~~ 272 (287)
.+...|.. ..++++|..+|++..+.
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 77777765 34899999999998664
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=5.6e-11 Score=95.28 Aligned_cols=240 Identities=11% Similarity=0.016 Sum_probs=172.2
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHhcCC---CC--cHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD----CYTNFARAFIMTDDCTQLLIFIEEVVQIAS---PE--SIIV 105 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~ 105 (287)
........+...|++++|...+++........+.. .+..+...+...|++++|...+++..+... .+ ...+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34455567778999999999999988764222322 455667788889999999999998865421 11 1234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--Chh
Q 023133 106 VNRIIFAFAKSRQIEKALLIFDHIKGL----KCK--PD-LITYNIVLDILGRVGRVNDMLNEFASMKEAGVV--P--DFI 174 (287)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~ 174 (287)
+..+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+.... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 677888899999999999999887542 221 22 345667888899999999999999998764322 1 235
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCc---chHh
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD--LLTYT----ALIDSFGRTGNIEESLRLFNDMKQQQIRP---SIYV 245 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~ 245 (287)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677788889999999999999998864311111 11111 23345779999999999999887643211 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 246 YRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
+..+...+...|++++|...++++....+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999866543
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.46 E-value=1.4e-11 Score=93.80 Aligned_cols=192 Identities=8% Similarity=-0.030 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CC-CHhhH
Q 023133 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPES---IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC-KP-DLITY 141 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~ 141 (287)
+...+..+...+.+.|++++|...|+++++.. |.+ ..++..+..+|.+.|++++|...|++..+... .| ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 45556666677777777777777777777664 223 55666777777777777777777777765421 11 13345
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHH
Q 023133 142 NIVLDILGR--------VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTA 213 (287)
Q Consensus 142 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (287)
..+..++.. .|++++|...|+++.+.... +......+... ..+... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 566666666 77777777777777665321 11222111110 000000 0012456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC--cchHhHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCCC
Q 023133 214 LIDSFGRTGNIEESLRLFNDMKQQQIR--PSIYVYRSLIDNLKKM----------GKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 214 l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
+...|...|++++|+..|+++.+.... .....+..+..++... |++++|...|+++.+..|+.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 777888899999999999998865211 1245667777777765 8889999999999988887764
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.45 E-value=1.5e-11 Score=83.18 Aligned_cols=132 Identities=13% Similarity=0.160 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445555566666666666666666554322 44555556666666666666666666665543 3345556666666777
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 221 TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++....|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777777766542 234556666677777777777777777777665553
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=3.5e-11 Score=93.20 Aligned_cols=212 Identities=9% Similarity=0.038 Sum_probs=157.5
Q ss_pred ChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHh----cCCCC-HHHHHHHHHHHhccCChHHHH
Q 023133 14 NVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVS----SRTLS-SDCYTNFARAFIMTDDCTQLL 88 (287)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~ 88 (287)
++++|...|++. ...|...|++++|...|.+.... |.++. ..+|+.+..++...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888887776 44677889999999999988654 21222 468888999999999999999
Q ss_pred HHHHHHHhcCC---CC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcCCC---CC-C-HhhHHHHHHHHHhcCCHHHH
Q 023133 89 IFIEEVVQIAS---PE--SIIVVNRIIFAFAKS-RQIEKALLIFDHIKGLKC---KP-D-LITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 89 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~---~~-~-~~~~~~l~~~~~~~~~~~~a 157 (287)
..+++.++... .+ ...+++.+...|... |++++|+..|++..+... .+ . ..+++.+...+.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99998876431 11 146888999999996 999999999998865310 01 1 34688899999999999999
Q ss_pred HHHHHHHHHcCCCCChh------HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH------HHHHHHHHHHH--hcCC
Q 023133 158 LNEFASMKEAGVVPDFI------SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL------LTYTALIDSFG--RTGN 223 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~ 223 (287)
+..|++..+........ .|..+..++...|++++|...+++..+. .|+. ..+..++.++. ..++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 99999998865432221 5677888899999999999999998864 3332 13445666665 4577
Q ss_pred HHHHHHHHHHHHhCCCCcch
Q 023133 224 IEESLRLFNDMKQQQIRPSI 243 (287)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~ 243 (287)
+++|++.|+.+.+ +.|+.
T Consensus 256 ~~~A~~~~~~~~~--l~~~~ 273 (292)
T 1qqe_A 256 LSEHCKEFDNFMR--LDKWK 273 (292)
T ss_dssp HHHHHHHHTTSSC--CCHHH
T ss_pred HHHHHHHhccCCc--cHHHH
Confidence 9999999987765 34444
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.42 E-value=3e-11 Score=91.98 Aligned_cols=189 Identities=12% Similarity=0.062 Sum_probs=125.6
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHhcCC--CCcHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS---SDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS--PESIIVVNR 108 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 108 (287)
..+..+...+.+.|++++|+..|+++++... .+ ...+..+..++...|++++|...|+++++..+ +....++..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 5666667777777777777777777766431 12 45666677777777777777777777776532 122455666
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHhcCCCCCC-HhhH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 023133 109 IIFAFAK--------SRQIEKALLIFDHIKGLKCKPD-LITY-----------------NIVLDILGRVGRVNDMLNEFA 162 (287)
Q Consensus 109 l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-~~~~-----------------~~l~~~~~~~~~~~~a~~~~~ 162 (287)
+..++.. .|++++|...|+++.+.. |+ .... ..+...|.+.|++++|+..|+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6777777 777777777777776542 32 2222 456778888999999999999
Q ss_pred HHHHcCCCC--ChhHHHHHHHHHHhc----------CchHHHHHHHHHHhhCCCcCCH----HHHHHHHHHHHhcCCHHH
Q 023133 163 SMKEAGVVP--DFISYNTLLNNLRKI----------RRLDLCLIYFREMGESGIKPDL----LTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 163 ~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 226 (287)
.+.+..... ....+..+..+|... |++++|...++++.+. .|+. .....+...+...+++++
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 887754321 234667777777766 8888999999888875 2332 345555556665555554
Q ss_pred H
Q 023133 227 S 227 (287)
Q Consensus 227 a 227 (287)
+
T Consensus 251 ~ 251 (261)
T 3qky_A 251 D 251 (261)
T ss_dssp C
T ss_pred h
Confidence 4
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.41 E-value=2.7e-11 Score=81.94 Aligned_cols=130 Identities=13% Similarity=0.185 Sum_probs=77.9
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (287)
+|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666665542 2244555555666666666666666666665554 344555666666666
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 115 KSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666665542 234555666666666666777776666666554
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.40 E-value=1.7e-11 Score=90.04 Aligned_cols=163 Identities=11% Similarity=0.051 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNR----------------IIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
..+......+...|++++|...|++..+.. |.+...|.. +..+|.+.|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334445556677888888888888887765 334455555 555566666666666666555544
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc--hHHHHHHHHHHhhCCCcCCHHH
Q 023133 133 KCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR--LDLCLIYFREMGESGIKPDLLT 210 (287)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 210 (287)
. +.+...+..+..++...|++++|...|++..+.... +..++..+...|...|. .+.+...+...... .|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhHH
Confidence 2 224445555555666666666666666665554322 34455555555443332 22333333333211 111122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+..+..++...|++++|...|++..+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22333344445555566666655554
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.40 E-value=6.1e-11 Score=87.07 Aligned_cols=170 Identities=11% Similarity=0.057 Sum_probs=99.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHhccCChHHHHHHHHHHHhcCC
Q 023133 36 YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTN----------------FARAFIMTDDCTQLLIFIEEVVQIAS 99 (287)
Q Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (287)
+......+.+.|++++|+..|++.+... +-+...+.. +..++...|++++|...+++.++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA- 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 3444455667777777777777776542 113344555 6666777777777777777777665
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhHHH
Q 023133 100 PESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR--VNDMLNEFASMKEAGVVPDFISYN 177 (287)
Q Consensus 100 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 177 (287)
|.+...+..+...|...|++++|...|++..+.. +.+..++..+..+|...|+ .+.+...+..... ..|....+.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 4566677777777777777777777777776653 2345566666666654443 2334444444321 122222333
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHH
Q 023133 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYT 212 (287)
Q Consensus 178 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 212 (287)
....++...|++++|...|++..+. .|+.....
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 3444555667777777777777665 46654433
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.40 E-value=2.7e-11 Score=104.70 Aligned_cols=173 Identities=9% Similarity=-0.040 Sum_probs=141.2
Q ss_pred hccCChHHHHHHHHHHH--------hcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 023133 79 IMTDDCTQLLIFIEEVV--------QIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 150 (287)
...|++++|++.+++.. +.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999988 443 5667888889999999999999999999988764 3466788889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHH
Q 023133 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRL 230 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 230 (287)
.|++++|...|++..+.... +...|..+..++.+.|++++ .+.|++..+.+ +.+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887543 66788889999999999999 99999998764 44677889999999999999999999
Q ss_pred HHHHHhCCCCcc-hHhHHHHHHHHHhcCC
Q 023133 231 FNDMKQQQIRPS-IYVYRSLIDNLKKMGK 258 (287)
Q Consensus 231 ~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 258 (287)
|++..+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998875 454 5667777777766554
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.39 E-value=1.7e-11 Score=105.88 Aligned_cols=174 Identities=10% Similarity=-0.054 Sum_probs=137.4
Q ss_pred HhcCChhHHHHHHHHHh--------hcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc
Q 023133 10 CKAGNVSAAVRLLQSLR--------DKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT 81 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (287)
...|++++|++.|++.. +.++.....+..+..++.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 57889999999999887 5444444788888999999999999999999988763 34677888888889999
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEF 161 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 161 (287)
|++++|...|+++.+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998886 5677888889999999999999 99998887764 345678888899999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCc
Q 023133 162 ASMKEAGVVPDFISYNTLLNNLRKIRR 188 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 188 (287)
++..+.+.. +...+..+..++...++
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 988775422 35667777777665444
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.37 E-value=2e-10 Score=85.43 Aligned_cols=190 Identities=10% Similarity=0.030 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh----h
Q 023133 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPE--SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI----T 140 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~ 140 (287)
+...+..+...+...|++++|...|+++.+..+.. ....+..+..+|.+.|++++|+..|+++.+.. |+.. .
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 34455566777888888999999988888764221 23567778888888889999988888887652 3322 3
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 141 YNIVLDILGR------------------VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 141 ~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
+..+..++.. .|++++|...|+++.+.... +...+...... + .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHH---
Confidence 4444444443 34555555555555543211 11111111000 0 000000
Q ss_pred CCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc----hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 203 GIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS----IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 203 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
......+...|.+.|++++|+..|+++.+. .|+ ...+..+..++.+.|++++|.+.++.+....|+...
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 001134567788999999999999999875 233 256888899999999999999999999998887654
Q ss_pred h
Q 023133 279 P 279 (287)
Q Consensus 279 ~ 279 (287)
.
T Consensus 220 ~ 220 (225)
T 2yhc_A 220 H 220 (225)
T ss_dssp C
T ss_pred h
Confidence 3
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.36 E-value=4.1e-10 Score=86.32 Aligned_cols=184 Identities=13% Similarity=0.006 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 52 SFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS-PESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 52 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
++..+++....+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877654 56666677888999999999999999999887763 2577888899999999999999999999998
Q ss_pred cCCCCC-----CHhhHHHHHHHH--Hh--cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 131 GLKCKP-----DLITYNIVLDIL--GR--VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 131 ~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
+. .| +..+...+..++ .. .+++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 355555666553 33 34899999999998765 34533444455589999999999999997765
Q ss_pred C-----C----CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchH
Q 023133 202 S-----G----IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIY 244 (287)
Q Consensus 202 ~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 244 (287)
. . -+.|..+...++......|+ +|.++++++.+. .|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 3 1 03355666566666666676 889999999985 45543
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.36 E-value=3.2e-09 Score=82.01 Aligned_cols=216 Identities=9% Similarity=0.023 Sum_probs=89.0
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHH----hcc---CChHH
Q 023133 16 SAAVRLLQSLRDKNIFLPNAYNCVLVASAETN--DIDLSFQILKDLLVSSRTLSSDCYTNFARAF----IMT---DDCTQ 86 (287)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~ 86 (287)
++|+.+++.+...++....+|+.-..++...+ +++++++.++.++..+.+ +..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 34555555555444433344444444444444 455555555555443211 222232222222 222 34444
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH--HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC------HHHHH
Q 023133 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE--KALLIFDHIKGLKCKPDLITYNIVLDILGRVGR------VNDML 158 (287)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~ 158 (287)
++.+++++.+.. +.+..+|+.-...+.+.|.++ ++++.++++.+.. +.+-..|+.-...+.+.+. +++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl 206 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEEL 206 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHH
Confidence 555555444443 334444444444444444444 4444444444432 2233344433333333333 44444
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHH-HHHHHHHHhhCC--CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDL-CLIYFREMGESG--IKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+.++.+....+. |...|+..-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|.++++.+.
T Consensus 207 ~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 207 NYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 444444443332 44444444444444443222 223333333211 02233344444444444444444444444444
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.35 E-value=7.4e-11 Score=99.99 Aligned_cols=154 Identities=9% Similarity=-0.057 Sum_probs=117.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNE 160 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 160 (287)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998875 5668889999999999999999999999998874 34577889999999999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhC
Q 023133 161 FASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT---GNIEESLRLFNDMKQQ 237 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 237 (287)
+++..+.... +...+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887533 67888999999999999999999999998764 44677888899999999 9999999999999876
Q ss_pred C
Q 023133 238 Q 238 (287)
Q Consensus 238 ~ 238 (287)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.35 E-value=2.1e-10 Score=85.31 Aligned_cols=181 Identities=13% Similarity=0.053 Sum_probs=104.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc---hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH--HHHHHHHHHH
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP---NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSS--DCYTNFARAF 78 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 78 (287)
.+...+.+.|++++|+..|+++....+..+ .++..+..++.+.|++++|+..|+++++....... ..+..+..++
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHH
Confidence 345567777888888888887777655433 46777777777788888888888777765322111 1333333333
Q ss_pred hccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh-h-----------------
Q 023133 79 IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI-T----------------- 140 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~----------------- 140 (287)
...+.. .+ ..+..+...+...|++++|...|+++.+. .|+.. .
T Consensus 89 ~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 89 MALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp HHHHC-------------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence 321100 00 00011111122234444455544444443 12211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHhhCC
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPD--FISYNTLLNNLRKIRRLDLCLIYFREMGESG 203 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 203 (287)
...+...|.+.|++++|...|+.+.+...... ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 12456678888999999999999877642211 2467778888999999999999998887663
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.34 E-value=1.3e-10 Score=89.73 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=136.4
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHH-H
Q 023133 99 SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISY-N 177 (287)
Q Consensus 99 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~ 177 (287)
.+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...++.+.... |+.... .
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHH
Confidence 35667778888899999999999999999988763 3456788889999999999999999999987654 444332 2
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-cchHhHHHHHHHHHhc
Q 023133 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR-PSIYVYRSLIDNLKKM 256 (287)
Q Consensus 178 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~ 256 (287)
.....+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+.... .+...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 23334667788888999999988764 556788999999999999999999999999976321 2267889999999999
Q ss_pred CChHHHHHHHHHHhh
Q 023133 257 GKVDLAMTIFEEMNS 271 (287)
Q Consensus 257 g~~~~a~~~~~~~~~ 271 (287)
|+.++|...|++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999988754
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.34 E-value=1.8e-09 Score=83.37 Aligned_cols=228 Identities=9% Similarity=0.001 Sum_probs=180.1
Q ss_pred hhcC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH----Hhc
Q 023133 44 AETN-DIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD--DCTQLLIFIEEVVQIASPESIIVVNRIIFAF----AKS 116 (287)
Q Consensus 44 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 116 (287)
.+.| ..++|+++.+.++..+ +-....|+.--.++...+ +++++++.++.++... |-+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 3444 4579999999999763 224566777777777788 9999999999999886 56677777666666 555
Q ss_pred ---CCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc---
Q 023133 117 ---RQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN--DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR--- 188 (287)
Q Consensus 117 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 188 (287)
+++++++..++.+.+.. +.+-.+|+.-.-++.+.|.++ ++++.++.+.+.++. |...|+.-...+.+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 78999999999998765 557788888888888888888 999999999998766 78888877777777776
Q ss_pred ---hHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCcchHhHHHHHHHHHhcCChHHH
Q 023133 189 ---LDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE-SLRLFNDMKQQQ--IRPSIYVYRSLIDNLKKMGKVDLA 262 (287)
Q Consensus 189 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a 262 (287)
++++++.++++.... +-|...|+.+-..+.+.|+..+ +..+..++.+.+ -..+...+..++..+.+.|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 889999999988775 5688899988888888887444 556777666432 134677889999999999999999
Q ss_pred HHHHHHHhh-cCCCC
Q 023133 263 MTIFEEMNS-SLSDL 276 (287)
Q Consensus 263 ~~~~~~~~~-~~~~~ 276 (287)
.++++.+.+ ..|..
T Consensus 278 ~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 278 RTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHHHHHTTCGGG
T ss_pred HHHHHHHHhccChHH
Confidence 999999976 46643
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.33 E-value=3.3e-11 Score=86.02 Aligned_cols=162 Identities=9% Similarity=-0.006 Sum_probs=84.9
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH-H
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFA-F 113 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 113 (287)
.+......+.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+... +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 44555555566666666666666554432 22445555555666666666666666665554432 33222221111 1
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHhcCchHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVP-DFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 192 (287)
...++..+|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 11122223455565555432 2235556666666666666666666666665543322 234556666666666666666
Q ss_pred HHHHHHHh
Q 023133 193 LIYFREMG 200 (287)
Q Consensus 193 ~~~~~~~~ 200 (287)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=1.4e-11 Score=85.54 Aligned_cols=122 Identities=8% Similarity=0.009 Sum_probs=60.2
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHH
Q 023133 8 KLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQL 87 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 87 (287)
.+...|++++|+..+.......+..+..+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 33444555555555555444332222344455555555555555555555555432 22344555555555555555555
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHH-HHHHhc
Q 023133 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLI-FDHIKG 131 (287)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 131 (287)
...|++.++.. |.+..++..+...|.+.|++++|.+. +++..+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555544 33445555555555555555443332 344443
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.31 E-value=1.5e-10 Score=89.34 Aligned_cols=169 Identities=10% Similarity=0.007 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHH
Q 023133 64 RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNI 143 (287)
Q Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (287)
.+.+...+..+...+...|++++|...++++.+.. |.+...+..+...+.+.|++++|...++++... .|+......
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 34455667778888899999999999999999886 567888999999999999999999999998765 455443332
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCc-CCHHHHHHHHHHHHhc
Q 023133 144 -VLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIK-PDLLTYTALIDSFGRT 221 (287)
Q Consensus 144 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 221 (287)
....+...++.++|...+++..+.... +...+..+...+...|++++|...+.++.+.... .+...+..++..+...
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 233466778888899999998887543 6788889999999999999999999999876311 1256788999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 023133 222 GNIEESLRLFNDMKQ 236 (287)
Q Consensus 222 g~~~~a~~~~~~~~~ 236 (287)
|+.++|...+++...
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999988887653
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.31 E-value=1.9e-10 Score=89.76 Aligned_cols=224 Identities=8% Similarity=0.014 Sum_probs=157.6
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAE-TNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
..|++++|.+++++..+.... .+.. .++++.|...|.+. ...+...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 356777888888776654331 1222 56777777777664 456778899999999
Q ss_pred HHHHHHhcCC---C--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCC--HhhHHHHHHHHHhcCCHHHHH
Q 023133 90 FIEEVVQIAS---P--ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL----KCKPD--LITYNIVLDILGRVGRVNDML 158 (287)
Q Consensus 90 ~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~ 158 (287)
.+.+..+... . .-..+|+.+...|.+.|++++|...|++..+. | .+. ..+++.+..+|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9988765421 1 12457888999999999999999999887542 2 222 3467788888888 9999999
Q ss_pred HHHHHHHHcCCCC-----ChhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CCcCC-HHHHHHHHHHHHhcCCHHHHH
Q 023133 159 NEFASMKEAGVVP-----DFISYNTLLNNLRKIRRLDLCLIYFREMGES----GIKPD-LLTYTALIDSFGRTGNIEESL 228 (287)
Q Consensus 159 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~ 228 (287)
..|++..+..... ...++..+...+.+.|++++|...|++..+. +..++ ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999876532111 1457888899999999999999999988753 21222 235667777888889999999
Q ss_pred HHHHHHHhCCCCcc------hHhHHHHHHHHHhcCChHHHHHH
Q 023133 229 RLFNDMKQQQIRPS------IYVYRSLIDNLKKMGKVDLAMTI 265 (287)
Q Consensus 229 ~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~ 265 (287)
..|++.. . .|+ ......++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999988 4 332 12344555555 56777666653
No 107
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.31 E-value=1.7e-09 Score=92.61 Aligned_cols=233 Identities=9% Similarity=0.042 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 50 DLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLL-IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDH 128 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 128 (287)
+.+..+|++.+.. .+-....|...+..+...|+.++|. +++++.... .|.+...|-..+....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3456678888765 4557788888888888889999996 999999875 466777888889999999999999999998
Q ss_pred HhcCC---------CCCC------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-
Q 023133 129 IKGLK---------CKPD------------LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI- 186 (287)
Q Consensus 129 ~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 186 (287)
+.+.. ..|+ ...|...+....+.|..+.|..+|....+.-..+....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 87531 0132 2367788888888999999999999998761112334444333333344
Q ss_pred CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--cchHhHHHHHHHHHhcCChHHHHH
Q 023133 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR--PSIYVYRSLIDNLKKMGKVDLAMT 264 (287)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~ 264 (287)
++.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++....... -....|...+.--.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4589999999999876 3445666778888888899999999999999976422 145678888888889999999999
Q ss_pred HHHHHhhcCCCCCChhhHhhh
Q 023133 265 IFEEMNSSLSDLAGPKDFKRK 285 (287)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~ 285 (287)
+.+++.+..|+.+....|..+
T Consensus 563 v~~R~~~~~P~~~~~~~f~~r 583 (679)
T 4e6h_A 563 LEKRFFEKFPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHH
Confidence 999999999998877777654
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.31 E-value=1.2e-10 Score=98.67 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=120.2
Q ss_pred cCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFI 91 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 91 (287)
.|++++|++.|++..+.++.....+..+...+.+.|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999988776555889999999999999999999999998763 345778888999999999999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 023133 92 EEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV---GRVNDMLNEFASMKEAG 168 (287)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 168 (287)
++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999886 5678899999999999999999999999988764 34567888899999999 99999999999998875
Q ss_pred CC
Q 023133 169 VV 170 (287)
Q Consensus 169 ~~ 170 (287)
..
T Consensus 159 p~ 160 (568)
T 2vsy_A 159 VG 160 (568)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.31 E-value=5.6e-11 Score=84.81 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhc
Q 023133 108 RIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN-LRKI 186 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 186 (287)
.+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++...... |+...+...... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence 34445555566666666665554332 2234455555556666666666666665554432 222222211111 1122
Q ss_pred CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc-chHhHHHHHHHHHhcCChHHHHHH
Q 023133 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP-SIYVYRSLIDNLKKMGKVDLAMTI 265 (287)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~ 265 (287)
+...+|...+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|...
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~ 166 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK 166 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence 22334566676666542 3346677777777777777777777777777653221 244677777777777777777777
Q ss_pred HHHHhh
Q 023133 266 FEEMNS 271 (287)
Q Consensus 266 ~~~~~~ 271 (287)
|++...
T Consensus 167 y~~al~ 172 (176)
T 2r5s_A 167 YRRQLY 172 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776643
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.30 E-value=2.2e-09 Score=78.94 Aligned_cols=174 Identities=8% Similarity=-0.062 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC----CHHHHHHHHH
Q 023133 87 LLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG----RVNDMLNEFA 162 (287)
Q Consensus 87 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 162 (287)
|.+.|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 33444445555555555555555555555432 33444444444444 4 5555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHh----cCchHHHHHHHHHHhhCCCc-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRK----IRRLDLCLIYFREMGESGIK-PDLLTYTALIDSFGR----TGNIEESLRLFND 233 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 233 (287)
+..+.| +...+..+...|.. .+++++|.++|++..+.|.. .+...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555443 33444455555544 45555565555555554311 013445555555555 5556666666665
Q ss_pred HHhCCCCcchHhHHHHHHHHHhc-C-----ChHHHHHHHHHHhhc
Q 023133 234 MKQQQIRPSIYVYRSLIDNLKKM-G-----KVDLAMTIFEEMNSS 272 (287)
Q Consensus 234 ~~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~ 272 (287)
..+. ..+...+..|...|... | ++++|..+|++..+.
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5554 12333444444444432 2 556666666555443
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.30 E-value=3.4e-11 Score=83.54 Aligned_cols=57 Identities=5% Similarity=-0.005 Sum_probs=21.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|+...+
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3333444444444444443333321 12233333333344444444444444444333
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.29 E-value=1.5e-09 Score=79.81 Aligned_cols=162 Identities=7% Similarity=-0.059 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHhcCCCCCCHhhHHH
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR----QIEKALLIFDHIKGLKCKPDLITYNI 143 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (287)
...+..+...+...+++++|..+|++..+.| +...+..|...|.. + ++++|.+.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444455555555555544433 23334444444444 3 4555555555544422 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHh----cCchHHHHHHHHHHhhCCCcCCHHHHHHH
Q 023133 144 VLDILGR----VGRVNDMLNEFASMKEAGVV-PDFISYNTLLNNLRK----IRRLDLCLIYFREMGESGIKPDLLTYTAL 214 (287)
Q Consensus 144 l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 214 (287)
|...|.. .+++++|+.+|++..+.|.. .+...+..|...|.. .++.++|..+|++..+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 4444443 44555555555555444321 013444445555544 44555555555555544 1222344444
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 023133 215 IDSFGRT-G-----NIEESLRLFNDMKQQQ 238 (287)
Q Consensus 215 ~~~~~~~-g-----~~~~a~~~~~~~~~~~ 238 (287)
...|... | ++++|..+|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444432 2 5566666666555544
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=2.4e-10 Score=89.13 Aligned_cols=191 Identities=11% Similarity=0.092 Sum_probs=136.4
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC-C----HHHHHHHHHHHhccCChHHHHHHHHHHHhcCC---CC--cHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTL-S----SDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS---PE--SII 104 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~ 104 (287)
.|......|...|++++|...+.+........ + ..++..+..+|...|++++|...+++..+... .+ ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 44455677888999999999998886542111 1 34777888889999999999999998765421 12 246
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-hh
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKC---KP--DLITYNIVLDILGRVGRVNDMLNEFASMKEA----GVVPD-FI 174 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~ 174 (287)
+++.+...|.. |++++|+..|++..+... .+ ...+++.+...|.+.|++++|+..|++..+. +..++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 78888899988 999999999988764310 11 1357888899999999999999999998653 21111 23
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD------LLTYTALIDSFGRTGNIEESLRL 230 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 230 (287)
.+..+...+...|++++|...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 56667777888899999999999988 4 332 12344555555 56777666553
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.22 E-value=3e-08 Score=76.66 Aligned_cols=209 Identities=10% Similarity=-0.015 Sum_probs=142.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023133 55 ILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESII---VVNRIIFAFAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 131 (287)
.+.++......|+..+...+...+.-.- +.+.......+.. .+...+..+...|++++|...+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3444444345677777766666554321 1111211122222 333446778899999999999999876
Q ss_pred CCC-CCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 132 LKC-KPDL----ITYNIVLDILGRVGRVNDMLNEFASMKEAGVV-PD----FISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 132 ~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
... .|+. ..+..+...+...+++++|...|++..+.... ++ ..+++.+...|...|++++|..+++++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 421 2221 13345667777888999999999999874322 22 23688899999999999999999999873
Q ss_pred ----C-CCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCcc-hHhHHHHHHHHHhcCC-hHHHHHHHHHH
Q 023133 202 ----S-GIKPD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQ----QIRPS-IYVYRSLIDNLKKMGK-VDLAMTIFEEM 269 (287)
Q Consensus 202 ----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~-~~~a~~~~~~~ 269 (287)
. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|..+..++...|+ +++|.+.++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 1 21222 237888999999999999999999988743 21222 5678888999999995 69999999988
Q ss_pred hhc
Q 023133 270 NSS 272 (287)
Q Consensus 270 ~~~ 272 (287)
...
T Consensus 264 l~i 266 (293)
T 3u3w_A 264 SFF 266 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.22 E-value=1.7e-10 Score=88.84 Aligned_cols=203 Identities=8% Similarity=0.019 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHH
Q 023133 67 SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLD 146 (287)
Q Consensus 67 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 146 (287)
+...+..+...+...|++++|...+++.++.. +.+...+..+..+|.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666677777778888888877777765 4567777777788888888888888888777653 335567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
++...|++++|...|+...+.+.. +...+...+....+.. ++.. +........+.+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 788888888888888776553211 1011111111111111 1111 111222222333333333322 2 2577788
Q ss_pred HHHHHHHHHhCCCCcch-HhHHHHHHHHHhc-CChHHHHHHHHHHhhcCCCCCChh
Q 023133 227 SLRLFNDMKQQQIRPSI-YVYRSLIDNLKKM-GKVDLAMTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~ 280 (287)
|++.++...+. .|+. .....+...+.+. +.+++|.++|.++....+....|.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~ 207 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPD 207 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCS
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCc
Confidence 88887777654 3443 3333333334443 567788888888766544433333
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=2.4e-09 Score=78.59 Aligned_cols=148 Identities=10% Similarity=0.022 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
...+..+...+...|++++|...|++.. .|+...+..+..++...|++++|...|++..+... .+...+..+..+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~ 80 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHH
Confidence 3445667788889999999999998875 56788899999999999999999999999887653 367788889999
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhH
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPD----------------LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVY 246 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 246 (287)
+...|++++|...+++..+.. +.+ ...+..+..+|...|++++|.+.|++..+. .|+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~--- 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP--- 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG---
T ss_pred HHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc---
Confidence 999999999999999988753 222 267788888999999999999999998875 4544
Q ss_pred HHHHHHHHhcCChHHHHHHHHHH
Q 023133 247 RSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 247 ~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
..+..+.|...+.+.
T Consensus 155 --------~~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 155 --------RHSKIDKAMECVWKQ 169 (213)
T ss_dssp --------GGGHHHHHHHHHHTT
T ss_pred --------ccchHHHHHHHHHhc
Confidence 234455665555543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=5.5e-09 Score=76.66 Aligned_cols=128 Identities=6% Similarity=-0.044 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 023133 36 YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAK 115 (287)
Q Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 115 (287)
+..+...+...|++++|+..+++. +.|+...+..+..++...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 445566666777777777777665 35566677777777777777777777777777665 4566677777777777
Q ss_pred cCCHHHHHHHHHHHhcCCCC--------------C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023133 116 SRQIEKALLIFDHIKGLKCK--------------P-DLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 168 (287)
.|++++|...|++..+.... | ....+..+..++.+.|++++|...|+...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 77777777777777654211 1 12466677777777888888888877777653
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.17 E-value=7.9e-08 Score=75.18 Aligned_cols=167 Identities=7% Similarity=-0.032 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-C-CHHHHHHHH
Q 023133 50 DLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD-DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS-R-QIEKALLIF 126 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 126 (287)
++|++++++++..+ +-+..+|+.--.++...+ .+++++.+++.++... +-+..+|+.-...+.+. + +++++++.+
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444432 112233333333333333 2444444444444443 33344444444444333 3 444444444
Q ss_pred HHHhcCCCCCCHhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc-------hHH
Q 023133 127 DHIKGLKCKPDLITYNIVLDILGRVGRVN--------DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR-------LDL 191 (287)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 191 (287)
+.+.+.. +.+-.+|+.-.-++.+.|.++ ++++.++++.+..+. |..+|+.-...+.+.+. +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 4444432 223334433333333222222 445555555444333 44444444444444443 344
Q ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHhc
Q 023133 192 CLIYFREMGESGIKPDLLTYTALIDSFGRT 221 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (287)
+++.+.++.... +-|...|+.+-..+.+.
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~ 255 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHF 255 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 555554444432 23444444444444333
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.15 E-value=3e-08 Score=76.70 Aligned_cols=169 Identities=9% Similarity=-0.028 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-H----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD-L----ITYNIVLDILGRVGRVNDMLNEFASMKEAGVV---PD-- 172 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-- 172 (287)
...+...+..+...|++++|.+.+.+..+.....+ . ..+..+...+...|++++|...+++..+.... +.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555667778888889888888877765421111 1 12344556667788899999888887653211 11
Q ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHhh---C-CCcC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCc-
Q 023133 173 FISYNTLLNNLRKIRRLDLCLIYFREMGE---S-GIKP--DLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ----IRP- 241 (287)
Q Consensus 173 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~- 241 (287)
..+|+.+...|...|++++|...+++..+ . +..+ ...++..+..+|...|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34778888888889999999998888762 2 1111 12577788888899999999999988876431 111
Q ss_pred chHhHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 023133 242 SIYVYRSLIDNLKKMGKVDLA-MTIFEEMNS 271 (287)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 271 (287)
-..+|..+..++...|++++| ...++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 156778888888899999998 777877644
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.13 E-value=2.7e-10 Score=78.74 Aligned_cols=97 Identities=10% Similarity=-0.048 Sum_probs=56.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHH
Q 023133 138 LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDS 217 (287)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 217 (287)
...+..+...+...|++++|...|+........ +...|..+..++...|++++|...|++..+.. +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 334555555666666666666666666554322 45555556666666666666666666665542 2244455556666
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 023133 218 FGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 218 ~~~~g~~~~a~~~~~~~~~ 236 (287)
|...|++++|.+.|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666554
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.12 E-value=2.1e-09 Score=81.38 Aligned_cols=190 Identities=8% Similarity=-0.030 Sum_probs=134.9
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHhcCCCCCCH--------------
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRI-------IFAFAKSRQIEKALLIFDHIKGLKCKPDL-------------- 138 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 138 (287)
..++...|.+.|.++.+.. |.....|..+ ...+.+.++..+++..+.+-.+. .|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 5688888888998888876 5667778777 45565555566666555554432 2211
Q ss_pred --------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC--H
Q 023133 139 --------ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD--L 208 (287)
Q Consensus 139 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 208 (287)
...-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345667788899999999998887654 443355556667888999999999998665432 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc--hHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS--IYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....|+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3567788889999999999999998875433243 345666777888999999999999999888886
No 122
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.12 E-value=4.6e-08 Score=83.80 Aligned_cols=233 Identities=11% Similarity=0.028 Sum_probs=174.2
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHH-HHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 023133 16 SAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSF-QILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEV 94 (287)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 94 (287)
+.+..+|++.....+..+..|...+..+...|+.+.|. .+|++.... .+.+...+...+....+.|+++.|.++|+.+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567788888877666688999999999999999997 999999864 4456666777888888899999999999998
Q ss_pred HhcC----------CCC-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCHhhHHHHHHHHHhc-
Q 023133 95 VQIA----------SPE-----------SIIVVNRIIFAFAKSRQIEKALLIFDHIKGL-KCKPDLITYNIVLDILGRV- 151 (287)
Q Consensus 95 ~~~~----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~- 151 (287)
++.. .+. ...+|...+....+.|+.+.|..+|.+..+. + ......|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 7642 121 2347888888888999999999999999875 2 12233343333222333
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcC--CHHHHHHHHHHHHhcCCHHHHHH
Q 023133 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP--DLLTYTALIDSFGRTGNIEESLR 229 (287)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 229 (287)
++++.|..+|+...+. .+-+...+...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4589999999998876 33356667788888888999999999999998764222 34578888888889999999999
Q ss_pred HHHHHHhCCCCcchHhHHHHHHHH
Q 023133 230 LFNDMKQQQIRPSIYVYRSLIDNL 253 (287)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~ 253 (287)
+.+++.+. .|+......+++-|
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHh--CCCCcHHHHHHHHh
Confidence 99999975 34444444444433
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.11 E-value=2.7e-09 Score=71.52 Aligned_cols=102 Identities=11% Similarity=0.016 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLK 254 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (287)
.+......|.+.|++++|.+.|++.++.. +.+...|..+..+|.+.|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 44455555666666666666666655543 3345556666666666666666666666665532 233455666666666
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCC
Q 023133 255 KMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
..|++++|.+.|+++.+..|+++.
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~ 116 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEE 116 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHH
Confidence 666666666666666666665543
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=6.5e-09 Score=80.43 Aligned_cols=168 Identities=11% Similarity=0.036 Sum_probs=121.7
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcC-CCCH----HHHHHHHHHHhccCChHHHHHHHHHHHhcCCC-Cc----H
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSR-TLSS----DCYTNFARAFIMTDDCTQLLIFIEEVVQIASP-ES----I 103 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 103 (287)
..+...+..+...|++++|..++++...... .|+. ..+..+...+...+++++|...++++.+.... ++ .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 5777777888888999999999988876421 1221 12334666777788999999999988874322 22 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc----C-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKG----L-KCKPD-LITYNIVLDILGRVGRVNDMLNEFASMKEA----GVVPD- 172 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 172 (287)
.+++.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++..+. +..+.
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 4688899999999999999999988763 1 11222 237788889999999999999998887542 22222
Q ss_pred hhHHHHHHHHHHhcCc-hHHHHHHHHHHhh
Q 023133 173 FISYNTLLNNLRKIRR-LDLCLIYFREMGE 201 (287)
Q Consensus 173 ~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 201 (287)
..+|..+..++.+.|+ .++|.+.+++...
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5678888888999995 5889888887753
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.10 E-value=1.2e-07 Score=74.15 Aligned_cols=226 Identities=11% Similarity=0.080 Sum_probs=168.1
Q ss_pred HHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc-C-Ch
Q 023133 8 KLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN-DIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT-D-DC 84 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 84 (287)
...+.+..++|+++++.+...++....+|+.--..+...+ .++++++.++.++... +-+..+|+.-..++... + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 3344556678999999999999776688988888888888 5999999999999864 33667787766666665 6 88
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC---
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE--------KALLIFDHIKGLKCKPDLITYNIVLDILGRVGR--- 153 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 153 (287)
++++++++++++.. +.+..+|+.-...+.+.|.++ ++++.++++.+.. +.+...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999999999876 678888888777777777766 8999999998765 4577789888888888876
Q ss_pred ----HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCch--------------------HHHHHHHHHHhhCC-----C
Q 023133 154 ----VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRL--------------------DLCLIYFREMGESG-----I 204 (287)
Q Consensus 154 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~ 204 (287)
++++++.+.+....... |...|+.+-..+.+.|.. .........+...+ -
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 78999999998887655 778888777766666654 22333333333221 1
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.++......|++.|...|+.++|.++++.+.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 356667777788888888888888888887643
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.10 E-value=7.9e-09 Score=75.08 Aligned_cols=156 Identities=9% Similarity=-0.027 Sum_probs=88.7
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCC-CHhhHHHHHHHHHhcCCH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKG----LKCKP-DLITYNIVLDILGRVGRV 154 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~ 154 (287)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++..+ .+..+ ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664443322 2223455666666667777777777776666543 11111 233556666667777777
Q ss_pred HHHHHHHHHHHHc----CCCC--ChhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CCcC-CHHHHHHHHHHHHhcCC
Q 023133 155 NDMLNEFASMKEA----GVVP--DFISYNTLLNNLRKIRRLDLCLIYFREMGES----GIKP-DLLTYTALIDSFGRTGN 223 (287)
Q Consensus 155 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~ 223 (287)
++|...+++..+. +-.| ....+..+...+...|++++|...+++..+. +... -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777665432 1111 1234566666777777777777777766531 1111 12235667777777888
Q ss_pred HHHHHHHHHHHHh
Q 023133 224 IEESLRLFNDMKQ 236 (287)
Q Consensus 224 ~~~a~~~~~~~~~ 236 (287)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776653
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.09 E-value=1.9e-09 Score=76.79 Aligned_cols=120 Identities=13% Similarity=0.122 Sum_probs=65.3
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhccCCh--HHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARA-FIMTDDC--TQL 87 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~a 87 (287)
..|++++|+..|+.....++....+|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44556666666666555554333556666666666666666666666665542 2244445555555 4455555 666
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 88 LIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
...++++.+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666665554 344555555666666666666666666665544
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.09 E-value=1e-08 Score=71.90 Aligned_cols=129 Identities=9% Similarity=0.005 Sum_probs=95.8
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+..++..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 467777778888888888888888887653 3356777778888888888888888888888775 45677788888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYN--IVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
...|++++|...|++..+.. +.+...+. .+...+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888877653 22344443 33344667788888888887654
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.08 E-value=1.4e-08 Score=71.15 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=62.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 023133 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150 (287)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 150 (287)
+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4444455555566666666666555543 3345555555555555566666665555554432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHH--HHHHHHhcCchHHHHHHHHH
Q 023133 151 VGRVNDMLNEFASMKEAGVVPDFISYNT--LLNNLRKIRRLDLCLIYFRE 198 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~ 198 (287)
.|++++|...|++..+.... +...+.. ....+...|++++|...+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555443221 2222211 22224444555555554443
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.07 E-value=6.9e-09 Score=69.47 Aligned_cols=109 Identities=10% Similarity=0.004 Sum_probs=87.8
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+......+.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++.++.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 677888888999999999999999988763 4467788888889999999999999999988876 56778888899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVL 145 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 145 (287)
...|++++|.+.|++..+.. +-+...+..+-
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 99999999999999887763 23444444443
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.07 E-value=2e-09 Score=76.65 Aligned_cols=121 Identities=7% Similarity=0.015 Sum_probs=73.4
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHhcCch--H
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN-LRKIRRL--D 190 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 190 (287)
...|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34566667777776665543 335556666777777777777777777776654322 45555556666 5566666 7
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
+|...+++..+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777766553 334556666666777777777777777776654
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.07 E-value=6.8e-09 Score=78.58 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=35.2
Q ss_pred hcCChhHHHHHHHHHhhcCCCCchhHHHH-------HHHHhhcCChhHHHHHHHHH
Q 023133 11 KAGNVSAAVRLLQSLRDKNIFLPNAYNCV-------LVASAETNDIDLSFQILKDL 59 (287)
Q Consensus 11 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~ 59 (287)
..++.+.|.+.|.+....++.....|..+ ...+...++..+++..+..-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~ 73 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS 73 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999887766888877 45555555555555544443
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.05 E-value=3.6e-09 Score=76.88 Aligned_cols=153 Identities=8% Similarity=-0.037 Sum_probs=81.7
Q ss_pred HhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhc----CC-CCHHHHHHHHHHHhccCC
Q 023133 10 CKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSS----RT-LSSDCYTNFARAFIMTDD 83 (287)
Q Consensus 10 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~ 83 (287)
...|++++|.+.++.+.. .+... .++..+...+...|++++|...+++..... .. ....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456777777775544433 22122 667777777777777777777777765421 11 123345555666666677
Q ss_pred hHHHHHHHHHHHhc---CC-C--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCC--HhhHHHHHHHHHhc
Q 023133 84 CTQLLIFIEEVVQI---AS-P--ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL----KCKPD--LITYNIVLDILGRV 151 (287)
Q Consensus 84 ~~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~ 151 (287)
+++|...+++..+. .. . ....++..+...+...|++++|...+++..+. + .+. ..++..+..++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHC
Confidence 77766666665443 10 1 12334555666666666666666666554321 1 111 11234555555566
Q ss_pred CCHHHHHHHHHHH
Q 023133 152 GRVNDMLNEFASM 164 (287)
Q Consensus 152 ~~~~~a~~~~~~~ 164 (287)
|++++|...+++.
T Consensus 161 g~~~~A~~~~~~a 173 (203)
T 3gw4_A 161 KNLLEAQQHWLRA 173 (203)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 6666666555554
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.05 E-value=5.4e-10 Score=88.25 Aligned_cols=130 Identities=12% Similarity=0.017 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPES--------------IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC 134 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (287)
..+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..+++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444445555555555555555555554431111 3566666666666666666666666665543
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH-HHHHHHHh
Q 023133 135 KPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC-LIYFREMG 200 (287)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 200 (287)
+.+...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|+.+++ ...+..|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556666666666666666666666666655322 445566666666666666666 33444443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=9.2e-09 Score=71.06 Aligned_cols=96 Identities=10% Similarity=0.008 Sum_probs=47.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (287)
.+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|...|++..+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 33444444455555555555555555443 3444455555555555555555555555554432 223344445555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 023133 150 RVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~ 167 (287)
+.|++++|...|+...+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555443
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.03 E-value=4e-09 Score=72.88 Aligned_cols=96 Identities=10% Similarity=-0.093 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFG 219 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (287)
.+..+...+.+.|++++|...|+........ +...|..+..++...|++++|...|++..+.. +.+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 4555555556666666666666666554322 45555555666666666666666666655542 223445555556666
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 023133 220 RTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~ 237 (287)
..|++++|...|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665553
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=9.8e-08 Score=73.76 Aligned_cols=168 Identities=10% Similarity=-0.008 Sum_probs=126.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CCC--H
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPES-----IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC---KPD--L 138 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~ 138 (287)
..+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455567788899999999999998887643221 12344566777888999999999998875321 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC-CC--ChhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CCcCC-
Q 023133 139 ITYNIVLDILGRVGRVNDMLNEFASMKE---AGV-VP--DFISYNTLLNNLRKIRRLDLCLIYFREMGES----GIKPD- 207 (287)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~- 207 (287)
.+++.+...|...|++++|...|++..+ ... .+ ...++..+...|...|++++|...+++..+. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788999999999999999999999863 211 11 1258888999999999999999999988643 11111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 023133 208 LLTYTALIDSFGRTGNIEES-LRLFNDMKQ 236 (287)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 236 (287)
..+|..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777887653
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.03 E-value=2.7e-08 Score=65.86 Aligned_cols=93 Identities=11% Similarity=0.204 Sum_probs=37.3
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 023133 72 TNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151 (287)
Q Consensus 72 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (287)
..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 333334444444444444444443332 2233334444444444444444444444443321 12233333444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 023133 152 GRVNDMLNEFASMKE 166 (287)
Q Consensus 152 ~~~~~a~~~~~~~~~ 166 (287)
|++++|...++++.+
T Consensus 91 ~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 91 GDYDEAIEYYQKALE 105 (125)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444433
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.03 E-value=2e-08 Score=66.49 Aligned_cols=115 Identities=11% Similarity=0.155 Sum_probs=88.8
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 567788888888899999999998888763 3456777888888888899999999998888775 56677888888889
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV 151 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (287)
...|++++|...++++.+.. +.+...+..+...+...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 99999999999998887653 33445555555555443
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.02 E-value=6.1e-09 Score=71.33 Aligned_cols=96 Identities=8% Similarity=-0.055 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHH
Q 023133 139 ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSF 218 (287)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 218 (287)
..+..+...+.+.|++++|...|+........ +...|..+..++...|++++|...|++..+.. +.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 34455555666666666666666666554332 45556666666666666666666666666543 33444555566666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 023133 219 GRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 219 ~~~g~~~~a~~~~~~~~~ 236 (287)
...|++++|.+.|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666654
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=4e-09 Score=81.12 Aligned_cols=191 Identities=10% Similarity=0.011 Sum_probs=129.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+.+.|++++|+..|++.+... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 567788888999999999999999998763 3367788888999999999999999999998876 56778888999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDL-ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 192 (287)
...|++++|...|++..+.. |+. ..+...+....+. .++. -+..........+......+ ..+ ..|+.++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 99999999999998876542 221 1111111111111 1111 12223333333344443333 322 36888999
Q ss_pred HHHHHHHhhCCCcCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q 023133 193 LIYFREMGESGIKPDLL-TYTALIDSFGRT-GNIEESLRLFNDMKQ 236 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 236 (287)
.+.++...+. .|+.. ....+...+.+. +.+++|.++|.++.+
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9998888765 45443 334444444444 668889999988765
No 142
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=1.8e-08 Score=67.39 Aligned_cols=92 Identities=9% Similarity=0.093 Sum_probs=37.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 023133 73 NFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152 (287)
Q Consensus 73 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (287)
.+...+...|+++.|...+++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 94 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLN 94 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhC
Confidence 33334444444444444444444332 2233344444444444444444444444443321 122333344444444444
Q ss_pred CHHHHHHHHHHHHH
Q 023133 153 RVNDMLNEFASMKE 166 (287)
Q Consensus 153 ~~~~a~~~~~~~~~ 166 (287)
++++|...|++..+
T Consensus 95 ~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 95 KHVEAVAYYKKALE 108 (131)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 44444444444433
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.99 E-value=2.8e-08 Score=66.75 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333344444444444444444444433321 1123333333334444444444444444433
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.99 E-value=2.9e-08 Score=66.63 Aligned_cols=116 Identities=13% Similarity=0.042 Sum_probs=94.2
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 688888999999999999999999988653 3367788888889999999999999999998875 56778888899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (287)
.+.|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 99999999999999887653 234456666776766655
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.98 E-value=1.1e-06 Score=68.34 Aligned_cols=223 Identities=9% Similarity=0.083 Sum_probs=144.0
Q ss_pred hcCChh-HHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCC----------hHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 023133 45 ETNDID-LSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDD----------CTQLLIFIEEVVQIASPESIIVVNRIIFA 112 (287)
Q Consensus 45 ~~~~~~-~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (287)
+.|.++ +|+++.+.++.. .|+ ...|+.--..+...+. +++++.+++.+.... |-+..+|+.-...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445444 677777777754 333 3344433333322222 567777787777765 5667777777777
Q ss_pred HHhcC--CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc---
Q 023133 113 FAKSR--QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR-VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI--- 186 (287)
Q Consensus 113 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 186 (287)
+.+.+ .+++++..++.+.+.. +.+-..|+.-.-++...|. ++++++.+..+.+..+. |..+|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 4788888888887654 4566777776666677777 57888888888877655 666776666555544
Q ss_pred -----------CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCcchH
Q 023133 187 -----------RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT-----------GNIEESLRLFNDMKQQQIRPSIY 244 (287)
Q Consensus 187 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~ 244 (287)
+.++++++.+....... +-|...|+-+-..+.+. +.++++++.++++.+. .||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-
Confidence 45677888888777653 44666676555555444 4578888888888864 4543
Q ss_pred hHHH--HHH---HHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 245 VYRS--LID---NLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 245 ~~~~--li~---~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
.|.. ++. .....|..+++..++.++.+..|..
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 2322 221 1224577788888999888887754
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=2.5e-08 Score=66.64 Aligned_cols=118 Identities=8% Similarity=0.034 Sum_probs=91.4
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+...|+++.|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 567778888888888888888888887653 3456777778888888888888888888888775 45677888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCH
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRV 154 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 154 (287)
...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88899999988888877653 33566777777777776653
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=5.4e-09 Score=72.16 Aligned_cols=96 Identities=4% Similarity=-0.057 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...+++..+.. |.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 455555555666666666666666655442 2244555555555666666666666666665554 34445555555666
Q ss_pred HhcCCHHHHHHHHHHHhc
Q 023133 114 AKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~ 131 (287)
...|++++|...|++..+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666655544
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.94 E-value=3e-08 Score=64.32 Aligned_cols=104 Identities=11% Similarity=-0.039 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc--chHhHHHH
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP--SIYVYRSL 249 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 249 (287)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34456666777777777777777777776653 3456677777778888888888888888887652 22 46677777
Q ss_pred HHHHHhc-CChHHHHHHHHHHhhcCCCCC
Q 023133 250 IDNLKKM-GKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 250 i~~~~~~-g~~~~a~~~~~~~~~~~~~~~ 277 (287)
..++... |++++|.+.++++....|..+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888777654
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.94 E-value=2e-09 Score=78.21 Aligned_cols=129 Identities=9% Similarity=0.037 Sum_probs=69.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPES---------------IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC 134 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (287)
.+..+...+...|++++|...|++..+...... ..++..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344444455555555555555555554321110 2556666666777777777777776665542
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHH-HHHHHHh
Q 023133 135 KPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCL-IYFREMG 200 (287)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 200 (287)
+.+...+..+..+|...|++++|...|++..+.... +...+..+..++...++.+++. ..+..+.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556666666677777777777777776655322 4455666666666666555555 4444444
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.93 E-value=6.2e-08 Score=76.45 Aligned_cols=151 Identities=11% Similarity=-0.003 Sum_probs=122.8
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----------------HhhHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD----------------LITYNIV 144 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l 144 (287)
.+++++|...++...+.. +.+...+..+...|.+.|++++|...|++..+.. |+ ...|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHH
Confidence 455556665555544433 3468889999999999999999999999988763 33 4788999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH
Q 023133 145 LDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI 224 (287)
Q Consensus 145 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 224 (287)
..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887543 77889999999999999999999999998864 44677888899999999999
Q ss_pred HHH-HHHHHHHHh
Q 023133 225 EES-LRLFNDMKQ 236 (287)
Q Consensus 225 ~~a-~~~~~~~~~ 236 (287)
++| ...++.|..
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 988 456666653
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.93 E-value=5.7e-06 Score=64.42 Aligned_cols=223 Identities=13% Similarity=0.087 Sum_probs=163.8
Q ss_pred HHHhcCChh-HHHHHHHHHhhcCCCCchhHHHHHHHHhhcCC----------hhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023133 8 KLCKAGNVS-AAVRLLQSLRDKNIFLPNAYNCVLVASAETND----------IDLSFQILKDLLVSSRTLSSDCYTNFAR 76 (287)
Q Consensus 8 ~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 76 (287)
...+.|.++ +|+.+++.+...++....+|+.--..+...+. +++++.+++.++... +-+..+|+.-.-
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 334566665 79999999999887665777765555544443 678899999998764 336777877766
Q ss_pred HHhccC--ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc--
Q 023133 77 AFIMTD--DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ-IEKALLIFDHIKGLKCKPDLITYNIVLDILGRV-- 151 (287)
Q Consensus 77 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 151 (287)
++...+ .+++++.+++.+.+.. +.+..+|+.-...+...|. ++++++.++++.+.. +.+...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 666667 4899999999999987 6788888888888888888 699999999998765 45677787766665554
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-----------CchHHHHHHHHHHhhCCCcCCH
Q 023133 152 ------------GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI-----------RRLDLCLIYFREMGESGIKPDL 208 (287)
Q Consensus 152 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~ 208 (287)
+.++++++.+.......+. |...|+.+-..+.+. +.++++++.+.++.+. .||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 4588999999999887654 777777655555444 4578899999999876 4553
Q ss_pred HHHHHHH-----HHHHhcCCHHHHHHHHHHHHhC
Q 023133 209 LTYTALI-----DSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 209 ~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
.|+.+. ......|..+++...+.++.+-
T Consensus 272 -~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp -HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 233222 1222467788899999999874
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.8e-08 Score=67.34 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFG 219 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (287)
.+..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 4445555555666666666666655554322 44555555555555566666665555555442 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 023133 220 RTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~ 236 (287)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555554
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=6.6e-08 Score=63.29 Aligned_cols=99 Identities=11% Similarity=0.081 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLK 254 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (287)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 33344444444444444444444444332 2233444444444445555555555555444431 123344444444555
Q ss_pred hcCChHHHHHHHHHHhhcCCC
Q 023133 255 KMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~ 275 (287)
..|++++|.+.+++.....|+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT
T ss_pred HHhhHHHHHHHHHHHHHcCCC
Confidence 555555555555555444443
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.86 E-value=5.6e-08 Score=68.18 Aligned_cols=99 Identities=2% Similarity=-0.155 Sum_probs=84.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHH
Q 023133 137 DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALID 216 (287)
Q Consensus 137 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 216 (287)
+...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|...+++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567888888999999999999999998887543 67888889999999999999999999988764 446778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 023133 217 SFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 217 ~~~~~g~~~~a~~~~~~~~~~ 237 (287)
+|...|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999998864
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.7e-07 Score=62.42 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILG 149 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (287)
.+..+...+...|++++|...|++.++.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444555555555555555555443 3344455555555555555555555555544432 223334444445555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 023133 150 RVGRVNDMLNEFASMKE 166 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~ 166 (287)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555554443
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=3e-08 Score=67.81 Aligned_cols=96 Identities=7% Similarity=-0.057 Sum_probs=56.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...+++..+.. |.+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 445555556666666666666666665542 2345555555666666666666666666666554 34455555566666
Q ss_pred HhcCCHHHHHHHHHHHhc
Q 023133 114 AKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~ 131 (287)
...|++++|...|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665544
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.85 E-value=2.4e-07 Score=60.48 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=8.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHH
Q 023133 39 VLVASAETNDIDLSFQILKDLL 60 (287)
Q Consensus 39 l~~~~~~~~~~~~a~~~~~~~~ 60 (287)
+...+...|++++|...+++..
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~ 31 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAI 31 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 3333333344444444443333
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.1e-06 Score=71.63 Aligned_cols=196 Identities=10% Similarity=-0.010 Sum_probs=142.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCc-----------------hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC-C
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP-----------------NAYNCVLVASAETNDIDLSFQILKDLLVSSRTL-S 67 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 67 (287)
...+.+.|++++|++.|..+.+...... .++..+...|...|++++|.+.+.++...-... +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3557889999999999999987655432 137789999999999999999999886532121 2
Q ss_pred H----HHHHHHHHHHhccCChHHHHHHHHHHHhc----CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC
Q 023133 68 S----DCYTNFARAFIMTDDCTQLLIFIEEVVQI----ASP-ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL----KC 134 (287)
Q Consensus 68 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~ 134 (287)
. ...+.+...+...|+++.+..+++..... +.. .-..++..+...|...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12333444555678999999999877542 222 23567888999999999999999999887532 11
Q ss_pred CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 135 KP-DLITYNIVLDILGRVGRVNDMLNEFASMKEA----GVVPD--FISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 135 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
.+ ...++..++..|...|++++|..+++..... +.+|. ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2347888999999999999999999887542 11111 24566777788889999999988877653
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.85 E-value=5.9e-08 Score=65.68 Aligned_cols=99 Identities=9% Similarity=-0.047 Sum_probs=68.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH
Q 023133 136 PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215 (287)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 215 (287)
.+...+..+...+...|++++|...|+........ +...|..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 35566677777777777777777777777665432 45667777777777777777777777776653 33556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 023133 216 DSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~~~~ 236 (287)
.++...|++++|...|++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777777777664
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.84 E-value=1.2e-07 Score=68.63 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHH
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDIL 148 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (287)
..+..+..++...|++++|...+++.++.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 455666666777777777777777776664 4556666667777777777777777777665542 23445566666666
Q ss_pred HhcCCHHHHH-HHHHHHHH
Q 023133 149 GRVGRVNDML-NEFASMKE 166 (287)
Q Consensus 149 ~~~~~~~~a~-~~~~~~~~ 166 (287)
...++.+++. ..+..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6666655555 44444433
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.82 E-value=8.4e-08 Score=64.21 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCcc----hHhHH
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ--IRPS----IYVYR 247 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~ 247 (287)
.++..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.+++.++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777777777777777776653 3456667777777777777777777777776431 0111 23566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 248 SLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 248 ~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.+..++...|++++|.+.|++.....|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6677777888888888888888776654
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.81 E-value=7e-08 Score=64.00 Aligned_cols=99 Identities=10% Similarity=-0.005 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHh
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKK 255 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (287)
+..+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4445556667777777777777776653 3355666667777777777777777777776642 2245566667777777
Q ss_pred cCChHHHHHHHHHHhhcCCCC
Q 023133 256 MGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~~~ 276 (287)
.|++++|...|+++.+..|+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 777777777777777666654
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.81 E-value=1.1e-07 Score=61.66 Aligned_cols=26 Identities=12% Similarity=-0.077 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
.+..+...+...|++++|...+++..
T Consensus 42 ~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 42 YWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333333344444444444443333
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.2e-07 Score=63.56 Aligned_cols=99 Identities=10% Similarity=0.006 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD----LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLI 250 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 250 (287)
.+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+..+.
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 106 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHH
Confidence 3344444444444444444444444433 222 2344444444444555555555554444321 12333444444
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCC
Q 023133 251 DNLKKMGKVDLAMTIFEEMNSSLSDL 276 (287)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (287)
.++...|++++|...|++.....|+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44455555555555555554444443
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.80 E-value=2.1e-07 Score=62.28 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=63.8
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCC--CCc----HHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS--PES----IIVVNR 108 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 108 (287)
++..+...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|++.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566666667777777777777666542 23455666666667777777777777766655431 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHH
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYN 142 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (287)
+..++...|++++|++.|++..+. .|+.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 667777777777777777766553 34544433
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=3.9e-07 Score=61.53 Aligned_cols=96 Identities=7% Similarity=0.033 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (287)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3344444444444555555555555444443 2334444445555555555555555554444432 2233344444444
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 023133 148 LGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~ 165 (287)
+...|++++|...|+...
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555554443
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=3.9e-07 Score=63.78 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=41.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh
Q 023133 71 YTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR 150 (287)
Q Consensus 71 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 150 (287)
+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|..
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3333444444444444444444444433 2334444444444444444444444444444332 1223344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 023133 151 VGRVNDMLNEFASMKE 166 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~ 166 (287)
.|++++|...|++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 4444444444444433
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.75 E-value=2.2e-08 Score=82.47 Aligned_cols=89 Identities=11% Similarity=0.044 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
..+|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455555555666666666666665555442 224445555555666666666666666665554322 33455555555
Q ss_pred HHhcCchHHHH
Q 023133 183 LRKIRRLDLCL 193 (287)
Q Consensus 183 ~~~~~~~~~a~ 193 (287)
+.+.++.+++.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.75 E-value=7.8e-07 Score=72.50 Aligned_cols=197 Identities=9% Similarity=-0.041 Sum_probs=95.6
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------------HHHHHHHHHHhccCChHHHHHHHHHHHhcCCC-C
Q 023133 39 VLVASAETNDIDLSFQILKDLLVSSRTLSS----------------DCYTNFARAFIMTDDCTQLLIFIEEVVQIASP-E 101 (287)
Q Consensus 39 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~ 101 (287)
-...+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+.+..+.+.-.. +
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345566777778887777777664322111 12445556666666666666666555432111 1
Q ss_pred cH----HHHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-
Q 023133 102 SI----IVVNRIIFAFAKSRQIEKALLIFDHIKG----LKCKPD-LITYNIVLDILGRVGRVNDMLNEFASMKEA--GV- 169 (287)
Q Consensus 102 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 169 (287)
+. .+.+.+...+...|++++|..++..... .+..+. ..++..+...|...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 1222233333344556666666555432 111121 224455555666666666666666555332 11
Q ss_pred -CC-ChhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CCcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 170 -VP-DFISYNTLLNNLRKIRRLDLCLIYFREMGES----GIKPD--LLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 170 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
.+ ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 01 1234555555566666666666666554321 11111 1233444444555566666655555544
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=8.8e-07 Score=60.48 Aligned_cols=96 Identities=14% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD----LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNT 178 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (287)
...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...++...+.... +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 344444444444455555555555444433 222 233444444444444444444444444433211 2333444
Q ss_pred HHHHHHhcCchHHHHHHHHHHhh
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
+..++...|++++|...+++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.75 E-value=2.6e-07 Score=61.57 Aligned_cols=55 Identities=7% Similarity=0.151 Sum_probs=23.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 129 (287)
+...+...|+++.|...+++..+.. +.+..++..+...+...|++++|...+++.
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3334444444444444444444332 233334444444444444444444444443
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=1.3e-07 Score=63.17 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----hhHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVV--PD----FISYN 177 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 177 (287)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.... ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344445555555555555555555554432 223444455555555555555555555554433110 11 33344
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhh
Q 023133 178 TLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 178 ~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
.+..++...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 444444444444444444444443
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=3.3e-07 Score=60.73 Aligned_cols=96 Identities=6% Similarity=0.015 Sum_probs=64.9
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFA 114 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (287)
.+..+...+.+.|++++|+..+++.++.. +.+...+..+..++...|++++|+..+++.++.. |.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45556666777777777777777776653 3356666667777777777777777777777665 445666667777777
Q ss_pred hcCCHHHHHHHHHHHhcC
Q 023133 115 KSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~ 132 (287)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776654
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.73 E-value=2e-08 Score=66.26 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=41.6
Q ss_pred CchHHHHHHHHHHhhCC--CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHH
Q 023133 187 RRLDLCLIYFREMGESG--IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264 (287)
Q Consensus 187 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (287)
|++++|...|++..+.+ -+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence 44455555555554432 11223344445555555555555555555555432 2234444445555555555555555
Q ss_pred HHHHHhhcCCCCCC
Q 023133 265 IFEEMNSSLSDLAG 278 (287)
Q Consensus 265 ~~~~~~~~~~~~~~ 278 (287)
.+++.....|+++.
T Consensus 83 ~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 83 LLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHCCCHH
T ss_pred HHHHHHHhCCCcHH
Confidence 55555554444443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.72 E-value=1.5e-07 Score=65.23 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----hhHHHHHHHHHHhcCchHHHHHHHHHHhhC----CCcC-CHHH
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVV-PD----FISYNTLLNNLRKIRRLDLCLIYFREMGES----GIKP-DLLT 210 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 210 (287)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444555555555555444322100 01 124455555566666666666666555431 1011 1335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCc-chHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQQ----QIRP-SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556666777777777777777766532 1111 1345666677777788888888888777554
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.72 E-value=1.4e-06 Score=57.97 Aligned_cols=92 Identities=9% Similarity=0.036 Sum_probs=42.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc---HHHHHHHHH
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVSSRTLSS---DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPES---IIVVNRIIF 111 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 111 (287)
.+...+...|++++|...|++..+.... +. ..+..+..++...|++++|...++++.+.. +.+ ..++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3444444455555555555554443211 11 234444444555555555555555554443 122 334444555
Q ss_pred HHHhcCCHHHHHHHHHHHhc
Q 023133 112 AFAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~ 131 (287)
++...|++++|...|+++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.69 E-value=4.4e-07 Score=75.10 Aligned_cols=118 Identities=10% Similarity=0.019 Sum_probs=54.1
Q ss_pred HHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHH
Q 023133 42 ASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEK 121 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 121 (287)
.+.+.|++++|++.+++.++.. +.+...+..+..++.+.|++++|++.+++..+.. +.+..++..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555555555432 2234445555555555555555555555555543 3344455555555555555555
Q ss_pred HHHHHHHHhcCCCCCCHhhHHHHHHH--HHhcCCHHHHHHHHH
Q 023133 122 ALLIFDHIKGLKCKPDLITYNIVLDI--LGRVGRVNDMLNEFA 162 (287)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 162 (287)
|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555544432 1122233333333 444455555555544
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.69 E-value=7.6e-08 Score=79.63 Aligned_cols=117 Identities=12% Similarity=0.009 Sum_probs=55.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEES 227 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 227 (287)
+.+.|++++|.+.|++..+.... +..+|..+..++.+.|++++|.+.+++..+.. +.+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455555555555555444221 34455555555555555555555555555442 22344555555555555555555
Q ss_pred HHHHHHHHhCCCCcchHhHHHHHHH--HHhcCChHHHHHHHH
Q 023133 228 LRLFNDMKQQQIRPSIYVYRSLIDN--LKKMGKVDLAMTIFE 267 (287)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 267 (287)
.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555431 1122233333333 455555555555555
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.68 E-value=4.5e-07 Score=60.48 Aligned_cols=93 Identities=17% Similarity=0.017 Sum_probs=51.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh---hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC---HHHHHHHHH
Q 023133 143 IVLDILGRVGRVNDMLNEFASMKEAGVVPDF---ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPD---LLTYTALID 216 (287)
Q Consensus 143 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 216 (287)
.+...+...|++++|...|+...+.... +. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3445555666666666666666554321 12 345555556666666666666666665442 111 344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 023133 217 SFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 217 ~~~~~g~~~~a~~~~~~~~~~ 237 (287)
++...|++++|...|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666665543
No 180
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=5.6e-05 Score=62.71 Aligned_cols=205 Identities=10% Similarity=-0.004 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHh
Q 023133 52 SFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKAL-LIFDHIK 130 (287)
Q Consensus 52 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 130 (287)
+..+|++++.. .+.+...|...+.-+.+.|+.+.|..++++.+.. |.+...|.. |....+.++.. .+.+...
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHH
Confidence 34455555443 2334555555555556666666666666666665 333333322 11111111111 1111110
Q ss_pred cCC-----C---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-cCchHHHHHHHHHHhh
Q 023133 131 GLK-----C---KPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK-IRRLDLCLIYFREMGE 201 (287)
Q Consensus 131 ~~~-----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~ 201 (287)
... . ......|...+....+.+..+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+...+
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~ 348 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 000 0 001134555555556677889999999988 32 12233444332222222 2368999999998876
Q ss_pred CCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 202 SGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
.. +-+...+...++.....|+.+.|..+|+++. .....|...+.--...|+.+.+.++++++..
T Consensus 349 ~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 349 KH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 42 2234455666777778899999999999873 2567788888777778999999999988864
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.63 E-value=3.9e-07 Score=63.16 Aligned_cols=133 Identities=10% Similarity=0.043 Sum_probs=90.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCC-CC----HHHHHHHHHHHhccCChHHHHHHHHHHHhcCC----C-CcH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRT-LS----SDCYTNFARAFIMTDDCTQLLIFIEEVVQIAS----P-ESI 103 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~ 103 (287)
.++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+... + ...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777777777888888888887776643211 11 13566677777888888888888877654321 1 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGL----KCKP-DLITYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
.++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|...+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56777788888888888888888776532 1111 133567777888888888888888887654
No 182
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.63 E-value=2e-07 Score=65.15 Aligned_cols=99 Identities=6% Similarity=-0.072 Sum_probs=66.6
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC---------CCChhHHHHHHHHHHhcCchHHHHHHHHHHh
Q 023133 138 LITYNIVLDILGRVGRVNDMLNEFASMKEA--------GV---------VPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 138 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 200 (287)
...+......+.+.|++++|+..|...... .. +.+...|..+..+|.+.|++++|...+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445677777888888888888888887654 00 0123456666667777777777777777776
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 023133 201 ESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ 237 (287)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 237 (287)
+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 653 345566667777777777777777777776654
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.57 E-value=2e-06 Score=70.77 Aligned_cols=150 Identities=8% Similarity=-0.016 Sum_probs=102.8
Q ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---------------HhhHHHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD---------------LITYNIVLD 146 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~ 146 (287)
+++++|...|+...+.. +.....+..+...|.+.|++++|...|++..+.. +.+ ...|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333222 2345556666666666666666666666665432 111 467888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE 226 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (287)
+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887543 67888889999999999999999999998763 3345578888888888888887
Q ss_pred HHH-HHHHHH
Q 023133 227 SLR-LFNDMK 235 (287)
Q Consensus 227 a~~-~~~~~~ 235 (287)
+.+ .+..|.
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 764 455554
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.57 E-value=2.1e-06 Score=68.52 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcC---------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIA---------------SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKC 134 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 134 (287)
.+..+...+.+.|++++|+..+++.++.- .+.+..+|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 35556666777777777777777766520 12234455555666666666666666666655542
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH
Q 023133 135 KPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 135 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 192 (287)
+.+...|..+..+|...|++++|...|++..+.... +...+..+...+...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 223445555555566666666666666655554321 334444444444444444433
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.55 E-value=1e-06 Score=70.32 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHH
Q 023133 68 SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDI 147 (287)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (287)
...|..+..++.+.|++++|+..++++++.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4455666666666677777777776666654 3455666666666777777777777776665542 2244455555555
Q ss_pred HHhcCCHHHHH
Q 023133 148 LGRVGRVNDML 158 (287)
Q Consensus 148 ~~~~~~~~~a~ 158 (287)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.54 E-value=4.2e-07 Score=71.71 Aligned_cols=154 Identities=10% Similarity=0.031 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 103 IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 103 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
...+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455666777777778888888888776654 343321 223333343332221 1377888899
Q ss_pred HHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHH-HHhcCChH
Q 023133 183 LRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDN-LKKMGKVD 260 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~-~~~~g~~~ 260 (287)
+.+.|++++|...+++.++.. +.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998764 446788999999999999999999999998864 343 4445545444 33456778
Q ss_pred HHHHHHHHHhhcCCCCCC
Q 023133 261 LAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~ 278 (287)
.+...|++|....|..+.
T Consensus 317 ~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHhhCCCCCCCC
Confidence 889999999888876654
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.53 E-value=3e-06 Score=59.07 Aligned_cols=98 Identities=12% Similarity=0.023 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhc-----------------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSS-----------------RTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQ 96 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (287)
..+......+.+.|++++|+..|.+.+..- .+.+...|..+..++.+.|++++|+..+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 356667777778888888888887776530 011123444455555555555555555555555
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 97 IASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 44 344455555555555555555555555555443
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.50 E-value=1.7e-06 Score=59.47 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCcc-hHhH----HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 210 TYTALIDSFGRTGNIEESLRLFNDMKQQ-----QIRPS-IYVY----RSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 210 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
.|..+..++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|+..|++.....|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 6777777888888888888888877763 11444 4566 77888888888899998888888877776554
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=2e-05 Score=66.53 Aligned_cols=174 Identities=10% Similarity=-0.008 Sum_probs=126.3
Q ss_pred ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcC
Q 023133 83 DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ----------IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVG 152 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (287)
..++|++.++++++.. |.+..+|+.--..+.+.|+ ++++.+.++.+.+.. +.+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3456788888888776 5566777776666666666 888888888887664 446667877777777778
Q ss_pred --CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc--------
Q 023133 153 --RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIR-RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT-------- 221 (287)
Q Consensus 153 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 221 (287)
+++++++.++++.+.... +..+|+.-...+.+.| .++++.+.+.++.+.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 678888888888887655 7778877777777777 7888888888888765 44677777766666552
Q ss_pred ------CCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHH
Q 023133 222 ------GNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDL 261 (287)
Q Consensus 222 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (287)
+.++++++.+++..+.. +-|...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45788888888888653 3456677777666666666444
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.49 E-value=3e-07 Score=60.44 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=10.3
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLL 60 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 60 (287)
++..+..++...|++++|+..+++.+
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al 54 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGV 54 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333333334444444444443333
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.48 E-value=1.2e-06 Score=69.10 Aligned_cols=96 Identities=7% Similarity=-0.017 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH-H
Q 023133 105 VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN-L 183 (287)
Q Consensus 105 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 183 (287)
.|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 56667777777777777777777766543 235556777777777777777777777776554321 33344444333 2
Q ss_pred HhcCchHHHHHHHHHHhhC
Q 023133 184 RKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~ 202 (287)
...+..+.+...|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 2345566666777766544
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.48 E-value=1.9e-06 Score=71.12 Aligned_cols=123 Identities=8% Similarity=-0.057 Sum_probs=76.0
Q ss_pred hcCChhHHHHHHHHHHHhc---CCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHhc-----C--CCCcHHHHHHHH
Q 023133 45 ETNDIDLSFQILKDLLVSS---RTL----SSDCYTNFARAFIMTDDCTQLLIFIEEVVQI-----A--SPESIIVVNRII 110 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 110 (287)
..|++++|+.++++.++.. +.| ...+++.|..+|...|++++|..++++.++. | .+....+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5567777777766665431 112 1345666777777777777777777665532 2 223456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-----CCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 111 FAFAKSRQIEKALLIFDHIKG-----LKC-KPD-LITYNIVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
..|...|++++|+.++++..+ .|. .|+ ..+.+.+-.++...+.+++|..++..+++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888887777766542 231 122 234556666677777788888888777653
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=2.7e-05 Score=65.71 Aligned_cols=176 Identities=11% Similarity=0.057 Sum_probs=136.6
Q ss_pred hcCC-hhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCC----------hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 023133 11 KAGN-VSAAVRLLQSLRDKNIFLPNAYNCVLVASAETND----------IDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79 (287)
Q Consensus 11 ~~g~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (287)
+.|+ .++|++.++.+...++....+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444 4677999999999887666888887777777777 899999999998864 336777887777777
Q ss_pred ccC--ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhc-----
Q 023133 80 MTD--DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR-QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRV----- 151 (287)
Q Consensus 80 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 151 (287)
+.+ +++++++.++++.+.. +.+..+|+.-...+.+.| .++++.+.++++.+.. +-+...|+.....+.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccc
Confidence 888 6799999999999987 677888888888888888 8999999999988775 34667787776666553
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchH
Q 023133 152 ---------GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190 (287)
Q Consensus 152 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (287)
+.++++++.+......... |...|...-..+.+.+..+
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 5578899999888876544 6777887777777666643
No 194
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.45 E-value=6.2e-05 Score=62.48 Aligned_cols=204 Identities=11% Similarity=-0.005 Sum_probs=138.5
Q ss_pred hHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 023133 16 SAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVV 95 (287)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 95 (287)
+.+..+|++.....+..+..|...+..+.+.|+.+.|..++++.... +.+...+.. +....+.++. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHH
Confidence 45677899988877666688988899999999999999999999987 333333322 2221111121 22222
Q ss_pred hcC------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHH
Q 023133 96 QIA------------SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGR-VGRVNDMLNEFA 162 (287)
Q Consensus 96 ~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~ 162 (287)
+.- ......+|...+....+.++.+.|..+|++. +.. ..+...|......-.. .++++.|..+|+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 110 0112356777888887889999999999999 321 1233344322222222 336999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
...+.... +...+...+....+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+.+++++..+
T Consensus 345 ~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 345 SGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 98875322 344556677777888999999999999732 467788888877888999999999988874
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.44 E-value=1.2e-05 Score=54.51 Aligned_cols=110 Identities=10% Similarity=-0.017 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCchHHHH
Q 023133 118 QIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK----IRRLDLCL 193 (287)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 193 (287)
++++|.+.|++..+.| .|+.. |...|...+.+++|.+.|++..+.| +...+..+...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555554443 12221 3344444444555555555554443 33444444444444 45555555
Q ss_pred HHHHHHhhCCCcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 023133 194 IYFREMGESGIKPDLLTYTALIDSFGR----TGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 238 (287)
++|++..+.| +...+..|...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555443 33444445555554 455555555555555543
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.40 E-value=1.1e-05 Score=55.42 Aligned_cols=94 Identities=11% Similarity=0.031 Sum_probs=47.8
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC------CH-----HHHHHHHHHHhccCChHHHHHHHHHHHhc------
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTL------SS-----DCYTNFARAFIMTDDCTQLLIFIEEVVQI------ 97 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 97 (287)
.+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34555556667777777777777776543220 11 14444555555555555555555555443
Q ss_pred -CCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHH
Q 023133 98 -ASPESIIVV----NRIIFAFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 98 -~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~ 129 (287)
. |.+...| .....++...|++++|+..|++.
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 3 2233344 44444444444444444444444
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.39 E-value=2.7e-05 Score=52.68 Aligned_cols=112 Identities=9% Similarity=-0.070 Sum_probs=94.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh----cCCHHH
Q 023133 151 VGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR----TGNIEE 226 (287)
Q Consensus 151 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 226 (287)
.+++++|...|++..+.|. |+. . +...|...+..++|.++|++..+.| +...+..|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 3468999999999998873 333 3 7777888888999999999998875 66788888888988 899999
Q ss_pred HHHHHHHHHhCCCCcchHhHHHHHHHHHh----cCChHHHHHHHHHHhhcC
Q 023133 227 SLRLFNDMKQQQIRPSIYVYRSLIDNLKK----MGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 227 a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 273 (287)
|.++|++..+.| +...+..|...|.. .+++++|.++|++..+..
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999999876 66777888888888 899999999999997763
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.34 E-value=3.5e-06 Score=69.53 Aligned_cols=125 Identities=8% Similarity=-0.046 Sum_probs=95.7
Q ss_pred HhccCChHHHHHHHHHHHhc-----C--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCC-CCC-HhhHHH
Q 023133 78 FIMTDDCTQLLIFIEEVVQI-----A--SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKG-----LKC-KPD-LITYNI 143 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~ 143 (287)
+...|++++|+.++++.++. | .+....+++.|...|...|++++|+.++++..+ .|. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44679999999999887653 2 123467899999999999999999999987653 221 233 347899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----cCCC-CC-hhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 144 VLDILGRVGRVNDMLNEFASMKE-----AGVV-PD-FISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 144 l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
|...|...|++++|..++++..+ .|.. |+ ..+...+-.++...+.+++|..+|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998753 2322 22 345566777888899999999999998763
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=8.5e-07 Score=57.36 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=53.9
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-------hH
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-------IY 244 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 244 (287)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|++.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455566666666677777777666666543 335556666666777777777777777776654 233 33
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~ 267 (287)
.+..+..++...|++++|...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 44444445555555554444433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.24 E-value=6e-06 Score=53.82 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+|+..|++..+.... +...+..+...+...|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466677777665432 56777778888888888888888888887653 3456677788888888888888888888877
Q ss_pred hC
Q 023133 236 QQ 237 (287)
Q Consensus 236 ~~ 237 (287)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-06 Score=56.55 Aligned_cols=62 Identities=6% Similarity=0.066 Sum_probs=31.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.+..+...+...|++++|...+++..+.. +.+..++..+..++.+.|++++|...+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444444555555555555555555443 334444555555555555555555555555443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.19 E-value=2.1e-05 Score=51.21 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHh
Q 023133 17 AAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQ 96 (287)
Q Consensus 17 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 96 (287)
+|+..|++..+.++..+..+..+...+...|++++|+..+++.+... +.+...+..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666554444666666666777777777777776666543 23455566666666666777777666666654
Q ss_pred c
Q 023133 97 I 97 (287)
Q Consensus 97 ~ 97 (287)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.12 E-value=5e-05 Score=46.75 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 106 VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333444444444444443333321 1122333333333444444444444444433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=4.5e-05 Score=46.97 Aligned_cols=62 Identities=13% Similarity=0.275 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.+..+...+...|++++|...+++..+.. +.+..++..+...+.+.|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444455555555555555555555443 334445555555555555555555555555443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.08 E-value=2e-05 Score=54.04 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhcCCCCCCHhhH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR-----------QIEKALLIFDHIKGLKCKPDLITY 141 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~ 141 (287)
+++|+..|++.++.. |.+..+|..+..+|.+.| ++++|.+.|++..+. .|+...|
T Consensus 62 ~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 62 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 446677777766665 445566666766666653 566666666666554 3554444
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.03 E-value=2.2e-05 Score=53.84 Aligned_cols=98 Identities=13% Similarity=0.006 Sum_probs=65.1
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHH
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQ----------IEKALLIFDHIKGLKCKPDLITYNIVLDILG 149 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (287)
+.+.+++|.+.++...+.. |.+...|..+..++...++ +++|+..|++..+.. +.....|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3455677777777777765 5667777777777776665 458888888877663 335567777888877
Q ss_pred hcC-----------CHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 023133 150 RVG-----------RVNDMLNEFASMKEAGVVPDFISYNTLLN 181 (287)
Q Consensus 150 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 181 (287)
..| ++++|+..|++..+. .|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 664 677777777777664 355544444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.99 E-value=2.7e-05 Score=49.33 Aligned_cols=64 Identities=17% Similarity=0.181 Sum_probs=48.2
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777778888888888888888877653 33456777788888888888888888887764
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=0.00014 Score=45.95 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 129 (287)
.+..+..++...|++++|+..|+++++.. +.+..+|..+..+|...|++++|.+.|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444444433 223334444444444444444444444433
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.85 E-value=0.00047 Score=54.15 Aligned_cols=71 Identities=15% Similarity=-0.011 Sum_probs=53.1
Q ss_pred cCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 023133 205 KPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLA 277 (287)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (287)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|+++....|..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 4566677777666666788888888888888764 6766676677777788888888888888888777554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.83 E-value=0.0011 Score=52.07 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=38.5
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhH
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVY 246 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 246 (287)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|...+|
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 44455554444444566666666666665553 45555555555555666666666666655543 3444443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=0.00025 Score=48.08 Aligned_cols=90 Identities=10% Similarity=0.017 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCc--chHhHHHHHHHHHhcCChHHHHH
Q 023133 190 DLCLIYFREMGESGIKPDLLTYTALIDSFGRTG---NIEESLRLFNDMKQQQIRP--SIYVYRSLIDNLKKMGKVDLAMT 264 (287)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~ 264 (287)
..+.+-|.+..+.| .++..+...+..++.+++ +.++++.+|+...+.. .| +...+-.+.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 34444555444444 356666666666666666 4556666666666543 23 23444455556666777777777
Q ss_pred HHHHHhhcCCCCCChhh
Q 023133 265 IFEEMNSSLSDLAGPKD 281 (287)
Q Consensus 265 ~~~~~~~~~~~~~~~~~ 281 (287)
+++++.+..|++....+
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 77777666666654433
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.82 E-value=3.9e-05 Score=48.26 Aligned_cols=89 Identities=9% Similarity=0.105 Sum_probs=54.5
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc-hHhHHHHHHHHHhc
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLL-TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS-IYVYRSLIDNLKKM 256 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~ 256 (287)
....+.+.|++++|...+++..+.. +.+.. .+..+..+|...|++++|.+.|++..+.. |+ ...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN--PDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHH--------
Confidence 3445566777777777777776653 33455 66777777777777777777777777642 32 222211
Q ss_pred CChHHHHHHHHHHhhcCCCCCC
Q 023133 257 GKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 257 g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
+.+.++...|++.....|+.+.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 4566666666666555554443
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.67 E-value=8.8e-05 Score=60.26 Aligned_cols=87 Identities=8% Similarity=-0.064 Sum_probs=67.8
Q ss_pred hcCchHHHHHHHHHHhh---CCCc---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCcc-hHhHHHHH
Q 023133 185 KIRRLDLCLIYFREMGE---SGIK---PD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQ-----Q-IRPS-IYVYRSLI 250 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~---~~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~li 250 (287)
..|++++|..++++.++ .-+. |+ ..+++.|..+|...|++++|..++++..+- | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999999988764 1122 22 357899999999999999999999988742 2 2344 45789999
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 023133 251 DNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~ 271 (287)
..|...|++++|..+++++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999854
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.65 E-value=0.00018 Score=58.53 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=71.1
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCC---CcCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCcc-hH
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESG---IKPD----LLTYTALIDSFGRTGNIEESLRLFNDMKQQ-----Q-IRPS-IY 244 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~ 244 (287)
.+..+.+.|++++|..++++..+.. +.|+ ..+++.|..+|...|++++|+.++++.++- | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667889999999999887531 1222 457888999999999999999999988642 2 2333 45
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
+++.|...|...|++++|..+++++.+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688899999999999999999998844
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.59 E-value=0.00033 Score=56.88 Aligned_cols=85 Identities=6% Similarity=-0.087 Sum_probs=55.3
Q ss_pred CChhHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhc-----C--CCCcHHHHHHHHHH
Q 023133 47 NDIDLSFQILKDLLVSS---RTLS----SDCYTNFARAFIMTDDCTQLLIFIEEVVQI-----A--SPESIIVVNRIIFA 112 (287)
Q Consensus 47 ~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~ 112 (287)
|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.++++.++. | .+....+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 45677777766665421 2222 346677777777777777777777766532 2 22345677888888
Q ss_pred HHhcCCHHHHHHHHHHHhc
Q 023133 113 FAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~ 131 (287)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 8888888888888877643
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.59 E-value=0.0014 Score=40.59 Aligned_cols=51 Identities=10% Similarity=-0.037 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 023133 224 IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSD 275 (287)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (287)
.++|..++++..+.. +-+......+...+.+.|++++|...|+++....|.
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 344555555544431 223334444444444555555555555555444444
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.58 E-value=0.00053 Score=55.73 Aligned_cols=86 Identities=8% Similarity=-0.038 Sum_probs=50.8
Q ss_pred hcCChhHHHHHHHHHHHhc---CCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHhc-----C--CCCcHHHHHHHH
Q 023133 45 ETNDIDLSFQILKDLLVSS---RTLS----SDCYTNFARAFIMTDDCTQLLIFIEEVVQI-----A--SPESIIVVNRII 110 (287)
Q Consensus 45 ~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 110 (287)
+.|++++|+.++++.++.. ..|+ ..+++.+..+|...|++++|+.+++++++. | .+....+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4456666666666665321 1121 235566666666677777777666665432 1 122345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 023133 111 FAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~ 130 (287)
..|...|++++|+.++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 77777777777777776654
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.56 E-value=0.00046 Score=43.19 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=56.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCcchH-hHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChh
Q 023133 214 LIDSFGRTGNIEESLRLFNDMKQQQIRPSIY-VYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPK 280 (287)
Q Consensus 214 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (287)
....+...|++++|...+++..+.. +.+.. .+..+..++...|++++|.+.|+++....|+.+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4567788999999999999998763 33556 888899999999999999999999999999876543
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.54 E-value=0.00093 Score=42.45 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCC------CcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 172 DFISYNTLLNNLRKIRRLDLCLIYFREMGESG------IKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+...+..+...+.+.++++.|...|+...+.. -.+....+..|..++.+.|+++.|...++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444455555566666666666665554320 112334455555556666666666666665554
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.52 E-value=0.0065 Score=53.57 Aligned_cols=154 Identities=11% Similarity=0.122 Sum_probs=89.4
Q ss_pred HHhhcCChhHHHH-HHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHH
Q 023133 42 ASAETNDIDLSFQ-ILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIE 120 (287)
Q Consensus 42 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 120 (287)
.....+++++|.+ ++.. .|+......++..+.+.|.++.|.++.+. +. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3445677777765 4311 11122235566667777777777765421 11 1123355678888
Q ss_pred HHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHh
Q 023133 121 KALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 200 (287)
+|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...+...|+.+...++.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888876543 4567888888888888888888888887653 2344444445666666555555544
Q ss_pred hCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 201 ESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
..| -++....+|.+.|++++|.+++.++
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 443 1233333455556666666665554
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.41 E-value=0.0044 Score=38.36 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHhccCC---hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 66 LSSDCYTNFARAFIMTDD---CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.+...+..+..++...++ .++|..++++.++.. +.++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555543332 566777777776665 455666666666677777777777777776665
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.34 E-value=0.0022 Score=41.85 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCc--chHhHHHHHHHHHhcCChHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEE---SLRLFNDMKQQQIRP--SIYVYRSLIDNLKKMGKVDLA 262 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a 262 (287)
....+.+-|.+....| .|+..+-..+..++.++.+... ++.+++.+.+.+ .| .....-.+.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344455555444433 3555555556666666665444 666666666543 22 233444455566777777777
Q ss_pred HHHHHHHhhcCCCCCChhh
Q 023133 263 MTIFEEMNSSLSDLAGPKD 281 (287)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~ 281 (287)
.++++.+++..|++.....
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 7777777777776655443
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.28 E-value=0.023 Score=50.06 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=84.5
Q ss_pred HHhccCChHHHHH-HHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHH
Q 023133 77 AFIMTDDCTQLLI-FIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN 155 (287)
Q Consensus 77 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (287)
.....+++++|.+ ++.. ++ +......++..+.+.|.+++|.++.+. |. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHH
Confidence 3345678888766 4421 12 122337788888899999998876632 11 1134456789999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+|.++.+.+ .+...|..+...+.+.++++.|.++|.++.. |..+...+...|+.+...++-+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 999886543 3678999999999999999999999998763 2233444444555555555544444
Q ss_pred hC
Q 023133 236 QQ 237 (287)
Q Consensus 236 ~~ 237 (287)
..
T Consensus 735 ~~ 736 (814)
T 3mkq_A 735 TT 736 (814)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.007 Score=41.01 Aligned_cols=83 Identities=13% Similarity=0.101 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC---ChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhccCChHHHHH
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN---DIDLSFQILKDLLVSSRTL--SSDCYTNFARAFIMTDDCTQLLI 89 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 89 (287)
...+.+-|.+....+.....+...+..++++.+ ++++++.++++..+.. .| ....+-.+..++.+.++++.|.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344445555554444433355555555555555 4446666666665543 12 23333445555566666666666
Q ss_pred HHHHHHhcC
Q 023133 90 FIEEVVQIA 98 (287)
Q Consensus 90 ~~~~~~~~~ 98 (287)
.++.+++..
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 666665553
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.09 E-value=0.0051 Score=38.93 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023133 69 DCYTNFARAFIMTDDCTQLLIFIEEVVQIA------SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 69 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 131 (287)
..+..+...+.+.+++..|..+++...+.. -.+...++..+..+|.+.|+++.|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555544321 112344455555555555555555555555544
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.94 E-value=0.079 Score=40.15 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-Cch
Q 023133 119 IEKALLIFDHIKGLKCKPD---LITYNIVLDILGRV-----GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKI-RRL 189 (287)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 189 (287)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34555555555544 233 33555566556553 66666666666665543321244555555555553 666
Q ss_pred HHHHHHHHHHhhCCCc
Q 023133 190 DLCLIYFREMGESGIK 205 (287)
Q Consensus 190 ~~a~~~~~~~~~~~~~ 205 (287)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666655444
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.054 Score=37.71 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=95.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchH
Q 023133 111 FAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLD 190 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 190 (287)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4567889999999998765 4788999999999999999999999988664 345555666678888
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+...+-+.....| -++....++...|+++++.++|.+.-+ .|... ......|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 8777766666554 245556667778999999999865432 22211 1122367788899998877
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.77 E-value=0.054 Score=35.70 Aligned_cols=140 Identities=13% Similarity=0.066 Sum_probs=90.4
Q ss_pred hccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 023133 79 IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDML 158 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 158 (287)
.-.|..++..++..+..... +..-+|-+|--....-+-+-..++++.+-+ ..|... .|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis~----------C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLDK----------CQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGGG----------CSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCcHh----------hhcHHHHH
Confidence 34577777777777776643 344455555444455555666666666544 234322 33333333
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 159 NEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
..+-.+- .+...+...+......|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3332221 24456677778888889999988888886543 37788888888999999999999999999988887
Q ss_pred CC
Q 023133 239 IR 240 (287)
Q Consensus 239 ~~ 240 (287)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.76 E-value=0.02 Score=43.34 Aligned_cols=63 Identities=6% Similarity=-0.033 Sum_probs=29.1
Q ss_pred HHHHHHHHHhc-----cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcC
Q 023133 70 CYTNFARAFIM-----TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKS-RQIEKALLIFDHIKGL 132 (287)
Q Consensus 70 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 132 (287)
.|..+...|.. .|+.++|.+.|++.++.+..-+..++....+.++.. |+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 34444444444 245555555555555544212244444444444442 4555555555555444
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.70 E-value=0.062 Score=35.43 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=70.2
Q ss_pred HHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHH
Q 023133 9 LCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLL 88 (287)
Q Consensus 9 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 88 (287)
+.-.|.+++-.++..+........ -||.+|--....-+-+-..++++.. |-..|.. ..++.....
T Consensus 17 ~ildG~v~qGveii~k~~~ssni~--E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSSTKS--EYNWFICNLLESIDCRYMFQVLDKI---GSYFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHH--HHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCGG----------GCSCTHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCCCcc--ccceeeeecchhhchhHHHHHHHHH---hhhcCcH----------hhhcHHHHH
Confidence 455788999999998887665433 4555555555554544444444443 3222221 112222222
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023133 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168 (287)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 168 (287)
.-+-.+ ..+.......++.....|.-++-.+++..+.... +|+....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 222111 1222334444555555555555555555542221 4455555555555556666666665555555555
Q ss_pred C
Q 023133 169 V 169 (287)
Q Consensus 169 ~ 169 (287)
+
T Consensus 156 ~ 156 (172)
T 1wy6_A 156 E 156 (172)
T ss_dssp C
T ss_pred h
Confidence 4
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.085 Score=36.71 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=92.8
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHH
Q 023133 76 RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVN 155 (287)
Q Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (287)
......|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|.+... +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4566789999999987765 5688999999999999999999999998763 345556677788888
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 156 DMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+..++-+.....| -++.....+.-.|+++++.++|.+.-. -|.... .....|..+.|.++.+.+-
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 7776665555544 245556666678999999999865432 221111 1223566777888877653
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.34 E-value=0.095 Score=34.39 Aligned_cols=78 Identities=6% Similarity=0.023 Sum_probs=48.9
Q ss_pred cCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCChhh
Q 023133 205 KPDLLTYTALIDSFGRTGN---IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGPKD 281 (287)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (287)
.|+..+--.+..++.++.+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+..|++.....
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 5666665556666666554 3456777777765541123445555666777777777777777777777777665444
Q ss_pred H
Q 023133 282 F 282 (287)
Q Consensus 282 ~ 282 (287)
.
T Consensus 117 L 117 (134)
T 3o48_A 117 L 117 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.09 Score=35.35 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=8.1
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 023133 149 GRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~ 167 (287)
.+.|+...|.+++......
T Consensus 105 iRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 105 LSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHhcc
Confidence 3444444444444444443
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.29 E-value=0.11 Score=34.96 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 023133 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 241 (287)
++.++|.++|+.+.+.+-.. ...|....+--.+.|++..|.+++.+.+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 66777777777775443233 4455555555567777777777777777655433
No 235
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.28 E-value=0.44 Score=42.47 Aligned_cols=257 Identities=8% Similarity=-0.025 Sum_probs=124.9
Q ss_pred HHHhcCChhHHHHHHHHHhhcC-CCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcC-------CCCHHHHHHHHHH
Q 023133 8 KLCKAGNVSAAVRLLQSLRDKN-IFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSR-------TLSSDCYTNFARA 77 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~ 77 (287)
+....|+.++++.+++.....+ ...+ ..=..+.-+.+..|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455677777777777655422 1111 2222333344555555567777766654321 0111111222222
Q ss_pred --HhccCChHHHHHHHHHHHhcCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 78 --FIMTDDCTQLLIFIEEVVQIASPESIIVVN--RIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 78 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
+.-.++ +++...+..++... ........ ++...+.-.|+-+....++..+.+.. .-+..-...+.-++...|+
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 222333 34445555544422 11111112 23333445566666666666655421 1111122223333446677
Q ss_pred HHHHHHHHHHHHHcCCCCChhHH--HHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 154 VNDMLNEFASMKEAGVVPDFISY--NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 231 (287)
.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 777777777776531 2222111 123445667777766666777776542 223333444444455566666666666
Q ss_pred HHHHhCCCCcchHhHHHHHHHHHhcCCh-HHHHHHHHHHh
Q 023133 232 NDMKQQQIRPSIYVYRSLIDNLKKMGKV-DLAMTIFEEMN 270 (287)
Q Consensus 232 ~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~ 270 (287)
+.+.+.+ .|.+..-..+.-+....|.. .++.+.+..+.
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 6555543 45555555555555555543 46666666664
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.071 Score=46.33 Aligned_cols=125 Identities=14% Similarity=0.082 Sum_probs=82.3
Q ss_pred HHHHHHhcCC-hhHHHHHHHHHhhcCCCCch-hHHHHHHHHhhcC-ChhHHHHHHHHHHHh------cCCCC-H------
Q 023133 5 YIEKLCKAGN-VSAAVRLLQSLRDKNIFLPN-AYNCVLVASAETN-DIDLSFQILKDLLVS------SRTLS-S------ 68 (287)
Q Consensus 5 li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~-~------ 68 (287)
|+..+...|+ .+.|..+|+++...++.... ....++..+...+ +--+|.+++.+.++. ..++. .
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 4445555666 58899999999888754432 2223333333333 233455666555432 11211 1
Q ss_pred ----HHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 69 ----DCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 69 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
...+.-..-|...|+++.|+++-++..... |.+=.+|..|..+|.+.|+++.|+-.+..+.
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222344667899999999999998875 5677899999999999999999999998874
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.21 E-value=0.05 Score=35.47 Aligned_cols=67 Identities=18% Similarity=0.152 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHhccCChHH---HHHHHHHHHhcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 66 LSSDCYTNFARAFIMTDDCTQ---LLIFIEEVVQIASP-ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
|+..+-..+.-++.+..+... ++.+++.+.+.+.+ ......-.|.-++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444444444444444443333 45555555444311 12222333444555555555555555555543
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.13 Score=44.76 Aligned_cols=128 Identities=13% Similarity=0.059 Sum_probs=82.1
Q ss_pred HHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHhc------CCC-Cc-----
Q 023133 37 NCVLVASAETND-IDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD-DCTQLLIFIEEVVQI------ASP-ES----- 102 (287)
Q Consensus 37 ~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~-~~----- 102 (287)
..++..+...++ .+.|..+++++.......+......++..+...+ +--+|.+++.+.++. ..+ .+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344455555566 5889999999987642222222233344433333 233455555554421 111 11
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 103 -----IIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMK 165 (287)
Q Consensus 103 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 165 (287)
....+.-.+.+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1234444566778999999999999987762 3356799999999999999999999998873
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.82 E-value=0.23 Score=33.08 Aligned_cols=75 Identities=7% Similarity=0.022 Sum_probs=36.2
Q ss_pred cCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCh
Q 023133 205 KPDLLTYTALIDSFGRTGN---IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSLSDLAGP 279 (287)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (287)
.|+..+--.+..++.++.+ ..+++.+++.+.+.+..-.....-.+.-++.+.|++++|.++.+.+++..|++...
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3444444444445554443 23455555555543211123333344445556666666666666666655555443
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.69 E-value=4.1e-05 Score=61.72 Aligned_cols=242 Identities=11% Similarity=0.050 Sum_probs=142.9
Q ss_pred ChHHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 1 MCNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 1 ~y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
||+.|..+....|++.+|++-|=+ ..++ ..|..++.+..+.|.+++-+..+.-.++..-.| ..=+.|+-+|++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIk--A~Dp---s~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIK--ADDP---SSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCC--CSCC---CSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred HHHHHHHHHHccCchHHHHHHHHh--CCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 566777777777777777665522 2222 267777788888888887777776555443233 333457777777
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--------------------CCCCHhh
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK--------------------CKPDLIT 140 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~ 140 (287)
.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+.... -..+..|
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 777664433321 2444444556666666676666666665443211 0235567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
|..+-.+|...+.+.-|.-.--.+.-. | .-...++..|...|.+++-+.+++.-.... +...-.|+-|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 777777777777766555443333321 1 123346667788888888888888776432 5677788888888887
Q ss_pred cCCHHHHHHHHHHHHhC-CCCc------chHhHHHHHHHHHhcCChHHHH
Q 023133 221 TGNIEESLRLFNDMKQQ-QIRP------SIYVYRSLIDNLKKMGKVDLAM 263 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~li~~~~~~g~~~~a~ 263 (287)
- ++++..+.++..-.+ +++. ....|.-++-.|.+-.+++.|.
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 5 445544444433221 2211 2334666666666666666543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.30 E-value=0.42 Score=38.19 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH-----hcCCCCcHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVV-----QIASPESIIVVN 107 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 107 (287)
+...++..+...|++++++..+..+... .+.+...+..++.++.+.|+..+|++.|+... +.|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4556666777778888887777777654 34566777777888888888888887777654 347777665443
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=95.07 E-value=1.6 Score=40.34 Aligned_cols=190 Identities=13% Similarity=0.078 Sum_probs=113.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------------
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP----------------- 136 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 136 (287)
++..+...+..+.+.++... .+.+...--.+..+|...|++++|.+.|.+... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 44445555555555443322 234455556677889999999999999977532 1100
Q ss_pred ------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcC
Q 023133 137 ------DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDF----ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206 (287)
Q Consensus 137 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 206 (287)
-..-|..++..+.+.+.++.+.++-....+....-+. ..|..++..+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0122567788888889999888877766554222121 2578899999999999999999988876533
Q ss_pred CHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHhCC--CCcchHhHHHHHHHHHhcCChHHH-HHHHHHHhh
Q 023133 207 DLLTYTALIDSFGRTGNI------------EESLRLFNDMKQQQ--IRPSIYVYRSLIDNLKKMGKVDLA-MTIFEEMNS 271 (287)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~------------~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~ 271 (287)
-......|+...+..|.. ++..+++....+.. ....+.-|..|-.-+...|++..| .-+|+.+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 345566666666655544 44444444322211 111112344444445667777654 445555533
No 243
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.56 Score=38.07 Aligned_cols=97 Identities=14% Similarity=-0.006 Sum_probs=60.3
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHhc---CCCCcHHH--H
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTL--SSDCYTNFARAFIMTDDCTQLLIFIEEVVQI---ASPESIIV--V 106 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 106 (287)
.++..+...|.+.|+++.|.+.+.++......+ -...+-.+++.+...+++..+...+.++... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 577778888888888888888888877653333 2456666777778888888888877776432 22222211 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 107 NRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 107 ~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
..-+..+...+++..|...|-+..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHh
Confidence 111122345677777777776553
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.01 E-value=1.9 Score=38.66 Aligned_cols=225 Identities=10% Similarity=0.001 Sum_probs=128.6
Q ss_pred HHHHhcCChhHHHHHHHHHhhcCC-------CCc-hhHHHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHH--HHH
Q 023133 7 EKLCKAGNVSAAVRLLQSLRDKNI-------FLP-NAYNCVLVASAETND-IDLSFQILKDLLVSSRTLSSDCYT--NFA 75 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~~~~~-------~~~-~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~ 75 (287)
-+....|..+++..++........ .+. ..-..+.-+.+-.|. -+++.+.+..++.... +...... .+.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence 345566666678877766554332 011 112223333333333 2456666666654321 1111122 233
Q ss_pred HHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh--HHHHHHHHHhcCC
Q 023133 76 RAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT--YNIVLDILGRVGR 153 (287)
Q Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~ 153 (287)
..+.-.|+.+....++..+.+.. ..+..-...+.-++.-.|+.+.+..+++.+.... .|.... -.++..+|+..|+
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC
T ss_pred hhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC
Confidence 44556678777777777766532 2333333344444557788888888888887641 222222 1234567788999
Q ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 023133 154 VNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNI-EESLRLFN 232 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 232 (287)
......+++.+.+.. ..++.....+.-++...|+.+.+.+++..+.+.+ .|.+..-..+.-+....|.. .++..++.
T Consensus 576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 888888999988753 2244444444445556777777788887766654 56655555555555555543 67888888
Q ss_pred HHHh
Q 023133 233 DMKQ 236 (287)
Q Consensus 233 ~~~~ 236 (287)
.+..
T Consensus 654 ~L~~ 657 (963)
T 4ady_A 654 PLTK 657 (963)
T ss_dssp HHHT
T ss_pred HHcc
Confidence 8875
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.99 E-value=0.15 Score=40.83 Aligned_cols=73 Identities=11% Similarity=0.040 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCcchHhHHHH
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ-----QQIRPSIYVYRSL 249 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 249 (287)
...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456677788899999998888887653 56777899999999999999999998888754 3888887764433
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.39 E-value=1.7 Score=35.42 Aligned_cols=190 Identities=9% Similarity=0.081 Sum_probs=111.6
Q ss_pred cCChhHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH----HHhc
Q 023133 46 TNDIDLSFQILKDLLVS-----SRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFA----FAKS 116 (287)
Q Consensus 46 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 116 (287)
.|+++.|++.+-.+.+. ...........++..|...++++...+.+.-+.+..... ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888877666543 233345667778888999999998888777665432122 2222333332 2222
Q ss_pred CCHHH--HHHHHHHHhcC--C-CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---hhHHHHHHHHH
Q 023133 117 RQIEK--ALLIFDHIKGL--K-CKPD---LITYNIVLDILGRVGRVNDMLNEFASMKEA--GVVPD---FISYNTLLNNL 183 (287)
Q Consensus 117 ~~~~~--a~~~~~~~~~~--~-~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 183 (287)
...+. -..+.+.+... | +-.. ......|...+...|++.+|..++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32222 22222222111 1 1111 112355777888889999999999888543 22211 24566677888
Q ss_pred HhcCchHHHHHHHHHHhh----CCCcCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 184 RKIRRLDLCLIYFREMGE----SGIKPDL--LTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~----~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
...+++..|..++.++.. ....|+. ..+...+..+...+++.+|.+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888999999888887642 2222322 3456667777778888888877776653
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.15 E-value=0.91 Score=41.98 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=12.4
Q ss_pred HHHHHHHhhcCChhHHHHHHHH
Q 023133 37 NCVLVASAETNDIDLSFQILKD 58 (287)
Q Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~ 58 (287)
..+..++...|++++|.+.|++
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~k 867 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKT 867 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 3445555566666666666544
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.54 E-value=6.2e-05 Score=60.72 Aligned_cols=201 Identities=12% Similarity=0.126 Sum_probs=141.2
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAF 113 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (287)
..|..|..+....+...+|++.|-+. -|+..|..++.++.+.|.+++-..++...++.. .++.+=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHH
Confidence 68999999999999998887765321 256678889999999999999999998887664 3444557899999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------------CCCCh
Q 023133 114 AKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG--------------------VVPDF 173 (287)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~ 173 (287)
++.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+.... -.-++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 99998765444332 4677667778888888888887777765543211 12367
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (287)
.||..+-.+|...+.+.-|.-+--.++-. || -...++..|...|.+++-+.+++..... -+...-+|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHH
Confidence 89999999999999988877665555422 11 1223566688888888888888877632 133444555555444
Q ss_pred Hh
Q 023133 254 KK 255 (287)
Q Consensus 254 ~~ 255 (287)
++
T Consensus 274 sK 275 (624)
T 3lvg_A 274 SK 275 (624)
T ss_dssp HS
T ss_pred Hh
Confidence 44
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.51 E-value=0.79 Score=28.40 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (287)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-.+.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 44466777777777777888888888888888888888888888877744 2233445666554
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.46 E-value=0.72 Score=31.62 Aligned_cols=114 Identities=15% Similarity=0.074 Sum_probs=66.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhc---CC--CCc----hhHHHHHHHHhhcCChhHHHHHHHHHHHhc-CCCCH-HHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDK---NI--FLP----NAYNCVLVASAETNDIDLSFQILKDLLVSS-RTLSS-DCYTN 73 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~---~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~~~ 73 (287)
-+..+...|.++.|+-+.+.+... +. .++ .++..+..++...+++.+|...|++.++.. .-+.. .....
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 356777888999998887764332 22 122 366777888899999999999998875432 11111 11111
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKG 131 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 131 (287)
+. ....... ......+..+---+..+|.+.+++++|+.+++.+..
T Consensus 106 ~~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 0000000 011233445555588888999999999999887754
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.10 E-value=1.4 Score=30.18 Aligned_cols=122 Identities=7% Similarity=-0.078 Sum_probs=70.9
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhc-CCCCH-------HHHHHHHHHHhccCChHHHHHHHHHHHhcC--CCCcH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSS-RTLSS-------DCYTNFARAFIMTDDCTQLLIFIEEVVQIA--SPESI 103 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ 103 (287)
.++..-+..+...+.++.|+-+.+-+.... ..|+. .++..+..++...+++..|...|++.++.. ++.+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666777888888888887777755432 22331 245667788888899999999998875432 11111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023133 104 IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAG 168 (287)
Q Consensus 104 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 168 (287)
.....+. ....... .....++...---+..+|.+.+++++|+.+++.+....
T Consensus 101 s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 101 KVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp -----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred Ccccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 1111110 0000000 01113345555558889999999999999998875443
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.05 E-value=1.2 Score=29.23 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 65 TLSSDCYTNFARAFIMTD---DCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 65 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
.|+..+--.+.-++.+.. +...++.+++.+.+.+.......+--|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344444433444444443 23345555555555442122333444555566666666666666666554
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.85 E-value=4.5 Score=32.99 Aligned_cols=262 Identities=11% Similarity=0.030 Sum_probs=154.1
Q ss_pred cCChhHHHHHHHHHhhc-----CCCCc-hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh----cc
Q 023133 12 AGNVSAAVRLLQSLRDK-----NIFLP-NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI----MT 81 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 81 (287)
.|+++.|++.+-.+.+. +.... .....++..|...++++...+.+.-+....... ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788888887666542 22223 678889999999999999888777665432222 222333443332 23
Q ss_pred CChHHH--HHHHHHHH--hcC-CCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCC---HhhHHHHHHHH
Q 023133 82 DDCTQL--LIFIEEVV--QIA-SPE---SIIVVNRIIFAFAKSRQIEKALLIFDHIKGL--KCKPD---LITYNIVLDIL 148 (287)
Q Consensus 82 ~~~~~a--~~~~~~~~--~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 148 (287)
...+.. ....+.+. ..| +-. .......|...|...|++.+|..++..+... |..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 332221 11111111 111 112 2234567889999999999999999998642 22111 23567778899
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC--hhHHHHHHHHHHhcCchHHHHHHHHHHhhC-CCcCCHHHHHHHH----HH
Q 023133 149 GRVGRVNDMLNEFASMKE----AGVVPD--FISYNTLLNNLRKIRRLDLCLIYFREMGES-GIKPDLLTYTALI----DS 217 (287)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~----~~ 217 (287)
...+++..|..++..... ....|+ ...+...+..+...+++.+|.+.|.++.+. ....|...+..++ .+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999988742 222222 234566777788889999999888877643 1122333332222 22
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhc--CChHHHHHHHHHHhhcCC
Q 023133 218 FGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKM--GKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 218 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~ 274 (287)
..-.+....-..++........-++...+..++.+|... .+++.+.+.|.......+
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 223333333333444333333334567788888888764 456777777765544443
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.75 E-value=1.9 Score=28.39 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLID 251 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 251 (287)
+.-+..+-++.+...++.|++......+.+|.+.+|+..|.++|+-.+.+ ..+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 34456666666677777888888888888888888888888888877754 2333445666554
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.63 E-value=5.9 Score=33.87 Aligned_cols=115 Identities=10% Similarity=-0.076 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHH----HHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHH
Q 023133 153 RVNDMLNEFASMKEAGVVPDFISY----NTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESL 228 (287)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 228 (287)
+.+.|...+....+.... +.... ..+.......+...++...+...... .++.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 778888888887654322 32222 22232333344355666666665443 234333334444445679999999
Q ss_pred HHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHHhh
Q 023133 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 271 (287)
..|+.|..... ....-.--+..++...|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988875321 1233344456677788999999999888754
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.54 E-value=4.7 Score=32.65 Aligned_cols=98 Identities=7% Similarity=-0.116 Sum_probs=62.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCCHhhH--H
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIA--SPESIIVVNRIIFAFAKSRQIEKALLIFDHIKG---LKCKPDLITY--N 142 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~--~ 142 (287)
+...+...+.+.|+++.|.+.+.++...- ...-...+-.++..+...+++..+...+.+... .+..|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55667778888888888888888877542 234456777788888888888888888877643 2222222210 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 023133 143 IVLDILGRVGRVNDMLNEFASMKEA 167 (287)
Q Consensus 143 ~l~~~~~~~~~~~~a~~~~~~~~~~ 167 (287)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112234567788888877776443
No 257
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.39 E-value=1.6 Score=27.03 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH
Q 023133 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215 (287)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 215 (287)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++-++..- .+....|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 455666666777777777777777777777777777777777777776431 22233455554
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.42 E-value=2.7 Score=27.95 Aligned_cols=47 Identities=9% Similarity=-0.019 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 86 QLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
+++.+++.+.+.+........-.|.-++.+.|++++|.+..+.+.+.
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 44445555444332222222333444455555555555555555443
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.35 E-value=3.3 Score=27.27 Aligned_cols=62 Identities=11% Similarity=0.206 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH
Q 023133 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215 (287)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 215 (287)
+.-+..+-++.+...++-|++......+++|-+.+++..|.++++-++.+- .+....|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 455666667777777777888888888888888888888888887776431 23334565555
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.12 E-value=2.7 Score=25.96 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=19.6
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 113 FAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
+...|++++|..+.+.+. .||.+.|-+|-. .+.|--+++...+..+..
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 344444444444443333 344444433322 234444444444434433
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.81 E-value=2.9 Score=25.88 Aligned_cols=17 Identities=12% Similarity=0.090 Sum_probs=7.4
Q ss_pred HHhcCCHHHHHHHHHHH
Q 023133 113 FAKSRQIEKALLIFDHI 129 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~ 129 (287)
+...|++++|..+.+.+
T Consensus 50 LmNrG~Yq~Al~l~~~~ 66 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL 66 (116)
T ss_dssp HHHTTCHHHHHHHHTTS
T ss_pred HHcchhHHHHHHhcCCC
Confidence 34444444444444433
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.41 E-value=7.5 Score=30.21 Aligned_cols=85 Identities=5% Similarity=0.033 Sum_probs=53.4
Q ss_pred HHhhcCChhHHHHH----HHHHHHhcCCCCHHHHHHHHHHHhccCChH-HHHHHHHHHH----hcC--CCCcHHHHHHHH
Q 023133 42 ASAETNDIDLSFQI----LKDLLVSSRTLSSDCYTNFARAFIMTDDCT-QLLIFIEEVV----QIA--SPESIIVVNRII 110 (287)
Q Consensus 42 ~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~ 110 (287)
.+.+.|+...+-++ ++-+.+.+++++......++..+.....-+ .-..++++++ +.| ..-++.....+.
T Consensus 64 ~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig 143 (336)
T 3lpz_A 64 TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVG 143 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHH
Confidence 34455555444433 355566778888888888887777655321 1222333332 223 235677888888
Q ss_pred HHHHhcCCHHHHHHHH
Q 023133 111 FAFAKSRQIEKALLIF 126 (287)
Q Consensus 111 ~~~~~~~~~~~a~~~~ 126 (287)
..|.+.+++.+|+..|
T Consensus 144 ~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 144 TLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHccCCHHHHHHHH
Confidence 9999999999988877
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.95 E-value=4.4 Score=30.29 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=23.6
Q ss_pred hccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 79 IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
.+.|+++++++....-++.. |.|...-..++..++-.|+|+.|.+-++...
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444444444444444443 3444444444444444555555544444443
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.38 E-value=9.8 Score=30.40 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 108 RIIFAFAKSRQIEKALLIFDHIKGLKCKPD-----LITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 108 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
.++..|...|++.+|.+++.++.+.--..| ...+-.-+..|...+++.++...+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 455666666666666666655543110111 123344445556666666666666554
No 265
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.15 E-value=2 Score=35.52 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=32.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCC-CCc----hhHHHHHHHHhhcCChhHHHHHHHHHHH
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNI-FLP----NAYNCVLVASAETNDIDLSFQILKDLLV 61 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 61 (287)
+|.+++.|...+.+++|..+..+..-... .++ .-+..+.+.+.-.+++.+|.+.+.....
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45666666666666666666666532211 111 1222344555566666666666665543
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=85.84 E-value=4.5 Score=24.99 Aligned_cols=50 Identities=6% Similarity=-0.160 Sum_probs=22.9
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK 133 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 133 (287)
+.+.|++++|..+.+.. ..||...|-+|. -.+.|.-+++...+.++...|
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 34445555554443322 235555554443 234455555555554554443
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.28 E-value=4.7 Score=28.63 Aligned_cols=87 Identities=9% Similarity=-0.002 Sum_probs=53.4
Q ss_pred hHHHHHHHHHhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChHHHHHHHH
Q 023133 16 SAAVRLLQSLRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCTQLLIFIE 92 (287)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~ 92 (287)
+.+.+.|.....-.-.+. ..|...+..+ ..+....+.++|..|...|+.-. ...|......+...|++.+|.++|+
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444544333222222 3444444443 12335678888888888776654 4456667777778888888888888
Q ss_pred HHHhcCCCCcH
Q 023133 93 EVVQIASPESI 103 (287)
Q Consensus 93 ~~~~~~~~~~~ 103 (287)
.-++.+-.|-.
T Consensus 140 ~GI~~~A~P~~ 150 (202)
T 3esl_A 140 LGAENNCRPYN 150 (202)
T ss_dssp HHHHTTCBSHH
T ss_pred HHHHcCCccHH
Confidence 88877766643
No 268
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.24 E-value=4.9 Score=24.87 Aligned_cols=50 Identities=4% Similarity=-0.124 Sum_probs=23.5
Q ss_pred HhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 023133 78 FIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLK 133 (287)
Q Consensus 78 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 133 (287)
+.+.|++++|..+.+.. ..||...|-+|. -.+.|.-+++...+.++...|
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLALC--EYRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHHH--HHHHTCHHHHHHHHHHHTTCC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC
Confidence 34455555555544322 235555554443 234455555555555554444
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=85.09 E-value=3 Score=28.14 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHH
Q 023133 50 DLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESII 104 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 104 (287)
+++.++|..|...|+... ...|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 448889999988887655 4456677788888999999999999988887667543
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.49 E-value=3.3 Score=30.76 Aligned_cols=242 Identities=10% Similarity=-0.016 Sum_probs=110.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH---HHHHHHHHHhc
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD---CYTNFARAFIM 80 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 80 (287)
..+...++.|+.+.+..+++.-...+...+..-...+...+..|+.+ +++.+.+.|..++.. -.+ .+...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGAT-PFLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCC-HHHHHHH
Confidence 45666778899887777765432222221111123444455667654 444555556554321 112 2233344
Q ss_pred cCChHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHh------------hHHHHH
Q 023133 81 TDDCTQLLIFIEEVVQIASPESI---IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLI------------TYNIVL 145 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~l~ 145 (287)
.|+.+ +++.+.+.|..++. .-++ .+...+..|+.+-+..+++ .|..++.. .-.+.+
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYK----RGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHH----TTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHH----hCCCcccccccHHHHHhhccCCCcHH
Confidence 56654 44444455543321 1122 2334456677654444443 33333221 011233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHH--HHHHHHHHHh
Q 023133 146 DILGRVGRVNDMLNEFASMKEAGVVPD---FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT--YTALIDSFGR 220 (287)
Q Consensus 146 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~ 220 (287)
...+..|+.+-+..+++. .|..++ ....+.+.. .+..++.....++.+.+.+.|..++... -.+.+...+.
T Consensus 153 ~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 444566776544444332 143332 222333333 3345665555667777777766554321 1123444455
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchHh--HHHHHHHHHhcCChHHHHHHH
Q 023133 221 TGNIEESLRLFNDMKQQQIRPSIYV--YRSLIDNLKKMGKVDLAMTIF 266 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~ 266 (287)
.|+.+-+..+++. .|..++... -.+-+....+.|+.+-+.-++
T Consensus 229 ~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll 273 (285)
T 1wdy_A 229 KKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIAELLC 273 (285)
T ss_dssp TTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence 6776554444431 343333211 112233344566654443333
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=84.42 E-value=4.1 Score=30.24 Aligned_cols=208 Identities=12% Similarity=0.086 Sum_probs=98.2
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHH
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVSSRTLSSD---CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESII--VVNRIIFA 112 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 112 (287)
..+...++.|+.+.+.. +.+.|..++.. .-...+...+..|+.+ +++.+.+.|..++.. .-.+.+..
T Consensus 7 ~~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQ----LLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHHHH----HHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 34555667787765444 44455444321 1112344445567765 444455555443211 11123334
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-------------HH
Q 023133 113 FAKSRQIEKALLIFDHIKGLKCKPDL---ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI-------------SY 176 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~ 176 (287)
.+..|+.+-+..++ +.|..++. ..++. +...+..|+.+ +++.+.+.|..++.. ..
T Consensus 79 A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~ 149 (285)
T 1wdy_A 79 AAIAGSVKLLKLFL----SKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGA 149 (285)
T ss_dssp HHHHTCHHHHHHHH----HTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCC
T ss_pred HHHcCCHHHHHHHH----HcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCC
Confidence 45567765444444 34433332 22223 33445667755 444455555544322 11
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHhhCCCcCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHh--HHHHHH
Q 023133 177 NTLLNNLRKIRRLDLCLIYFREMGESGIKPD---LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYV--YRSLID 251 (287)
Q Consensus 177 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~ 251 (287)
..+...+..|+.+-+..+++.. |..++ ..-.+.+.. ....++.....++++.+.+.|..++... -.+.+.
T Consensus 150 -t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 150 -TALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224 (285)
T ss_dssp -CHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred -cHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 2333445567766555554431 32222 222223333 3345555555667777777776655421 223344
Q ss_pred HHHhcCChHHHHHHHH
Q 023133 252 NLKKMGKVDLAMTIFE 267 (287)
Q Consensus 252 ~~~~~g~~~~a~~~~~ 267 (287)
..+..|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 4556777766555554
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=83.25 E-value=3.7 Score=28.10 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHH
Q 023133 50 DLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIV 105 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 105 (287)
+...++|..|...|+-.. ...|......+...|++..|.++|+.-++.+-.|....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 457789999998887665 44566777888889999999999999998887775543
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.76 E-value=17 Score=29.09 Aligned_cols=226 Identities=9% Similarity=0.014 Sum_probs=129.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCc-----hhHHHHHHHHhhcC-ChhHHHHHHHHHHHhcCCCCHHHH------
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-----NAYNCVLVASAETN-DIDLSFQILKDLLVSSRTLSSDCY------ 71 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~------ 71 (287)
.|...|.+.|+.++..+++.....--...+ .....++..+.... ..+.-.++..+..+..-. ...+|
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~~l~ 102 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 578889999999999999988765432222 24556777776643 344445555554432111 11222
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCC-----CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCCHhhHH--
Q 023133 72 TNFARAFIMTDDCTQLLIFIEEVVQIASP-----ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGL--KCKPDLITYN-- 142 (287)
Q Consensus 72 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~-- 142 (287)
..++..|...|++.+|.+++.++.+.=.. .-..++-.-+..|...+++.++...+...... .+.++.....
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 25788899999999999999888764211 12345666778899999999999999776532 1223332221
Q ss_pred --HHHHHHH-hcCCHHHHHHHHHHHHHc-C-C-CC---ChhHHHHHHHHHHhcCchHHHHHHHH-HH-hhCCCcCCHHHH
Q 023133 143 --IVLDILG-RVGRVNDMLNEFASMKEA-G-V-VP---DFISYNTLLNNLRKIRRLDLCLIYFR-EM-GESGIKPDLLTY 211 (287)
Q Consensus 143 --~l~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~ 211 (287)
.-...+. ..++|..|...|-+..+. . . .| +...|..+.... .++..+...++. .. ... ..|....+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhcccccccc-CCccHHHH
Confidence 1122345 688999999888775421 1 1 11 122343333222 233223323221 11 111 24666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 023133 212 TALIDSFGRTGNIEESLRLFNDM 234 (287)
Q Consensus 212 ~~l~~~~~~~g~~~~a~~~~~~~ 234 (287)
..++.+|. .+++.+...+++..
T Consensus 260 ~~L~~a~~-~~dl~~f~~iL~~~ 281 (394)
T 3txn_A 260 KSVAEASH-KRSLADFQAALKEY 281 (394)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHH-hCCHHHHHHHHHHH
Confidence 66666654 46666666655554
No 274
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=82.53 E-value=5.4 Score=26.05 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHh
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLR 26 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~ 26 (287)
+.++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345666666777777777776664
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=81.83 E-value=10 Score=27.25 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=9.5
Q ss_pred HHHHhcCChhHHHHHHHHHh
Q 023133 7 EKLCKAGNVSAAVRLLQSLR 26 (287)
Q Consensus 7 ~~~~~~g~~~~a~~~~~~~~ 26 (287)
...++.|+.+.+..+++.+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~ 33 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQ 33 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33444555555555554433
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.74 E-value=16 Score=28.12 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH----------------HHHhC--CCCcchHhH-HHHHHHHHhcCChHHHHHHHH
Q 023133 207 DLLTYTALIDSFGRTGNIEESLRLFN----------------DMKQQ--QIRPSIYVY-RSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~a~~~~~----------------~~~~~--~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~ 267 (287)
++.....+...|.+.|++.+|...|- ...+. |.+-+...| ...+-.|.-.|+...|..+|+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 45556666666666666666665431 11111 211111111 222233556788999988888
Q ss_pred HHh
Q 023133 268 EMN 270 (287)
Q Consensus 268 ~~~ 270 (287)
...
T Consensus 213 ~f~ 215 (312)
T 2wpv_A 213 IFL 215 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 277
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=81.44 E-value=20 Score=29.17 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=58.5
Q ss_pred hcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCCh
Q 023133 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN-----IEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKV 259 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (287)
+.++.+.|..++.+|.+.|..|....-..+..+....|. ...|...++....-|.+--.......+--++.+-+-
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 457899999999999999877766666666666666664 445566666666666433222233233333444443
Q ss_pred HHHHHHHHHH---hhcCCCCCChhhHhh
Q 023133 260 DLAMTIFEEM---NSSLSDLAGPKDFKR 284 (287)
Q Consensus 260 ~~a~~~~~~~---~~~~~~~~~~~~~~~ 284 (287)
..+...++.+ .+..+..+.|.|...
T Consensus 347 n~~~~a~~~a~~~~~~~~~~~vp~~l~~ 374 (447)
T 3pvs_A 347 NAVYTAFKAALADARERPDYDVPVHLRN 374 (447)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCCGGGSS
T ss_pred hHHHHHHHHHHHHHHhcCCCCCChHHhC
Confidence 3444444333 334456666666543
No 278
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=80.42 E-value=13 Score=26.31 Aligned_cols=54 Identities=11% Similarity=0.194 Sum_probs=27.7
Q ss_pred hcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCC
Q 023133 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN-----IEESLRLFNDMKQQQI 239 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~ 239 (287)
+..+.+.|+.++.+|++.| .|....-..++.+....|. ...|...++....-|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3456666666666666666 5544444444555544443 2233444444444453
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.81 E-value=14 Score=26.27 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcC
Q 023133 154 VNDMLNEFASMKEAGVVPD-FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKP 206 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 206 (287)
..++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444455555544433222 2233334444444455555555555544444444
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.59 E-value=4.1 Score=27.51 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=14.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHh
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLR 26 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~ 26 (287)
.++.-|...|+.++|.+.++++.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHhC
Confidence 45566666666666666666654
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=78.81 E-value=5.9 Score=28.65 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcH
Q 023133 50 DLSFQILKDLLVSSRTLS-SDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESI 103 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 103 (287)
+...++|..|...|+.-. ...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 577889999998887665 446677778888999999999999999888766743
No 282
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=78.56 E-value=15 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=18.4
Q ss_pred cCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcC
Q 023133 186 IRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTG 222 (287)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 222 (287)
..+.+.|+.++.+|++.|-.|....-..++.+....|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4455556666666655554444444444444444333
No 283
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=76.19 E-value=19 Score=25.77 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=14.4
Q ss_pred CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHH
Q 023133 187 RRLDLCLIYFREMGESGIKPDLLTYTALIDSFG 219 (287)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (287)
.+.+.|..++.+|++.|-.|....-..++.+..
T Consensus 49 SDpDAALywLaRMl~~GEDp~~IaRRLvi~AsE 81 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGEDPNFIFRRLLISACE 81 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 444555555555554444343333333333333
No 284
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=76.15 E-value=2.2 Score=31.52 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=17.2
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 023133 40 LVASAETNDIDLSFQILKDLLVSSRTLS 67 (287)
Q Consensus 40 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 67 (287)
+...++.|+.+....+++.+.+.+..++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 3344566777776666766666665554
No 285
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.81 E-value=45 Score=28.58 Aligned_cols=152 Identities=10% Similarity=-0.072 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHhh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHH
Q 023133 117 RQIEKALLIFDHIKGLKCKPDLIT----YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLC 192 (287)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 192 (287)
.+.+.|...+....+.. ..+... +..+.......+...++...+....... ++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 47788888888775432 223322 2223333344453445566666554432 3333344455556678999999
Q ss_pred HHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCcc----------hH-----h
Q 023133 193 LIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQ------------QIRPS----------IY-----V 245 (287)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~~~----------~~-----~ 245 (287)
...|..|.... .......--+..++...|+.++|..+|..+.+. |.++. .. .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 99999887642 123444445667788889999999988887542 21110 00 0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 246 YRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 246 ~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
...-+..+...|....|...+..+...
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 112344567788888888887777553
No 286
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=72.66 E-value=32 Score=26.79 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcC-ChhHHHHHHHHHHHhcCCC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETN-DIDLSFQILKDLLVSSRTL 66 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~ 66 (287)
+.++.-|...|+.++|...++++......+.-+...+..++-+.. .-+.+..++..+.+.|+-+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 467888999999999999888885332111122222222222211 2345556666666655443
No 287
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=71.12 E-value=8.9 Score=23.49 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=30.5
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHH
Q 023133 21 LLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQL 87 (287)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 87 (287)
+++.+.+.++....-...+-. .......+.|.++++.+...| +..|..++.++...+....|
T Consensus 26 vld~L~~~~vlt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHH
Confidence 556666666553322222211 001135666666666665443 24566666666555554444
No 288
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=70.98 E-value=21 Score=23.93 Aligned_cols=45 Identities=7% Similarity=-0.051 Sum_probs=17.3
Q ss_pred hcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH
Q 023133 27 DKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCY 71 (287)
Q Consensus 27 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 71 (287)
+.|...+..-..++..+...+..-.|.++++.+.+.+...+..|.
T Consensus 20 ~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTV 64 (150)
T 2xig_A 20 KNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSV 64 (150)
T ss_dssp HCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHH
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhH
Confidence 333333333333344443333344444444444444333333333
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=70.23 E-value=31 Score=25.73 Aligned_cols=204 Identities=9% Similarity=-0.000 Sum_probs=92.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHh
Q 023133 39 VLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPES---IIVVNRIIFAFAK 115 (287)
Q Consensus 39 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 115 (287)
.+...+..|+.+-+..+ .+.|..++...-...+...+..|+.+-+. .+.+.|..++ ..-++ .+...+.
T Consensus 34 ~L~~A~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t-~L~~A~~ 104 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNT-ALYYAVD 104 (285)
T ss_dssp HHHHHHHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCc-HHHHHHH
Confidence 34444556776544443 44444433221122344455667665443 3444454332 11122 2334456
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHhcCchHH
Q 023133 116 SRQIEKALLIFDHIKGLKCKPDL---ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI-SYNTLLNNLRKIRRLDL 191 (287)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 191 (287)
.|+.+-+..+++. |..++. ..+.+.+...+..|+.+-+ +.+.+.|..+... .-.+.+...+..|+.+-
T Consensus 105 ~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~ 176 (285)
T 3kea_A 105 SGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDM 176 (285)
T ss_dssp TTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHH
Confidence 6776655555544 323332 2223444555566776543 3444444333211 22333444556777776
Q ss_pred HHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 192 CLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
+..+++.-..... .+..-.+..+...+..|+. ++.+.+.+.|..++..... -...|+.+-+.-+++.-
T Consensus 177 v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~g 244 (285)
T 3kea_A 177 MILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHcC
Confidence 6665554332211 1111111122333345554 4555566667766655421 13355655555555544
No 290
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=70.21 E-value=5.7 Score=21.74 Aligned_cols=31 Identities=6% Similarity=0.071 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhhcCCCCc-hhHHHHHHHH-hhc
Q 023133 16 SAAVRLLQSLRDKNIFLP-NAYNCVLVAS-AET 46 (287)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~-~~~~~l~~~~-~~~ 46 (287)
++|.+.|-+|++...+++ .+|...++.. ++-
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 567777777666554444 7777777766 443
No 291
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=69.70 E-value=21 Score=23.64 Aligned_cols=37 Identities=11% Similarity=-0.051 Sum_probs=16.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 81 TDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 81 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
.+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 34 SMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp CSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3344445555555544443333333333444444444
No 292
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.60 E-value=33 Score=25.72 Aligned_cols=53 Identities=9% Similarity=-0.044 Sum_probs=28.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 148 LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 148 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
..+.|.++++++....-++.... |...-..+++.+|-.|+++.|.+=++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555566666555555554322 444555555556666666666655555544
No 293
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=69.52 E-value=20 Score=23.47 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444433333333333333444433
No 294
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=69.38 E-value=22 Score=23.76 Aligned_cols=34 Identities=9% Similarity=0.202 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444444433333333333334444444
No 295
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=69.22 E-value=31 Score=25.25 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=49.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHh--cCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 023133 38 CVLVASAETNDIDLSFQILKDLLVS--SRTL----SSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIF 111 (287)
Q Consensus 38 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 111 (287)
--+..+....++++|.+++++..+. +.++ ........+..-.....-..+..+.+.+.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3456777788888888888776532 2221 112222333333333444444445555522 344555666667
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 023133 112 AFAKSRQIEKALLIFDHI 129 (287)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~ 129 (287)
.+.+.|+-++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 778888888888877443
No 296
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=68.15 E-value=20 Score=25.70 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=15.5
Q ss_pred HHHHhccCChHHHHHHHHHHHhc
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQI 97 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~ 97 (287)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34566777777777777776654
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=67.64 E-value=43 Score=26.33 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCcchHhHHHH
Q 023133 175 SYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN--IEESLRLFNDMKQQQIRPSIYVYRSL 249 (287)
Q Consensus 175 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 249 (287)
....++.-|...++.++|.+.++++..-...+ ......+..++-+.++ .+...+++..+.+.|+-+.......+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 35777888888999999999998886322222 2334455555555433 45577888888777665544443333
No 298
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=67.50 E-value=30 Score=24.54 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=11.9
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQS 24 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~ 24 (287)
.+...++.|+.+.+..+++.
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHh
Confidence 44555667776666665543
No 299
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=67.14 E-value=19 Score=23.90 Aligned_cols=33 Identities=21% Similarity=0.070 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444433333333333334444433
No 300
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.85 E-value=19 Score=25.58 Aligned_cols=49 Identities=16% Similarity=-0.008 Sum_probs=21.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcchHh--HHHHHHHHHhcCChHHHHHHHH
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIYV--YRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 267 (287)
+...+..|+.+-+..+++ .|..++... -.+-+....+.|+.+-+.-+++
T Consensus 181 L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~ 231 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231 (240)
T ss_dssp HHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 334445666654444433 344443221 1123444456666654444443
No 301
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=66.74 E-value=5.4 Score=21.89 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=19.0
Q ss_pred cCChhHHHHHHHHHhhcCCCCchhH
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNAY 36 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~ 36 (287)
.-+++.|...|.++...|..|+++|
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 4578889999988888877776443
No 302
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=66.24 E-value=43 Score=25.76 Aligned_cols=168 Identities=13% Similarity=0.033 Sum_probs=83.5
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHH----HHHHHHhcCCCCcHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLI----FIEEVVQIASPESIIVVNRI 109 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 109 (287)
..|..+..-|.+.+++++|++++..-.. .+.+.|+...|-. +++-..+.+.+++......+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555666666677777777776654321 2333344443333 34444555666776666666
Q ss_pred HHHHHhcCCHH-HHHHHHHHH----hcCCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 110 IFAFAKSRQIE-KALLIFDHI----KGLKC--KPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 110 ~~~~~~~~~~~-~a~~~~~~~----~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
+..+.....-+ .=.++++++ .+.|- .-|......+...|.+.|++.+|...|-. |-.-|...+..++.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHH
Confidence 66655432111 011222222 22221 12555666777777888888887766531 111134445555444
Q ss_pred HHhc---CchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023133 183 LRKI---RRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMK 235 (287)
Q Consensus 183 ~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 235 (287)
+... |...++--++ ...+-.|.-.|+...|..+++...
T Consensus 175 w~~~~~~~~~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4433 3222221111 112223445677777777777654
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.66 E-value=31 Score=28.67 Aligned_cols=70 Identities=9% Similarity=0.002 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCcch--HhHH-HHHHHHHhcCChHHHHHHHHHHhhcCCCCCC
Q 023133 209 LTYTALIDSFGRTGNIEESLRLFNDMKQQ-QIRPSI--YVYR-SLIDNLKKMGKVDLAMTIFEEMNSSLSDLAG 278 (287)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~--~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (287)
..+|.++..|...+.++.|.++..+..-- .-.++. ..|. .+...+.-.+++.+|.+.+..+....|....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 45777778888888888888888776411 001111 1222 2334556677888888888887766665443
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=65.44 E-value=4.4 Score=29.82 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=18.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCc
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLP 33 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~ 33 (287)
+...++.|+.+....+++.+.+.+....
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 4455677888877777776666554433
No 305
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=64.98 E-value=47 Score=25.83 Aligned_cols=134 Identities=7% Similarity=-0.031 Sum_probs=74.0
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHH----HHHHHHhcCCCCcHHHHHHH
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLI----FIEEVVQIASPESIIVVNRI 109 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l 109 (287)
..|.++..-|.+.+++++|++++..-.. .+.+.|+...+-. +++-..+.+.++|......+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566777778888889988887655321 2333344433333 33445566677777777777
Q ss_pred HHHHHhcCCHH-HHHHHHHHHh----cCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 110 IFAFAKSRQIE-KALLIFDHIK----GLK--CKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 110 ~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
+..+.....-+ .=..+.+++. +.| ..-|......+...|.+.+++.+|...|- .|-.++...|..++.-
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHH
Confidence 77666554311 1122222222 112 12245556677888888888888877662 1333333555444444
Q ss_pred HHhc
Q 023133 183 LRKI 186 (287)
Q Consensus 183 ~~~~ 186 (287)
+...
T Consensus 177 w~~~ 180 (336)
T 3lpz_A 177 WYKQ 180 (336)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 4333
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=62.96 E-value=32 Score=23.17 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcc
Q 023133 191 LCLIYFREMGESGIKPD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPS 242 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 242 (287)
...++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 36777777776655433 33566666667777777777777777777665663
No 307
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=62.85 E-value=35 Score=23.59 Aligned_cols=63 Identities=6% Similarity=0.004 Sum_probs=26.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHh---hHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC
Q 023133 110 IFAFAKSRQIEKALLIFDHIKGLKCKPDLI---TYNIVLDILG-RVGRVNDMLNEFASMKEAGVVPD 172 (287)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 172 (287)
+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++. ...+.....++.+.+.+.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 333444455544445555555555444322 1222222211 12233344455555556555544
No 308
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=62.21 E-value=37 Score=23.61 Aligned_cols=60 Identities=13% Similarity=0.191 Sum_probs=33.2
Q ss_pred hHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCc
Q 023133 140 TYNIVLDI-LGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIK 205 (287)
Q Consensus 140 ~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 205 (287)
-|..|+.. +.-+|.+.+++-++..+-. .+..-|.. -+|-+..+...|...++.+.+..+.
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~lNT----~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHKLNT----CTSKYYES--LCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHTCCB----HHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHhcch----HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444432 3457777777765543210 11222222 2456678888888888888755443
No 309
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=61.91 E-value=10 Score=21.27 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhc
Q 023133 36 YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIM 80 (287)
Q Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 80 (287)
++.++...++..-.++++-.+.+..+.| ..+...|..-.+.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4444445555444555555555555554 3344444444444443
No 310
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=61.82 E-value=54 Score=25.47 Aligned_cols=20 Identities=5% Similarity=0.116 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 023133 213 ALIDSFGRTGNIEESLRLFN 232 (287)
Q Consensus 213 ~l~~~~~~~g~~~~a~~~~~ 232 (287)
.++..+.+....+.+.++|.
T Consensus 146 ~vl~~l~~~~g~~~l~~~~~ 165 (339)
T 1ug3_A 146 EILGLLCKSMGPKKVGTLWR 165 (339)
T ss_dssp HHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHH
Confidence 34444444444555555554
No 311
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=61.10 E-value=21 Score=24.70 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=9.0
Q ss_pred HHHhcCChhHHHHHHH
Q 023133 8 KLCKAGNVSAAVRLLQ 23 (287)
Q Consensus 8 ~~~~~g~~~~a~~~~~ 23 (287)
..+..|+.+.+..++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3345666666665554
No 312
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=60.98 E-value=42 Score=23.87 Aligned_cols=181 Identities=8% Similarity=-0.024 Sum_probs=90.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhh--HHHHHHHHH
Q 023133 74 FARAFIMTDDCTQLLIFIEEVVQIASPESII--VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLIT--YNIVLDILG 149 (287)
Q Consensus 74 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 149 (287)
.+...+..|+.+.+..+++.+.+.+..++.. .-.+.+...+..|+.+-+.. +.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL----LVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHH----HHHcCCCccccCCCCCCHHHHHH
Confidence 3445567788888888888776666544322 12234455566777754444 444554443321 123344455
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHH---HHHHHHHHHhcCC
Q 023133 150 RVGRVNDMLNEFASMKEAGVVP---DFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLT---YTALIDSFGRTGN 223 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~ 223 (287)
..|+.+-+..+++.....++.+ +....+.+. ..+..|+.+-+..+ .+.|..++... -...+...+..|+
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~L----l~~g~~~~~~~~~~g~t~L~~A~~~~~ 162 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQETVQLL----LERGADIDAVDIKSGRSPLIHAVENNS 162 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHHHHHHH----HHcCCCcccccccCCCcHHHHHHHcCC
Confidence 7788776665555543221122 222233333 33455665544443 44444433211 1223444456677
Q ss_pred HHHHHHHHHHHHhCCCCcchHh--HHHHHHHHHhcCChHHHHHHHH
Q 023133 224 IEESLRLFNDMKQQQIRPSIYV--YRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 224 ~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 267 (287)
.+- ++.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 163 ~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 163 LSM----VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHH----HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHH----HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 654 444445565554321 1234444566777765555544
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.88 E-value=33 Score=22.69 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=33.5
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 355566665433 233444444455555677777777666545556665555555555553
No 314
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=60.30 E-value=18 Score=26.14 Aligned_cols=52 Identities=15% Similarity=0.284 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhCCCcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 023133 190 DLCLIYFREMGESGIKPD-LLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRP 241 (287)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 241 (287)
+...++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 456677777776655443 3356666677777778888888777777666555
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=59.66 E-value=38 Score=22.99 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=28.6
Q ss_pred HHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCC
Q 023133 60 LVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQI--ASPESIIVVNRIIFAFAKSRQ 118 (287)
Q Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 118 (287)
.+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3445555432 233444455555555666666666555 434444443344455555553
No 316
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=59.22 E-value=23 Score=26.58 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhh
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRD 27 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~ 27 (287)
|.|++.|...|++..|.+++++++.
T Consensus 38 n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 38 NAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 6788888889999999999887654
No 317
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=59.02 E-value=42 Score=23.30 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=46.8
Q ss_pred hccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--C--------------CHh-hH
Q 023133 79 IMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCK--P--------------DLI-TY 141 (287)
Q Consensus 79 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--------------~~~-~~ 141 (287)
.-.|.+..++-++... + ..+..-|..| +|-+..++..|...++.+.+..+. | |.. .+
T Consensus 44 yyngEY~R~Lf~L~~l---N-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy 117 (242)
T 3kae_A 44 YLNGEYTRALFHLHKL---N-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE 117 (242)
T ss_dssp HHTTCHHHHHHHHHTC---C-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred hhcchHhHHHHHHHhc---c-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence 3456666655544321 1 1222233332 466778888888888777743332 2 222 34
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 142 NIVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 142 ~~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
+.+...+.+.|+.++|+..+..--.
T Consensus 118 ~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 118 SLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 5666677788888888887765433
No 318
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=58.90 E-value=37 Score=22.63 Aligned_cols=60 Identities=7% Similarity=0.024 Sum_probs=32.6
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
.+.+.|.+++. --..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-
T Consensus 17 ~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 35556665433 2334455555555566677777777665545566665555566655554
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=58.67 E-value=16 Score=24.13 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=12.2
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCCHHH
Q 023133 40 LVASAETNDIDLSFQILKDLLVSSRTLSSDC 70 (287)
Q Consensus 40 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 70 (287)
+..+...+..-.|.++++.+.+.+...+..|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aT 50 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTT 50 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHH
Confidence 3333333333344444444444333333333
No 320
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.50 E-value=65 Score=25.33 Aligned_cols=66 Identities=9% Similarity=0.148 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCc--hHHHHHHHHHHhhCCCcC
Q 023133 140 TYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRR--LDLCLIYFREMGESGIKP 206 (287)
Q Consensus 140 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 206 (287)
..+.++.-|...++.++|...++++...... .......+..+.-+.++ .+...+++..+...|+-+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3578889999999999999999998642222 12334444445444332 345677777777666443
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=58.40 E-value=35 Score=22.23 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=34.3
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcC-chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 164 MKEAGVVPDFISYNTLLNNLRKIR-RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 556666655432 33455555554 566677777777766555666665555666665554
No 322
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.18 E-value=92 Score=26.94 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhh
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAE 45 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 45 (287)
++|-.|.|+|.+++|.++.++....--..+..+...+..++.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 467889999999999999987754322111345555666653
No 323
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=57.76 E-value=34 Score=22.65 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=32.4
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
.+.+.|.+++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3455666654432 23344444444 55677777777666555566665555555555553
No 324
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.74 E-value=29 Score=23.88 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=7.9
Q ss_pred HHHHHHHHhCCCCcc
Q 023133 228 LRLFNDMKQQQIRPS 242 (287)
Q Consensus 228 ~~~~~~~~~~~~~~~ 242 (287)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555444
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=57.58 E-value=39 Score=22.51 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=33.3
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcC-chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIR-RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
.+.+.|.+++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3555666654432 23444444444 455677777777666555566665555566665554
No 326
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=57.09 E-value=65 Score=24.87 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=43.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCCh
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDC 84 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 84 (287)
.+...+..|+.+-+..+++.-...+... ..-...+...+..|+.+- .+.+++.|..++...-...+...+..|+.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACKFGCVDT----AKYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHCCHHH----HHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHH----HHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 4555667788777666665421111111 111223444455666543 34444445444331111233344566777
Q ss_pred HHHHHHHHHHHhcCC
Q 023133 85 TQLLIFIEEVVQIAS 99 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~ 99 (287)
+-+..+++.....|.
T Consensus 98 ~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 98 DLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccccCC
Confidence 766666666444443
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=56.90 E-value=30 Score=26.57 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=11.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHH
Q 023133 37 NCVLVASAETNDIDLSFQILKDL 59 (287)
Q Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~~ 59 (287)
..++.-|...|+.++|.+.++++
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 34444455555555555555554
No 328
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=56.62 E-value=28 Score=24.71 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=12.9
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQSL 25 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~ 25 (287)
.+...++.|+.+....+++.-
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC
T ss_pred hHHHHHHhCCHHHHHHHHHhc
Confidence 455556667777666666553
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=56.09 E-value=44 Score=22.65 Aligned_cols=44 Identities=14% Similarity=0.121 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcC--CCCCCHhhHHHHHHHHHhcC
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGL--KCKPDLITYNIVLDILGRVG 152 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 152 (287)
++..+...+..-.|.++++.+.+. +...+..|...-+..+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444455555555443 32334444333444444444
No 330
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=54.80 E-value=77 Score=24.99 Aligned_cols=63 Identities=10% Similarity=0.053 Sum_probs=32.7
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH--HHHHHHHHHHhcCC
Q 023133 70 CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI--EKALLIFDHIKGLK 133 (287)
Q Consensus 70 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~ 133 (287)
....++.-|...++.++|.+.++++.... .-.......++......++. +.+-.++..+...+
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~-~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~ 78 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPK-HFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEG 78 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCC
Confidence 34567777788888888888877764211 01122333333333333322 33445555555544
No 331
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=54.41 E-value=39 Score=21.61 Aligned_cols=41 Identities=5% Similarity=-0.079 Sum_probs=20.2
Q ss_pred HHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 196 FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
|+.+....+.|+...--.-+......++++.|.++...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444333222223334456677777776666654
No 332
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=53.84 E-value=92 Score=25.60 Aligned_cols=119 Identities=12% Similarity=0.107 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHh
Q 023133 141 YNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGR 220 (287)
Q Consensus 141 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 220 (287)
|..-...+...|++++|.++-...... +--+..|.+.+-..-...|+..-...+|..+.+.| +.+..----++..-..
T Consensus 364 ~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~ 441 (494)
T 1bpo_A 364 FARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQ 441 (494)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHh
Confidence 444445555666666666555444332 22244555444444444455555666666665554 3444333334444445
Q ss_pred cCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHHHH
Q 023133 221 TGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 269 (287)
.|+.+-..+++.+ ..+..+...-. ++ +..+...|+.+|.+.
T Consensus 442 q~r~~llekWl~e---~KL~~SEeLGD-lv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 442 QGRKQLLEKWLKE---DKLECSEELGD-LV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp TTCHHHHHHHHHH---TCSCCCHHHHH-HH----HHHCSHHHHHHHHHH
T ss_pred ccHHHHHHHHHhc---CCccccHHhHh-hh----hhcCHHHHHHHHHHc
Confidence 5555544444432 22333333222 22 333556666666665
No 333
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=52.36 E-value=32 Score=19.88 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 85 TQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
-.+.++++.+.+.+...+..+....+..+.+.|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444333333333333344444333
No 334
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=51.91 E-value=86 Score=24.71 Aligned_cols=64 Identities=16% Similarity=0.267 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcC-ChhHHHHHHHHHHHhcCCC
Q 023133 3 NGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETN-DIDLSFQILKDLLVSSRTL 66 (287)
Q Consensus 3 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~ 66 (287)
..+|.-|...|+.++|...++++.......+ ..+..+..++-+.. .-+.+-.++..+...++-+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls 81 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIAT 81 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCC
Confidence 4688899999999999999999864321111 23333333332221 1234455566666555433
No 335
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.40 E-value=68 Score=23.41 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=40.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcC--CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 023133 109 IIFAFAKSRQIEKALLIFDHIKGL--KCKP----DLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNN 182 (287)
Q Consensus 109 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 182 (287)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 456666777777777777665431 1111 0111111222222222222222333333 22 2344445555566
Q ss_pred HHhcCchHHHHHHHHHHh
Q 023133 183 LRKIRRLDLCLIYFREMG 200 (287)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~ 200 (287)
+.+.|+.++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666666666666665544
No 336
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.23 E-value=55 Score=22.28 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCc--chHhHHHHHH-H-----HHhcCChHHHHHHHHHHhh
Q 023133 220 RTGNIEESLRLFNDMKQQQIRP--SIYVYRSLID-N-----LKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~~~~ 271 (287)
+.|++-+|-++++..-...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777776543344 4455666665 2 2346777777777777644
No 337
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=48.18 E-value=39 Score=24.04 Aligned_cols=54 Identities=7% Similarity=-0.012 Sum_probs=28.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCcchH--hHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQQQIRPSIY--VYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
+....+.|+.+-+ +.+.+.|..++.. .-.+-+......|+...+.++.+.+.++
T Consensus 181 L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 181 LHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334456665433 3444455444322 1122334445677777888888777654
No 338
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=48.15 E-value=63 Score=22.07 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcch
Q 023133 192 CLIYFREMGESGIKPDL-LTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSI 243 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 243 (287)
..++|..|...|+--.. ..|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 55566666655544332 34555556666667777777777766666555543
No 339
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.09 E-value=60 Score=21.79 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 023133 106 VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR--VNDMLNEFASMKEAGVV 170 (287)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 170 (287)
.+.++.-|...|+.++|.+.++++..-.+ ....+...+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45566777777777777777777752100 011223333444444222 34556666666665543
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=47.98 E-value=70 Score=22.55 Aligned_cols=57 Identities=5% Similarity=-0.057 Sum_probs=31.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCc---------chHhHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQQQIRP---------SIYVYRSLIDNLKKMGKVDLAMTIFEEMNSS 272 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 272 (287)
+...+..|+.+-+..+++.+.+.|..+ |..-.+ -+...++.|+.+-+.-+++.-...
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCccc
Confidence 344456677777767777777665433 222222 334445667776666666655443
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.74 E-value=35 Score=22.05 Aligned_cols=44 Identities=5% Similarity=0.041 Sum_probs=21.4
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 39 VLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 39 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444555555555555544444444444445554444
No 342
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=47.12 E-value=32 Score=18.33 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCcchHhHHHHHHHHHhcCC--hHHHHHHHHHH
Q 023133 229 RLFNDMKQQQIRPSIYVYRSLIDNLKKMGK--VDLAMTIFEEM 269 (287)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~ 269 (287)
+.++.+.+.|+.+. ....++...|. ++.|++++.+|
T Consensus 11 qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 34455555555543 22334445555 77777777776
No 343
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=46.88 E-value=73 Score=22.41 Aligned_cols=19 Identities=11% Similarity=0.029 Sum_probs=12.5
Q ss_pred HHHHhhcCChhHHHHHHHH
Q 023133 40 LVASAETNDIDLSFQILKD 58 (287)
Q Consensus 40 ~~~~~~~~~~~~a~~~~~~ 58 (287)
+...++.|+.+....++..
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4455667887777666654
No 344
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=46.30 E-value=42 Score=21.69 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=23.8
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444455566666666655444555555555555555543
No 345
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.07 E-value=77 Score=22.49 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=8.1
Q ss_pred CChHHHHHHHHHHHhcC
Q 023133 82 DDCTQLLIFIEEVVQIA 98 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (287)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 346
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.73 E-value=41 Score=23.78 Aligned_cols=209 Identities=13% Similarity=-0.000 Sum_probs=89.6
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH---HHHHHHHHhccC
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDC---YTNFARAFIMTD 82 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~ 82 (287)
+...++.|+.+.+..+++.-...+... ..-...+...+..|+.+-+ +.+.+.|..++... -...+...+..|
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPD-KENVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCC-CCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence 344567888777766665322111111 1222344555667776544 44444444332111 112233344556
Q ss_pred ChHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---HhhHHHHHHHHHhcCCHHH
Q 023133 83 DCTQLLIFIEEVVQIASPESI---IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD---LITYNIVLDILGRVGRVND 156 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 156 (287)
+.+ +++.+.+.|..++. .-. ..+...+..|+.+-+..++ +.|..++ ....+.+..+... ++...
T Consensus 88 ~~~----~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll----~~~~~~~~~~~~g~t~l~~a~~~-~~~~~ 157 (240)
T 3eu9_A 88 HLS----MVVQLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLI----AKGQDVDMMDQNGMTPLMWAAYR-THSVD 157 (240)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHH-CCSST
T ss_pred CHH----HHHHHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHH----hcCCCccccCCCCCcHHHHHHHh-CChHH
Confidence 655 34444455543321 111 2334445667765444443 3343332 2222334333333 33222
Q ss_pred HHHHHHHHHHcCCCCChhH---HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHH--HHHHHHHHhcCCHHHHHHHH
Q 023133 157 MLNEFASMKEAGVVPDFIS---YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTY--TALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~ 231 (287)
.. +.+.+.|..++... -.+.+...+..|+.+-+..+++. |..++.... ..-+....+.|+.+-+..++
T Consensus 158 ~~---~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 158 PT---RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA----GANVDAQNIKGESALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp TH---HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH----TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred HH---HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 22 33444444433221 11234445566776655444443 433332110 12344445667776655555
Q ss_pred HHHHh
Q 023133 232 NDMKQ 236 (287)
Q Consensus 232 ~~~~~ 236 (287)
+...+
T Consensus 231 ~~~~~ 235 (240)
T 3eu9_A 231 EARQA 235 (240)
T ss_dssp HHC--
T ss_pred Hhhhc
Confidence 54433
No 347
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=44.64 E-value=40 Score=22.10 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 178 TLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 178 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
.++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444555566666666655545555555555555555543
No 348
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=43.85 E-value=1.3e+02 Score=24.46 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCch-----HHHHHHHHHHhhCCC
Q 023133 150 RVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRL-----DLCLIYFREMGESGI 204 (287)
Q Consensus 150 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~ 204 (287)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|.. ..|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 4578999999999999998877665555555555555532 245555555555663
No 349
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=43.78 E-value=39 Score=18.42 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHHH
Q 023133 152 GRVNDMLNEFASM 164 (287)
Q Consensus 152 ~~~~~a~~~~~~~ 164 (287)
|+.+.|+..+-.|
T Consensus 37 gdvd~aI~~LL~m 49 (59)
T 1wgl_A 37 GNKDAAINSLLQM 49 (59)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 3333333333333
No 350
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.33 E-value=1.1e+02 Score=23.30 Aligned_cols=158 Identities=11% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH--HHHHHHhccCC
Q 023133 6 IEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYT--NFARAFIMTDD 83 (287)
Q Consensus 6 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ 83 (287)
+...++.|+.+-+..++++....--..+..-...+......+.......+.+.+++.|..++..... ..+...+..|.
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~ 251 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhh
Q ss_pred hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 84 CTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFAS 163 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 163 (287)
.+.+..+++.--..--..|..-.+.|..+..... .++.+.+.+.|..++..+ .+...++.|+.+ +.+.
T Consensus 252 ~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~ 319 (337)
T 4g8k_A 252 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL-----KKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKV 319 (337)
T ss_dssp HHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHH
T ss_pred hHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHH
Q ss_pred HHHcCCCCChhH
Q 023133 164 MKEAGVVPDFIS 175 (287)
Q Consensus 164 ~~~~~~~~~~~~ 175 (287)
+.+.|-.||...
T Consensus 320 Ll~~GA~~d~~~ 331 (337)
T 4g8k_A 320 LLSHGAKEDFHP 331 (337)
T ss_dssp HHHTTCCC----
T ss_pred HHHCcCCCCCCC
No 351
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=43.31 E-value=39 Score=19.92 Aligned_cols=35 Identities=6% Similarity=-0.014 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCCh
Q 023133 15 VSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETNDI 49 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 49 (287)
.++|...|..|+....+++ .+|...+...+.-.++
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY 51 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRY 51 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGG
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCcc
Confidence 4677777777766544444 7777777665554443
No 352
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=42.52 E-value=37 Score=19.38 Aligned_cols=35 Identities=6% Similarity=0.048 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHhhcCCCCc-hhHHHHHHHHhhcCC
Q 023133 14 NVSAAVRLLQSLRDKNIFLP-NAYNCVLVASAETND 48 (287)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 48 (287)
..++|...|..|+....+++ .+|...+.....-.+
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPR 48 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCcc
Confidence 34667777777665544444 677766665554433
No 353
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=42.34 E-value=79 Score=21.52 Aligned_cols=52 Identities=8% Similarity=-0.073 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHHHhcCCCCC--CHhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 023133 115 KSRQIEKALLIFDHIKGLKCKP--DLITYNIVLD-I-----LGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 166 (287)
..|++-+|.++++.+-...-.+ +...|..||. . ..+.|++..|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777775543234 3445555655 2 2356777777777777643
No 354
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.12 E-value=95 Score=22.38 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHhcCCCCcHH--H-----HHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 023133 84 CTQLLIFIEEVVQIASPESII--V-----VNRIIFAFAKSRQIEKALLIFDHIKGL 132 (287)
Q Consensus 84 ~~~a~~~~~~~~~~~~~~~~~--~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 132 (287)
++.|+.+|+.+.+....++.. . --..+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777776554211111 0 112234567777777777777777653
No 355
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.00 E-value=71 Score=20.64 Aligned_cols=64 Identities=13% Similarity=0.251 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCC
Q 023133 106 VNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGR--VNDMLNEFASMKEAGVV 170 (287)
Q Consensus 106 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 170 (287)
.+.++.-|...|+.++|.+.++++....+ ....+...+..++-+.+. .+.+..++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 44566777777778888777777752110 011223334444444332 35566666666665544
No 356
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=40.85 E-value=66 Score=22.58 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 267 (287)
+.....++.+.+... +-+-.-.-.+|.++.+.|++++|.+++.++... +..... ..+.+++.-|.-++.
T Consensus 14 ~l~~~~~~~~~LR~q--rHdf~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~ 82 (192)
T 1ixm_A 14 DTALTNELIHLLGHS--RHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLT 82 (192)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHH
Confidence 344455555555433 223333445788888999999999998887753 111222 455677666665555
Q ss_pred HH
Q 023133 268 EM 269 (287)
Q Consensus 268 ~~ 269 (287)
+.
T Consensus 83 K~ 84 (192)
T 1ixm_A 83 FN 84 (192)
T ss_dssp GG
T ss_pred HH
Confidence 54
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.72 E-value=2.1e+02 Score=26.03 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=47.7
Q ss_pred HHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------------
Q 023133 179 LLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIR------------------ 240 (287)
Q Consensus 179 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------ 240 (287)
++..+...|..+-+.++...+. .+...--.+..+|...|++++|...|++.-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 4455555565554444332221 1222222455566666666666666665431 110
Q ss_pred -----cchHhHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 023133 241 -----PSIYVYRSLIDNLKKMGKVDLAMTIFEEMNSSL 273 (287)
Q Consensus 241 -----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 273 (287)
....-|..++..+-+.+.++-+.++-+.+.+..
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~ 927 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 927 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 011246777777777777777777777776543
No 358
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=39.76 E-value=2.6e+02 Score=26.73 Aligned_cols=36 Identities=0% Similarity=-0.035 Sum_probs=23.1
Q ss_pred ccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 023133 80 MTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSR 117 (287)
Q Consensus 80 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 117 (287)
..+++..|++++.++.+.. ++...|..++..+...|
T Consensus 1296 ~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC
Confidence 4567777777777776653 55666666666655544
No 359
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.47 E-value=80 Score=22.38 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHhhcCCCCchhH-----HHHHHHHhhcCChhHHHHHHHHHHH
Q 023133 15 VSAAVRLLQSLRDKNIFLPNAY-----NCVLVASAETNDIDLSFQILKDLLV 61 (287)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~ 61 (287)
++.|+.+|+.+.+.....-..- ...+..|.+.|.+++|.+++++...
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhc
Confidence 4567777777665544322222 2334578889999999999988644
No 360
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=39.04 E-value=51 Score=18.42 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023133 143 IVLDILGRVGRVNDMLNEFASMKEAG 168 (287)
Q Consensus 143 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 168 (287)
.++..++...-.++++-.+.+..+.|
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g 32 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRG 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33333443333444444444444443
No 361
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=38.96 E-value=61 Score=19.62 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=8.7
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 023133 249 LIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 249 li~~~~~~g~~~~a~~~~~ 267 (287)
....+.+.|++++|++..+
T Consensus 21 rAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 3444445555555444333
No 362
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=38.85 E-value=2.7e+02 Score=26.64 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=21.1
Q ss_pred hcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCC
Q 023133 185 KIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGN 223 (287)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (287)
..+++..|.+++.++.+. +|+...|..++..+...|-
T Consensus 1296 ~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~w 1332 (1354)
T 3lxu_X 1296 AHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALGH 1332 (1354)
T ss_dssp HHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCC
Confidence 456666666666666554 3555566655555555443
No 363
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.80 E-value=63 Score=20.63 Aligned_cols=40 Identities=10% Similarity=-0.115 Sum_probs=18.4
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh
Q 023133 162 ASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE 201 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 201 (287)
+.+.+..+.|++..--.-+..+...++++.|..+...+..
T Consensus 50 dkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 50 EQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333434443333322233334455666666666655543
No 364
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=37.75 E-value=58 Score=22.22 Aligned_cols=24 Identities=8% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 023133 107 NRIIFAFAKSRQIEKALLIFDHIK 130 (287)
Q Consensus 107 ~~l~~~~~~~~~~~~a~~~~~~~~ 130 (287)
..++.-|...++.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 345555666666666666666654
No 365
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.22 E-value=1e+02 Score=21.37 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 023133 102 SIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLN 181 (287)
Q Consensus 102 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 181 (287)
+..+-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.+..+ +...+..+.+ .++...-...+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 4444444445555555432 2233333332 345545455555555555532 3333333332 245555555566
Q ss_pred HHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 182 NLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
++.+.+..+ +...+..+.+ .++...-...+.++.+.+. .++...+..+.+
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 666665543 3444444443 3455555555666666665 344555555543
No 366
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=37.12 E-value=45 Score=23.59 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=14.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 023133 215 IDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 215 ~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
+..|.+.|.+++|.++|++...
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHccchHHHHHHHHHHhc
Confidence 3456677777777777776554
No 367
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.85 E-value=1.5e+02 Score=23.00 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHhhCCCcCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHHH
Q 023133 188 RLDLCLIYFREMGESGIKPDLL--TYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMTI 265 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 265 (287)
+.....++-.-+....+.|... +...-+....+.+++..|..+-+++++.+-.++ ..++|.++
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~---------------~a~qArki 249 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP---------------RAEQARKI 249 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH---------------HHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH---------------HHHHHHHH
Confidence 3345556555566665555433 445567778888999999999999988653221 34456666
Q ss_pred HHHHhhc
Q 023133 266 FEEMNSS 272 (287)
Q Consensus 266 ~~~~~~~ 272 (287)
+....+.
T Consensus 250 l~~ce~~ 256 (325)
T 3mv2_A 250 KNKADSM 256 (325)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 6666544
No 368
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=36.67 E-value=83 Score=20.64 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=6.7
Q ss_pred HHhcCCHHHHHHHH
Q 023133 113 FAKSRQIEKALLIF 126 (287)
Q Consensus 113 ~~~~~~~~~a~~~~ 126 (287)
.++.|+.+.+..++
T Consensus 15 A~~~g~~~~v~~ll 28 (165)
T 3twr_A 15 AAKAGDVETVKKLC 28 (165)
T ss_dssp HHHHTCHHHHHHHC
T ss_pred HHHhCCHHHHHHHH
Confidence 34445555444444
No 369
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=36.66 E-value=76 Score=26.75 Aligned_cols=87 Identities=9% Similarity=-0.023 Sum_probs=42.8
Q ss_pred hHHHHHHHHhh--cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 023133 35 AYNCVLVASAE--TNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFA 112 (287)
Q Consensus 35 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (287)
.|..-+..+.. ..+.........+++.+=.--+..-...++..|.+.|-.+.|.++++.+-..-. .+...+ ..+..
T Consensus 481 LW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-eAL~~ 558 (570)
T 3f3f_C 481 LWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-ESIAN 558 (570)
T ss_dssp THHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred chhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-HHHHH
Confidence 56555555543 344556667777777653333556677788999999999999999988765543 233345 45567
Q ss_pred HHhcCCHHHHH
Q 023133 113 FAKSRQIEKAL 123 (287)
Q Consensus 113 ~~~~~~~~~a~ 123 (287)
|+++|+++.+.
T Consensus 559 f~rA~~~~~Vk 569 (570)
T 3f3f_C 559 FSRAGKYELVK 569 (570)
T ss_dssp -----------
T ss_pred HHHcCChhhcc
Confidence 88888887653
No 370
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=36.31 E-value=1.3e+02 Score=22.26 Aligned_cols=203 Identities=12% Similarity=0.011 Sum_probs=96.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH---HHHHHHHHHhcc
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSD---CYTNFARAFIMT 81 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 81 (287)
.+...+..|+.+-+..+++.-...+.. .- ...+...+..|+.+-+ +.+.+.|..++.. -.+ .+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g-~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t-~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLL--EN-EFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNT-ALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCC--TT-CCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCC--CC-CCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCc-HHHHHHHc
Confidence 345556678877666666542221111 11 2234445566776544 4444556554422 122 23334456
Q ss_pred CChHHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHhhHHHHHHHHHhcCCHHHH
Q 023133 82 DDCTQLLIFIEEVVQIASPESI---IVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKP-DLITYNIVLDILGRVGRVNDM 157 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 157 (287)
|+.+-+..+++ .|..++. .-+.+.+...+..|+.+-+.. +.+.|..+ +...-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 77664444443 3433321 111234445556677654444 44444222 221233445556678888776
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023133 158 LNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFND 233 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 233 (287)
.-+++.-...... +..-.+..+...+..|+. ++.+.+.+.|..++..... -...|+.+-+.-+++.
T Consensus 178 ~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~-----a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 178 ILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLE-----NVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGG-----GGTTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChh-----hhhcCCHHHHHHHHHc
Confidence 6666554333221 222222223333445554 4555566777777665421 1335665554444444
No 371
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=36.25 E-value=48 Score=19.84 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHH
Q 023133 18 AVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLL 88 (287)
Q Consensus 18 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 88 (287)
...+++.+.+.++....-+..+-. .....++|..+++.+... ....|..++.++...+....|.
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~---~~t~~~kar~Lld~l~~k----G~~af~~F~~aL~~~~~~~La~ 87 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRN---EPTQQQRAAMLIKMILKK----DNDSYVSFYNALLHEGYKDLAA 87 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHT---SSSHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHc---CCChHHHHHHHHHHHHHc----CHHHHHHHHHHHHHcCHHHHHH
Confidence 456888888888876544433333 356788888888887644 3567888888887777654443
No 372
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=35.84 E-value=73 Score=19.28 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=29.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH-----HhcCChHHHHHHHHHHhh
Q 023133 220 RTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL-----KKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 220 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~a~~~~~~~~~ 271 (287)
+.|++-+|-++++..-...-.|....|..+|... .+.|+. |..++.+...
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4477777777777776543234445565565532 245666 7777766643
No 373
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.40 E-value=2.6e+02 Score=25.48 Aligned_cols=49 Identities=14% Similarity=-0.027 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCH----HHHHHHHHHHHhcC
Q 023133 174 ISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDL----LTYTALIDSFGRTG 222 (287)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 222 (287)
.-|..++..+-+.+.++.+.++-+..++.--..|. ..|+.+..+.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36778888888889988888888877754212222 25666666665443
No 374
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.21 E-value=44 Score=24.50 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=12.1
Q ss_pred HHhhcCChhHHHHHHHHHHHhc
Q 023133 42 ASAETNDIDLSFQILKDLLVSS 63 (287)
Q Consensus 42 ~~~~~~~~~~a~~~~~~~~~~~ 63 (287)
..++.|+.+.+..+++.....+
T Consensus 19 ~A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 19 DAVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHhhcc
Confidence 3445566666666665554443
No 375
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=35.20 E-value=1.2e+02 Score=21.50 Aligned_cols=17 Identities=6% Similarity=0.137 Sum_probs=9.3
Q ss_pred CChHHHHHHHHHHHhcC
Q 023133 82 DDCTQLLIFIEEVVQIA 98 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (287)
.+.+.|+-++-+|++.|
T Consensus 21 SDpDAAly~LaRMl~~G 37 (201)
T 3bge_A 21 SAPDAALYWYARILTAG 37 (201)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 45555555555555555
No 376
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=34.64 E-value=1.7e+02 Score=23.16 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=24.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQIL 56 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 56 (287)
.+...+..|+.+-+..+++.-...+... ......+...+..|+.+-+.-++
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll 67 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAKYLL 67 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSS-SCCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHH
Confidence 3455567788776666665422111111 11223344455667655443333
No 377
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=34.24 E-value=54 Score=21.31 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=13.0
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQS 24 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~ 24 (287)
.+...++.|+.+.+..+++.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHh
Confidence 34455667777777777766
No 378
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=34.17 E-value=71 Score=19.13 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 023133 225 EESLRLFNDMKQ 236 (287)
Q Consensus 225 ~~a~~~~~~~~~ 236 (287)
+.|+.++++++.
T Consensus 11 ~~A~~YvnkVK~ 22 (89)
T 1g1e_B 11 NHAINYVNKIKN 22 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 379
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.04 E-value=2e+02 Score=23.73 Aligned_cols=64 Identities=8% Similarity=0.072 Sum_probs=26.1
Q ss_pred hhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHhcC
Q 023133 34 NAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIA 98 (287)
Q Consensus 34 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 98 (287)
..|..-...+...|++++|-++--.-. .|+--+..|.+.+-..-...|...-.+.+|..+.+.|
T Consensus 362 ~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 362 ELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 344444444455555555544433322 1233334444333332223334444444444444443
No 380
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=33.73 E-value=58 Score=25.29 Aligned_cols=43 Identities=9% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 196 FREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
+..+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|
T Consensus 232 ~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 232 HRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 3334445666666666666666666666677777777766554
No 381
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=33.06 E-value=59 Score=25.18 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=19.2
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhC
Q 023133 163 SMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGES 202 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 202 (287)
.+.+.|+.|...++..++..+.+.=.++.+.++|+.+...
T Consensus 218 hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 218 HFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 3344445554444444444444444445555555555443
No 382
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=33.06 E-value=2.2e+02 Score=24.11 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHH
Q 023133 152 GRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEES 227 (287)
Q Consensus 152 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 227 (287)
...+.......++..+=.--+..-...++..|.+.|-.+.|.++++.+-..-+. +...| .-+..|.++|+++.+
T Consensus 495 ~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 495 GTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred cchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 344555556666554422224556667778888888888888888777654322 33344 455667777777654
No 383
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=33.02 E-value=1.1e+02 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=14.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHh
Q 023133 4 GYIEKLCKAGNVSAAVRLLQSLR 26 (287)
Q Consensus 4 ~li~~~~~~g~~~~a~~~~~~~~ 26 (287)
.+|.-|...|+.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 45566666666666666666654
No 384
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=32.83 E-value=23 Score=25.07 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=12.6
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 023133 5 YIEKLCKAGNVSAAVRLLQSL 25 (287)
Q Consensus 5 li~~~~~~g~~~~a~~~~~~~ 25 (287)
.+...++.|+.+.+..+++.-
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 344555667766666666554
No 385
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=31.81 E-value=1.5e+02 Score=24.20 Aligned_cols=61 Identities=8% Similarity=0.067 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHhhcCCCCc-h---------hHHHHHHHHhhcCChhHHHHHHHHHHHh
Q 023133 2 CNGYIEKLCKAGNVSAAVRLLQSLRDKNIFLP-N---------AYNCVLVASAETNDIDLSFQILKDLLVS 62 (287)
Q Consensus 2 y~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 62 (287)
.|.|...|.+.|+...+..++..+...+..|+ . -..-+.+.+...+++.+|.+.+.+....
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 36677888888888888888888877665333 2 1233455566777777777777666543
No 386
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=29.35 E-value=1.1e+02 Score=19.35 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=10.2
Q ss_pred HHHHHHHhhcCCCCCChhhHhh
Q 023133 263 MTIFEEMNSSLSDLAGPKDFKR 284 (287)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~ 284 (287)
..++.++....|.......|.+
T Consensus 93 ~~yL~~L~~~~ps~ani~~Ya~ 114 (119)
T 1b79_A 93 FAYLAELSKNTPSAANISAYAD 114 (119)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHH
Confidence 3444444444444444444443
No 387
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.17 E-value=1.4e+02 Score=20.59 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=90.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHH
Q 023133 101 ESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLL 180 (287)
Q Consensus 101 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 180 (287)
++..+-...+..+.+.+.. .+...+..+.. .++...-...+.++.+.+..+ +...+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444555555555553 33333333333 345555555666666666543 3344444433 35666667777
Q ss_pred HHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChH
Q 023133 181 NNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVD 260 (287)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (287)
.++.+.++.+ +...+..+.+ .++...-...+.++.+.|+. ++...+..+.+ .++..+-...+.++.+.+. .
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 7788777754 4444545553 45666666777777777774 35555555554 3566777777788888776 4
Q ss_pred HHHHHHHHHhhc
Q 023133 261 LAMTIFEEMNSS 272 (287)
Q Consensus 261 ~a~~~~~~~~~~ 272 (287)
++...+.++.+.
T Consensus 174 ~~~~~L~~~l~d 185 (211)
T 3ltm_A 174 RVRAAMEKLAET 185 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC
Confidence 666666666543
No 388
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.83 E-value=1e+02 Score=21.27 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCch
Q 023133 139 ITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRL 189 (287)
Q Consensus 139 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 189 (287)
..++.++..++...-.++++-.+.+....|. .+..+|.--++.+++..-+
T Consensus 112 ~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~ 161 (174)
T 2p22_A 112 DGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFL 161 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777777777777765 3666666666665554433
No 389
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=28.50 E-value=91 Score=20.06 Aligned_cols=51 Identities=8% Similarity=-0.007 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHH
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLR 229 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 229 (287)
|.-.|...+.+++.+-|.++++-.++.| +...|.+.+..|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3444555555666666666666666554 44555555555555544444433
No 390
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.38 E-value=91 Score=22.43 Aligned_cols=52 Identities=4% Similarity=-0.132 Sum_probs=25.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCh-------hHHHHHHHHHHhc---CchHHHHHHHHHH
Q 023133 147 ILGRVGRVNDMLNEFASMKEAGVVPDF-------ISYNTLLNNLRKI---RRLDLCLIYFREM 199 (287)
Q Consensus 147 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~ 199 (287)
..+..|+.+....+++.+.+.|..++. .-.+.|..+ +.. |+.+-+..+++.-
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcC
Confidence 344556666555566655555544332 223333333 233 6665555555443
No 391
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=28.12 E-value=77 Score=17.12 Aligned_cols=11 Identities=18% Similarity=0.332 Sum_probs=1.9
Q ss_pred HhccCChHHHH
Q 023133 78 FIMTDDCTQLL 88 (287)
Q Consensus 78 ~~~~~~~~~a~ 88 (287)
+...|++++|+
T Consensus 50 LmNrG~Yq~Al 60 (61)
T 3ph0_C 50 LMNQGDYQRAL 60 (61)
T ss_dssp HHHC-------
T ss_pred HHccchHhHhh
Confidence 34555555543
No 392
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.05 E-value=1e+02 Score=21.32 Aligned_cols=50 Identities=18% Similarity=0.091 Sum_probs=35.8
Q ss_pred CChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhc
Q 023133 171 PDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALIDSFGRT 221 (287)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (287)
|....++.++..++.-.-.+.++.++.+....| ..+..+|-.-+..+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g-~I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRG-TIPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 344566777887777777888888888888777 56777777666666654
No 393
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.74 E-value=1.8e+02 Score=23.82 Aligned_cols=61 Identities=20% Similarity=0.276 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhhCCCcCC--------HHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 023133 176 YNTLLNNLRKIRRLDLCLIYFREMGESGIKPD--------LLTYT-ALIDSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 176 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~ 236 (287)
.+.++..|.+.++...+..+++.+...+..|+ ..+|. .+...+...+++.+|.+.+....+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 46667778888888888888877776554332 12333 233445567777777777766654
No 394
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=27.54 E-value=98 Score=21.70 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 023133 143 IVLDILGRVGRVNDMLNEFASMKE 166 (287)
Q Consensus 143 ~l~~~~~~~~~~~~a~~~~~~~~~ 166 (287)
.+|.++.+.|++++|.+++.++..
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~ 60 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVI 60 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666666666666666666543
No 395
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.30 E-value=1.7e+02 Score=20.93 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.8
Q ss_pred CChHHHHHHHHHHHhcCC
Q 023133 82 DDCTQLLIFIEEVVQIAS 99 (287)
Q Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (287)
.+.+.|+-++-+|++.|-
T Consensus 49 SDpDAALywLaRMl~~GE 66 (213)
T 3ctd_A 49 SDPDATLYWLANMVEAGE 66 (213)
T ss_dssp TCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 455555555555555553
No 396
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=27.24 E-value=2.1e+02 Score=21.90 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHhhHHH
Q 023133 66 LSSDCYTNFARAFIMTDDCTQLLIFIEEVVQIASPESII--VVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPDLITYNI 143 (287)
Q Consensus 66 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (287)
.|..-.+.|. ..+..|+.+.+..++ +.|..++.. .-.+.+...+..|+.+-+..+++. |..++...-.+
T Consensus 16 ~d~~g~t~L~-~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t 86 (364)
T 3ljn_A 16 SDDENMEKIH-VAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV----GEVHSLWHGQK 86 (364)
T ss_dssp CCHHHHHHHH-HHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHH----CCCCCCBTTBC
T ss_pred cCCCCCCHHH-HHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHC----CCCccccCCCC
Confidence 3444455444 445567766554444 445443321 112344455667777665555544 22233211122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--------------------hHHHHHHHHHHhcC--chHHHHHHHHHHhh
Q 023133 144 VLDILGRVGRVNDMLNEFASMKEAGVVPDF--------------------ISYNTLLNNLRKIR--RLDLCLIYFREMGE 201 (287)
Q Consensus 144 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 201 (287)
.+...+..|+.+-+..+++.....|..|+. .-.+.|.. .+..| +.+-+..+++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~~~v~~Ll~---- 161 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHW-CVGLGPEYLEMIKILVQ---- 161 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHH-HHHSCGGGHHHHHHHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHH-HHHcCCchHHHHHHHHH----
Confidence 344455778888777777776666665543 12333333 34455 5544444433
Q ss_pred CCCcCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCcc---hHhHHHHHHHHHhcCChHHHHHHHH
Q 023133 202 SGIKPDLL---TYTALIDSFGRTGNIEESLRLFNDMKQ-QQIRPS---IYVYRSLIDNLKKMGKVDLAMTIFE 267 (287)
Q Consensus 202 ~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~ 267 (287)
.|..++.. -.+.| ...+..|+.+-+..+++.-.. .+..++ ..-.+ .+...+..|..+-+.-+++
T Consensus 162 ~ga~~~~~d~~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~ 232 (364)
T 3ljn_A 162 LGASPTAKDKADETPL-MRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS-HLHWAILINWEDVAMRFVE 232 (364)
T ss_dssp HTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC-TTHHHHTTTCHHHHHHHHT
T ss_pred cCCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHhcccccccccccccCCCCCc-HHHHHHHcCCHHHHHHHHH
Confidence 34444322 23333 334456776655544443222 111122 23334 3444556777654444443
No 397
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=26.93 E-value=2e+02 Score=24.50 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=23.2
Q ss_pred HhhcCCCCc--hhHHHHHHHHhhcCChhHHHHHHHH
Q 023133 25 LRDKNIFLP--NAYNCVLVASAETNDIDLSFQILKD 58 (287)
Q Consensus 25 ~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~ 58 (287)
+.+.++++. .+|...++-|...|......+++++
T Consensus 18 l~e~~~~~~d~~~f~~~~~~~l~~g~~~~l~eilqD 53 (596)
T 4f52_E 18 LEEQDFKEEDFGLFQLAGQRCIEEGHTDQLLEIIQN 53 (596)
T ss_dssp CC---------CHHHHHHHHHHSSSCSHHHHHHHTT
T ss_pred hhccCCChhHHHHHHHHHHHHcCcccHHHHHHHHhC
Confidence 555566544 7899999999999999998888866
No 398
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.76 E-value=2.2e+02 Score=21.97 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCcCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 023133 192 CLIYFREMGESGIKPDLL--TYTALIDSFGRTGNIEESLRLFNDMKQQQ 238 (287)
Q Consensus 192 a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 238 (287)
..++-.-+....+.|... +...-+....+.+++..|..+-+++++.+
T Consensus 180 ~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~ 228 (320)
T 3mkr_B 180 ICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELG 228 (320)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 344444455555555433 34455677788889998888888888864
No 399
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=26.12 E-value=96 Score=19.81 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHH
Q 023133 191 LCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNL 253 (287)
Q Consensus 191 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (287)
...+.+.++.+.|.+.|..|. ...+.+.|..++ ..+.++....-..+...|..++.-.
T Consensus 47 ~If~ai~~L~~~~~piD~vtl---~~~L~~~~~l~~--~yL~~L~~~ps~ani~~Ya~iV~e~ 104 (123)
T 3gxv_A 47 LFFEIALKLHEEDCPIDENFI---RQKMPKDKQIKE--EDLVAIFAASPIDNIEAYVEEIKNA 104 (123)
T ss_dssp HHHHHHHHHHHTTCCCSHHHH---HHTSCSSSCCCH--HHHHHHHTSCCCSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHH---HHHHHhCCchhH--HHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344444455566666676653 333444555555 5555544311122445555555433
No 400
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=25.87 E-value=55 Score=20.92 Aligned_cols=30 Identities=13% Similarity=-0.044 Sum_probs=11.8
Q ss_pred ChHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Q 023133 83 DCTQLLIFIEEVVQIASP-ESIIVVNRIIFA 112 (287)
Q Consensus 83 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 112 (287)
.+++|.+.+..+++.-+. ..+..||..+..
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~ 72 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKA 72 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 334444444444332211 234445544443
No 401
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.81 E-value=78 Score=20.37 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHH
Q 023133 211 YTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264 (287)
Q Consensus 211 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (287)
|.-.|...+.+++.+-|.++++-.++.| +...|.+.+-.|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3345666677888888888888888766 66677777777766655555544
No 402
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=25.40 E-value=81 Score=16.48 Aligned_cols=20 Identities=10% Similarity=0.213 Sum_probs=12.2
Q ss_pred ChhHHHHHHHHHhhcCCCCc
Q 023133 14 NVSAAVRLLQSLRDKNIFLP 33 (287)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~ 33 (287)
++..|+++++.+...|-.|+
T Consensus 8 Dv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHHcCCCCc
Confidence 45566666666666665554
No 403
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.16 E-value=1.7e+02 Score=20.02 Aligned_cols=152 Identities=11% Similarity=0.017 Sum_probs=80.7
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh---HHHHHHHHHHh-cC
Q 023133 113 FAKSRQIEKALLIFDHIKGLKCKPD-LITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFI---SYNTLLNNLRK-IR 187 (287)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~~ 187 (287)
.++.|+++....++..-.. ..+ ..- .+.+...+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~---~~~~~~g-~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYE---DKESVLK-SNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSS---CHHHHHT-TTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhcCcc---cccccCC-CCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 4567888876666654211 111 112 234555667788877778888888888777643 22333333222 23
Q ss_pred chHHHHHHHHHHhhCCCcCCHHH---HHHHHHHHHhcCCH-HHHHHHHHHHHh-CCCCcchHhH--HHHHHHHHhcCChH
Q 023133 188 RLDLCLIYFREMGESGIKPDLLT---YTALIDSFGRTGNI-EESLRLFNDMKQ-QQIRPSIYVY--RSLIDNLKKMGKVD 260 (287)
Q Consensus 188 ~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~-~~a~~~~~~~~~-~~~~~~~~~~--~~li~~~~~~g~~~ 260 (287)
+.....++.+.+.+.|..++... .++.+......+.. ..-..+++.+.+ .|..++.... .+-+....+.|..
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~- 167 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP- 167 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH-
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH-
Confidence 34455677777788887665432 11222222233332 345567777777 7766654221 1233333455655
Q ss_pred HHHHHHHHH
Q 023133 261 LAMTIFEEM 269 (287)
Q Consensus 261 ~a~~~~~~~ 269 (287)
++.+++...
T Consensus 168 ~~v~~L~~~ 176 (186)
T 3t8k_A 168 IALKMMEDY 176 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555444
No 404
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=24.76 E-value=1.4e+02 Score=18.87 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhh-CCCcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 023133 153 RVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGE-SGIKPDLLTYTALIDSFGRTGNIEESLRLF 231 (287)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 231 (287)
.+.+|+.-+++..+. .+|......++..+.. -++.++++.....+ .|+ .+.++.-.+....+.|-.+.. +.+
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 466777777777554 3455555555554432 23455555554443 344 334555566666666655444 344
Q ss_pred HHHH
Q 023133 232 NDMK 235 (287)
Q Consensus 232 ~~~~ 235 (287)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 405
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=24.66 E-value=3.9e+02 Score=24.18 Aligned_cols=166 Identities=10% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHhh---cCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 023133 3 NGYIEKLCKAGN---VSAAVRLLQSLRD---KNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFAR 76 (287)
Q Consensus 3 ~~li~~~~~~g~---~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 76 (287)
..++...|+.|. .+.|.+.|+.... ....++..-..+...-.+.|..++-..+++.+.. ..+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~---~~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ---AQLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH---CCSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc---cCCHHHHHHHHH
Q ss_pred HHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH---HhcCCCCCCHhhHHHHHHHHHhcCC
Q 023133 77 AFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDH---IKGLKCKPDLITYNIVLDILGRVGR 153 (287)
Q Consensus 77 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (287)
+++...+.....++++.......-........+..........+.|.+.+.+ .....+......+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 023133 154 VNDMLNEFASMKEAGVVP 171 (287)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~ 171 (287)
-++-.+-++...+.....
T Consensus 847 t~~~~~~~~~f~~~~~~~ 864 (909)
T 4fke_A 847 SEFELQQLEQFKKNNMDV 864 (909)
T ss_dssp SHHHHHHHHHHHTTCSSS
T ss_pred CHHHHHHHHHHHhhCCcc
No 406
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=24.64 E-value=1.6e+02 Score=19.64 Aligned_cols=42 Identities=12% Similarity=0.214 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHH
Q 023133 155 NDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFRE 198 (287)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 198 (287)
+.+..+|+.+-..+ ....+|.-++..+.+....-.....|..
T Consensus 140 ~~~~~~f~~~D~d~--dG~i~~~Ef~~~~~~~~~~~~~l~~~d~ 181 (183)
T 1s6c_A 140 QHVDVFFQKMDKNK--DGIVTLDEFLESXQEDDNIMRSLQLFQN 181 (183)
T ss_dssp HHHHHHHHHHCTTC--SSEECHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC--CCcEeHHHHHHHHhcChHHHHHHHHhhc
Confidence 45555565553322 1345666666666655555555555554
No 407
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=24.64 E-value=1.7e+02 Score=19.96 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=43.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHHHHHHHH
Q 023133 136 PDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLLTYTALI 215 (287)
Q Consensus 136 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 215 (287)
++...-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.++.+ +...+..+.. .++...-...+
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~ 159 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAA 159 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44444445555555555532 2233333332 235444455555555555433 3333444433 24545555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 023133 216 DSFGRTGNIEESLRLFNDMKQ 236 (287)
Q Consensus 216 ~~~~~~g~~~~a~~~~~~~~~ 236 (287)
.++...|+ .++...+..+.+
T Consensus 160 ~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 160 DALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh
Confidence 66666555 334444444443
No 408
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=24.36 E-value=1.6e+02 Score=19.40 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=10.9
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 023133 251 DNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~ 271 (287)
...+..|..+-+.-+++...+
T Consensus 140 ~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 140 DLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHH
Confidence 334455666555555555433
No 409
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=23.96 E-value=51 Score=17.82 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=14.7
Q ss_pred cCChhHHHHHHHHHhhcCCCCchhH
Q 023133 12 AGNVSAAVRLLQSLRDKNIFLPNAY 36 (287)
Q Consensus 12 ~g~~~~a~~~~~~~~~~~~~~~~~~ 36 (287)
.-+++.|...|.+. .+..|+++|
T Consensus 32 ~Wd~~~A~~~F~~~--~~~IP~eAF 54 (57)
T 2jp7_A 32 NWNYEVAIKGFQSS--MNGIPREAF 54 (57)
T ss_dssp TTCSHHHHHHHHHS--TTTSCHHHH
T ss_pred CCCHHHHHHHHHHH--HcCCCHHHh
Confidence 34778888888886 444554443
No 410
>1dvk_A PRP18; PRE-mRNA splicing factor, X-RAY crystallography, RNA binding protein; 2.15A {Saccharomyces cerevisiae} SCOP: a.72.1.1
Probab=23.34 E-value=1.9e+02 Score=19.95 Aligned_cols=40 Identities=13% Similarity=0.327 Sum_probs=15.6
Q ss_pred HHHHHHhCCCCcchHhHHHHHHHHHhc-CChHHHHHHHHHH
Q 023133 230 LFNDMKQQQIRPSIYVYRSLIDNLKKM-GKVDLAMTIFEEM 269 (287)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~ 269 (287)
+|..+.+..++.|...--.-|--++.. +++-+|-+.|-+|
T Consensus 68 L~~~Lr~~~L~~dil~~L~~Iv~~~q~~r~y~~And~Yl~L 108 (173)
T 1dvk_A 68 LLLQLRRNQLAPDLLISLATVLYHLQQPKEINLAVQSYMKL 108 (173)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHTSGGGHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444443333333322222233333 4444444444443
No 411
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.31 E-value=2.3e+02 Score=21.06 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=32.3
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcc-CChHHHHHHHHHH
Q 023133 36 YNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMT-DDCTQLLIFIEEV 94 (287)
Q Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 94 (287)
.-.++...-+.+++++..+.++.+.+.+...+..--|.|-.+|-.. |....+.+++..+
T Consensus 34 lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 34 LVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 3344555566677777777777666666666666555555444321 3334444444433
No 412
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=22.60 E-value=1.4e+02 Score=18.14 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 023133 21 LLQSLRDKNIFLPNAYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFI 79 (287)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (287)
+++.+.+.++....-+..+-. ..-..+++..+++.+...| ..+|..++.++.
T Consensus 26 lld~L~~~~VLt~~~~e~I~~---~~t~~~k~~~Lld~L~~rG----~~Af~~F~~aL~ 77 (100)
T 3crd_A 26 VLQYLYQEGILTENHIQEINA---QTTGLRKTMLLLDILPSRG----PKAFDTFLDSLQ 77 (100)
T ss_dssp SHHHHHHHTSSCHHHHHHHTT---CSSSHHHHHHHHHHTTTSC----SSCHHHHHHHCT
T ss_pred HHHHHHHCCCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHC----HHHHHHHHHHHH
Confidence 445555555554322222221 3445566666666655443 234555555554
No 413
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=22.06 E-value=1.7e+02 Score=19.05 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=10.9
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 023133 251 DNLKKMGKVDLAMTIFEEMNS 271 (287)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~ 271 (287)
......|+.+-+.-+++...+
T Consensus 140 ~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 140 DLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 334455666555555555443
No 414
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=22.04 E-value=1.1e+02 Score=17.89 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=20.5
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 023133 133 KCKPDLITYNIVLDILGRVGRVNDMLNEFASM 164 (287)
Q Consensus 133 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 164 (287)
+++|++.||+-+...+-+.--..++..+.+++
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34777888887777666555555555555544
No 415
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.92 E-value=1.3e+02 Score=17.64 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=8.6
Q ss_pred HhcCCHHHHHHHHHHHH
Q 023133 219 GRTGNIEESLRLFNDMK 235 (287)
Q Consensus 219 ~~~g~~~~a~~~~~~~~ 235 (287)
-+.|++++|+.++.+..
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34455555555554443
No 416
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.74 E-value=1.7e+02 Score=20.34 Aligned_cols=173 Identities=9% Similarity=0.009 Sum_probs=81.0
Q ss_pred HHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------HhhHHHHHHHH
Q 023133 75 ARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD------LITYNIVLDIL 148 (287)
Q Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~ 148 (287)
+...+..|+.+.+..+++.-.......+..-.+ .+...+..|+.+-+..+++ .|..++ ...++.+ ...
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~L-~~A 79 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLLS----KMENVNLDDYPDDSGWTPF-HIA 79 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----TCTTCCGGGCCCTTSCCHH-HHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHHHHHHHHh----ccccccccccCCCCCCCHH-HHH
Confidence 344566788776666665432221112222223 3344556677665444444 331222 2223333 344
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCC---hhHHHHHHHHHHhcCchHHHHHHHHHHhhCCCcCCHH---HHHHHHHHHHh
Q 023133 149 GRVGRVNDMLNEFASMKEAG--VVPD---FISYNTLLNNLRKIRRLDLCLIYFREMGESGIKPDLL---TYTALIDSFGR 220 (287)
Q Consensus 149 ~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 220 (287)
+..|+.+ +++.+.+.| ..++ ....+.+. ..+..|+.+-+..++ +.|..++.. -.+ .+...+.
T Consensus 80 ~~~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~-~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t-~L~~A~~ 149 (228)
T 2dzn_A 80 CSVGNLE----VVKSLYDRPLKPDLNKITNQGVTCLH-LAVGKKWFEVSQFLI----ENGASVRIKDKFNQI-PLHRAAS 149 (228)
T ss_dssp HHHCCHH----HHHHHHSSSSCCCTTCCCTTCCCHHH-HHHHTTCHHHHHHHH----HTTCCSCCCCTTSCC-HHHHHHH
T ss_pred HHcCCHH----HHHHHHhCCCCcccccCCcCCCCHHH-HHHHcCCHhHHHHHH----HcCCCccccCCCCCC-HHHHHHH
Confidence 5566655 444555555 2222 22233333 344567665444443 445444322 222 2344456
Q ss_pred cCCHHHHHHHHHHHHhCC-CCcc---hHhHHHHHHHHHhcCChHHHHHHHHH
Q 023133 221 TGNIEESLRLFNDMKQQQ-IRPS---IYVYRSLIDNLKKMGKVDLAMTIFEE 268 (287)
Q Consensus 221 ~g~~~~a~~~~~~~~~~~-~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 268 (287)
.|+.+ +++.+.+.| ..++ ..-. +.+...+..|+.+-+..++++
T Consensus 150 ~~~~~----~v~~Ll~~g~~~~~~~d~~g~-t~L~~A~~~~~~~~v~~Ll~~ 196 (228)
T 2dzn_A 150 VGSLK----LIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAAVLLVEK 196 (228)
T ss_dssp TTCHH----HHHHHHTTTCCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHH----HHHHHHhcCcccccCcCCCCC-CHHHHHHHcCCHHHHHHHHHh
Confidence 67764 444445555 3332 2222 234445677887766666633
No 417
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.66 E-value=2.8e+02 Score=21.38 Aligned_cols=78 Identities=6% Similarity=-0.018 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HhhH--HHHHHH----HHhcCCHHHHHHHH
Q 023133 89 IFIEEVVQIASPESIIVVNRIIFAFAKSRQIEKALLIFDHIKGLKCKPD-LITY--NIVLDI----LGRVGRVNDMLNEF 161 (287)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--~~l~~~----~~~~~~~~~a~~~~ 161 (287)
++++.+.+.|+.|...++.-++..+.+.=.++.+..+++.+...|.... ...+ -+++.. .....++++...++
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L 309 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFL 309 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 3566667778888888888888888888889999999999987764322 2222 222222 23357888888887
Q ss_pred HHHHH
Q 023133 162 ASMKE 166 (287)
Q Consensus 162 ~~~~~ 166 (287)
+.+..
T Consensus 310 ~~~p~ 314 (345)
T 2qfz_A 310 QNLPT 314 (345)
T ss_dssp TSCSC
T ss_pred HcCCC
Confidence 76544
No 418
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=21.57 E-value=1e+02 Score=17.93 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=10.5
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 023133 249 LIDNLKKMGKVDLAMTIFEEM 269 (287)
Q Consensus 249 li~~~~~~g~~~~a~~~~~~~ 269 (287)
+.+-|+..|+++.|..+|+.+
T Consensus 18 ~ARe~Al~GnYdta~~yY~g~ 38 (78)
T 2rpa_A 18 LAREYALLGNYDSAMVYYQGV 38 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHH
Confidence 334445555555555555444
No 419
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.08 E-value=1.5e+02 Score=18.14 Aligned_cols=31 Identities=6% Similarity=0.061 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhccC
Q 023133 52 SFQILKDLLVSSRTLSSDCYTNFARAFIMTD 82 (287)
Q Consensus 52 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (287)
+.++.+++..-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555666666666666665555444
No 420
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.07 E-value=1.4e+02 Score=23.01 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=63.8
Q ss_pred ChhHHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHhccCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCH
Q 023133 48 DIDLSFQILKDLLVSS-----RTLSSD---CYTNFARAFIMTDDCTQLLIFIEEVVQIASPESIIVVNRIIFAFAKSRQI 119 (287)
Q Consensus 48 ~~~~a~~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 119 (287)
+-++|.-++..+...- ..++.. .+...+..+.+..++ ++++.+.+.|+.|...++.-++..+.+.=.+
T Consensus 169 ~E~~aF~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P----~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~ 244 (334)
T 2qq8_A 169 DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLP----KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPL 244 (334)
T ss_dssp CHHHHHHHHHHHHTSHHHHHHHSSCCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCH
T ss_pred CHHHHHHHHHHHHHhhhHHhccCCChHHHHHHHHHHHHHHHHHCH----HHHHHHHHcCCCccchHHHHHHHHhcccCCH
Confidence 3456777776664321 223322 222233333333333 3566677788888888888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCCHhhH--HHHHHHH---HhcCCHHHHHHHHHHH
Q 023133 120 EKALLIFDHIKGLKCKPDLITY--NIVLDIL---GRVGRVNDMLNEFASM 164 (287)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~---~~~~~~~~a~~~~~~~ 164 (287)
+.+..+++.+...|. ....+ -+++..+ .-..+.++...++..+
T Consensus 245 ~~~lriWD~~l~eg~--~~l~~valaiL~~~~~~Ll~~d~~~il~~L~~l 292 (334)
T 2qq8_A 245 DLACRIWDVFCRDGE--EFLFRTALGILKLFEDILTKMDFIHMAQFLTRL 292 (334)
T ss_dssp HHHHHHHHHHHHHCH--HHHHHHHHHHHHHTHHHHHTCCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence 999999998876652 22222 1222211 1234677777666554
No 421
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=21.04 E-value=1.3e+02 Score=18.97 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 023133 245 VYRSLIDNLKKMGKVDLAMTIFEEMNSSLS 274 (287)
Q Consensus 245 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 274 (287)
++..|+.++.+.+.-.-|.++-+.+.+..+
T Consensus 74 tv~~L~~aLr~~~l~~~ae~Ie~~l~~~~~ 103 (112)
T 1ich_A 74 TLELLGRVLRDMDLLGCLEDIEEALCGPAA 103 (112)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHhccHHHHHHHHHHHhcccc
Confidence 455555555555555555555555444444
No 422
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.99 E-value=2.5e+02 Score=20.48 Aligned_cols=218 Identities=9% Similarity=-0.029 Sum_probs=116.5
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCC----hHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 023133 35 AYNCVLVASAETNDIDLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDD----CTQLLIFIEEVVQIASPESIIVVNRII 110 (287)
Q Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~ 110 (287)
.-...+.++.+.+. ..+...+..+.. .++...-...+.++...+. ......++...... .++..+-...+
T Consensus 39 vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr~~a~ 112 (280)
T 1oyz_A 39 KRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVRATAI 112 (280)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHHHHHH
T ss_pred HHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 33445555555554 334555555543 3455544555556655553 22233333322222 34555556666
Q ss_pred HHHHhcCC-----HHHHHHHHHHHhcCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 023133 111 FAFAKSRQ-----IEKALLIFDHIKGLKCKPDLITYNIVLDILGRVGRVNDMLNEFASMKEAGVVPDFISYNTLLNNLRK 185 (287)
Q Consensus 111 ~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 185 (287)
.++...+. ...+...+..+.. .++...-...+.++...|..+ +...+..+... ++...-...+.++..
T Consensus 113 ~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~d---~~~~vr~~a~~aL~~ 185 (280)
T 1oyz_A 113 ESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLKD---PNGDVRNWAAFAINI 185 (280)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHTC---SSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHcC---CCHHHHHHHHHHHHh
Confidence 66666542 3455566555544 466666666677777776633 44455455442 455555555566655
Q ss_pred cC-chHHHHHHHHHHhhCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCcchHhHHHHHHHHHhcCChHHHHH
Q 023133 186 IR-RLDLCLIYFREMGESGIKPDLLTYTALIDSFGRTGNIEESLRLFNDMKQQQIRPSIYVYRSLIDNLKKMGKVDLAMT 264 (287)
Q Consensus 186 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 264 (287)
.+ ....+...+..+.+ .++...-...+.++.+.|+.. +...+..+.+. ++ +-...+.++.+.|. ..+..
T Consensus 186 ~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~-~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~ 255 (280)
T 1oyz_A 186 NKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKR-VLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLP 255 (280)
T ss_dssp HTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGG-GHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHH
T ss_pred hccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHh-hHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhH
Confidence 54 23456666665554 356666667777888888654 44444444432 33 33455677777777 46777
Q ss_pred HHHHHhhcCCC
Q 023133 265 IFEEMNSSLSD 275 (287)
Q Consensus 265 ~~~~~~~~~~~ 275 (287)
.+.++....++
T Consensus 256 ~L~~~l~~~~~ 266 (280)
T 1oyz_A 256 VLDTMLYKFDD 266 (280)
T ss_dssp HHHHHHTTSSC
T ss_pred HHHHHHhcCCC
Confidence 77777665443
No 423
>1n3k_A Astrocytic phosphoprotein PEA-15; death effector domain, six helix bundle, apoptosis; NMR {Cricetulus griseus} SCOP: a.77.1.4
Probab=20.04 E-value=1.7e+02 Score=19.04 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhccCChHHHHHH
Q 023133 50 DLSFQILKDLLVSSRTLSSDCYTNFARAFIMTDDCTQLLIF 90 (287)
Q Consensus 50 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 90 (287)
..+.++|..+.+.+.- +..-...|-..+...++.+....+
T Consensus 40 ~s~ldlF~~Lek~~~L-~~~nl~~L~eLL~~I~R~DLlkkI 79 (130)
T 1n3k_A 40 TTGSAWFSFLESHNKL-DKDNLSYIEHIFEISRRPDLLTMV 79 (130)
T ss_dssp CSHHHHHHHHHHTTTC-CSSCCHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHcCCC-CCccHHHHHHHHHHcChHHHHHHH
Confidence 3556666666555421 111222233444444555544433
Done!