BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023134
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JHB5|TSNAX_RAT Translin-associated protein X OS=Rattus norvegicus GN=Tsnax PE=1
SV=1
Length = 290
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 139/235 (59%), Gaps = 29/235 (12%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
AF ++ L+ ++K ER+VK SRDIT+ SK+ IF +H S + EE+L ++E+ L+ V
Sbjct: 38 AFKSFQQELDTRHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97
Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 172
+ Q + ++ +EL G D + RA + G+QEYVEA +F F RT +L+ +EE+N L +
Sbjct: 98 R-QKMLQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIRTRSLISMEEINRQLTFTT 156
Query: 173 DPAIEP-----------------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
D + + L+I DYLLG+ADLTGELMR+ I + +G+++ +
Sbjct: 157 DDSGKESKAPPADGQDKQLVTWRLKITPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
+ +F R +Y + + N+ ++ K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLSKVENACYALKVRGSE 266
>sp|Q9QZE7|TSNAX_MOUSE Translin-associated protein X OS=Mus musculus GN=Tsnax PE=1 SV=1
Length = 290
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 139/235 (59%), Gaps = 29/235 (12%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
AF ++ L+ ++K ER+VK SRDIT+ SK+ IF +H S + EE+L ++E+ L+ V
Sbjct: 38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEEILTESESKLDGV 97
Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS 172
+ Q I ++ +EL G D + RA + G+QEYVEA +F F +T +L+ +EE+N L +
Sbjct: 98 R-QKILQVAQELSGEDMHQFHRAVTTGLQEYVEAVSFQHFIKTRSLISMEEINKQLTFTA 156
Query: 173 D--------PAIEP---------LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
+ P E L++ DYLLG+ADLTGELMR+ I + +G+++ +
Sbjct: 157 EDSGKESKTPPAEGQEKQLVTWRLKLTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
+ +F R +Y + + N+ ++ K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
>sp|Q4R599|TSNAX_MACFA Translin-associated protein X OS=Macaca fascicularis GN=TSNAX PE=2
SV=1
Length = 290
Score = 142 bits (357), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 139/235 (59%), Gaps = 29/235 (12%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
AF ++ L+ ++K ER+VK SRDIT+ SK+ IF +H S + E++L ++E L+ V
Sbjct: 38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 169
+ Q I ++ +EL G D + RA + G+QEYVEA +F F +T +L+ ++E+N L+
Sbjct: 98 R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156
Query: 170 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
P SD E L++ DYLLG+ADLTGELMR+ I + +G+++ +
Sbjct: 157 DDNGKENKTPSSDTQDEQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
+ +F R +Y + + N+ ++ K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
>sp|Q5RC21|TSNAX_PONAB Translin-associated protein X OS=Pongo abelii GN=TSNAX PE=2 SV=1
Length = 290
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 139/235 (59%), Gaps = 29/235 (12%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
AF ++ L+ ++K ER+VK SRDIT+ SK+ IF +H S + E++L ++E L+ V
Sbjct: 38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 169
+ Q I ++ +EL G D + RA + G+QEYVEA +F F +T +L+ ++E+N L+
Sbjct: 98 R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156
Query: 170 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
P SD + L++ DYLLG+ADLTGELMR+ I + +G+++ +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
+ +F R +Y + + N+ ++ K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
>sp|Q99598|TSNAX_HUMAN Translin-associated protein X OS=Homo sapiens GN=TSNAX PE=1 SV=1
Length = 290
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 139/235 (59%), Gaps = 29/235 (12%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVH---SRDNKEEVLKKAEADLEAV 112
AF ++ L+ ++K ER+VK SRDIT+ SK+ IF +H S + E++L ++E L+ V
Sbjct: 38 AFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGV 97
Query: 113 KDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLL--- 169
+ Q I ++ +EL G D + RA + G+QEYVEA +F F +T +L+ ++E+N L+
Sbjct: 98 R-QKIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTT 156
Query: 170 ---------PLSDPAIEP-----LQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEK 215
P SD + L++ DYLLG+ADLTGELMR+ I + +G+++ +
Sbjct: 157 EDNGKENKTPSSDAQDKQFGTWRLRVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFE 216
Query: 216 ICRFSRDIYRELTLVVPLMDNNS---DMKTKMDTMLQSVLKIENACLSVHVRGSE 267
+ +F R +Y + + N+ ++ K+ T+ QS+ K+ENAC ++ VRGSE
Sbjct: 217 VSQFLRQVYDGFSFI-----GNTGPYEVSKKLYTLKQSLAKVENACYALKVRGSE 266
>sp|O74955|TSNAX_SCHPO Translin-associated protein X homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC736.09c PE=3 SV=1
Length = 231
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 117/217 (53%), Gaps = 16/217 (7%)
Query: 53 MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAV 112
M++ F ++ +L E +KRE++++ SR+ITI SK++IF +H + + + D ++
Sbjct: 1 MEEEFLSFKNFLQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSI 60
Query: 113 KDQYISR----LVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGL 168
++ I + L +EL G + K A + G+QEYVEA TF + +TGTLL +
Sbjct: 61 FEKKIHKELESLKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLSCK------ 114
Query: 169 LPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELT 228
D + + IN DY+LG+ D+TGE+MR + S ++ + +F R +++ +
Sbjct: 115 ----DSSFR-ISINFIDYVLGVCDMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCS 169
Query: 229 LVVPLMDN-NSDMKTKMDTMLQSVLKIENACLSVHVR 264
+ L S+++ K+ M S+ K+E C S +R
Sbjct: 170 EIEHLPSKVKSELQQKLSVMENSISKVEGICYSKILR 206
>sp|Q57639|Y175_METJA Uncharacterized protein MJ0175 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0175 PE=4 SV=1
Length = 222
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 30/187 (16%)
Query: 45 RTITTESYMK------DAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNK 98
+ I T Y+K D YL + RE ++K SR+IT + +I ++H D+K
Sbjct: 3 KQILTIGYIKFLVVAMDELNYLINYLANKDSVREEILKLSREITRDCAMLIRKIHKSDDK 62
Query: 99 EEVLKKAEADLEAVKDQYISRLVKELQG-TDFWKLRRAYSPGVQEYVEAATFCKFCRTGT 157
+E K IS +K+L F + S QE+VEA +
Sbjct: 63 DEFKDKLNE---------ISEKIKKLNSLATFPEFVGYLSTPQQEFVEALSLYMIKFDNK 113
Query: 158 LLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKIC 217
+ +EL+ I +Y+LGLAD+ GEL R + + + L E+
Sbjct: 114 IPSFKELDF--------------IKEENYILGLADVIGELRREVLEAMKNDNLAEVERYF 159
Query: 218 RFSRDIY 224
+F D+Y
Sbjct: 160 KFMEDLY 166
>sp|P79769|TSN_CHICK Translin OS=Gallus gallus GN=TSN PE=1 SV=1
Length = 229
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 103 KKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLE 162
+KA V+ Q + L + +++ + +Q V A+F + T TL+ E
Sbjct: 59 QKAREHFGTVRTQ-MESLKTKFPADQYYRFHEHWRFVLQRLVFLASFVVYLETETLVTRE 117
Query: 163 ELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRD 222
+ A +L + +++ DYL G+ L EL RLA+ ++ G+ +I F +
Sbjct: 118 AV-AEILGIEADRERGFHLDIEDYLSGVLTLASELARLAVNSVTAGDYSRPLRISTFINE 176
Query: 223 I---YRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRG 265
+ +R L L N ++ + D + V KIE + +RG
Sbjct: 177 LDSGFRLLNL------KNDSLRKRYDGLKYDVKKIEEVVYDLSIRG 216
>sp|Q0I9Y0|AROA_SYNS3 3-phosphoshikimate 1-carboxyvinyltransferase OS=Synechococcus sp.
(strain CC9311) GN=aroA PE=3 SV=1
Length = 439
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 84 NSKKVIFQVHSRDNKEEVLKKAEADLEA---------------VKDQYISRLVKELQGTD 128
S VI HSRD+ E +L+ ADLE +K Q++ + ++
Sbjct: 191 GSTSVIEPAHSRDHSERMLRAFGADLEVGGEMGRHILVRPGATLKGQHVV-VPGDISSAA 249
Query: 129 FWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLS--DPAIEPL 179
FW + A PG VE RTG L LE + A + L+ D A EP+
Sbjct: 250 FWLVAGALVPGATITVENVGL-NPTRTGILEVLEMMGASIEVLNRRDVAGEPV 301
>sp|O31046|LEU1_STRCO 2-isopropylmalate synthase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=leuA PE=3 SV=2
Length = 573
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 205 ISDGELEFAEKICRFSRDIY-----RELTLVVPLMDNNSDMKTKMDT---MLQSVLKIEN 256
+D EL+FA ++C D Y RE+ L +P S T D M +++ + E+
Sbjct: 188 FTDTELDFALEVCEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRREH 247
Query: 257 ACLSVHVRGSEYTLLGSSDPSFLMG 281
CLSVH T + +++ + + G
Sbjct: 248 VCLSVHPHNDRGTAVAAAELALMAG 272
>sp|Q82BV3|LEU1_STRAW 2-isopropylmalate synthase OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=leuA PE=3 SV=1
Length = 573
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 205 ISDGELEFAEKICRFSRDIY-----RELTLVVPLMDNNSDMKTKMDT---MLQSVLKIEN 256
+D EL+FA ++C D++ RE+ L +P S T D M +++ + E
Sbjct: 188 FTDTELDFALEVCEAVMDVWQPGPDREIILNLPATVERSTPSTHADRFEWMSRNLSRREY 247
Query: 257 ACLSVHVRGSEYTLLGSSDPSFLMG 281
CLSVH T + +++ + + G
Sbjct: 248 VCLSVHPHNDRGTAVAAAELALMAG 272
>sp|Q4K9V0|ATE_PSEF5 Putative arginyl-tRNA--protein transferase OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=ate PE=3
SV=1
Length = 235
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 68 NEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEAD---LEAVKDQYISRLVKEL 124
+ +++R++K + D+T+++ K F D + +++ AD +DQ+ + LV++L
Sbjct: 80 SRQQKRIIKRNSDLTVHAAKPCFSEEYFDLYQRYIEQRHADGDMFPPSRDQFSTFLVRDL 139
Query: 125 QGTDFWKLR 133
+ F++ R
Sbjct: 140 PFSRFYEFR 148
>sp|Q47RM9|LEU1_THEFY 2-isopropylmalate synthase OS=Thermobifida fusca (strain YX)
GN=leuA PE=3 SV=1
Length = 568
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 207 DGELEFAEKICRFSRDIY-----RELTLVVPLMDNNSDMKTKMDT---MLQSVLKIENAC 258
D ELEFA ++C D+Y RE+ L +P + D M +++ + E C
Sbjct: 189 DTELEFALEVCEAVMDVYQPGPDREIILNLPATVERATPNVYADQIEWMSRNLSRREYVC 248
Query: 259 LSVHVRGSEYTLLGSSDPSFLMG 281
LSVH T + +++ + + G
Sbjct: 249 LSVHPHNDRGTAVAAAELAVMAG 271
>sp|B6EWW8|V5NTD_GLOBR Snake venom 5'-nucleotidase OS=Gloydius brevicaudus PE=2 SV=1
Length = 588
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQ 115
AF Y GYLN + + + V+KSS + + +K + +D K EV K + L Q
Sbjct: 296 AFGKYLGYLNVIFDDKGNVIKSSGNPILLNKNI---SEDQDVKAEV-NKMKIQLHNYSSQ 351
Query: 116 YISRLVKELQGT 127
I + + L GT
Sbjct: 352 EIGKTIVYLNGT 363
>sp|F8S0Z7|V5NTD_CROAD Snake venom 5'-nucleotidase (Fragment) OS=Crotalus adamanteus PE=2
SV=1
Length = 526
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 56 AFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQ 115
AF Y GYLN + + + V+KSS + + +K + +D K EV K + L Q
Sbjct: 234 AFGKYLGYLNVIFDDKGNVIKSSGNPILLNKDI---SEDQDIKAEV-NKMKIQLHNYSSQ 289
Query: 116 YISRLVKELQGT 127
I + + L GT
Sbjct: 290 EIGKTIVYLNGT 301
>sp|Q88NK2|SYP_PSEPK Proline--tRNA ligase OS=Pseudomonas putida (strain KT2440) GN=proS
PE=3 SV=1
Length = 571
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 27 HRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSS 78
H L+++ T L+ +A P + TE+ ++DA AG L LN E ++ S
Sbjct: 300 HELNEIKATKLEQVAD-PLVMATEAELRDAIGAGAGSLGPLNLPLEIIIDRS 350
>sp|A5VZT5|SYP_PSEP1 Proline--tRNA ligase OS=Pseudomonas putida (strain F1 / ATCC
700007) GN=proS PE=3 SV=1
Length = 571
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 27 HRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSS 78
H L+++ T L+ +A P + TE+ ++DA AG L LN E ++ S
Sbjct: 300 HELNEIKATKLEQVAD-PLVMATEAELRDAIGAGAGSLGPLNLPLEIIIDRS 350
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 178 PLQINVFDYLLGLADLTGELMRLAIGRISD-----GELEFAEKICR--FSRDIYRELTLV 230
P+ + D LG+ D G + + GR+ G +E ++ + F++DIY+ L V
Sbjct: 43 PIDGGLMDTRLGVID-PGLVCKSCSGRVGTCPGHFGHIELSKSVIHIGFAKDIYKLLKAV 101
Query: 231 VPLMDNNSDMKTKMDTMLQSVLKIE 255
P + + K D L+ +LK+E
Sbjct: 102 CPHCGKVTVTEIKRDEYLEKMLKLE 126
>sp|Q59677|MUTB_PORGI Methylmalonyl-CoA mutase large subunit OS=Porphyromonas gingivalis
(strain ATCC BAA-308 / W83) GN=mutB PE=3 SV=1
Length = 715
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 86 KKVIFQVHS-RDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYV 144
++VI V+ R KE+ + E D AV+ Q I RL D R VQE +
Sbjct: 456 QQVIVGVNKYRLPKEDPIDILEIDNTAVRKQQIERL------NDLRSHRD--EKAVQEAL 507
Query: 145 EAATFCKFCRTGTLLDLEELNAGL 168
EA T C + G LLDL AGL
Sbjct: 508 EAITKCVETKEGNLLDLAVKAAGL 531
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,014,863
Number of Sequences: 539616
Number of extensions: 3855974
Number of successful extensions: 12306
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 12271
Number of HSP's gapped (non-prelim): 36
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)