Query 023134
Match_columns 287
No_of_seqs 149 out of 414
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 08:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3066 Translin-associated pr 100.0 1.3E-61 2.7E-66 426.8 18.8 242 43-286 25-271 (271)
2 PF01997 Translin: Translin fa 100.0 6.2E-58 1.3E-62 406.6 17.7 196 68-266 1-200 (200)
3 PRK14562 haloacid dehalogenase 100.0 6.1E-53 1.3E-57 375.9 22.2 194 53-267 2-196 (204)
4 KOG3067 Translin family protei 100.0 2.3E-46 5E-51 323.7 17.1 209 54-267 5-217 (226)
5 COG2178 Predicted RNA-binding 100.0 2.2E-40 4.9E-45 289.5 21.5 186 54-260 2-187 (204)
6 PF06892 Phage_CP76: Phage reg 66.6 31 0.00067 29.9 7.5 48 182-230 89-136 (162)
7 KOG4098 Molecular chaperone Pr 56.6 79 0.0017 26.8 7.8 45 48-93 15-69 (140)
8 PF04124 Dor1: Dor1-like famil 55.3 1.9E+02 0.0042 27.5 13.5 25 203-227 115-139 (338)
9 COG1283 NptA Na+/phosphate sym 44.5 3.8E+02 0.0083 27.8 16.8 40 185-224 442-481 (533)
10 PF11473 B2: RNA binding prote 35.5 44 0.00095 25.1 2.9 45 213-262 12-56 (73)
11 PF01765 RRF: Ribosome recycli 35.4 2.8E+02 0.0061 23.6 8.9 25 69-93 90-114 (165)
12 PF15642 Tox-ODYAM1: Toxin in 35.2 2.6E+02 0.0057 26.7 8.6 29 55-83 116-144 (385)
13 TIGR00496 frr ribosome recycli 35.0 2.9E+02 0.0062 24.2 8.5 70 24-93 37-123 (176)
14 PF15605 Toxin_52: Putative to 34.3 1.1E+02 0.0023 24.8 5.1 70 180-258 20-101 (103)
15 PF15647 Tox-REase-3: Restrict 32.5 53 0.0011 26.6 3.1 18 129-146 81-98 (109)
16 COG0233 Frr Ribosome recycling 28.3 4.2E+02 0.0092 23.7 8.4 55 68-122 109-175 (187)
17 PRK00083 frr ribosome recyclin 27.8 4.2E+02 0.0092 23.3 8.5 26 68-93 107-132 (185)
18 PF12463 DUF3689: Protein of u 27.6 69 0.0015 30.6 3.6 24 183-206 157-180 (303)
19 PF03918 CcmH: Cytochrome C bi 26.4 54 0.0012 28.0 2.4 42 191-234 56-97 (148)
20 cd02682 MIT_AAA_Arch MIT: doma 26.2 2.9E+02 0.0063 20.9 6.3 68 190-257 2-69 (75)
21 PF07361 Cytochrom_B562: Cytoc 24.0 2.4E+02 0.0052 22.4 5.6 43 183-226 55-97 (103)
22 PF05278 PEARLI-4: Arabidopsis 23.7 1.5E+02 0.0032 28.0 4.9 39 182-220 123-161 (269)
23 KOG3910 Helix loop helix trans 23.4 1.6E+02 0.0036 30.3 5.4 43 67-111 529-577 (632)
24 cd00520 RRF Ribosome recycling 23.0 5.1E+02 0.011 22.6 8.3 70 24-93 42-128 (179)
25 cd07612 BAR_Bin2 The Bin/Amphi 22.6 5.8E+02 0.013 23.1 11.5 87 57-146 93-187 (211)
26 PF02601 Exonuc_VII_L: Exonucl 22.0 6.5E+02 0.014 23.4 10.1 82 2-90 94-175 (319)
27 cd00687 Terpene_cyclase_nonpla 21.9 2.7E+02 0.0059 25.4 6.4 32 133-164 131-163 (303)
28 PF10157 DUF2365: Uncharacteri 21.4 3E+02 0.0066 23.6 6.0 37 215-258 113-149 (149)
29 TIGR03147 cyt_nit_nrfF cytochr 20.3 89 0.0019 26.1 2.5 42 192-235 57-98 (126)
30 PF10046 BLOC1_2: Biogenesis o 20.1 4.3E+02 0.0093 20.6 6.6 72 183-261 8-85 (99)
No 1
>KOG3066 consensus Translin-associated protein X [General function prediction only]
Probab=100.00 E-value=1.3e-61 Score=426.75 Aligned_cols=242 Identities=40% Similarity=0.567 Sum_probs=224.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHHHHH
Q 023134 43 RPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHS---RDNKEEVLKKAEADLEAVKDQYISR 119 (287)
Q Consensus 43 ~~~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~---~~~~~~~l~~A~~~L~~v~~~~~~~ 119 (287)
.+++|++++++.+.|.+|+++|++.||+||||+|+|||||.+||++||.+|+ ..++++++.++...|+.++.+++..
T Consensus 25 kartmsteSsm~~aF~sf~~~L~~~~dKrEriVklSRdITi~SKr~IFllHr~ss~~~~e~~l~~~~~~le~vr~k~f~~ 104 (271)
T KOG3066|consen 25 KARTMSTESSMEEAFLSFKNFLQEDQDKRERIVKLSRDITIQSKRMIFLLHRTSSSGFPEPKLFDRTSILEKVRHKEFES 104 (271)
T ss_pred cccccCccchHHHHHHHHHHHHHHhHHHHHHHHhhhhhheeccceeeeeeeecccCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999994 3567789999999999999999999
Q ss_pred HHHHhcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHH
Q 023134 120 LVKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMR 199 (287)
Q Consensus 120 La~~L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR 199 (287)
++.+|+|.++|+|++++++|+||||||++|++|+.+|+|.+.+||+..+.++..+ .++.|++.||++|+|||||||||
T Consensus 105 l~~EL~G~d~~kf~rA~t~GlQEYVEAvtF~~f~lsgtLc~~dein~~lvpl~~~--~rl~in~iDYvLGvaDlTGElMR 182 (271)
T KOG3066|consen 105 LKRELAGLDADKFSRACTHGLQEYVEAVTFKFFLLSGTLCQTDEINSCLVPLDSS--FRLSINFIDYVLGVADLTGELMR 182 (271)
T ss_pred HHHHhcCCcHHHHHHhhcccHHHHHHHHHHHHHHHhccccchhhhhheecccCCc--cceeeeHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877665 57999999999999999999999
Q ss_pred HHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccccccCC-CCCc-c
Q 023134 200 LAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLG-SSDP-S 277 (287)
Q Consensus 200 ~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e~~~~~-~~~~-~ 277 (287)
+|||++++|+++.+.++++|+++||.+|+.+.+......++.+|+.||++||-|||++||.++|||+|+|.++ .++| .
T Consensus 183 m~I~~~s~g~I~~~~~~~qFlRq~h~~~s~i~~~~~~~ye~~~Kl~vm~qSi~KvEnaCys~~vRg~e~~~l~l~~~~~~ 262 (271)
T KOG3066|consen 183 MLITNGSKGSIQQLTQQVQFLRQLHKNCSEIEHLPSKKYELQQKLSVMEQSISKVENACYSKIVRGAEKRYLNLEVDTAT 262 (271)
T ss_pred HHHhcCcCcchhhHHHHHHHHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHHHHhHHHHHHhcccccccccccccccC
Confidence 9999999999999999999999999999998654433679999999999999999999999999999988655 7777 7
Q ss_pred cccCCCCCC
Q 023134 278 FLMGVPDMQ 286 (287)
Q Consensus 278 ~~~~~~~~~ 286 (287)
.+.++.|+|
T Consensus 263 ~~~e~~d~e 271 (271)
T KOG3066|consen 263 PPEEKRDRE 271 (271)
T ss_pred CchhhhhcC
Confidence 778887765
No 2
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=100.00 E-value=6.2e-58 Score=406.55 Aligned_cols=196 Identities=42% Similarity=0.661 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhcchhHHHHHH
Q 023134 68 NEKRERVVKSSRDITINSKKVIFQVHSRDN--KEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLRRAYSPGVQEYVE 145 (287)
Q Consensus 68 ~d~REriik~SRdIt~~SKk~If~lH~~~~--~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~~ry~~~~s~~lQEyVE 145 (287)
||+||+|+|+|||||++||++||++|+.+. ..+++++|++.++++.+ .+..++ ++++.++|+|++.|++|+|||||
T Consensus 1 ~d~RE~iik~sRdi~~~Sk~~I~~lhr~~~~~~~~~l~~a~~~l~~l~~-~~~~l~-~~~~~~~~~y~~~~s~~lQE~vE 78 (200)
T PF01997_consen 1 HDRRERIIKLSRDITRLSKKIIFALHRIDQEKAEKILEEAEEKLKELKK-LLKQLA-ELPGHPFYRYHGAYSPGLQEYVE 78 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTCTTHHHHHHHHHHHHHHHHHHC-HSHHHH-HCTTCGHHHHGGGTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-HHhhhc-ccCCCcHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999997665 45789999999999886 789999 99999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHH
Q 023134 146 AATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYR 225 (287)
Q Consensus 146 A~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~ 225 (287)
|++|++||++|+|+|++|+++.|.... .....|+|+++|||+||+||||||||+|||+++.||++.|.++++||++||.
T Consensus 79 a~~f~~~l~~~~L~t~~ev~~~l~~~~-~~~~~~~v~~~dYL~Gl~DltGEL~R~ai~~v~~gd~~~~~~i~~f~~~l~~ 157 (200)
T PF01997_consen 79 AISFYHYLETGRLLTPEEVGEILGFSE-DDEDRFHVTPEDYLLGLADLTGELMRYAINSVTKGDYERPEKILEFMRELYS 157 (200)
T ss_dssp HHHHHHHHHHSSS--HHHHHHHCTCBS-STSCSSB--HHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHhhcc-ccccceecCHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999875433 3366799999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCC--CCCcchhhHHHHHHHHHHHHhhhhhheeecc
Q 023134 226 ELTLVVPLMD--NNSDMKTKMDTMLQSVLKIENACLSVHVRGS 266 (287)
Q Consensus 226 ~f~~L~~~lk--~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~ 266 (287)
+|..|+++.. .|++||||+|++||+|+|+|++||+++||||
T Consensus 158 ~~~~l~~~~~~~~n~~LrkK~d~~k~~l~KvE~~~y~l~vRgs 200 (200)
T PF01997_consen 158 GFQLLNLPDAIVKNDELRKKFDVLKYSLKKVEEVVYDLSVRGS 200 (200)
T ss_dssp HHHTSGGTTGS--SHHHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCcchhhcccchhHHHHHHHHHHHHHHHHHHhHhhhhcCC
Confidence 9999965321 2899999999999999999999999999997
No 3
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=100.00 E-value=6.1e-53 Score=375.87 Aligned_cols=194 Identities=26% Similarity=0.300 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh
Q 023134 53 MKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKL 132 (287)
Q Consensus 53 ~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~~~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~~ry 132 (287)
+.++|++++++||++|++||+|+|+|||||+.||++||++|+.+ +++|++.++++.+ .+.+|++.+++.++|+|
T Consensus 2 ~~~~~~~~~~~Ld~~~~~RE~iik~sRdI~~~Sk~~I~~lHr~~-----~~~a~~~l~~a~~-~~~~l~~~~~~~~~~~y 75 (204)
T PRK14562 2 IEEIIDSIREELEEKDEAREEALKLSREIVRLSGDAIRAIHRGD-----FEEAEKLLKEAEE-LVKELKELLKDHPELYY 75 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHH-HHHHHHHHhccCchhhh
Confidence 46789999999999999999999999999999999999999876 7888888988887 68899999999999999
Q ss_pred hhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHH
Q 023134 133 RRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEF 212 (287)
Q Consensus 133 ~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~ 212 (287)
++.|++|+||||||++|++|+++|+|||++| ++|+++|||+||||+||||||||+|+++.||++.
T Consensus 76 ~~~~~~~lQEyvEA~~f~~~l~~~~l~s~ee---------------l~v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~ 140 (204)
T PRK14562 76 AGYVGTALQEYVEALLVYSLLFENKIPSPEE---------------LGVPEAAYLLGLADAIGELRRHILELLRKGEIEE 140 (204)
T ss_pred hhhcchHHHHHHHHHHHHHHHcCCCCCCHHH---------------cCCCHHHHHhHHHHHHhHHHHHHHHHHhcCChHH
Confidence 9999999999999999999999999999998 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHH-Hhhhhhheeeccc
Q 023134 213 AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKI-ENACLSVHVRGSE 267 (287)
Q Consensus 213 ~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKi-E~v~Ydl~vRg~e 267 (287)
|+++++||++||.+|+.|+++.+.+++||||+|++||+|+|+ ++++|....++++
T Consensus 141 ~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~lekt~~d~~~~~~~~~l~ 196 (204)
T PRK14562 141 AEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLLERTRGDLTNAILNRKLE 196 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999554323459999999999999999 6678877776654
No 4
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=100.00 E-value=2.3e-46 Score=323.71 Aligned_cols=209 Identities=21% Similarity=0.356 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 023134 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKV---IFQVHSRD-NKEEVLKKAEADLEAVKDQYISRLVKELQGTDF 129 (287)
Q Consensus 54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~---If~lH~~~-~~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~ 129 (287)
+++|.++++.+|+.++.||+|.+.+++|...+|.+ +..+|+.. ..++.|..|++.+..+.. ++..|++..+..+|
T Consensus 5 ~sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq-~~~~LaE~~~~~qy 83 (226)
T KOG3067|consen 5 KSIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQ-KYRMLAELPPAGQY 83 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH-HHHHHhhcCCccce
Confidence 58999999999999999999999999999999987 45677544 467899999999999876 78999999999999
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCc
Q 023134 130 WKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGE 209 (287)
Q Consensus 130 ~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd 209 (287)
|||++.|...+|..|....|.+||++|.|+|++++.+.| +++....++||++.+|||.|++-|++||.|+++|+|+.||
T Consensus 84 yry~~~w~~~~Q~vv~l~alv~~Let~~Llt~e~v~eil-gl~p~~s~~FhLdvedyl~gvl~L~seLsR~svNsVtaGd 162 (226)
T KOG3067|consen 84 YRYNGHWRRSTQRVVSLPALVAWLETGTLLTREEVTEIL-GLEPDRSEGFHLDVEDYLSGVLFLASELSRQSVNSVTAGD 162 (226)
T ss_pred EEecchHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHh-cCCccccccceeeHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 999999999999999999999999999999999998866 6666666789999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccc
Q 023134 210 LEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE 267 (287)
Q Consensus 210 ~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e 267 (287)
|++|..+++|+.+++++|++| |+| ||+||||||+|||+|||+|+|+||++|||+-
T Consensus 163 Y~~Pl~v~~fi~dlhs~FrlL--nLK-ndsLRK~fDgLkYDlkrvEeVvYDv~Irgl~ 217 (226)
T KOG3067|consen 163 YHRPLHVSNFINDLHSGFRLL--NLK-NDSLRKRFDGLKYDLKRVEEVVYDVSIRGLV 217 (226)
T ss_pred cCCchHHHHHHhhhcccceee--ecc-chhhhccccchhhhHHhhhhhheeeeeeccc
Confidence 999999999999999999999 888 9999999999999999999999999999986
No 5
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-40 Score=289.45 Aligned_cols=186 Identities=27% Similarity=0.383 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhh
Q 023134 54 KDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGTDFWKLR 133 (287)
Q Consensus 54 ~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~~~~~~l~~A~~~L~~v~~~~~~~La~~L~~~~~~ry~ 133 (287)
.+.+.++++.|+++++.||+++++||+|+++|+.+|+++|+++ +++|+..++++.+ .+..|...+.+.+-..|.
T Consensus 2 ~e~i~si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~~-----~eeA~~~l~~a~~-~v~~Lk~~l~~~pel~~a 75 (204)
T COG2178 2 REEINSIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRGD-----FEEAEKKLKKASE-AVEKLKRLLAGFPELYFA 75 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHH
Confidence 4579999999999999999999999999999999999999888 8999999998877 678888888876666666
Q ss_pred hhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHH
Q 023134 134 RAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFA 213 (287)
Q Consensus 134 ~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~ 213 (287)
+..+.|+||||||.+|+.|++++.+++++| ++|++.+||+|+||++|||||++++.+..|+++.|
T Consensus 76 g~~~~a~QEyvEA~~l~~~l~~~~~ps~~E---------------L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~A 140 (204)
T COG2178 76 GFVTTALQEYVEATLLYSILKDGRLPSPEE---------------LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEA 140 (204)
T ss_pred HhhcchHHHHHHHHHHHHHHhcCCCCCHHH---------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 778999999999999999999999999988 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhh
Q 023134 214 EKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLS 260 (287)
Q Consensus 214 ~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Yd 260 (287)
++.++||++||..++.+.++-+..++||||+|++|+.++|+..-+..
T Consensus 141 e~~~~~ME~lY~~Lm~fdyP~~l~~~LR~K~Dvar~~lekt~~dl~~ 187 (204)
T COG2178 141 ERFLKFMEKLYEELMEFDYPKALVPGLRQKQDVARSLLEKTKSDLFR 187 (204)
T ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999666555679999999999999999864443
No 6
>PF06892 Phage_CP76: Phage regulatory protein CII (CP76); InterPro: IPR009679 This entry is represented by Bacteriophage 186, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny [].
Probab=66.57 E-value=31 Score=29.85 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=41.1
Q ss_pred ChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhh
Q 023134 182 NVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLV 230 (287)
Q Consensus 182 ~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L 230 (287)
++.+|++...--.|||+|-++..+..|.+.+.++ -.++++++.+++.|
T Consensus 89 ~l~~~~l~~~a~~Gela~~a~ea~~dgrit~~er-~~i~~~a~~ai~~l 136 (162)
T PF06892_consen 89 SLPERVLKATAEVGELAREALEALSDGRITRSER-NRIIKEANAAIRSL 136 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHH-HHHHHHHHHHHHHH
Confidence 8899999999999999999999999999888776 56677777776654
No 7
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=56.62 E-value=79 Score=26.80 Aligned_cols=45 Identities=13% Similarity=0.294 Sum_probs=28.0
Q ss_pred CCcchHHHHHHHHHHHHhhH--------HHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 023134 48 TTESYMKDAFANYAGYLNEL--------NEKRE--RVVKSSRDITINSKKVIFQVH 93 (287)
Q Consensus 48 ~~~~~~~~~F~~~~~~Ld~~--------~d~RE--riik~SRdIt~~SKk~If~lH 93 (287)
.....+...|+.+|+++... .|+|| .+++.-.|+. .++++.+.||
T Consensus 15 ~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~d-p~RKCfRmIg 69 (140)
T KOG4098|consen 15 SSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLD-PTRKCFRMIG 69 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-hhhHHHHHhc
Confidence 33456778888888887543 45565 4555555544 4566666666
No 8
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=55.35 E-value=1.9e+02 Score=27.52 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.1
Q ss_pred hhhcCCchHHHHHHHHHHHHHHHHH
Q 023134 203 GRISDGELEFAEKICRFSRDIYREL 227 (287)
Q Consensus 203 n~v~~Gd~~~~~~i~~fm~~Iy~~f 227 (287)
.||++|.|++|..+..+++.+...+
T Consensus 115 ~ci~~g~y~eALel~~~~~~L~~~~ 139 (338)
T PF04124_consen 115 TCIRNGNYSEALELSAHVRRLQSRF 139 (338)
T ss_pred HHHhcccHhhHHHHHHHHHHHHHhc
Confidence 7788999999999999988776554
No 9
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=44.51 E-value=3.8e+02 Score=27.77 Aligned_cols=40 Identities=33% Similarity=0.425 Sum_probs=32.5
Q ss_pred hHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHH
Q 023134 185 DYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIY 224 (287)
Q Consensus 185 dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy 224 (287)
.=|-.+.++|=|..|.|.+.+..||.+.+.+..+-.+++.
T Consensus 442 ~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~~~r 481 (533)
T COG1283 442 EELDALFALTLENLRLAISVLVTGDLELARRLVERKKRVR 481 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4466788999999999999999999999988765554443
No 10
>PF11473 B2: RNA binding protein B2; InterPro: IPR024377 Protein B2 binds double-strand RNA (dsRNA) with high affinity and suppresses the host RNA silencing-based antiviral response. B2 is expressed by the insect Flock House virus (FHV) as a counter-defense mechanism against antiviral RNA silencing during infection. In vitro, B2 binds to dsRNA as a dimer and inhibits the cleavage of it by Dicer. B2 blocks cleavage of the FHV genome by Dicer and also the incorporation of FHV small interfering RNAs into the RNA-induced silencing complex [].; PDB: 2AZ2_A 2B9Z_A 2AZ0_A.
Probab=35.53 E-value=44 Score=25.07 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhhe
Q 023134 213 AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVH 262 (287)
Q Consensus 213 ~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~ 262 (287)
|.+|+..++.+-+.. |... ....||-+|.++-+|.|.|..|+..+
T Consensus 12 p~~iq~aV~~~~~~~----~~~~-p~~V~kDLdn~kaCL~K~e~T~~r~~ 56 (73)
T PF11473_consen 12 PDRIQQAVEAAIDMS----YQCA-PNNVRKDLDNYKACLNKAEATVFRAT 56 (73)
T ss_dssp HHHHHHHHHHHHCS-----GTTS--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC----cccC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666553322 2221 33789999999999999999998764
No 11
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=35.43 E-value=2.8e+02 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 023134 69 EKRERVVKSSRDITINSKKVIFQVH 93 (287)
Q Consensus 69 d~REriik~SRdIt~~SKk~If~lH 93 (287)
+.|++++|.+..+...+|..|+.+.
T Consensus 90 E~R~~l~k~~k~~~E~~k~~iR~iR 114 (165)
T PF01765_consen 90 ERRKELVKQAKKIAEEAKVSIRNIR 114 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888776
No 12
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=35.21 E-value=2.6e+02 Score=26.71 Aligned_cols=29 Identities=3% Similarity=0.085 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023134 55 DAFANYAGYLNELNEKRERVVKSSRDITI 83 (287)
Q Consensus 55 ~~F~~~~~~Ld~~~d~REriik~SRdIt~ 83 (287)
.+.+.=+.++...++.||+-+..-|+++.
T Consensus 116 Rn~~Er~~~iTt~~qq~ee~Le~k~~~is 144 (385)
T PF15642_consen 116 RNHEERRKKITTSHQQHEEALEKKKEDIS 144 (385)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34555566677777778877777777654
No 13
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=34.95 E-value=2.9e+02 Score=24.20 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=42.0
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHH----------------H-hhHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY----------------L-NELNEKRERVVKSSRDITINSK 86 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~----------------L-d~~~d~REriik~SRdIt~~SK 86 (287)
..+.||.+++...+.++.--.=+....+.+..+-..+.+. + .--.++|++++|.++.+.-.+|
T Consensus 37 g~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lglnP~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aK 116 (176)
T TIGR00496 37 GAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAK 116 (176)
T ss_pred CCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456777655443333221122223345555665555541 0 1124789999999999999999
Q ss_pred HHHHHHh
Q 023134 87 KVIFQVH 93 (287)
Q Consensus 87 k~If~lH 93 (287)
-.|+.++
T Consensus 117 v~iRniR 123 (176)
T TIGR00496 117 VAVRNVR 123 (176)
T ss_pred HHHHHHH
Confidence 9988877
No 14
>PF15605 Toxin_52: Putative toxin 52
Probab=34.28 E-value=1.1e+02 Score=24.81 Aligned_cols=70 Identities=20% Similarity=0.222 Sum_probs=44.6
Q ss_pred ccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhh----hcCCCCCCCc--------chhhHHHH
Q 023134 180 QINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTL----VVPLMDNNSD--------MKTKMDTM 247 (287)
Q Consensus 180 ~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~----L~~~lk~n~~--------LRkK~D~l 247 (287)
|++..||-..+=||-||..| ..+ -.++.-++=|++-|.||.- |-.-++ |.. +.+|++..
T Consensus 20 hltd~D~sgt~Rdl~G~pVp-------Kp~-GgywdHlqEm~da~~GL~n~~~~le~~L~-np~l~~~~r~~lq~~l~ea 90 (103)
T PF15605_consen 20 HLTDMDFSGTLRDLQGNPVP-------KPD-GGYWDHLQEMQDAYRGLVNRKRTLEGSLK-NPNLSGRTRELLQSKLNEA 90 (103)
T ss_pred hccccchHHHHHHHcCCccc-------CCC-CCccHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHHH
Confidence 56777888888888777643 322 2234445556666666642 111122 344 78999999
Q ss_pred HHHHHHHHhhh
Q 023134 248 LQSVLKIENAC 258 (287)
Q Consensus 248 k~slkKiE~v~ 258 (287)
-+-++|||+.+
T Consensus 91 ~~~l~kiE~~~ 101 (103)
T PF15605_consen 91 NNYLDKIEDFF 101 (103)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 15
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=32.49 E-value=53 Score=26.56 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=13.1
Q ss_pred hhhhhhhcchhHHHHHHH
Q 023134 129 FWKLRRAYSPGVQEYVEA 146 (287)
Q Consensus 129 ~~ry~~~~s~~lQEyVEA 146 (287)
+|-|.+.+.+-++||+|-
T Consensus 81 ~f~F~~~v~~kv~eY~e~ 98 (109)
T PF15647_consen 81 YFWFKGEVHDKVKEYIER 98 (109)
T ss_pred EEEecccccHHHHHHHHH
Confidence 444556678889999985
No 16
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=28.34 E-value=4.2e+02 Score=23.66 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------chHHHHHHHHHHHHHHHHHHHHHHHH
Q 023134 68 NEKRERVVKSSRDITINSKKVIFQVHSRD------------NKEEVLKKAEADLEAVKDQYISRLVK 122 (287)
Q Consensus 68 ~d~REriik~SRdIt~~SKk~If~lH~~~------------~~~~~l~~A~~~L~~v~~~~~~~La~ 122 (287)
.++|.+++|..+...-.+|-.|+.+-+.- -.+..+..+++.++++.+.+++++-+
T Consensus 109 eErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~ 175 (187)
T COG0233 109 EERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDE 175 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888899999888888887777665211 01234566777777766655555443
No 17
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=27.79 E-value=4.2e+02 Score=23.31 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023134 68 NEKRERVVKSSRDITINSKKVIFQVH 93 (287)
Q Consensus 68 ~d~REriik~SRdIt~~SKk~If~lH 93 (287)
.++|++++|.++.+.-.+|-.|+.+.
T Consensus 107 ~E~R~elvK~~k~~~E~aKv~iRniR 132 (185)
T PRK00083 107 EERRKELVKQVKKEAEEAKVAIRNIR 132 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998888776
No 18
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=27.55 E-value=69 Score=30.63 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.3
Q ss_pred hhhHHhhHHHhHHHHHHHHhhhhc
Q 023134 183 VFDYLLGLADLTGELMRLAIGRIS 206 (287)
Q Consensus 183 ~~dYLlGL~DLtGELmR~ain~v~ 206 (287)
...-+.+.+||-|||+|+-.+...
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~~~f~ 180 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNRDAFQ 180 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHH
Confidence 457899999999999999876654
No 19
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=26.41 E-value=54 Score=28.00 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=33.4
Q ss_pred HHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCC
Q 023134 191 ADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLM 234 (287)
Q Consensus 191 ~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~l 234 (287)
+++..+|++..-+.+..|.-+ .+|.++|.+-|..+.+..|+.
T Consensus 56 a~~A~dmR~~I~~~l~~G~s~--~eI~~~~v~rYG~~Vl~~Pp~ 97 (148)
T PF03918_consen 56 APIARDMRREIREMLAEGKSD--EEIIDYFVERYGEFVLYEPPF 97 (148)
T ss_dssp SHHHHHHHHHHHHHHHHT--H--HHHHHHHHHHHTTT-EES--S
T ss_pred cHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCcceeecCCC
Confidence 788999999999999999755 689999999999998877764
No 20
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=26.16 E-value=2.9e+02 Score=20.90 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=41.4
Q ss_pred HHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhh
Q 023134 190 LADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENA 257 (287)
Q Consensus 190 L~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v 257 (287)
|.+...++.+-||.+=..|++++|..+.+-==++-..+..+.|+-+....+|.|+-.-..-++.++..
T Consensus 2 L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~ 69 (75)
T cd02682 2 LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQ 69 (75)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999877654333333333333333221334566666666655555554
No 21
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=24.03 E-value=2.4e+02 Score=22.37 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=35.2
Q ss_pred hhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHH
Q 023134 183 VFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRE 226 (287)
Q Consensus 183 ~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~ 226 (287)
..+|.-|+=.|++|+-. +-..+-.|+++.|...+.-|.++...
T Consensus 55 ~~~Y~~Gl~~li~~id~-a~~~~~~G~l~~AK~~l~~l~~lR~e 97 (103)
T PF07361_consen 55 VKDYQEGLDKLIDQIDK-AEALAEAGKLDEAKAALKKLDDLRKE 97 (103)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999975 45678899999999888877776543
No 22
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.74 E-value=1.5e+02 Score=28.04 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=27.9
Q ss_pred ChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHH
Q 023134 182 NVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFS 220 (287)
Q Consensus 182 ~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm 220 (287)
.-.-||-.||+++-||--..+..++.-++..+..++.-|
T Consensus 123 ~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DL 161 (269)
T PF05278_consen 123 FRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDL 161 (269)
T ss_pred HHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHH
Confidence 356899999999999976667777776665544443333
No 23
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=23.40 E-value=1.6e+02 Score=30.26 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhc-CCc---hHHHHHHHHHHHHH
Q 023134 67 LNEKRERVVKSSRDITINSKKV--IFQVHS-RDN---KEEVLKKAEADLEA 111 (287)
Q Consensus 67 ~~d~REriik~SRdIt~~SKk~--If~lH~-~~~---~~~~l~~A~~~L~~ 111 (287)
-|..||||+ +|||..+=|+. ...+|- .++ +--++.+|-..|-.
T Consensus 529 aNNARERlR--VRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIls 577 (632)
T KOG3910|consen 529 ANNARERLR--VRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILS 577 (632)
T ss_pred hhhhhhhee--hhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHH
Confidence 356788875 79999998887 668883 222 12367777776544
No 24
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=22.97 E-value=5.1e+02 Score=22.56 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=40.1
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHH----------------H-hhHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY----------------L-NELNEKRERVVKSSRDITINSK 86 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~----------------L-d~~~d~REriik~SRdIt~~SK 86 (287)
...+|+.+++.-+..++.--.=+....+.+..+-..+++. + .--.++|++++|.+....-.+|
T Consensus 42 g~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~K 121 (179)
T cd00520 42 GAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAK 121 (179)
T ss_pred CCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHCCCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4466777654443333211112222334555555555541 0 1123789999999999888888
Q ss_pred HHHHHHh
Q 023134 87 KVIFQVH 93 (287)
Q Consensus 87 k~If~lH 93 (287)
..|+.+.
T Consensus 122 v~iRniR 128 (179)
T cd00520 122 VAIRNIR 128 (179)
T ss_pred HHHHHHH
Confidence 8888765
No 25
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=22.59 E-value=5.8e+02 Score=23.11 Aligned_cols=87 Identities=17% Similarity=0.313 Sum_probs=52.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCh
Q 023134 57 FANYAGYLNELNEKRERVVKSSRDITIN--SKKVIFQVHS-RDNKEEVLKKAEADLEAVKDQYISR----LVKELQGTDF 129 (287)
Q Consensus 57 F~~~~~~Ld~~~d~REriik~SRdIt~~--SKk~If~lH~-~~~~~~~l~~A~~~L~~v~~~~~~~----La~~L~~~~~ 129 (287)
.+.+...+.-.-+.|++|.|..|...-. +|.-...+.. +.+.+.-+.+|++.+..+.+ .+.. |..+||. .
T Consensus 93 L~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~kD~~KL~kAe~el~~Ak~-~ye~lN~~L~~ELP~--L 169 (211)
T cd07612 93 LRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKKDDAKIAKAEEEFNRAQV-VFEDINRELREELPI--L 169 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--H
Confidence 4455566667778899999999998877 6666777762 22334456777777766554 2333 4444442 2
Q ss_pred hhhhh-hcchhHHHHHHH
Q 023134 130 WKLRR-AYSPGVQEYVEA 146 (287)
Q Consensus 130 ~ry~~-~~s~~lQEyVEA 146 (287)
|..+- .+.|.+|-++-+
T Consensus 170 ~~~Ri~f~~psFeal~~~ 187 (211)
T cd07612 170 YDSRIGCYVTVFQNISNL 187 (211)
T ss_pred HHhcchHHHHHHHHHHHH
Confidence 22221 345566665543
No 26
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.97 E-value=6.5e+02 Score=23.43 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=37.2
Q ss_pred CchhhhHHhhhccccchhhhccCccccccccccccccccccCCCCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 023134 2 FHAPALRSWISSSRSPIIMASKSKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDI 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdI 81 (287)
|.-..+-..|-.+.+|++.|=- |+ ....+.+-..-.+.-+++..-.-+.....+.....++.++++....+..
T Consensus 94 FN~e~varai~~~~~PvisaIG------He-~D~ti~D~vAd~ra~TPtaaAe~~~~~~~~~~~~l~~~~~~l~~~~~~~ 166 (319)
T PF02601_consen 94 FNDEEVARAIAASPIPVISAIG------HE-TDFTIADFVADLRAPTPTAAAELIVPDRRELLQRLDELRQRLNRAMRNR 166 (319)
T ss_pred cChHHHHHHHHhCCCCEEEecC------CC-CCchHHHHHHHhhCCCHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666667777777665543 33 1222222111111112222222233444444455556666666665554
Q ss_pred HHHHHHHHH
Q 023134 82 TINSKKVIF 90 (287)
Q Consensus 82 t~~SKk~If 90 (287)
....+.-+.
T Consensus 167 l~~~~~~L~ 175 (319)
T PF02601_consen 167 LQRKRQRLN 175 (319)
T ss_pred HHHHHHHHH
Confidence 444444433
No 27
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=21.93 E-value=2.7e+02 Score=25.44 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=21.4
Q ss_pred hhhcchhHHHHHHHHHHHH-HHhcCCCCCHHHH
Q 023134 133 RRAYSPGVQEYVEAATFCK-FCRTGTLLDLEEL 164 (287)
Q Consensus 133 ~~~~s~~lQEyVEA~~f~~-~L~~~~Llt~eev 164 (287)
...+...+.+|+.+..-.. +-.+|.++|+++-
T Consensus 131 ~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eY 163 (303)
T cd00687 131 FNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEY 163 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 3455566778888765443 5667888888874
No 28
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=21.35 E-value=3e+02 Score=23.57 Aligned_cols=37 Identities=8% Similarity=0.233 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhh
Q 023134 215 KICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENAC 258 (287)
Q Consensus 215 ~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~ 258 (287)
.+.+-+++|...+..+ ..|.+++-.+|..|.+.|.+|
T Consensus 113 ~liakceELn~~M~~v-------~~La~qIK~Ik~~lD~lE~~~ 149 (149)
T PF10157_consen 113 TLIAKCEELNESMKPV-------YKLAQQIKDIKKLLDLLESLC 149 (149)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 3444555555555544 477899999999999999876
No 29
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=20.30 E-value=89 Score=26.14 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=36.7
Q ss_pred HhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 023134 192 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 235 (287)
Q Consensus 192 DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk 235 (287)
++..+|++..-+.+..|..+ .+|.+||.+=|..|.++.|+.+
T Consensus 57 ~iA~dmR~~Vr~~i~~G~Sd--~eI~~~~v~RYG~~Vly~Pp~~ 98 (126)
T TIGR03147 57 PIAYDLRHEVYSMVNEGKSN--QQIIDFMTARFGDFVLYNPPFK 98 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEEecCCCC
Confidence 67889999999999999865 4899999999999999988763
No 30
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.09 E-value=4.3e+02 Score=20.63 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=44.1
Q ss_pred hhhHHhhHHHhHHHHHHHH--hhhhcCCchHH----HHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHh
Q 023134 183 VFDYLLGLADLTGELMRLA--IGRISDGELEF----AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIEN 256 (287)
Q Consensus 183 ~~dYLlGL~DLtGELmR~a--in~v~~Gd~~~----~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~ 256 (287)
...|+.|=.+.+.+-.++- +|..+...|.. +..+..+++++-.....| .+..+++|.+-.+|.++|.
T Consensus 8 ~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l-------~~~l~~Id~Ie~~V~~LE~ 80 (99)
T PF10046_consen 8 VSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEEL-------QPYLQQIDQIEEQVTELEQ 80 (99)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3567777667776666654 34444444433 233344444444433333 2447889999999999999
Q ss_pred hhhhh
Q 023134 257 ACLSV 261 (287)
Q Consensus 257 v~Ydl 261 (287)
++|.|
T Consensus 81 ~v~~L 85 (99)
T PF10046_consen 81 TVYEL 85 (99)
T ss_pred HHHHH
Confidence 99865
Done!