Query 023134
Match_columns 287
No_of_seqs 149 out of 414
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 16:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 100.0 5.3E-67 1.8E-71 486.9 24.3 238 45-286 27-286 (290)
2 3axj_B TRAX, translin associat 100.0 1.4E-64 4.7E-69 472.1 22.1 228 45-274 22-284 (298)
3 3axj_A GM27569P, translin; tra 100.0 6.2E-64 2.1E-68 457.3 22.9 222 49-276 16-241 (249)
4 1j1j_A Translin; testis/brain 100.0 1.1E-63 3.7E-68 453.6 22.4 213 50-267 12-230 (240)
5 2qyw_A Vesicle transport throu 69.8 22 0.00074 27.2 7.9 69 48-128 8-76 (102)
6 2kw0_A CCMH protein; oxidoredu 51.4 9.2 0.00031 29.1 2.6 42 192-235 40-81 (90)
7 3hnw_A Uncharacterized protein 46.3 81 0.0028 25.4 7.8 66 183-262 26-95 (138)
8 2hl7_A Cytochrome C-type bioge 44.9 12 0.0004 28.1 2.3 41 192-234 43-83 (84)
9 1gak_A SP18, fertilization pro 42.1 19 0.00065 29.1 3.2 31 67-97 49-79 (141)
10 1is1_A Ribosome recycling fact 37.5 1.7E+02 0.006 24.6 8.8 97 24-120 46-171 (185)
11 1wqg_A Ribosome recycling fact 37.0 1.8E+02 0.0061 24.5 8.8 97 24-120 46-171 (185)
12 1dd5_A Ribosome recycling fact 35.6 1.8E+02 0.006 24.6 8.6 97 24-120 46-171 (185)
13 1ise_A Ribosome recycling fact 35.3 1.8E+02 0.0062 24.5 8.6 97 24-120 46-171 (185)
14 4gfq_A Ribosome-recycling fact 33.5 1.9E+02 0.0066 24.9 8.6 70 24-93 70-156 (209)
15 3lhp_S 4E10_D0_1ISEA_004_N (T9 32.7 1.9E+02 0.0064 23.0 8.2 69 54-122 21-111 (123)
16 3lf9_A 4E10_D0_1IS1A_001_C (T1 30.6 2E+02 0.0069 22.8 8.8 68 55-122 15-101 (121)
17 1eh1_A Ribosome recycling fact 27.3 1.8E+02 0.0062 24.5 7.2 26 68-93 108-133 (185)
18 3g80_A Protein B2; RNA-binding 26.0 1E+02 0.0036 23.2 4.7 47 213-262 34-80 (97)
19 1ge9_A Ribosome recycling fact 24.7 3.1E+02 0.011 23.0 8.7 98 24-121 49-171 (184)
20 3qf7_D MRE11; ABC-ATPase, ATPa 24.6 1E+02 0.0035 20.2 3.9 34 55-88 8-41 (50)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=100.00 E-value=5.3e-67 Score=486.88 Aligned_cols=238 Identities=34% Similarity=0.582 Sum_probs=203.3
Q ss_pred CCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHH
Q 023134 45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRD---NKEEVLKKAEADLEAVKDQYISRLV 121 (287)
Q Consensus 45 ~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~---~~~~~l~~A~~~L~~v~~~~~~~La 121 (287)
+...+++++.++|++|+++||++||+||+|+|+|||||++||++||+||+.. +.++++++|++.|.++++ ++.+|+
T Consensus 27 ~~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdIt~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~-~~~~La 105 (290)
T 3qb5_K 27 KDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQ-KIFQVA 105 (290)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3467789999999999999999999999999999999999999999999643 356899999999999976 799999
Q ss_pred HHhcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCC-----------------CcccChh
Q 023134 122 KELQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIE-----------------PLQINVF 184 (287)
Q Consensus 122 ~~L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~-----------------~~~V~~~ 184 (287)
++|++.++|+|+++|++|+||||||++|++||++|+|+|++|+++.|......+.. .|+|+++
T Consensus 106 ~~l~~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~e 185 (290)
T 3qb5_K 106 QELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRVTPV 185 (290)
T ss_dssp HHHSSSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------CEECCCCHH
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccccceecCCHH
Confidence 99999999999999999999999999999999999999999999877533222111 3899999
Q ss_pred hHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCC-cchhhHHHHHHHHHHHHhhhhhhee
Q 023134 185 DYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNS-DMKTKMDTMLQSVLKIENACLSVHV 263 (287)
Q Consensus 185 dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~-~LRkK~D~lk~slkKiE~v~Ydl~v 263 (287)
|||+||+||||||||||||+|+.||++.|++||+||++||++|++| +++ |+ +||||+|+|||||+|||++|||++|
T Consensus 186 DYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--~~~-~~~~LrKK~d~lk~svkKvE~v~Ydl~v 262 (290)
T 3qb5_K 186 DYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFI--GNT-GPYEVSKKLYTLKQSLAKVENACYALKV 262 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH--GGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhc--CCC-CChhhhHHHHHHHHHHHHHHHHhhheee
Confidence 9999999999999999999999999999999999999999999999 445 55 9999999999999999999999999
Q ss_pred eccccccCCCCCc-ccccCCCCCC
Q 023134 264 RGSEYTLLGSSDP-SFLMGVPDMQ 286 (287)
Q Consensus 264 Rg~e~~~~~~~~~-~~~~~~~~~~ 286 (287)
||+|+|+|+..|- +.-.++.|++
T Consensus 263 Rg~e~pk~~~~d~~~~~~~~~~~~ 286 (290)
T 3qb5_K 263 RGSEIPKHMLADVFSVKTEMIDQE 286 (290)
T ss_dssp HTTCCCCCCC--------------
T ss_pred ecCCCCcccchhhhcCCCCCCccc
Confidence 9999999887765 5545555543
No 2
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=100.00 E-value=1.4e-64 Score=472.11 Aligned_cols=228 Identities=33% Similarity=0.543 Sum_probs=207.1
Q ss_pred CCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHHHHHHH
Q 023134 45 RTITTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSR----DNKEEVLKKAEADLEAVKDQYISRL 120 (287)
Q Consensus 45 ~~~~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~----~~~~~~l~~A~~~L~~v~~~~~~~L 120 (287)
.++++++++.++|++|+++||++||+||+|+|+|||||+.||++||.||+. .+.+++|++|++.|.++++++++.|
T Consensus 22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdIt~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~~~l 101 (298)
T 3axj_B 22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDITIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNFRAV 101 (298)
T ss_dssp -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999964 3456799999999999988788999
Q ss_pred HHHhcCCChhhhhhhcchhHHHHHHHHHHHHHHh---c------CCCCCHHHHhhccCCCCC------------------
Q 023134 121 VKELQGTDFWKLRRAYSPGVQEYVEAATFCKFCR---T------GTLLDLEELNAGLLPLSD------------------ 173 (287)
Q Consensus 121 a~~L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~---~------~~Llt~eev~~~l~~l~~------------------ 173 (287)
++++++.++|+|+++|++|+||||||++|++||+ + |+|+|++||++.|.....
T Consensus 102 a~~l~~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~~~~d~ 181 (298)
T 3axj_B 102 ALELRDQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGEDVQAIA 181 (298)
T ss_dssp HHHTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC----------------
T ss_pred HHHcCccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHhccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999 8 999999999987742111
Q ss_pred ----CCCCCcccChhhHHhhHHHhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHH
Q 023134 174 ----PAIEPLQINVFDYLLGLADLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQ 249 (287)
Q Consensus 174 ----~~~~~~~V~~~dYLlGL~DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~ 249 (287)
+....|+|+++|||+||+||||||||||||+|+.||++.|++||+||++||.+|++| +++.+++||||+|+|||
T Consensus 182 ~~~~~~~~~f~v~~edYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L--nlkn~~~LRKK~D~lk~ 259 (298)
T 3axj_B 182 QVESPKKFQFFVDPTEYILGLSDLTGELMRRCINSLGSGDTDTCLDTCKALQHFYSGYISL--NCQRARELWRKITTMKQ 259 (298)
T ss_dssp ----CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTC--CCTTCHHHHHHHHHHHH
T ss_pred ccccccccccCCCHHHHHHHHHHHHhHHHHHHHHHHhccchHhHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHH
Confidence 111268999999999999999999999999999999999999999999999999999 56623899999999999
Q ss_pred HHHHHHhhhhhheeeccccccCCCC
Q 023134 250 SVLKIENACLSVHVRGSEYTLLGSS 274 (287)
Q Consensus 250 slkKiE~v~Ydl~vRg~e~~~~~~~ 274 (287)
+|+|||++|||++|||+|+|.|++.
T Consensus 260 svkKvE~v~Ydl~vRg~e~~~~~~~ 284 (298)
T 3axj_B 260 SVLKAENVCYNVKVRGGEAAKWGAT 284 (298)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHTC--
T ss_pred HHHHHHHHHHHheecCCCccccccc
Confidence 9999999999999999999998854
No 3
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=100.00 E-value=6.2e-64 Score=457.28 Aligned_cols=222 Identities=22% Similarity=0.317 Sum_probs=201.5
Q ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023134 49 TESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRD----NKEEVLKKAEADLEAVKDQYISRLVKEL 124 (287)
Q Consensus 49 ~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~----~~~~~l~~A~~~L~~v~~~~~~~La~~L 124 (287)
+++++.++|+.|+++||++||+||+|+|+|||||+.||++||.+|+.. +.++++++|++.|+++++ .+++|++++
T Consensus 16 ~~~~i~~iF~~~~~~Ld~~~d~REriik~sRdIt~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~-~~~~L~~~l 94 (249)
T 3axj_A 16 SNFVNLDIFSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQ-KYQKLAELV 94 (249)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHH-HHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 346889999999999999999999999999999999999999999643 356789999999999988 689999999
Q ss_pred cCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhhh
Q 023134 125 QGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIGR 204 (287)
Q Consensus 125 ~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain~ 204 (287)
++.++|+|++.|++|+||||||++|++||++|+|+|++|+++.|. ++.....+|+|+++|||+||+||||||||||||+
T Consensus 95 ~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~-~~~~~~~~f~v~~edYLlGL~DLtGEL~R~ain~ 173 (249)
T 3axj_A 95 PAGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLG-LKISQSEGFHLDVEDYLLGILQLASELSRFATNS 173 (249)
T ss_dssp CTTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHT-CBSSTTTSSBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhc-cccCCCcccccCHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999998874 4444456799999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccccccCCCCCc
Q 023134 205 ISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSEYTLLGSSDP 276 (287)
Q Consensus 205 v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e~~~~~~~~~ 276 (287)
|+.||++.|++|++||++||.+|+.| +++ |++||||+|++||+|+|||++|||++|||+ .|..++++|
T Consensus 174 v~~Gd~~~~~~i~~fm~~Ly~~f~~L--n~~-n~~LRkK~D~lk~sv~KvE~v~Ydl~vRg~-~~~~~~~~~ 241 (249)
T 3axj_A 174 VTMGDYERPLNISHFIGDLNTGFRLL--NLK-NDGLRKRFDALKYDVKKIEEVVYDVSIRGL-SSKEKDQQE 241 (249)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHHT--CCC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCC------
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHhc--CCC-CccHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCccccCC
Confidence 99999999999999999999999999 555 799999999999999999999999999999 788888877
No 4
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=100.00 E-value=1.1e-63 Score=453.56 Aligned_cols=213 Identities=19% Similarity=0.346 Sum_probs=199.3
Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023134 50 ESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRD------NKEEVLKKAEADLEAVKDQYISRLVKE 123 (287)
Q Consensus 50 ~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~------~~~~~l~~A~~~L~~v~~~~~~~La~~ 123 (287)
++++.++|++|+++||++||+||+|+|+|||||+.||++||.+|+.. +.++++++|++.|+++.+ .+++|+++
T Consensus 12 ~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~-~~~~L~~~ 90 (240)
T 1j1j_A 12 SMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKT-HLTSLKTK 90 (240)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 47899999999999999999999999999999999999999999643 356789999999999987 68999999
Q ss_pred hcCCChhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCHHHHhhccCCCCCCCCCCcccChhhHHhhHHHhHHHHHHHHhh
Q 023134 124 LQGTDFWKLRRAYSPGVQEYVEAATFCKFCRTGTLLDLEELNAGLLPLSDPAIEPLQINVFDYLLGLADLTGELMRLAIG 203 (287)
Q Consensus 124 L~~~~~~ry~~~~s~~lQEyVEA~~f~~~L~~~~Llt~eev~~~l~~l~~~~~~~~~V~~~dYLlGL~DLtGELmR~ain 203 (287)
+++.++|+|++.|++|+||||||++|++||++|+|+|++|+++.| +++.+...+|+|+++|||+||+||||||||||||
T Consensus 91 l~~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L-~~~~~~~~~f~v~~edYLlGL~DltGEL~R~avn 169 (240)
T 1j1j_A 91 FPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEIL-GIEPDREKGFHLDVEDYLSGVLILASELSRLSVN 169 (240)
T ss_dssp SCGGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH-TCCCSSSSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHh-CCCccccccCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887 4555666789999999999999999999999999
Q ss_pred hhcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhheeeccc
Q 023134 204 RISDGELEFAEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVHVRGSE 267 (287)
Q Consensus 204 ~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~vRg~e 267 (287)
+|+.||++.|++|++||++||.+|++| +++ |++||||+|++||+|+|||++|||++|||++
T Consensus 170 ~v~~Gd~~~~~~i~~fm~~Ly~~f~~L--nl~-n~~LRkK~D~lk~~vkKvE~v~Ydl~vRg~~ 230 (240)
T 1j1j_A 170 SVTAGDYSRPLHISTFINELDSGFRLL--NLK-NDSLRKRYDGLKYDVKKVEEVVYDLSIRGFN 230 (240)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHTTC--CCC-CHHHHHHHTTHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHhcCChHhHHHHHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHHHHHHHHHHHheecCCC
Confidence 999999999999999999999999999 555 7999999999999999999999999999995
No 5
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=69.77 E-value=22 Score=27.20 Aligned_cols=69 Identities=9% Similarity=0.232 Sum_probs=40.8
Q ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 023134 48 TTESYMKDAFANYAGYLNELNEKRERVVKSSRDITINSKKVIFQVHSRDNKEEVLKKAEADLEAVKDQYISRLVKELQGT 127 (287)
Q Consensus 48 ~~~~~~~~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~If~lH~~~~~~~~l~~A~~~L~~v~~~~~~~La~~L~~~ 127 (287)
+...++.++|+.|.+++... +.+|++.+.++ ...-.++.+...+.+++..|.++.+ ++.++--++.+.
T Consensus 8 ~~~~~mSelFe~YE~df~~l----------~~~i~~kl~~i-~~~~~~e~rk~~i~~ie~~ldEA~e-Ll~qMelE~r~~ 75 (102)
T 2qyw_A 8 AASAASSEHFEKLHEIFRGL----------LEDLQGVPERL-LGTAGTEEKKKLVRDFDEKQQEANE-TLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH-HTCCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTS
T ss_pred cCcccHHHHHHHHHHHHHHH----------HHHHHHHHHHh-cccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhC
Confidence 33445568999998877654 33444433332 1111223344567778888888776 677777777665
Q ss_pred C
Q 023134 128 D 128 (287)
Q Consensus 128 ~ 128 (287)
+
T Consensus 76 p 76 (102)
T 2qyw_A 76 P 76 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 6
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=51.40 E-value=9.2 Score=29.05 Aligned_cols=42 Identities=12% Similarity=0.240 Sum_probs=37.5
Q ss_pred HhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCCC
Q 023134 192 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLMD 235 (287)
Q Consensus 192 DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~lk 235 (287)
+++.+|++..-..|..|+.+ .+|.+||-+=|..|.++.|+++
T Consensus 40 ~iA~dlR~~Vre~l~~G~Sd--~eI~~~mv~RYGdfVly~Pp~~ 81 (90)
T 2kw0_A 40 MIATDLRQKVYELMQEGKSK--KEIVDYMVARYGNFVTYDPPLT 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHTTTCBCSCCSC
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeEEeeCCCC
Confidence 78899999999999999865 5899999999999999988874
No 7
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.32 E-value=81 Score=25.38 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=42.0
Q ss_pred hhhHHhhHHHhHHHHHHHHhhh--hcCCchHHH--HHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhh
Q 023134 183 VFDYLLGLADLTGELMRLAIGR--ISDGELEFA--EKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENAC 258 (287)
Q Consensus 183 ~~dYLlGL~DLtGELmR~ain~--v~~Gd~~~~--~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~ 258 (287)
.++||..++..+.+=||-.-.. -..-+.++. ...+++..+++ .++++.+.++..++..++-.
T Consensus 26 ~ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~--------------k~~~~~~~L~~~l~~~~kE~ 91 (138)
T 3hnw_A 26 SEEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYF--------------KAKKMADSLSLDIENKDKEI 91 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999988743 333232222 22334444443 23666777777777777777
Q ss_pred hhhe
Q 023134 259 LSVH 262 (287)
Q Consensus 259 Ydl~ 262 (287)
|+++
T Consensus 92 ~~lK 95 (138)
T 3hnw_A 92 YDLK 95 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 8
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=44.89 E-value=12 Score=28.06 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=35.6
Q ss_pred HhHHHHHHHHhhhhcCCchHHHHHHHHHHHHHHHHHhhhcCCC
Q 023134 192 DLTGELMRLAIGRISDGELEFAEKICRFSRDIYRELTLVVPLM 234 (287)
Q Consensus 192 DLtGELmR~ain~v~~Gd~~~~~~i~~fm~~Iy~~f~~L~~~l 234 (287)
+++.+|++..-..+..|+-+ .+|.+||-+=|..|.++.|++
T Consensus 43 ~iA~dlR~~V~~~l~~G~sd--~eI~~~~v~RYG~fVly~Pp~ 83 (84)
T 2hl7_A 43 PIAADLRKQIYGQLQQGKSD--GEIVDYMVARYGDFVRYKPPV 83 (84)
T ss_dssp HHHHHHHHHHHHHHHHTCCH--HHHHHHHHHHHTTTCEECCC-
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHhcCCeeeeeCCC
Confidence 78889999999999999865 589999999999999987764
No 9
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=42.09 E-value=19 Score=29.05 Aligned_cols=31 Identities=29% Similarity=0.284 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 023134 67 LNEKRERVVKSSRDITINSKKVIFQVHSRDN 97 (287)
Q Consensus 67 ~~d~REriik~SRdIt~~SKk~If~lH~~~~ 97 (287)
+-=.|||+++.+++-++.||++|..=|..-|
T Consensus 49 ~y~nreRlm~~C~~y~~~Skkii~L~~~~lN 79 (141)
T 1gak_A 49 KKVNRERMMRYCMDYARYSKKILQLKHLPVN 79 (141)
T ss_dssp HHHHHHHHHHBHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 3446999999999999999999998886654
No 10
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=37.53 E-value=1.7e+02 Score=24.62 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=55.7
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITINSK 86 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~-L----------------d~~~d~REriik~SRdIt~~SK 86 (287)
..+.|+.|++.-.+..+.--.=+.+..+.+..+-..|++. | .--.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1is1_A 46 GAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGR 125 (185)
T ss_dssp TEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467777765544443211111122345666666666653 1 1124899999999999999999
Q ss_pred HHHHHHhcCC------------chHHHHHHHHHHHHHHHHHHHHHH
Q 023134 87 KVIFQVHSRD------------NKEEVLKKAEADLEAVKDQYISRL 120 (287)
Q Consensus 87 k~If~lH~~~------------~~~~~l~~A~~~L~~v~~~~~~~L 120 (287)
-.|+.+.+.- -.+.....+++.++++.+++++.+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1is1_A 126 VAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKI 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 8888775211 012234556666666666554444
No 11
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=37.04 E-value=1.8e+02 Score=24.54 Aligned_cols=97 Identities=15% Similarity=0.229 Sum_probs=55.8
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITINSK 86 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~-L----------------d~~~d~REriik~SRdIt~~SK 86 (287)
..+.|+.|++.-.+..+.--.=+.+..+.+..+-..|++. | .--.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1wqg_A 46 GAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAK 125 (185)
T ss_dssp TEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHHHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467777765544443211111122345666666666653 1 1124899999999999999999
Q ss_pred HHHHHHhcCC------------chHHHHHHHHHHHHHHHHHHHHHH
Q 023134 87 KVIFQVHSRD------------NKEEVLKKAEADLEAVKDQYISRL 120 (287)
Q Consensus 87 k~If~lH~~~------------~~~~~l~~A~~~L~~v~~~~~~~L 120 (287)
-+|+.+.+.- -.+.....+++.++++.+++++.+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1wqg_A 126 VSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQI 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 8888775211 012234456666666666554444
No 12
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=35.64 E-value=1.8e+02 Score=24.60 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=54.7
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITINSK 86 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~-L----------------d~~~d~REriik~SRdIt~~SK 86 (287)
..+.|+.|++.-.+..+.--.=+.+..+.+..+-..|++. | .--.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1dd5_A 46 GVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGK 125 (185)
T ss_dssp TEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHHHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467777765543333111111112345566666666653 0 1124899999999999999999
Q ss_pred HHHHHHhcCC------------chHHHHHHHHHHHHHHHHHHHHHH
Q 023134 87 KVIFQVHSRD------------NKEEVLKKAEADLEAVKDQYISRL 120 (287)
Q Consensus 87 k~If~lH~~~------------~~~~~l~~A~~~L~~v~~~~~~~L 120 (287)
-.|+.+.+.- -.+.....+++.++++.+++++.+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1dd5_A 126 IAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKL 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 8888775211 011234456666666655554444
No 13
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=35.34 E-value=1.8e+02 Score=24.53 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=54.7
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHH-H----------------hhHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGY-L----------------NELNEKRERVVKSSRDITINSK 86 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~-L----------------d~~~d~REriik~SRdIt~~SK 86 (287)
..+.|+.|++.-.+..+.--.=+.+..+.+..+-..|++. | .--.++|++++|.++...-.+|
T Consensus 46 G~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aK 125 (185)
T 1ise_A 46 GTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQAR 125 (185)
T ss_dssp TEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHHHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467777765544433211111122345566666666653 1 1124899999999999999999
Q ss_pred HHHHHHhcCC------------chHHHHHHHHHHHHHHHHHHHHHH
Q 023134 87 KVIFQVHSRD------------NKEEVLKKAEADLEAVKDQYISRL 120 (287)
Q Consensus 87 k~If~lH~~~------------~~~~~l~~A~~~L~~v~~~~~~~L 120 (287)
-.|+.+.+.- -.+.....+++.++++.+++++.+
T Consensus 126 vaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~i 171 (185)
T 1ise_A 126 VAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKI 171 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 8888775211 012234456666666655554444
No 14
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=33.47 E-value=1.9e+02 Score=24.92 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=43.9
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYL-----------------NELNEKRERVVKSSRDITINSK 86 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~L-----------------d~~~d~REriik~SRdIt~~SK 86 (287)
..++|+.|++.-.++.+.--.=+.+..+.+..+-..|++.= .--.++|++++|.++...-.+|
T Consensus 70 G~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aK 149 (209)
T 4gfq_A 70 GAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAK 149 (209)
T ss_dssp SCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHHHHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHHHHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHH
Confidence 45677777655444332211122234566666666666531 1124899999999999999999
Q ss_pred HHHHHHh
Q 023134 87 KVIFQVH 93 (287)
Q Consensus 87 k~If~lH 93 (287)
-+|+.+-
T Consensus 150 vaIRniR 156 (209)
T 4gfq_A 150 VAVRNVR 156 (209)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888775
No 15
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=32.73 E-value=1.9e+02 Score=23.03 Aligned_cols=69 Identities=14% Similarity=0.183 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------------hHHHHHHHHHHHHH
Q 023134 54 KDAFANYAGYLNEL----------NEKRERVVKSSRDITINSKKVIFQVHSRDN------------KEEVLKKAEADLEA 111 (287)
Q Consensus 54 ~~~F~~~~~~Ld~~----------~d~REriik~SRdIt~~SKk~If~lH~~~~------------~~~~l~~A~~~L~~ 111 (287)
....+.+.+.+|.. .++|..++|.++...-.+|-+|..+.+..+ .+.....+++.+++
T Consensus 21 ~~~~~~~~n~~~~~~~~IRl~iPTEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQK 100 (123)
T 3lhp_S 21 DKAVEAFKNKLDKFKAAVRKVFPTEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQK 100 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence 34455566666554 478999999999999999988887763110 11134556666666
Q ss_pred HHHHHHHHHHH
Q 023134 112 VKDQYISRLVK 122 (287)
Q Consensus 112 v~~~~~~~La~ 122 (287)
+.+.++..+-+
T Consensus 101 LTDkyIkkID~ 111 (123)
T 3lhp_S 101 LTDAAIKKIEA 111 (123)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66655554433
No 16
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=30.56 E-value=2e+02 Score=22.76 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------chHHHHHHHHHHHHHHHHH
Q 023134 55 DAFANYAGYLNEL-------NEKRERVVKSSRDITINSKKVIFQVHSRD------------NKEEVLKKAEADLEAVKDQ 115 (287)
Q Consensus 55 ~~F~~~~~~Ld~~-------~d~REriik~SRdIt~~SKk~If~lH~~~------------~~~~~l~~A~~~L~~v~~~ 115 (287)
.-.+.|...|..- .++|..++|.++...-.+|-+|+.+-+.. -.+.....++..++++.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDk 94 (121)
T 3lf9_A 15 KSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDV 94 (121)
T ss_dssp HHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHH
Confidence 3455566666543 58899999999999988988888765211 1122355566666666665
Q ss_pred HHHHHHH
Q 023134 116 YISRLVK 122 (287)
Q Consensus 116 ~~~~La~ 122 (287)
++..+-+
T Consensus 95 yIkkID~ 101 (121)
T 3lf9_A 95 AVKKIDE 101 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 17
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=27.26 E-value=1.8e+02 Score=24.53 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023134 68 NEKRERVVKSSRDITINSKKVIFQVH 93 (287)
Q Consensus 68 ~d~REriik~SRdIt~~SKk~If~lH 93 (287)
.++|++++|.++...-.+|-.|+.+.
T Consensus 108 eErRkelvK~~k~~~E~aKvaiRniR 133 (185)
T 1eh1_A 108 EERRKDLVRAVRQYAEEGRVAIRNIR 133 (185)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999998888775
No 18
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=25.97 E-value=1e+02 Score=23.19 Aligned_cols=47 Identities=2% Similarity=0.178 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHhhhhhhe
Q 023134 213 AEKICRFSRDIYRELTLVVPLMDNNSDMKTKMDTMLQSVLKIENACLSVH 262 (287)
Q Consensus 213 ~~~i~~fm~~Iy~~f~~L~~~lk~n~~LRkK~D~lk~slkKiE~v~Ydl~ 262 (287)
|.++.+..+..-.....+ ... ....+|-+|.++..|.|.|..||..+
T Consensus 34 P~~l~qv~q~~v~ai~sl--~~q-DpnV~kDLdn~~acL~k~~~t~~rat 80 (97)
T 3g80_A 34 PAKLEQLAQETQATIQTL--MIA-DPNVNKDLRAFCEFLTVQHQRAYRAT 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHTC--CCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc--ccc-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666 232 35789999999999999999999754
No 19
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=24.74 E-value=3.1e+02 Score=23.02 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=58.7
Q ss_pred CccccccccccccccccccCCCCCCCcchHHHHHHHHHHHHh----------------hHHHHHHHHHHHHHHHHHHHHH
Q 023134 24 SKTHRLHQLSGTALQSIAKRPRTITTESYMKDAFANYAGYLN----------------ELNEKRERVVKSSRDITINSKK 87 (287)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~Ld----------------~~~d~REriik~SRdIt~~SKk 87 (287)
..+.|+.|++.-++..+.--.=+.+..+.+..+-..+++.|. --.++|++++|.++.....+|-
T Consensus 49 G~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI~~dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKv 128 (184)
T 1ge9_A 49 GSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARV 128 (184)
T ss_dssp SCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHHHHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHHHhCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 446777776554444321111122335667777777777331 1248999999999999999998
Q ss_pred HHHHHhcCC---------chHHHHHHHHHHHHHHHHHHHHHHH
Q 023134 88 VIFQVHSRD---------NKEEVLKKAEADLEAVKDQYISRLV 121 (287)
Q Consensus 88 ~If~lH~~~---------~~~~~l~~A~~~L~~v~~~~~~~La 121 (287)
.|+.+.+.- -.+.....+++.++++.+++++.+-
T Consensus 129 aiRniRrda~~~lKk~~kiseD~~k~~e~~iQkltd~~i~~id 171 (184)
T 1ge9_A 129 RVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEIN 171 (184)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 888775211 0123345566666666665555443
No 20
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=24.60 E-value=1e+02 Score=20.19 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023134 55 DAFANYAGYLNELNEKRERVVKSSRDITINSKKV 88 (287)
Q Consensus 55 ~~F~~~~~~Ld~~~d~REriik~SRdIt~~SKk~ 88 (287)
+-|+-|++++....+-.|.++|+-.++....|+.
T Consensus 8 d~felfkey~k~r~~~he~l~k~~~ell~evkks 41 (50)
T 3qf7_D 8 DYFELFKEYLKKREENHEKLLKILDELLDEVKKS 41 (50)
T ss_dssp CHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4588889999998888999999998887776664
Done!