Query 023135
Match_columns 287
No_of_seqs 263 out of 1700
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2804 Phosphorylcholine tran 100.0 1.8E-82 3.9E-87 591.1 23.5 240 16-262 58-297 (348)
2 PLN02413 choline-phosphate cyt 100.0 1E-78 2.2E-83 565.1 30.0 256 11-266 17-276 (294)
3 cd02174 CCT CTP:phosphocholine 100.0 4.5E-42 9.7E-47 294.3 17.5 150 20-171 1-150 (150)
4 cd02173 ECT CTP:phosphoethanol 100.0 2.9E-39 6.3E-44 277.3 17.2 148 22-171 3-152 (152)
5 PLN02406 ethanolamine-phosphat 100.0 8.6E-40 1.9E-44 319.0 15.7 168 4-175 236-406 (418)
6 PTZ00308 ethanolamine-phosphat 100.0 4E-38 8.7E-43 302.3 16.8 167 4-174 177-345 (353)
7 KOG2803 Choline phosphate cyti 100.0 1.1E-38 2.4E-43 299.3 11.5 139 16-158 3-141 (358)
8 COG0615 TagD Cytidylyltransfer 100.0 2.2E-35 4.7E-40 251.0 12.0 132 21-158 1-139 (140)
9 PLN02406 ethanolamine-phosphat 100.0 6.1E-34 1.3E-38 278.0 15.8 138 17-158 49-190 (418)
10 PTZ00308 ethanolamine-phosphat 100.0 1.5E-32 3.2E-37 263.9 16.2 144 14-161 4-147 (353)
11 KOG2803 Choline phosphate cyti 100.0 4.7E-31 1E-35 248.0 11.8 168 4-178 183-352 (358)
12 cd02172 RfaE_N N-terminal doma 99.9 2.8E-26 6E-31 194.7 15.4 136 22-161 5-144 (144)
13 TIGR02199 rfaE_dom_II rfaE bif 99.9 1.1E-25 2.3E-30 190.9 14.6 130 22-158 12-144 (144)
14 cd02170 cytidylyltransferase c 99.9 1.7E-25 3.6E-30 185.9 15.2 133 21-158 1-135 (136)
15 TIGR01518 g3p_cytidyltrns glyc 99.9 2.7E-25 5.8E-30 183.2 12.8 123 24-156 1-125 (125)
16 cd02171 G3P_Cytidylyltransfera 99.9 7.1E-24 1.5E-28 174.7 14.5 128 21-158 1-128 (129)
17 PRK11316 bifunctional heptose 99.9 1.7E-23 3.8E-28 204.4 14.5 130 22-157 341-472 (473)
18 COG2870 RfaE ADP-heptose synth 99.9 7.1E-23 1.5E-27 198.7 11.9 130 22-158 333-465 (467)
19 PRK00777 phosphopantetheine ad 99.8 2.9E-19 6.3E-24 153.8 12.4 129 22-160 2-146 (153)
20 PRK00168 coaD phosphopantethei 99.7 2.9E-17 6.2E-22 141.3 12.9 128 21-159 1-138 (159)
21 PRK01170 phosphopantetheine ad 99.7 6.1E-17 1.3E-21 154.5 11.3 126 23-158 2-141 (322)
22 TIGR01527 arch_NMN_Atrans nico 99.7 2.4E-16 5.1E-21 137.6 13.2 122 23-159 1-136 (165)
23 PF01467 CTP_transf_2: Cytidyl 99.7 3E-17 6.5E-22 134.2 6.5 126 25-155 1-157 (157)
24 cd02039 cytidylyltransferase_l 99.7 5.9E-16 1.3E-20 126.1 10.2 128 23-155 1-143 (143)
25 cd02163 PPAT Phosphopantethein 99.6 2.5E-15 5.5E-20 128.5 11.4 126 23-159 1-136 (153)
26 cd02064 FAD_synthetase_N FAD s 99.6 7.6E-15 1.6E-19 128.3 12.3 135 24-160 2-159 (180)
27 TIGR01510 coaD_prev_kdtB pante 99.6 2.6E-14 5.7E-19 122.4 12.7 126 23-159 1-136 (155)
28 PRK13964 coaD phosphopantethei 99.6 3.9E-14 8.4E-19 120.9 12.1 90 21-117 1-92 (140)
29 COG0669 CoaD Phosphopantethein 99.6 1.1E-14 2.4E-19 126.3 8.8 91 21-118 2-93 (159)
30 TIGR00125 cyt_tran_rel cytidyl 99.6 9.4E-15 2E-19 106.6 7.0 65 23-89 1-65 (66)
31 cd02166 NMNAT_Archaea Nicotina 99.6 3.8E-14 8.2E-19 122.7 11.4 119 23-157 1-136 (163)
32 PRK05627 bifunctional riboflav 99.5 5.4E-13 1.2E-17 126.4 14.6 144 23-170 15-184 (305)
33 cd02164 PPAT_CoAS phosphopante 99.5 1.9E-13 4E-18 116.8 8.3 123 23-154 1-142 (143)
34 COG1019 Predicted nucleotidylt 99.4 1.8E-12 3.9E-17 112.1 9.0 126 19-154 3-144 (158)
35 PRK07143 hypothetical protein; 99.4 1.9E-11 4.2E-16 114.8 16.2 157 6-170 2-173 (279)
36 PRK01153 nicotinamide-nucleoti 99.3 1.1E-11 2.4E-16 108.8 12.1 122 23-158 2-138 (174)
37 cd02168 NMNAT_Nudix Nicotinami 99.3 3.2E-12 7E-17 112.9 8.3 123 24-158 2-144 (181)
38 PRK05379 bifunctional nicotina 99.3 9.2E-12 2E-16 119.2 11.2 128 20-158 5-149 (340)
39 PLN02388 phosphopantetheine ad 99.3 1.5E-11 3.3E-16 108.8 11.6 130 22-160 20-168 (177)
40 cd02165 NMNAT Nicotinamide/nic 99.3 5.9E-11 1.3E-15 104.2 12.4 94 23-119 1-107 (192)
41 cd02167 NMNAT_NadR Nicotinamid 99.3 6.6E-11 1.4E-15 102.2 11.9 127 24-161 2-151 (158)
42 PRK00071 nadD nicotinic acid m 99.2 1.4E-10 2.9E-15 103.0 13.6 97 20-119 3-113 (203)
43 PRK13671 hypothetical protein; 99.2 1.8E-10 3.8E-15 109.4 11.3 88 26-117 5-103 (298)
44 PRK07152 nadD putative nicotin 99.1 1.1E-09 2.4E-14 104.7 15.6 134 21-159 1-168 (342)
45 PRK08887 nicotinic acid mononu 99.1 6.3E-10 1.4E-14 97.4 12.2 127 22-157 3-147 (174)
46 cd02156 nt_trans nucleotidyl t 99.1 4E-11 8.8E-16 95.8 4.0 57 24-84 2-58 (105)
47 TIGR00482 nicotinate (nicotina 99.1 7.6E-10 1.6E-14 97.7 12.5 92 25-119 1-106 (193)
48 COG1057 NadD Nicotinic acid mo 99.1 1.2E-09 2.7E-14 98.1 12.7 134 20-158 2-173 (197)
49 PRK06973 nicotinic acid mononu 99.1 2.8E-09 6E-14 98.4 13.6 100 16-119 16-134 (243)
50 TIGR01526 nadR_NMN_Atrans nico 99.0 1.3E-09 2.8E-14 103.9 10.4 65 21-89 1-66 (325)
51 PRK08099 bifunctional DNA-bind 99.0 2.5E-09 5.3E-14 104.9 12.4 131 20-161 51-208 (399)
52 cd02169 Citrate_lyase_ligase C 99.0 4.9E-09 1.1E-13 99.3 13.2 129 21-158 114-279 (297)
53 TIGR00124 cit_ly_ligase [citra 99.0 2E-09 4.4E-14 103.3 10.6 123 22-157 140-307 (332)
54 smart00764 Citrate_ly_lig Citr 99.0 8.9E-09 1.9E-13 91.2 12.6 122 28-158 6-164 (182)
55 PRK13793 nicotinamide-nucleoti 99.0 1.6E-09 3.4E-14 97.5 7.4 59 22-84 5-63 (196)
56 cd09286 NMNAT_Eukarya Nicotina 98.8 4.8E-08 1E-12 89.0 10.7 65 23-91 2-73 (225)
57 PF05636 HIGH_NTase1: HIGH Nuc 98.7 1.3E-08 2.8E-13 99.8 5.1 90 23-116 3-103 (388)
58 COG1056 NadR Nicotinamide mono 98.6 7.1E-08 1.5E-12 85.3 6.4 61 20-84 2-62 (172)
59 PRK13670 hypothetical protein; 98.6 2E-07 4.3E-12 91.4 10.0 92 22-116 2-103 (388)
60 KOG3351 Predicted nucleotidylt 98.6 1.1E-07 2.5E-12 88.3 6.9 100 16-119 137-244 (293)
61 TIGR00083 ribF riboflavin kina 98.5 2.5E-07 5.5E-12 87.4 8.0 133 24-158 1-155 (288)
62 PF06574 FAD_syn: FAD syntheta 98.4 4E-07 8.7E-12 78.8 6.4 128 22-150 6-156 (157)
63 COG0196 RibF FAD synthase [Coe 98.4 2.2E-06 4.9E-11 81.8 11.4 149 21-173 15-187 (304)
64 COG1323 Predicted nucleotidylt 98.3 1.9E-06 4E-11 84.0 7.8 88 26-117 6-104 (358)
65 PF08218 Citrate_ly_lig: Citra 98.3 3.2E-06 6.8E-11 75.4 8.6 122 28-158 6-164 (182)
66 PLN02945 nicotinamide-nucleoti 98.0 9.5E-06 2E-10 74.3 6.7 77 10-86 11-89 (236)
67 COG3053 CitC Citrate lyase syn 96.9 0.0086 1.9E-07 57.7 10.1 64 20-92 144-208 (352)
68 TIGR00018 panC pantoate--beta- 96.3 0.0087 1.9E-07 56.9 6.5 66 23-94 26-94 (282)
69 PLN02660 pantoate--beta-alanin 96.1 0.016 3.4E-07 55.3 6.7 66 23-94 25-93 (284)
70 PRK00380 panC pantoate--beta-a 95.9 0.012 2.6E-07 55.8 5.1 62 29-93 29-93 (281)
71 cd00560 PanC Pantoate-beta-ala 95.3 0.033 7.1E-07 52.9 5.6 64 23-92 26-92 (277)
72 KOG3199 Nicotinamide mononucle 94.7 0.071 1.5E-06 49.2 5.8 87 19-106 6-102 (234)
73 PRK13477 bifunctional pantoate 93.0 0.17 3.7E-06 51.9 5.7 64 26-93 24-91 (512)
74 PF02569 Pantoate_ligase: Pant 92.6 0.22 4.7E-06 47.6 5.3 62 29-93 29-93 (280)
75 TIGR00339 sopT ATP sulphurylas 91.3 0.6 1.3E-05 46.3 7.0 90 23-117 185-289 (383)
76 COG0414 PanC Panthothenate syn 86.3 0.72 1.6E-05 44.1 3.4 37 23-62 24-60 (285)
77 PF14812 PBP1_TM: Transmembran 79.0 0.62 1.3E-05 36.9 0.0 15 271-285 37-51 (81)
78 PF05086 Dicty_REP: Dictyostel 76.4 8.8 0.00019 41.6 7.4 35 219-255 851-885 (911)
79 KOG3042 Panthothenate syntheta 72.8 3.5 7.5E-05 38.7 3.1 39 21-62 24-62 (283)
80 PLN02341 pfkB-type carbohydrat 68.4 1.3 2.9E-05 44.5 -0.7 26 22-47 415-440 (470)
81 PLN02413 choline-phosphate cyt 59.7 99 0.0021 30.1 10.2 49 209-260 226-274 (294)
82 PF04871 Uso1_p115_C: Uso1 / p 58.2 1.2E+02 0.0026 25.9 11.4 14 225-238 82-95 (136)
83 COG2882 FliJ Flagellar biosynt 55.7 1.4E+02 0.003 26.2 9.6 69 150-227 36-107 (148)
84 PRK10992 iron-sulfur cluster r 52.8 8.8 0.00019 35.2 1.9 81 87-170 8-93 (220)
85 COG1433 Uncharacterized conser 51.5 50 0.0011 27.9 6.1 48 99-157 57-105 (121)
86 PF02579 Nitro_FeMo-Co: Dinitr 51.5 60 0.0013 24.4 6.1 48 99-157 45-93 (94)
87 PRK14536 cysS cysteinyl-tRNA s 50.1 12 0.00025 38.5 2.4 31 18-48 20-58 (490)
88 TIGR02026 BchE magnesium-proto 50.0 2.2E+02 0.0048 28.9 11.5 132 24-163 274-427 (497)
89 TIGR03471 HpnJ hopanoid biosyn 45.5 2.8E+02 0.0061 27.7 11.3 119 39-164 288-433 (472)
90 KOG2398 Predicted proline-seri 43.4 2.4E+02 0.0053 30.0 10.9 34 146-179 63-96 (611)
91 PRK12418 cysteinyl-tRNA synthe 42.5 39 0.00084 33.7 4.7 38 21-58 9-55 (384)
92 PLN02946 cysteine-tRNA ligase 42.4 33 0.00073 35.9 4.4 41 18-58 77-126 (557)
93 PRK13276 cell wall biosynthesi 42.0 16 0.00034 34.0 1.8 82 87-170 8-96 (224)
94 KOG0149 Predicted RNA-binding 41.4 45 0.00098 31.5 4.6 67 17-87 8-74 (247)
95 PRK14535 cysS cysteinyl-tRNA s 41.3 37 0.0008 36.6 4.5 43 17-59 244-295 (699)
96 PF10881 DUF2726: Protein of u 41.2 1.9E+02 0.0042 23.4 8.3 116 32-158 4-124 (126)
97 KOG1824 TATA-binding protein-i 40.5 1.6E+02 0.0035 33.3 9.2 49 220-270 272-320 (1233)
98 PF01406 tRNA-synt_1e: tRNA sy 40.2 18 0.0004 35.0 1.9 50 16-65 3-63 (300)
99 cd00672 CysRS_core catalytic c 40.0 46 0.001 30.2 4.4 37 23-60 22-66 (213)
100 KOG2804 Phosphorylcholine tran 39.0 2E+02 0.0043 28.5 8.7 18 244-261 283-300 (348)
101 KOG3369 Transport protein part 37.9 41 0.00089 30.6 3.6 126 22-167 41-173 (199)
102 PTZ00399 cysteinyl-tRNA-synthe 37.2 20 0.00043 38.1 1.8 42 18-59 57-108 (651)
103 cd00818 IleRS_core catalytic c 36.7 16 0.00034 35.2 0.9 31 30-61 13-49 (338)
104 cd00674 LysRS_core_class_I cat 36.7 1.4E+02 0.0029 29.5 7.4 38 23-61 21-66 (353)
105 COG0162 TyrS Tyrosyl-tRNA synt 35.3 48 0.001 33.4 4.1 141 21-176 32-191 (401)
106 TIGR00467 lysS_arch lysyl-tRNA 34.4 1.1E+02 0.0024 31.7 6.6 77 23-105 20-104 (515)
107 PRK13848 conjugal transfer pro 33.0 1.6E+02 0.0035 24.2 6.0 33 183-215 2-34 (98)
108 TIGR03652 FeS_repair_RIC iron- 32.9 65 0.0014 29.1 4.2 80 89-170 3-89 (216)
109 COG0215 CysS Cysteinyl-tRNA sy 32.9 21 0.00046 36.5 1.2 58 22-79 23-93 (464)
110 cd00517 ATPS ATP-sulfurylase. 32.8 1.3E+02 0.0028 29.7 6.6 89 23-117 158-262 (353)
111 TIGR03492 conserved hypothetic 32.1 1.5E+02 0.0032 29.1 6.9 70 40-115 105-187 (396)
112 cd02068 radical_SAM_B12_BD B12 31.0 88 0.0019 25.2 4.4 13 103-115 86-98 (127)
113 TIGR03687 pupylate_cterm ubiqu 30.9 85 0.0018 21.0 3.3 15 221-235 16-30 (33)
114 PF05075 DUF684: Protein of un 30.4 3.2E+02 0.0069 26.6 8.8 78 184-261 98-205 (345)
115 PF08537 NBP1: Fungal Nap bind 30.4 4.7E+02 0.01 25.8 9.8 53 160-212 147-203 (323)
116 PF06013 WXG100: Proteins of 1 30.1 1.6E+02 0.0035 21.0 5.3 47 192-238 12-58 (86)
117 PF07217 Het-C: Heterokaryon i 29.9 3.3E+02 0.0072 29.1 9.2 119 154-279 339-460 (606)
118 PF14812 PBP1_TM: Transmembran 29.7 18 0.00038 28.8 0.0 9 271-279 33-41 (81)
119 COG1908 FrhD Coenzyme F420-red 29.1 1E+02 0.0023 26.5 4.5 61 15-84 26-86 (132)
120 COG2046 MET3 ATP sulfurylase ( 28.8 1.5E+02 0.0032 30.0 6.2 89 22-117 184-287 (397)
121 PF00976 ACTH_domain: Corticot 28.3 37 0.0008 23.4 1.3 26 5-30 3-28 (39)
122 PRK00260 cysS cysteinyl-tRNA s 28.2 77 0.0017 32.0 4.2 37 22-58 24-69 (463)
123 cd00851 MTH1175 This uncharact 27.5 2.1E+02 0.0045 21.7 5.8 45 99-154 55-100 (103)
124 COG0826 Collagenase and relate 27.1 5.1E+02 0.011 25.5 9.6 120 22-160 28-159 (347)
125 PHA00649 hypothetical protein 27.1 2.2E+02 0.0048 22.3 5.6 48 206-257 35-82 (83)
126 PRK14534 cysS cysteinyl-tRNA s 26.1 45 0.00097 34.3 2.2 29 20-48 20-56 (481)
127 PF01747 ATP-sulfurylase: ATP- 25.9 1.6E+02 0.0035 27.1 5.5 88 24-117 23-125 (215)
128 cd07650 F-BAR_Syp1p_like The F 24.7 5.4E+02 0.012 23.4 10.1 60 189-248 122-182 (228)
129 TIGR00435 cysS cysteinyl-tRNA 24.3 1.1E+02 0.0023 31.1 4.4 39 21-59 21-68 (465)
130 PF05597 Phasin: Poly(hydroxya 24.3 4.5E+02 0.0098 22.4 9.4 72 189-263 37-108 (132)
131 KOG4603 TBP-1 interacting prot 24.2 2.8E+02 0.0061 25.3 6.5 24 188-211 120-143 (201)
132 PF10376 Mei5: Double-strand r 24.0 3.7E+02 0.008 24.9 7.5 55 184-238 138-196 (221)
133 PF06524 NOA36: NOA36 protein; 23.7 49 0.0011 31.9 1.8 12 73-84 58-69 (314)
134 PRK13753 dihydropteroate synth 23.2 6.7E+02 0.015 24.0 12.7 162 25-198 7-199 (279)
135 TIGR02026 BchE magnesium-proto 23.0 1.8E+02 0.0038 29.6 5.7 72 19-104 62-133 (497)
136 PRK04149 sat sulfate adenylylt 22.6 1.9E+02 0.0041 29.0 5.7 88 22-117 187-290 (391)
137 PRK10263 DNA translocase FtsK; 22.3 80 0.0017 36.6 3.3 14 265-278 208-221 (1355)
138 PRK09288 purT phosphoribosylgl 22.1 4.6E+02 0.0099 25.0 8.1 17 100-116 68-84 (395)
139 KOG4032 Uncharacterized conser 21.8 1.4E+02 0.003 27.2 4.1 17 261-277 130-146 (184)
140 PF11043 DUF2856: Protein of u 21.6 94 0.002 25.0 2.7 23 143-165 13-35 (97)
141 cd06548 GH18_chitinase The GH1 21.3 3.8E+02 0.0082 25.3 7.3 66 33-114 67-132 (322)
142 PF14388 DUF4419: Domain of un 21.0 2.1E+02 0.0045 27.5 5.5 35 218-252 164-200 (299)
143 PF06148 COG2: COG (conserved 20.5 1.3E+02 0.0027 25.0 3.5 57 150-208 44-100 (133)
144 PF02310 B12-binding: B12 bind 20.5 1.5E+02 0.0032 23.2 3.7 17 99-115 95-112 (121)
145 PHA03187 UL14 tegument protein 20.4 7.1E+02 0.015 24.4 8.8 49 185-238 59-108 (322)
No 1
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=1.8e-82 Score=591.14 Aligned_cols=240 Identities=56% Similarity=0.968 Sum_probs=226.8
Q ss_pred CCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCC
Q 023135 16 PPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAP 95 (287)
Q Consensus 16 ~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p 95 (287)
.|.+||+|||++|+|||||.||+++|+|||++|||+|||||||+|+.+|++||++||+..||++.|+||+|||+||+++|
T Consensus 58 ~p~~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~KG~TVm~e~ERyE~lrHCryVDEVi~~AP 137 (348)
T KOG2804|consen 58 LPTDRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFKGRTVMNENERYEALRHCRYVDEVIPNAP 137 (348)
T ss_pred CCCCCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhccCceecChHHHHHHhhhhhhhhhhccCCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhHHHHHHHhhcCCchh
Q 023135 96 WVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTRK 175 (287)
Q Consensus 96 ~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd~y~~Rnl~rg~~~~ 175 (287)
|.+|++||++|+||||||+++||... ..+|+|+.+|++|+|++|+||+|||||+||+||+++|+.|++|||+|||||+
T Consensus 138 W~lt~EFL~~HKIDfVAHDdIPY~s~--gsdDiY~~vK~~G~F~~T~RTeGvSTSDiI~rIVrDYD~YvrRNL~RGys~k 215 (348)
T KOG2804|consen 138 WTLTPEFLEKHKIDFVAHDDIPYVSA--GSDDIYKPVKEAGMFLPTQRTEGVSTSDIITRIVRDYDVYVRRNLARGYSAK 215 (348)
T ss_pred ccccHHHHHhcccceeeccCccccCC--CchhHHHHHHHhcccccccccCCccHHHHHHHHHHhHHHHHHhhhcccCCHH
Confidence 99999999999999999999999943 4689999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 023135 176 ELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERL 255 (287)
Q Consensus 176 ~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~ 255 (287)
||||||+++++|+++++|++|++++|.++++++++ +.+++++|+++|++||.+||++|+++++ ++++.++++++|
T Consensus 216 eLnVsfl~~kk~~~~~k~~~lk~~vk~~~e~~~~~---~~~l~~kW~e~s~e~i~~fle~f~~~~~--~n~~~~~~~~rl 290 (348)
T KOG2804|consen 216 ELNVSFLKEKKLRLQNKVDELKEKVKEQQEKVKEF---SRDLIQKWEEKSREFIAGFLELFGKGGA--LNAFDDELKGRL 290 (348)
T ss_pred hcchHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHhHHHHHHHHHHHhccccc--hhhhHhHHHHHH
Confidence 99999999999999999999999999999999998 5678999999999999999999999886 666666666666
Q ss_pred hccCCCC
Q 023135 256 RGQHLIG 262 (287)
Q Consensus 256 ~~~~~~~ 262 (287)
+.+.||+
T Consensus 291 ~~~~Sp~ 297 (348)
T KOG2804|consen 291 LQALSPP 297 (348)
T ss_pred HhhcCCC
Confidence 6666643
No 2
>PLN02413 choline-phosphate cytidylyltransferase
Probab=100.00 E-value=1e-78 Score=565.13 Aligned_cols=256 Identities=81% Similarity=1.275 Sum_probs=245.9
Q ss_pred CCCCCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCccc
Q 023135 11 TNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEV 90 (287)
Q Consensus 11 ~~~~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeV 90 (287)
...++||..||++||++|+||+||.||+++|++||++||+++|||||++|++++++||+||||++||+++|+||+|||+|
T Consensus 17 ~~~~~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KGrPIm~~~ER~e~V~acKyVDeV 96 (294)
T PLN02413 17 ATPSSSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKGKTVMTEDERYESLRHCKWVDEV 96 (294)
T ss_pred CCCCCCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCCCCCCCHHHHHHHHHhcccccEE
Confidence 55667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhHHHHHHHhhc
Q 023135 91 IPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDR 170 (287)
Q Consensus 91 vi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd~y~~Rnl~r 170 (287)
|+++||.++.+||++++||+||||+++|.++++.+.|+|+.+|++|+|.+++||+|+|||+||+||+++|+.|++||++|
T Consensus 97 V~~aP~~~t~efI~~~kpDiVvhGd~~~~d~~~~g~D~Y~~vK~~G~f~~i~Rt~gvSTTdII~RIlk~y~~Y~~Rn~~r 176 (294)
T PLN02413 97 IPDAPWVITQEFLDKHRIDYVAHDALPYADASGAGKDVYEFVKKIGKFKETKRTDGISTSDIIMRIVKDYNQYVMRNLAR 176 (294)
T ss_pred eeCCCccccHHHHHHhCCCEEEECCCCCccccccCchhHHHHHHCCeEEEecCCCCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998776677899999999999999999999999999999999999999999999
Q ss_pred CCchhhhccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHhhhhhhhHH
Q 023135 171 GYTRKELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTAS----MRRNEWVENADRLVAGFLEMFEERCHKMGTA 246 (287)
Q Consensus 171 g~~~~~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~ 246 (287)
|+||+||||||+|+++|++|++|++|++|+++++++++++++.++ +++++|++||++||.+||++|+++||+|+|+
T Consensus 177 g~~~~~l~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~ 256 (294)
T PLN02413 177 GYSRKDLGVSYVKEKRLRVNMGLKKLREKVKEQQEKVGEKIQTVAKTAGMHRNEWVENADRWVAGFLEKFEEGCHKMGTA 256 (294)
T ss_pred cCCHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998887 6889999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcCC
Q 023135 247 IKDRIQERLRGQHLIGFIYD 266 (287)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (287)
||+|||++|++|+|.+...+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~ 276 (294)
T PLN02413 257 IKDRIQERLMRQQSSGLLEL 276 (294)
T ss_pred HHHHHHHHhccccccccccc
Confidence 99999999999999665543
No 3
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=100.00 E-value=4.5e-42 Score=294.32 Aligned_cols=150 Identities=62% Similarity=1.054 Sum_probs=142.2
Q ss_pred CCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 20 RPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 20 r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
++++||++|+|||||.||+++|++|+++||+++|||||++|+++.++||+|++|++||+++|++|+|||+|++.+||.++
T Consensus 1 ~~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 1 RPVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGPPVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CCeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCCCcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 46799999999999999999999999998779999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRG 171 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd~y~~Rnl~rg 171 (287)
.+++++++||++++|++|+.+. .+.++|+.+++.|++.+++||+|+|||+|++||+++|+.|.+||+.+|
T Consensus 81 ~~~i~~~~~d~vv~G~d~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~Stt~ii~rI~~~~~~~~~r~~~~~ 150 (150)
T cd02174 81 PEFLDKYKCDYVAHGDDIYLDA--DGEDCYQEVKDAGRFKEVKRTEGVSTTDLIGRILLDYRDYHRRNLQRG 150 (150)
T ss_pred HHHHHHhCCCEEEECCCCCCCC--CchhHHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhHHHHHHhhhccC
Confidence 9999999999999999987643 357899999999999999999999999999999999999999999987
No 4
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=100.00 E-value=2.9e-39 Score=277.33 Aligned_cols=148 Identities=38% Similarity=0.684 Sum_probs=137.3
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG--KTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg--rpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
++||++|+|||||.||+++|++|+++ |++|||||++|+++...|| +|++|++||+++|.+|+|||+|++.+|+.++
T Consensus 3 ~iv~~~G~FD~~H~GHi~~L~~A~~l--gd~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~ 80 (152)
T cd02173 3 KVVYVDGAFDLFHIGHIEFLEKAREL--GDYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVIT 80 (152)
T ss_pred eEEEEcCcccCCCHHHHHHHHHHHHc--CCEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcch
Confidence 58999999999999999999999999 5899999999999988887 4999999999999999999999999999999
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhHHHHHHHhhcC
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRG 171 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd~y~~Rnl~rg 171 (287)
.+++++++||++++|.++..+....++++|..++..|++..+++++|+|||+|++||+++|+.|++||.+||
T Consensus 81 ~~~~~~~~~d~vv~G~d~~~~~~~~~~~~~~~~~~~G~~~~v~~~~~~Sts~Ii~rI~~~~~~y~~r~~~k~ 152 (152)
T cd02173 81 KELIEHFKIDVVVHGKTEETPDSLDGEDPYAVPKEMGIFKEIDSGSDLTTRDIVNRIIKNRLAYEARNKKKE 152 (152)
T ss_pred HHHHHHhCCCEEEECCCCccccccCchHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHhHHHHHHHHhccC
Confidence 999999999999999987653112357899999999999999999999999999999999999999999986
No 5
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=8.6e-40 Score=318.99 Aligned_cols=168 Identities=35% Similarity=0.580 Sum_probs=152.1
Q ss_pred cccccccCCCCCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC--CCCCCHHHHHHHH
Q 023135 4 RKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG--KTVMTDKERYESL 81 (287)
Q Consensus 4 r~~~~~~~~~~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg--rpv~s~eER~e~V 81 (287)
|++++|+....|.|.. ++||++|+||+||.||+++|++|+++ |++|||||++|+++.++|| +|+|+++||+++|
T Consensus 236 ~~i~qf~~g~~p~~~~--~iVyv~G~FDlfH~GHi~~L~~Ak~l--Gd~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v 311 (418)
T PLN02406 236 RRIVQFSNGKGPGPDA--RIVYIDGAFDLFHAGHVEILRLARAL--GDFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSV 311 (418)
T ss_pred HHHHHHhccCCCCCCC--eEEEECCeeccCCHHHHHHHHHHHHh--CCEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHH
Confidence 5677888877655544 48999999999999999999999998 6899999999999999998 6999999999999
Q ss_pred HhccCCcccccCCCCCchHHHHhhcCCCEEEeCCCccc-CCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhh
Q 023135 82 RHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYA-DATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDY 160 (287)
Q Consensus 82 ~~~k~VDeVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~-~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~y 160 (287)
++|+|||+||+++||.++.++|++++||+||||+++.. ...+.+.|.|...|++|+|..+++++|+|||+||+||++++
T Consensus 312 ~ack~VD~VVi~ap~~~~~~~i~~~~~d~vvhG~~~~~~~~~~~~~D~Y~v~k~~G~~~~i~~~~~iSTt~II~RI~~~~ 391 (418)
T PLN02406 312 LACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTVAENNDFLKGEDDPYAVPKSMGIFQVLESPLDITTSTIIRRIVANH 391 (418)
T ss_pred hccCcccEEEeCCCCCCCHHHHHHhCCCEEEECCcCCCccccCCCCcchHHHhcCceEEEeCCCCCCcHHHHHHHHHHhH
Confidence 99999999999999999999999999999999987642 22334678999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCchh
Q 023135 161 NQYVTRNLDRGYTRK 175 (287)
Q Consensus 161 d~y~~Rnl~rg~~~~ 175 (287)
+.|++||.+|+.+..
T Consensus 392 ~~y~~Rn~~K~~ke~ 406 (418)
T PLN02406 392 EAYQKRNEKKAESEK 406 (418)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987664
No 6
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=4e-38 Score=302.25 Aligned_cols=167 Identities=34% Similarity=0.573 Sum_probs=149.8
Q ss_pred cccccccCCCCCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC--CCCCCHHHHHHHH
Q 023135 4 RKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG--KTVMTDKERYESL 81 (287)
Q Consensus 4 r~~~~~~~~~~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg--rpv~s~eER~e~V 81 (287)
|++++|+.+.+ |....++||++|+|||||.||+++|++|+++| ++|||||++|++++.+|| +|+||++||+++|
T Consensus 177 ~~~~~~~~~~~--~~~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg--d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v 252 (353)
T PTZ00308 177 RKIVQFSNNRS--PKPGDRIVYVDGSFDLFHIGHIRVLQKARELG--DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGV 252 (353)
T ss_pred hheeeccccCC--CCCCCeEEEECCccCCCCHHHHHHHHHHHHhC--CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHH
Confidence 57778888765 33344589999999999999999999999994 899999999999999998 5999999999999
Q ss_pred HhccCCcccccCCCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhH
Q 023135 82 RHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 82 ~~~k~VDeVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd 161 (287)
++|+|||+|++.+|+.++.+++++++||+++||.++.......+.|.|+..+.+|+|..+++++|+|||+||+||+++|+
T Consensus 253 ~a~~~Vd~Vvi~~~~~~~~~~i~~~~~d~vv~G~d~~~~~~~~~~d~y~~~k~~G~~~~i~~~~~~sTt~ii~RI~~~r~ 332 (353)
T PTZ00308 253 LSCRYVDEVVIGAPFDVTKEVIDSLHINVVVGGKFSDLVNEEGGSDPYEVPKAMGIFKEVDSGCDLTTDSIVDRVVKNRL 332 (353)
T ss_pred HhhCCCCeEEEcCCCCChHHHHHHhCCCEEEECCCCccccCCCcccchHHHhcCceEEEeCCCCCccHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999998764212235789999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCch
Q 023135 162 QYVTRNLDRGYTR 174 (287)
Q Consensus 162 ~y~~Rnl~rg~~~ 174 (287)
.|++||.+|+.+.
T Consensus 333 ~~~~r~~~k~~~e 345 (353)
T PTZ00308 333 AFLKRQAKKRAKE 345 (353)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997754
No 7
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-38 Score=299.34 Aligned_cols=139 Identities=48% Similarity=0.848 Sum_probs=132.2
Q ss_pred CCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCC
Q 023135 16 PPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAP 95 (287)
Q Consensus 16 ~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p 95 (287)
+...+|.+||++||||++|+||.++|+|||++ |++|||||++|+++..+||.|||+.+||++++++||||||||.++|
T Consensus 3 ~~~~~~~rVw~DGCfDm~HyGHanaLrQAkal--GdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~AP 80 (358)
T KOG2803|consen 3 PKKNRPVRVWADGCFDMVHYGHANALRQAKAL--GDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAP 80 (358)
T ss_pred CcCCCceeEEeccchhhhhhhhhHHHHHHHHh--CCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCC
Confidence 56778999999999999999999999999999 7999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHH
Q 023135 96 WVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 96 ~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~ 158 (287)
|..+.++++++++||++||+++..++ .|.|.|..+|++|++.+++||.|||||+|+.|++-
T Consensus 81 yvtt~~~md~y~cd~vvHGdDit~~a--~G~D~Y~~vK~agrykevKRT~GVSTTelvgRmll 141 (358)
T KOG2803|consen 81 YVTTLEWMDKYGCDYVVHGDDITLDA--DGLDCYRLVKAAGRYKEVKRTEGVSTTELVGRMLL 141 (358)
T ss_pred eeccHHHHHHhCCeEEEeCCcceecC--CCccHHHHHHHhcchheeeeccCcchhhhhhHhhh
Confidence 99999999999999999999976655 57899999999999999999999999999999753
No 8
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=100.00 E-value=2.2e-35 Score=250.95 Aligned_cols=132 Identities=43% Similarity=0.582 Sum_probs=116.1
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccc-cCCCCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHK-YKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~-~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
|++|+++||||+||+||+++|+|||+++ ++|||.+..|+.+.+ .||+||+++++|+++|++|+|||+|++++||..+
T Consensus 1 ~~rV~~~GtFDilH~GHi~~L~~Ak~lG--d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~ 78 (140)
T COG0615 1 MKRVWADGTFDILHPGHIEFLRQAKKLG--DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIK 78 (140)
T ss_pred CcEEEEeeEEEEechhHHHHHHHHHHhC--CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccC
Confidence 4579999999999999999999999995 788888887777666 6778999999999999999999999999999998
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCC------CChHHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDG------ISTSDLIMRIVK 158 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~g------iSTS~II~RI~~ 158 (287)
.+++++++||+||||++|+.+ .+.+.|+..+ +|.+.+++||+| +||++|++||..
T Consensus 79 ~~~i~~~k~Div~lG~D~~~d---~~~l~~~~~k-~G~~~~v~R~~g~~~~~~~st~~i~~~i~~ 139 (140)
T COG0615 79 FEDIEEYKPDIVVLGDDQKFD---EDDLKYELVK-RGLFVEVKRTEGVSTCELISTSDIIKRILE 139 (140)
T ss_pred hHHHHHhCCCEEEECCCCcCC---hHHHHHHHHH-cCCeeEEEeccCcccCcccchHHHHHHHhc
Confidence 999999999999999999854 3455666666 999999999999 777888877753
No 9
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=100.00 E-value=6.1e-34 Score=278.02 Aligned_cols=138 Identities=41% Similarity=0.787 Sum_probs=127.5
Q ss_pred CCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCC
Q 023135 17 PRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPW 96 (287)
Q Consensus 17 ~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~ 96 (287)
...++.+||++||||+||.||+++|+||+++ |++|||||++|+++.++||+|++|++||+++|++|+|||+|++++||
T Consensus 49 ~~~~~~rV~~~G~FDllH~GH~~~L~qAk~l--Gd~LIVGV~SDe~i~~~Kg~PV~~~eER~~~v~alk~VD~Vv~~apy 126 (418)
T PLN02406 49 KKKKPVRVYMDGCFDMMHYGHANALRQARAL--GDELVVGVVSDEEIIANKGPPVTPMHERMIMVSGVKWVDEVIPDAPY 126 (418)
T ss_pred cCCCceEEEEcCeeCCCCHHHHHHHHHHHHh--CCEEEEEEecChhhhccCCCCcCCHHHHHHHHHhcCCCceEEeCCcc
Confidence 4556789999999999999999999999999 58999999999999999999999999999999999999999999999
Q ss_pred CchHHHH----hhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHH
Q 023135 97 VVTQDFL----DKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 97 ~~t~efl----~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~ 158 (287)
.++.+++ ++++||++|||+||.... .+.|.|..++..|++..++||+|+|||+|+.||+.
T Consensus 127 ~~~~d~~~~li~~~~~D~vVhGdD~~~~~--~g~d~y~~~k~~Gr~~~i~rt~GvSTTdIv~Ril~ 190 (418)
T PLN02406 127 AITEEFMNKLFNEYNIDYIIHGDDPCLLP--DGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLL 190 (418)
T ss_pred ccchHHHHHHHHHhCCCEEEECCCccccC--CchHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9888877 489999999999986532 46799999999999999999999999999999985
No 10
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=100.00 E-value=1.5e-32 Score=263.89 Aligned_cols=144 Identities=42% Similarity=0.765 Sum_probs=131.4
Q ss_pred CCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccC
Q 023135 14 AEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPD 93 (287)
Q Consensus 14 ~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~ 93 (287)
+||...++++||++|+||++|.||+++|+||+++ |+.|+|||++|+.+.+.||.|+++++||+++|++|+|||+|+++
T Consensus 4 ~~~~~~~~~~v~~~G~FD~vH~GH~~~L~qAk~~--g~~Livgv~~d~~i~~~K~~pi~~~eeR~~~l~~~~~VD~Vv~~ 81 (353)
T PTZ00308 4 IPPKKPGTIRVWVDGCFDMLHFGHANALRQARAL--GDELFVGCHSDEEIMRNKGPPVMHQEERYEALRACKWVDEVVEG 81 (353)
T ss_pred CCCCCCCcEEEEEEeecccCCHHHHHHHHHHHHh--CCEEEEEeCCHHHHhhcCCCCCCCHHHHHHHHHhcCCccEEEEC
Confidence 3444566689999999999999999999999999 58999999999999999999999999999999999999999998
Q ss_pred CCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhH
Q 023135 94 APWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 94 ~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd 161 (287)
.||..+.+|+++++||+|+||+|+..+. .+.+.|+.+++.|++.+++||+|+|||+|+.||+....
T Consensus 82 ~p~~~~~~fI~~l~~d~vv~GdD~~~g~--~g~~~~~~lk~~G~~~~v~rt~g~STt~ii~ril~~~~ 147 (353)
T PTZ00308 82 YPYTTRLEDLERLECDFVVHGDDISVDL--NGRNSYQEIIDAGKFKVVKRTEGISTTDLVGRMLLCTK 147 (353)
T ss_pred CCCCchHHHHHHhCCCEEEECCCCCCCC--CccchHHHHHhCCeEEEEecCCCCCHHHHHHHHHHhhh
Confidence 9998889999999999999999886653 35678999999999999999999999999999997554
No 11
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.97 E-value=4.7e-31 Score=248.03 Aligned_cols=168 Identities=35% Similarity=0.607 Sum_probs=147.9
Q ss_pred cccccccCCCCCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCC--CCCCHHHHHHHH
Q 023135 4 RKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGK--TVMTDKERYESL 81 (287)
Q Consensus 4 r~~~~~~~~~~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgr--pv~s~eER~e~V 81 (287)
+|..+|+....|.|..+ +||++|.|||||.||+.+|+.|+.+ |+||||||++|+.+..+||. ||||..||...|
T Consensus 183 ~~i~~~~~G~~p~p~~k--vVYvdGaFDLFH~GHl~~Le~ak~l--gdyLIvGI~~D~~vneykgs~~PiMnl~ER~Lsv 258 (358)
T KOG2803|consen 183 QKIIQFSNGREPKPTDK--VVYVDGAFDLFHAGHLDFLEKAKRL--GDYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSV 258 (358)
T ss_pred ccceEeecCCCCCCCCc--EEEEcCchhhhccchHHHHHHHHhc--cCceEEEeecCcchhhhccCCCccchHHHHHHHH
Confidence 35556777776666666 8999999999999999999999999 48999999999999999996 999999999999
Q ss_pred HhccCCcccccCCCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhH
Q 023135 82 RHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 82 ~~~k~VDeVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd 161 (287)
.+|||||+|++++||.++.++++.++++.|+||..+.. . ...+.|..++..|.+.+......++|+.|++||..++.
T Consensus 259 lackyVdeVvvGaP~~v~s~~i~~~~~~~v~~g~~~~~--~-~~~~py~~~k~~~i~~~~~~~~dltte~Iv~RIis~r~ 335 (358)
T KOG2803|consen 259 LACKYVDEVVVGAPYEVTSEFIKLFNIDKVAHGTIPDF--R-DPSDPYADPKRRGIFEEADSGSDLTTELIVERIISNRQ 335 (358)
T ss_pred hhhcccceEEEcCchhccHHHHHhcCceEEEEeccccc--c-CccCccccchhhcchhhcCCcccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984432 2 23458999999999888866556999999999999999
Q ss_pred HHHHHHhhcCCchhhhc
Q 023135 162 QYVTRNLDRGYTRKELG 178 (287)
Q Consensus 162 ~y~~Rnl~rg~~~~~ln 178 (287)
.|..||.+|+.+...++
T Consensus 336 ~Ye~Rn~kk~~k~~~~~ 352 (358)
T KOG2803|consen 336 AYEARNQKKEGKEAPLN 352 (358)
T ss_pred HHHHHhHHhhhcccchh
Confidence 99999999998876553
No 12
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.94 E-value=2.8e-26 Score=194.71 Aligned_cols=136 Identities=26% Similarity=0.280 Sum_probs=115.5
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHH
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQD 101 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~e 101 (287)
.+|++.|+||++|.||.++|++|++++ +.++|++++|+.+...+++|++|.+||+++|++|+|||.|++. |+..+.+
T Consensus 5 ~~vv~~G~FDgvH~GH~~ll~~a~~~~--~~~vv~~~~d~~~~~~~~~~i~~~~eR~~~l~~lg~VD~vi~~-~~~~~~~ 81 (144)
T cd02172 5 TVVLCHGVFDLLHPGHVRHLQAARSLG--DILVVSLTSDRYVNKGPGRPIFPEDLRAEVLAALGFVDYVVLF-DNPTALE 81 (144)
T ss_pred EEEEEecccCCCCHHHHHHHHHHHHhC--CeEEEEEeChHHhccCCCCCCCCHHHHHHHHHccCCccEEEEC-CCCCHHH
Confidence 369999999999999999999999995 7999999999887766677999999999999999999999874 5556789
Q ss_pred HHhhcCCCEEEeCCCcccCCCC---CCccHHHHHHhcC-eEEEecccCCCChHHHHHHHHHhhH
Q 023135 102 FLDKHQIDYVAHDSLPYADATG---SGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 102 fl~~~~iD~Vv~G~d~y~~~~g---~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~~~yd 161 (287)
|+++++|++|++|.++-.+..+ ....-++.++++| ++.++ ||+|+|||+|++||+.+|+
T Consensus 82 fi~~l~~~~vv~G~d~~fg~~~~~~~~~g~~~~l~~~g~~~~~~-~~~~~sts~li~~i~~~~~ 144 (144)
T cd02172 82 IIDALQPNIYVKGGDYENPENDVTGKIAPEAEAVKAYGGKIVFT-GEIVFSSSALINRIFDELD 144 (144)
T ss_pred HHHHhCCCEEEECCCcccCccccccchhhhHHHHHHhCCEEEEe-cCCCcchHHHHHHHHhhcC
Confidence 9999999999999876432211 1122377888887 77777 9999999999999999985
No 13
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.93 E-value=1.1e-25 Score=190.91 Aligned_cols=130 Identities=26% Similarity=0.370 Sum_probs=112.9
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG--KTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg--rpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
.+|++.|+||.+|.||+++|++|+++ ++.++|||+.|+.....|+ .|++|.+||++++++|+|||.|++.+++. .
T Consensus 12 ~~v~~~G~FDgvH~GH~~ll~~a~~~--~~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~-~ 88 (144)
T TIGR02199 12 KIVFTNGCFDILHAGHVSYLQQARAL--GDRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDT-P 88 (144)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHh--CCccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCC-H
Confidence 47999999999999999999999999 4789999999998776665 47999999999999999999999865543 6
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~~ 158 (287)
.+|++.++|+++++|.++-.+ ....++.++++| ++..+++++++|||+|++||++
T Consensus 89 ~~fi~~l~~~~vv~G~d~~~~----~~~~~~~~~~~g~~v~~~~~~~~iSSs~Ir~ri~~ 144 (144)
T TIGR02199 89 EELIGELKPDILVKGGDYKVE----TLVGAELVESYGGQVVLLPFVEGRSTTAIIEKILK 144 (144)
T ss_pred HHHHHHhCCCEEEECCCCCCC----cchhHHHHHHcCCEEEEEeCCCCcCHHHHHHHHhC
Confidence 899999999999999975431 223467888887 9999999999999999999964
No 14
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.93 E-value=1.7e-25 Score=185.88 Aligned_cols=133 Identities=38% Similarity=0.600 Sum_probs=116.0
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQ 100 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~ 100 (287)
+++|++.|+||++|.||+.+|++|++++ ++|+|||+.|+.+...|+.|++|.+||++++++|++||.|++.+|+....
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~--~~l~v~v~~~~~~~~~~~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG--DYLIVGVARDETVAKIKRRPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECCcHHHHhcCCCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 4689999999999999999999999995 79999999998776677779999999999999999999999988887544
Q ss_pred HHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEec--ccCCCChHHHHHHHHH
Q 023135 101 DFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETK--RTDGISTSDLIMRIVK 158 (287)
Q Consensus 101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~--rT~giSTS~II~RI~~ 158 (287)
.+.+++||++++|.++..+. .....|+.++++|.++.+. ++.++|||.|+++|++
T Consensus 79 -~l~~~~~~~vv~G~d~~fg~--~~~~~~~~l~~~g~~~~~~~~~~~~vSSt~Ir~~i~~ 135 (136)
T cd02170 79 -PLEELKPDVIVLGDDQKNGV--DEEEVYEELKKRGKVIEVPRKKTEGISSSDIIKRILE 135 (136)
T ss_pred -HHHHHCCCEEEECCCCCCCC--cchhHHHHHHHCCeEEEECCCCCCCCcHHHHHHHHHh
Confidence 56779999999999886542 2345689999999888888 8999999999999864
No 15
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.93 E-value=2.7e-25 Score=183.24 Aligned_cols=123 Identities=32% Similarity=0.455 Sum_probs=105.3
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHHHH
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFL 103 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~efl 103 (287)
|++.|+||++|.||.++|++|++++ ++++|||++|+.....++.|++|.+||++++++|+|||.|++..||....+++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~--~~~iv~v~~d~~~~~~~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG--DYLIVALSTDEFNLQKQKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC--CEEEEEEechHHHhhcCCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5889999999999999999999994 78999999999776656678999999999999999999998888887777888
Q ss_pred hhcCCCEEEeCCCcccCCCCCCccHHHHHHhc-C-eEEEecccCCCChHHHHHHH
Q 023135 104 DKHQIDYVAHDSLPYADATGSGKDVYEFVKSI-G-KFKETKRTDGISTSDLIMRI 156 (287)
Q Consensus 104 ~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~-G-~~~~~~rT~giSTS~II~RI 156 (287)
+.++||++++|.|+- |. ++.+++. | .+..+++++++|||.|++.|
T Consensus 79 ~~~~~~~vv~G~D~~----g~----~~~l~~~~~~~v~~v~~~~~vSST~Ir~~~ 125 (125)
T TIGR01518 79 IDFNIDVFVMGDDWE----GK----FDFLKDECPLKVVYLPRTEGVSTTKIKKEI 125 (125)
T ss_pred HHcCCCEEEECCCcc----ch----HHHHhhccCcEEEEeCCCCCccHHHHHhhC
Confidence 999999999998762 21 3445544 4 77788999999999998754
No 16
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.91 E-value=7.1e-24 Score=174.68 Aligned_cols=128 Identities=31% Similarity=0.410 Sum_probs=108.5
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQ 100 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~ 100 (287)
|++|++.|+||++|.||+.+|++|++++ +.|+|||++|+.....+..|++|.++|++++++|+|||.|++..+|....
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~--~~l~v~v~~d~~~~~~~~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG--DKLIVAVSTDEFNAGKGKKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC--CEEEEEEeccHhHHhcCCCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 4579999999999999999999999995 78999999997533223358999999999999999999998766776566
Q ss_pred HHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHH
Q 023135 101 DFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~ 158 (287)
+.+++++|++|++|.|+ .| .++.++++|.++.++++.++|||.|++.|.+
T Consensus 79 ~~~~~l~~~~vv~G~d~----~g----~~~~l~~~~~v~~~~~~~~iSSt~Ir~~i~~ 128 (129)
T cd02171 79 EDIKKYNVDVFVMGDDW----EG----KFDFLKEYCEVVYLPRTKGISSTQLKEMLKK 128 (129)
T ss_pred HHHHHhCCCEEEECCCC----cc----hHHHHHhCcEEEEeCCCCCcChHHHHHHHhh
Confidence 77788999999999865 12 2677899999999999999999999988754
No 17
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.90 E-value=1.7e-23 Score=204.39 Aligned_cols=130 Identities=26% Similarity=0.316 Sum_probs=112.2
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG--KTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg--rpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
++||+.|+||++|.||+++|++|+++ +++|+|||++|+.+.++|| +|++++++|.+.+++|++||+|++.+ ...+
T Consensus 341 ~iv~~~G~fD~~H~GH~~~l~~a~~~--~~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~-~~~~ 417 (473)
T PRK11316 341 KIVMTNGCFDILHAGHVSYLANARKL--GDRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFE-EDTP 417 (473)
T ss_pred eEEEEecccccCCHHHHHHHHHHHHh--CCeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCC-CCCH
Confidence 58999999999999999999999999 5789999999999988886 58999999999999999999998754 3356
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIV 157 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~ 157 (287)
.+|+++++||++++|.++.... ....+...+..|++++++||+++|||+|++||.
T Consensus 418 ~~~~~~~~~d~vv~G~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~st~~i~~ri~ 472 (473)
T PRK11316 418 QRLIAEILPDLLVKGGDYKPEE---IAGSKEVWANGGEVKVLNFEDGCSTTNIIKKIR 472 (473)
T ss_pred HHHHHHhCCCEEEECCCCCCCc---cccHHHHHHcCCEEEEEcCCCCcCHHHHHHHHh
Confidence 7999999999999998764321 233455556667999999999999999999995
No 18
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=7.1e-23 Score=198.70 Aligned_cols=130 Identities=24% Similarity=0.377 Sum_probs=113.1
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC--CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG--KTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg--rpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
++|+++||||++|.||+.+|.+||++ ||.|||||+||.++.+.|| |||.+++.|+.++.++..||.|++.+.- .+
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~l--gd~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~ed-TP 409 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARAL--GDRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDED-TP 409 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhh--CCeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecCC-CH
Confidence 38999999999999999999999999 5999999999999999999 6999999999999999999999985442 34
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~~ 158 (287)
.++++..+||++|.|.|+..+.- .+ -+.++.+| ++..++..+|+|||.||++|.+
T Consensus 410 ~~LI~~~~PdilVKGgDy~~~~i-~g---~~~v~~~GG~v~~i~f~~g~STt~ii~ki~~ 465 (467)
T COG2870 410 EELIEAVKPDILVKGGDYKIEKI-VG---ADIVEAYGGEVLLIPFEEGKSTTKIIEKIRA 465 (467)
T ss_pred HHHHHHhCcceEEccCCCChhhc-cc---hhhhhhcCCeEEEEecccCCcHHHHHHHHhc
Confidence 68999999999999997654321 11 24567776 9999999999999999999965
No 19
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.81 E-value=2.9e-19 Score=153.76 Aligned_cols=129 Identities=20% Similarity=0.297 Sum_probs=96.9
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc----cCCcccc---cCC
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC----RWVDEVI---PDA 94 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~----k~VDeVv---i~~ 94 (287)
.+|+++|+|||+|.||+.+|++|+.+ +++|+|||++|+.+..+|+.|++|+++|+++|+.+ ...+.+. +.+
T Consensus 2 ~~v~~gGtFDplH~GH~~ll~~A~~~--~d~livgi~~d~~~~~~K~~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~d 79 (153)
T PRK00777 2 MKVAVGGTFDPLHDGHRALLRKAFEL--GKRVTIGLTSDEFAKSYKKHKVRPYEVRLKNLKKFLKAVEYDREYEIVKIDD 79 (153)
T ss_pred cEEEEecccCCCCHHHHHHHHHHHHc--CCEEEEEEcCCccccccCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeccc
Confidence 47999999999999999999999998 48999999999988777778999999999999953 1222222 235
Q ss_pred CCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC----eEEEecc-----cCCCChHHHHHHHHHhh
Q 023135 95 PWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG----KFKETKR-----TDGISTSDLIMRIVKDY 160 (287)
Q Consensus 95 p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G----~~~~~~r-----T~giSTS~II~RI~~~y 160 (287)
|++++.. .++|+++.|.+.+.+ +..+-+..++.| .++.++. ++.+|||.|+++++...
T Consensus 80 ~~gp~~~----~~~d~ivvs~et~~~----~~~in~~r~~~gl~~l~i~~v~~~~~~~~~~~SSt~Ir~~~~~~~ 146 (153)
T PRK00777 80 PYGPALE----DDFDAIVVSPETYPG----ALKINEIRRERGLKPLEIVVIDFVLAEDGKPISSTRIRRGEIDEH 146 (153)
T ss_pred cCCCccc----cCCCEEEEChhhhhh----HHHHHHHHHHCCCCceEEEEEeeeecCCCCeeeHHHHHHhhhccc
Confidence 6655432 369999999875432 233444556667 4456665 67799999999887643
No 20
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.74 E-value=2.9e-17 Score=141.35 Aligned_cols=128 Identities=17% Similarity=0.103 Sum_probs=96.2
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~~~t 99 (287)
|++++++|+|||+|.||++++++|++.| |.|+|++++++ .| +|.+|.++|++|++. +++++.|.+......+
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 73 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF--DEVIVAVAINP----SK-KPLFSLEERVELIREATAHLPNVEVVSFDGLL 73 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC--CEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEEecCCccH
Confidence 3579999999999999999999999996 89999998875 24 589999999999996 8999998775444568
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHH--HHhcC----eEEEeccc---CCCChHHHHHHHHHh
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEF--VKSIG----KFKETKRT---DGISTSDLIMRIVKD 159 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~--lK~~G----~~~~~~rT---~giSTS~II~RI~~~ 159 (287)
.++++.+++++++.|.+...+| +..... +.+.| ..+.+..+ ..||||.|+++|...
T Consensus 74 ~~~~~~~~~~~~~~gl~~w~d~----e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~i~~g 138 (159)
T PRK00168 74 VDFAREVGATVIVRGLRAVSDF----EYEFQMAGMNRKLAPEIETVFLMPSPEYSFISSSLVKEVARLG 138 (159)
T ss_pred HHHHHHcCCCEEEecCcchhhH----HHHHHHHHhCCCCCCCCcEEEEeCCCCcceecHHHHHHHHHcC
Confidence 9999999999999997544433 111111 11111 12233232 369999999998643
No 21
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.70 E-value=6.1e-17 Score=154.45 Aligned_cols=126 Identities=18% Similarity=0.243 Sum_probs=98.2
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc--cCCcccc---cCCCCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC--RWVDEVI---PDAPWV 97 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~--k~VDeVv---i~~p~~ 97 (287)
+|++.||||+||.||..+|++|+.+ +++|||||++|+++.++|.+| .|+++|+++|+++ ++++.+. +.+|++
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~--gd~LiVgvt~D~~~~~~k~~~-~~~e~R~~~v~~fl~~~~~~~~i~~i~D~~G 78 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIET--GDEVVIGLTSDEYVRKNKVYP-IPYEDRKRKLENFIKKFTNKFRIRPIDDRYG 78 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHc--CCEEEEEEccHHHHHhcCCCC-CCHHHHHHHHHHHHHhcCCcEEEEecCCCCC
Confidence 6999999999999999999999988 589999999999998877778 9999999999994 6776543 368888
Q ss_pred chHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC----eEEEecc---cCC--CChHHHHHHHHH
Q 023135 98 VTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG----KFKETKR---TDG--ISTSDLIMRIVK 158 (287)
Q Consensus 98 ~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G----~~~~~~r---T~g--iSTS~II~RI~~ 158 (287)
++.. ..++|++|.+.+...+ +..+-+..++.| .++.++. .+| +|||.|++.-+.
T Consensus 79 pt~~---~~~~d~IVVS~ET~~~----~~~IN~~R~e~Gl~pleIv~I~~v~~~d~~~iSSTrIr~~eid 141 (322)
T PRK01170 79 NTLY---EEDYEIIVVSPETYQR----ALKINEIRIKNGLPPLKIVRVPYVLAEDLFPISSTRIINGEID 141 (322)
T ss_pred CCcc---cCCCCEEEEecccccc----HHHHHHHHHHCCCCceEEEEEEeEEcCCCCcccHHHHhhhhcc
Confidence 6542 4689999999866542 344555667777 3444442 455 699999876443
No 22
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.70 E-value=2.4e-16 Score=137.57 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=91.5
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCCc-cc--ccCCCCCc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWVD-EV--IPDAPWVV 98 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VD-eV--vi~~p~~~ 98 (287)
++++.|+|||||.||+.++++|++.| |+|||||.++... +|.++.++.+||++|++ +++.++ .. +++.|-.-
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~--D~lii~i~s~~~~--~k~~~p~~~~eR~~mi~~al~~~~~~~~~~vP~~d~~ 76 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV--DELIIGIGSAQES--HTLENPFTAGERILMITQSLKEVGDLTYYIIPIEDIE 76 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCCCC--CCCCCCCCHHHHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 47899999999999999999999997 8999999988753 34556778899999995 667774 31 21212111
Q ss_pred hHHHHhhc------CCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEec---ccCCCChHHHHHHHHHh
Q 023135 99 TQDFLDKH------QIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETK---RTDGISTSDLIMRIVKD 159 (287)
Q Consensus 99 t~efl~~~------~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~---rT~giSTS~II~RI~~~ 159 (287)
..+...++ ++|+|+.|. + -....+++.| ++..+| |+ ++|+|.|+++|..+
T Consensus 77 ~~~~w~~~v~~~~p~~D~vf~~~-~---------~~~~~f~e~g~~v~~~p~~~r~-~~S~T~IR~~i~~~ 136 (165)
T TIGR01527 77 RNSIWVSYVESMTPPFDVVYSNN-P---------LVRRLFKEAGYEVKRPPMFNRK-EYSGTEIRRRMLNG 136 (165)
T ss_pred HHHHHHHHHHHhCCCCCEEEECC-H---------HHHHHHHHcCCEEEECCCcCCC-cccHHHHHHHHHcC
Confidence 33445555 789999883 2 2356788899 777777 87 99999999999773
No 23
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.69 E-value=3e-17 Score=134.23 Aligned_cols=126 Identities=26% Similarity=0.306 Sum_probs=89.8
Q ss_pred EEcCccCcCCHHHHHHHHHHhccCCCCE-EEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcc--------------
Q 023135 25 YADGIYDLFHFGHARALEQAKKLFPNTY-LLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDE-------------- 89 (287)
Q Consensus 25 y~~G~FDlfH~GHi~~L~qAk~lf~gd~-LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDe-------------- 89 (287)
+++|+|||+|.||+.+|++|++.+ +. +||+|.++...++.+ ++++|.++|+++|+.+..++.
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~--~~~~vi~v~~~~~~~k~~-~~~~~~~~R~~ml~~~~~~~~~i~v~~~e~~~~~~ 77 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELF--DEDLVIVVPSDNSPHKDK-KPIFSFEERLEMLRAAFKDDPNIEVDDWELEQDKK 77 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHS--SESEEEEEEEEHHCHSTT-SSSSTHHHHHHHHHHHHTTCTTEEEEEEHHHSSHH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhc--cccccccccccccccccc-cccCcHHHHHHHHHHHHhhcCCccccchhHHhHhh
Confidence 589999999999999999999997 43 588888887765432 489999999999998877766
Q ss_pred --------cccCCC-------CCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHH
Q 023135 90 --------VIPDAP-------WVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLI 153 (287)
Q Consensus 90 --------Vvi~~p-------~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II 153 (287)
++++.. |.-..+++..+++.++.++.++.... .....+......+ .++....+..||||+|+
T Consensus 78 ~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iSST~IR 155 (157)
T PF01467_consen 78 KYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIET--ISDDEILEKYPLGIIFILDPPRNEISSTEIR 155 (157)
T ss_dssp HSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEE--EEHCHHHHHTTCEEEEEEEGGGTTSSHHHHH
T ss_pred hccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccch--hhhccccccccceeEEEecCCCCccCHHHHh
Confidence 566666 66677899999999999885432211 0122343344444 45556677789999998
Q ss_pred HH
Q 023135 154 MR 155 (287)
Q Consensus 154 ~R 155 (287)
+|
T Consensus 156 ~~ 157 (157)
T PF01467_consen 156 ER 157 (157)
T ss_dssp HH
T ss_pred cC
Confidence 76
No 24
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.66 E-value=5.9e-16 Score=126.14 Aligned_cols=128 Identities=20% Similarity=0.179 Sum_probs=92.4
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccC-Cccccc-CCC---CC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRW-VDEVIP-DAP---WV 97 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~-VDeVvi-~~p---~~ 97 (287)
+|++.|+|||+|.||+.+|++|++.+ ++.|+|++++++.... +.++.++.++|+++++++.. ++.|++ +.+ ..
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~-~~~~~v~~~~~~~~~~-~~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~ 78 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEA-LDEVIIIIVSNPPKKK-RNKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKIL 78 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHc-CCceEEEEcCCChhhc-ccccCCCHHHHHHHHHHhccCCcEEEEEecChhhcc
Confidence 47899999999999999999999996 5899999999875442 23579999999999999875 677764 221 11
Q ss_pred chH----HHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhc--C-eEEEeccc---CCCChHHHHHH
Q 023135 98 VTQ----DFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSI--G-KFKETKRT---DGISTSDLIMR 155 (287)
Q Consensus 98 ~t~----efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~--G-~~~~~~rT---~giSTS~II~R 155 (287)
.+. ..+..++++++++|.+...+....++ ..+++. + .++..+|. ..||||.|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~---~~~~~~~~~~~vv~~~~~~~~~~iSSt~IR~~ 143 (143)
T cd02039 79 LAVVFILKILLKVGPDKVVVGEDFAFGKNASYN---KDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143 (143)
T ss_pred CHHHHHHHHHHHcCCcEEEECCccccCCchhhh---HHHHHhCCceEEEeeEecCCCcEEehHHhhcC
Confidence 121 34556799999999987764322111 233333 3 56666776 57999999753
No 25
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.63 E-value=2.5e-15 Score=128.55 Aligned_cols=126 Identities=21% Similarity=0.166 Sum_probs=94.1
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCchHH
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPWVVTQD 101 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~~~t~e 101 (287)
+++++|+|||+|.||+.++++|++.+ +.|+|++++++ .| .+.++.++|++|++. ++.++.+.+..-...|.+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~--d~v~v~~~~~~----~k-~~~~~~~~R~~ml~~a~~~~~~~~v~~~es~t~~ 73 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF--DEVIVAVAVNP----SK-KPLFSLEERVELIREATKHLPNVEVDGFDGLLVD 73 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHHcCCCCEEecCCcchHHH
Confidence 36899999999999999999999996 89999999875 24 478999999999996 788888877443346889
Q ss_pred HHhhcCCCEEEeCCCcccCCCCCCccHHHHH--HhcC----eEEEecccC---CCChHHHHHHHHHh
Q 023135 102 FLDKHQIDYVAHDSLPYADATGSGKDVYEFV--KSIG----KFKETKRTD---GISTSDLIMRIVKD 159 (287)
Q Consensus 102 fl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~l--K~~G----~~~~~~rT~---giSTS~II~RI~~~ 159 (287)
+++.++.+++++|.+...++ +.....+ .+.| ..+.+..++ .+|||.|++++...
T Consensus 74 ~l~~l~~~~~i~G~d~~~~~----e~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~~~~g 136 (153)
T cd02163 74 FARKHGANVIVRGLRAVSDF----EYEFQMAGMNRKLAPEIETVFLMASPEYSFISSSLVKEIARFG 136 (153)
T ss_pred HHHHcCCCEEEECCcchhhH----HHHHHHHHhCCCCCCCCcEEEEeCCCccceecHHHHHHHHHcC
Confidence 99999999999997655543 1122211 1112 112333343 59999999888654
No 26
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.61 E-value=7.6e-15 Score=128.27 Aligned_cols=135 Identities=19% Similarity=0.176 Sum_probs=95.5
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCC-CCEEEEEEecCcccc----ccC-CCCCCCHHHHHHHHHhccCCcccccCCCCC
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFP-NTYLLVGCNNDEDTH----KYK-GKTVMTDKERYESLRHCRWVDEVIPDAPWV 97 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~-gd~LIVGV~sD~~~~----~~K-grpv~s~eER~e~V~~~k~VDeVvi~~p~~ 97 (287)
|++-|+||++|.||.++|++|++++. ....+|.|+-|+... ..+ ..|++|.++|+++++++. ||.|++- |+.
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~-vd~v~~~-~f~ 79 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLG-VDYLLVL-PFD 79 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcC-CCEEEEe-CCC
Confidence 78999999999999999999999842 123555565554332 112 247999999999999997 9999862 221
Q ss_pred ------chHHHHhhc----CCCEEEeCCCcccCCC--CCCccHHHHHHhcC-eEEEecc----cCCCChHHHHHHHHHhh
Q 023135 98 ------VTQDFLDKH----QIDYVAHDSLPYADAT--GSGKDVYEFVKSIG-KFKETKR----TDGISTSDLIMRIVKDY 160 (287)
Q Consensus 98 ------~t~efl~~~----~iD~Vv~G~d~y~~~~--g~~~d~y~~lK~~G-~~~~~~r----T~giSTS~II~RI~~~y 160 (287)
...+|++.+ +++.+|.|.|+..+.. |+.+.+.+.++++| .+..+++ +..||||.|++.|.+--
T Consensus 80 ~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~~g~~v~~v~~~~~~~~~iSST~IR~~i~~G~ 159 (180)
T cd02064 80 KEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKKYGFEVTVVPPVTLDGERVSSTRIREALAEGD 159 (180)
T ss_pred HHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhhcCcEEEEeCcEecCCcEEcHHHHHHHHHhCC
Confidence 234555543 7999999998865432 22234555667778 6777765 47899999988875543
No 27
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.58 E-value=2.6e-14 Score=122.38 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=87.2
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cCCcccccCCCCCchHH
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RWVDEVIPDAPWVVTQD 101 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~VDeVvi~~p~~~t~e 101 (287)
+++++|+|||+|.||++++++|++.| |.|+|+++.++ .| .+..|.++|++|++.+ ...+.+.+..--..|.+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~--d~v~~~~~~~p----~k-~~~~~~~~R~~m~~~a~~~~~~~~v~~~e~yt~d 73 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF--DEVIVAVAKNP----SK-KPLFSLEERVELIKDATKHLPNVRVDVFDGLLVD 73 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC--CEEEEEEcCCC----CC-CCCcCHHHHHHHHHHHHhhCCCeEEcCccchHHH
Confidence 47899999999999999999999996 89999998654 34 3788999999999965 33333333111135889
Q ss_pred HHhhcCCCEEEeCCCcccCCCCCCccHHHHHH---h--cC-eEEEecccC---CCChHHHHHHHHHh
Q 023135 102 FLDKHQIDYVAHDSLPYADATGSGKDVYEFVK---S--IG-KFKETKRTD---GISTSDLIMRIVKD 159 (287)
Q Consensus 102 fl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK---~--~G-~~~~~~rT~---giSTS~II~RI~~~ 159 (287)
.++.+++++++.|.+.+.++. ...+.+. . .+ ..+.+..++ .+|||.|++++...
T Consensus 74 t~~~l~~~~~i~G~~~~~~~~----~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~g 136 (155)
T TIGR01510 74 YAKELGATFIVRGLRAATDFE----YELQMALMNKHLAPEIETVFLMASPEYAFVSSSLVKEIASFG 136 (155)
T ss_pred HHHHcCCCEEEecCcchhhHH----HHHHHHhhCcccccCCcEEEEeCCcchhhccHHHHHHHHHcC
Confidence 999999999999976555431 1111111 0 01 112332343 79999999888654
No 28
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.56 E-value=3.9e-14 Score=120.93 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=74.4
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCC-CCCc
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDA-PWVV 98 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~-p~~~ 98 (287)
|++++++|+|||+|.||+.++++|.++| |.|+|+++.++ .| .+.+|.++|+++++. ++....|.+.. .-++
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~--D~v~v~v~~np----~K-~~~~s~e~R~~~l~~~~~~~~~v~v~~~~~~l 73 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF--DKVYVVVSINP----DK-SNASDLDSRFKNVKNKLKDFKNVEVLINENKL 73 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC--CEEEEEeccCC----CC-CCCCCHHHHHHHHHHHHcCCCCcEEecCcCCc
Confidence 3579999999999999999999999997 89999999875 34 378999999999974 55555554432 2368
Q ss_pred hHHHHhhcCCCEEEeCCCc
Q 023135 99 TQDFLDKHQIDYVAHDSLP 117 (287)
Q Consensus 99 t~efl~~~~iD~Vv~G~d~ 117 (287)
+.+++++++++++++|...
T Consensus 74 ~v~~~~~~~a~~ivrGlR~ 92 (140)
T PRK13964 74 TAEIAKKLGANFLIRSARN 92 (140)
T ss_pred HHHHHHHCCCeEEEEecCC
Confidence 8999999999999999854
No 29
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.56 E-value=1.1e-14 Score=126.25 Aligned_cols=91 Identities=19% Similarity=0.184 Sum_probs=78.3
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~~~t 99 (287)
+++++++|+|||+|+||++++++|.++| |.|||||..++ .| +|.+|.+||.++++. .+..+.|-+..--++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F--d~viVaV~~np----~K-~plFsleER~~l~~~~~~~l~nV~V~~f~~Ll 74 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF--DEVIVAVAINP----SK-KPLFSLEERVELIREATKHLPNVEVVGFSGLL 74 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc--cEEEEEEEeCC----Cc-CCCcCHHHHHHHHHHHhcCCCceEEEecccHH
Confidence 5689999999999999999999999999 89999999887 34 799999999999995 4566666554444689
Q ss_pred HHHHhhcCCCEEEeCCCcc
Q 023135 100 QDFLDKHQIDYVAHDSLPY 118 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y 118 (287)
+++.+++++.++++|.-..
T Consensus 75 vd~ak~~~a~~ivRGLR~~ 93 (159)
T COG0669 75 VDYAKKLGATVLVRGLRAV 93 (159)
T ss_pred HHHHHHcCCCEEEEecccc
Confidence 9999999999999998543
No 30
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.56 E-value=9.4e-15 Score=106.62 Aligned_cols=65 Identities=43% Similarity=0.685 Sum_probs=58.7
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDE 89 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDe 89 (287)
++++.|+|||+|.||+.+|++|++.+ +.++|+|.+|+.....|+.|+++.++|.++++.|.+++.
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~--~~~vv~i~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 65 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF--DELIVGVGSDQFVNPLKGEPVFSLEERLEMLKALKYVDE 65 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC--CEEEEEECchHhccccCCCCCCCHHHHHHHHHHhccccC
Confidence 48999999999999999999999996 489999999888877775699999999999999988764
No 31
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.55 E-value=3.8e-14 Score=122.72 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=86.1
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCCc----cc--cc-CC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWVD----EV--IP-DA 94 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VD----eV--vi-~~ 94 (287)
++++.|+|||||.||+.++++|++.| +.|+|+|+++...+ +....++.++|++|++ +++.+| .| ++ .+
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~--d~l~v~v~s~~~~~--~~~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV--DELIIGIGSAQESH--TLENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEecCCCCCC--CCCCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 36899999999999999999999997 89999998766443 3345688999999999 667765 33 22 22
Q ss_pred CCCchHHHHhhc------CCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEeccc--CCCChHHHHHHHH
Q 023135 95 PWVVTQDFLDKH------QIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRT--DGISTSDLIMRIV 157 (287)
Q Consensus 95 p~~~t~efl~~~------~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT--~giSTS~II~RI~ 157 (287)
+ .. .+...++ .+|+++.|..++ -+.+.+.| .++.++++ .++|+|.|++.|.
T Consensus 77 ~-~~-~~~w~~~v~~~vp~~div~~g~~~~----------~~~f~~~g~~v~~~p~~~~~~~s~t~iR~~~~ 136 (163)
T cd02166 77 I-ER-NSLWVSYVESLTPPFDVVYSGNPLV----------ARLFKEAGYEVRRPPMFNREEYSGTEIRRLML 136 (163)
T ss_pred C-Cc-hHHHHHHHHHHCCCCCEEEECchHH----------HHhhhhcCCeEecCCcccCCCCCHHHHHHHHH
Confidence 2 22 2333333 679888875222 23566788 55677874 5899999998875
No 32
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.49 E-value=5.4e-13 Score=126.43 Aligned_cols=144 Identities=17% Similarity=0.166 Sum_probs=97.8
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEE---EEEEecCccccc----cC-CCCCCCHHHHHHHHHhccCCcccccCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYL---LVGCNNDEDTHK----YK-GKTVMTDKERYESLRHCRWVDEVIPDA 94 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~L---IVGV~sD~~~~~----~K-grpv~s~eER~e~V~~~k~VDeVvi~~ 94 (287)
.|++-|+||.+|.||.++|++|++++ +.+ .|.++-|+.... .+ .++++|.+||.+.+++|. ||.+++ -
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a--~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~g-VD~~~~-~ 90 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIA--RERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELG-VDYVLV-L 90 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHH--HhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcC-CCEEEE-e
Confidence 69999999999999999999999874 333 234555553321 12 247999999999999997 999986 3
Q ss_pred CCC------chHHHHhh-----cCCCEEEeCCCcccCCC--CCCccHHHHHHhcC-eEEEecc----cCCCChHHHHHHH
Q 023135 95 PWV------VTQDFLDK-----HQIDYVAHDSLPYADAT--GSGKDVYEFVKSIG-KFKETKR----TDGISTSDLIMRI 156 (287)
Q Consensus 95 p~~------~t~efl~~-----~~iD~Vv~G~d~y~~~~--g~~~d~y~~lK~~G-~~~~~~r----T~giSTS~II~RI 156 (287)
|+. ...+|+++ ++++.+++|.|+-.+.. |+.+.+-+.+++.| .+..++. ...||||.|++.|
T Consensus 91 ~F~~~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISST~IR~~I 170 (305)
T PRK05627 91 PFDEEFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRFGKKRAGDFELLKEAGKEFGFEVTIVPEVKEDGERVSSTAIRQAL 170 (305)
T ss_pred cCCHHHhcCCHHHHHHHHHHhccCCCEEEECCCCCCCCCCCCCHHHHHHHHHHcCcEEEEeccEecCCCcCchHHHHHHH
Confidence 332 24567764 79999999998754322 22223344455566 5555543 5789999998887
Q ss_pred HHhhHHHHHHHhhc
Q 023135 157 VKDYNQYVTRNLDR 170 (287)
Q Consensus 157 ~~~yd~y~~Rnl~r 170 (287)
..--=.-..+-|-|
T Consensus 171 ~~G~i~~A~~lLg~ 184 (305)
T PRK05627 171 AEGDLELANKLLGR 184 (305)
T ss_pred HcCCHHHHHhhhcC
Confidence 55333333343433
No 33
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.46 E-value=1.9e-13 Score=116.77 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=85.2
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHHhc-cCC------cccccCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLRHC-RWV------DEVIPDA 94 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~~~-k~V------DeVvi~~ 94 (287)
+|+++|+||++|.||..+|.+|..++ +++++|||++|+.....+. .+++|.++|+++|+.+ ... .-+-+.+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~-~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d 79 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLA-GEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDD 79 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHh-cCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Confidence 38899999999999999999999997 3789999999985543222 2589999999999965 221 1223578
Q ss_pred CCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHH-HhcC----eEEEecc------cCCCChHHHHH
Q 023135 95 PWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFV-KSIG----KFKETKR------TDGISTSDLIM 154 (287)
Q Consensus 95 p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~l-K~~G----~~~~~~r------T~giSTS~II~ 154 (287)
|++++.. .-.+|++|.....+.+ ....... ++.| .++.++. ..-+|||.|++
T Consensus 80 ~~Gpt~~---~~~~d~lVVS~ET~~~-----~~~iN~~R~~~gl~pl~i~~v~~v~~~~~~~kiSST~iR~ 142 (143)
T cd02164 80 PYGPTGT---DPDLEAIVVSPETYPG-----ALKINRKREENGLSPLEIVVVPLVKADEDGEKISSTRIRR 142 (143)
T ss_pred CCCCccc---CCCCCEEEEcHHHhhh-----HHHHHHHHHHCCCCceeEEEEEeeccCCCCCeecchhhhC
Confidence 8887643 2478999998755442 2223333 3345 3333332 34599999864
No 34
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.38 E-value=1.8e-12 Score=112.13 Aligned_cols=126 Identities=20% Similarity=0.259 Sum_probs=92.4
Q ss_pred CCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc----cCC-ccc-cc
Q 023135 19 DRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC----RWV-DEV-IP 92 (287)
Q Consensus 19 ~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~----k~V-DeV-vi 92 (287)
.++..|.++||||.+|.||-.+|..|..+ |+.+++||+||++++++|..++.|++.|++.|... +.- .+| -+
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~--G~~v~IGlTsDe~~k~~k~~~i~p~~~R~~~l~~fl~~~~~~~~~iv~i 80 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEI--GDRVTIGLTSDELAKKKKKEKIEPYEVRLRNLRNFLESIKADYEEIVPI 80 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHh--CCeEEEEEccHHHHHHhccccCCcHHHHHHHHHHHHHHhcCCcceEEEe
Confidence 35568999999999999999999999998 57999999999999988878999999999988753 111 123 35
Q ss_pred CCCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHH-HhcC----eEEEecc-----cCCCChHHHHH
Q 023135 93 DAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFV-KSIG----KFKETKR-----TDGISTSDLIM 154 (287)
Q Consensus 93 ~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~l-K~~G----~~~~~~r-----T~giSTS~II~ 154 (287)
++|++.|.+ .-.+|++|.....|.. .-..... .+.| .++.++. .--+|||.|+.
T Consensus 81 ~Dp~G~t~~---~~~~e~iVVS~ET~~~-----Al~IN~~R~~~Gl~pL~I~~i~~v~aedg~~iSSTrIrr 144 (158)
T COG1019 81 DDPYGPTVE---DPDFEAIVVSPETYPG-----ALKINEIREKRGLPPLEIIVIDYVLAEDGKPISSTRIRR 144 (158)
T ss_pred cCCCCCCCC---cCceeEEEEccccchh-----HHHHHHHHHHCCCCCeEEEEEehhhhhcCCccchhhhhh
Confidence 899998654 2367899988766543 2223333 3456 3444442 23689998864
No 35
>PRK07143 hypothetical protein; Provisional
Probab=99.37 E-value=1.9e-11 Score=114.81 Aligned_cols=157 Identities=17% Similarity=0.118 Sum_probs=107.1
Q ss_pred cccccCCCCCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCcccc-ccCCCCCCCHHHHHHHHHhc
Q 023135 6 VVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTH-KYKGKTVMTDKERYESLRHC 84 (287)
Q Consensus 6 ~~~~~~~~~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~-~~Kgrpv~s~eER~e~V~~~ 84 (287)
|.-+.|+. ++...++ .|++-|.||-+|.||..+|++|++. +..++|.+.+++... ..+..+++|.++|++.+++|
T Consensus 2 ~~~~~~~~-~~~~~~~-~vvaiG~FDGvH~GHq~Ll~~a~~~--~~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~ 77 (279)
T PRK07143 2 MKVYTFPL-KNFKFEK-PTFVLGGFESFHLGHLELFKKAKES--NDEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL 77 (279)
T ss_pred ceEEecCC-CCCCCCC-eEEEEccCCcCCHHHHHHHHHHHHC--CCcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC
Confidence 44555665 4444555 5899999999999999999999987 578888887765432 11223599999999999998
Q ss_pred cCCcccccCCCCC------chHHHHhh---cCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEec----ccCCCChH
Q 023135 85 RWVDEVIPDAPWV------VTQDFLDK---HQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETK----RTDGISTS 150 (287)
Q Consensus 85 k~VDeVvi~~p~~------~t~efl~~---~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~----rT~giSTS 150 (287)
.||.+++ .|+. ...+|++. .+++.||.|.|.-.+..+.++ .+.|++.+ .+..++ ....||||
T Consensus 78 -Gvd~~~~-~~F~~~~a~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~~r~G~--~~~L~~~~~~v~~v~~~~~~g~~ISST 153 (279)
T PRK07143 78 -GFKNIIL-LDFNEELQNLSGNDFIEKLTKNQVSFFVVGKDFRFGKNASWN--ADDLKEYFPNVHIVEILKINQQKISTS 153 (279)
T ss_pred -CCCEEEE-eCCCHHHhCCCHHHHHHHHHhcCCCEEEECCCcccCCCCCCC--HHHHHHhCCcEEEeCCEEcCCcEEcHH
Confidence 5687765 2221 24567665 789999999987655333333 56788877 555554 24569999
Q ss_pred HHHHHHHHhhHHHHHHHhhc
Q 023135 151 DLIMRIVKDYNQYVTRNLDR 170 (287)
Q Consensus 151 ~II~RI~~~yd~y~~Rnl~r 170 (287)
.|++-|.+--=.-..+-|-|
T Consensus 154 ~IR~~l~~G~i~~A~~lLGr 173 (279)
T PRK07143 154 LLKEFIEFGDIELLNSLLLY 173 (279)
T ss_pred HHHHHHHcCCHHHHHHHcCC
Confidence 99776644332333444443
No 36
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.34 E-value=1.1e-11 Score=108.84 Aligned_cols=122 Identities=17% Similarity=0.288 Sum_probs=81.9
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cC--C--cccc-cCCC-
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RW--V--DEVI-PDAP- 95 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~--V--DeVv-i~~p- 95 (287)
++++.|+|||||.||+.++++|.+.| +.|+|+|++.... .+.+..++.++|++|++.. .. + +.+. ++-|
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~--d~v~v~i~s~~~~--~~~~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV--DELIIGIGSAQES--HTLKNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC--CEEEEEecCCCCC--CCCCCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 68999999999999999999999986 8999999764322 2224568999999999953 32 2 1222 2212
Q ss_pred CCchH---HHHhhc--CCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEec--ccCCCChHHHHHHHHH
Q 023135 96 WVVTQ---DFLDKH--QIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETK--RTDGISTSDLIMRIVK 158 (287)
Q Consensus 96 ~~~t~---efl~~~--~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~--rT~giSTS~II~RI~~ 158 (287)
..... ..+... .+|+++.|. +| +.+.+.+.| .++.++ +..++|+|+|+++|.+
T Consensus 78 ~~~~~~w~~~v~~~~~~~d~v~~~~-~y---------~~~~f~~~g~~v~~~p~~~~~~iSsT~IR~~i~~ 138 (174)
T PRK01153 78 IEFNSIWVSHVESYTPPFDVVYTGN-PL---------VARLFREAGYEVRQPPMFNREEYSGTEIRRRMIE 138 (174)
T ss_pred cchHHHHHHHHHHhCCCCCEEEECC-hH---------HHHhchhhCCeEecCCccccCCCCHHHHHHHHHc
Confidence 11122 222222 568888774 21 234456778 556666 6679999999999854
No 37
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.33 E-value=3.2e-12 Score=112.88 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=80.2
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cC--Cc--cccc----C-
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RW--VD--EVIP----D- 93 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~--VD--eVvi----~- 93 (287)
+++.|+|||||.||+.++++|.+.| ++|||+|++....+ .+ ++.++.+||++|++.+ .. +| .|.+ +
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~--~~vii~i~s~~~~~-~~-~~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D~ 77 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKA--KKVIILIGSARTAR-NI-KNPWTSEEREVMIEAALSDAGADLARVHFRPLRDH 77 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHC--CeEEEEeCCCCCCC-CC-CCCcCHHHHHHHHHHHHhccCCCcceEEEEecCCC
Confidence 5789999999999999999999997 59999998765432 23 3568999999999974 32 12 2221 1
Q ss_pred ----CCCCc-----hHHHHhhcCCCEEEeCCCcccCCCCCCccHH-HHHHhcCeEEEecccCCCChHHHHHHHHH
Q 023135 94 ----APWVV-----TQDFLDKHQIDYVAHDSLPYADATGSGKDVY-EFVKSIGKFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 94 ----~p~~~-----t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y-~~lK~~G~~~~~~rT~giSTS~II~RI~~ 158 (287)
..|.- .+.+ -..++|+++.|.+... +..| ..+.+.|. +.++..+++|+|.|++++..
T Consensus 78 ~~~~~~W~~~v~~~v~~~-~~~~~~i~~~g~~kd~------~~~~~~lfpe~~~-~~~p~~~~iSsT~IR~~i~~ 144 (181)
T cd02168 78 LYSDNLWLAEVQQQVLEI-AGGSASVGLVGHRKDA------SSYYLRSFPQWDY-LEVPNYPDLNATDIRRAYFE 144 (181)
T ss_pred CCChHHHHHHHHHhChHh-hCCCCcEEEeCCccCC------CccceeecCCcCe-ecCccccccCHHHHHHHHHh
Confidence 11321 1111 1236688888854321 1112 22233343 35666789999999998865
No 38
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.32 E-value=9.2e-12 Score=119.18 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=87.3
Q ss_pred CCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cCCc--ccc-c---
Q 023135 20 RPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RWVD--EVI-P--- 92 (287)
Q Consensus 20 r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~VD--eVv-i--- 92 (287)
+..++++.|+|||||.||+.++++|++.| +.|||+|++....+.. +..++.++|++|++.+ +.++ .|. +
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~--d~l~v~i~s~~~~~~~--~~~~~~~~R~~mi~~~~~~~~~~r~~~~pi~ 80 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRA--KKVIVLIGSADLARSI--KNPFSFEERAQMIRAALAGIDLARVTIRPLR 80 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEEccCCCCCcC--CCCCCHHHHHHHHHHHhhcCCCceEEEEECC
Confidence 45689999999999999999999999997 8999999875433332 2458999999999965 5443 222 1
Q ss_pred CC-----CCCch-HHHHh---hcCCCEEEeCCCcccCCCCCCccHHH-HHHhcCeEEEecccCCCChHHHHHHHHH
Q 023135 93 DA-----PWVVT-QDFLD---KHQIDYVAHDSLPYADATGSGKDVYE-FVKSIGKFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 93 ~~-----p~~~t-~efl~---~~~iD~Vv~G~d~y~~~~g~~~d~y~-~lK~~G~~~~~~rT~giSTS~II~RI~~ 158 (287)
+. .|... ...+. ..++|+++.|.+.. .+..|- .+.+.|.. .++.++++|+|+|+++++.
T Consensus 81 d~~~~~~~W~~~v~~~v~~~~~~~~~~~~~g~~~~------~~~~~~~~f~~~~~~-~~~~~~~~s~T~iR~~~~~ 149 (340)
T PRK05379 81 DSLYNDSLWLAEVQAAVAEHAGADARIGLIGHEKD------ASSYYLRSFPQWELV-DVPNTEDLSATEIRDAYFE 149 (340)
T ss_pred CCCcChHHHHHHHHHHHHhccCCCCcEEEECCcCC------CChHHHHhccccccc-cCCcccccCccHHHHHHHc
Confidence 11 13211 11111 14779999996432 123333 34455644 5677899999999999875
No 39
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.32 E-value=1.5e-11 Score=108.82 Aligned_cols=130 Identities=15% Similarity=0.136 Sum_probs=91.0
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccC-CCCCCCHHHHHHHHHhc-c---C---CcccccC
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYK-GKTVMTDKERYESLRHC-R---W---VDEVIPD 93 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~K-grpv~s~eER~e~V~~~-k---~---VDeVvi~ 93 (287)
..|++.|+||.+|.||..+|.+|..++ .+.++||+++|+.....+ ...+.|+++|.+.|... . . +.-+-+.
T Consensus 20 ~~Vv~gGtFDgLH~GHq~LL~~A~~~a-~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~~fl~~~~p~~~~~i~~i~ 98 (177)
T PLN02388 20 GAVVLGGTFDRLHDGHRLFLKAAAELA-RDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVEEYIKSIKPELVVQAEPII 98 (177)
T ss_pred CeEEEEecCCccCHHHHHHHHHHHHhh-hcCEEEecCCChhhcccCCCcccCCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 469999999999999999999999985 358999999999864422 23599999999999864 1 1 2223358
Q ss_pred CCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHH-HhcC----eEEEec---c---cCCCChHHHHHHHHHhh
Q 023135 94 APWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFV-KSIG----KFKETK---R---TDGISTSDLIMRIVKDY 160 (287)
Q Consensus 94 ~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~l-K~~G----~~~~~~---r---T~giSTS~II~RI~~~y 160 (287)
+||+++.. ..++|++|.....+.+ ....... ++.| .++.++ . ...+|||.|+++..+..
T Consensus 99 D~~Gpt~~---~~~~d~LVVS~ET~~g-----~~~IN~~R~e~Gl~pL~i~~v~~v~~~~~~~kiSST~iR~~~~~~~ 168 (177)
T PLN02388 99 DPYGPSIV---DENLEAIVVSKETLPG-----GLSVNKKRAERGLSQLKIEVVDIVPEESTGNKLSSTTLRRLEAEKA 168 (177)
T ss_pred CCCCCccc---CCCCCEEEEcHhHhhh-----HHHHHHHHHHCCCCCeEEEEEEeEecCCCCCccCHHHHHHHHHHHH
Confidence 89987643 3478999998765442 2222222 2345 233222 1 34799999998877654
No 40
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.27 E-value=5.9e-11 Score=104.25 Aligned_cols=94 Identities=17% Similarity=0.056 Sum_probs=64.8
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cCCcccccC------CC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RWVDEVIPD------AP 95 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~VDeVvi~------~p 95 (287)
+++++|+|||+|.||+.+++.|++.++.+.|+|.++.++. .|+.+..+.++|++|++.+ .....+.+. ..
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~m~~~~~~~~~~i~v~~~e~~~~~ 77 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPP---HKPPKPASFEHRLEMLKLAIEDNPKFEVSDIEIKRDG 77 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCHHHHHHHHHHHHcCCCCEEEeHHHHhCCC
Confidence 3689999999999999999999999866899998877653 3445788999999999954 443333321 11
Q ss_pred CCch---HHHHhhcCC--C-EEEeCCCccc
Q 023135 96 WVVT---QDFLDKHQI--D-YVAHDSLPYA 119 (287)
Q Consensus 96 ~~~t---~efl~~~~i--D-~Vv~G~d~y~ 119 (287)
...| .+.+++.-| + +++.|.|...
T Consensus 78 ~~~t~~tl~~l~~~~p~~~~~~liG~D~l~ 107 (192)
T cd02165 78 PSYTIDTLEELRERYPNAELYFIIGSDNLI 107 (192)
T ss_pred CCCHHHHHHHHHHhccCCCEEEEEcHHHhh
Confidence 1223 344444334 3 5667876544
No 41
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.26 E-value=6.6e-11 Score=102.24 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=84.0
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc------CCC-
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP------DAP- 95 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi------~~p- 95 (287)
+++.|+|||+|.||+.++++|.+.+ |.|+|++++....+ ..++.+|.++|++|++. ++.-+.+.+ +.|
T Consensus 2 gl~~G~F~P~H~GHl~li~~a~~~~--d~v~vi~~~~~~~~--~~~~~~~~~~R~~mi~~a~~~~~~~~v~~~~~~d~~~ 77 (158)
T cd02167 2 GIVFGKFAPLHTGHVYLIYKALSQV--DELLIIVGSDDTRD--DARTGLPLEKRLRWLREIFPDQENIVVHTLNEPDIPE 77 (158)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccc--ccCCCCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCC
Confidence 5789999999999999999999996 89999999876322 12568899999999995 454233321 223
Q ss_pred ----CCchH----HHHhhc---CCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEe--cc-cCCCChHHHHHHHHHhh
Q 023135 96 ----WVVTQ----DFLDKH---QIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKET--KR-TDGISTSDLIMRIVKDY 160 (287)
Q Consensus 96 ----~~~t~----efl~~~---~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~--~r-T~giSTS~II~RI~~~y 160 (287)
|..-. ..+.+. ++|+++.|.. |.. ..+-.....| .+..+ .| ...+|.|.|++...+.|
T Consensus 78 ~~~~w~~w~~~v~~~v~~~~~~~~~~vf~~~~-~~~------~~~~~~~~~~~~~~~v~~~r~~~~iSaT~IR~~p~~~w 150 (158)
T cd02167 78 YPNGWDIWSNRVKTLIAENTRCRPDIVFTAEE-YEA------AFELVLAYLGAQVVLVDPDRTDISVSATQIRENPFRYW 150 (158)
T ss_pred CchhHHHHHHHHHHHHhhhcCCCCCEEEEccC-cch------hhhhHhhcCCCeEEEeccccccCCcCHHHHHhCHHHHH
Confidence 31111 222222 6788888853 321 1221234455 44443 34 56899999999888777
Q ss_pred H
Q 023135 161 N 161 (287)
Q Consensus 161 d 161 (287)
+
T Consensus 151 ~ 151 (158)
T cd02167 151 Y 151 (158)
T ss_pred H
Confidence 4
No 42
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.25 E-value=1.4e-10 Score=103.04 Aligned_cols=97 Identities=16% Similarity=0.048 Sum_probs=67.8
Q ss_pred CCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHHh-ccCCccccc-----
Q 023135 20 RPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLRH-CRWVDEVIP----- 92 (287)
Q Consensus 20 r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~~-~k~VDeVvi----- 92 (287)
++++++++|+|||+|.||+.++++|++.++-+.+++.++.... .|. +...+.++|++|++. +...+.+.+
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~ 79 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPP---HKPQKPLAPLEHRLAMLELAIADNPRFSVSDIEL 79 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHhcCCCceEEeHHHH
Confidence 4568899999999999999999999998755788887776653 233 368899999999984 555554433
Q ss_pred ---CCCCCc-hHHHHhhcCCC---EEEeCCCccc
Q 023135 93 ---DAPWVV-TQDFLDKHQID---YVAHDSLPYA 119 (287)
Q Consensus 93 ---~~p~~~-t~efl~~~~iD---~Vv~G~d~y~ 119 (287)
...|.+ |.+.+++.-|+ +++.|.|...
T Consensus 80 ~~~~~syT~~tl~~l~~~~p~~~~~fiiG~D~l~ 113 (203)
T PRK00071 80 ERPGPSYTIDTLRELRARYPDVELVFIIGADALA 113 (203)
T ss_pred hCCCCCCHHHHHHHHHHHCCCCcEEEEEcHHHhh
Confidence 122322 33444444455 6788886443
No 43
>PRK13671 hypothetical protein; Provisional
Probab=99.17 E-value=1.8e-10 Score=109.36 Aligned_cols=88 Identities=26% Similarity=0.308 Sum_probs=72.1
Q ss_pred EcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCC-CCCHHHHHHHHHhccCCccccc-CCCCCc-----
Q 023135 26 ADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKT-VMTDKERYESLRHCRWVDEVIP-DAPWVV----- 98 (287)
Q Consensus 26 ~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrp-v~s~eER~e~V~~~k~VDeVvi-~~p~~~----- 98 (287)
+--+|||||.||+.++++|++.++.|.+|+..+.+. + .||.| +++.++|++|+..| .||-|+. +.+|.+
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~-~--qrg~pa~~~~~~R~~ma~~~-G~DLViELP~~~a~~sAe~ 80 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKY-T--QRGEIAVASFEKRKKIALKY-GVDKVIKLPFEYATQAAHI 80 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCC-C--CCCCCCCCCHHHHHHHHHHc-CCCEEEeccHHHHhhchHH
Confidence 345899999999999999999988888888777776 3 35655 66999999999998 8999984 444443
Q ss_pred ----hHHHHhhcCCCEEEeCCCc
Q 023135 99 ----TQDFLDKHQIDYVAHDSLP 117 (287)
Q Consensus 99 ----t~efl~~~~iD~Vv~G~d~ 117 (287)
.+..|.+.++|.++.|...
T Consensus 81 FA~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 81 FAKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHHcCCCEEEECCCC
Confidence 4688899999999999853
No 44
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.15 E-value=1.1e-09 Score=104.65 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=85.5
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCC-CCCCHHHHHHHHH-hccCCccccc------
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGK-TVMTDKERYESLR-HCRWVDEVIP------ 92 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgr-pv~s~eER~e~V~-~~k~VDeVvi------ 92 (287)
|++++++|+|||+|.||+.++++|.+.++-+.|++..+.++- .|.. +..+.+.|++|++ ++...+.+.+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p---~K~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~ 77 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINP---FKKKQKASNGEHRLNMLKLALKNLPKMEVSDFEIK 77 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhhCCCeEEeHHHHh
Confidence 457899999999999999999999987655888887766542 3433 4556699999997 4444333332
Q ss_pred -C-CCCCc-hHHHHhhcCCC---EEEeCCCcccCCCCCCccHHHHHHhcCeEEEeccc--------------------CC
Q 023135 93 -D-APWVV-TQDFLDKHQID---YVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRT--------------------DG 146 (287)
Q Consensus 93 -~-~p~~~-t~efl~~~~iD---~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT--------------------~g 146 (287)
+ ..|++ |.+.+++.-|+ +++.|.|...... ...+ ++.+-+.-.|+.++|. ..
T Consensus 78 ~~~~syt~~tl~~l~~~~p~~~~~~iiG~D~~~~l~-~W~~-~~~l~~~~~~iv~~R~g~~~~~~~~~~~i~~~~~~~~~ 155 (342)
T PRK07152 78 RQNVSYTIDTIKYFKKKYPNDEIYFIIGSDNLEKFK-KWKN-IEEILKKVQIVVFKRKKNINKKNLKKYNVLLLKNKNLN 155 (342)
T ss_pred CCCCCcHHHHHHHHHHhCCCCcEEEEecHHHhhhcc-cccC-HHHHHHhCCEEEEECCCCCcccccccCcEEEecCCccc
Confidence 1 12332 45555554454 6788987655421 1122 3333333444455442 35
Q ss_pred CChHHHHHHHHHh
Q 023135 147 ISTSDLIMRIVKD 159 (287)
Q Consensus 147 iSTS~II~RI~~~ 159 (287)
||||+|++++.+.
T Consensus 156 iSST~IR~~~~~~ 168 (342)
T PRK07152 156 ISSTKIRKGNLLG 168 (342)
T ss_pred cCHHHHHHHHHcC
Confidence 9999999887654
No 45
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.14 E-value=6.3e-10 Score=97.45 Aligned_cols=127 Identities=11% Similarity=0.042 Sum_probs=77.4
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCC--ccccc------
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWV--DEVIP------ 92 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~V--DeVvi------ 92 (287)
++++++|+|||+|.||+.++++++ .+ |.|++..+...- .+ ++..+.++|++|++. +... ..+.+
T Consensus 3 ~i~ifGGSFDP~H~GHl~ia~~~~-~~--d~v~~vP~~~~~---~~-k~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~~ 75 (174)
T PRK08887 3 KIAVFGSAFNPPSLGHKSVIESLS-HF--DLVLLVPSIAHA---WG-KTMLDYETRCQLVDAFIQDLGLSNVQRSDIEQE 75 (174)
T ss_pred eEEEeCCCCCCCCHHHHHHHHHhh-cC--CEEEEEECCCCc---cc-CCCCCHHHHHHHHHHHHhccCCCceEEehHHhh
Confidence 478999999999999999999975 44 788887665321 12 367799999999984 3332 23332
Q ss_pred ----CCC-CCc-hHHHHhhcCC--C-EEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHH
Q 023135 93 ----DAP-WVV-TQDFLDKHQI--D-YVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIV 157 (287)
Q Consensus 93 ----~~p-~~~-t~efl~~~~i--D-~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~ 157 (287)
+.| |.+ |...+++.-+ + +++.|.|...+... ..+ ++.+-+.-.++..++...||||.|++++.
T Consensus 76 ~~~~~~~~yT~~tl~~l~~~~p~~~~~~iiG~D~l~~l~~-W~~-~~~i~~~~~l~~~~~~~~ISST~IR~~l~ 147 (174)
T PRK08887 76 LYAPDESVTTYALLTRLQELYPEADLTFVIGPDNFLKFAK-FYK-ADEITQRWTVMACPEKVPIRSTDIRNALQ 147 (174)
T ss_pred hccCCCCcchHHHHHHHHHHCCCCeEEEEEccchHHHHHH-hCC-HHHHHhhCeEEEeCCCCCcCHHHHHHHHH
Confidence 111 221 2233332113 2 35568875443210 111 33333333455567777899999998885
No 46
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.13 E-value=4e-11 Score=95.78 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=49.7
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC 84 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~ 84 (287)
++++|+||++|.||+.++++|++++ +.++|+++.++.... + .++.+.++|.++++++
T Consensus 2 ~~~~G~Fdp~H~GH~~l~~~a~~~~--d~~i~~i~~~~~~~~-~-~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEPGYLHIGHAKLICRAKGIA--DQCVVRIDDNPPVKV-W-QDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCCCCCCHHHHHHHHHHHHhC--CcEEEEEcCCCcccc-c-CChHHHHHHHHHHHHH
Confidence 7899999999999999999999997 789999998875431 2 3689999999999987
No 47
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.13 E-value=7.6e-10 Score=97.66 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=62.4
Q ss_pred EEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHH-hccCCccccc-------C-C
Q 023135 25 YADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLR-HCRWVDEVIP-------D-A 94 (287)
Q Consensus 25 y~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~-~~k~VDeVvi-------~-~ 94 (287)
+++|+|||+|.||+.++++|.+.+.-+.|++..+.++- .|. ....+.++|++|++ ++...+.+.+ . .
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p---~k~~~~~~~~~~R~~m~~~a~~~~~~~~v~~~E~~~~~~ 77 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPP---HKKTYEAASSHHRLAMLKLAIEDNPKFEVDDFEIKRGGP 77 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCC---CCCCCCCCCHHHHHHHHHHHHhcCCCEEEeHHHHhCCCC
Confidence 36899999999999999999998755778777766653 233 34579999999998 5555443332 1 2
Q ss_pred CCCc-hHHHHhhcCCC---EEEeCCCccc
Q 023135 95 PWVV-TQDFLDKHQID---YVAHDSLPYA 119 (287)
Q Consensus 95 p~~~-t~efl~~~~iD---~Vv~G~d~y~ 119 (287)
.|++ |.+.+++.-|+ +++.|.|...
T Consensus 78 syT~~tl~~l~~~~p~~~~~~iiG~D~l~ 106 (193)
T TIGR00482 78 SYTIDTLKHLKKKYPDVELYFIIGADALR 106 (193)
T ss_pred CCHHHHHHHHHHHCCCCeEEEEEcHHHhh
Confidence 2332 44555554444 5677886443
No 48
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.10 E-value=1.2e-09 Score=98.08 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=89.8
Q ss_pred CCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHH-hccCCcc-----ccc
Q 023135 20 RPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLR-HCRWVDE-----VIP 92 (287)
Q Consensus 20 r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~-~~k~VDe-----Vvi 92 (287)
.+++++++|+|||.|.||+.+.++|...++-+.|+.-.+..+- +|. ++.-|.+.|++|++ +|+.+.. ..+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p---~k~~~~~a~~~~R~~Ml~la~~~~~~~~v~~~e~ 78 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPP---HKKKKELASAEHRLAMLELAIEDNPRFEVSDREI 78 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCC---CCCCccCCCHHHHHHHHHHHHhcCCCcceeHHHH
Confidence 4678999999999999999999999998866776666555542 343 56999999999998 5665443 222
Q ss_pred ---CCCCCc-hHHHHh-hcCCCE---EEeCCCcccCCCCCCccHHHHHHhcCeEEEecccC-------------------
Q 023135 93 ---DAPWVV-TQDFLD-KHQIDY---VAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTD------------------- 145 (287)
Q Consensus 93 ---~~p~~~-t~efl~-~~~iD~---Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~------------------- 145 (287)
+..|++ |.+.++ +++||. ++.|.|...... .-. -++.+-+...|+..+|..
T Consensus 79 ~r~g~sYT~dTl~~~~~~~~p~~~~~fIiGaD~l~~l~-~W~-~~~ell~~~~~vv~~Rp~~~~~~~~~~~~~~~~~~~~ 156 (197)
T COG1057 79 KRGGPSYTIDTLEHLRQEYGPDVELYFIIGADNLASLP-KWY-DWDELLKLVTFVVAPRPGYGELELSLLSSGGAIILLD 156 (197)
T ss_pred HcCCCcchHHHHHHHHHHhCCCCcEEEEEehHHhhhhh-hhh-hHHHHHHhCCEEEEecCCchhhhhhhhcCCceEEEcc
Confidence 122332 556666 778873 677876543211 011 244555566666665532
Q ss_pred ----CCChHHHHHHHHH
Q 023135 146 ----GISTSDLIMRIVK 158 (287)
Q Consensus 146 ----giSTS~II~RI~~ 158 (287)
.||||.|+.++..
T Consensus 157 ~~~~~ISSt~IR~~~~~ 173 (197)
T COG1057 157 LPRLDISSTEIRERIRR 173 (197)
T ss_pred CccccCchHHHHHHHhC
Confidence 4888888887755
No 49
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.06 E-value=2.8e-09 Score=98.41 Aligned_cols=100 Identities=18% Similarity=0.113 Sum_probs=68.2
Q ss_pred CCCCCCe-EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCC------
Q 023135 16 PPRDRPV-RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWV------ 87 (287)
Q Consensus 16 ~~~~r~~-rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~V------ 87 (287)
+|..+|+ +++++|+|||+|.||+.+.++|.+.++-+.|++..+.++. .| .+..+.+.|++|++ +++..
T Consensus 16 ~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp---~K-~~~~~~~~Rl~M~~lAi~~~~~~~~~ 91 (243)
T PRK06973 16 PPLARPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPW---QK-ADVSAAEHRLAMTRAAAASLVLPGVT 91 (243)
T ss_pred CCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCC---CC-CCCCCHHHHHHHHHHHHHhccCCCce
Confidence 4555655 6799999999999999999999988755888888777653 24 56779999999998 34422
Q ss_pred ---ccccc---CCCCCc-hHHHHhh-cCCC---EEEeCCCccc
Q 023135 88 ---DEVIP---DAPWVV-TQDFLDK-HQID---YVAHDSLPYA 119 (287)
Q Consensus 88 ---DeVvi---~~p~~~-t~efl~~-~~iD---~Vv~G~d~y~ 119 (287)
+..-+ ...|.+ |...+++ +.++ +++.|.|.+.
T Consensus 92 ~~v~~~Ei~~~g~syTidTL~~l~~~~~p~~~~~fiiG~D~l~ 134 (243)
T PRK06973 92 VRVATDEIEHAGPTYTVDTLARWRERIGPDASLALLIGADQLV 134 (243)
T ss_pred EEEeHhhhhCCCCCcHHHHHHHHHHHcCCCCCEEEEEchhhHh
Confidence 22211 122332 3444444 3255 5778887544
No 50
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.03 E-value=1.3e-09 Score=103.88 Aligned_cols=65 Identities=17% Similarity=0.081 Sum_probs=53.1
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcc
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDE 89 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDe 89 (287)
|++++++|+|||+|.||+.++++|+++| |.|+|++++... + .|.++.+|.++|+++|+. |+....
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~--d~v~v~~~~~~~-~-~~~~~~~~~~~R~~~l~~~~~~~~~ 66 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV--DELHIVVGSLFY-D-SKAKRPPPVQDRLRWLREIFKYQKN 66 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC--CEEEEEECCCCc-C-ccCCCCCCHHHHHHHHHHHhccCCC
Confidence 3478999999999999999999999996 899999987321 1 134688999999999984 566655
No 51
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.02 E-value=2.5e-09 Score=104.91 Aligned_cols=131 Identities=15% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccc-----cccCCCCCCCHHHHHHHHHhc-cCCccccc-
Q 023135 20 RPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDT-----HKYKGKTVMTDKERYESLRHC-RWVDEVIP- 92 (287)
Q Consensus 20 r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~-----~~~Kgrpv~s~eER~e~V~~~-k~VDeVvi- 92 (287)
...++++.|+|||+|.||+.++++|.+++ +.|+|+|+++..- ...|.+..+|.++|+++|+.. +..+.|.+
T Consensus 51 ~~~~~v~~G~FdP~H~GH~~lI~~A~~~~--d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~~v~v~ 128 (399)
T PRK08099 51 MKKIGVVFGKFYPLHTGHIYLIQRACSQV--DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIKIH 128 (399)
T ss_pred cCcEEEEEEecCCCCHHHHHHHHHHHHHC--CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 34579999999999999999999999996 7888888876521 111224688999999999964 66444432
Q ss_pred --------CCC-----CCc-hHHHHhhc--CCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEec--c-cCCCChHHH
Q 023135 93 --------DAP-----WVV-TQDFLDKH--QIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETK--R-TDGISTSDL 152 (287)
Q Consensus 93 --------~~p-----~~~-t~efl~~~--~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~--r-T~giSTS~I 152 (287)
+.| |.- ...++.+. ++|+++.|.... .+-| ++..| .++.++ | .-.||.|.|
T Consensus 129 ~~~~~~~~~~~~~~~~w~~~v~~~v~~~~~~~~~vf~~~~~d-------~~~~--~~~~~~~~~~vd~~r~~~~iSaT~I 199 (399)
T PRK08099 129 AFNEEGMEPYPHGWDVWSNGIKAFMAEKGIQPDVIYTSEEQD-------APQY--EEHLGIETVLVDPKRTFMNISGTQI 199 (399)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEeCCCC-------hHHH--HHhcCCceeeeccccccCCcCHHHH
Confidence 122 110 11223322 679888885321 1223 45556 555554 4 358999999
Q ss_pred HHHHHHhhH
Q 023135 153 IMRIVKDYN 161 (287)
Q Consensus 153 I~RI~~~yd 161 (287)
++...+.|+
T Consensus 200 R~~p~~~w~ 208 (399)
T PRK08099 200 RENPFRYWE 208 (399)
T ss_pred hhCHHHHHH
Confidence 999988885
No 52
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.01 E-value=4.9e-09 Score=99.34 Aligned_cols=129 Identities=16% Similarity=0.148 Sum_probs=84.3
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc-------
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP------- 92 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi------- 92 (287)
.+++-+.|+|||+|.||++++++|.+.| +.++|.+... ..+.+|.++|++|++. ++....+.+
T Consensus 114 ~~~~~~~~~FDPiH~GHl~ii~~a~~~~--d~~~V~i~~~-------~~~~~~~e~R~~ml~~ai~~~~~v~v~~~~~l~ 184 (297)
T cd02169 114 KKIAAIVMNANPFTLGHRYLVEKAAAEN--DWVHLFVVSE-------DKSLFSFADRFKLVKKGTKHLKNVTVHSGGDYI 184 (297)
T ss_pred CceEEEEecCCCCchHHHHHHHHHHhhC--CeEEEEEEcC-------CCCCCCHHHHHHHHHHHhCCCCCEEEEecCCee
Confidence 3578999999999999999999999998 5666666542 2568899999999995 443332221
Q ss_pred ----CCC-C-------------C-chHHHH----hhcCCCEEEeCCCcccCCCCCCccHH-HHHHhcC-eEEEecc----
Q 023135 93 ----DAP-W-------------V-VTQDFL----DKHQIDYVAHDSLPYADATGSGKDVY-EFVKSIG-KFKETKR---- 143 (287)
Q Consensus 93 ----~~p-~-------------~-~t~efl----~~~~iD~Vv~G~d~y~~~~g~~~d~y-~~lK~~G-~~~~~~r---- 143 (287)
..| | . ...+|+ +++++..|+.|.|...+..+.++... ...++.| .+..++.
T Consensus 185 v~~~~~~~~~~~~~~~~~~~~a~lsa~~Fi~iL~~~l~~~~ivvG~Df~FG~~r~G~~~l~~~~~~~gf~v~~v~~~~~~ 264 (297)
T cd02169 185 ISSATFPSYFIKEQDVVIKAQTALDARIFRKYIAPALNITKRYVGEEPFSRVTAIYNQTMQEELLSPAIEVIEIERKKYD 264 (297)
T ss_pred eccccChhhhcCChhHHHHHHhcCCHHHHHHHHHHHcCCcEEEEcCCCCCCCcchhHHHHHHhcccCCCEEEEecccccC
Confidence 111 1 0 123454 35789999999988766443344211 1123335 3444432
Q ss_pred cCCCChHHHHHHHHH
Q 023135 144 TDGISTSDLIMRIVK 158 (287)
Q Consensus 144 T~giSTS~II~RI~~ 158 (287)
...||||.|++-|.+
T Consensus 265 g~~ISST~IR~~l~~ 279 (297)
T cd02169 265 GQPISASTVRQLLKE 279 (297)
T ss_pred CcEEcHHHHHHHHHc
Confidence 346999999776643
No 53
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.00 E-value=2e-09 Score=103.35 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=84.1
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc--CCCCCc
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP--DAPWVV 98 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi--~~p~~~ 98 (287)
+++.+.|+|||||.||+.++++|.++| |.|+|+|.++ + ++.+|.++|+++++. ++..+.|.+ ..++.+
T Consensus 140 ~i~~~~g~fdP~t~GH~~li~~A~~~~--d~~~v~v~~~------~-~~~f~~~~R~~~v~~~~~~~~nv~v~~~~~~~i 210 (332)
T TIGR00124 140 KIGSIVMNANPFTNGHRYLIEQAARQC--DWLHLFVVKE------D-ASLFSYDERFALVKQGIQDLSNVTVHNGSAYII 210 (332)
T ss_pred cEEEEEeCcCCCchHHHHHHHHHHHHC--CEEEEEEEeC------C-CCCCCHHHHHHHHHHHhcCCCCEEEEecCCcee
Confidence 579999999999999999999999997 7888888642 2 579999999999995 555554432 223221
Q ss_pred h-----HH-----------------------HHhhcCCCEEEeCCCcccCCCCCCccHHHH-HH----h----cC-eEEE
Q 023135 99 T-----QD-----------------------FLDKHQIDYVAHDSLPYADATGSGKDVYEF-VK----S----IG-KFKE 140 (287)
Q Consensus 99 t-----~e-----------------------fl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~-lK----~----~G-~~~~ 140 (287)
+ .- +...++|.--..|..|+... ...|.. ++ + .+ .+..
T Consensus 211 s~atfp~yflk~~~~~~~~~~~ld~~~f~~~ia~~l~i~~r~vg~ep~~~~----t~~yn~~m~~~~~~~~~~~~I~~~~ 286 (332)
T TIGR00124 211 SRATFPAYFLKEQDVADDCYTEIDLKLFRYKIAPALGITHRFVGTEPLCPV----TALYNQKMKYWLEEPNDAPPIEVVE 286 (332)
T ss_pred ccccchhhhcCChhHHHHHHHHHHHHHHHHhchHhhCCccceeCCCCCCHh----HHHHHHHHHHhhhccCCCCCcEEEE
Confidence 1 11 11224666667788887643 234532 22 1 23 6778
Q ss_pred ecc----cCCCChHHHHHHHH
Q 023135 141 TKR----TDGISTSDLIMRIV 157 (287)
Q Consensus 141 ~~r----T~giSTS~II~RI~ 157 (287)
++| ...+|.|.|++.|.
T Consensus 287 I~R~~~~~~~~SASaIR~~L~ 307 (332)
T TIGR00124 287 IQRKLAAGGPISASTVRELLA 307 (332)
T ss_pred EeeecCCCCeeCHHHHHHHHH
Confidence 888 33589999887774
No 54
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.97 E-value=8.9e-09 Score=91.20 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=79.8
Q ss_pred CccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc-----------CCC
Q 023135 28 GIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP-----------DAP 95 (287)
Q Consensus 28 G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi-----------~~p 95 (287)
-.|||+|.||+.++++|.+.| +.++|+|.+. + .+.+|.++|++|++. ++....|.+ ..|
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~--d~~~V~v~p~------~-~~~~s~e~R~~Mi~~a~~~~~~v~v~~~~~~~v~~~~~~ 76 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAEC--DWVHLFVVSE------D-ASLFSFDERFALVKKGTKDLDNVTVHSGSDYIISRATFP 76 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHC--CceEEEEEeC------C-CCCCCHHHHHHHHHHHhccCCCEEEEecCCceeccccCh
Confidence 479999999999999999998 4555665443 1 457899999999995 454332211 111
Q ss_pred --C------------C-chHHHH----hhcCCCEEEeCCCcccCCCCCCc-cHHHHHHhcC-eEEEecc----cCCCChH
Q 023135 96 --W------------V-VTQDFL----DKHQIDYVAHDSLPYADATGSGK-DVYEFVKSIG-KFKETKR----TDGISTS 150 (287)
Q Consensus 96 --~------------~-~t~efl----~~~~iD~Vv~G~d~y~~~~g~~~-d~y~~lK~~G-~~~~~~r----T~giSTS 150 (287)
+ . ...+|+ +++++..|+.|.+...+..+.|+ +..+.+.+.| .+..++| ..-+|||
T Consensus 77 ~~~~~~~~~~~~~~a~lsa~~Fi~~L~~~l~~~~ivvG~df~FG~~~~G~~~~L~~~~~~g~~v~~I~r~~~~g~~iSST 156 (182)
T smart00764 77 SYFLKEQDVVIKSQTTLDLRIFRKYIAPALGITHRYVGEEPFSPVTAIYNQTMKQTLLSPAIEVVEIERKKANGQPISAS 156 (182)
T ss_pred hhhcCchhHHHHHHhcCCHHHHHHHHHHHcCceEEEEcCCCCCCCCCccCHHHHHHHhhCCCEEEEEecccCCCcEECHH
Confidence 1 0 123554 35799999999987666444343 1222333446 5666666 4458999
Q ss_pred HHHHHHHH
Q 023135 151 DLIMRIVK 158 (287)
Q Consensus 151 ~II~RI~~ 158 (287)
.|++-|.+
T Consensus 157 ~IR~~L~~ 164 (182)
T smart00764 157 TVRKLLKE 164 (182)
T ss_pred HHHHHHHc
Confidence 99877743
No 55
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.96 E-value=1.6e-09 Score=97.52 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=50.6
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC 84 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~ 84 (287)
..+++.|.|.|||.||+.+|++|.+.| ++|||||.|....+.. +-.++..||.+|++.+
T Consensus 5 d~~v~iGRFQPfH~GHl~~I~~al~~~--devII~IGSA~~s~t~--~NPFTa~ER~~MI~~a 63 (196)
T PRK13793 5 DYLVFIGRFQPFHLAHMQTIEIALQQS--RYVILALGSAQMERNI--KNPFLAIEREQMILSN 63 (196)
T ss_pred eEEEEEecCCCCcHHHHHHHHHHHHhC--CEEEEEEccCCCCCCC--CCCCCHHHHHHHHHHh
Confidence 468999999999999999999999997 7999999996544432 3489999999999965
No 56
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.78 E-value=4.8e-08 Score=88.99 Aligned_cols=65 Identities=26% Similarity=0.217 Sum_probs=45.1
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCE--EEE-EE---ecCccccccCCCCCCCHHHHHHHHH-hccCCcccc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTY--LLV-GC---NNDEDTHKYKGKTVMTDKERYESLR-HCRWVDEVI 91 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~--LIV-GV---~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VDeVv 91 (287)
+.+++|+|||+|.||+.++++|.+.+.-+. .+| ++ +++. -.| .+..+.++|++|++ ++.....+.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~---~~k-~~~~~~~~Rl~Ml~lai~~~~~~~ 73 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDA---YGK-KGLASAKHRVAMCRLAVQSSDWIR 73 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccC---CCC-CCCCCHHHHHHHHHHHHccCCCEE
Confidence 578899999999999999999988764332 232 21 2222 123 56789999999998 565544443
No 57
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=98.71 E-value=1.3e-08 Score=99.75 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=43.3
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCC-CCCHHHHHHHHHhccCCccccc-CCCCCc--
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKT-VMTDKERYESLRHCRWVDEVIP-DAPWVV-- 98 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrp-v~s~eER~e~V~~~k~VDeVvi-~~p~~~-- 98 (287)
++-+---|+|||.||+-+|++||+.++.| .||+|.|..++++ |.| +++...|+++...+ .||-|+. +.+|.+
T Consensus 3 ~~GIIaEYNPFHnGH~y~i~~~k~~~~ad-~ii~vMSGnFvQR--GEPAi~dKw~RA~~AL~~-GaDLViELP~~~a~qs 78 (388)
T PF05636_consen 3 VVGIIAEYNPFHNGHLYQIEQAKKITGAD-VIIAVMSGNFVQR--GEPAIIDKWTRAEMALKN-GADLVIELPVVYALQS 78 (388)
T ss_dssp ----E---TT--HHHHHHHHHHH---TSS-EEEEEE--TTSBT--SSB-SS-HHHHHHHHHHH-T-SEEEE---G-----
T ss_pred CCCeEEeECCccHHHHHHHHHHhccCCCC-EEEEEECCCcccC--CCeeeCCHHHHHHHHHHc-CCCEEEECCCcccccc
Confidence 34444579999999999999999998666 5667888889986 777 99999999998877 6999984 555433
Q ss_pred -------hHHHHhhcCCCEEEeCCC
Q 023135 99 -------TQDFLDKHQIDYVAHDSL 116 (287)
Q Consensus 99 -------t~efl~~~~iD~Vv~G~d 116 (287)
.+.+|.+.++|.++.|..
T Consensus 79 A~~FA~gaV~lL~~lgvd~l~FGsE 103 (388)
T PF05636_consen 79 AEYFARGAVSLLNALGVDYLSFGSE 103 (388)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 357788889999999974
No 58
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.61 E-value=7.1e-08 Score=85.31 Aligned_cols=61 Identities=23% Similarity=0.293 Sum_probs=53.1
Q ss_pred CCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc
Q 023135 20 RPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC 84 (287)
Q Consensus 20 r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~ 84 (287)
++.++++-|.|.|||.||+.+++.|.... |.|||+|+|+...+..+ -.+|..||..|++.+
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v--DeliI~iGSa~~~~t~~--nPfTagER~~mi~~~ 62 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV--DELIIVIGSAQESHTLK--NPFTAGERIPMIRDR 62 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC--CEEEEEEccCccccccc--CCCCccchhHHHHHH
Confidence 56789999999999999999999999985 89999999988665433 478999999999953
No 59
>PRK13670 hypothetical protein; Provisional
Probab=98.61 E-value=2e-07 Score=91.42 Aligned_cols=92 Identities=22% Similarity=0.150 Sum_probs=67.4
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCccccc-CCCCCc--
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIP-DAPWVV-- 98 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi-~~p~~~-- 98 (287)
++|-+---||+||.||..+|++|++.++. .++|+|.+-.++++.. .++++.++|++++..+ .||.|+. +..+..
T Consensus 2 k~~GIIaEfdg~H~GH~~~i~~a~~~a~~-~~~~~Vmp~~f~qrg~-p~i~~~~~R~~~a~~~-GvD~vielpf~~a~~s 78 (388)
T PRK13670 2 KVTGIIVEYNPFHNGHLYHLNQAKKLTNA-DVTIAVMSGNFVQRGE-PAIVDKWTRAKMALEN-GVDLVVELPFLYSVQS 78 (388)
T ss_pred ceeEEEeeeCCcCHHHHHHHHHHHHHHhC-CCcEEEecHHHhCCCC-CCCCCHHHHHHHHHHc-CCCEEEEeCCchHhCC
Confidence 34445557999999999999999998755 4666666776776522 3499999999999998 6999885 322321
Q ss_pred hHH-------HHhhcCCCEEEeCCC
Q 023135 99 TQD-------FLDKHQIDYVAHDSL 116 (287)
Q Consensus 99 t~e-------fl~~~~iD~Vv~G~d 116 (287)
..+ .|.+.+++.|+.|.+
T Consensus 79 ae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 79 ADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred HHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 223 445578999999986
No 60
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=98.57 E-value=1.1e-07 Score=88.35 Aligned_cols=100 Identities=24% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCC-CCCCHHHHHHHHHhc----c---CC
Q 023135 16 PPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGK-TVMTDKERYESLRHC----R---WV 87 (287)
Q Consensus 16 ~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgr-pv~s~eER~e~V~~~----k---~V 87 (287)
.|.....++.++|+||-+|.||--+|..|..+. .+.|||||+.|+.+.+.+-+ -+.|.++|++-|... + .|
T Consensus 137 ~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la-~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l~~ 215 (293)
T KOG3351|consen 137 GPANKFMVVALGGTFDRLHDGHKVLLSVAAELA-SDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDLNV 215 (293)
T ss_pred cchhcceeEEeccchhhhccchHHHHHHHHHHh-hceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCceE
Confidence 345555679999999999999999999999876 68999999999987653322 388999999977653 3 23
Q ss_pred cccccCCCCCchHHHHhhcCCCEEEeCCCccc
Q 023135 88 DEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYA 119 (287)
Q Consensus 88 DeVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~ 119 (287)
+-|=+-+||+++.. .-.++++|.....+.
T Consensus 216 ~~vpi~Dp~GPt~~---d~elE~lVVS~ET~~ 244 (293)
T KOG3351|consen 216 RVVPIHDPFGPTIT---DPELEALVVSEETKT 244 (293)
T ss_pred EEEecccCCCCCcc---CCcceEEEEeecccc
Confidence 33334688887532 246788888776554
No 61
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=98.53 E-value=2.5e-07 Score=87.42 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=82.4
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCC--C-CEEEEEEecCccc--cccCCCCCCCHHHHHHHHHhccCCcccccCCCCC-
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFP--N-TYLLVGCNNDEDT--HKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWV- 97 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~--g-d~LIVGV~sD~~~--~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~- 97 (287)
|++-|.||-+|.||..+|++|++... + .-+++-....+.. ...+..++++.++|.+.++.+ .||.+++- |+.
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~-Gvd~~~~~-~F~~ 78 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK-GVEQLLVV-VFDE 78 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc-CCCEEEEe-CCCH
Confidence 47889999999999999999886421 1 2333333333321 111112389999999999998 58888762 221
Q ss_pred ----c-hHHHHh-----hcCCCEEEeCCCcccCCCCCC--ccHHHHHHhcC-eEEEec---ccCCCChHHHHHHHHH
Q 023135 98 ----V-TQDFLD-----KHQIDYVAHDSLPYADATGSG--KDVYEFVKSIG-KFKETK---RTDGISTSDLIMRIVK 158 (287)
Q Consensus 98 ----~-t~efl~-----~~~iD~Vv~G~d~y~~~~g~~--~d~y~~lK~~G-~~~~~~---rT~giSTS~II~RI~~ 158 (287)
+ ..+|++ ++++..|++|.|...+..+.+ +.+.+..++.| .+..++ ...-||||.|++-|.+
T Consensus 79 ~~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~FG~~~~G~~~~L~~~~~~~g~~v~~~~~~~~~~~ISST~IR~~l~~ 155 (288)
T TIGR00083 79 EFANLSALQFIDQLIVKHLHVKFLVVGDDFRFGHDRQGDFLLLQLFGNTTIFCVIVKQLFCQDIRISSSAIRQALKN 155 (288)
T ss_pred HHHcCCHHHHHHHHHHhccCCcEEEECCCccCCCCCCCCHHHHHHhccccCcEEEEeccccCCCeECHHHHHHHHHc
Confidence 2 344654 368999999998765432222 23333344455 233332 2256999999776644
No 62
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=98.44 E-value=4e-07 Score=78.81 Aligned_cols=128 Identities=19% Similarity=0.194 Sum_probs=70.3
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccC--CCC-EEEEEEecCcccccc---CCCCCCCHHHHHHHHHhccCCccccc-C-
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLF--PNT-YLLVGCNNDEDTHKY---KGKTVMTDKERYESLRHCRWVDEVIP-D- 93 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf--~gd-~LIVGV~sD~~~~~~---Kgrpv~s~eER~e~V~~~k~VDeVvi-~- 93 (287)
..|++-|.||=+|.||..+|++|.+.. .+- -+++-....+...-. ....++|.+||.++++.+ .||.+++ +
T Consensus 6 ~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~-Gvd~~~~~~F 84 (157)
T PF06574_consen 6 KSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL-GVDYVIVIPF 84 (157)
T ss_dssp -EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT-TESEEEEE-C
T ss_pred CcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc-CCCEEEEecc
Confidence 369999999999999999999988763 111 222333333322211 112499999999999997 5888765 2
Q ss_pred CC---CCchHHHHhh-----cCCCEEEeCCCcccCCCC--CCccHHHHHHhcC-eEEEecc----cCCCChH
Q 023135 94 AP---WVVTQDFLDK-----HQIDYVAHDSLPYADATG--SGKDVYEFVKSIG-KFKETKR----TDGISTS 150 (287)
Q Consensus 94 ~p---~~~t~efl~~-----~~iD~Vv~G~d~y~~~~g--~~~d~y~~lK~~G-~~~~~~r----T~giSTS 150 (287)
++ .....+|++. +++..||.|.|.-.+..+ +.+.+.+.++++| .+..++. ..-||||
T Consensus 85 ~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~~~~ISSt 156 (157)
T PF06574_consen 85 TEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKIDGEKISST 156 (157)
T ss_dssp CCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EETTEE-SHH
T ss_pred hHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcCCcEeCCC
Confidence 21 1224677764 688999999986554322 2223333444455 4444432 3357877
No 63
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=98.41 E-value=2.2e-06 Score=81.81 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=92.5
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEE-EEEEecCcccccc-CC-C-C--CCCHHHHHHHHHhccCCcccccCC
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYL-LVGCNNDEDTHKY-KG-K-T--VMTDKERYESLRHCRWVDEVIPDA 94 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~L-IVGV~sD~~~~~~-Kg-r-p--v~s~eER~e~V~~~k~VDeVvi~~ 94 (287)
...|++-|.||=+|.||..+|++|++.....-+ .+.++=++.-... .+ . | +++.++|.+.++.+. ||.+++-
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~g-vd~~~v~- 92 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYG-VDALVVL- 92 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcC-CcEEEEE-
Confidence 346999999999999999999999843211112 2223333321111 11 1 2 899999999999984 8888751
Q ss_pred CCC------chHHHHh----hcCCCEEEeCCCcccCCCCCCccHHHHHHhcC----eEEEec--ccCC--CChHHHHHHH
Q 023135 95 PWV------VTQDFLD----KHQIDYVAHDSLPYADATGSGKDVYEFVKSIG----KFKETK--RTDG--ISTSDLIMRI 156 (287)
Q Consensus 95 p~~------~t~efl~----~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G----~~~~~~--rT~g--iSTS~II~RI 156 (287)
++. ...+|+. .+++..++.|.|...+-...++ .+.++..| .+..++ ..+| ||||.|++-+
T Consensus 93 ~F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~FGk~~~g~--~~~L~~~~~~gf~v~~v~~~~~~~~~iSSt~IR~~L 170 (304)
T COG0196 93 DFDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRFGKGRQGN--AELLRELGQKGFEVTIVPKINEEGIRISSTAIRQAL 170 (304)
T ss_pred eCCHhHhhCCHHHHHHHHHhccCCcEEEEecccccCCCCCCC--HHHHHHhccCCceEEEeccEecCCcEEchHHHHHHH
Confidence 111 1345555 7899999999887654322222 33444444 344444 3444 9999998877
Q ss_pred HHhhHHHHHHHhhcCCc
Q 023135 157 VKDYNQYVTRNLDRGYT 173 (287)
Q Consensus 157 ~~~yd~y~~Rnl~rg~~ 173 (287)
.+.-=....+-|-+-|+
T Consensus 171 ~~gdl~~A~~lLG~py~ 187 (304)
T COG0196 171 REGDLEEANKLLGRPYS 187 (304)
T ss_pred hcCCHHHHHHhcCCCeE
Confidence 65544555565555554
No 64
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=98.29 E-value=1.9e-06 Score=84.00 Aligned_cols=88 Identities=25% Similarity=0.291 Sum_probs=68.2
Q ss_pred EcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCC-CCCHHHHHHHHHhccCCcccccC--------CCC
Q 023135 26 ADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKT-VMTDKERYESLRHCRWVDEVIPD--------APW 96 (287)
Q Consensus 26 ~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrp-v~s~eER~e~V~~~k~VDeVvi~--------~p~ 96 (287)
+---|||||.||..+|++|+..|+++..|+++..| ++++ |.| +.+..+|.++..++ .+|.||+. +||
T Consensus 6 ii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd-f~qR--gepai~~k~~r~~~aL~~-g~D~VIelP~~~s~q~a~~ 81 (358)
T COG1323 6 IIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD-FTQR--GEPAIGHKWERKKMALEG-GADLVIELPLERSGQGAPY 81 (358)
T ss_pred eeeecCcccccHHHHHHHHHHhccCCceEEeeecc-hhhc--CCCccccHHHHHhhhhhc-CceEEEEcceEEecCCCch
Confidence 34469999999999999999989777666666666 5654 554 99999999999887 58899862 333
Q ss_pred Cc--hHHHHhhcCCCEEEeCCCc
Q 023135 97 VV--TQDFLDKHQIDYVAHDSLP 117 (287)
Q Consensus 97 ~~--t~efl~~~~iD~Vv~G~d~ 117 (287)
-. .+..+..+++|-|+.|..+
T Consensus 82 fa~~av~il~~l~~~~i~fgse~ 104 (358)
T COG1323 82 FATRAVRILNALGGDDIAFGSPP 104 (358)
T ss_pred hhHHHHHHHHhcCCCeEEEeCCC
Confidence 22 4577788899999999744
No 65
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=98.29 E-value=3.2e-06 Score=75.36 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=84.2
Q ss_pred CccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc--CCCCCch-----
Q 023135 28 GIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP--DAPWVVT----- 99 (287)
Q Consensus 28 G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi--~~p~~~t----- 99 (287)
..-+||+.||.-++++|++.+ |.|.|=|-+.. +..+|+.+|+++|+. ++..+.|++ ..+|.++
T Consensus 6 MNaNPFT~GH~yLiE~Aa~~~--d~l~vFVV~eD-------~S~Fpf~~R~~LVk~G~~~L~NV~V~~~g~YiIS~aTFP 76 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQAAKEC--DWLHVFVVSED-------RSLFPFADRYELVKEGTADLPNVTVHPGGDYIISSATFP 76 (182)
T ss_pred EcCCCCccHHHHHHHHHHHhC--CEEEEEEEccc-------cCcCCHHHHHHHHHHHhCcCCCEEEEcCCCeeeecccCh
Confidence 345899999999999999995 88888776654 468999999999994 666666654 3333221
Q ss_pred H-----------------------HHHhhcCCCEEEeCCCcccCCCCCCcc-HHHHHHhcC-eEEEeccc----CCCChH
Q 023135 100 Q-----------------------DFLDKHQIDYVAHDSLPYADATGSGKD-VYEFVKSIG-KFKETKRT----DGISTS 150 (287)
Q Consensus 100 ~-----------------------efl~~~~iD~Vv~G~d~y~~~~g~~~d-~y~~lK~~G-~~~~~~rT----~giSTS 150 (287)
. .+...++|..-..|..|+.......+. ..+++...| .+++++|. .-||.|
T Consensus 77 sYFlK~~~~~~~~~~~lD~~iF~~~IAp~L~It~RfVG~EP~~~vT~~YN~~M~~~Lp~~gi~v~ei~R~~~~g~~ISAS 156 (182)
T PF08218_consen 77 SYFLKDEDDVIKAQAELDATIFKKYIAPALGITKRFVGEEPFSPVTRIYNEAMKEILPPYGIEVVEIPRKEINGEPISAS 156 (182)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHhhHhcCcccceeCCCCCCHHHHHHHHHHHHhccccCCEEEEEecccCCCcEEcHH
Confidence 1 122335777778898887643221111 223556678 88899985 359999
Q ss_pred HHHHHHHH
Q 023135 151 DLIMRIVK 158 (287)
Q Consensus 151 ~II~RI~~ 158 (287)
.+++-|.+
T Consensus 157 ~VR~~l~~ 164 (182)
T PF08218_consen 157 RVRKLLKE 164 (182)
T ss_pred HHHHHHHc
Confidence 98776654
No 66
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.04 E-value=9.5e-06 Score=74.30 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=47.5
Q ss_pred cCCCCCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCC-EEEEEEecCccccccCCCCCCCHHHHHHHHH-hccC
Q 023135 10 GTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNT-YLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRW 86 (287)
Q Consensus 10 ~~~~~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd-~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~ 86 (287)
|-..+..+...-++.+++|+|||+|.||+.+++.|.+...-+ ..+|++.--+.-...+.....+.++|++|++ ++..
T Consensus 11 ~~~~~~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k~~~~~~~~Rl~Ml~lai~~ 89 (236)
T PLN02945 11 SCGANSTGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKKKGLASAEHRIQMCQLACED 89 (236)
T ss_pred hhhhcCccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCcccccCCCCCHHHHHHHHHHHhcC
Confidence 344455554444567889999999999999998888754223 2334322111100111135679999999998 5543
No 67
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.85 E-value=0.0086 Score=57.69 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=50.7
Q ss_pred CCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc
Q 023135 20 RPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP 92 (287)
Q Consensus 20 r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi 92 (287)
..+++.+-..-+||++||--+++||.+.| |.|.+=|-++. +..+|+++|..+|.. +...+.|.+
T Consensus 144 gkkIgaIVMNANPFTLGH~YLVEqAaaqc--DwlHLFvV~eD-------~S~f~y~~R~~Lv~~G~~~l~Nvt~ 208 (352)
T COG3053 144 GKKIGAIVMNANPFTLGHRYLVEQAAAQC--DWLHLFVVKED-------SSLFPYEDRLDLVKKGTADLPNVTV 208 (352)
T ss_pred CCeeEEEEEeCCCccchhHHHHHHHHhhC--CEEEEEEEecc-------cccCCHHHHHHHHHHhhccCCceEE
Confidence 44577788889999999999999999995 77777666543 357999999999984 666666654
No 68
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=96.34 E-value=0.0087 Score=56.94 Aligned_cols=66 Identities=20% Similarity=0.071 Sum_probs=50.2
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC---CCCCCHHHHHHHHHhccCCcccccCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG---KTVMTDKERYESLRHCRWVDEVIPDA 94 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg---rpv~s~eER~e~V~~~k~VDeVvi~~ 94 (287)
.|.+-|. +|.||..++++|++.+ +.+||.+..++..-.... +.+.+.+++.++++.+ .||.++.++
T Consensus 26 ~VpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P~ 94 (282)
T TIGR00018 26 FVPTMGN---LHDGHMSLIDRAVAEN--DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL-GVDVVFAPS 94 (282)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC--CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc-CCCEEECCC
Confidence 3566777 9999999999999985 788888887764421111 2488999999999987 678777644
No 69
>PLN02660 pantoate--beta-alanine ligase
Probab=96.05 E-value=0.016 Score=55.28 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=50.0
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCcccccc-C--CCCCCCHHHHHHHHHhccCCcccccCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKY-K--GKTVMTDKERYESLRHCRWVDEVIPDA 94 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~-K--grpv~s~eER~e~V~~~k~VDeVvi~~ 94 (287)
.|.+=|. +|.||..++++|++.+ +.+||.+..++..-.. . .+.+.|.+++.++++.+ .||.|+.++
T Consensus 25 fVpTmG~---LH~GH~~LI~~a~~~a--~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~-GVD~vf~P~ 93 (284)
T PLN02660 25 LVPTMGY---LHEGHLSLVRAARARA--DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL-GVDAVFNPH 93 (284)
T ss_pred EEEcCch---hhHHHHHHHHHHHHhC--CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc-CCCEEECCC
Confidence 4566677 9999999999999984 6788888877754211 1 12488999999999987 588887644
No 70
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=95.89 E-value=0.012 Score=55.81 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=45.9
Q ss_pred ccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 023135 29 IYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG---KTVMTDKERYESLRHCRWVDEVIPD 93 (287)
Q Consensus 29 ~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg---rpv~s~eER~e~V~~~k~VDeVvi~ 93 (287)
+.--+|.||..+|++|++.. +.+||.+..++..-.... ..+.|.+++.++++.+ .||.++..
T Consensus 29 tmG~lH~GH~~Li~~a~~~a--~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~-GvD~v~~p 93 (281)
T PRK00380 29 TMGALHEGHLSLVREARAEA--DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA-GVDLVFAP 93 (281)
T ss_pred ccCceeHHHHHHHHHHHHhC--CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc-CCCEEEeC
Confidence 33339999999999999985 678888877764321111 2478999999999987 58887754
No 71
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=95.30 E-value=0.033 Score=52.86 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=49.0
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCcccccc-C--CCCCCCHHHHHHHHHhccCCccccc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKY-K--GKTVMTDKERYESLRHCRWVDEVIP 92 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~-K--grpv~s~eER~e~V~~~k~VDeVvi 92 (287)
.|.+-|. +|.||..++++|++.+ +.+||.+..++..-.. . ...+.+.+++.+.++.+ .||.++.
T Consensus 26 ~V~TmG~---LH~GH~~LI~~a~~~a--~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~-GvD~vF~ 92 (277)
T cd00560 26 FVPTMGA---LHEGHLSLVRRARAEN--DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA-GVDLLFA 92 (277)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC--CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC-CCCEEEC
Confidence 4566677 9999999999999985 7899999887754211 1 12378899999999987 6787754
No 72
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=94.68 E-value=0.071 Score=49.19 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=58.5
Q ss_pred CCCeEEEEcCccCcCCHHHHHHHHHHhccC---CCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc--
Q 023135 19 DRPVRVYADGIYDLFHFGHARALEQAKKLF---PNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP-- 92 (287)
Q Consensus 19 ~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf---~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi-- 92 (287)
..|+..++.|+|+|...+|+++++-|+-.- .+-.|+=|+-|- ..-.||.+...+..-|+.+++. |..-+.+-+
T Consensus 6 ~~~v~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSP-V~DaYkKKgLipa~hrv~~~ElAt~~Skwl~vD~ 84 (234)
T KOG3199|consen 6 KTPVVLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSP-VGDAYKKKGLIPAYHRVRMVELATETSKWLMVDG 84 (234)
T ss_pred cceEEEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecc-cchhhhccccchhhhHHHHHHhhhccccceecch
Confidence 445667889999999999999999999532 234667777651 1122666789999999999994 543333333
Q ss_pred ----CCCCCchHHHHhhc
Q 023135 93 ----DAPWVVTQDFLDKH 106 (287)
Q Consensus 93 ----~~p~~~t~efl~~~ 106 (287)
+..|.-|...|+.|
T Consensus 85 weslQ~~wt~T~~vlrHh 102 (234)
T KOG3199|consen 85 WESLQKEWTRTVKVLRHH 102 (234)
T ss_pred hhhccHHHhhhhHHHHHH
Confidence 23354455555543
No 73
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=93.01 E-value=0.17 Score=51.89 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=43.9
Q ss_pred EcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC----CCCCCHHHHHHHHHhccCCcccccC
Q 023135 26 ADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG----KTVMTDKERYESLRHCRWVDEVIPD 93 (287)
Q Consensus 26 ~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg----rpv~s~eER~e~V~~~k~VDeVvi~ 93 (287)
+-.|-=-+|-||+.++++|++. ++.+||.|-.++.--. .+ +-.-+.+.=+++++.+ .||.|+.+
T Consensus 24 ~VPTMG~LH~GHlsLi~~A~~~--~d~vVvSIFVNP~QF~-~~eD~~~YPr~~~~D~~~l~~~-gvd~vf~P 91 (512)
T PRK13477 24 FVPTMGALHQGHLSLIRRARQE--NDVVLVSIFVNPLQFG-PNEDLERYPRTLEADRELCESA-GVDAIFAP 91 (512)
T ss_pred EECCCcchhHHHHHHHHHHHHh--CCEEEEEEccCcccCC-CchhhhhCCCCHHHHHHHHHhc-CCCEEECC
Confidence 3345566999999999999998 5899999976663211 11 2345667767777765 56766643
No 74
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=92.55 E-value=0.22 Score=47.57 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=34.9
Q ss_pred ccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 023135 29 IYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG---KTVMTDKERYESLRHCRWVDEVIPD 93 (287)
Q Consensus 29 ~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg---rpv~s~eER~e~V~~~k~VDeVvi~ 93 (287)
|-=-+|.||+.++++|++. ++.+||.|--++.--.... +..-+.+.=+++++.+ .||.|+.+
T Consensus 29 TMGaLHeGHlsLi~~A~~~--~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~-gvD~vF~P 93 (280)
T PF02569_consen 29 TMGALHEGHLSLIRRARAE--NDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKA-GVDAVFAP 93 (280)
T ss_dssp E-SS--HHHHHHHHHHHHH--SSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHT-T-SEEE--
T ss_pred CCchhhHHHHHHHHHHHhC--CCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhcc-CCCEEEcC
Confidence 3334699999999999998 5999999987774322111 2345666666777665 57777643
No 75
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=91.30 E-value=0.6 Score=46.29 Aligned_cols=90 Identities=14% Similarity=0.019 Sum_probs=58.5
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cCC---ccccc-CCCC-
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RWV---DEVIP-DAPW- 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~V---DeVvi-~~p~- 96 (287)
+|++-=+|||+|.||..+.+.|....+.+.|+|-...-+ .| ...++.+-|+++++.+ ... +.|++ ..|+
T Consensus 185 ~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~----~k-~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~~~e 259 (383)
T TIGR00339 185 TVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL----TK-PGDIPAEVRMRAYEVLKEGYPNPERVMLTFLPLA 259 (383)
T ss_pred eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHhhCCCCCceEEEecchH
Confidence 577789999999999999999998643465555443333 23 2689999999999965 221 22322 2232
Q ss_pred ----CchH---H--HHhhcCCCEEEeCCCc
Q 023135 97 ----VVTQ---D--FLDKHQIDYVAHDSLP 117 (287)
Q Consensus 97 ----~~t~---e--fl~~~~iD~Vv~G~d~ 117 (287)
++.. . +-+.+++.+++.|.|.
T Consensus 260 m~~agpreall~Aiir~nyG~th~IiG~Dh 289 (383)
T TIGR00339 260 MRYAGPREAIWHAIIRKNYGATHFIVGRDH 289 (383)
T ss_pred hhcCCcHHHHHHHHHHHHCCCCEEEECCCC
Confidence 1221 1 2344688899999765
No 76
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=86.26 E-value=0.72 Score=44.12 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=30.4
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCcc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDED 62 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~ 62 (287)
+++++ |---+|-||+.++++|++. +|.+||.|--++.
T Consensus 24 Vg~VP-TMG~LH~GHlsLVr~A~~~--~d~VVVSIFVNP~ 60 (285)
T COG0414 24 VGLVP-TMGNLHEGHLSLVRRAKKE--NDVVVVSIFVNPL 60 (285)
T ss_pred EEEEc-CCcccchHHHHHHHHHhhc--CCeEEEEEEeChh
Confidence 34443 5667999999999999988 6999999988874
No 77
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=79.03 E-value=0.62 Score=36.90 Aligned_cols=15 Identities=53% Similarity=0.804 Sum_probs=0.0
Q ss_pred CccccCCCCCccccc
Q 023135 271 DDYYYDDDSVESEDE 285 (287)
Q Consensus 271 ~~~~~~~~~~~~~~~ 285 (287)
++|++||+++++|++
T Consensus 37 dd~~DDD~dDdeeee 51 (81)
T PF14812_consen 37 DDYEDDDDDDDEEEE 51 (81)
T ss_dssp ---------------
T ss_pred cccccccccchhhcc
Confidence 444444444444544
No 78
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=76.37 E-value=8.8 Score=41.61 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=22.9
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 023135 219 NEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERL 255 (287)
Q Consensus 219 ~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~ 255 (287)
..-..+..++...|+..|..- +--+++-+-|-...
T Consensus 851 l~~~~k~~~L~~~Fi~~~~~~--n~lt~le~~l~~~f 885 (911)
T PF05086_consen 851 LRKQDKCEKLKKNFISKLKEL--NKLTKLEEYLISQF 885 (911)
T ss_pred HHHHHHHHHHHHHHHHHHhhh--cchhHHHHHHHHHH
Confidence 344677788899999988752 12355666665555
No 79
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=72.79 E-value=3.5 Score=38.68 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=31.5
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCcc
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDED 62 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~ 62 (287)
.++++++ +--.+|-||+.+++|+++. +++.+|.|-.++.
T Consensus 24 ~tIgfVP-TMG~LHeGH~SLvrqs~~~--~~~tVVSIfVNP~ 62 (283)
T KOG3042|consen 24 ETIGFVP-TMGCLHEGHASLVRQSVKE--NTYTVVSIFVNPS 62 (283)
T ss_pred CeEEEec-ccccccccHHHHHHHHHhh--CceEEEEEEechh
Confidence 3455554 5567999999999999999 6999999988774
No 80
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=68.41 E-value=1.3 Score=44.46 Aligned_cols=26 Identities=4% Similarity=-0.109 Sum_probs=23.6
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhcc
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKL 47 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~l 47 (287)
..++..|+||.+|.||+.+|.+|..-
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (470)
T PLN02341 415 DDTFWAELLKNSDCSEISFLSKMAIN 440 (470)
T ss_pred chhHHHHhhcccccchhhhhhhhhhc
Confidence 46899999999999999999999865
No 81
>PLN02413 choline-phosphate cytidylyltransferase
Probab=59.70 E-value=99 Score=30.05 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccCC
Q 023135 209 IVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHL 260 (287)
Q Consensus 209 ~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 260 (287)
...+...+.-..|....-++...=..+|+ .....+|..++...-+...+
T Consensus 226 ~~~~~w~~~~~~~~~~f~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 274 (294)
T PLN02413 226 MHRNEWVENADRWVAGFLEKFEEGCHKMG---TAIKDRIQERLMRQQSSGLL 274 (294)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccccccc
Confidence 33334444445555544333332233333 23345666666554444433
No 82
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=58.16 E-value=1.2e+02 Score=25.89 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHh
Q 023135 225 ADRLVAGFLEMFEE 238 (287)
Q Consensus 225 ~~~~~~~f~~~f~~ 238 (287)
...=+...|-+|+.
T Consensus 82 ~q~EldDLL~ll~D 95 (136)
T PF04871_consen 82 AQSELDDLLVLLGD 95 (136)
T ss_pred hhhhHHHHHHHHHh
Confidence 34456777888875
No 83
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=1.4e+02 Score=26.19 Aligned_cols=69 Identities=14% Similarity=0.266 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhHHHHHH---HhhcCCchhhhccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 023135 150 SDLIMRIVKDYNQYVTR---NLDRGYTRKELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENAD 226 (287)
Q Consensus 150 S~II~RI~~~yd~y~~R---nl~rg~~~~~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 226 (287)
-..+.-+...|..|... .+..|+|+..+ ...++-|..|...+.+++..+......+...+..|.++..
T Consensus 36 ~~qL~~l~~y~~ey~q~~~~k~~~G~s~~q~---------~nyq~fI~~Le~~I~q~~~~~~~~~~~ve~~r~~w~ek~~ 106 (148)
T COG2882 36 EEQLKMLSGYRNEYEQNLNEKLKSGVSAAQW---------QNYQQFISQLEVAIDQQQSQLSKLRKQVEQKREIWQEKQI 106 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666677655 77778877643 3456677788888888888777777778888889998876
Q ss_pred H
Q 023135 227 R 227 (287)
Q Consensus 227 ~ 227 (287)
+
T Consensus 107 ~ 107 (148)
T COG2882 107 E 107 (148)
T ss_pred H
Confidence 5
No 84
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=52.85 E-value=8.8 Score=35.16 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=50.4
Q ss_pred CcccccCCCCCchHHHHhhcCCCEEEeCCCcccCCC-C---CCccHHHHHHhcC-eEEEecccCCCChHHHHHHHHHhhH
Q 023135 87 VDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADAT-G---SGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 87 VDeVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~-g---~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~~~yd 161 (287)
|-+++...|. +.+.+++++|||-+.|..+...+. . +.+.+.+.+.+.. ... ..--...|++.||.-|++.+-
T Consensus 8 vg~iv~~~p~--~~~vf~~~~idfCcgG~~~l~ea~~~~~i~~~~~~~~l~~~~~~~~-~~~~~~~~~~~LidyI~~~~H 84 (220)
T PRK10992 8 LGELALSIPR--ATALFREYDLDFCCGGKQTLARAAARKNLDIDVIEARLAALQEQPI-EKDWRSAPLAELIDHIIVRYH 84 (220)
T ss_pred HHHHHHhCcc--HHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHHHHHhccc-cCChhhCCHHHHHHHHHHHHh
Confidence 4456666664 568999999999999876543211 0 1122333333321 110 011124688999999999999
Q ss_pred HHHHHHhhc
Q 023135 162 QYVTRNLDR 170 (287)
Q Consensus 162 ~y~~Rnl~r 170 (287)
.|+++++..
T Consensus 85 ~~~r~~lp~ 93 (220)
T PRK10992 85 DRHREQLPE 93 (220)
T ss_pred HHHHHHHHH
Confidence 999888876
No 85
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=51.53 E-value=50 Score=27.86 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=35.6
Q ss_pred hHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHHHHHH
Q 023135 99 TQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIV 157 (287)
Q Consensus 99 t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~ 157 (287)
.+++|..+++|+|+.+.. +...|..++++| +++..++ -+..+.|+...
T Consensus 57 ~a~~l~~~gvdvvi~~~i--------G~~a~~~l~~~GIkv~~~~~---~~V~e~i~~~~ 105 (121)
T COG1433 57 IAELLVDEGVDVVIASNI--------GPNAYNALKAAGIKVYVAPG---GTVEEAIKAFL 105 (121)
T ss_pred HHHHHHHcCCCEEEECcc--------CHHHHHHHHHcCcEEEecCC---CCHHHHHHHHh
Confidence 479999999999998852 456799999999 6655444 56666665543
No 86
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=51.51 E-value=60 Score=24.36 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=35.8
Q ss_pred hHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHHHHHH
Q 023135 99 TQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIV 157 (287)
Q Consensus 99 t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~ 157 (287)
...+|...++++|+.+.. +...+..|++.| +++.. .+-+..++++.++
T Consensus 45 ~~~~l~~~~v~~li~~~i--------G~~~~~~L~~~gI~v~~~---~~~~i~~~l~~~~ 93 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICGGI--------GEGAFRALKEAGIKVYQG---AGGDIEEALEAYL 93 (94)
T ss_dssp HHHHHHHTTESEEEESCS--------CHHHHHHHHHTTSEEEES---TSSBHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeCC--------CHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHh
Confidence 467888899999999963 456788999999 55443 5667777777654
No 87
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=50.15 E-value=12 Score=38.55 Aligned_cols=31 Identities=29% Similarity=0.635 Sum_probs=23.0
Q ss_pred CCCCeEEEEcC--ccCcCCHHHHHH------HHHHhccC
Q 023135 18 RDRPVRVYADG--IYDLFHFGHARA------LEQAKKLF 48 (287)
Q Consensus 18 ~~r~~rVy~~G--~FDlfH~GHi~~------L~qAk~lf 48 (287)
.+..+++|+.| +||+.|+||++- |.+..+.+
T Consensus 20 ~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~ 58 (490)
T PRK14536 20 EHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFL 58 (490)
T ss_pred CCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhc
Confidence 44557788888 799999999864 56656655
No 88
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=50.01 E-value=2.2e+02 Score=28.87 Aligned_cols=132 Identities=11% Similarity=0.030 Sum_probs=73.4
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEec-CccccccCCCCCCCHHHHHHHHHhccCC-----cccccCCCCC
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNN-DEDTHKYKGKTVMTDKERYESLRHCRWV-----DEVIPDAPWV 97 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~s-D~~~~~~Kgrpv~s~eER~e~V~~~k~V-----DeVvi~~p~~ 97 (287)
..+....|.+.. ...+|+..++.+ -..|.+||-| ++.+.+.=++. .+.++-.+.++.|+-. -..+++.|..
T Consensus 274 w~~~~r~~~i~~-d~ell~~l~~aG-~~~v~iGiES~~~~~L~~~~K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~e 350 (497)
T TIGR02026 274 WGINTRVTDIVR-DADILHLYRRAG-LVHISLGTEAAAQATLDHFRKG-TTTSTNKEAIRLLRQHNILSEAQFITGFENE 350 (497)
T ss_pred EEEecccccccC-CHHHHHHHHHhC-CcEEEEccccCCHHHHHHhcCC-CCHHHHHHHHHHHHHCCCcEEEEEEEECCCC
Confidence 344455555522 235555555543 4689999976 44333322233 3555555666555321 1223455543
Q ss_pred ------chHHHHhhcCCCEEEeC-CCcccCCCCCCccHHHHHHhcCeEE---------EecccCCCChHHHHHHHHHhhH
Q 023135 98 ------VTQDFLDKHQIDYVAHD-SLPYADATGSGKDVYEFVKSIGKFK---------ETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 98 ------~t~efl~~~~iD~Vv~G-~d~y~~~~g~~~d~y~~lK~~G~~~---------~~~rT~giSTS~II~RI~~~yd 161 (287)
-|.+++.+++||.+... ..|+ ++.+.|+.+++.|... .+-.+.++|..+|..-+.+.|.
T Consensus 351 t~e~~~~t~~~~~~l~~~~~~~~~~tP~-----PGT~l~~~~~~~~~~~d~~~y~~~~~~~~~~~m~~~El~~~~~~~~~ 425 (497)
T TIGR02026 351 TDETFEETYRQLLDWDPDQANWLMYTPW-----PFTSLFGELSDRVEVQDYTKYNFVTPIMKPTHMPRWEILLGVKLNYI 425 (497)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEecCC-----CCcHHHHHHHhhcccCchhhccccceEeeCCCCCHHHHHHHHHHHHH
Confidence 25677888899876543 2333 3567898888776431 1112467888888777777775
Q ss_pred HH
Q 023135 162 QY 163 (287)
Q Consensus 162 ~y 163 (287)
.|
T Consensus 426 ~f 427 (497)
T TIGR02026 426 RF 427 (497)
T ss_pred HH
Confidence 43
No 89
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=45.46 E-value=2.8e+02 Score=27.71 Aligned_cols=119 Identities=21% Similarity=0.278 Sum_probs=66.4
Q ss_pred HHHHHHhccCCCCEEEEEEec-CccccccCCCCCCCHHHHHHHHHhccC--C--c-ccccCCCCCc------hHHHHhhc
Q 023135 39 RALEQAKKLFPNTYLLVGCNN-DEDTHKYKGKTVMTDKERYESLRHCRW--V--D-EVIPDAPWVV------TQDFLDKH 106 (287)
Q Consensus 39 ~~L~qAk~lf~gd~LIVGV~s-D~~~~~~Kgrpv~s~eER~e~V~~~k~--V--D-eVvi~~p~~~------t~efl~~~ 106 (287)
++|+..++.+ ...+.+||-| ++.+.+.=++. .+.++-.+.++.|+- + . ..+++.|... +.+++.++
T Consensus 288 e~l~~l~~aG-~~~v~iGiES~s~~~L~~~~K~-~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l 365 (472)
T TIGR03471 288 ETLKVMKENG-LRLLLVGYESGDQQILKNIKKG-LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKEL 365 (472)
T ss_pred HHHHHHHHcC-CCEEEEcCCCCCHHHHHHhcCC-CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 3444444432 3689999966 44333322233 344554455554432 1 1 2234566532 56778888
Q ss_pred CCCEEEeCC-CcccCCCCCCccHHHHHHhcCeEEE--------------ecccCCCChHHHHHHHHHhhHHHH
Q 023135 107 QIDYVAHDS-LPYADATGSGKDVYEFVKSIGKFKE--------------TKRTDGISTSDLIMRIVKDYNQYV 164 (287)
Q Consensus 107 ~iD~Vv~G~-d~y~~~~g~~~d~y~~lK~~G~~~~--------------~~rT~giSTS~II~RI~~~yd~y~ 164 (287)
+++.+.... .|+ ++...|+.+++.|.+.. +-+++.+|..++...+.+-|..|.
T Consensus 366 ~~~~~~~~~l~P~-----PGT~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~~~~~~~~~~~~ 433 (472)
T TIGR03471 366 NPHTIQVSLAAPY-----PGTELYDQAKQNGWITQDSAAMVDDTGHQMAAISYPHLSREEIFDGVERFYKRFY 433 (472)
T ss_pred CCCceeeeecccC-----CCcHHHHHHHHCCCcCCchhhcccCCCceeeeecCCCCCHHHHHHHHHHHHHHHc
Confidence 888765432 333 35688998888884321 112467888888777776666543
No 90
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.36 E-value=2.4e+02 Score=30.00 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=18.7
Q ss_pred CCChHHHHHHHHHhhHHHHHHHhhcCCchhhhcc
Q 023135 146 GISTSDLIMRIVKDYNQYVTRNLDRGYTRKELGV 179 (287)
Q Consensus 146 giSTS~II~RI~~~yd~y~~Rnl~rg~~~~~lnv 179 (287)
+.+-+..+.++++++..|-+.+++.-.+-++..|
T Consensus 63 h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v 96 (611)
T KOG2398|consen 63 HLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGV 96 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444445556666666666666655555554443
No 91
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=42.50 E-value=39 Score=33.69 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=25.0
Q ss_pred CeEEEEcC--ccCcCCHHHHH------HHHHHhccCC-CCEEEEEEe
Q 023135 21 PVRVYADG--IYDLFHFGHAR------ALEQAKKLFP-NTYLLVGCN 58 (287)
Q Consensus 21 ~~rVy~~G--~FDlfH~GHi~------~L~qAk~lf~-gd~LIVGV~ 58 (287)
.+.+|+.| +||+.|+||++ +|.+..+..+ .+..+.|++
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nit 55 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVT 55 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 56677766 79999999986 4555555542 244555554
No 92
>PLN02946 cysteine-tRNA ligase
Probab=42.40 E-value=33 Score=35.87 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=26.7
Q ss_pred CCCCeEEEEcC--ccCcCCHHHHH------HHHHHhccCC-CCEEEEEEe
Q 023135 18 RDRPVRVYADG--IYDLFHFGHAR------ALEQAKKLFP-NTYLLVGCN 58 (287)
Q Consensus 18 ~~r~~rVy~~G--~FDlfH~GHi~------~L~qAk~lf~-gd~LIVGV~ 58 (287)
.+..+.+|+.| +||..|+||++ +|.+..+..+ .+..|.|++
T Consensus 77 ~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niT 126 (557)
T PLN02946 77 VEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFT 126 (557)
T ss_pred CCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCC
Confidence 34456778877 79999999985 4555555542 234455555
No 93
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=42.02 E-value=16 Score=33.96 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=47.5
Q ss_pred CcccccCCCCCchHHHHhhcCCCEEEeCCCcccCC--CCCCccHHHHHHhcCeEEEec--cc---CCCChHHHHHHHHHh
Q 023135 87 VDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADA--TGSGKDVYEFVKSIGKFKETK--RT---DGISTSDLIMRIVKD 159 (287)
Q Consensus 87 VDeVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~--~g~~~d~y~~lK~~G~~~~~~--rT---~giSTS~II~RI~~~ 159 (287)
|-+||...|- +.+.+.++++||-+.|..+...+ ...+-|+-+.+++.......+ .. ...+++.||.-|+..
T Consensus 8 igeIv~~~P~--aa~VF~~~gIdfCcgg~~tLeeA~~~~~gld~~~ll~eLn~~~~~~~~~~~~~~~~~~~~Lid~I~~~ 85 (224)
T PRK13276 8 VADVVTDYPK--AADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQSA 85 (224)
T ss_pred HHHHHHhCcc--HHHHHHHcCCCcCCCCChhHHHHHHHHcCCCHHHHHHHHHHHhhccccCccChhhCCHHHHHHHHHHH
Confidence 3455555564 57899999999855454332211 111223333333332221111 11 237889999999999
Q ss_pred hHHHHHHHhhc
Q 023135 160 YNQYVTRNLDR 170 (287)
Q Consensus 160 yd~y~~Rnl~r 170 (287)
|-.|+++++..
T Consensus 86 hH~~~r~~lp~ 96 (224)
T PRK13276 86 YHEPLREEFKN 96 (224)
T ss_pred HhHHHHHHHHH
Confidence 99999999876
No 94
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=41.45 E-value=45 Score=31.52 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=51.7
Q ss_pred CCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCC
Q 023135 17 PRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWV 87 (287)
Q Consensus 17 ~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~V 87 (287)
...+.++||++|- -=.-|-+-|++=.+.| |+.|-+.|-+|..+.+.||--..++.++....++|+.-
T Consensus 8 ~DT~~TKifVggL---~w~T~~~~l~~yFeqf-GeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL---AWETHKETLRRYFEQF-GEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred CCceEEEEEEcCc---ccccchHHHHHHHHHh-CceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 3445668999984 2234555555555568 78888888899999999999999999999999999753
No 95
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=41.32 E-value=37 Score=36.58 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=29.2
Q ss_pred CCCCCeEEEEcC--ccCcCCHHHHH------HHHHHhccCC-CCEEEEEEec
Q 023135 17 PRDRPVRVYADG--IYDLFHFGHAR------ALEQAKKLFP-NTYLLVGCNN 59 (287)
Q Consensus 17 ~~~r~~rVy~~G--~FDlfH~GHi~------~L~qAk~lf~-gd~LIVGV~s 59 (287)
..+..+.+|+.| +||..|+||++ +|.+..+..+ .+..|.|++.
T Consensus 244 ~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD 295 (699)
T PRK14535 244 IDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITD 295 (699)
T ss_pred CCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcc
Confidence 344567788888 79999999986 4566555542 2556666654
No 96
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=41.18 E-value=1.9e+02 Score=23.37 Aligned_cols=116 Identities=13% Similarity=0.077 Sum_probs=57.6
Q ss_pred cCCHHHHHHHHHHhccCCCCE-EEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHHHHhhcCCCE
Q 023135 32 LFHFGHARALEQAKKLFPNTY-LLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDY 110 (287)
Q Consensus 32 lfH~GHi~~L~qAk~lf~gd~-LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~efl~~~~iD~ 110 (287)
++......++......+|+.+ +..-|.=...+.- + .+-.....++...-.-+.||.||.+.+.. .|=+
T Consensus 4 ll~~~E~~~~~~L~~~~~~~~~V~~qV~l~~~l~~-~-~~~~~~~~~~~~~~~~~~vDFvv~d~~~~---------~p~~ 72 (126)
T PF10881_consen 4 LLTRQERAFYKALEEALPDDYRVFPQVRLSDLLRP-E-GPSRRERKEAFNRINQKHVDFVVCDKRDG---------RPVA 72 (126)
T ss_pred CCCHHHHHHHHHHHHHhCcCcEEEeCccHHHhhCc-c-CCCchhHHHHHHHhcCCCccEEEEECCCC---------cEEE
Confidence 345555666666666665545 3333443333321 1 11112222222222345677777754421 3333
Q ss_pred EEeCCCcccCCC-CCCcc--HHHHHHhcC-eEEEecccCCCChHHHHHHHHH
Q 023135 111 VAHDSLPYADAT-GSGKD--VYEFVKSIG-KFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 111 Vv~G~d~y~~~~-g~~~d--~y~~lK~~G-~~~~~~rT~giSTS~II~RI~~ 158 (287)
++--+++..+.. ....| +-+.|+.+| .++.++.....+.+.|+..|.+
T Consensus 73 vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~~~~~~l~~~l~~ 124 (126)
T PF10881_consen 73 VIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDSYSVEELRRDLRE 124 (126)
T ss_pred EEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 332222211100 01122 335778899 7888888888999999887753
No 97
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=40.52 E-value=1.6e+02 Score=33.33 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccCCCCCcCCCCCC
Q 023135 220 EWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFIYDKEDD 270 (287)
Q Consensus 220 ~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (287)
+-+|.+-..++.||..-.....+.+..|..-..+.++-. |...++++||
T Consensus 272 ELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYD--PNy~yd~~eD 320 (1233)
T KOG1824|consen 272 ELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYD--PNYNYDTEED 320 (1233)
T ss_pred HHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccC--CCCCCCCccc
Confidence 344445445555555444444444555544444444322 4555555333
No 98
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=40.19 E-value=18 Score=35.00 Aligned_cols=50 Identities=28% Similarity=0.521 Sum_probs=29.9
Q ss_pred CCCCCCeEEEEcC--ccCcCCHHHHH------HHHHHhccCC-CCEEEEEEec--Cccccc
Q 023135 16 PPRDRPVRVYADG--IYDLFHFGHAR------ALEQAKKLFP-NTYLLVGCNN--DEDTHK 65 (287)
Q Consensus 16 ~~~~r~~rVy~~G--~FDlfH~GHi~------~L~qAk~lf~-gd~LIVGV~s--D~~~~~ 65 (287)
|..++.+.+|+.| +||..|+||++ +|.+..+.++ ....|..|+. |..+.+
T Consensus 3 p~~~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~ 63 (300)
T PF01406_consen 3 PLNPGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKR 63 (300)
T ss_dssp -SCTTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHH
T ss_pred CCCCCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHH
Confidence 3455667788888 79999999986 4555555441 2456677775 444444
No 99
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=40.04 E-value=46 Score=30.19 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=22.1
Q ss_pred EEEEc--CccCcCCHHHHH------HHHHHhccCCCCEEEEEEecC
Q 023135 23 RVYAD--GIYDLFHFGHAR------ALEQAKKLFPNTYLLVGCNND 60 (287)
Q Consensus 23 rVy~~--G~FDlfH~GHi~------~L~qAk~lf~gd~LIVGV~sD 60 (287)
.+|+. -.|+..|+||++ +|.+..++. |..++-.++.|
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~-G~~V~~~~g~d 66 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDL-GYKVRYVQNIT 66 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhc-CCeeEEEeecC
Confidence 45554 468999999975 556666655 33333333333
No 100
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=39.01 E-value=2e+02 Score=28.46 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhhccCCC
Q 023135 244 GTAIKDRIQERLRGQHLI 261 (287)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~ 261 (287)
+..++.|+.+++++++||
T Consensus 283 ~~~~~~rl~~~~Sp~~sp 300 (348)
T KOG2804|consen 283 DDELKGRLLQALSPPQSP 300 (348)
T ss_pred HhHHHHHHHhhcCCCCCC
Confidence 467899999999999987
No 101
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.91 E-value=41 Score=30.63 Aligned_cols=126 Identities=18% Similarity=0.214 Sum_probs=72.1
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCcc-ccc-cCCCCCCCHHHHHHHHHhccCCccccc-CCCCCc
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDED-THK-YKGKTVMTDKERYESLRHCRWVDEVIP-DAPWVV 98 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~-~~~-~Kgrpv~s~eER~e~V~~~k~VDeVvi-~~p~~~ 98 (287)
+.|++-|.=|-+-.||+-+--..-.. .|.++-+|+.+... ... ..|+|-++-.|..-+...+..++.+-. -.||.-
T Consensus 41 ~~vvaf~~kdgik~~~~~~~vNg~~v-~g~~~~~Gl~~~~~ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~k 119 (199)
T KOG3369|consen 41 KVVVAFGSKDGIKVGHLVQAVNGENV-NGYILYDGLSSPRNYPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEPK 119 (199)
T ss_pred ceeEEeecccccchhheeeeeccccc-ccceecccccCccccccccccCCCcccccchhhhhhhhcchhheeeccCCCCC
Confidence 46888999999999997543222222 25688888876432 122 235788888887765555655555543 245431
Q ss_pred hHHHHhhcCCCEEEeCCC---cccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHHHHHHHhhHHHHHHH
Q 023135 99 TQDFLDKHQIDYVAHDSL---PYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIVKDYNQYVTRN 167 (287)
Q Consensus 99 t~efl~~~~iD~Vv~G~d---~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~~~yd~y~~Rn 167 (287)
+ -++..+-.+.- -|... -| +|+.+--+.-.-...+..+|..-|.+|+.+|
T Consensus 120 s------SGie~LetdtF~l~~~QTl-------------TG~KFVvis~~~~~~aD~lLrKiYelYsDyvlKN 173 (199)
T KOG3369|consen 120 S------SGIEVLETDTFTLHIFQTL-------------TGTKFVVIAEPGTQGADSLLRKIYELYSDYVLKN 173 (199)
T ss_pred C------CceEEEEeccEEEEEEEcc-------------CCcEEEEEecCCchhHHHHHHHHHHHHHHHhhcC
Confidence 0 12222222210 01111 14 6776643333445667789999999999876
No 102
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=37.21 E-value=20 Score=38.05 Aligned_cols=42 Identities=31% Similarity=0.642 Sum_probs=28.1
Q ss_pred CCCCeEEEEcC--ccCcCCHHHHH------HHHHHhc-cCC-CCEEEEEEec
Q 023135 18 RDRPVRVYADG--IYDLFHFGHAR------ALEQAKK-LFP-NTYLLVGCNN 59 (287)
Q Consensus 18 ~~r~~rVy~~G--~FDlfH~GHi~------~L~qAk~-lf~-gd~LIVGV~s 59 (287)
.++.+..|+.| +||..|+||++ +|++..+ .++ .+..|.+|+.
T Consensus 57 ~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitD 108 (651)
T PTZ00399 57 NGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITD 108 (651)
T ss_pred CCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 34456667766 79999999986 4666666 552 2566666664
No 103
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=36.69 E-value=16 Score=35.25 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=18.6
Q ss_pred cCcCCHHHHH------HHHHHhccCCCCEEEEEEecCc
Q 023135 30 YDLFHFGHAR------ALEQAKKLFPNTYLLVGCNNDE 61 (287)
Q Consensus 30 FDlfH~GHi~------~L~qAk~lf~gd~LIVGV~sD~ 61 (287)
.+.+|.||++ +|.+..++. |-.+......|.
T Consensus 13 nG~lHiGHa~~~~~~Dvl~Ry~r~~-G~~V~~~~g~D~ 49 (338)
T cd00818 13 NGLPHYGHALNKILKDIINRYKTMQ-GYYVPRRPGWDC 49 (338)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhc-CCccCCcCCcCC
Confidence 3569999996 455555554 444444444554
No 104
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=36.67 E-value=1.4e+02 Score=29.54 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=22.8
Q ss_pred EEEEcC--ccCcCCHHHHH------HHHHHhccCCCCEEEEEEecCc
Q 023135 23 RVYADG--IYDLFHFGHAR------ALEQAKKLFPNTYLLVGCNNDE 61 (287)
Q Consensus 23 rVy~~G--~FDlfH~GHi~------~L~qAk~lf~gd~LIVGV~sD~ 61 (287)
.+++.| .-.++|+||++ ++.+|.++. |..+.....+|+
T Consensus 21 ~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~-G~~v~~v~~~Dd 66 (353)
T cd00674 21 YVVASGISPSGHIHIGNFREVITADLVARALRDL-GFEVRLIYSWDD 66 (353)
T ss_pred EEEecCCCCCCCcccCccHHHHHHHHHHHHHHHc-CCCEEEEEEEcC
Confidence 455555 45889999986 566666654 333333334454
No 105
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.28 E-value=48 Score=33.37 Aligned_cols=141 Identities=21% Similarity=0.314 Sum_probs=73.8
Q ss_pred CeEEEEc--CccCcCCHHHHHHHHHHhccCC-CCEEEEEEecCccccccCCCCCCCHHHHHHHHHh--ccCCcccccCCC
Q 023135 21 PVRVYAD--GIYDLFHFGHARALEQAKKLFP-NTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH--CRWVDEVIPDAP 95 (287)
Q Consensus 21 ~~rVy~~--G~FDlfH~GHi~~L~qAk~lf~-gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~--~k~VDeVvi~~p 95 (287)
|.++|++ =|-+-+|.||+-.|...+.+-. |-.+||-|. |.. ..-|-|-...++|..+-+. ..|+..+...-.
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~~ivLig-d~t--a~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~ 108 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIG-DAT--AMIGDPSGKSEERKLLTRETVLENAETIKKQLG 108 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCeEEEEec-ccc--eecCCCCCCHHHHhhccHHHHHHHHHHHHHHhc
Confidence 5666664 3455689999988888775431 334444443 321 2334455666666554321 011111110000
Q ss_pred CCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEe-------------cccCCCChHHHHHHHHHhhHH
Q 023135 96 WVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKET-------------KRTDGISTSDLIMRIVKDYNQ 162 (287)
Q Consensus 96 ~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~-------------~rT~giSTS~II~RI~~~yd~ 162 (287)
-++. +--.++.+++|... -+....+...|+...+ .+..++|-++++=-+++-||-
T Consensus 109 -----~~ld--~k~~~v~ns~w~~~-----~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~Ef~YpLmQayD~ 176 (401)
T COG0162 109 -----KFLD--NKAEFVNNSDWLKK-----LNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDF 176 (401)
T ss_pred -----ccCC--cceEEEechHHhCc-----CCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchhhhhhHHHHHHHH
Confidence 0000 12355666666543 2345555665533222 123479999999999999984
Q ss_pred -HHHHHhhcCCchhh
Q 023135 163 -YVTRNLDRGYTRKE 176 (287)
Q Consensus 163 -y~~Rnl~rg~~~~~ 176 (287)
|+..+++=|=+.+-
T Consensus 177 ~~L~~dlq~GG~DQ~ 191 (401)
T COG0162 177 VYLNKDLQLGGSDQW 191 (401)
T ss_pred HHHccchhcCChHHH
Confidence 56666665555543
No 106
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=34.42 E-value=1.1e+02 Score=31.71 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=38.1
Q ss_pred EEEEcCcc--CcCCHHHHH------HHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCC
Q 023135 23 RVYADGIY--DLFHFGHAR------ALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDA 94 (287)
Q Consensus 23 rVy~~G~F--DlfH~GHi~------~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~ 94 (287)
.++..|.. .+.|+||++ ++.+|.+.-+.....|..+.|-.-- .|=.+-+| ++++.--.---..+++
T Consensus 20 ~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~l-RKvp~~~p-----~~~~~ylG~Pl~~vpd 93 (515)
T TIGR00467 20 YTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPL-RKVYPFLP-----EELETYLGMPLTRIPD 93 (515)
T ss_pred EEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccc-cccccccc-----HHHHHhCCCcceecCC
Confidence 56666654 668999985 4555655543343444333332111 12123445 2233221223344678
Q ss_pred CCCchHHHHhh
Q 023135 95 PWVVTQDFLDK 105 (287)
Q Consensus 95 p~~~t~efl~~ 105 (287)
|+++..++.+.
T Consensus 94 p~g~~~s~~~h 104 (515)
T TIGR00467 94 PEGCKTSYAEH 104 (515)
T ss_pred CCCCcHHHHHH
Confidence 88876555444
No 107
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=33.05 E-value=1.6e+02 Score=24.18 Aligned_cols=33 Identities=15% Similarity=0.214 Sum_probs=25.9
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023135 183 KEKRLRMNMGLKKLREKVKKHQEKIQIVAKTAS 215 (287)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (287)
|+-+-++...|.+||++++....+-.+.+-.+.
T Consensus 2 kk~~s~I~~eI~kLqe~lk~~e~keAERigRiA 34 (98)
T PRK13848 2 KKPSSKIREEIAKLQEQLKQAETREAERIGRIA 34 (98)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888899999999998888777776554
No 108
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=32.92 E-value=65 Score=29.05 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=45.3
Q ss_pred ccccCCCCCchHHHHhhcCCCEEEeCCCcccCC-CCCCccHHHHHHhcCeEEEec------ccCCCChHHHHHHHHHhhH
Q 023135 89 EVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADA-TGSGKDVYEFVKSIGKFKETK------RTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 89 eVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~-~g~~~d~y~~lK~~G~~~~~~------rT~giSTS~II~RI~~~yd 161 (287)
+|+...|- +.+.+.++++||-+.|..+...+ ...+-|+-..+++......-+ --...|+..||..|++.+-
T Consensus 3 eiv~~~p~--~~~vf~~~gid~cc~g~~~l~~a~~~~g~d~~~~l~~ln~~~~~~~~~~~~~~~~~~~~~Lid~i~~~hH 80 (216)
T TIGR03652 3 EIVTEIPR--AARIFRKYGIDFCCGGNVSLAEACKEKGLDPDEILAELNALQQEPENSGAKDWREAPLSELIDHIVDRHH 80 (216)
T ss_pred HHHHhCcc--HHHHHHHcCCCccCCCcchHHHHHHHcCCCHHHHHHHHHHHHhccccccccChhhCCHHHHHHHHHHHHh
Confidence 34444553 57899999999544443221110 011223333333322111101 1124799999999999999
Q ss_pred HHHHHHhhc
Q 023135 162 QYVTRNLDR 170 (287)
Q Consensus 162 ~y~~Rnl~r 170 (287)
.|+++++..
T Consensus 81 ~~i~~~l~~ 89 (216)
T TIGR03652 81 EYLREELPE 89 (216)
T ss_pred HHHHHHHHH
Confidence 999999885
No 109
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=32.90 E-value=21 Score=36.55 Aligned_cols=58 Identities=28% Similarity=0.484 Sum_probs=34.4
Q ss_pred eEEEEcC--ccCcCCHHHHH------HHHHHhccCCC-CEEEEEEec--Ccccccc--CCCCCCCHHHHHH
Q 023135 22 VRVYADG--IYDLFHFGHAR------ALEQAKKLFPN-TYLLVGCNN--DEDTHKY--KGKTVMTDKERYE 79 (287)
Q Consensus 22 ~rVy~~G--~FDlfH~GHi~------~L~qAk~lf~g-d~LIVGV~s--D~~~~~~--Kgrpv~s~eER~e 79 (287)
+.+|+.| +||..|+||+| +|++.....+. +..|==|+. |..+.+- .|.++....+|+.
T Consensus 23 V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i 93 (464)
T COG0215 23 VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYI 93 (464)
T ss_pred EEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHH
Confidence 7788888 79999999975 67777765533 223333443 4444432 2334444455543
No 110
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=32.84 E-value=1.3e+02 Score=29.72 Aligned_cols=89 Identities=15% Similarity=0.068 Sum_probs=56.5
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEE-EEecCccccccCCCCCCCHHHHHHHHHhc--cCC--ccccc-CCCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLV-GCNNDEDTHKYKGKTVMTDKERYESLRHC--RWV--DEVIP-DAPW 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIV-GV~sD~~~~~~Kgrpv~s~eER~e~V~~~--k~V--DeVvi-~~p~ 96 (287)
+|++-=+-+|+|.||..+++.|.....++-|+| -+..- .| .--++.+-|+++.+++ .|. +.+++ .-|+
T Consensus 158 ~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~-----~k-~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~lp~ 231 (353)
T cd00517 158 RVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW-----TK-PGDVPDEVRMRAYEALLEEYYLPERTVLAILPL 231 (353)
T ss_pred eEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC-----CC-CCCCCHHHHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 577788999999999999999998752132333 22221 11 2378999999988876 344 55543 2232
Q ss_pred -----CchHHHH-----hhcCCCEEEeCCCc
Q 023135 97 -----VVTQDFL-----DKHQIDYVAHDSLP 117 (287)
Q Consensus 97 -----~~t~efl-----~~~~iD~Vv~G~d~ 117 (287)
++....+ +.+++..++.|-|+
T Consensus 232 ~mryAGPrEallhAiirkN~GcThfIvGrDH 262 (353)
T cd00517 232 PMRYAGPREALWHAIIRKNYGATHFIVGRDH 262 (353)
T ss_pred hhcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence 2222222 34689999988654
No 111
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=32.10 E-value=1.5e+02 Score=29.15 Aligned_cols=70 Identities=19% Similarity=0.099 Sum_probs=46.5
Q ss_pred HHHHHhccCCCCEEEEEEec-Ccc------------ccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHHHHhhc
Q 023135 40 ALEQAKKLFPNTYLLVGCNN-DED------------THKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKH 106 (287)
Q Consensus 40 ~L~qAk~lf~gd~LIVGV~s-D~~------------~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~efl~~~ 106 (287)
.+-.|+.+. -.+++||++- |.. .++..|...+|. ||-.++.+ .++.|.... ..+.+++.++
T Consensus 105 ~~~aA~~~~-~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~n~l~~~--~a~~v~~~~--~~t~~~l~~~ 178 (396)
T TIGR03492 105 PLLFAWLSG-KPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERWLMRSR--RCLAVFVRD--RLTARDLRRQ 178 (396)
T ss_pred HHHHHHHcC-CCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HHHHhhch--hhCEEeCCC--HHHHHHHHHC
Confidence 555555442 4578888875 433 244467777778 77676655 356666544 4578999998
Q ss_pred CCCEEEeCC
Q 023135 107 QIDYVAHDS 115 (287)
Q Consensus 107 ~iD~Vv~G~ 115 (287)
++.+++.|.
T Consensus 179 g~k~~~vGn 187 (396)
T TIGR03492 179 GVRASYLGN 187 (396)
T ss_pred CCeEEEeCc
Confidence 888888886
No 112
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=30.97 E-value=88 Score=25.20 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=8.3
Q ss_pred HhhcCCCEEEeCC
Q 023135 103 LDKHQIDYVAHDS 115 (287)
Q Consensus 103 l~~~~iD~Vv~G~ 115 (287)
+....+|+|+.|.
T Consensus 86 ~~~~~~D~vv~GE 98 (127)
T cd02068 86 LEEPGVDFVVIGE 98 (127)
T ss_pred hcCCCCCEEEECC
Confidence 4445677777774
No 113
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=30.86 E-value=85 Score=21.00 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.3
Q ss_pred HHHhhHHHHHHHHHH
Q 023135 221 WVENADRLVAGFLEM 235 (287)
Q Consensus 221 w~~~~~~~~~~f~~~ 235 (287)
-++|+.+|+++|...
T Consensus 16 Le~NAe~FV~~fVQK 30 (33)
T TIGR03687 16 LESNAEEFVRGFVQK 30 (33)
T ss_pred HHHhHHHHHHHHHHc
Confidence 378999999999753
No 114
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=30.44 E-value=3.2e+02 Score=26.59 Aligned_cols=78 Identities=13% Similarity=0.236 Sum_probs=50.2
Q ss_pred hhHHHHhhhHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhhH-------HHHHHHHH
Q 023135 184 EKRLRMNMGLKKLREKVKKHQE----------------------KIQIVAKTASMRRNEWVENAD-------RLVAGFLE 234 (287)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~w~~~~~-------~~~~~f~~ 234 (287)
+..++-+...++|++-+..+.. ++.+.+..+...+.+|++... ..+..|++
T Consensus 98 ad~~~~~~tf~kW~~ii~~vl~q~l~lEafa~Gl~~~~n~~~~~~L~e~~~~~~~~~~~w~~~Y~~~~~yWp~~v~~~v~ 177 (345)
T PF05075_consen 98 ADKLKTKATFEKWKKIIDGVLGQLLFLEAFASGLFKDKNMYDPDRLIEKIEEINEKMDKWKEEYKKDESYWPDNVKKFVE 177 (345)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Confidence 3455566677788887776543 444555666677888888862 56788888
Q ss_pred HHHhhhhhhhH-HHHHHHHHHhhccCCC
Q 023135 235 MFEERCHKMGT-AIKDRIQERLRGQHLI 261 (287)
Q Consensus 235 ~f~~~~~~~~~-~~~~~~~~~~~~~~~~ 261 (287)
.+.....++.+ .--+.|++.|..-.++
T Consensus 178 ~~~d~~~~~sn~eKAd~Ik~~Le~ilTn 205 (345)
T PF05075_consen 178 EVQDNNSHLSNEEKADEIKKKLEKILTN 205 (345)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHhhCCC
Confidence 87765444433 3346677777766553
No 115
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=30.38 E-value=4.7e+02 Score=25.84 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=37.6
Q ss_pred hHHHHHHHhhcCCchhhh----ccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023135 160 YNQYVTRNLDRGYTRKEL----GVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAK 212 (287)
Q Consensus 160 yd~y~~Rnl~rg~~~~~l----nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (287)
|+.-.-++|++|-++..- +-+.....-+-+++.+++|+.++.+....+....+
T Consensus 147 YD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~~k 203 (323)
T PF08537_consen 147 YDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEITKK 203 (323)
T ss_pred hHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778899999887655 44555566667788888888888777666554433
No 116
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=30.11 E-value=1.6e+02 Score=20.96 Aligned_cols=47 Identities=13% Similarity=0.271 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 023135 192 GLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEE 238 (287)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~ 238 (287)
....++....++...+......+..+-..|...+..-...+..-|..
T Consensus 12 ~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~ 58 (86)
T PF06013_consen 12 AAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQ 58 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHH
Confidence 33444444444444444444444444456776665544444444443
No 117
>PF07217 Het-C: Heterokaryon incompatibility protein Het-C; InterPro: IPR010816 In filamentous fungi, het loci (for heterokaryon incompatibility) are believed to regulate self/nonself-recognition during vegetative growth. As filamentous fungi grow, hyphal fusion occurs within an individual colony to form a network. Hyphal fusion can occur also between different individuals to form a heterokaryon, in which genetically distinct nuclei occupy a common cytoplasm. However, heterokaryotic cells are viable only if the individuals involved have identical alleles at all het loci [].
Probab=29.92 E-value=3.3e+02 Score=29.07 Aligned_cols=119 Identities=10% Similarity=0.061 Sum_probs=71.6
Q ss_pred HHHHHhhHHHHHHHhhcCCchhh---hccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 023135 154 MRIVKDYNQYVTRNLDRGYTRKE---LGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVA 230 (287)
Q Consensus 154 ~RI~~~yd~y~~Rnl~rg~~~~~---lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 230 (287)
..+..+.+.....|...|.+.+. ....+...+-++-=.-|-+|+|+|.+.++..-+++--+.+++.+-.+...-||-
T Consensus 339 ~~l~~~s~~~~~~n~~~~~~~~~~~~~~p~~~~~~v~~qI~PiLefrD~i~k~I~~~IekIPgL~~l~e~i~e~l~~fVf 418 (606)
T PF07217_consen 339 DELQANSEAQQQENQRSGGNDNVVSPMSPEEDPQEVHQQIYPILEFRDRIMKSISEAIEKIPGLESLIEKISEQLTVFVF 418 (606)
T ss_pred HHHHHHHHHHHhhccccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 45556666666666653332221 111222223333334467788888887777777766666777888888888888
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHhhccCCCCCcCCCCCCCccccCCCC
Q 023135 231 GFLEMFEERCHKMGTAIKDRIQERLRGQHLIGFIYDKEDDDDYYYDDDS 279 (287)
Q Consensus 231 ~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (287)
+.|.-|-. -|.......|....+.-...+.+++.|-|.|+..
T Consensus 419 s~laPfi~-------Pii~q~~~~L~~gSs~Vi~ss~~~Q~evf~d~~~ 460 (606)
T PF07217_consen 419 SLLAPFIR-------PIIKQVSSELKTGSSEVIDSSADDQYEVFNDPNC 460 (606)
T ss_pred HHHHHHHH-------HHHHHHHHHHHhhhHHHHHhhhhcccccccCCCC
Confidence 88887743 3455555566555554444445667777777655
No 118
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=29.73 E-value=18 Score=28.78 Aligned_cols=9 Identities=44% Similarity=0.619 Sum_probs=0.0
Q ss_pred CccccCCCC
Q 023135 271 DDYYYDDDS 279 (287)
Q Consensus 271 ~~~~~~~~~ 279 (287)
|+|++++.+
T Consensus 33 DD~ddd~~D 41 (81)
T PF14812_consen 33 DDYDDDYED 41 (81)
T ss_dssp ---------
T ss_pred hcccccccc
Confidence 334444433
No 119
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=29.07 E-value=1e+02 Score=26.51 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc
Q 023135 15 EPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC 84 (287)
Q Consensus 15 ~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~ 84 (287)
-||.-|-++|.+.|.+|+ .++.+|.+-+-...+|+|+.-++ .| +. .--.-.+.|++.+..+
T Consensus 26 yp~~vRiIrv~CsGrvn~------~fvl~Al~~GaDGV~v~GC~~ge-CH-y~-~GN~ka~rR~~~lke~ 86 (132)
T COG1908 26 YPPNVRIIRVMCSGRVNP------EFVLKALRKGADGVLVAGCKIGE-CH-YI-SGNYKAKRRMELLKEL 86 (132)
T ss_pred CCCceEEEEeeccCccCH------HHHHHHHHcCCCeEEEecccccc-ee-ee-ccchHHHHHHHHHHHH
Confidence 367788889999999997 45566665542236777777665 33 22 2345678888887753
No 120
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=28.83 E-value=1.5e+02 Score=30.00 Aligned_cols=89 Identities=15% Similarity=0.019 Sum_probs=55.0
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc--c-C-Cccccc-CCCC
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC--R-W-VDEVIP-DAPW 96 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~--k-~-VDeVvi-~~p~ 96 (287)
++|++.=|+||+|.||-.+.+.|....+| -|+--|-... | .-=++.+.|++..+.+ . | =|.+++ ..||
T Consensus 184 k~vvafQTRNp~HraHEyl~K~Al~~vdg-llv~plVG~t-----k-~gD~~~e~rm~~ye~l~~~Yyp~dr~~Ls~~~~ 256 (397)
T COG2046 184 KTVVAFQTRNPPHRAHEYLQKRALEKVDG-LLVHPLVGAT-----K-PGDIPDEVRMEYYEALLKHYYPPDRVFLSVLPA 256 (397)
T ss_pred eEEEEEecCCCchHHHHHHHHHHHHhcCc-EEEEeeeccc-----c-CCCchHHHHHHHHHHHHHhCCCCCcEEEEecHH
Confidence 47899999999999999999999987643 2222222221 1 2357888898877765 1 2 355554 2343
Q ss_pred C-----ch----HHHHh-hcCCCEEEeCCCc
Q 023135 97 V-----VT----QDFLD-KHQIDYVAHDSLP 117 (287)
Q Consensus 97 ~-----~t----~efl~-~~~iD~Vv~G~d~ 117 (287)
. +- -.+++ .+++.-++.|-|.
T Consensus 257 aMRyagPrEa~~HaIIRkNyGcTHfIVGRDH 287 (397)
T COG2046 257 AMRYAGPREALLHAIIRKNYGCTHFIVGRDH 287 (397)
T ss_pred HhhhcCcHHHHHHHHHHhhcCCeeeeecCCC
Confidence 1 11 12233 3578777777653
No 121
>PF00976 ACTH_domain: Corticotropin ACTH domain; InterPro: IPR013531 Pro-opiomelanocortin is present in high levels in the pituitary and is processed into 3 major peptide families: adrenocorticotrophin (ACTH); alpha-, beta- and gamma-melanocyte- stimulating hormones (MSH); and beta-endorphin []. ACTH regulates the synthesis and release of glucocorticoids and, to some extent, aldosterone in the adrenal cortex. It is synthesised and released in response to corticotrophin-releasing factor at times of stress (i.e. heat, cold, infection, etc.), its release leading to increased metabolism. The action of MSH in man is poorly understood, but it may be involved in temperature regulation []. Full activity of ACTH resides in the first 20 N-terminal amino acids, the first 13 of which are identical to alpha-MSH [, ]. The function of this region is not known, though it is found near the centre of these proteins.
Probab=28.30 E-value=37 Score=23.44 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=21.4
Q ss_pred ccccccCCCCCCCCCCCeEEEEcCcc
Q 023135 5 KVVREGTNSAEPPRDRPVRVYADGIY 30 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~r~~rVy~~G~F 30 (287)
.|.-|-|..|.-...||++||.+|.=
T Consensus 3 ~mehfrwgkp~g~KRRPvKVypn~~E 28 (39)
T PF00976_consen 3 SMEHFRWGKPVGRKRRPVKVYPNGAE 28 (39)
T ss_pred cccceeccCCCCcccCcceeCCCCcc
Confidence 35678899998889999999988764
No 122
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=28.22 E-value=77 Score=32.00 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=22.6
Q ss_pred eEEEEc--CccCcCCHHHHH------HHHHHhccCC-CCEEEEEEe
Q 023135 22 VRVYAD--GIYDLFHFGHAR------ALEQAKKLFP-NTYLLVGCN 58 (287)
Q Consensus 22 ~rVy~~--G~FDlfH~GHi~------~L~qAk~lf~-gd~LIVGV~ 58 (287)
+.+|+. -+++.+|+||++ +|.+..++.+ ++..+.|++
T Consensus 24 v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~t 69 (463)
T PRK00260 24 VKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNIT 69 (463)
T ss_pred ceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCC
Confidence 345544 478999999986 4555555541 244455554
No 123
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=27.51 E-value=2.1e+02 Score=21.72 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=30.8
Q ss_pred hHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHHH
Q 023135 99 TQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLIM 154 (287)
Q Consensus 99 t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~ 154 (287)
..++|..+++|+|+.+.. +...+..+++.| +++..+. -+..++++
T Consensus 55 ~~~~l~~~~v~~vi~~~i--------G~~~~~~l~~~gI~v~~~~~---~~i~~vl~ 100 (103)
T cd00851 55 AAEFLADEGVDVVIVGGI--------GPRALNKLRNAGIKVYKGAE---GTVEEAIE 100 (103)
T ss_pred HHHHHHHcCCCEEEeCCC--------CcCHHHHHHHCCCEEEEcCC---CCHHHHHH
Confidence 567888899999999852 345788999999 5554333 24444443
No 124
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=5.1e+02 Score=25.46 Aligned_cols=120 Identities=22% Similarity=0.158 Sum_probs=65.4
Q ss_pred eEEEEcCc-cCcCCH------HHH-HHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHH-HHHHHHhc--cCCccc
Q 023135 22 VRVYADGI-YDLFHF------GHA-RALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKE-RYESLRHC--RWVDEV 90 (287)
Q Consensus 22 ~rVy~~G~-FDlfH~------GHi-~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eE-R~e~V~~~--k~VDeV 90 (287)
..||+++. |-+=+. .++ ..++.|.+. |..++|.++.=. + ....+ -.+.|..+ -.||.|
T Consensus 28 DaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~--~-------~~~~~~~~~~l~~l~e~GvDav 96 (347)
T COG0826 28 DAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSA--GKKVYVAVNTLL--H-------NDELETLERYLDRLVELGVDAV 96 (347)
T ss_pred CEEEeCCcccccccccccCCHHHHHHHHHHHHHc--CCeEEEEecccc--c-------cchhhHHHHHHHHHHHcCCCEE
Confidence 35777776 443222 222 334445555 466777666532 1 11111 12333332 368888
Q ss_pred ccCCCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCCChHHHHHHHHHhh
Q 023135 91 IPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGISTSDLIMRIVKDY 160 (287)
Q Consensus 91 vi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~giSTS~II~RI~~~y 160 (287)
|+.+|.. ..++++..||.=+|.+..-.. ......+.++++| +-+.++| -+|..+|+ +|.++-
T Consensus 97 iv~Dpg~--i~l~~e~~p~l~ih~S~q~~v---~N~~~~~f~~~~G~~rvVl~r--Els~~ei~-~i~~~~ 159 (347)
T COG0826 97 IVADPGL--IMLARERGPDLPIHVSTQANV---TNAETAKFWKELGAKRVVLPR--ELSLEEIK-EIKEQT 159 (347)
T ss_pred EEcCHHH--HHHHHHhCCCCcEEEeeeEec---CCHHHHHHHHHcCCEEEEeCc--cCCHHHHH-HHHHhC
Confidence 8888853 467777788777776643221 1223456788889 4445566 56777764 454444
No 125
>PHA00649 hypothetical protein
Probab=27.11 E-value=2.2e+02 Score=22.34 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhc
Q 023135 206 KIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRG 257 (287)
Q Consensus 206 ~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (287)
++.++...+ ++..+|+.-++ .+||-.-+--...++.++|--++..|..
T Consensus 35 ~VEEFr~D~-~~~Rr~RKA~D---~G~L~~VGL~~~~iGAA~W~G~~s~Lgg 82 (83)
T PHA00649 35 QVEEFREDL-RFGRRMRKAAD---HGFLALVGLVAVALGAAVWAGITSKLGG 82 (83)
T ss_pred HHHHHHHHH-HHHHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334454444 46789998887 8999999988888899999999988753
No 126
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=26.11 E-value=45 Score=34.31 Aligned_cols=29 Identities=38% Similarity=0.619 Sum_probs=21.7
Q ss_pred CCeEEEEcCc--cCcCCHHHHH------HHHHHhccC
Q 023135 20 RPVRVYADGI--YDLFHFGHAR------ALEQAKKLF 48 (287)
Q Consensus 20 r~~rVy~~G~--FDlfH~GHi~------~L~qAk~lf 48 (287)
..+.+|+.|- ||..|+||++ +|.+..+..
T Consensus 20 ~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~ 56 (481)
T PRK14534 20 SDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLL 56 (481)
T ss_pred CceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHc
Confidence 3567899885 9999999986 355666554
No 127
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=25.86 E-value=1.6e+02 Score=27.06 Aligned_cols=88 Identities=14% Similarity=0.016 Sum_probs=49.2
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-c-C--Cccccc-CCCC--
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-R-W--VDEVIP-DAPW-- 96 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k-~--VDeVvi-~~p~-- 96 (287)
|++-=+-+|+|.||..+++.|.... ++.|+|--.-.. .| .--++.+-|+++.+.+ . | -+.|++ .-|+
T Consensus 23 VvafqtrnPlHraHe~l~~~a~e~~-~~~lll~plvG~----~k-~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~m 96 (215)
T PF01747_consen 23 VVAFQTRNPLHRAHEYLMRRALEKA-GDGLLLHPLVGP----TK-PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLPM 96 (215)
T ss_dssp EEEEEESS---HHHHHHHHHHHHHH-TSEEEEEEBESB-----S-TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCcEEEEeccCC----CC-cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCchh
Confidence 4444459999999999999999886 455554322211 12 2378999999988875 2 2 244443 1222
Q ss_pred ---CchHHHH-----hhcCCCEEEeCCCc
Q 023135 97 ---VVTQDFL-----DKHQIDYVAHDSLP 117 (287)
Q Consensus 97 ---~~t~efl-----~~~~iD~Vv~G~d~ 117 (287)
++..-.+ +.+++..++.|-++
T Consensus 97 r~aGPrEallhAiirkN~GcTh~IvGrdh 125 (215)
T PF01747_consen 97 RYAGPREALLHAIIRKNYGCTHFIVGRDH 125 (215)
T ss_dssp --SHHHHHHHHHHHHHHTT-SEEEE-TTT
T ss_pred cccCcHHHHHHHHHHHHCCCceEEeCCcC
Confidence 1111222 34699999999864
No 128
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=24.75 E-value=5.4e+02 Score=23.45 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=36.4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHH
Q 023135 189 MNMGLKKLREKVKKHQEKIQIV-AKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIK 248 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~ 248 (287)
-+....+++++..+......+. ...+......|+..+......|-.+=+.+...|.+.++
T Consensus 122 ~~k~~~Kl~kk~~k~~~~~~~~~~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~ 182 (228)
T cd07650 122 SQKKWDKLKKKHSKASSKAVSAAVSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLL 182 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555543332222 45566778999999887777776665556665555554
No 129
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=24.32 E-value=1.1e+02 Score=31.13 Aligned_cols=39 Identities=28% Similarity=0.565 Sum_probs=24.2
Q ss_pred CeEEEEcC--ccCcCCHHHHH------HHHHHhccCC-CCEEEEEEec
Q 023135 21 PVRVYADG--IYDLFHFGHAR------ALEQAKKLFP-NTYLLVGCNN 59 (287)
Q Consensus 21 ~~rVy~~G--~FDlfH~GHi~------~L~qAk~lf~-gd~LIVGV~s 59 (287)
.+.+|+.| ++|..|+||++ +|.+..++.+ .+..+.|++.
T Consensus 21 ~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD 68 (465)
T TIGR00435 21 KVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITD 68 (465)
T ss_pred cceEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 44566665 78999999986 3445444431 2455666653
No 130
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=24.32 E-value=4.5e+02 Score=22.44 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=47.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhccCCCCC
Q 023135 189 MNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMGTAIKDRIQERLRGQHLIGF 263 (287)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (287)
-.+-++.|-+.....+.+....+ .+....|.+.....+.++.......-..++.++-+|+...|.+-.-|+.
T Consensus 37 G~k~F~~LVk~Ge~~e~~~~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~ 108 (132)
T PF05597_consen 37 GSKVFEALVKEGEKLEKKTRKKA---EEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSR 108 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 33445555555555555444433 3345666677777777777777776777888888888888888777654
No 131
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=24.24 E-value=2.8e+02 Score=25.34 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=18.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Q 023135 188 RMNMGLKKLREKVKKHQEKIQIVA 211 (287)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~ 211 (287)
.+|..|.+|++-+++..+++..+.
T Consensus 120 emQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 120 EMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888877776554
No 132
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=24.01 E-value=3.7e+02 Score=24.90 Aligned_cols=55 Identities=7% Similarity=0.170 Sum_probs=34.6
Q ss_pred hhHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Q 023135 184 EKRLRMNMGLKKLREKVKKHQE----KIQIVAKTASMRRNEWVENADRLVAGFLEMFEE 238 (287)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~ 238 (287)
+.+.+|...+++..+.+..+.. ++..-...+..++.+|+.-+...+..+-..+..
T Consensus 138 ~ek~kL~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 138 EEKRKLEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444566666666666665433 222323467788999999998877766555544
No 133
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=23.74 E-value=49 Score=31.95 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=5.9
Q ss_pred CHHHHHHHHHhc
Q 023135 73 TDKERYESLRHC 84 (287)
Q Consensus 73 s~eER~e~V~~~ 84 (287)
+.-+|+-+-.+|
T Consensus 58 ~s~qrlp~Ca~C 69 (314)
T PF06524_consen 58 QSVQRLPMCAHC 69 (314)
T ss_pred hhhhcCchhhhc
Confidence 444455555554
No 134
>PRK13753 dihydropteroate synthase; Provisional
Probab=23.16 E-value=6.7e+02 Score=24.03 Aligned_cols=162 Identities=19% Similarity=0.211 Sum_probs=89.9
Q ss_pred EEcCccCcCCHHH-----HHHHHHHhccC--CCCEEEEEEecCccccccCC-CCCCCHHHHH---HHHHhccCCcccc-c
Q 023135 25 YADGIYDLFHFGH-----ARALEQAKKLF--PNTYLLVGCNNDEDTHKYKG-KTVMTDKERY---ESLRHCRWVDEVI-P 92 (287)
Q Consensus 25 y~~G~FDlfH~GH-----i~~L~qAk~lf--~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~---e~V~~~k~VDeVv-i 92 (287)
+++=|-|-|.-|- -..+++|..+. +.+.+=||-.|.. .| .||-.++|.. ..|+.++-.+-.+ +
T Consensus 7 IlNvTPDSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTr-----Pga~~vs~eeE~~Rv~pvI~~l~~~~~~ISI 81 (279)
T PRK13753 7 ILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASH-----PDARPVSPADEIRRIAPLLDALSDQMHRVSI 81 (279)
T ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CCCCcCCHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 4444445554443 36677777653 2467778776652 23 3677777777 3555554322112 2
Q ss_pred CCCCCchHHHHhhcCCCEEEeCCCcccCCCC-CCccHHHHHHhcC-eEEEe--cccCC-------CChHHHHHHHHHhhH
Q 023135 93 DAPWVVTQDFLDKHQIDYVAHDSLPYADATG-SGKDVYEFVKSIG-KFKET--KRTDG-------ISTSDLIMRIVKDYN 161 (287)
Q Consensus 93 ~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g-~~~d~y~~lK~~G-~~~~~--~rT~g-------iSTS~II~RI~~~yd 161 (287)
++...-..+..-+.++|+|= +. +| ......+.+.+.| .++.. ..++| ....+++..|..-+.
T Consensus 82 DT~~~~va~~al~aGadiIN-DV------sg~~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~ 154 (279)
T PRK13753 82 DSFQPETQRYALKRGVGYLN-DI------QGFPDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFE 154 (279)
T ss_pred ECCCHHHHHHHHHcCCCEEE-eC------CCCCchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHH
Confidence 33222233444456888652 21 11 1224556677776 22222 21122 123678888888888
Q ss_pred HHHHHHhhcCCchh----hhccchhh----hhHHHHhhhHHHHHH
Q 023135 162 QYVTRNLDRGYTRK----ELGVSYVK----EKRLRMNMGLKKLRE 198 (287)
Q Consensus 162 ~y~~Rnl~rg~~~~----~lnv~~~~----~~~~~~~~~~~~~~~ 198 (287)
.-+.+-++-|+.+. |-++||.| +..+.+=+++.+|+.
T Consensus 155 ~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~ 199 (279)
T PRK13753 155 ARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKS 199 (279)
T ss_pred HHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHH
Confidence 88889999999875 45899955 456666555555543
No 135
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.99 E-value=1.8e+02 Score=29.58 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=40.0
Q ss_pred CCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCc
Q 023135 19 DRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVV 98 (287)
Q Consensus 19 ~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~ 98 (287)
.+|.+|.+.+. -+.+..-.++++.+|+.+|+..+|+|=.. .+.++. +++..+.+||.|+.+..-..
T Consensus 62 ~~pdvVgis~~-t~~~~~a~~~~~~~k~~~P~~~iV~GG~h---------~t~~~~----~~l~~~p~vD~Vv~GEGE~~ 127 (497)
T TIGR02026 62 HCPDLVLITAI-TPAIYIACETLKFARERLPNAIIVLGGIH---------PTFMFH----QVLTEAPWIDFIVRGEGEET 127 (497)
T ss_pred cCcCEEEEecC-cccHHHHHHHHHHHHHHCCCCEEEEcCCC---------cCcCHH----HHHhcCCCccEEEeCCcHHH
Confidence 35666666543 34455555777778888888777776111 012221 34445667888887654333
Q ss_pred hHHHHh
Q 023135 99 TQDFLD 104 (287)
Q Consensus 99 t~efl~ 104 (287)
..++++
T Consensus 128 ~~~Ll~ 133 (497)
T TIGR02026 128 VVKLIA 133 (497)
T ss_pred HHHHHH
Confidence 344444
No 136
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=22.60 E-value=1.9e+02 Score=29.05 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=54.5
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEE-EEecCccccccCCCCCCCHHHHHHHHHhc-c-C--Cccccc-CCC
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLV-GCNNDEDTHKYKGKTVMTDKERYESLRHC-R-W--VDEVIP-DAP 95 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIV-GV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k-~--VDeVvi-~~p 95 (287)
..|++-=+-+|+|.||..+.+.|...+ +-|+| -+..- .| .--++.+-|+++.+++ + | -+.|++ .-|
T Consensus 187 ~~VvafqTrnP~HraHe~l~~~a~e~~--d~lll~plvG~-----~k-~~di~~~~r~~~~~~~~~~y~p~~~v~l~~lp 258 (391)
T PRK04149 187 KTVVAFQTRNPPHRAHEYLQKCALEIV--DGLLLNPLVGE-----TK-SGDIPAEVRMEAYEALLKNYYPKDRVLLSVTP 258 (391)
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhc--CeEEEecCcCC-----CC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 357778889999999999999998885 43333 12111 11 2368999999988876 2 2 133322 122
Q ss_pred C-----CchHHHH-----hhcCCCEEEeCCCc
Q 023135 96 W-----VVTQDFL-----DKHQIDYVAHDSLP 117 (287)
Q Consensus 96 ~-----~~t~efl-----~~~~iD~Vv~G~d~ 117 (287)
+ ++..-.+ +.+++..++.|-++
T Consensus 259 ~~mryAGPrEa~lhAivrkN~GcTh~IvGrDH 290 (391)
T PRK04149 259 AAMRYAGPREAIFHAIVRKNYGCTHFIVGRDH 290 (391)
T ss_pred chhcccCcHHHHHHHHHHHhCCCCeEEECCCC
Confidence 1 2222222 34688888888754
No 137
>PRK10263 DNA translocase FtsK; Provisional
Probab=22.34 E-value=80 Score=36.55 Aligned_cols=14 Identities=43% Similarity=0.511 Sum_probs=6.2
Q ss_pred CCCCCCCccccCCC
Q 023135 265 YDKEDDDDYYYDDD 278 (287)
Q Consensus 265 ~~~~~~~~~~~~~~ 278 (287)
.+.+.||++|+||+
T Consensus 208 ~~~~~~~~~~~~~~ 221 (1355)
T PRK10263 208 DDTWVDEDEYEDDE 221 (1355)
T ss_pred Cccccccccccccc
Confidence 33444444444444
No 138
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=22.09 E-value=4.6e+02 Score=25.03 Aligned_cols=17 Identities=12% Similarity=0.423 Sum_probs=11.8
Q ss_pred HHHHhhcCCCEEEeCCC
Q 023135 100 QDFLDKHQIDYVAHDSL 116 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d 116 (287)
.++++++++|+|+.+..
T Consensus 68 ~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 68 RAVIEREKPDYIVPEIE 84 (395)
T ss_pred HHHHHHhCCCEEEEeeC
Confidence 45667778888877643
No 139
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=1.4e+02 Score=27.23 Aligned_cols=17 Identities=35% Similarity=0.270 Sum_probs=7.2
Q ss_pred CCCcCCCCCCCccccCC
Q 023135 261 IGFIYDKEDDDDYYYDD 277 (287)
Q Consensus 261 ~~~~~~~~~~~~~~~~~ 277 (287)
.+.++|+|++|-.-++|
T Consensus 130 ~~~~~dEDdedvd~~dd 146 (184)
T KOG4032|consen 130 GGSESDEDDEDVDEEDD 146 (184)
T ss_pred CCCcccccccccccchh
Confidence 44444444443333333
No 140
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=21.60 E-value=94 Score=24.99 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.5
Q ss_pred ccCCCChHHHHHHHHHhhHHHHH
Q 023135 143 RTDGISTSDLIMRIVKDYNQYVT 165 (287)
Q Consensus 143 rT~giSTS~II~RI~~~yd~y~~ 165 (287)
|+.|-|.++++..|.++||.++.
T Consensus 13 rCSGnSvsEVL~~~k~N~D~~~a 35 (97)
T PF11043_consen 13 RCSGNSVSEVLDNIKNNYDAFMA 35 (97)
T ss_pred cccCccHHHHHHHHHHHHHHHHc
Confidence 67899999999999999998753
No 141
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=21.34 E-value=3.8e+02 Score=25.31 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchHHHHhhcCCCEEE
Q 023135 33 FHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQDFLDKHQIDYVA 112 (287)
Q Consensus 33 fH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~efl~~~~iD~Vv 112 (287)
...|++..|.+.|+..|+..+++.|..-....... .-+.+.+.|...+.++ .+++++++.|-|-
T Consensus 67 ~~~~~~~~~~~lk~~~p~lkvl~siGG~~~s~~f~-~~~~~~~~r~~Fi~si---------------v~~l~~~~fDGid 130 (322)
T cd06548 67 PLKGNFGQLRKLKQKNPHLKILLSIGGWTWSGGFS-DAAATEASRAKFADSA---------------VDFIRKYGFDGID 130 (322)
T ss_pred cchhHHHHHHHHHHhCCCCEEEEEEeCCCCCCCch-hHhCCHHHHHHHHHHH---------------HHHHHhcCCCeEE
Confidence 35689999999898888889999998633211010 1245667776666654 3677777777765
Q ss_pred eC
Q 023135 113 HD 114 (287)
Q Consensus 113 ~G 114 (287)
.+
T Consensus 131 iD 132 (322)
T cd06548 131 ID 132 (322)
T ss_pred EC
Confidence 54
No 142
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=20.96 E-value=2.1e+02 Score=27.54 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=26.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHh-h-hhhhhHHHHHHHH
Q 023135 218 RNEWVENADRLVAGFLEMFEE-R-CHKMGTAIKDRIQ 252 (287)
Q Consensus 218 ~~~w~~~~~~~~~~f~~~f~~-~-~~~~~~~~~~~~~ 252 (287)
+..|.+..+-.+..|++.|.. . ...+|++|-+.-.
T Consensus 164 ~~~w~~~L~pIl~~fi~s~~~~~~~~~FW~~i~~~~~ 200 (299)
T PF14388_consen 164 MEWWASLLRPILDRFIASFDGPPEDKDFWNRIVHYES 200 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHhcccC
Confidence 688999999999999999984 4 4555555554433
No 143
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=20.52 E-value=1.3e+02 Score=24.99 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhHHHHHHHhhcCCchhhhccchhhhhHHHHhhhHHHHHHHHHHHHHHHH
Q 023135 150 SDLIMRIVKDYNQYVTRNLDRGYTRKELGVSYVKEKRLRMNMGLKKLREKVKKHQEKIQ 208 (287)
Q Consensus 150 S~II~RI~~~yd~y~~Rnl~rg~~~~~lnv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (287)
.+++.=|.++|..|+. |......-+--|.-++..=..++..|..+++.+.+.++.+.
T Consensus 44 ~~Li~lIN~dY~dFv~--Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~ 100 (133)
T PF06148_consen 44 NELIELINDDYADFVS--LSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIE 100 (133)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHH
T ss_pred HHHHHHHHhhHHHHHH--HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889998875 44444333333444444444444444444444444433333
No 144
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.48 E-value=1.5e+02 Score=23.16 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=12.4
Q ss_pred hHHHHhh-cCCCEEEeCC
Q 023135 99 TQDFLDK-HQIDYVAHDS 115 (287)
Q Consensus 99 t~efl~~-~~iD~Vv~G~ 115 (287)
..++++. ..+|+++.|.
T Consensus 95 ~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 95 PEEILREYPGIDYVVRGE 112 (121)
T ss_dssp HHHHHHHHHTSEEEEEET
T ss_pred hHHHhccCcCcceecCCC
Confidence 3445655 7899999985
No 145
>PHA03187 UL14 tegument protein; Provisional
Probab=20.36 E-value=7.1e+02 Score=24.41 Aligned_cols=49 Identities=10% Similarity=0.371 Sum_probs=31.5
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHh
Q 023135 185 KRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVENADRLV-AGFLEMFEE 238 (287)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~f~~~f~~ 238 (287)
..++....|..++.|+..++.+|.+-.. +....+..++|+ .+|++.|..
T Consensus 59 rqLRS~aRveaVeQKar~Iq~rVEeQ~a-----~r~iL~~nRRfL~PdFid~lD~ 108 (322)
T PHA03187 59 RYMQAHSRVGRVEQNARALAQRVEAQAA-----VGEILDRHRRFLHPDFIDKFDS 108 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhhcChHHHHHHHH
Confidence 4566777777888888777777765432 223344445554 579998875
Done!