Query 023135
Match_columns 287
No_of_seqs 263 out of 1700
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:56:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hl4_A Choline-phosphate cytid 100.0 1.4E-47 4.6E-52 348.8 14.5 167 15-183 70-236 (236)
2 3elb_A Ethanolamine-phosphate 100.0 2.7E-35 9.3E-40 280.2 12.1 157 4-163 183-341 (341)
3 3elb_A Ethanolamine-phosphate 100.0 2.6E-32 8.9E-37 259.7 14.1 141 17-161 3-143 (341)
4 1coz_A Protein (glycerol-3-pho 99.9 1.2E-22 4.1E-27 164.9 9.3 126 21-157 1-127 (129)
5 2b7l_A Glycerol-3-phosphate cy 99.9 1.6E-22 5.4E-27 165.1 9.3 127 21-158 1-128 (132)
6 3glv_A Lipopolysaccharide core 99.9 1.4E-21 4.9E-26 163.1 10.1 134 21-161 2-140 (143)
7 3nv7_A Phosphopantetheine aden 99.8 3.6E-20 1.2E-24 158.6 8.2 129 21-157 2-137 (157)
8 4f3r_A Phosphopantetheine aden 99.8 9.1E-20 3.1E-24 156.6 9.9 130 21-158 5-140 (162)
9 3k9w_A Phosphopantetheine aden 99.8 2.4E-18 8.1E-23 151.2 11.7 130 21-158 22-158 (187)
10 1vlh_A Phosphopantetheine aden 99.7 1.3E-17 4.6E-22 143.3 11.4 126 22-158 13-148 (173)
11 3nbk_A Phosphopantetheine aden 99.7 2.5E-17 8.7E-22 144.0 13.1 133 16-157 16-155 (177)
12 3f3m_A Phosphopantetheine aden 99.7 2.1E-17 7.3E-22 142.7 12.0 129 21-158 3-139 (168)
13 3nd5_A Phosphopantetheine aden 99.7 1.2E-17 4E-22 144.7 9.9 129 21-158 2-139 (171)
14 1qjc_A Phosphopantetheine aden 99.7 4.2E-16 1.4E-20 129.6 11.4 126 22-158 2-137 (158)
15 1o6b_A Phosphopantetheine aden 99.6 4.3E-15 1.5E-19 125.6 11.2 127 22-158 3-138 (169)
16 1od6_A PPAT, phosphopantethein 99.6 1.8E-14 6.3E-19 120.1 12.6 124 24-158 3-138 (160)
17 3do8_A Phosphopantetheine aden 99.5 7.3E-16 2.5E-20 130.4 1.9 127 23-159 2-143 (148)
18 2qtr_A Nicotinate (nicotinamid 99.5 1.8E-14 6.1E-19 123.2 8.3 131 22-158 3-165 (189)
19 1kam_A Deamido-NAD(+), nicotin 99.5 1.2E-13 4.2E-18 119.5 13.1 131 22-158 8-170 (194)
20 1yum_A 'probable nicotinate-nu 99.5 8.5E-13 2.9E-17 119.2 15.0 93 21-116 23-129 (242)
21 3h05_A Uncharacterized protein 99.4 2E-13 6.7E-18 118.5 8.0 129 22-159 3-149 (177)
22 1k4m_A NAMN adenylyltransferas 99.4 1.9E-12 6.4E-17 113.7 13.3 90 24-116 6-109 (213)
23 1mrz_A Riboflavin kinase/FMN a 99.4 4.5E-13 1.6E-17 124.9 8.8 130 24-159 2-147 (293)
24 2h29_A Probable nicotinate-nuc 99.4 1.9E-12 6.7E-17 111.4 9.4 132 22-158 3-165 (189)
25 1lw7_A Transcriptional regulat 99.3 4.6E-12 1.6E-16 118.6 12.3 124 22-156 3-154 (365)
26 1f9a_A Hypothetical protein MJ 99.3 1.3E-11 4.5E-16 104.7 13.0 121 23-158 2-135 (168)
27 1ej2_A Nicotinamide mononucleo 99.3 2.4E-11 8.2E-16 104.2 13.0 123 22-158 4-141 (181)
28 2x0k_A Riboflavin biosynthesis 99.2 4.6E-11 1.6E-15 113.3 11.0 143 23-168 17-183 (338)
29 2qjo_A Bifunctional NMN adenyl 99.2 4E-11 1.4E-15 109.7 8.4 126 21-158 7-150 (341)
30 3op1_A Macrolide-efflux protei 99.1 2.4E-10 8.3E-15 107.4 9.0 145 23-172 22-190 (308)
31 1kqn_A Nmnat, nicotinamide mon 99.1 2.6E-10 8.9E-15 105.2 8.1 71 21-92 8-82 (279)
32 1nup_A FKSG76; NAD biosynthesi 99.0 5.8E-10 2E-14 100.9 8.3 70 21-90 6-78 (252)
33 2qjt_B Nicotinamide-nucleotide 99.0 3.6E-10 1.2E-14 104.2 5.6 59 21-83 7-65 (352)
34 3gmi_A UPF0348 protein MJ0951; 98.9 1.8E-08 6.2E-13 96.4 12.7 144 22-172 53-264 (357)
35 2ejc_A Pantoate--beta-alanine 98.4 5.8E-07 2E-11 83.5 8.4 68 22-93 23-93 (280)
36 1jhd_A Sulfate adenylyltransfe 97.2 0.0045 1.5E-07 59.9 13.0 91 23-118 194-299 (396)
37 1v8f_A Pantoate-beta-alanine l 97.0 0.0017 5.7E-08 60.2 8.4 64 23-92 21-87 (276)
38 1pei_A PEPC22; transferase, nu 96.2 0.0012 4.1E-08 40.6 0.8 19 216-234 8-26 (26)
39 3ag6_A Pantothenate synthetase 96.2 0.015 5.2E-07 54.0 8.5 64 24-93 28-94 (283)
40 3cov_A Pantothenate synthetase 96.1 0.013 4.5E-07 54.8 7.7 67 24-93 35-105 (301)
41 3q12_A Pantoate--beta-alanine 95.1 0.037 1.3E-06 51.6 6.7 63 23-92 27-95 (287)
42 1v47_A ATP sulfurylase; produc 94.8 0.047 1.6E-06 51.9 6.8 89 23-118 157-260 (349)
43 3inn_A Pantothenate synthetase 94.8 0.095 3.2E-06 49.4 8.5 63 23-92 45-113 (314)
44 3uk2_A Pantothenate synthetase 94.5 0.07 2.4E-06 49.6 6.8 66 24-92 24-92 (283)
45 3mxt_A Pantothenate synthetase 93.2 0.18 6.1E-06 46.9 7.0 56 32-92 35-94 (285)
46 3n8h_A Pantothenate synthetase 91.7 0.19 6.4E-06 46.4 5.1 65 23-92 26-94 (264)
47 1peh_A Pepnh1; transferase, nu 89.7 0.0048 1.6E-07 40.1 -5.2 34 182-215 1-34 (35)
48 1g8f_A Sulfate adenylyltransfe 82.1 4.2 0.00014 40.2 8.6 87 23-117 190-292 (511)
49 3viq_A SWI5-dependent recombin 81.1 9.8 0.00034 31.0 9.0 62 182-243 5-70 (122)
50 2gks_A Bifunctional SAT/APS ki 58.2 14 0.00047 36.6 5.9 55 23-84 165-220 (546)
51 1lyp_A CAP18; lipopolysacchari 56.5 20 0.00068 22.4 4.2 25 190-214 3-27 (32)
52 1r6x_A ATP:sulfate adenylyltra 52.3 22 0.00077 34.1 6.1 88 23-117 189-291 (395)
53 1deq_A Fibrinogen (alpha chain 49.5 1E+02 0.0035 29.7 10.1 40 184-223 60-99 (390)
54 3tqo_A Cysteinyl-tRNA syntheta 48.5 9.1 0.00031 37.5 2.8 23 18-40 22-46 (462)
55 1m8p_A Sulfate adenylyltransfe 44.9 18 0.00062 35.9 4.3 88 23-116 192-293 (573)
56 1li5_A Cysrs, cysteinyl-tRNA s 41.0 14 0.00048 35.7 2.8 21 19-39 20-42 (461)
57 3c8z_A Cysteinyl-tRNA syntheta 40.0 14 0.00047 35.1 2.5 21 19-39 37-59 (414)
58 3ghg_A Fibrinogen alpha chain; 33.0 1.1E+02 0.0038 30.7 7.7 17 147-163 60-76 (562)
59 3m91_B Prokaryotic ubiquitin-l 32.7 60 0.0021 22.0 4.0 14 221-234 27-40 (44)
60 1f7u_A Arginyl-tRNA synthetase 29.8 24 0.0008 35.6 2.4 27 13-39 136-164 (607)
61 2zue_A Arginyl-tRNA synthetase 28.6 31 0.001 34.8 3.0 43 12-55 111-161 (629)
62 3h99_A Methionyl-tRNA syntheta 26.6 33 0.0011 33.5 2.8 23 18-40 15-40 (560)
63 4gib_A Beta-phosphoglucomutase 25.1 2.9E+02 0.0099 22.8 9.3 111 34-167 118-248 (250)
64 3s84_A Apolipoprotein A-IV; fo 24.7 3.8E+02 0.013 24.0 9.3 6 192-197 67-72 (273)
65 3caz_A BAR protein; thermo-aci 24.1 3.5E+02 0.012 24.0 8.6 55 190-244 135-195 (294)
66 3ghg_A Fibrinogen alpha chain; 22.8 2.6E+02 0.0091 28.1 8.3 36 183-218 109-144 (562)
No 1
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-47 Score=348.84 Aligned_cols=167 Identities=61% Similarity=1.092 Sum_probs=138.1
Q ss_pred CCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCC
Q 023135 15 EPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDA 94 (287)
Q Consensus 15 ~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~ 94 (287)
..|..+|++||++|+||+||.||+++|++|+++|+|++|||||++|+.+++.||.|++|.+||+++|++|+|||+|++++
T Consensus 70 ~~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~Kg~pi~s~eER~e~v~~~k~VD~Vvv~~ 149 (236)
T 3hl4_A 70 GTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNA 149 (236)
T ss_dssp CCCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHTCCCSSCHHHHHHHHHTBTTCSEEESSC
T ss_pred CCCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcCCCCCCCHHHHHHHHHHhCCCCeEEECC
Confidence 45678999999999999999999999999999998899999999999988889999999999999999999999999999
Q ss_pred CCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhHHHHHHHhhcCCch
Q 023135 95 PWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYNQYVTRNLDRGYTR 174 (287)
Q Consensus 95 p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd~y~~Rnl~rg~~~ 174 (287)
||.++.+|+++++||+|+||++++.+. .+++.|+.++++|++++++||+|+|||+|++||+++|+.|++||++|||++
T Consensus 150 p~~l~~d~i~~~~~d~Vv~GDd~~~~~--~~~d~y~~lk~~G~~~~v~rt~giSTT~Ii~RI~~~~~~y~~R~l~rg~~~ 227 (236)
T 3hl4_A 150 PWTLTPEFLAEHRIDFVAHDDIPYSSA--GSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTA 227 (236)
T ss_dssp CSSCCHHHHHHTTCCEEEEESSCCCCS--SCSCTTHHHHHTTCEEEECCCTTCCHHHHHHHHHHHHHC------------
T ss_pred cCcCcHHHHHHcCCCEEEECCccccCC--CchhHHHHHHhCCeEEEeccCCCCCHHHHHHHHHHhHHHHHHHHhcCCCCH
Confidence 999999999999999999999887643 357899999999999999999999999999999999999999999999999
Q ss_pred hhhccchhh
Q 023135 175 KELGVSYVK 183 (287)
Q Consensus 175 ~~lnv~~~~ 183 (287)
+||||||+|
T Consensus 228 ~~~~~~~~~ 236 (236)
T 3hl4_A 228 KELNVSFIN 236 (236)
T ss_dssp ---------
T ss_pred HHhCCcccC
Confidence 999999986
No 2
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=280.16 Aligned_cols=157 Identities=29% Similarity=0.572 Sum_probs=134.4
Q ss_pred cccccccCCCCCCCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC--CCCCCHHHHHHHH
Q 023135 4 RKVVREGTNSAEPPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG--KTVMTDKERYESL 81 (287)
Q Consensus 4 r~~~~~~~~~~~~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg--rpv~s~eER~e~V 81 (287)
+++.+|+.+.. |....++||++|+|||||.||+++|++|+++|++.+|||||++|+++++.|| +|+||.+||+++|
T Consensus 183 ~~~~~f~~g~~--~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v 260 (341)
T 3elb_A 183 QKIIQFASGKE--PQPGETVIYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSV 260 (341)
T ss_dssp HHHHHHCCCCC--CCTTCEEEEEEECCTTCCHHHHHHHHHHHTTSSSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHH
T ss_pred ceeeeeccCCC--CCCCCEEEEEecccCCCCHHHHHHHHHHHHhCCCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHH
Confidence 45666666644 3444568999999999999999999999999722299999999999988888 5999999999999
Q ss_pred HhccCCcccccCCCCCchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhH
Q 023135 82 RHCRWVDEVIPDAPWVVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 82 ~~~k~VDeVvi~~p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd 161 (287)
++|+|||+|++.+||.++.+|+++++||++++|.++.... ..+.|.|+.++..|+|..+++++|+|||+||+||++++.
T Consensus 261 ~~~~~vd~V~v~~~~~l~~~~~~~~~~~~iv~G~d~~~~~-~~g~d~y~~~k~~G~~~~i~~~~~~STt~ii~RI~~nr~ 339 (341)
T 3elb_A 261 LACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPD-RDGSDPYQEPKRRGIFRQIDSGSNLTTDLIVQRIITNRL 339 (341)
T ss_dssp HTBTTCCEEEEEECSSCCHHHHHHTTCSEEEECSSCCCCC-TTSCCTTHHHHHHTCEEECCCSCCCCHHHHHHHHHC---
T ss_pred HHcCCCCCEEECCCCcchHHHHHhcCCcEEEECCCCcccc-CCccchHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999876532 346789999999999999999999999999999999998
Q ss_pred HH
Q 023135 162 QY 163 (287)
Q Consensus 162 ~y 163 (287)
+|
T Consensus 340 ~~ 341 (341)
T 3elb_A 340 EY 341 (341)
T ss_dssp --
T ss_pred cC
Confidence 76
No 3
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.6e-32 Score=259.69 Aligned_cols=141 Identities=43% Similarity=0.746 Sum_probs=128.0
Q ss_pred CCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCC
Q 023135 17 PRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPW 96 (287)
Q Consensus 17 ~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~ 96 (287)
...||++|+++|+||+||.||+++|++|+++| ++|||||++|+.+.+.||+|++|.+||+++|++|+|||+|++.+||
T Consensus 3 ~~~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~--d~LiVgV~~d~~v~~~K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~ 80 (341)
T 3elb_A 3 GGRRAVRVWCDGCYDMVHYGHSNQLRQARAMG--DYLIVGVHTDEEIAKHKGPPVFTQEERYKMVQAIKWVDEVVPAAPY 80 (341)
T ss_dssp -CCCCCEEEEEECCCSCCHHHHHHHHHHHHTS--SEEEEEECCHHHHHHHSSCCSSCHHHHHHHHHHBTTCCEEEETCCS
T ss_pred CCCCceEEEEEeeCCCCCHHHHHHHHHHHHhC--CcCEEEeecCHHHhccCCCCCCCHHHHHHHHHHcCCCCEEEecCCC
Confidence 35678899999999999999999999999995 8999999999988878888999999999999999999999999999
Q ss_pred CchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHhhH
Q 023135 97 VVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 97 ~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~yd 161 (287)
..+.+|+++++||++|+|.|+..+. .+.+.|+.+++.|++++++||+|+|||+||+||+....
T Consensus 81 ~~~~efi~~~~~d~vV~G~D~~~g~--~~~~~~~~~k~~G~~~~~~~t~g~STT~ii~ri~~~~~ 143 (341)
T 3elb_A 81 VTTLETLDKYNCDFCVHGNDITLTV--DGRDTYEEVKQAGRYRECKRTQGVSTTDLVGRMLLVTK 143 (341)
T ss_dssp SCCHHHHHHTTCSEEEECSCCCBCT--TSCBTTHHHHHTTCEEECCCCTTCCHHHHHHHHHC---
T ss_pred CCHHHHHHHhCCCEEEECCCCCCCC--CCcchHHHHHhCCEEEEeCCCCCCCHHHHHHHHHHhcc
Confidence 8899999999999999999887653 45789999999999999999999999999999988654
No 4
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.88 E-value=1.2e-22 Score=164.90 Aligned_cols=126 Identities=33% Similarity=0.472 Sum_probs=105.4
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
|+++++.|+|||+|.||+.++++|++.+ +.++|+++.|+... .|+ .+++|.++|++++++|.+||.|++..+|..+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~--d~~~v~v~~~~~~~-~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~ 77 (129)
T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLG--DYLVVAISTDEFNL-QKQKKAYHSYEHRKLILETIRYVDEVIPEKNWEQK 77 (129)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTS--SEEEEEEECHHHHH-HHTCCCSSCHHHHHHHHTTBTTCCEEEEECCSTTH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHh-cCCCCCCCCHHHHHHHHHhcCCCCEEEeCCCHHHH
Confidence 3579999999999999999999999996 78999999987321 233 5799999999999999999999876677777
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIV 157 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~ 157 (287)
.+.++++++++++.|.|+. +. ++.+++.|.++.++++..||||.|+++|.
T Consensus 78 ~~~l~~~~~~~iv~G~D~~----~~----~~~L~~~~~v~~~~~~~~iSST~IR~~i~ 127 (129)
T 1coz_A 78 KQDIIDHNIDVFVMGDDWE----GK----FDFLKDQCEVVYLPRTEGISTTKIKEEIA 127 (129)
T ss_dssp HHHHHHTTCSEEEEEGGGT----TT----TGGGTTTSEEEEECCCTTCCHHHHHHTC-
T ss_pred HHHHHHhCCcEEEECCCCC----Cc----HHHHHhCCeEEEcCCCCCcCHHHHHHHHH
Confidence 7788999999999998752 21 23577788999999999999999988764
No 5
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.87 E-value=1.6e-22 Score=165.05 Aligned_cols=127 Identities=31% Similarity=0.460 Sum_probs=95.2
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHHhccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLRHCRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~~~k~VDeVvi~~p~~~t 99 (287)
|+++++.|+||++|.||+.+|++|++.+ +.++|+|+.|+... .++ .|++|.++|++++++|.+||.|++..+|..+
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~--~~~~v~v~~~~~~~-~~~~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~ 77 (132)
T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMG--DYLIVALSTDEFNQ-IKHKKSYYDYEQRKMMLESIRYVDLVIPEKGWGQK 77 (132)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTS--SEEEEEEECHHHHH-HTTCCCSSCHHHHHHHHHTBTTCCEEEEECCGGGH
T ss_pred CeEEEEeeecCcCCHHHHHHHHHHHHhC--CcEEEEEECCHHHh-ccCCCCCCCHHHHHHHHHhcCCCCEEEECCChHHH
Confidence 4579999999999999999999999996 68999999987432 233 5799999999999999999999886666667
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~ 158 (287)
.+.+++++|+++++|.|... . ++.+++.|.++.++++..||||.|+++|.+
T Consensus 78 ~~~~~~~~~~~iv~G~D~~~----~----~~~L~~~~~v~~i~~~~~iSST~IR~~i~~ 128 (132)
T 2b7l_A 78 EDDVEKFDVDVFVMGHDWEG----E----FDFLKDKCEVIYLKRTEGISTTKIKQELYG 128 (132)
T ss_dssp HHHHHHTTCCEEEECGGGTT----T----TGGGTTTSEEEECSSCC-------------
T ss_pred HHHHHHcCCCEEEECCCCcC----c----HHHHHhCCEEEEECCCCCcCHHHHHHHHHh
Confidence 77788999999999986522 1 235777899999999999999999988754
No 6
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.85 E-value=1.4e-21 Score=163.05 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=92.7
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQ 100 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~ 100 (287)
|++|++.|+||++|.||+.+|++|++++ +.++|+|+.|+.....+.+|++|.+||++++++|.+||.|++.+|.. ..
T Consensus 2 m~~v~~~G~FD~vH~GH~~li~~a~~~~--~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~-f~ 78 (143)
T 3glv_A 2 MIRVMATGVFDILHLGHIHYLKESKKLG--DELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEGD-MM 78 (143)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTS--SEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTTC-HH
T ss_pred ceEEEEEeecCCCCHHHHHHHHHHHHhC--CCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCchh-HH
Confidence 5689999999999999999999999995 78999999988665423358999999999999999999999877766 45
Q ss_pred HHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-e--EEEecc--cCCCChHHHHHHHHHhhH
Q 023135 101 DFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-K--FKETKR--TDGISTSDLIMRIVKDYN 161 (287)
Q Consensus 101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~--~~~~~r--T~giSTS~II~RI~~~yd 161 (287)
+++++++++++++|.+...+ .++..+..++.| . ++.... ...||||.|++.|.+.|.
T Consensus 79 ~~~~~l~~~~iv~G~d~~f~----~~~l~~~~~~~g~~v~vv~~~~~~~~~iSST~IR~~i~~~~~ 140 (143)
T 3glv_A 79 KTVIEVKPDIITLGYDQKFD----EAELQSKINKLGITVKIVRISKYDGQLNSSSSVRKKIMELIG 140 (143)
T ss_dssp HHHHHHCCSEEEECTTCHHH----HHHHHHHHHHHTCCCEEEECCCCC------------------
T ss_pred HHHHhcCCCEEEECCCCCCC----HHHHHHHHHHcCCeEEEEEeeccCCCcCCHHHHHHHHHHHhc
Confidence 78999999999999875331 234555666677 2 333333 357999999999988764
No 7
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.81 E-value=3.6e-20 Score=158.64 Aligned_cols=129 Identities=16% Similarity=0.043 Sum_probs=97.9
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~~~t 99 (287)
|++++++|+|||+|.||++++++|+++| |+|||||++|+ .| +|++|.+||+++++. ++.++.|.+....+++
T Consensus 2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~--D~viv~v~~~~----~K-~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~l~ 74 (157)
T 3nv7_A 2 QKVGIYPGTFDPVTNGHIDIIHRSSELF--EKLIVAVAHSS----AK-NPMFSLDERLKMIQLATKSFKNVECVAFEGLL 74 (157)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTSTTEEEEEECSCH
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHhC--CceEEEEccCC----CC-CCCCCHHHHHHHHHHHhcCCCcEEEEecCchH
Confidence 4589999999999999999999999997 89999999986 35 689999999999997 7889988764444578
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC---eEEEecccC---CCChHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG---KFKETKRTD---GISTSDLIMRIV 157 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G---~~~~~~rT~---giSTS~II~RI~ 157 (287)
.+++++++||++++|...-.++.. +-+.....+..+ ..++++.++ .+|||.|++.+.
T Consensus 75 ~~~~~~~~~~~ivrG~r~~~D~~y-e~~~a~~n~~l~~~ietv~l~~~~~~~~iSSt~vRe~~~ 137 (157)
T 3nv7_A 75 AYLAKEYHCKVLVRGLRVVSDFEY-ELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIA 137 (157)
T ss_dssp HHHHHHTTCCCBCCCCSCCCCHHH-HHHHHHHHHHSSCCCCCCCCCCCHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCcccchhhh-hHHHHHHHHHhCCCceEEEEcCCcccceeeHHHHHHHHH
Confidence 899999999999999654433310 111112223332 444555554 899999977654
No 8
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.80 E-value=9.1e-20 Score=156.62 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=93.8
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccCCCCCchH
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPDAPWVVTQ 100 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~~p~~~t~ 100 (287)
|++++++|+|||+|.||++++++|+++| |+|||||++|+ .| +|++|.++|+++++.+..+|.|.+....+++.
T Consensus 5 m~i~i~~GsFDPiH~GHl~li~~A~~~~--d~viv~v~~~~----~K-~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~ 77 (162)
T 4f3r_A 5 KPIAIYPGTFDPLTNGHVDIIERALPLF--NKIIVACAPTS----RK-DPHLKLEERVNLIADVLTDERVEVLPLTGLLV 77 (162)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGC--SEEEEEECCC-----------CCHHHHHHHHHHHCCCTTEEEEECCSCHH
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHHHC--CcEEEEEecCC----cc-CCCCCHHHHHHHHHHhhCCCCEEEEeccchHH
Confidence 4689999999999999999999999997 89999999886 34 68999999999999754448776655556789
Q ss_pred HHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhc--C-eEEEecccC---CCChHHHHHHHHH
Q 023135 101 DFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSI--G-KFKETKRTD---GISTSDLIMRIVK 158 (287)
Q Consensus 101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~--G-~~~~~~rT~---giSTS~II~RI~~ 158 (287)
+++++++++++++|.+...++.. +-......+.. + ..+++.+++ .||||.|++++..
T Consensus 78 ~~~~~~~~~~~v~G~r~~~Df~~-e~~~a~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~ 140 (162)
T 4f3r_A 78 DFAKTHQANFILRGLRAVSDFDY-EFQLAHMNYQLSPEIETIFLPAREGYSYVSGTMVREIVTL 140 (162)
T ss_dssp HHHHHTTCCEEEEEECSHHHHHH-HHHHHHHHHHHCTTCEEEEEECCGGGSSCCHHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCCchhhhhh-HHHHHHHHHHhCCCccEEEEECCcccccccHHHHHHHHHc
Confidence 99999999999999765444311 00111112233 2 455655554 8999998777653
No 9
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.76 E-value=2.4e-18 Score=151.20 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=98.8
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~~~t 99 (287)
|+++++.|+|||+|.||+.++++|+++| +.|+|+|++|+ .| +|++|.+||+++++. |+.+|.|++....+.+
T Consensus 22 mki~v~~GsFDpiH~GHl~li~~A~~~~--d~viv~v~~~p----~K-~~l~s~eeR~~ml~~~~~~v~~v~v~~f~~~~ 94 (187)
T 3k9w_A 22 MVVAVYPGTFDPLTRGHEDLVRRASSIF--DTLVVGVADSR----AK-KPFFSLEERLKIANEVLGHYPNVKVMGFTGLL 94 (187)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEECCG----GG-CCSSCHHHHHHHHHHHHTTCTTEEEEEESSCH
T ss_pred cEEEEEEEeCCcCcHHHHHHHHHHHHHC--CcEEEEEecCC----cc-CCCCCHHHHHHHHHHHhccCCcEEEEechhhH
Confidence 6789999999999999999999999997 89999999875 24 589999999999997 6899998774334568
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhc--C-eEEEeccc---CCCChHHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSI--G-KFKETKRT---DGISTSDLIMRIVK 158 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~--G-~~~~~~rT---~giSTS~II~RI~~ 158 (287)
.+++++++++++++|.+...++.. +.......+.. + ..+++..+ ..||||.|++++..
T Consensus 95 ~d~l~~l~~~~iv~G~r~~~Df~~-E~~la~~nr~l~~~ietv~l~~~~~~~~ISST~IRe~~~~ 158 (187)
T 3k9w_A 95 KDFVRANDARVIVRGLRAVSDFEY-EFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQL 158 (187)
T ss_dssp HHHHHHTTCSEEEEECCTTSCHHH-HHHHHHHHHHHCTTCEEEEECCCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECCCcccccch-HHHHHHHHHHhCCCCcEEEEecccccccccHHHHHHHHHc
Confidence 899999999999999765444311 00111112233 2 44555544 48999999877653
No 10
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.73 E-value=1.3e-17 Score=143.32 Aligned_cols=126 Identities=20% Similarity=0.192 Sum_probs=93.6
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCCcccccCCCCCchH
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWVDEVIPDAPWVVTQ 100 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VDeVvi~~p~~~t~ 100 (287)
.+++++|+|||+|.||++++++|+++| |.|+|++++++ .| +|++|.++|++|++ +|+.++.|.+...-+.+.
T Consensus 13 ~i~i~~GsFdP~H~GHl~l~~~A~~~~--D~viv~v~~~~----~k-k~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~tv 85 (173)
T 1vlh_A 13 MKAVYPGSFDPITLGHVDIIKRALSIF--DELVVLVTENP----RK-KCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLV 85 (173)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEECCT----TC-CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHH
T ss_pred eEEEEEEEECcCcHHHHHHHHHHHHHC--CEEEEEEeCCC----CC-CCCCCHHHHHHHHHHHhcCCCCEEEecCcchHH
Confidence 369999999999999999999999997 89999999985 23 48999999999999 799998886632224689
Q ss_pred HHHhhcCCCEEEeCCCcccCCCCCCccHH--HHHHhc---C-eEEEe---cccCCCChHHHHHHHHH
Q 023135 101 DFLDKHQIDYVAHDSLPYADATGSGKDVY--EFVKSI---G-KFKET---KRTDGISTSDLIMRIVK 158 (287)
Q Consensus 101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y--~~lK~~---G-~~~~~---~rT~giSTS~II~RI~~ 158 (287)
++++++++++++.|.....++ +... ..+.+. + ..+.+ +..+++|||.|++++..
T Consensus 86 d~l~~l~~~~~i~gl~~w~d~----~~~~~~~~~~r~~~~~~~~i~l~~~~~~~~iSST~IR~~i~~ 148 (173)
T 1vlh_A 86 DYLKKHGIKVLVRGLRAVTDY----EYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALY 148 (173)
T ss_dssp HHHHHHTCCEEEEEECTTSCH----HHHHHHHHHHHHHSTTCEEEEEECCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCeEEeCCCcccch----hhccchhhcCCCCCCCCcEEEEeCCCCCCceeHHHHHHHHHc
Confidence 999999999999885322221 1111 111221 1 23333 33457999999988764
No 11
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.73 E-value=2.5e-17 Score=143.96 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=98.4
Q ss_pred CCCCCCeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCC
Q 023135 16 PPRDRPVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDA 94 (287)
Q Consensus 16 ~~~~r~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~ 94 (287)
|-...|++++++|+|||+|.||++++++|+++| |+|||+|+.++ .| +|.+|.++|++|++. ++..+.|.+..
T Consensus 16 ~~~~~mki~i~~GsFDPiH~GHl~ii~~A~~~~--D~Viv~v~~np----~K-~~~~s~eeR~~mv~~a~~~~~~v~V~~ 88 (177)
T 3nbk_A 16 PRGSHMTGAVCPGSFDPVTLGHVDIFERAAAQF--DEVVVAILVNP----AK-TGMFDLDERIAMVKESTTHLPNLRVQV 88 (177)
T ss_dssp ----CCCEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECCCT----TS-CCSSCHHHHHHHHHHHCTTCTTEEEEE
T ss_pred cCCCCCEEEEEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CC-CCCCCHHHHHHHHHHHhCCCCCEEEEe
Confidence 345557789999999999999999999999997 89999999886 34 589999999999995 78888887755
Q ss_pred CCCchHHHHhhcCCCEEEeCCCcccCCCCCCcc---HHHHHHhcCeEEEe---cccCCCChHHHHHHHH
Q 023135 95 PWVVTQDFLDKHQIDYVAHDSLPYADATGSGKD---VYEFVKSIGKFKET---KRTDGISTSDLIMRIV 157 (287)
Q Consensus 95 p~~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d---~y~~lK~~G~~~~~---~rT~giSTS~II~RI~ 157 (287)
..+++.++++++++++++.|.....++.. .-+ ....+ ..-..+++ +....||||.|++.+.
T Consensus 89 ~e~l~vd~~~~~~a~~ivrGlr~~~Dfey-e~~~a~~nr~l-~~ietvfl~~~~~~~~ISST~IRe~~~ 155 (177)
T 3nbk_A 89 GHGLVVDFVRSCGMTAIVKGLRTGTDFEY-ELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAM 155 (177)
T ss_dssp CCSCHHHHHHHTTCCEEEEEECTTCCHHH-HHHHHHHHHHH-HCCEEEEEECCGGGSSCCHHHHHHHHH
T ss_pred cCchHHHHHHHcCCCEEEECCCchhHHHH-HHHHHHHHHhc-CCCceEEEeCCCcccccchHHHHHHHH
Confidence 55789999999999999999765554410 000 00122 11133443 3456899999977653
No 12
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.73 E-value=2.1e-17 Score=142.72 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=93.1
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCch
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPWVVT 99 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~~~t 99 (287)
+++++++|+|||+|.||++++++|+++| |.|+|++++++ .| +|++|.++|+++++. ++.++.|.+....+.+
T Consensus 3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~--d~viv~v~~~p----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 75 (168)
T 3f3m_A 3 HTIAVIPGSFDPITYGHLDIIERSTDRF--DEIHVCVLKNS----KK-EGTFSLEERMDLIEQSVKHLPNVKVHQFSGLL 75 (168)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGS--SEEEEEECC----------CCSCHHHHHHHHHHHTTTCTTEEEEECCSCH
T ss_pred ceEEEEEEEcCcCCHHHHHHHHHHHHhC--CEEEEEEcCCC----CC-CCCCCHHHHHHhHHHHhcCCCCEEEEEcCCCH
Confidence 4589999999999999999999999997 89999999876 34 689999999999995 6778877664333578
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCc-cHHHHHHhc--C-eEEEeccc---CCCChHHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGK-DVYEFVKSI--G-KFKETKRT---DGISTSDLIMRIVK 158 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~-d~y~~lK~~--G-~~~~~~rT---~giSTS~II~RI~~ 158 (287)
.++++++++++++.|.+...++. .+ ......+.. + ..+.+..+ ..||||.|++++..
T Consensus 76 vd~~~~l~~~~~I~G~d~~~d~~--~e~~~a~~~r~l~~~~e~v~l~~~p~~~~ISST~IRe~~~~ 139 (168)
T 3f3m_A 76 VDYCEQVGAKTIIRGLRAVSDFE--YELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAY 139 (168)
T ss_dssp HHHHHHHTCCEEEEEECTTCCHH--HHHHHHHHHHHHCTTSEEEEEECCTTTTTCCHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEcCCchhhhh--HHHHHhHHhHhhCCCCcEEEEeCCcccccccHHHHHHHHHc
Confidence 99999999999999977655441 11 111111222 1 23333333 34999999887754
No 13
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.72 E-value=1.2e-17 Score=144.69 Aligned_cols=129 Identities=15% Similarity=0.095 Sum_probs=92.3
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCCccccc-CCCCCc
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWVDEVIP-DAPWVV 98 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VDeVvi-~~p~~~ 98 (287)
|++++++|+|||+|.||+.++++|+++| |.|+||+++++ .| +|++|.++|+++++ +++.++.|.+ ...-+.
T Consensus 2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~--D~viv~v~~~~----~K-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~e~~ 74 (171)
T 3nd5_A 2 RKIALFPGSFDPMTNGHLNLIERSAKLF--DEVIIGVFINT----SK-QTLFTPEEKKYLIEEATKEMPNVRVIMQETQL 74 (171)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTC--SEEEEEEEC-----------CCCHHHHHHHHHHHHTTCTTEEEEEECSSC
T ss_pred CeEEEEEEEccccCHHHHHHHHHHHHHC--CCeEEEEecCC----CC-CCCCCHHHHHHHHHHHHccCCCEEEeeCCCCc
Confidence 4589999999999999999999999997 89999998875 34 48999999999999 4788998876 433367
Q ss_pred hHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHH-Hhc--C-eEEEe---cccCCCChHHHHHHHHH
Q 023135 99 TQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFV-KSI--G-KFKET---KRTDGISTSDLIMRIVK 158 (287)
Q Consensus 99 t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~l-K~~--G-~~~~~---~rT~giSTS~II~RI~~ 158 (287)
+.+++++++++++++|.+...++. .+-....+ +.. + ..+.+ +....||||.|++++..
T Consensus 75 tvd~~~~l~~~~~i~G~~~~~d~~--~e~~la~~nr~l~~~~etv~l~~~~~~~~ISST~IRe~~~~ 139 (171)
T 3nd5_A 75 TVESAKSLGANFLIRGIRNVKDYE--YEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRF 139 (171)
T ss_dssp HHHHHHHHTCCEEEEEECSHHHHH--HHHHHHHHHHHHCTTSEEEEEECCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEECCCchhhhH--HHHHHHHHhhhhcCCccEEEEeCCccccccchHHHHHHHHc
Confidence 899999999999999975544331 01011111 111 2 22333 34458999999887754
No 14
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.66 E-value=4.2e-16 Score=129.61 Aligned_cols=126 Identities=15% Similarity=0.123 Sum_probs=92.3
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCCCchH
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPWVVTQ 100 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~~~t~ 100 (287)
+++++.|+|||+|.||+.++++|++.+ +.++|+++.++ .| ++++|.++|++|++. +..+|.+++...-..+.
T Consensus 2 ~i~i~~GsFDpvH~GH~~l~~~a~~~~--d~v~v~~~~~p----~k-~~~~~~~~R~~ml~~a~~~~~~v~v~~~~~~~~ 74 (158)
T 1qjc_A 2 KRAIYPGTFDPITNGHIDIVTRATQMF--DHVILAIAASP----SK-KPMFTLEERVALAQQATAHLGNVEVVGFSDLMA 74 (158)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHTTS--SEEEEEEESCC----SS-CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCHH
T ss_pred CEEEEEecCCCCCHHHHHHHHHHHHhC--CEEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhcCCCeEEcccchHHH
Confidence 479999999999999999999999997 78999999886 24 578999999999995 88999886521113567
Q ss_pred HHHhhcCCCEEEeCCCcccCCCCCCccHHH--HH-Hhc--C--eEEEeccc--CCCChHHHHHHHHH
Q 023135 101 DFLDKHQIDYVAHDSLPYADATGSGKDVYE--FV-KSI--G--KFKETKRT--DGISTSDLIMRIVK 158 (287)
Q Consensus 101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~--~l-K~~--G--~~~~~~rT--~giSTS~II~RI~~ 158 (287)
++++++++++++.|.+...++ +.... .+ +.. + .+..++.. ..||||.|+++|..
T Consensus 75 ~~l~~l~~~~~v~G~d~~~~~----~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~iSST~IR~~i~~ 137 (158)
T 1qjc_A 75 NFARNQHATVLIRGLRAVADF----EYEMQLAHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARH 137 (158)
T ss_dssp HHHHHTTCCEEEEECCTTCCH----HHHHHHHHHHHHHCTTSEEEEECCCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEeccchhhh----HHHHHHHHhCccCCCCCCEEEEECCCCCCccCHHHHHHHHHc
Confidence 899999999999997643332 11111 11 222 2 23333322 46999999888754
No 15
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.60 E-value=4.3e-15 Score=125.62 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=91.6
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCcccccCCCC-Cch
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIPDAPW-VVT 99 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi~~p~-~~t 99 (287)
+++++.|+|||+|.||+.++++|++.+ +.|+|+++.++ .| ++++|.++|+++++. +..+|.+.+. |+ ..+
T Consensus 3 ~i~i~~GsFDpvH~GH~~li~~a~~~~--d~v~v~~~~~p----~k-~~l~~~~~R~~ml~~a~~~~~~v~v~-~~e~~~ 74 (169)
T 1o6b_A 3 SIAVCPGSFDPVTYGHLDIIKRGAHIF--EQVYVCVLNNS----SK-KPLFSVEERCELLREVTKDIPNITVE-TSQGLL 74 (169)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEECCCC----SS-CCSSCHHHHHHHHHHHHTTCTTEEEE-ECSSCH
T ss_pred cEEEEEEeeCCCCHHHHHHHHHHHHhC--CEEEEEECCCC----cc-CCCCCHHHHHHHHHHHHhcCCCEEEc-ccchHH
Confidence 479999999999999999999999997 78999888664 24 578999999999995 6888877652 22 357
Q ss_pred HHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHh-c--C-eEEEeccc---CCCChHHHHHHHHH
Q 023135 100 QDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKS-I--G-KFKETKRT---DGISTSDLIMRIVK 158 (287)
Q Consensus 100 ~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~-~--G-~~~~~~rT---~giSTS~II~RI~~ 158 (287)
.+.++++++++++.|.+...++.. .--...+.+ . | ..+.+... ..||||.|++.|..
T Consensus 75 ~~~l~~l~~~~~i~G~d~~~~~~~--~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~ 138 (169)
T 1o6b_A 75 IDYARRKNAKAILRGLRAVSDFEY--EMQGTSVNRVLDESIETFFMMANNQYSFLSSSIVKEVARY 138 (169)
T ss_dssp HHHHHHTTCSEEEEEECSGGGHHH--HHHHHHHHHHHCTTSEEEEEECCSTTTTCCHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEcCccccchHH--HHHHHHHhccccCCCCEEEEECCCCCCcCcHHHHHHHHHc
Confidence 788999999999999876543211 001112222 1 3 33333322 36999999888754
No 16
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.57 E-value=1.8e-14 Score=120.11 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=87.4
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHHh-ccCCcccccCCCC-CchH
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLRH-CRWVDEVIPDAPW-VVTQ 100 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~~-~k~VDeVvi~~p~-~~t~ 100 (287)
+++.|+|||+|.||+.++++|++.+ +.++|+++.++ .|+ .+++|.++|+++++. +..+|.+.+. ++ +.+.
T Consensus 3 ~v~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~~~~~p----~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~-~~e~~~~ 75 (160)
T 1od6_A 3 VVYPGSFDPLTNGHLDVIQRASRLF--EKVTVAVLENP----SKRGQYLFSAEERLAIIREATAHLANVEAA-TFSGLLV 75 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHS--SEEEEEEECC---------CCSSCHHHHHHHHHHHTTTCTTEEEE-EECSCHH
T ss_pred EEEEeeeCCCCHHHHHHHHHHHHHC--CEEEEEEcCCC----CCCCCCCCCHHHHHHHHHHHhcCCCCEEEE-ecCchHH
Confidence 8999999999999999999999997 78999998765 232 468999999999994 6888877652 22 3577
Q ss_pred HHHhhcCCCEEEeCCCcccCCCCCCccHHH--H-HHhc--C-eEEEe-cc--cCCCChHHHHHHHHH
Q 023135 101 DFLDKHQIDYVAHDSLPYADATGSGKDVYE--F-VKSI--G-KFKET-KR--TDGISTSDLIMRIVK 158 (287)
Q Consensus 101 efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~--~-lK~~--G-~~~~~-~r--T~giSTS~II~RI~~ 158 (287)
++++++++++++.|.+...++ +.... . .+.. + ..+.+ .. ...||||.|+++|..
T Consensus 76 ~~l~~l~~~~~v~G~d~~~~~----~~~~~~~~~~r~~~~~~~~i~~~~~~~~~~ISST~IR~~l~~ 138 (160)
T 1od6_A 76 DFVRRVGAQAIVKGLRAVSDY----EYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARY 138 (160)
T ss_dssp HHHHHTTCSEEEEEECTTSCH----HHHHHHHHHHHHHTTTCEEEEEECCGGGTTCCHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEeCCcccch----HHHHHHHHhCcCCCCCCCEEEEeCCCCCCcccHHHHHHHHHc
Confidence 899999999999997632221 11111 1 2222 2 22332 22 247999999888754
No 17
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.55 E-value=7.3e-16 Score=130.38 Aligned_cols=127 Identities=18% Similarity=0.263 Sum_probs=90.3
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-c-cC----CcccccCCCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-C-RW----VDEVIPDAPW 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~-k~----VDeVvi~~p~ 96 (287)
+|+++|+|||+|.||+.++++|++++ -|.|+|||++|+..++ +.+|++|.++|++|++. + +. +.-+-+.+++
T Consensus 2 ~~i~gGtFDPiH~GHl~l~~~a~~~~-~d~viv~v~~~~~~~k-~~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~D~~ 79 (148)
T 3do8_A 2 KVALGGTFEPLHEGHKKLIDVAIKLG-GRDITIGVTSDRMARA-RIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPY 79 (148)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHH-TTCEEEEEECHHHHHH-HSCCCSCHHHHHHHHHHHHHHHHSSCCEEEEECSTT
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhC-CCEEEEEECCCccccc-cCCCCCCHHHHHHHHHHHHhcccCCcEEEEeecCCC
Confidence 58999999999999999999999983 3799999999986533 24689999999999985 4 32 2222246777
Q ss_pred CchHHHHhhcCCCEEEeCCCcccCCCCCCccHHHHHHhcCe----EEEecc-----cCCCChHHHHHHHHHh
Q 023135 97 VVTQDFLDKHQIDYVAHDSLPYADATGSGKDVYEFVKSIGK----FKETKR-----TDGISTSDLIMRIVKD 159 (287)
Q Consensus 97 ~~t~efl~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G~----~~~~~r-----T~giSTS~II~RI~~~ 159 (287)
+.+. .-.+|+++.+...+.+ ...+-+..++.|- +..++- ..-+|||.|+++++..
T Consensus 80 g~~~----~~~~d~ivvs~Et~~~----~~~l~~~~~~~G~~~l~V~~v~~~~~~~~~~iSST~IR~~~id~ 143 (148)
T 3do8_A 80 GKTL----DVDFEYLVVSPETYEM----ALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEIDR 143 (148)
T ss_dssp TTTT----TSCCSEEEECTTTHHH----HHHHHHHHHHHTCCCCEEEEEECCC-------CCCCCCCSCCC-
T ss_pred CCCC----CCCCCEEEEChhhccc----HHHHHHHHHHcCCCeeEEEEeccEEcCCCCEEEHHHHHHHHHhh
Confidence 7664 3688999999876542 2344455566775 444442 2349999998776553
No 18
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.52 E-value=1.8e-14 Score=123.23 Aligned_cols=131 Identities=15% Similarity=0.000 Sum_probs=93.6
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHHh-ccCCcccccCCCC---
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLRH-CRWVDEVIPDAPW--- 96 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~~-~k~VDeVvi~~p~--- 96 (287)
+++++.|+|||+|.||+.++++|++.+..+.+++++++++. .|+ .+++|.++|+++++. ++.+|.+.+. +|
T Consensus 3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~~~~~~~~v~v~-~~e~~ 78 (189)
T 2qtr_A 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPP---HKQGRNITSVESRLQMLELATEAEEHFSIC-LEELS 78 (189)
T ss_dssp EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCT---TCTTSCCCCHHHHHHHHHHHHTTCTTEEEC-CTGGG
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CccCCCCCCHHHHHHHHHHHhCCCCCEEEe-hHHhc
Confidence 57899999999999999999999998766899999997763 243 468999999999994 7788877652 33
Q ss_pred ----CchHHHHhhcCCCE------EEeCCCcccCCCCCCccHHHHHHhcCeEEEeccc-----------------CCCCh
Q 023135 97 ----VVTQDFLDKHQIDY------VAHDSLPYADATGSGKDVYEFVKSIGKFKETKRT-----------------DGIST 149 (287)
Q Consensus 97 ----~~t~efl~~~~iD~------Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT-----------------~giST 149 (287)
..+.+.++.++..+ ++.|.|...+...-+ -++.+.+.+.+...+|. ..|||
T Consensus 79 ~~~~~~~~~~l~~l~~~~p~~~~~~v~G~D~~~~~~~w~--~~~~l~~~~~~~v~~r~~~~~~~~~~v~~~~~~~~~iSS 156 (189)
T 2qtr_A 79 RKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWY--NIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSS 156 (189)
T ss_dssp SCSCCCHHHHHHHHHHHCTTCEEEEEEEHHHHHHGGGST--THHHHTTTCEEEEECCTTCCCCCSSCCEEECCCCCCCCH
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEEEehhhhhhhhccC--CHHHHHHhCCEEEEECCCCCccCCceEEEEcCCCCccCH
Confidence 34667777776555 889986543221101 14556666665555442 36999
Q ss_pred HHHHHHHHH
Q 023135 150 SDLIMRIVK 158 (287)
Q Consensus 150 S~II~RI~~ 158 (287)
|.|+++|.+
T Consensus 157 T~IR~~l~~ 165 (189)
T 2qtr_A 157 SLLRERYKE 165 (189)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999887754
No 19
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.52 E-value=1.2e-13 Score=119.45 Aligned_cols=131 Identities=13% Similarity=-0.031 Sum_probs=86.2
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHH-hccCCcccccCCCC---
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLR-HCRWVDEVIPDAPW--- 96 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~-~~k~VDeVvi~~p~--- 96 (287)
+++++.|+|||+|.||+.++++|++.+..+.++|+++.+.. .|+ .++++.++|+++++ +++.++.+.+. +|
T Consensus 8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~ml~~a~~~~~~v~v~-~~e~~ 83 (194)
T 1kam_A 8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPP---HKQNEDYTDSFHRVEMLKLAIQSNPSFKLE-LVEME 83 (194)
T ss_dssp EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHTTCTTEEEC-CGGGS
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCC---CcCCcCCCCHHHHHHHHHHHHcCCCCeEEe-HHHhc
Confidence 57899999999999999999999998855889999987763 343 56899999999999 58888877652 22
Q ss_pred ----CchHHHHhhcC---CC---EEEeCCCcccCCCCCCccHHHHHHhcCeEEEeccc-----------------CCCCh
Q 023135 97 ----VVTQDFLDKHQ---ID---YVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRT-----------------DGIST 149 (287)
Q Consensus 97 ----~~t~efl~~~~---iD---~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT-----------------~giST 149 (287)
..+.+.++.++ |+ +++.|.|...+.. ... -|+.+-+...++..+|. ..|||
T Consensus 84 ~~~~~~t~~~l~~l~~~~p~~~~~~v~G~D~~~~~~-~W~-~~e~i~~~~~~~v~~R~g~~~~l~~~i~~~~~~~~~ISS 161 (194)
T 1kam_A 84 REGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLP-KWY-KLDELLNLIQFIGVKRPGFHVETPYPLLFADVPEFEVSS 161 (194)
T ss_dssp TTCCCSHHHHHHHHHHHSTTSEEEEEEETTTTTTCC-CCH-HHHHHHHHSEEEEEECSSCCCCCSSCCEEEECCCBCCCH
T ss_pred CCCCCChHHHHHHHHHHCCCCcEEEEEecchhhhhc-ccc-CHHHHHHhCcEEEEECCCcchhcCCCEEEeCCCCCCcCH
Confidence 24556666654 44 9999998655421 011 12222222222323221 27999
Q ss_pred HHHHHHHHH
Q 023135 150 SDLIMRIVK 158 (287)
Q Consensus 150 S~II~RI~~ 158 (287)
|.|+++|..
T Consensus 162 T~IR~~i~~ 170 (194)
T 1kam_A 162 TMIRERFKS 170 (194)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999888754
No 20
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.46 E-value=8.5e-13 Score=119.23 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=74.6
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCCcccccCC-----
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWVDEVIPDA----- 94 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VDeVvi~~----- 94 (287)
+++++++|+|||+|.||+.++++|++.|+-+.|+|+++.++. .|+.++++.++|++|++ ++..++.|.+..
T Consensus 23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p---~K~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~ 99 (242)
T 1yum_A 23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPP---HRETPQVSAAQRLAMVERAVAGVERLTVDPRELQR 99 (242)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCG---GGSCTTCCHHHHHHHHHHHHTTCTTEEECCGGGGS
T ss_pred ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCC---CCCCCCCCHHHHHHHHHHHhcCCCeEEEeeeeecC
Confidence 557899999999999999999999998755899999999862 24457899999999999 578888776632
Q ss_pred -CCCchHHHHhhc----CCC---EEEeCCC
Q 023135 95 -PWVVTQDFLDKH----QID---YVAHDSL 116 (287)
Q Consensus 95 -p~~~t~efl~~~----~iD---~Vv~G~d 116 (287)
.+..|.+.++.+ +|+ +++.|.|
T Consensus 100 ~~~sytvdtl~~l~~~~~p~~~~~fI~G~D 129 (242)
T 1yum_A 100 DKPSYTIDTLESVRAELAADDQLFMLIGWD 129 (242)
T ss_dssp SSSCCHHHHHHHHHHHSCTTCEEEEEEEHH
T ss_pred CCCCCHHHHHHHHHHHhCCCCcEEEEEehh
Confidence 224577877665 688 7888874
No 21
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.43 E-value=2e-13 Score=118.45 Aligned_cols=129 Identities=9% Similarity=0.034 Sum_probs=84.4
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccC-----C--ccccc-
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRW-----V--DEVIP- 92 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~-----V--DeVvi- 92 (287)
++++++|+|||+|.||+.+++ |.+.| |.|+|+++++. ..| ++..+.++|++|++. ++. | +.+-.
T Consensus 3 ~igi~gGsFdPih~GHl~i~~-a~~~~--d~v~~~p~~~~---~~k-~~~~~~~~R~~m~~~a~~~~~~~~~~v~~~E~~ 75 (177)
T 3h05_A 3 KIAIFGSAFNPPSLGHKSVIE-SLSHF--DLVLLEPSIAH---AWG-KNMLDYPIRCKLVDAFIKDMGLSNVQRSDLEQA 75 (177)
T ss_dssp EEEEEEECCSSCCHHHHHHHT-TCTTS--SEEEEEECC-----------CCCHHHHHHHHHHHHHHHCCTTEEECCHHHH
T ss_pred EEEEEEeccchhhHHHHHHHH-HHHHC--CEEEEEECCCC---CCC-CCCCCHHHHHHHHHHHHhcCCCCcEEEEehhhh
Confidence 578999999999999999998 87777 89999999862 123 578999999999985 432 2 22211
Q ss_pred ----C-CCCCc-hHHHHhhcCCC---EEEeCCCcccCCCCCCccHHHHHHhcCeEEEecccCCCChHHHHHHHHHh
Q 023135 93 ----D-APWVV-TQDFLDKHQID---YVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRTDGISTSDLIMRIVKD 159 (287)
Q Consensus 93 ----~-~p~~~-t~efl~~~~iD---~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT~giSTS~II~RI~~~ 159 (287)
+ ..|++ |...+++.-|+ +++.|.|...+.. ...+ ++.+-+.-.++.++|+..||+|.|+++|.+.
T Consensus 76 l~~~~~~syT~dTl~~l~~~~p~~~~~~iiG~D~l~~l~-~W~~-~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g 149 (177)
T 3h05_A 76 LYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFA-KFYK-AEEITERWTVMACPEKVKIRSTDIRNALIEG 149 (177)
T ss_dssp HC----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGG-GSTT-HHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred cccCCCCcchHHHHHHHHHHhcCCCeEEEEecchhhhcc-cchh-HHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence 1 12322 34445444454 5778887554311 0112 4445445577788999999999999988754
No 22
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.42 E-value=1.9e-12 Score=113.65 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=71.6
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCCcccccCC------CC
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWVDEVIPDA------PW 96 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VDeVvi~~------p~ 96 (287)
+++.|+|||+|.||+.++++|++.|.-+.|+|+++.++. .|..+.++.++|+++++ +++.++.|.+.. ..
T Consensus 6 ~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~~~~~ 82 (213)
T 1k4m_A 6 ALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP---HRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAP 82 (213)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCT---TSCCCSSCHHHHHHHHHHHHTTCTTEEECCHHHHCSSC
T ss_pred EEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCCCCCCCHHHHHHHHHHHhccCCCEEEeHHHhcCCCC
Confidence 899999999999999999999998755789998887753 24446899999999999 678888877631 11
Q ss_pred CchHHHHhhc----CCC---EEEeCCC
Q 023135 97 VVTQDFLDKH----QID---YVAHDSL 116 (287)
Q Consensus 97 ~~t~efl~~~----~iD---~Vv~G~d 116 (287)
..|.++++.+ +|+ +++.|.|
T Consensus 83 s~t~~~l~~l~~~~~~~~~~~~i~G~D 109 (213)
T 1k4m_A 83 SYTAQTLKEWRQEQGPDVPLAFIIGQD 109 (213)
T ss_dssp CCHHHHHHHHHHHHCTTSCEEEEEEHH
T ss_pred CcHHHHHHHHHHHhCCCCcEEEEEehh
Confidence 3456777655 899 9999985
No 23
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=99.40 E-value=4.5e-13 Score=124.86 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=91.8
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCE---EEEEEecCc--ccccc-CCCCCCCHHHHHHHHHhccCCcccccC---C
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTY---LLVGCNNDE--DTHKY-KGKTVMTDKERYESLRHCRWVDEVIPD---A 94 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~---LIVGV~sD~--~~~~~-Kgrpv~s~eER~e~V~~~k~VDeVvi~---~ 94 (287)
|++.|+||.+|.||..+|++|++.+ +. ..|+++-|+ .+.+. +.+|++|.++|+++|+++. ++.|++. +
T Consensus 2 vvtiG~FDgvH~GH~~ll~~a~~~a--~~~~~~~vVvtFdphP~~l~~~~~~~l~~~~eR~~ll~~lg-~~~v~~F~~~a 78 (293)
T 1mrz_A 2 VVSIGVFDGVHIGHQKVLRTMKEIA--FFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSRYA-RTVVLDFFRIK 78 (293)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHH--HHHTCCCEEEEESSCGGGGSTTCCCBSSCHHHHHHHHTTTS-CEEEECHHHHT
T ss_pred EEEEeeCccccHHHHHHHHHHHHHH--HHcCCeEEEEEecCCHHHhCCCCCCCCCCHHHHHHHHHhCC-CEEEEEhHHhh
Confidence 6889999999999999999999874 32 224455454 22211 1256999999999999998 5555532 1
Q ss_pred CCCchHHHHhh--cCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecc----cCCCChHHHHHHHHHh
Q 023135 95 PWVVTQDFLDK--HQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKR----TDGISTSDLIMRIVKD 159 (287)
Q Consensus 95 p~~~t~efl~~--~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~r----T~giSTS~II~RI~~~ 159 (287)
. ....+|++. ++++++++|.|+..+....++ .+.+++.| .+..++. +..||||.|++.|.+-
T Consensus 79 ~-ls~~~Fi~~ill~~~~iVvG~Df~fG~~~~g~--~~~L~~~G~~V~~v~~~~~~~~~iSST~IR~~L~~G 147 (293)
T 1mrz_A 79 D-LTPEGFVERYLSGVSAVVVGRDFRFGKNASGN--ASFLRKKGVEVYEIEDVVVQGKRVSSSLIRNLVQEG 147 (293)
T ss_dssp T-CCHHHHHHHHCTTCCEEEEETTCCBSGGGCBC--HHHHHHTTCEEEEECCCEETTEECCHHHHHHHHHTT
T ss_pred c-CCHHHHHHHHhcCCCEEEECCCCCCCCCCCCC--HHHHHhCCCEEEEECCEEeCCccccHhHHHHHHhcC
Confidence 1 224678887 899999999988654322222 45677787 7777774 4579999998887553
No 24
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.36 E-value=1.9e-12 Score=111.44 Aligned_cols=132 Identities=12% Similarity=0.033 Sum_probs=86.3
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC-CCCCCHHHHHHHHH-hccCCcccccCC-----
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG-KTVMTDKERYESLR-HCRWVDEVIPDA----- 94 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg-rpv~s~eER~e~V~-~~k~VDeVvi~~----- 94 (287)
+++++.|+|||+|.||+.++++|++.++.+.+++..+.+.. .|+ .++++.++|+++++ +++..+.|.+..
T Consensus 3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~---~k~~~~~~~~~~R~~m~~~a~~~~~~v~v~~~e~~~ 79 (189)
T 2h29_A 3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSP---LKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKR 79 (189)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCT---TSCCCSSCCCHHHHHHHHHHHHHHTCCEECCHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCC---CCcCCCCCCHHHHHHHHHHHHcCCCCEEEehHHhcC
Confidence 47899999999999999999999998866888877776653 233 57899999999999 466655554421
Q ss_pred -CCCchHHHHh---hcCCC---EEEeCCCcccCCCCCCccHHHHHHhcCeEEEeccc-----------------CCCChH
Q 023135 95 -PWVVTQDFLD---KHQID---YVAHDSLPYADATGSGKDVYEFVKSIGKFKETKRT-----------------DGISTS 150 (287)
Q Consensus 95 -p~~~t~efl~---~~~iD---~Vv~G~d~y~~~~g~~~d~y~~lK~~G~~~~~~rT-----------------~giSTS 150 (287)
....|.+.++ +.-|+ +++.|.|...+.. ...+.-+.++. -.+...+|. ..||||
T Consensus 80 ~~~syt~dtl~~l~~~~p~~~~~~i~G~D~~~~~~-~W~~~~~i~~~-~~~~v~~R~~~~~~~~~~i~~~~~~~~~ISST 157 (189)
T 2h29_A 80 GGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLE-KWYQIEYLKEM-VTFVVVNRDKNSQNVENAMIAIQIPRVDISST 157 (189)
T ss_dssp CSBCCHHHHHHHHHHHSTTEEEEEEEEHHHHTTGG-GSTTHHHHHHH-CEEEEECCSSSCCCCCTTSEEECCCCBCCCHH
T ss_pred CCCCCHHHHHHHHHHHCCCCcEEEEEecchhhhhc-cccCHHHHHhh-CcEEEEECCCCccccCCcEEEEcCCCCccCHH
Confidence 1123555554 44576 8899986543311 00111122322 333344432 469999
Q ss_pred HHHHHHHH
Q 023135 151 DLIMRIVK 158 (287)
Q Consensus 151 ~II~RI~~ 158 (287)
.|++++..
T Consensus 158 ~IR~~i~~ 165 (189)
T 2h29_A 158 MIRQRVSE 165 (189)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99888754
No 25
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.35 E-value=4.6e-12 Score=118.63 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=82.2
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccc----ccc-CCCCCCCHHHHHHHHH-hccCCcc-ccc--
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDT----HKY-KGKTVMTDKERYESLR-HCRWVDE-VIP-- 92 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~----~~~-Kgrpv~s~eER~e~V~-~~k~VDe-Vvi-- 92 (287)
++++++|+|||||.||+.++++|++.| |+|+|+|++++.. ++. +.+..+|.++|++||+ +|+..+. |.+
T Consensus 3 ~~~i~~GtFdP~h~GHl~~~~~a~~~~--d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~~~~~~v~~ 80 (365)
T 1lw7_A 3 KVGVIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQKNQIFIHH 80 (365)
T ss_dssp CEEEEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTTTTTEEEEE
T ss_pred cEEEEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcCCCcEEEEE
Confidence 478999999999999999999999997 8999999998842 121 2233599999999998 5666554 322
Q ss_pred ----CC---C-----CCc-hHHHHh--hcCCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEec--c-cCCCChHHHH
Q 023135 93 ----DA---P-----WVV-TQDFLD--KHQIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETK--R-TDGISTSDLI 153 (287)
Q Consensus 93 ----~~---p-----~~~-t~efl~--~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~--r-T~giSTS~II 153 (287)
.. | |.. ...+++ ..++++++.+..++. -...+..| .+++++ | ...||+|.|+
T Consensus 81 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~e~~~~---------~~~~~~~~~e~v~l~~~~~~~~iSsT~IR 151 (365)
T 1lw7_A 81 LVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDK---------APYEKYLGLEVSLVDPDRTFFNVSATKIR 151 (365)
T ss_dssp EECSSSCCTTSCHHHHHHHHHHHHHHTTCCCSEEECSCGGGH---------HHHHHHTCCEEECCCSSCCSSCCCHHHHH
T ss_pred eccCCCCCCchHHHHHHHHHHHHhhccCCCCcEEEECCCCCH---------HHHHHHcCCceEEeCCcccCCCCCHHHHH
Confidence 11 1 110 112233 357787665532211 12345567 566665 4 3689999997
Q ss_pred HHH
Q 023135 154 MRI 156 (287)
Q Consensus 154 ~RI 156 (287)
+.+
T Consensus 152 e~~ 154 (365)
T 1lw7_A 152 TTP 154 (365)
T ss_dssp HCG
T ss_pred hCh
Confidence 754
No 26
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.33 E-value=1.3e-11 Score=104.68 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=77.7
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEE-ecCccccccCCCCCCCHHHHHHHHHh-ccCCc-cccc--CCCCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGC-NNDEDTHKYKGKTVMTDKERYESLRH-CRWVD-EVIP--DAPWV 97 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV-~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VD-eVvi--~~p~~ 97 (287)
++++.|+|||+|.||+.++++|++.+ +.|+|+| +.++ .+ |..+.+|.++|+++++. ++..+ .+.+ -+.+.
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~-p~--~~~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d~l~ 76 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEV--DEIIIGIGSAQK-SH--TLENPFTAGERILMITQSLKDYDLTYYPIPIKDIE 76 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTC-CS--SSSCCSCHHHHHHHHHHHHTTSSCEEEEEECCCCS
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhC--CeEEEEEcCCCC-CC--CCCCCCCHHHHHHHHHHHHhcCCCceEEEeeCCcc
Confidence 68999999999999999999999996 7899998 4454 22 23356799999999994 66655 3321 11111
Q ss_pred ---chHHHHhhc--CCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccC--CCChHHHHHHHHH
Q 023135 98 ---VTQDFLDKH--QIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTD--GISTSDLIMRIVK 158 (287)
Q Consensus 98 ---~t~efl~~~--~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~--giSTS~II~RI~~ 158 (287)
.-.+++++. ..++++.+.+. ....+...| .++.++..+ .||||.|++++..
T Consensus 77 ~~~~w~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~~~~ 135 (168)
T 1f9a_A 77 FNSIWVSYVESLTPPFDIVYSGNPL----------VRVLFEERGYEVKRPEMFNRKEYSGTEIRRRMLN 135 (168)
T ss_dssp CGGGHHHHHHHHSCCCSEEECCCHH----------HHHHHHHTTCEEECCCCCSTTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHhccCCCEEEECcHH----------HHHhhhhcCcEEEeCCccccCcccHHHHHHHHHc
Confidence 112333332 44666544211 112233445 455556544 6999999888753
No 27
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.30 E-value=2.4e-11 Score=104.25 Aligned_cols=123 Identities=15% Similarity=0.085 Sum_probs=81.4
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCC----ccccc--CC
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWV----DEVIP--DA 94 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~V----DeVvi--~~ 94 (287)
+++++.|+|||+|.||+.++++|++.+ +.++|+|.+....+ |..+.+|.++|+++++. +... +.+.+ .+
T Consensus 4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~--d~v~v~v~~~~~p~--~~~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~d 79 (181)
T 1ej2_A 4 MRGLLVGRMQPFHRGHLQVIKSILEEV--DELIICIGSAQLSH--SIRDPFTAGERVMMLTKALSENGIPASRYYIIPVQ 79 (181)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHTTTC--SEEEEEECSTTCCS--SSSSCSCHHHHHHHHHHHHHHTTCCGGGEEEEECC
T ss_pred eEEEEEEEcCCcCHHHHHHHHHHHHhC--CeeEEEECCCCCCc--CCCCCCCHHHHHHHHHHHHhhCCCCCCcEEEEecC
Confidence 379999999999999999999999995 78999984443222 23457899999999995 4433 34432 12
Q ss_pred CCCc---hHHHHhhc--CCCEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccC--CCChHHHHHHHHH
Q 023135 95 PWVV---TQDFLDKH--QIDYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTD--GISTSDLIMRIVK 158 (287)
Q Consensus 95 p~~~---t~efl~~~--~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~--giSTS~II~RI~~ 158 (287)
.+.. ..+++++. .+++++.|.+. .-+.++..| .++.++..+ .||||.|++++..
T Consensus 80 ~~~~~~~w~~~~~~l~~~~~~~v~gr~~----------~~~~~~~~~i~~~~~~~~~~~~ISST~IR~~l~~ 141 (181)
T 1ej2_A 80 DIECNALWVGHIKMLTPPFDRVYSGNPL----------VQRLFSEDGYEVTAPPLFYRDRYSGTEVRRRMLD 141 (181)
T ss_dssp CCSCHHHHHHHHHHHSCCCSEEECCCHH----------HHHHHHHTTCCEECCCCSSTTTSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHCCCCCEEEECCHH----------HHHHHHhCCeEEEecCCCccCcCcHHHHHHHHHc
Confidence 1111 23444443 56777766422 122344556 566666644 4999999887753
No 28
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=99.21 E-value=4.6e-11 Score=113.28 Aligned_cols=143 Identities=12% Similarity=0.091 Sum_probs=95.6
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCC-CEEEEEEecCccccc----cC-CCCCCCHHHHHHHHHhccCCcccccCCCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPN-TYLLVGCNNDEDTHK----YK-GKTVMTDKERYESLRHCRWVDEVIPDAPW 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~g-d~LIVGV~sD~~~~~----~K-grpv~s~eER~e~V~~~k~VDeVvi~~p~ 96 (287)
.|++-|+||.+|.||..+|++|++.+.. ...+|+|+-|+.... .+ .++++|.++|+++|+.+. ||.|++. |+
T Consensus 17 ~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~g-VD~v~v~-~F 94 (338)
T 2x0k_A 17 SAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFG-IDGVLVI-DF 94 (338)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTT-CSEEEEE-CT
T ss_pred eEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhcC-CCEEEEc-cc
Confidence 6899999999999999999999986310 124677887773221 11 145999999999999985 9998751 22
Q ss_pred -----Cc-hHHHHhh-----cCCCEEEeCCCcccCCCCCCc--cHHHHHHhcC-eEEEecc----cCCCChHHHHHHHHH
Q 023135 97 -----VV-TQDFLDK-----HQIDYVAHDSLPYADATGSGK--DVYEFVKSIG-KFKETKR----TDGISTSDLIMRIVK 158 (287)
Q Consensus 97 -----~~-t~efl~~-----~~iD~Vv~G~d~y~~~~g~~~--d~y~~lK~~G-~~~~~~r----T~giSTS~II~RI~~ 158 (287)
.+ ..+|++. +++++++.|.|+..+....++ .+-+..++ | .+..++. ...||||.|++.|.+
T Consensus 95 ~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~FG~~r~g~~~~L~~~~~~-g~~V~~v~~~~~~~~~ISST~IR~~L~~ 173 (338)
T 2x0k_A 95 TRELSGTSPEKYVEFLLEDTLHASHVVVGANFTFGENAAGTADSLRQICQS-RLTVDVIDLLDDEGVRISSTTVREFLSE 173 (338)
T ss_dssp TTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEESGGGCEEHHHHHHHTTT-TSEEEEECCCEETTEECSHHHHHHHHHT
T ss_pred cHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCCCCCCCCCHHHHHHHhcC-CeEEEEECcEecCCcccccchHHHHHhc
Confidence 12 3567765 589999999988654322222 22233334 6 6666665 456999999887755
Q ss_pred hhHHHHHHHh
Q 023135 159 DYNQYVTRNL 168 (287)
Q Consensus 159 ~yd~y~~Rnl 168 (287)
--=.-..+-|
T Consensus 174 G~i~~a~~lL 183 (338)
T 2x0k_A 174 GDVARANWAL 183 (338)
T ss_dssp TCHHHHHHHH
T ss_pred CcHHHHHHhc
Confidence 4323333433
No 29
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.18 E-value=4e-11 Score=109.71 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=81.6
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cCC--cccc--cC-C
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RWV--DEVI--PD-A 94 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~V--DeVv--i~-~ 94 (287)
|+++++.|+|||+|.||+.++++|++.+ +.++|+|+++..-++ | +..+|.++|++|++.+ ... +.++ +. +
T Consensus 7 ~~~~i~~G~FdP~H~GH~~li~~a~~~~--d~v~v~v~~~~~p~~-~-~~~~~~~~R~~m~~~~~~~~~~~~~~~i~~~d 82 (341)
T 2qjo_A 7 YQYGIYIGRFQPFHLGHLRTLNLALEKA--EQVIIILGSHRVAAD-T-RNPWRSPERMAMIEACLSPQILKRVHFLTVRD 82 (341)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHE--EEEEEEEEEETCCCC-S-SSCSCHHHHHHHHHTTSCHHHHTTEEEEEEEC
T ss_pred eeEEEEEEEeCCCCHHHHHHHHHHHHhC--CeEEEEECCcccCCC-C-CCCCCHHHHHHHHHHHhhhccCCeEEEEECCC
Confidence 4689999999999999999999999997 789988888754332 2 3358999999999964 332 2232 21 1
Q ss_pred C------CCc-hHHHHhhcC---CCEEEeCCCcccCCCCCCccHHHHHHhc-C-eEEEecccCCCChHHHHHHHHH
Q 023135 95 P------WVV-TQDFLDKHQ---IDYVAHDSLPYADATGSGKDVYEFVKSI-G-KFKETKRTDGISTSDLIMRIVK 158 (287)
Q Consensus 95 p------~~~-t~efl~~~~---iD~Vv~G~d~y~~~~g~~~d~y~~lK~~-G-~~~~~~rT~giSTS~II~RI~~ 158 (287)
. |.- ..+++..+. .++++.|.+... ... ..+.. | .++.++....||||.|++.|.+
T Consensus 83 ~~~~~~~w~~~~~~l~~~l~r~~~~~~~~g~~~~~------~~~--~~~~~~~~~~~~~~~~~~iSST~IR~~l~~ 150 (341)
T 2qjo_A 83 WLYSDNLWLAAVQQQVLKITGGSNSVVVLGHRKDA------SSY--YLNLFPQWDYLETGHYPDFSSTAIRGAYFE 150 (341)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCSCEEEEECCCSG------GGG--GGGSCTTSEEEECCCCTTCCHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHhHHhcCCCceEEEEcCCCCC------ChH--HHHhccccceeecccCCCCCcHHHHHHHHc
Confidence 1 111 112333332 677777754311 111 12223 4 5566676678999999888753
No 30
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=99.08 E-value=2.4e-10 Score=107.39 Aligned_cols=145 Identities=16% Similarity=0.110 Sum_probs=96.5
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCC-EEEEEEecCccccc-------cCCCCCCCHHHHHHHHHhccCCcccccCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNT-YLLVGCNNDEDTHK-------YKGKTVMTDKERYESLRHCRWVDEVIPDA 94 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd-~LIVGV~sD~~~~~-------~Kgrpv~s~eER~e~V~~~k~VDeVvi~~ 94 (287)
.|++-|+||-+|.||..+|++|++.+... .-.|.++=|+.-.. ...++++|.+||+++++++. ||.+++ .
T Consensus 22 ~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lG-VD~v~~-~ 99 (308)
T 3op1_A 22 SVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREG-VEELYL-L 99 (308)
T ss_dssp EEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHT-CCEEEE-E
T ss_pred eEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcC-CCEEEE-e
Confidence 69999999999999999999999874211 12344555542211 11236999999999999996 999975 2
Q ss_pred CCC-----c-hHHHH----hhcCCCEEEeCCCcccCCCCCCccHHHHHHhcC--eEEEecc----cCCCChHHHHHHHHH
Q 023135 95 PWV-----V-TQDFL----DKHQIDYVAHDSLPYADATGSGKDVYEFVKSIG--KFKETKR----TDGISTSDLIMRIVK 158 (287)
Q Consensus 95 p~~-----~-t~efl----~~~~iD~Vv~G~d~y~~~~g~~~d~y~~lK~~G--~~~~~~r----T~giSTS~II~RI~~ 158 (287)
|+. + ..+|+ .+++++.++.|.|...+. +.++ .+.|+++| .+..++. ...||||.|++-|.+
T Consensus 100 ~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrFG~-r~G~--~~~L~~~~~~~V~~v~~~~~~~~~ISST~IR~~L~~ 176 (308)
T 3op1_A 100 DFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTFGS-DKKT--AEDLKNYFDGEVIIVPPVEDEKGKISSTRIRQAILD 176 (308)
T ss_dssp CCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCBTT-TTBC--STTHHHHCSSEEEEECCCBCSSCBCCHHHHHHHHHH
T ss_pred cCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCCCC-cCCC--HHHHHHhCCCCEEEeCCEecCCceEeHHHHHHHHHc
Confidence 321 1 33444 468999999999875543 3332 34466666 3666664 457999999888765
Q ss_pred hhHHHHHHHhhcCC
Q 023135 159 DYNQYVTRNLDRGY 172 (287)
Q Consensus 159 ~yd~y~~Rnl~rg~ 172 (287)
--=.-..+-|-|-|
T Consensus 177 G~v~~A~~lLGrpy 190 (308)
T 3op1_A 177 GNVKEAGKLLGAPL 190 (308)
T ss_dssp TCHHHHHHHHSSCC
T ss_pred CCHHHHHhhcCcce
Confidence 43344445454433
No 31
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.06 E-value=2.6e-10 Score=105.22 Aligned_cols=71 Identities=20% Similarity=0.101 Sum_probs=50.5
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCC---EEEEEEecCccccccCCCCCCCHHHHHHHHHh-ccCCccccc
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNT---YLLVGCNNDEDTHKYKGKTVMTDKERYESLRH-CRWVDEVIP 92 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd---~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~-~k~VDeVvi 92 (287)
++++++.|+|||+|.||+.++++|++.+..+ .++|++-.-....-.| .++.+.++|++|++. +..++.+.+
T Consensus 8 ~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K-~~l~s~~~R~~ml~~ai~~~~~~~v 82 (279)
T 1kqn_A 8 EVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKK-KGLIPAYHRVIMAELATKNSKWVEV 82 (279)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCC-TTCCCHHHHHHHHHHHTTTCSSEEE
T ss_pred ceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccc-cCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 5678999999999999999999999876333 3665542111111123 468999999999994 566666654
No 32
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.01 E-value=5.8e-10 Score=100.88 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=49.1
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCC--EEEEEEecCccccccCCCCCCCHHHHHHHHH-hccCCccc
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNT--YLLVGCNNDEDTHKYKGKTVMTDKERYESLR-HCRWVDEV 90 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd--~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~-~~k~VDeV 90 (287)
+++++++|+|||+|.||+.++++|++.+..+ ..|||+.-.+.....+.+++++.++|++|++ ++...+.+
T Consensus 6 ~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k~~~~~~~~R~~m~~~ai~~~~~~ 78 (252)
T 1nup_A 6 PVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGKKDLAASHHRVAMARLALQTSDWI 78 (252)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSSSCCCCHHHHHHHHHHHGGGCSSE
T ss_pred ceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccCCCCCCHHHHHHHHHHHhcCCCce
Confidence 5679999999999999999999999876323 3666533222211122246899999999998 45544443
No 33
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=98.98 E-value=3.6e-10 Score=104.18 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=50.5
Q ss_pred CeEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHh
Q 023135 21 PVRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRH 83 (287)
Q Consensus 21 ~~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~ 83 (287)
+++++++|+|||+|.||+.++++|++.| +.|||+|+++...++ .++.+|.++|++||+.
T Consensus 7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~--d~~~~~v~~~~~~~~--~~~~~~~~~R~~m~~~ 65 (352)
T 2qjt_B 7 YDISVFIGRFQPFHKGHLHNIIIALQNS--KKVIINIGSCFNTPN--IKNPFSFEQRKQMIES 65 (352)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHSE--EEEEEEEEEESCCCC--SSSCSCHHHHHHHHHH
T ss_pred ccEEEEEEecCCCChHHHHHHHHHHHhC--CcEEEEECCCCCCcc--cCCCCCHHHHHHHHHH
Confidence 3579999999999999999999999997 799999998764332 2467899999999995
No 34
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=98.86 E-value=1.8e-08 Score=96.42 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=97.9
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCcc--ccccCCC-CCCCHHHHHHHHHhccCCccccc-CCCCC
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDED--THKYKGK-TVMTDKERYESLRHCRWVDEVIP-DAPWV 97 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~--~~~~Kgr-pv~s~eER~e~V~~~k~VDeVvi-~~p~~ 97 (287)
..|.+-|.||+||.||..+|++|++ . + ++++|.+-.. +. +|. .++|.++|++++..+ .||.|+. +..+.
T Consensus 53 ~~v~~lG~FDg~H~GHq~lI~~a~~-~--~-~~~~Vms~~~~~vq--rg~~~l~~~~~R~~~~~~~-GvD~vielpF~~~ 125 (357)
T 3gmi_A 53 KIVCDFTEYNPLHKGHKYALEKGKE-H--G-IFISVLPGPLERSG--RGIPYFLNRYIRAEMAIRA-GADIVVEGPPMGI 125 (357)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHHT-S--S-EEEEEECCTTSBCT--TSSBCSSCHHHHHHHHHHH-TCSEEEECCCGGG
T ss_pred CEEEEEEecCccCHHHHHHHHHHHH-c--C-CeEEEEcCchHHhc--CCCCcCCCHHHHHHHHHHC-CCCEEEEcCchhh
Confidence 4799999999999999999999999 2 3 5666666443 43 444 489999999999998 8999876 22222
Q ss_pred c-hHHHHh-------hcCCCEEEeCCCcccCC--------CC------------------------CCccH-HH---HHH
Q 023135 98 V-TQDFLD-------KHQIDYVAHDSLPYADA--------TG------------------------SGKDV-YE---FVK 133 (287)
Q Consensus 98 ~-t~efl~-------~~~iD~Vv~G~d~y~~~--------~g------------------------~~~d~-y~---~lK 133 (287)
+ +.+|++ +++++.||.|..+..+. .+ ..+++ .+ .+.
T Consensus 126 ~s~~~Fv~~~v~ll~~l~~~~iv~G~~~~~~~~~~~~~i~~~~~~~~kp~~~~g~ey~~~~~~~l~~pn~il~~y~kai~ 205 (357)
T 3gmi_A 126 MGSGQYMRCLIKMFYSLGAEIIPRGYIPEKTMEKVIDCINKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIY 205 (357)
T ss_dssp SCHHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHTTCCEEEETTEEEETTTCCEEESCCCGGGHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCCCchhHHHHHHHHhcccccccccchhccCcHHHHHHHhccCCChHHHHHHHHHH
Confidence 2 345554 57999999997321110 00 01111 11 122
Q ss_pred h-------cC-eEEEecccCCCChHHHHHHHHHh-hH-----------HHHHHHhhcCC
Q 023135 134 S-------IG-KFKETKRTDGISTSDLIMRIVKD-YN-----------QYVTRNLDRGY 172 (287)
Q Consensus 134 ~-------~G-~~~~~~rT~giSTS~II~RI~~~-yd-----------~y~~Rnl~rg~ 172 (287)
+ .+ .++++||...+|.|.|++.|.+. ++ .|+++.++.|.
T Consensus 206 ~~~~~~~~~~i~~~~i~R~~~~SAS~IR~~i~~g~~~~~~~lVP~~t~~~l~~~~~~G~ 264 (357)
T 3gmi_A 206 KLNREGLKFNPKFVFVKRLEGISGTKIREAIFSGKFEDIKNMLPKTTLSILKELYDNGK 264 (357)
T ss_dssp HHHHTTCCCCCEEEEEECSCCCCHHHHHHHHHTTCGGGTGGGSCHHHHHHHHHHHHTTC
T ss_pred HhCcCcCCCCCeEEEecCCCcccHHHHHHHHHcCChhHHHhcCChHHHHHHHHHHhcCC
Confidence 2 22 67888998899999999988764 12 47777777775
No 35
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=98.41 E-value=5.8e-07 Score=83.52 Aligned_cols=68 Identities=13% Similarity=0.096 Sum_probs=53.5
Q ss_pred eEEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 023135 22 VRVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG---KTVMTDKERYESLRHCRWVDEVIPD 93 (287)
Q Consensus 22 ~rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg---rpv~s~eER~e~V~~~k~VDeVvi~ 93 (287)
.++++ |+||-+|.||+.+|++|++. ++.+||++..++..--... +...+.++|+++++++. ||.|+.+
T Consensus 23 ~V~~v-gtfdgLH~GH~sLI~~A~~~--ad~vVVSffvnP~qf~~~ed~~~yp~tle~d~~lL~~~G-VD~vf~p 93 (280)
T 2ejc_A 23 TIGFV-PTMGYLHEGHLSLVRRARAE--NDVVVVSIFVNPTQFGPNEDYERYPRDFERDRKLLEKEN-VDCIFHP 93 (280)
T ss_dssp CEEEE-EECSCCCHHHHHHHHHHHHH--SSEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHHHHTTT-CSEEECC
T ss_pred EEEEE-cCCccccHHHHHHHHHHHHh--CCEEEEEEeCChHHhcCCcccccCCCCHHHHHHHHHHCC-CCEEEeC
Confidence 35666 89999999999999999999 4799999966553221111 23678999999999997 9999874
No 36
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=97.16 E-value=0.0045 Score=59.89 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=58.4
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cC-C--ccccc---CCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RW-V--DEVIP---DAP 95 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~-V--DeVvi---~~p 95 (287)
.|++.|+|||+|.||..+.+.|...+..+.|++--.... .| .--.+.+.|+++++.+ .. . +.|++ +.+
T Consensus 194 ~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~----~K-~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p~~ 268 (396)
T 1jhd_A 194 KVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK----LK-KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYGFD 268 (396)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC----CC-TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEECC
T ss_pred eEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC----CC-CCCCCHHHHHHHHHHHHHhcCCCcceEEEechHH
Confidence 477899999999999999999998864355554333333 23 3468999999999864 32 1 22321 112
Q ss_pred C---CchHHHH-----hhcCCCEEEeCCCcc
Q 023135 96 W---VVTQDFL-----DKHQIDYVAHDSLPY 118 (287)
Q Consensus 96 ~---~~t~efl-----~~~~iD~Vv~G~d~y 118 (287)
. +++..++ +.+++.+++.|.|+.
T Consensus 269 m~~aGPreailhaiirkn~G~t~fIVGrDha 299 (396)
T 1jhd_A 269 MLYAGPREAVLHAYFRQNMGATHFIIGRDHA 299 (396)
T ss_dssp CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred hhcCCchHHHHHHHHHHcCCCcEEEECCCCC
Confidence 1 2222222 335889999998763
No 37
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=97.04 E-value=0.0017 Score=60.20 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=51.8
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC---CCCCCHHHHHHHHHhccCCccccc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG---KTVMTDKERYESLRHCRWVDEVIP 92 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg---rpv~s~eER~e~V~~~k~VDeVvi 92 (287)
.|.+-|. +|.||..++++|++.+ +.+||.+..++..--... +.+.+.++|.++++.+. ||.|+.
T Consensus 21 ~VpTmG~---lH~GH~~Li~~A~~~a--~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll~~~G-vD~vf~ 87 (276)
T 1v8f_A 21 FVPTMGY---LHRGHLALVERARREN--PFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALLQEAG-VDLLFA 87 (276)
T ss_dssp EEEECSS---CCHHHHHHHHHHHHHC--SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHTT-CSEEEC
T ss_pred EEEeCCC---ccHHHHHHHHHHHHhC--CEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHHHhCC-CCEEEe
Confidence 4677788 9999999999999994 789999999875432211 35899999999999984 998875
No 38
>1pei_A PEPC22; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=96.18 E-value=0.0012 Score=40.63 Aligned_cols=19 Identities=11% Similarity=0.328 Sum_probs=14.6
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q 023135 216 MRRNEWVENADRLVAGFLE 234 (287)
Q Consensus 216 ~~~~~w~~~~~~~~~~f~~ 234 (287)
+++++|+++|++||.+||.
T Consensus 8 eliskWe~kSre~I~~Fl~ 26 (26)
T 1pei_A 8 DLIQKWEEKSREFIGSXXX 26 (26)
T ss_dssp HHTTHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHcccC
Confidence 4579999999999999984
No 39
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=96.16 E-value=0.015 Score=53.96 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=49.7
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG---KTVMTDKERYESLRHCRWVDEVIPD 93 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg---rpv~s~eER~e~V~~~k~VDeVvi~ 93 (287)
|.+-|. +|.||..++++|++.+ +.+||.+..++.---... ....+.+++.++++.+ .||.|+.+
T Consensus 28 VpTmG~---lH~GH~~LI~~a~~~a--~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~-GvD~vf~p 94 (283)
T 3ag6_A 28 IPTMGA---LHDGHLTMVRESVSTN--DITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEV-GADIVFHP 94 (283)
T ss_dssp EEECSS---CCHHHHHHHHHHHTTS--SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHH-TCSEEECC
T ss_pred EECCcc---ccHHHHHHHHHHHHhC--CEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeC
Confidence 447785 9999999999999984 789999888774322111 2478999999999987 48988863
No 40
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=96.08 E-value=0.013 Score=54.83 Aligned_cols=67 Identities=18% Similarity=0.093 Sum_probs=50.1
Q ss_pred EEEcCccCcCCHHHHHHHHHHhc-cCCCCEEEEEEecCccccccCC---CCCCCHHHHHHHHHhccCCcccccC
Q 023135 24 VYADGIYDLFHFGHARALEQAKK-LFPNTYLLVGCNNDEDTHKYKG---KTVMTDKERYESLRHCRWVDEVIPD 93 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~-lf~gd~LIVGV~sD~~~~~~Kg---rpv~s~eER~e~V~~~k~VDeVvi~ 93 (287)
|.+-+++.-+|.||+.++++|++ .+ +.+||.+-.++.---... +...+.++++++++.+ .||.|+.+
T Consensus 35 vg~VpTmG~LH~GH~sLI~~A~~~~a--~~vVvSffvnP~qF~~~ed~~~yprtle~d~~lL~~~-GVD~vf~p 105 (301)
T 3cov_A 35 VMLVPTMGALHEGHLALVRAAKRVPG--SVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAE-GVEIAFTP 105 (301)
T ss_dssp EEEEEECSCCCHHHHHHHHHHHTSTT--EEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHHHHHT-TCCEEECC
T ss_pred EEEEecCCcccHHHHHHHHHHHHhcC--CEEEEEEcCChhhcCCccccccCCCCHHHHHHHHHhC-CCCEEEeC
Confidence 33334555599999999999999 74 789999988874332211 2488999999999988 48888763
No 41
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=95.11 E-value=0.037 Score=51.59 Aligned_cols=63 Identities=21% Similarity=0.134 Sum_probs=44.5
Q ss_pred EEE--EcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC----CCCCCHHHHHHHHHhccCCccccc
Q 023135 23 RVY--ADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG----KTVMTDKERYESLRHCRWVDEVIP 92 (287)
Q Consensus 23 rVy--~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg----rpv~s~eER~e~V~~~k~VDeVvi 92 (287)
+++ +-|+ +|.||+.++++|++. +|.+||+|--++.-- ..+ +..-+.+.=+++++.+ .||.|+.
T Consensus 27 IgfVPTMG~---LH~GHlsLv~~Ar~~--~d~vVVSIFVNP~QF-~~~EDl~~YPRtle~D~~~l~~~-gvd~vF~ 95 (287)
T 3q12_A 27 IALVPTMGN---LHEGHMTLVDEAKTR--ADVVVVTIFVNPLQF-ERPDDLAHYPRTLQEDCEKLTRH-GADLVFA 95 (287)
T ss_dssp EEEEEECSS---CCHHHHHHHHHHHTT--SSEEEEEECCCGGGC-SSHHHHHHSCCCHHHHHHHHHHH-TCSEEEC
T ss_pred EEEEcCCCc---ccHHHHHHHHHHHHh--CCEEEEEeccCcccC-CCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence 566 6786 999999999999998 599999998887421 111 1245666666666655 4676654
No 42
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=94.83 E-value=0.047 Score=51.87 Aligned_cols=89 Identities=12% Similarity=-0.071 Sum_probs=58.3
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc-cCC-cc--ccc-CCCC-
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC-RWV-DE--VIP-DAPW- 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~-k~V-De--Vvi-~~p~- 96 (287)
.|++-|+|||+|.||..+.++|.... +.|++--.... .| .--.+.+.|+++++.+ ... +. |++ ..|+
T Consensus 157 ~VvafqTrNPiHrgH~~l~~~ale~~--d~vll~P~~g~----~K-~~d~~~~~R~~~~~~~i~~~~p~~~~~l~~~p~~ 229 (349)
T 1v47_A 157 KVVAFQTRNAPHRAHEYLIRLGLELA--DGVLVHPILGA----KK-PDDFPTEVIVEAYQALIRDFLPQERVAFFGLATP 229 (349)
T ss_dssp SEEEEEESSCCCHHHHHHHHHHHHHS--SEEEEEEBCSC----CC-TTSCCHHHHHHHHHHHHHHHSCGGGEEECCBCSC
T ss_pred eEEEeecCCCCchHHHHHHHHHHHhC--CcEEEEECCCC----CC-CCCCCHHHHHHHHHHHHhhcCCCcceEEEechHH
Confidence 46779999999999999999999874 65655433333 13 3469999999999964 322 22 322 2232
Q ss_pred ----CchHHHH-----hhcCCCEEEeCCCcc
Q 023135 97 ----VVTQDFL-----DKHQIDYVAHDSLPY 118 (287)
Q Consensus 97 ----~~t~efl-----~~~~iD~Vv~G~d~y 118 (287)
+++.-.+ +.+++.+++.|.|+.
T Consensus 230 m~~aGPreailhaiirkn~G~t~fIVGrDha 260 (349)
T 1v47_A 230 MRYAGPKEAVFHALVRKNFGATHFLVGRDHA 260 (349)
T ss_dssp CCCCTHHHHHHHHHHHHHTTCSEEEECTTTT
T ss_pred hhcCCcHHHHHHHHHHHcCCCcEEEECcCCC
Confidence 2222222 235889999998763
No 43
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=94.76 E-value=0.095 Score=49.40 Aligned_cols=63 Identities=17% Similarity=0.122 Sum_probs=48.1
Q ss_pred EEE--EcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC----CCCCCHHHHHHHHHhccCCccccc
Q 023135 23 RVY--ADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG----KTVMTDKERYESLRHCRWVDEVIP 92 (287)
Q Consensus 23 rVy--~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg----rpv~s~eER~e~V~~~k~VDeVvi 92 (287)
+++ +-|. +|.||+.++++|++. ++.+||.|-.++.--. .+ +..-+.++-+++++.+ .||.|+.
T Consensus 45 IgfVPTMG~---LH~GHlsLi~~A~~~--~d~vVVSIFVNP~QF~-~~EDl~~YPRtle~D~~ll~~~-GvD~vF~ 113 (314)
T 3inn_A 45 IGFVPTMGY---LHKGHLELVRRARVE--NDVTLVSIFVNPLQFG-ANEDLGRYPRDLERDAGLLHDA-QVDYLFA 113 (314)
T ss_dssp EEEEEECSS---CCHHHHHHHHHHHHH--CSEEEEEECCCGGGSC-TTSSTTTCCCCHHHHHHHHHHT-TCSEEEC
T ss_pred EEEEcCCCc---cCHHHHHHHHHHHHh--CCEEEEEECCChhhcC-CCccccccCCCHHHHHHHHHhC-CCCEEEC
Confidence 555 6674 999999999999999 5899999988874221 11 2467889999988876 5787764
No 44
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=94.46 E-value=0.07 Score=49.60 Aligned_cols=66 Identities=15% Similarity=-0.009 Sum_probs=50.0
Q ss_pred EEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccC---CCCCCCHHHHHHHHHhccCCccccc
Q 023135 24 VYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYK---GKTVMTDKERYESLRHCRWVDEVIP 92 (287)
Q Consensus 24 Vy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~K---grpv~s~eER~e~V~~~k~VDeVvi 92 (287)
|-+-.|..-+|.||+.++++|++.+ +.+||.+-.++..-... .+...+.++++++++.+ .||.|+.
T Consensus 24 ig~VPTMG~LH~GH~sLi~~A~~~~--d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll~~~-GvD~vF~ 92 (283)
T 3uk2_A 24 TAFVPTMGNLHEGHLSLMRLARQHG--DPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKLQKE-NVYVLFA 92 (283)
T ss_dssp CEEEEECSSCCHHHHHHHHHHHTTC--SSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHHHTT-TCSEEEC
T ss_pred EEEECCCCcccHHHHHHHHHHHHhC--CEEEEEEcCCHHHcCCcccccccCCCHHHHHHHHHHc-CCCEEEe
Confidence 4455688899999999999999984 78999998877532110 13488999999999876 5776664
No 45
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=93.20 E-value=0.18 Score=46.95 Aligned_cols=56 Identities=16% Similarity=0.066 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC----CCCCCHHHHHHHHHhccCCccccc
Q 023135 32 LFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG----KTVMTDKERYESLRHCRWVDEVIP 92 (287)
Q Consensus 32 lfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg----rpv~s~eER~e~V~~~k~VDeVvi 92 (287)
-+|-||+.++++|++ + |.+||.|--++.-- ..+ +..-+.+.=+++++.+ .||.|+.
T Consensus 35 aLH~GHlsLv~~Ar~-~--d~VVVSIFVNP~QF-~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~ 94 (285)
T 3mxt_A 35 FLHDGHLSLVKHAKT-Q--DKVIVSIFVNPMQF-GPNEDFSSYPRDLERDIKMCQDN-GVDMVFI 94 (285)
T ss_dssp SCCHHHHHHHHHHTT-S--SEEEEEECCCGGGC-CTTSCTTTSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred cccHHHHHHHHHHHh-C--CEEEEEeccCcccc-CCchhhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence 399999999999999 5 89999998877421 111 2356677777777765 5776664
No 46
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=91.71 E-value=0.19 Score=46.36 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=44.1
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCC----CCCCCHHHHHHHHHhccCCccccc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKG----KTVMTDKERYESLRHCRWVDEVIP 92 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kg----rpv~s~eER~e~V~~~k~VDeVvi 92 (287)
+++++ |---+|-||+.++++|++. ++.+||.|--++.-- ..+ +..-+.+.=+++++.. .||.|+.
T Consensus 26 ig~VP-TMGaLH~GHlsLv~~Ar~~--~d~vVVSIFVNP~QF-~~~EDl~~YPRtle~D~~ll~~~-gvD~vF~ 94 (264)
T 3n8h_A 26 IGFVP-TMGALHNGHISLIKKAKSE--NDVVIVSIFVNPTQF-NNPNDYQTYPNQLQQDIQILASL-DVDVLFN 94 (264)
T ss_dssp EEEEE-ECSSCCHHHHHHHHHHHHH--CSEEEEEECCCGGGC-SCHHHHHHSCCCHHHHHHHHHHT-TCSEEEC
T ss_pred EEEEC-CCcchhHHHHHHHHHHHHh--CCEEEEEEccCcccC-CCcchhhcCCCCHHHHHHHHHHC-CCCEEEC
Confidence 34443 3446999999999999998 589999998887421 111 1245666666777665 5776664
No 47
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=89.73 E-value=0.0048 Score=40.09 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=29.6
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023135 182 VKEKRLRMNMGLKKLREKVKKHQEKIQIVAKTAS 215 (287)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (287)
+.++++.+|+.++++++|++++.++++++.+.++
T Consensus 1 InEKky~lQ~~VDk~K~kvk~VEeksK~~V~~vE 34 (35)
T 1peh_A 1 XNEKKYHLQERVDKVKKKVKDVEEKSKEWVQKVE 34 (35)
T ss_dssp -CCTTTCCSSSTTGGGGGTTGGGTTTHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 3578999999999999999999999998887763
No 48
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=82.13 E-value=4.2 Score=40.24 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=51.4
Q ss_pred EEEEcCccCcCCHHHHHHHHHHh-ccCCCCEEEEE-EecCccccccCCCCCCCHHHHHHHHHhcc--CC-ccccc-CCCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAK-KLFPNTYLLVG-CNNDEDTHKYKGKTVMTDKERYESLRHCR--WV-DEVIP-DAPW 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk-~lf~gd~LIVG-V~sD~~~~~~Kgrpv~s~eER~e~V~~~k--~V-DeVvi-~~p~ 96 (287)
.|++-.+.+|+|.||..+|.+|. ... +-|+|- +.. . .| .-=++.+-|+++.+.+- |. +.|++ ..|+
T Consensus 190 ~v~afqtrnP~HraH~e~~~~~a~e~~--~~lll~pl~g-~----~k-~~di~~~~r~~~~~~~~~~yp~~~~~l~~~p~ 261 (511)
T 1g8f_A 190 RVVAFQTRNPMHRAHRELTVRAAREAN--AKVLIHPVVG-L----TK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPL 261 (511)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHT--CEEEEEEBCS-B----CS-TTCCCHHHHHHHHHHHGGGSCTTSEEECCBCC
T ss_pred cEEEEecCCCCchHHHHHHHHHHHHcC--CcEEEEECCC-C----CC-CCCCCHHHHHHHHHHHHHhCCcccEEEEecch
Confidence 47789999999999966665544 544 333332 222 1 12 22589999999988762 31 22332 1232
Q ss_pred C-----chHH-----HHhhcCCCEEEeCCCc
Q 023135 97 V-----VTQD-----FLDKHQIDYVAHDSLP 117 (287)
Q Consensus 97 ~-----~t~e-----fl~~~~iD~Vv~G~d~ 117 (287)
. +..- +-+.+++..++.|-|+
T Consensus 262 ~m~yaGprea~~hai~r~n~G~th~IvGrdh 292 (511)
T 1g8f_A 262 AMRMSGDREAVWHAIIRKNYGASHFIVGRDH 292 (511)
T ss_dssp BCCCCHHHHHHHHHHHHHHTTCSEEECCTTT
T ss_pred hhhccCcHHHHHHHHHHHhCCCceEEeCCCC
Confidence 1 1222 2234699999998764
No 49
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=81.14 E-value=9.8 Score=30.96 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=41.2
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhh
Q 023135 182 VKEKRLRMNMGLKKLREKVKKHQEKIQI----VAKTASMRRNEWVENADRLVAGFLEMFEERCHKM 243 (287)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~ 243 (287)
|...+..|+..|..+++++..+...+.- ....+..++.+|+.-|+....--...+......|
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~aaeeLf~~~~~rv~rM 70 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQAAEVLFKPMAERIRLA 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456777888888888888776553321 1345678999999999887766555554444444
No 50
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=58.24 E-value=14 Score=36.57 Aligned_cols=55 Identities=15% Similarity=-0.033 Sum_probs=39.9
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhc-cCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc
Q 023135 23 RVYADGIYDLFHFGHARALEQAKK-LFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC 84 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~-lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~ 84 (287)
.|++-=+++|+|.||..++++|.. .+ +.|+|-...-. .| ..-++.+-|++.++.+
T Consensus 165 ~v~afqtrnP~Hr~H~~l~~~a~~~~~--~~llv~p~~g~----~k-~~di~~~~R~~~~~~~ 220 (546)
T 2gks_A 165 KIVAFQTRNPMHRVHEELTKRAMEKVG--GGLLLHPVVGL----TK-PGDVDVYTRMRIYKVL 220 (546)
T ss_dssp CEEEECCSSCCCHHHHHHHHHHHHHHT--SEEEECCBCSB----CC-TTSCCHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHhcC--CcEEEEeCcCC----CC-CCCCCHHHHHHHHHHH
Confidence 477788999999999999999986 54 44555322221 12 2357999999998876
No 51
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=56.47 E-value=20 Score=22.37 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 023135 190 NMGLKKLREKVKKHQEKIQIVAKTA 214 (287)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (287)
...+.++++|+++-..++++++|.+
T Consensus 3 rkrlrkfrnkikeklkkigqkiqgl 27 (32)
T 1lyp_A 3 RKRLRKFRNKIKEKLKKIGQKIQGL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677777777777777777654
No 52
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=52.30 E-value=22 Score=34.13 Aligned_cols=88 Identities=11% Similarity=-0.034 Sum_probs=51.2
Q ss_pred EEEEcCccCcCCHHHHHHHHHHh-ccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhcc--CC-ccccc-CCCC-
Q 023135 23 RVYADGIYDLFHFGHARALEQAK-KLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCR--WV-DEVIP-DAPW- 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk-~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k--~V-DeVvi-~~p~- 96 (287)
.|++-.+.+|+|.||..++.+|+ ... +-|+|- +.+-..| .--++.+-|+++.+.+- |. +.|++ ..|+
T Consensus 189 ~VvafqtrNP~HraH~e~~~r~a~e~~--~~lllh----PlvG~tK-~~Dip~~vR~~~~~~~l~~yp~~~v~l~~~p~~ 261 (395)
T 1r6x_A 189 RVVAFQTRNPMHRAHRELTVRAAREAN--AKVLIH----PVVGLTK-PGDIDHHTRVRVYQEIIKRYPNGIAFLSLLPLA 261 (395)
T ss_dssp CEEEECCSSCCCHHHHHHHHHHHHHTT--CEEEEC----CBCSBCC-TTCCCHHHHHHHHHHHGGGSSTTCEEECCBCCB
T ss_pred cEEEeccCCCcchhhHHHHHHHHHHcC--CcEEEE----ECCCCCC-CCCCCHHHHHHHHHHHHHhCCCccEEEEecchh
Confidence 47889999999999966665555 443 433332 1111112 22589999999888762 32 22332 1222
Q ss_pred ----CchHH-----HHhhcCCCEEEeCCCc
Q 023135 97 ----VVTQD-----FLDKHQIDYVAHDSLP 117 (287)
Q Consensus 97 ----~~t~e-----fl~~~~iD~Vv~G~d~ 117 (287)
++..- +-+.+++..++.|-|+
T Consensus 262 mryAGPrEai~HAiiRkN~GcthfIVGRDh 291 (395)
T 1r6x_A 262 MRMSGDREAVWHAIIRKNYGASHFIVGRDH 291 (395)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCSEEEECTTT
T ss_pred hhhcCcHHHHHHHHHHHHcCCceEEECCCC
Confidence 11222 2234699999999764
No 53
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=49.45 E-value=1e+02 Score=29.71 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=19.0
Q ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023135 184 EKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRRNEWVE 223 (287)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 223 (287)
+..-.|++.|.+|++.|..++....+..+-+..+.+.|+.
T Consensus 60 k~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~ 99 (390)
T 1deq_A 60 EVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRG 99 (390)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3334455555555555555554444444433344444443
No 54
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=48.48 E-value=9.1 Score=37.45 Aligned_cols=23 Identities=39% Similarity=0.892 Sum_probs=17.7
Q ss_pred CCCCeEEEEcC--ccCcCCHHHHHH
Q 023135 18 RDRPVRVYADG--IYDLFHFGHARA 40 (287)
Q Consensus 18 ~~r~~rVy~~G--~FDlfH~GHi~~ 40 (287)
.+..+.+|+.| ++|.+|+||++-
T Consensus 22 ~~~~v~~YvcGPtvy~~~HIGHaR~ 46 (462)
T 3tqo_A 22 ESGKVKLYVCGMTVYDYMHIGHGRS 46 (462)
T ss_dssp STTEEEEEECCCBTTSCCBHHHHHH
T ss_pred CCCeEEEEeCCCcCCCCCchhhhHH
Confidence 33456778877 799999999864
No 55
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=44.91 E-value=18 Score=35.94 Aligned_cols=88 Identities=13% Similarity=-0.011 Sum_probs=53.0
Q ss_pred EEEEcCccCcCCHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhc--cCC-ccccc---CCCC
Q 023135 23 RVYADGIYDLFHFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHC--RWV-DEVIP---DAPW 96 (287)
Q Consensus 23 rVy~~G~FDlfH~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~--k~V-DeVvi---~~p~ 96 (287)
.|++-=+++|+|.||..++++|.... ++.|+|-...-. .| ..-++.+-|++.++.+ .|- +.|++ +.+.
T Consensus 192 ~v~afqtrnP~Hr~H~~l~~~a~~~~-~~~llv~pl~g~----~k-~~di~~~~R~~~~~~~~~~~p~~~v~l~~~p~~m 265 (573)
T 1m8p_A 192 RVVAFQTRNPMHRAHRELTVRAARSR-QANVLIHPVVGL----TK-PGDIDHFTRVRAYQALLPRYPNGMAVLGLLGLAM 265 (573)
T ss_dssp SEEEECCSSCCCHHHHHHHHHHHHHT-TCEEEECCBCCC----CC-TTCHHHHHHHHHHHHHGGGSSTTSEEECBBCCCC
T ss_pred eEEEEeeCCCcchhhHHHHHHHHHhc-CCcEEEEeCCCC----CC-CCCCCHHHHHHHHHHHHHhCCCCcEEEEecCchh
Confidence 36778899999999999999988552 344554321111 12 2357999999998875 232 22322 2221
Q ss_pred ---Cch-----HHHHhhcCCCEEEeCCC
Q 023135 97 ---VVT-----QDFLDKHQIDYVAHDSL 116 (287)
Q Consensus 97 ---~~t-----~efl~~~~iD~Vv~G~d 116 (287)
++. .-+.+.+++..++.|-+
T Consensus 266 ~~agprea~~ha~ir~n~G~th~ivgrd 293 (573)
T 1m8p_A 266 RMGGPREAIWHAIIRKNHGATHFIVGRD 293 (573)
T ss_dssp CCCHHHHHHHHHHHHHHHTCSEEEECTT
T ss_pred hccCchHHHHHHHHHHHCCCCeEEECCC
Confidence 111 22445568888887754
No 56
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=41.03 E-value=14 Score=35.72 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=16.5
Q ss_pred CCCeEEEEcCcc--CcCCHHHHH
Q 023135 19 DRPVRVYADGIY--DLFHFGHAR 39 (287)
Q Consensus 19 ~r~~rVy~~G~F--DlfH~GHi~ 39 (287)
+..+++|+.|-- +++|+||++
T Consensus 20 ~~~v~~yv~gPt~y~~~HiGHar 42 (461)
T 1li5_A 20 AGEVGMYVCGITVYDLCHIGHGR 42 (461)
T ss_dssp TTEEEEEECCCBSSSCCBHHHHH
T ss_pred CCCeeEEEcCCcCCCCCcccccH
Confidence 444678888854 999999997
No 57
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=39.97 E-value=14 Score=35.06 Aligned_cols=21 Identities=38% Similarity=0.602 Sum_probs=16.7
Q ss_pred CCCeEEEEcCcc--CcCCHHHHH
Q 023135 19 DRPVRVYADGIY--DLFHFGHAR 39 (287)
Q Consensus 19 ~r~~rVy~~G~F--DlfH~GHi~ 39 (287)
+.++.+|+.|-+ +++|+||++
T Consensus 37 ~~~v~~y~~gPt~yg~~HiGHar 59 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAA 59 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHH
T ss_pred CCCceEEeCCCcCCCCcCccccH
Confidence 445678888866 999999997
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=33.05 E-value=1.1e+02 Score=30.73 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=8.9
Q ss_pred CChHHHHHHHHHhhHHH
Q 023135 147 ISTSDLIMRIVKDYNQY 163 (287)
Q Consensus 147 iSTS~II~RI~~~yd~y 163 (287)
..-+.+|+.|...|+.+
T Consensus 60 rDltkrINELKnqLEdl 76 (562)
T 3ghg_A 60 QDFTNRINKLKNSLFEY 76 (562)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34444555555555555
No 59
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=32.67 E-value=60 Score=22.04 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=4.0
Q ss_pred HHHhhHHHHHHHHH
Q 023135 221 WVENADRLVAGFLE 234 (287)
Q Consensus 221 w~~~~~~~~~~f~~ 234 (287)
-++|+.+|+.+|..
T Consensus 27 LE~NAeeFV~~fVQ 40 (44)
T 3m91_B 27 LEENAEDFVRAYVQ 40 (44)
T ss_dssp HHHTC---------
T ss_pred HHHhHHHHHHHHHH
Confidence 38899999999976
No 60
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=29.82 E-value=24 Score=35.57 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=18.0
Q ss_pred CCCCCCCCCeEEEEcC--ccCcCCHHHHH
Q 023135 13 SAEPPRDRPVRVYADG--IYDLFHFGHAR 39 (287)
Q Consensus 13 ~~~~~~~r~~rVy~~G--~FDlfH~GHi~ 39 (287)
.++...++.+.|++.| ...++|.||+|
T Consensus 136 ~~~~~~~~~V~ve~~spN~~~plHvGHlR 164 (607)
T 1f7u_A 136 SCKLVENKKVIIEFSSPNIAKPFHAGHLR 164 (607)
T ss_dssp CCCCSSCCEEEEECCCCBTTSCCBGGGHH
T ss_pred CCcccCCCeEEEEecCCCCCCCCccchHH
Confidence 3333444555666555 68999999998
No 61
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=28.58 E-value=31 Score=34.77 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=24.9
Q ss_pred CCCCCCCCCCeEEEEcC--ccCcCCHHHHH------HHHHHhccCCCCEEEE
Q 023135 12 NSAEPPRDRPVRVYADG--IYDLFHFGHAR------ALEQAKKLFPNTYLLV 55 (287)
Q Consensus 12 ~~~~~~~~r~~rVy~~G--~FDlfH~GHi~------~L~qAk~lf~gd~LIV 55 (287)
..++...++.+.|++.| ..+++|.||++ .|.+..+.. |-.++.
T Consensus 111 G~~~~~~~~~V~ve~~spN~~~~~HiGH~Rs~iigD~laR~l~~~-G~~V~~ 161 (629)
T 2zue_A 111 GSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL-GYEVEV 161 (629)
T ss_dssp TCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT-TCEEEE
T ss_pred CCCccCCCCEEEEEeeCCCCCCCCccchhHHHHHHHHHHHHHHHc-CCCceE
Confidence 33333445555666655 46899999997 344444444 444444
No 62
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=26.56 E-value=33 Score=33.52 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=13.9
Q ss_pred CCCCeEEEEcC-cc--CcCCHHHHHH
Q 023135 18 RDRPVRVYADG-IY--DLFHFGHARA 40 (287)
Q Consensus 18 ~~r~~rVy~~G-~F--DlfH~GHi~~ 40 (287)
.++++..++.+ -+ +++|+||++-
T Consensus 15 ~~~~~~~v~~~~py~ng~lHiGH~r~ 40 (560)
T 3h99_A 15 QVAKKILVTCASPYANGSIHLGHMLE 40 (560)
T ss_dssp --CCEEEEEECCCBTTSCCBHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCCcchhhHHH
Confidence 34444444444 55 8999999963
No 63
>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}
Probab=25.09 E-value=2.9e+02 Score=22.77 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHhccCCCCEEEEEEecCccccccCCCCCCCHHHHHHHHHhccCCcccccC------CCC-CchHHHHhhc
Q 023135 34 HFGHARALEQAKKLFPNTYLLVGCNNDEDTHKYKGKTVMTDKERYESLRHCRWVDEVIPD------APW-VVTQDFLDKH 106 (287)
Q Consensus 34 H~GHi~~L~qAk~lf~gd~LIVGV~sD~~~~~~Kgrpv~s~eER~e~V~~~k~VDeVvi~------~p~-~~t~efl~~~ 106 (287)
-+|=..+|+.+++. | +.+|+++... .....++.+.=..+.|.|+.. -|. .+....++++
T Consensus 118 ~p~~~~ll~~Lk~~--g--~~i~i~~~~~----------~~~~~L~~~gl~~~Fd~i~~~~~~~~~KP~p~~~~~a~~~l 183 (250)
T 4gib_A 118 LPGIESLLIDVKSN--N--IKIGLSSASK----------NAINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKGL 183 (250)
T ss_dssp CTTHHHHHHHHHHT--T--CEEEECCSCT----------THHHHHHHHTCGGGCSEECCGGGCCSCTTSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHhc--c--cccccccccc----------hhhhHhhhcccccccceeecccccCCCCCcHHHHHHHHHHh
Confidence 45667788888776 2 4455554321 111122211111355666531 111 0123445555
Q ss_pred CC---CEEEeCCCcccCCCCCCccHHHHHHhcC-eEEEecccCCC--------ChHHH-HHHHHHhhHHHHHHH
Q 023135 107 QI---DYVAHDSLPYADATGSGKDVYEFVKSIG-KFKETKRTDGI--------STSDL-IMRIVKDYNQYVTRN 167 (287)
Q Consensus 107 ~i---D~Vv~G~d~y~~~~g~~~d~y~~lK~~G-~~~~~~rT~gi--------STS~I-I~RI~~~yd~y~~Rn 167 (287)
++ ++++.|+.+. | .+..+++| ..+.+...+.. |-++| +..|.+.|++|+-|.
T Consensus 184 g~~p~e~l~VGDs~~--------D-i~aA~~aG~~~i~v~~~~~~~~ad~vi~~l~eL~~~~i~~~~n~~~~~~ 248 (250)
T 4gib_A 184 NVNPQNCIGIEDASA--------G-IDAINSANMFSVGVGNYENLKKANLVVDSTNQLKFEYIQEKYNEYIVRR 248 (250)
T ss_dssp TCCGGGEEEEESSHH--------H-HHHHHHTTCEEEEESCTTTTTTSSEEESSGGGCCHHHHHHHHHHHHHHC
T ss_pred CCChHHeEEECCCHH--------H-HHHHHHcCCEEEEECChhHhccCCEEECChHhCCHHHHHHHHHHHHHHh
Confidence 54 6888887442 2 45577888 55555433222 33444 456666677776653
No 64
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=24.72 E-value=3.8e+02 Score=24.01 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.1
Q ss_pred hHHHHH
Q 023135 192 GLKKLR 197 (287)
Q Consensus 192 ~~~~~~ 197 (287)
++.+|+
T Consensus 67 ~~eelr 72 (273)
T 3s84_A 67 QAEQLR 72 (273)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 333333
No 65
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=24.12 E-value=3.5e+02 Score=23.97 Aligned_cols=55 Identities=13% Similarity=0.261 Sum_probs=32.7
Q ss_pred hhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhh
Q 023135 190 NMGLKKLRE------KVKKHQEKIQIVAKTASMRRNEWVENADRLVAGFLEMFEERCHKMG 244 (287)
Q Consensus 190 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~f~~~f~~~~~~~~ 244 (287)
|.++++|++ |+..++.|+..--............|.+.++.+.+.+|.+.....|
T Consensus 135 KlKvdELEK~~KdSeKI~RNQsKLssAEtaYkqvcsDiInkMnkll~n~~riineaasavw 195 (294)
T 3caz_A 135 KVKLDNLEKKNKDQERIERNQQKFKDAEAAYSSVCADLIQKMETVWKKHVSIFAEAASAVW 195 (294)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHhccchHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666654 5555555544322222223445567778899999999997665444
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.84 E-value=2.6e+02 Score=28.07 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=24.3
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023135 183 KEKRLRMNMGLKKLREKVKKHQEKIQIVAKTASMRR 218 (287)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (287)
.+-.-.|.++|..|+.+|.++..++..+...|++++
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~ 144 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQL 144 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333446788888888888888777766555555443
Done!