Query 023136
Match_columns 287
No_of_seqs 121 out of 1531
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 5.3E-30 1.1E-34 225.9 18.8 228 10-237 64-296 (302)
2 PTZ00343 triose or hexose phos 100.0 4.8E-28 1E-32 217.0 23.3 226 10-235 113-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 4.1E-28 8.8E-33 210.3 12.7 237 2-240 70-313 (316)
4 PF06027 DUF914: Eukaryotic pr 100.0 7.7E-27 1.7E-31 204.8 19.9 231 3-239 71-310 (334)
5 PLN00411 nodulin MtN21 family 99.9 9.6E-26 2.1E-30 201.6 22.6 219 17-239 84-333 (358)
6 PF08449 UAA: UAA transporter 99.9 1.2E-25 2.7E-30 198.0 22.6 233 5-239 58-302 (303)
7 KOG1444 Nucleotide-sugar trans 99.9 2.3E-24 4.9E-29 183.2 16.2 242 1-242 64-308 (314)
8 PRK11689 aromatic amino acid e 99.9 2.1E-23 4.6E-28 183.2 22.5 214 11-236 61-289 (295)
9 PRK11453 O-acetylserine/cystei 99.9 3.1E-23 6.7E-28 182.5 23.4 230 7-237 54-290 (299)
10 TIGR00950 2A78 Carboxylate/Ami 99.9 4.7E-23 1E-27 177.7 21.4 212 10-229 45-259 (260)
11 PRK15430 putative chlorampheni 99.9 2.1E-22 4.5E-27 177.0 20.6 209 18-237 80-288 (296)
12 PRK11272 putative DMT superfam 99.9 5.6E-22 1.2E-26 173.9 22.3 214 14-237 71-288 (292)
13 PRK10532 threonine and homoser 99.9 3.7E-21 7.9E-26 168.8 23.0 209 11-236 71-283 (293)
14 TIGR03340 phn_DUF6 phosphonate 99.9 2.7E-21 5.8E-26 168.8 14.7 206 18-231 70-280 (281)
15 KOG1443 Predicted integral mem 99.9 1.6E-20 3.5E-25 157.8 14.7 221 12-232 85-313 (349)
16 KOG1442 GDP-fucose transporter 99.8 3.5E-22 7.7E-27 165.2 2.6 233 11-244 102-337 (347)
17 COG5070 VRG4 Nucleotide-sugar 99.8 5.3E-20 1.1E-24 148.2 11.4 239 2-242 59-304 (309)
18 COG0697 RhaT Permeases of the 99.8 1.1E-17 2.4E-22 145.8 24.2 207 17-235 76-288 (292)
19 KOG1580 UDP-galactose transpor 99.8 3E-19 6.5E-24 145.0 12.6 224 8-233 82-312 (337)
20 KOG2765 Predicted membrane pro 99.8 1.8E-18 3.9E-23 149.3 16.0 228 7-236 151-392 (416)
21 KOG1581 UDP-galactose transpor 99.8 1E-17 2.2E-22 141.1 19.0 230 7-238 79-317 (327)
22 PF04142 Nuc_sug_transp: Nucle 99.8 7.7E-18 1.7E-22 143.1 18.1 209 12-224 18-243 (244)
23 KOG3912 Predicted integral mem 99.8 1E-17 2.2E-22 139.3 15.9 229 8-236 83-336 (372)
24 KOG1583 UDP-N-acetylglucosamin 99.8 1.8E-18 4E-23 143.5 10.1 232 7-239 60-319 (330)
25 KOG2234 Predicted UDP-galactos 99.7 2.7E-16 5.7E-21 136.0 19.1 224 12-239 93-327 (345)
26 COG2962 RarD Predicted permeas 99.7 7.8E-16 1.7E-20 129.7 20.9 213 17-241 78-290 (293)
27 PF03151 TPT: Triose-phosphate 99.7 7.4E-17 1.6E-21 128.0 14.0 143 92-234 1-153 (153)
28 TIGR00688 rarD rarD protein. T 99.7 2E-16 4.4E-21 136.2 17.7 182 15-209 74-255 (256)
29 TIGR00776 RhaT RhaT L-rhamnose 99.7 4.5E-16 9.7E-21 136.2 20.1 211 9-234 53-288 (290)
30 KOG4510 Permease of the drug/m 99.7 1.2E-18 2.7E-23 143.9 3.0 215 12-235 97-326 (346)
31 KOG1582 UDP-galactose transpor 99.7 8.5E-17 1.9E-21 133.3 12.4 231 6-237 101-335 (367)
32 COG5006 rhtA Threonine/homoser 99.7 2.4E-15 5.1E-20 123.8 16.7 212 8-235 68-283 (292)
33 KOG2766 Predicted membrane pro 99.7 3.7E-17 8.1E-22 134.3 2.8 216 9-234 76-299 (336)
34 TIGR00803 nst UDP-galactose tr 99.4 2.3E-12 5E-17 108.6 11.0 193 35-232 2-222 (222)
35 PF00892 EamA: EamA-like trans 99.2 2.4E-10 5.2E-15 86.8 10.8 124 101-233 1-125 (126)
36 COG2510 Predicted membrane pro 99.2 4.5E-10 9.7E-15 83.3 10.7 134 92-232 4-137 (140)
37 KOG4314 Predicted carbohydrate 99.1 1.7E-10 3.7E-15 91.9 6.9 217 12-235 54-277 (290)
38 PF06800 Sugar_transport: Suga 99.0 2.6E-08 5.7E-13 84.9 16.3 200 18-231 52-268 (269)
39 TIGR00688 rarD rarD protein. T 99.0 1.7E-08 3.7E-13 86.8 14.7 140 91-233 2-141 (256)
40 PRK15430 putative chlorampheni 98.9 4.1E-08 8.9E-13 86.3 15.6 142 86-233 3-144 (296)
41 PF13536 EmrE: Multidrug resis 98.9 2.9E-09 6.4E-14 79.9 5.6 77 10-87 33-110 (113)
42 TIGR03340 phn_DUF6 phosphonate 98.8 2.5E-07 5.5E-12 80.7 15.4 133 93-234 3-135 (281)
43 PF05653 Mg_trans_NIPA: Magnes 98.8 2E-08 4.4E-13 88.0 8.5 66 18-83 57-122 (300)
44 PLN00411 nodulin MtN21 family 98.7 7.2E-07 1.6E-11 80.3 16.0 137 92-234 14-156 (358)
45 COG2510 Predicted membrane pro 98.6 6.1E-08 1.3E-12 72.1 3.8 69 15-83 71-139 (140)
46 PF00892 EamA: EamA-like trans 98.5 9.9E-08 2.1E-12 72.3 4.3 70 12-81 54-124 (126)
47 PRK15051 4-amino-4-deoxy-L-ara 98.5 3E-07 6.5E-12 68.6 6.3 64 19-82 45-108 (111)
48 PRK11689 aromatic amino acid e 98.4 9.7E-06 2.1E-10 71.3 15.0 130 91-234 4-137 (295)
49 COG2962 RarD Predicted permeas 98.4 9.2E-06 2E-10 69.2 13.4 141 89-236 5-146 (293)
50 PRK11272 putative DMT superfam 98.4 2.2E-05 4.7E-10 69.0 16.2 130 93-234 10-141 (292)
51 PRK13499 rhamnose-proton sympo 98.4 7E-05 1.5E-09 66.6 19.1 217 17-235 79-342 (345)
52 TIGR00950 2A78 Carboxylate/Ami 98.3 1.1E-05 2.3E-10 69.4 12.9 119 103-234 1-119 (260)
53 PRK02971 4-amino-4-deoxy-L-ara 98.3 4.5E-05 9.8E-10 58.3 14.0 118 91-234 2-122 (129)
54 PRK11453 O-acetylserine/cystei 98.3 3.6E-05 7.8E-10 67.8 15.5 125 93-234 6-132 (299)
55 PTZ00343 triose or hexose phos 98.3 5.7E-05 1.2E-09 68.0 16.7 128 100-234 58-186 (350)
56 PF13536 EmrE: Multidrug resis 98.2 1.6E-05 3.5E-10 59.5 10.0 62 174-236 47-108 (113)
57 TIGR00817 tpt Tpt phosphate/ph 98.2 0.00015 3.2E-09 64.0 16.2 121 105-233 16-136 (302)
58 TIGR00776 RhaT RhaT L-rhamnose 98.0 6.5E-05 1.4E-09 65.9 11.5 129 92-233 2-135 (290)
59 KOG2922 Uncharacterized conser 97.9 1.9E-05 4.1E-10 68.2 5.8 206 19-232 72-304 (335)
60 PRK02971 4-amino-4-deoxy-L-ara 97.9 3.3E-05 7.2E-10 59.1 6.3 67 18-84 55-123 (129)
61 PF06027 DUF914: Eukaryotic pr 97.9 0.00042 9.1E-09 61.6 13.6 139 91-235 13-152 (334)
62 PRK10452 multidrug efflux syst 97.8 5.1E-05 1.1E-09 57.1 6.2 72 12-83 31-103 (120)
63 PF08449 UAA: UAA transporter 97.8 0.00053 1.2E-08 60.5 13.6 125 104-237 13-139 (303)
64 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00019 4.2E-09 53.4 8.9 57 177-233 52-108 (111)
65 PF04657 DUF606: Protein of un 97.8 0.0016 3.4E-08 50.5 14.1 132 92-231 2-138 (138)
66 COG0697 RhaT Permeases of the 97.8 0.0016 3.4E-08 56.4 15.7 140 90-237 6-146 (292)
67 COG2076 EmrE Membrane transpor 97.6 0.00019 4.1E-09 52.3 6.3 69 14-82 33-102 (106)
68 PRK09541 emrE multidrug efflux 97.6 0.00017 3.6E-09 53.5 6.0 68 16-83 35-103 (110)
69 PRK11431 multidrug efflux syst 97.6 0.00021 4.6E-09 52.5 6.4 69 14-82 32-101 (105)
70 PRK10650 multidrug efflux syst 97.6 0.00025 5.4E-09 52.4 6.4 67 15-81 39-106 (109)
71 PRK10532 threonine and homoser 97.5 0.0067 1.5E-07 53.2 15.1 125 90-232 11-135 (293)
72 PF04142 Nuc_sug_transp: Nucle 97.4 0.00072 1.6E-08 57.7 7.8 76 162-237 17-92 (244)
73 COG3238 Uncharacterized protei 97.3 0.016 3.6E-07 45.1 13.9 138 89-233 3-145 (150)
74 PRK10452 multidrug efflux syst 97.2 0.0038 8.1E-08 47.0 9.1 52 183-234 51-103 (120)
75 COG4975 GlcU Putative glucose 97.1 6.6E-05 1.4E-09 62.5 -1.5 208 12-233 56-284 (288)
76 PF00893 Multi_Drug_Res: Small 97.1 0.0015 3.3E-08 47.0 5.6 57 18-74 36-93 (93)
77 PRK10650 multidrug efflux syst 97.0 0.025 5.5E-07 41.8 11.9 51 183-233 56-107 (109)
78 PF03151 TPT: Triose-phosphate 97.0 0.003 6.4E-08 49.6 7.0 65 17-81 87-151 (153)
79 PRK09541 emrE multidrug efflux 96.9 0.011 2.4E-07 43.8 9.0 53 183-235 51-104 (110)
80 PRK13499 rhamnose-proton sympo 96.9 0.012 2.6E-07 52.6 10.4 141 89-236 5-155 (345)
81 KOG2234 Predicted UDP-galactos 96.8 0.052 1.1E-06 48.0 13.9 140 93-233 17-163 (345)
82 PRK11431 multidrug efflux syst 96.8 0.016 3.4E-07 42.6 9.1 52 183-234 50-102 (105)
83 PF05653 Mg_trans_NIPA: Magnes 96.8 0.0066 1.4E-07 53.4 8.1 119 88-234 4-122 (300)
84 PF10639 UPF0546: Uncharacteri 96.8 0.0032 7E-08 46.7 5.1 65 18-82 48-113 (113)
85 COG2076 EmrE Membrane transpor 96.7 0.017 3.6E-07 42.2 8.5 53 183-235 51-104 (106)
86 PF07857 DUF1632: CEO family ( 96.6 0.0071 1.5E-07 51.6 7.0 132 92-239 1-139 (254)
87 PF06800 Sugar_transport: Suga 96.3 0.056 1.2E-06 46.5 10.4 80 160-239 43-127 (269)
88 KOG4510 Permease of the drug/m 96.2 0.00063 1.4E-08 57.5 -1.5 135 91-237 38-172 (346)
89 COG5006 rhtA Threonine/homoser 95.6 0.019 4.1E-07 48.4 4.6 68 12-79 206-278 (292)
90 TIGR00803 nst UDP-galactose tr 95.4 0.03 6.5E-07 47.0 5.3 67 14-80 155-221 (222)
91 PF00893 Multi_Drug_Res: Small 95.0 0.089 1.9E-06 37.7 5.9 45 181-225 48-93 (93)
92 COG4975 GlcU Putative glucose 94.6 0.017 3.7E-07 48.4 1.5 130 92-235 3-137 (288)
93 KOG1580 UDP-galactose transpor 93.8 0.36 7.8E-06 40.4 7.6 62 176-237 99-160 (337)
94 PF10639 UPF0546: Uncharacteri 93.8 0.5 1.1E-05 35.1 7.6 38 194-231 74-111 (113)
95 KOG2765 Predicted membrane pro 92.0 0.18 3.9E-06 45.0 3.7 77 161-237 158-234 (416)
96 PF04657 DUF606: Protein of un 91.0 0.91 2E-05 35.1 6.4 71 9-80 63-138 (138)
97 PF06379 RhaT: L-rhamnose-prot 90.8 5.2 0.00011 35.6 11.5 26 90-115 6-31 (344)
98 KOG1581 UDP-galactose transpor 90.5 0.19 4.2E-06 43.5 2.4 75 6-80 236-310 (327)
99 PRK02237 hypothetical protein; 89.2 3.1 6.6E-05 30.5 7.3 47 190-236 61-107 (109)
100 PF03348 Serinc: Serine incorp 86.8 9.3 0.0002 35.5 10.9 23 213-235 282-304 (429)
101 PF02694 UPF0060: Uncharacteri 86.7 3.4 7.4E-05 30.1 6.3 47 190-236 59-105 (107)
102 KOG1444 Nucleotide-sugar trans 86.5 22 0.00048 31.3 14.4 135 93-234 14-149 (314)
103 KOG4314 Predicted carbohydrate 84.7 0.39 8.5E-06 39.1 0.8 60 176-235 67-126 (290)
104 KOG1441 Glucose-6-phosphate/ph 83.9 0.9 2E-05 40.2 2.7 107 106-218 32-139 (316)
105 KOG2922 Uncharacterized conser 83.7 0.22 4.8E-06 43.6 -1.1 120 87-234 17-136 (335)
106 PF06379 RhaT: L-rhamnose-prot 83.6 32 0.0007 30.7 18.8 220 14-234 76-340 (344)
107 KOG3912 Predicted integral mem 78.6 38 0.00083 29.5 10.5 57 177-233 101-157 (372)
108 PRK02237 hypothetical protein; 76.7 17 0.00037 26.7 6.8 45 39-83 61-105 (109)
109 PF02694 UPF0060: Uncharacteri 76.3 15 0.00034 26.8 6.5 44 40-83 60-103 (107)
110 COG3169 Uncharacterized protei 75.6 16 0.00035 26.2 6.2 30 53-82 85-114 (116)
111 PF07168 Ureide_permease: Urei 75.0 3.8 8.3E-05 35.8 3.6 133 97-237 2-149 (336)
112 PF05977 MFS_3: Transmembrane 74.1 85 0.0018 30.1 16.4 51 185-235 343-393 (524)
113 PRK13108 prolipoprotein diacyl 73.5 71 0.0015 30.0 11.8 24 214-237 254-277 (460)
114 PF04342 DUF486: Protein of un 72.6 29 0.00062 25.4 7.0 52 30-81 54-106 (108)
115 COG4858 Uncharacterized membra 72.4 14 0.0003 29.9 5.9 54 60-113 156-216 (226)
116 PF05297 Herpes_LMP1: Herpesvi 72.0 1.2 2.7E-05 38.2 0.0 94 33-128 45-143 (381)
117 COG1742 Uncharacterized conser 71.1 31 0.00067 25.1 6.9 41 44-84 65-105 (109)
118 COG5070 VRG4 Nucleotide-sugar 68.2 9.5 0.00021 32.0 4.3 65 13-77 226-290 (309)
119 PLN02776 prenyltransferase 68.0 93 0.002 28.0 16.6 40 177-217 113-152 (341)
120 KOG4831 Unnamed protein [Funct 65.1 5.2 0.00011 29.1 2.0 70 12-82 54-124 (125)
121 PF04342 DUF486: Protein of un 64.0 10 0.00022 27.6 3.3 29 203-231 77-105 (108)
122 COG3169 Uncharacterized protei 61.7 58 0.0013 23.5 6.8 30 203-232 84-113 (116)
123 KOG1442 GDP-fucose transporter 61.2 5.5 0.00012 34.4 1.8 57 176-232 116-172 (347)
124 KOG2766 Predicted membrane pro 61.1 1.2 2.7E-05 37.9 -2.0 70 165-234 81-150 (336)
125 COG4657 RnfA Predicted NADH:ub 61.0 83 0.0018 25.0 8.6 62 54-115 88-156 (193)
126 PRK15432 autoinducer 2 ABC tra 60.4 42 0.00091 30.2 7.4 24 215-238 287-310 (344)
127 PRK01061 Na(+)-translocating N 55.0 1.3E+02 0.0029 25.5 16.0 49 213-266 182-230 (244)
128 COG1742 Uncharacterized conser 54.3 35 0.00076 24.8 4.7 46 190-235 60-105 (109)
129 COG3086 RseC Positive regulato 54.0 35 0.00076 26.5 4.9 28 183-210 69-96 (150)
130 PRK14397 membrane protein; Pro 53.4 1.3E+02 0.0029 25.2 8.7 19 91-109 48-66 (222)
131 COG2116 FocA Formate/nitrite f 53.1 85 0.0018 27.1 7.7 24 161-184 158-181 (265)
132 COG3238 Uncharacterized protei 52.3 37 0.00081 26.6 5.0 64 18-81 76-144 (150)
133 PRK12872 ubiA prenyltransferas 50.9 1.6E+02 0.0035 25.3 12.0 56 164-219 109-164 (285)
134 PF06570 DUF1129: Protein of u 49.1 1.5E+02 0.0032 24.4 9.4 54 60-113 141-201 (206)
135 TIGR00939 2a57 Equilibrative N 44.4 2.7E+02 0.0058 26.0 11.5 16 220-235 180-195 (437)
136 PRK14789 lipoprotein signal pe 44.1 1.8E+02 0.0039 23.8 8.5 18 261-278 168-185 (191)
137 PF05961 Chordopox_A13L: Chord 43.8 40 0.00086 22.4 3.3 22 217-238 5-26 (68)
138 KOG0682 Ammonia permease [Inor 42.2 3.1E+02 0.0067 26.0 10.0 64 53-116 202-284 (500)
139 PF15048 OSTbeta: Organic solu 41.2 46 0.00099 25.1 3.7 25 211-235 29-57 (125)
140 PF07444 Ycf66_N: Ycf66 protei 40.9 36 0.00078 23.8 3.0 25 213-237 4-28 (84)
141 PF04971 Lysis_S: Lysis protei 40.7 29 0.00063 23.1 2.3 24 222-245 42-65 (68)
142 TIGR02865 spore_II_E stage II 38.6 4.4E+02 0.0094 26.7 14.9 44 38-81 11-54 (764)
143 KOG1582 UDP-galactose transpor 38.5 71 0.0015 27.8 4.9 54 33-86 282-335 (367)
144 PF06679 DUF1180: Protein of u 36.6 65 0.0014 25.7 4.2 9 254-262 136-144 (163)
145 PF09656 PGPGW: Putative trans 35.5 1.1E+02 0.0023 19.4 4.2 44 67-115 5-48 (53)
146 PF11085 YqhR: Conserved membr 35.2 1.3E+02 0.0029 24.0 5.7 35 104-143 86-120 (173)
147 PF07857 DUF1632: CEO family ( 35.0 2.9E+02 0.0062 23.8 8.2 98 19-116 63-208 (254)
148 KOG1608 Protein transporter of 34.9 52 0.0011 28.8 3.6 13 104-116 179-191 (374)
149 TIGR00905 2A0302 transporter, 34.6 3.9E+02 0.0084 25.0 13.8 21 217-237 417-437 (473)
150 PF15471 TMEM171: Transmembran 34.6 40 0.00087 29.0 2.8 27 214-240 159-185 (319)
151 cd01324 cbb3_Oxidase_CcoQ Cyto 34.4 38 0.00083 20.9 2.1 23 219-241 16-38 (48)
152 PF10754 DUF2569: Protein of u 34.3 2.2E+02 0.0048 22.0 6.9 28 89-116 119-146 (149)
153 PHA03049 IMV membrane protein; 34.1 64 0.0014 21.3 3.1 20 218-237 6-25 (68)
154 TIGR00806 rfc RFC reduced fola 33.2 4.4E+02 0.0096 25.2 12.1 31 178-208 374-404 (511)
155 KOG1443 Predicted integral mem 32.8 87 0.0019 27.7 4.6 75 163-237 84-159 (349)
156 TIGR00145 FTR1 family protein. 32.1 3.5E+02 0.0075 23.7 10.6 32 49-80 21-54 (283)
157 KOG2822 Sphingoid base-phospha 31.6 1.5E+02 0.0032 27.1 5.9 42 42-84 164-206 (407)
158 PF04246 RseC_MucC: Positive r 31.1 78 0.0017 24.0 3.8 23 188-210 67-89 (135)
159 PF06365 CD34_antigen: CD34/Po 31.1 1.2E+02 0.0025 25.1 5.0 17 222-238 112-128 (202)
160 PF08507 COPI_assoc: COPI asso 30.8 2.4E+02 0.0052 21.4 11.6 36 198-234 70-105 (136)
161 PF15345 TMEM51: Transmembrane 30.2 62 0.0013 27.2 3.2 24 220-243 67-90 (233)
162 PF11446 DUF2897: Protein of u 30.2 61 0.0013 20.7 2.5 14 222-235 8-21 (55)
163 PF12794 MscS_TM: Mechanosensi 29.4 4.2E+02 0.0091 23.8 14.1 10 224-233 236-245 (340)
164 KOG1583 UDP-N-acetylglucosamin 29.4 26 0.00056 30.4 0.9 42 41-82 272-313 (330)
165 PF11044 TMEMspv1-c74-12: Plec 29.1 28 0.00061 20.9 0.8 19 214-232 2-20 (49)
166 KOG4831 Unnamed protein [Funct 28.8 1.3E+02 0.0028 22.1 4.2 38 194-231 85-122 (125)
167 PF05977 MFS_3: Transmembrane 28.3 5.4E+02 0.012 24.7 12.0 81 35-115 251-333 (524)
168 PRK08238 hypothetical protein; 28.1 5.2E+02 0.011 24.5 15.7 21 61-81 196-216 (479)
169 PRK11357 frlA putative fructos 27.9 4.8E+02 0.01 24.0 14.2 20 219-238 418-437 (445)
170 PF00873 ACR_tran: AcrB/AcrD/A 26.4 2.5E+02 0.0054 29.4 7.6 32 201-233 901-932 (1021)
171 COG1971 Predicted membrane pro 26.0 1.1E+02 0.0024 25.0 4.0 41 189-229 41-82 (190)
172 PLN02776 prenyltransferase 25.9 4.9E+02 0.011 23.4 15.1 47 58-105 118-165 (341)
173 PLN02822 serine palmitoyltrans 25.5 50 0.0011 31.2 2.2 61 206-267 26-86 (481)
174 PRK14774 lipoprotein signal pe 25.1 1.4E+02 0.003 24.3 4.4 17 216-233 131-147 (185)
175 PRK10862 SoxR reducing system 25.0 1.4E+02 0.003 23.4 4.3 18 190-207 76-93 (154)
176 PF07123 PsbW: Photosystem II 24.8 66 0.0014 24.7 2.3 30 87-116 102-131 (138)
177 PF13038 DUF3899: Domain of un 24.6 1E+02 0.0023 21.5 3.3 21 215-235 3-23 (92)
178 PF05545 FixQ: Cbb3-type cytoc 24.1 85 0.0018 19.2 2.4 19 220-238 16-34 (49)
179 PRK06638 NADH:ubiquinone oxido 23.5 4.1E+02 0.0089 21.7 12.7 34 203-236 133-166 (198)
180 PRK09776 putative diguanylate 23.0 8.7E+02 0.019 25.3 13.0 23 92-114 71-93 (1092)
181 PF03547 Mem_trans: Membrane t 22.4 2.3E+02 0.0049 25.5 5.9 9 199-207 112-120 (385)
182 COG5336 Uncharacterized protei 22.4 3.3E+02 0.0071 20.1 6.1 35 199-233 56-91 (116)
183 PF15102 TMEM154: TMEM154 prot 22.0 76 0.0017 24.7 2.2 20 220-239 67-86 (146)
184 PRK12324 phosphoribose diphosp 22.0 5.5E+02 0.012 22.6 16.5 19 63-81 18-36 (295)
185 TIGR00892 2A0113 monocarboxyla 21.9 6.3E+02 0.014 23.3 11.5 12 219-230 404-415 (455)
186 PF09930 DUF2162: Predicted tr 21.8 4.9E+02 0.011 21.9 13.5 47 7-53 27-73 (224)
187 KOG2592 Tumor differentially e 21.1 1.8E+02 0.0039 26.7 4.6 20 213-233 295-314 (426)
188 PRK15049 L-asparagine permease 21.0 4.8E+02 0.01 24.7 7.9 15 7-21 349-363 (499)
189 KOG2568 Predicted membrane pro 20.7 7.6E+02 0.016 23.7 18.3 25 219-243 425-449 (518)
190 PRK10614 multidrug efflux syst 20.6 3.4E+02 0.0074 28.5 7.3 32 201-233 889-920 (1025)
191 PRK14417 membrane protein; Pro 20.5 4.1E+02 0.0089 22.5 6.4 24 262-285 207-230 (232)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=5.3e-30 Score=225.88 Aligned_cols=228 Identities=18% Similarity=0.228 Sum_probs=187.1
Q ss_pred CchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccc
Q 023136 10 DPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN 89 (287)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~ 89 (287)
+++++++.|++++.+..+.|.+++|++++.++++++++|+++++++++++|||++++++.+++++++|+.+...++.+.+
T Consensus 64 ~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~ 143 (302)
T TIGR00817 64 LLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFN 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCccccc
Confidence 45778889999999999999999999999999999999999999999999999999999999999999998766666677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccc-ccc--ccch-hHHHHH
Q 023136 90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNV-FAF--KYTP-YVLFFI 165 (287)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~--~~~~-~~~~~~ 165 (287)
..|++++++++++|+++.++.||..++.+.++.++..|++..+.+.+++.....++....... ... .... ..+...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 889999999999999999999998874456999999999999998888776655432111100 000 0111 122223
Q ss_pred HHHHH-HHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 166 VLSCL-ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 166 ~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
+..+. .....+...+..+++++|.++++..+++|++++++|++++||++++.+++|.+++++|+.+|++.|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 33333 2333455667789999999999999999999999999999999999999999999999999987543
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=4.8e-28 Score=216.95 Aligned_cols=226 Identities=21% Similarity=0.274 Sum_probs=191.7
Q ss_pred CchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccc
Q 023136 10 DPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN 89 (287)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~ 89 (287)
++++++|.|+++.......+.|+++++++++++++++.|+++++++++++|||++++++++++++++|+++++.+|.+.+
T Consensus 113 ~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~ 192 (350)
T PTZ00343 113 FLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFT 192 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhH
Confidence 35678999999987788888999999999999999999999999999999999999999999999999999988888888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCHHHHHHHHhHHHHHHHHHHHHhhcccc--CCc----cccccccc
Q 023136 90 VLGSVLSLLAVLTTCVAQIMTNTIQKKF-----KVSSTQLLYQSCPYQALTLFIIGPFLDGLL--TNK----NVFAFKYT 158 (287)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~----~~~~~~~~ 158 (287)
..|++++++|++++++++++.|+.+++. +.++.+...+..+.+.+.+++..+..|... ... ........
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 8999999999999999999999998753 256777777778888888888776554321 000 00011111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
...+..++.+++..+.+|...+..+++++|.++++.++++|++++++|++++||++++.+++|.++++.|+++|++.
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 23445566677777788888899999999999999999999999999999999999999999999999999999864
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.95 E-value=4.1e-28 Score=210.30 Aligned_cols=237 Identities=30% Similarity=0.512 Sum_probs=205.8
Q ss_pred ccCCCCC----CCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhh
Q 023136 2 KLFEHKP----FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVG 77 (287)
Q Consensus 2 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G 77 (287)
|+.++++ .+++.++|+++.++++..+.|.++.|++++++++++.++|+++.++++++.+|++++..+++++.++.|
T Consensus 70 ~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~G 149 (316)
T KOG1441|consen 70 KLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFG 149 (316)
T ss_pred cCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeee
Confidence 4555555 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeeecCCccchHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCHHHHHHHHhHHHHHHHH-HHHHhhccccCCccccc
Q 023136 78 VGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQK--KFKVSSTQLLYQSCPYQALTLF-IIGPFLDGLLTNKNVFA 154 (287)
Q Consensus 78 ~~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~ 154 (287)
+.+...+|.+++..|.+.++++.+..++++++.++..+ ++++|+.+++.|+.+++...++ +.....++... .....
T Consensus 150 V~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~ 228 (316)
T KOG1441|consen 150 VAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLT 228 (316)
T ss_pred EEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeec
Confidence 99999999999999999999999999999999999994 6788999999999999998888 44333332211 00011
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
..++...+. .++..++++.+|...|..+.++||++.++.+.+|.++.++.|+++|+++.++.+.+|.++.++|+.+|++
T Consensus 229 ~~~~~~~~~-~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 229 APWFVTFLI-LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred cccchhhHH-HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 233334443 4444499999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcchh
Q 023136 235 CCSLES 240 (287)
Q Consensus 235 ~~~~~~ 240 (287)
.|.+++
T Consensus 308 ~k~~~~ 313 (316)
T KOG1441|consen 308 AKLKEK 313 (316)
T ss_pred Hhhhhh
Confidence 766553
No 4
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=7.7e-27 Score=204.81 Aligned_cols=231 Identities=20% Similarity=0.256 Sum_probs=192.4
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 3 LFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
+.+..+.+|.+++.+++++..+.++.+.|++|++.+.++++.++..+++++++++++|+|+++.|++|++++++|+.++.
T Consensus 71 ~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 71 WLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred chhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 33445677888999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ecCC---------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccc
Q 023136 83 VTDL---------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVF 153 (287)
Q Consensus 83 ~~~~---------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 153 (287)
..|. +....|++++++++++||+++++.|+..++. ++.+...+..+++.++..+...+.|.. ...
T Consensus 151 ~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~ile~~----~i~ 224 (334)
T PF06027_consen 151 VSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAILERS----GIE 224 (334)
T ss_pred eecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHheehh----hhh
Confidence 6431 2347899999999999999999999999964 889999999999998887776666532 122
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 154 AFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
...|+...+.+++..++.-+..+...-..++..+|+...+-.....+.+++++++++|+++++..++|.++|++|.++|+
T Consensus 225 ~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 225 SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 33455555555555555444445555556899999988888888899999999999999999999999999999999998
Q ss_pred Hhhcch
Q 023136 234 YCCSLE 239 (287)
Q Consensus 234 ~~~~~~ 239 (287)
..+.+.
T Consensus 305 ~~~~~~ 310 (334)
T PF06027_consen 305 LAESPE 310 (334)
T ss_pred ccCCcc
Confidence 765433
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=9.6e-26 Score=201.65 Aligned_cols=219 Identities=13% Similarity=0.236 Sum_probs=165.2
Q ss_pred HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHh------cceecchhhHHHHHHHhhhheeeeec-CC---
Q 023136 17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLF------FRKKFSRNIQLSLVILLVGVGIATVT-DL--- 86 (287)
Q Consensus 17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~------~~e~~~~~~~~~~~l~~~G~~l~~~~-~~--- 86 (287)
.+++......+.+.+++|++++.+.++.+++|++++++++++ +|||+++++++|++++++|+.++... +.
T Consensus 84 ~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~ 163 (358)
T PLN00411 84 LGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVF 163 (358)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 344444455678899999999999999999999999999999 69999999999999999999976531 10
Q ss_pred --------------------ccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhcc
Q 023136 87 --------------------QLN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG 145 (287)
Q Consensus 87 --------------------~~~-~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (287)
..+ ..|.++.++++++||+|++++|+..++++ +.....+++..++.+.+.+.....+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~ 242 (358)
T PLN00411 164 VASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEK 242 (358)
T ss_pred cccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 112 45999999999999999999999988652 33456667766666655554444432
Q ss_pred ccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 023136 146 LLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA 225 (287)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~li 225 (287)
... ......++...+. ++..++........+++++++.+|.+++++.+++|++++++|++++||++++.+++|+++|
T Consensus 243 ~~~--~~~~~~~~~~~~~-i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI 319 (358)
T PLN00411 243 NNP--SVWIIHFDITLIT-IVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILI 319 (358)
T ss_pred CCc--ccceeccchHHHH-HHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 111 0111122222222 3333333434556677789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcch
Q 023136 226 VIGMVLYSYCCSLE 239 (287)
Q Consensus 226 l~g~~~~~~~~~~~ 239 (287)
++|+.+.++.++++
T Consensus 320 l~Gv~l~~~~~~~~ 333 (358)
T PLN00411 320 TLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHHhhhhhh
Confidence 99999987654433
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.95 E-value=1.2e-25 Score=198.01 Aligned_cols=233 Identities=22% Similarity=0.322 Sum_probs=201.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec
Q 023136 5 EHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT 84 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~ 84 (287)
++++.|++++++.++++.++..+.|.+++|+|.+..++++++.|+++++++.+++|||++++++++++++++|+++....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~ 137 (303)
T PF08449_consen 58 KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS 137 (303)
T ss_pred CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred CCc----c------chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHh--hccccCCccc
Q 023136 85 DLQ----L------NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPF--LDGLLTNKNV 152 (287)
Q Consensus 85 ~~~----~------~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~ 152 (287)
|.. . ...|+++.+++.++.|+..+++||..++++.++.++++|.+.++.+..++.... .+...+....
T Consensus 138 ~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f 217 (303)
T PF08449_consen 138 DSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRF 217 (303)
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHH
Confidence 421 1 123999999999999999999999999999999999999999999888777666 2222111111
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 153 FAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
....+..+..++..++.++..+...+..+++.+|++.++..++|.++++++|+++||+++++.+++|.++++.|..+|
T Consensus 218 --~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 218 --ISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred --HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 112334666777888888888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcch
Q 023136 233 SYCCSLE 239 (287)
Q Consensus 233 ~~~~~~~ 239 (287)
.+.++++
T Consensus 296 ~~~~~k~ 302 (303)
T PF08449_consen 296 SYAKKKK 302 (303)
T ss_pred HHhhccC
Confidence 9876644
No 7
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.3e-24 Score=183.21 Aligned_cols=242 Identities=24% Similarity=0.326 Sum_probs=213.1
Q ss_pred CccCCCCCCCc---hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhh
Q 023136 1 MKLFEHKPFDP---RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVG 77 (287)
Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G 77 (287)
+|+++.+++++ |+|+|.++++.++.+....+++|++++.++++++..|+++++.+.+++|.|+++..|.++..+.+|
T Consensus 64 ~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~ 143 (314)
T KOG1444|consen 64 LGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIG 143 (314)
T ss_pred hceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHH
Confidence 57888887775 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeeeecCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccccccc
Q 023136 78 VGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKY 157 (287)
Q Consensus 78 ~~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (287)
......+|..++..|+.|++...++.+.+.++.|+..+..+.+.+.+++|+++.+.+.+.+...+.+.+.......+-..
T Consensus 144 s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~ 223 (314)
T KOG1444|consen 144 SVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS 223 (314)
T ss_pred HHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc
Confidence 99999999999999999999999999999999999998777899999999999999888887777665431111112233
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 158 TPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
+...+..+.++|+++++.+++.+++.+..|+++.++++......+.+...+++|+++++..++|..+-+.|.++|++.+.
T Consensus 224 ~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~ 303 (314)
T KOG1444|consen 224 DSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATF 303 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhh
Confidence 45678899999999999999999999999999999999666666666666677779999999999999999999999877
Q ss_pred chhhh
Q 023136 238 LESQQ 242 (287)
Q Consensus 238 ~~~~~ 242 (287)
++++.
T Consensus 304 ~~k~~ 308 (314)
T KOG1444|consen 304 RKKKQ 308 (314)
T ss_pred hhccC
Confidence 66443
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=2.1e-23 Score=183.18 Aligned_cols=214 Identities=19% Similarity=0.118 Sum_probs=159.2
Q ss_pred chhHHHHHHHHHHHHhhhccccc----ccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC
Q 023136 11 PRAVMGFGVLNGISIGLLNLSLG----FNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL 86 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~al~----~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~ 86 (287)
++..+..++.+.....+.+.+++ +.++..+.++.++.|+++.+++++++|||++++++++++++++|+.++..++.
T Consensus 61 ~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~ 140 (295)
T PRK11689 61 KRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDN 140 (295)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCc
Confidence 33344445555566667776665 46778889999999999999999999999999999999999999998875432
Q ss_pred c-----------cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccccc
Q 023136 87 Q-----------LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAF 155 (287)
Q Consensus 87 ~-----------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 155 (287)
+ .+..|++++++++++||.+.++.||..++. ++..... ..+.+.+.+.....+.. . .
T Consensus 141 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~~---~~~~~~l~~~~~~~~~~-----~--~ 208 (295)
T PRK11689 141 GLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLFF---ILTALALWIKYFLSPQP-----A--M 208 (295)
T ss_pred cchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHHH---HHHHHHHHHHHHHhcCc-----c--c
Confidence 1 234699999999999999999999987643 5554422 22233332222221111 1 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 156 KYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
..+...+..++..++.+...++..++.+++.+|.+.+.+.+++|+++++++++++||++++.+++|+++|+.|+.+....
T Consensus 209 ~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~ 288 (295)
T PRK11689 209 VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLA 288 (295)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhh
Confidence 12233344444455555555777778899999999999999999999999999999999999999999999999887654
Q ss_pred h
Q 023136 236 C 236 (287)
Q Consensus 236 ~ 236 (287)
+
T Consensus 289 ~ 289 (295)
T PRK11689 289 T 289 (295)
T ss_pred H
Confidence 3
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=3.1e-23 Score=182.52 Aligned_cols=230 Identities=16% Similarity=0.226 Sum_probs=166.4
Q ss_pred CCCCchhHHHHHHHHH-HHHhhhcccccc-cchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec
Q 023136 7 KPFDPRAVMGFGVLNG-ISIGLLNLSLGF-NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT 84 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~~~~~~~~al~~-~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~ 84 (287)
++.+++..+..+++.. ....+.+.+++| .+++.+.++.++.|+++.+++++++|||++++++++++++++|+.++..+
T Consensus 54 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 54 PKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 4445555555566433 444566778887 68899999999999999999999999999999999999999999988754
Q ss_pred C---CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136 85 D---LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFK-VSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY 160 (287)
Q Consensus 85 ~---~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+ .+.+..|+++++.++++|+.+.++.||..++.+ ........+....+.+.+.......++..... .....++..
T Consensus 134 ~~~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 212 (299)
T PRK11453 134 SLNGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMT 212 (299)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHH
Confidence 2 223457999999999999999999999876432 22334445554444443333333333211100 000123334
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 161 VLFFIVLSCLISVSVNF-STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
.+..++..++++....+ ..++.+++.++.+.+.+.+++|+++.+++++++||++++.+++|++++++|+.+..+.++
T Consensus 213 ~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 213 TILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 45555555555554444 444568999999999999999999999999999999999999999999999998766543
No 10
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=4.7e-23 Score=177.67 Aligned_cols=212 Identities=17% Similarity=0.126 Sum_probs=166.8
Q ss_pred CchhHHHHHH-HHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC-Cc
Q 023136 10 DPRAVMGFGV-LNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-LQ 87 (287)
Q Consensus 10 ~~~~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~-~~ 87 (287)
++++.+..+. ...++..+.+.|++|++++.++++.++.|+++++++.+++|||++++++.+++++++|+.++..++ .+
T Consensus 45 ~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~ 124 (260)
T TIGR00950 45 RLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLS 124 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCccc
Confidence 3344445544 467888999999999999999999999999999999999999999999999999999999876543 44
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136 88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 167 (287)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
.+..|++++++++++|+.+.++.|+..++.+.++.....+....+.+++.+.....++.. . .+...+...+.
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~--~~~~~~~~~~~ 196 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP------Q--ALSLQWGALLY 196 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC------C--cchHHHHHHHH
Confidence 567899999999999999999999998865434555555666677766665544332111 1 12223333444
Q ss_pred HHHHHH-HHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHH
Q 023136 168 SCLISV-SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGM 229 (287)
Q Consensus 168 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~ 229 (287)
.++++. ..+...++++++.++.+.+.+.+++|+++.+++++++||++++.+++|..+++.|+
T Consensus 197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 197 LGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 444433 34556677799999999999999999999999999999999999999999999986
No 11
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.90 E-value=2.1e-22 Score=176.99 Aligned_cols=209 Identities=11% Similarity=0.104 Sum_probs=155.4
Q ss_pred HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchHHHHHHH
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSL 97 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~l~l 97 (287)
++..+.++.+.+.++++++++.+.++.++.|+++++++++++|||+++++|++++++++|+.++..++.+. ..+++
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l 155 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIAL 155 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999876433222 24688
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHH
Q 023136 98 LAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNF 177 (287)
Q Consensus 98 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (287)
+++++||.|.++.|+..++...+......|..+.+.+.... ..... ...... .....+...+..++.+...+.
T Consensus 156 ~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~-~~~~~~~~~~~~g~~t~i~~~ 228 (296)
T PRK15430 156 GLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFA---IADSS---TSHMGQ-NPMSLNLLLIAAGIVTTVPLL 228 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHH---HccCC---cccccC-CcHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999875432223333334444343333211 11100 000111 111122333334444555577
Q ss_pred HHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 178 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 178 ~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
+.+..+++.+|.+.+.+.+++|+++.+++++++||++++.+++|+++|++|+.+......
T Consensus 229 ~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 229 CFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999988775543
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.90 E-value=5.6e-22 Score=173.93 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=162.4
Q ss_pred HHHHHHHH-HHHHhhhcccc-cccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec-CCccch
Q 023136 14 VMGFGVLN-GISIGLLNLSL-GFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT-DLQLNV 90 (287)
Q Consensus 14 ~~~~~~~~-~~~~~~~~~al-~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~-~~~~~~ 90 (287)
....+.+. ..+..+.+.+. ++++++.+.++.++.|+++++++.+ +|||+++++++|++++++|+.++..+ +.+.+.
T Consensus 71 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~ 149 (292)
T PRK11272 71 AALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNP 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccch
Confidence 33345443 35567778888 9999999999999999999999985 69999999999999999999987643 334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 170 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.|++++++++++||.+.+..||..++ ++.....++...+.+.+.+.....+.... ...+...+..++..++
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~l~i 220 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT------ALPTLSGFLALGYLAV 220 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc------ccCCHHHHHHHHHHHH
Confidence 79999999999999999999997653 23445567777777666555443321110 1112223333344444
Q ss_pred HHH-HHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 171 ISV-SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 171 ~~~-~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
++. ......+..+++.++.+.+++.+++|+++.+++++++||++++.+++|+++++.|+++.++.++
T Consensus 221 ~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 221 FGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 433 3345666779999999999999999999999999999999999999999999999998876433
No 13
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.89 E-value=3.7e-21 Score=168.84 Aligned_cols=209 Identities=13% Similarity=0.136 Sum_probs=155.3
Q ss_pred chhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec--C-Cc
Q 023136 11 PRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT--D-LQ 87 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~--~-~~ 87 (287)
+++.+..+.+.+....+.+++++|+|++.++++.++.|+++++++. ||+++ +.++.++++|+.++... + .+
T Consensus 71 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~~~~~~~~ 144 (293)
T PRK10532 71 RLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLPLGQDVSH 144 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeeecCCCccc
Confidence 3445566777788888889999999999999999999999998763 55554 44567788999876632 2 23
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136 88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 167 (287)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
.+..|++++++++++|+.+.++.||..+++ ++... .+....+.+++.+.....+. ...++...+...+.
T Consensus 145 ~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~l~ 213 (293)
T PRK10532 145 VDLTGAALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAG--------EALWHWSILPLGLA 213 (293)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccC--------cccCCHHHHHHHHH
Confidence 356799999999999999999999997744 66655 45555566555544432221 01122222323334
Q ss_pred HHHHHHHH-HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136 168 SCLISVSV-NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 236 (287)
Q Consensus 168 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~ 236 (287)
.++++... ....++.+++.++.+++++.+++|+++.++|++++||++++.+++|+++++.|++.+.+..
T Consensus 214 lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 214 VAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 44444333 4455677999999999999999999999999999999999999999999999999987543
No 14
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.87 E-value=2.7e-21 Score=168.77 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=151.5
Q ss_pred HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC-ccchHHHHHH
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL-QLNVLGSVLS 96 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~-~~~~~G~~l~ 96 (287)
++....+..+.+.++++.+++.+..+.++.|+++++++++++|||+++++|+|+.++++|+.++..++. +.+..|+.++
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~ 149 (281)
T TIGR03340 70 AVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWA 149 (281)
T ss_pred HHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHH
Confidence 445668888999999999999999999999999999999999999999999999999999997765332 3455788899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHH----HHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136 97 LLAVLTTCVAQIMTNTIQKKFKVSSTQ----LLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 172 (287)
Q Consensus 97 l~s~~~~a~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (287)
+.++++|+.|.+..|+..++. ++.. ...+......+.+.+.....+.. ... ..+...+......++.+
T Consensus 150 l~aal~~a~~~i~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~s 221 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAALGV--PAFYSALGYLGIGFLAMGWPFLLLYLKRHGR----SMF--PYARQILPSATLGGLMI 221 (281)
T ss_pred HHHHHHHHHhhhhccccccch--hcccccHHHHHHHHHHHHHHHHHHHHHHhcc----chh--hhHHHHHHHHHHHHHHH
Confidence 999999999999888865432 2221 22222111111111111111110 000 11122233344444444
Q ss_pred HHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 023136 173 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL 231 (287)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~ 231 (287)
...+...+..+++.++...+...+++|+++.++|++++||+++..+++|++++++|+.+
T Consensus 222 ~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 222 GGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 44566777789999999999999999999999999999999999999999999999875
No 15
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.85 E-value=1.6e-20 Score=157.85 Aligned_cols=221 Identities=25% Similarity=0.407 Sum_probs=196.4
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchH
Q 023136 12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVL 91 (287)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~ 91 (287)
|+..|.++..+...++.|.+++|++.+.+++.+++.++|+.+++.++.=||+++.-..-++++.+|+.+.+..+.+++..
T Consensus 85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~ 164 (349)
T KOG1443|consen 85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE 164 (349)
T ss_pred HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence 45559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC---CCHHHHHHHHhHHHHHHHHHHHHhhccccCC--ccccc-ccc--chhHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKKFK---VSSTQLLYQSCPYQALTLFIIGPFLDGLLTN--KNVFA-FKY--TPYVLF 163 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~-~~~--~~~~~~ 163 (287)
|..+..+++++.++...+.|+++++.+ -+|.+++++..+...+.+++.....|+.... ...+. ... ....+.
T Consensus 165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g 244 (349)
T KOG1443|consen 165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIG 244 (349)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHH
Confidence 999999999999999999999998644 3899999999999999999988888874322 11111 111 234556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 164 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
.+..++..++.+...-+..+.+++..+.++.+-.+-+.+.+++.++.+|+++..++.|..+...|+..+
T Consensus 245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 777888888888999999999999999999999999999999999999999999999999999999998
No 16
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.5e-22 Score=165.21 Aligned_cols=233 Identities=18% Similarity=0.205 Sum_probs=206.7
Q ss_pred chhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC---Cc
Q 023136 11 PRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD---LQ 87 (287)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~---~~ 87 (287)
-++++|+++.+.++..+.|++++|++++++.+=+++.-+|+++++++++|+|-+..-..+.++++.|..+=...| ..
T Consensus 102 ~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ 181 (347)
T KOG1442|consen 102 ARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGT 181 (347)
T ss_pred HHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCc
Confidence 388999999999999999999999999999999999999999999999999999999999999999998777644 34
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136 88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 167 (287)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
..+.|.++++.++++-|+..++.|+...+.+-.-+.+.+|+++.+.+..++...+.+ ..+....++..+...+|....+
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng-e~~~v~~~~~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG-EFQAVVGFPHLPAIKFWILMTL 260 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc-hHHHHcCcccchHHHHHHHHHH
Confidence 578999999999999999999999888766667889999999999888777655543 2232333445667789999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhcchhhhcc
Q 023136 168 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKA 244 (287)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~~~~~~~~ 244 (287)
+++.++.+++...+.++.+||+++.+-++-+.....+++..+++|.-+..-|-+-+++++|...|++.|.++.+++.
T Consensus 261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877765544
No 17
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.83 E-value=5.3e-20 Score=148.15 Aligned_cols=239 Identities=18% Similarity=0.231 Sum_probs=209.5
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136 2 KLFEHKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~ 81 (287)
|+++.+..+.|+|+|.+++.....+....+++|++++.+++++++.++.++....+++|.|.+-....+.++++..-...
T Consensus 59 ~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va 138 (309)
T COG5070 59 RLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVA 138 (309)
T ss_pred hHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHh
Confidence 56677777789999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eecCCccc-------hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccc
Q 023136 82 TVTDLQLN-------VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFA 154 (287)
Q Consensus 82 ~~~~~~~~-------~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (287)
.++|.+.. -.|++|.+..++..+.+....|+..+-.+....+.++|+++.+..+++.+....|.|.+..-...
T Consensus 139 ~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~ann 218 (309)
T COG5070 139 TWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN 218 (309)
T ss_pred ccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC
Confidence 88776321 25999999999999999999999887555677889999999999999999998887755432222
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
.....+...+++++.+++..++.-|+++.+++++.++.+.+......+.|.++|||+.+...+..+.+-..+..+|..
T Consensus 219 --l~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 219 --LSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred --CChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 223346678899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcchhhh
Q 023136 235 CCSLESQQ 242 (287)
Q Consensus 235 ~~~~~~~~ 242 (287)
.+.+++++
T Consensus 297 aks~k~q~ 304 (309)
T COG5070 297 AKSKKQQN 304 (309)
T ss_pred HHHHHHhc
Confidence 77654443
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=1.1e-17 Score=145.84 Aligned_cols=207 Identities=19% Similarity=0.225 Sum_probs=160.8
Q ss_pred HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHH-HhcceecchhhHHHHHHHhhhheeeeecCCccc---hHH
Q 023136 17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLET-LFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN---VLG 92 (287)
Q Consensus 17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~-l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~---~~G 92 (287)
.++.+.....+.+.++++++++.++++.++.|+++.++++ +++|||++++++.++.++++|+.++..++...+ ..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g 155 (292)
T COG0697 76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLG 155 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHH
Confidence 3555678889999999999999999999999999999997 777999999999999999999999988665443 589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH-HHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLY-QSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
+.+++.++++++.+.+..|+.. + .++..... +... ...++.......... .......+......+++
T Consensus 156 ~~~~l~a~~~~a~~~~~~~~~~-~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~ 223 (292)
T COG0697 156 LLLALAAALLWALYTALVKRLS-R--LGPVTLALLLQLL--LALLLLLLFFLSGFG-------APILSRAWLLLLYLGVF 223 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-C--CChHHHHHHHHHH--HHHHHHHHHHhcccc-------ccCCHHHHHHHHHHHHH
Confidence 9999999999999999999987 3 35555555 3332 112222122121110 11222333444444444
Q ss_pred HHH-HHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 172 SVS-VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
+.. .....+...++.++...+...+++|+.+.+++++++||+++..+++|+++++.|+.+....
T Consensus 224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 224 STGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 443 5666777899999999999999999999999999999999999999999999999998754
No 19
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.81 E-value=3e-19 Score=144.96 Aligned_cols=224 Identities=15% Similarity=0.222 Sum_probs=184.3
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC-
Q 023136 8 PFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL- 86 (287)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~- 86 (287)
+-+-+.+...++.+.+.+...|-++||+|.++..+-+++-|+-+++++.++.++++.|+++.+++++++|+++....+.
T Consensus 82 ~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 82 NTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred CCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 3445778888999999999999999999999999999999999999999999999999999999999999998876321
Q ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136 87 ------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY 160 (287)
Q Consensus 87 ------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+....|.++.+.|-.+.++....++++.+.+.-+..+++.|.++++.+.+....++.+..-. ...+. .-.+.
T Consensus 162 v~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElwe-F~yF~-~RhP~ 239 (337)
T KOG1580|consen 162 VGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWE-FFYFV-QRHPY 239 (337)
T ss_pred cCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHH-HHHHH-HhccH
Confidence 22357999999999999999999999998777788899999999999887665554432100 00011 11123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
.++-+...++.+..-+++.|..+...+|.+.|++.+.+..++++.|+++|+++++.+||+|..+++.|...=.
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 3344444445555559999999999999999999999999999999999999999999999999999887644
No 20
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.80 E-value=1.8e-18 Score=149.31 Aligned_cols=228 Identities=17% Similarity=0.152 Sum_probs=179.3
Q ss_pred CCCCchhHHHHHHHHHHH----HhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 7 KPFDPRAVMGFGVLNGIS----IGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
++...++..-.++.++.- .++.|.++.|++++..+++.+++-+||..++.++..||+++.|.+++.+.++|++++.
T Consensus 151 ~~~t~~~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt 230 (416)
T KOG2765|consen 151 GKLTATQTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVT 230 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEE
Confidence 344456777777777644 4556679999999999999999999999999999999999999999999999999999
Q ss_pred ecCC--------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccc
Q 023136 83 VTDL--------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKF--KVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNV 152 (287)
Q Consensus 83 ~~~~--------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 152 (287)
.+|. +....|.++++.+++.||+|.++.||-..++ ++|...+..|..++..+.+.+...+++.. ..+.
T Consensus 231 ~~~s~~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~--~~e~ 308 (416)
T KOG2765|consen 231 MGDSKQNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFF--GEER 308 (416)
T ss_pred eccccccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHh--ccCc
Confidence 8643 2337899999999999999999999988765 56777677776666665555444444322 2223
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 153 FAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
++......+-..++.+.+..++..+.+.++.-.++|.+..+-..++.+++++.+.++-|.++++.+++|.+.|++|.++.
T Consensus 309 F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~v 388 (416)
T KOG2765|consen 309 FELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIV 388 (416)
T ss_pred ccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhe
Confidence 33333333333344444444455888888899999999999999999999999999999999999999999999999998
Q ss_pred HHhh
Q 023136 233 SYCC 236 (287)
Q Consensus 233 ~~~~ 236 (287)
++..
T Consensus 389 n~~~ 392 (416)
T KOG2765|consen 389 NISS 392 (416)
T ss_pred eccc
Confidence 7653
No 21
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1e-17 Score=141.10 Aligned_cols=230 Identities=19% Similarity=0.180 Sum_probs=194.0
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC-
Q 023136 7 KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD- 85 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~- 85 (287)
.+.|+.++.-++.....+..|++-+++|++-++..+.+++--+-+++.+.++.|+|++..+++...++..|+.+....+
T Consensus 79 ~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~ 158 (327)
T KOG1581|consen 79 GVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPN 158 (327)
T ss_pred CCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecC
Confidence 3567788888999999999999999999999999999999999999999999999999999999999999999887531
Q ss_pred -C-------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCcccccccc
Q 023136 86 -L-------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKY 157 (287)
Q Consensus 86 -~-------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (287)
. +..++|+.+....-++.++.+..++++.+++++++++++++.++++++.-.......+.+.+. ..-...
T Consensus 159 s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~a--v~F~~~ 236 (327)
T KOG1581|consen 159 SDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPA--VSFIKE 236 (327)
T ss_pred CCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchH--HHHHHc
Confidence 1 245789999999999999999999999999999999999999999987776664333322211 111122
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 158 TPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
.+..+.=++..++++..-+...|..+++.+|++...+.+.|.+++++++.+.+|.++++.|+.|..+++.|+.+-.+.+.
T Consensus 237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~ 316 (327)
T KOG1581|consen 237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK 316 (327)
T ss_pred ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence 34455556666666666799999999999999999999999999999999999999999999999888888887666554
Q ss_pred c
Q 023136 238 L 238 (287)
Q Consensus 238 ~ 238 (287)
+
T Consensus 317 ~ 317 (327)
T KOG1581|consen 317 K 317 (327)
T ss_pred h
Confidence 4
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.79 E-value=7.7e-18 Score=143.08 Aligned_cols=209 Identities=20% Similarity=0.217 Sum_probs=167.3
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC-----
Q 023136 12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL----- 86 (287)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~----- 86 (287)
.++..-+++|..+..+.+.++++++++.+++++++..++|++++++++|+|++++||.++++.++|+.++..++.
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~ 97 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence 445556889999999999999999999999999999999999999999999999999999999999999865211
Q ss_pred ------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccc
Q 023136 87 ------------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFA 154 (287)
Q Consensus 87 ------------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (287)
.....|+++.++++++.++..++.||.+|+.+.+.+....+...++.++.++.....++.......+-
T Consensus 98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f 177 (244)
T PF04142_consen 98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFF 177 (244)
T ss_pred ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCch
Confidence 11358999999999999999999999999876676666666666777776665444443222222233
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHH
Q 023136 155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILI 224 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~l 224 (287)
..++...|..++..++.+ +..-..+|+.+.+.-+....+..+++.+.++++||.++|....+|..+
T Consensus 178 ~G~~~~~~~~i~~~a~gG----llva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 178 HGYSWWVWIVIFLQAIGG----LLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred hhcchHHHHHHHHHHHhh----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 445555555555555554 445555899999999999999999999999999999999999999764
No 23
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.78 E-value=1e-17 Score=139.33 Aligned_cols=229 Identities=20% Similarity=0.285 Sum_probs=182.7
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC--
Q 023136 8 PFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-- 85 (287)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~-- 85 (287)
++..+.+++-++++..+..+.|.|+.+++++.+|+++....+|+.+++..+++++++.+||+|+....+|+.++...|
T Consensus 83 pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~ 162 (372)
T KOG3912|consen 83 PFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVH 162 (372)
T ss_pred CCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecc
Confidence 344555777899999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred --------CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCC----cccc
Q 023136 86 --------LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTN----KNVF 153 (287)
Q Consensus 86 --------~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~ 153 (287)
.+.-..|+.+.+++-+..|..++..+|..++.+++|.+...|..++|.+.+-++.......+.. -+..
T Consensus 163 ~~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~ 242 (372)
T KOG3912|consen 163 LVTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPR 242 (372)
T ss_pred cccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCC
Confidence 1233579999999999999999999999999999999999999999976554333322111110 0000
Q ss_pred -----------ccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhH
Q 023136 154 -----------AFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGI 222 (287)
Q Consensus 154 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~ 222 (287)
.....+..........+...+.|+......+..|+++-++...+|..+..+++..+.+|.++..|+.|.
T Consensus 243 g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGF 322 (372)
T KOG3912|consen 243 GVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGF 322 (372)
T ss_pred cchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 011112222333333333335677777778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 023136 223 LIAVIGMVLYSYCC 236 (287)
Q Consensus 223 ~lil~g~~~~~~~~ 236 (287)
++.+.|.++|+-..
T Consensus 323 liLi~Gi~lY~~il 336 (372)
T KOG3912|consen 323 LILIMGIILYNQIL 336 (372)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997543
No 24
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1.8e-18 Score=143.50 Aligned_cols=232 Identities=16% Similarity=0.235 Sum_probs=194.5
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccccc-cchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec-
Q 023136 7 KPFDPRAVMGFGVLNGISIGLLNLSLGF-NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT- 84 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~- 84 (287)
++.|.|.+.....++.....++|+++++ ++.+...++++..++-++..+++++|+|++.+|+.++++..+|++++...
T Consensus 60 ~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s 139 (330)
T KOG1583|consen 60 PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFS 139 (330)
T ss_pred CCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeec
Confidence 6788999999999999999999999999 89999999999999999999999999999999999999999999999752
Q ss_pred --CC---------c---c----chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHH-hhcc
Q 023136 85 --DL---------Q---L----NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGP-FLDG 145 (287)
Q Consensus 85 --~~---------~---~----~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 145 (287)
|. + . ..+|+.+...+.+..|...++++..-|+++-++-+.++|.+..+....++..- +...
T Consensus 140 ~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~ 219 (330)
T KOG1583|consen 140 SKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSH 219 (330)
T ss_pred CcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHH
Confidence 11 0 0 13799999999999999999999999999889999999999888766544321 1111
Q ss_pred cc----CCc---cccccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhh
Q 023136 146 LL----TNK---NVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN 218 (287)
Q Consensus 146 ~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~ 218 (287)
+. ... +.... .-+..|+.++..++..|++--..|....++++.+.++.-++|..+++++|++.|.+++++..
T Consensus 220 ~~~~~~se~~~~p~~g~-~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h 298 (330)
T KOG1583|consen 220 WRLAFKSESYLIPLLGF-KVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWH 298 (330)
T ss_pred HHHHhcCcceeccccCc-cccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHH
Confidence 11 100 01111 13567788999999998888888888999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhcch
Q 023136 219 ILGILIAVIGMVLYSYCCSLE 239 (287)
Q Consensus 219 ~~G~~lil~g~~~~~~~~~~~ 239 (287)
|+|..++..|.++|.-...+.
T Consensus 299 ~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 299 WLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred HHHHHHHHHHHHHHHHHHcCc
Confidence 999999999999998654433
No 25
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.74 E-value=2.7e-16 Score=136.04 Aligned_cols=224 Identities=22% Similarity=0.243 Sum_probs=178.0
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC------
Q 023136 12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD------ 85 (287)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~------ 85 (287)
.++..-+++|+++..+.+.++.+.+++++++..++.++.|++++++++++|++++||.++++.++|+.++-.+.
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a 172 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA 172 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 44555688999999999999999999999999999999999999999999999999999999999999886211
Q ss_pred -----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136 86 -----LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY 160 (287)
Q Consensus 86 -----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
.+....|....+.+++..++..++.+|++|+-+.+-+-.......+|.++.++.....++....+..+-.+++..
T Consensus 173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~ 252 (345)
T KOG2234|consen 173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSI 252 (345)
T ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHH
Confidence 123468999999999999999999999999766666655555555666666555444443222234445667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhcch
Q 023136 161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLE 239 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~~~ 239 (287)
.|+.++..++.+.... ...++.+-+.-.....+..+++.+.|+.++|-++|....+|..+++.++.+|...+.++
T Consensus 253 vw~vVl~~a~gGLlvs----~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 253 VWLVVLLNAVGGLLVS----LVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHhccchhHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 7777777777764333 34677777777777778899999999999999999999999999999999998544433
No 26
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.74 E-value=7.8e-16 Score=129.67 Aligned_cols=213 Identities=16% Similarity=0.151 Sum_probs=163.7
Q ss_pred HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchHHHHHH
Q 023136 17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLS 96 (287)
Q Consensus 17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~l~ 96 (287)
.+++.+.++..+..+...-.+-.+++=.+..|++.++++.+++|||+++.||++++++.+|+........+.++....+
T Consensus 78 ~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l- 156 (293)
T COG2962 78 TALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL- 156 (293)
T ss_pred HHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH-
Confidence 4677788999999999888888888888888999999999999999999999999999999998887666777664444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHH
Q 023136 97 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVN 176 (287)
Q Consensus 97 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (287)
+++|++|...-|+ .++++.+..+...+.-.+..+.+....+...+ +....+...+.+.+..|.++..--
T Consensus 157 ---a~sf~~Ygl~RK~----~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~----~~~~~~~~~~~LLv~aG~vTavpL 225 (293)
T COG2962 157 ---ALSFGLYGLLRKK----LKVDALTGLTLETLLLLPVALIYLLFLADSGQ----FLQQNANSLWLLLVLAGLVTAVPL 225 (293)
T ss_pred ---HHHHHHHHHHHHh----cCCchHHhHHHHHHHHhHHHHHHHHHHhcCch----hhhcCCchHHHHHHHhhHHHHHHH
Confidence 4889999974333 35688888877766666555555544442211 111122334455666666654433
Q ss_pred HHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhcchhh
Q 023136 177 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQ 241 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~~~~~ 241 (287)
.+.....++.+=.+.++..|++|....+++++++||+++..++.+.++|.+|.++|.....++.+
T Consensus 226 ~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r 290 (293)
T COG2962 226 LLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTAR 290 (293)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445588888889999999999999999999999999999999999999999999987665443
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.73 E-value=7.4e-17 Score=127.96 Aligned_cols=143 Identities=31% Similarity=0.574 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-----cCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccc-----cchhH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKK-----FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFK-----YTPYV 161 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~ 161 (287)
|.++++.++++.|+++++.|+..++ .+.++.++++|+++.+.+.+++..++.|+........... .....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7889999999999999999999987 5889999999999999999999888887654222221111 14567
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 162 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
+..++..++.++.+|+..+..++++||++.++.+.+|.++.+++|+++|||++|+.+++|+++.++|+++|+|
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999874
No 28
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.73 E-value=2e-16 Score=136.19 Aligned_cols=182 Identities=13% Similarity=0.088 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccchHHHH
Q 023136 15 MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSV 94 (287)
Q Consensus 15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~ 94 (287)
...+++.+.+..+.+.++++++++.++++.++.|+++++++++++|||+++++|++++++++|+.++..++.+.. .
T Consensus 74 ~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~ 149 (256)
T TIGR00688 74 LLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----W 149 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----H
Confidence 334666788899999999999999999999999999999999999999999999999999999997755332222 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHH
Q 023136 95 LSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVS 174 (287)
Q Consensus 95 l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (287)
++++++++|+.|.+..|+..++ +..+...+. ............ ..++... . .... ...|..++..++.+..
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~--~~~~-~~~~~~l~~~g~~t~i 220 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNT---DLAGFCLET-LSLMPVAIYYLL-QTDFATV-Q--QTNP-FPIWLLLVLAGLITGT 220 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCC---CcchHHHHH-HHHHHHHHHHHH-HhccCcc-c--ccCc-hhHHHHHHHHHHHHHH
Confidence 5789999999999999997653 222222211 111111111111 1111110 0 0111 1123334444455555
Q ss_pred HHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHh
Q 023136 175 VNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL 209 (287)
Q Consensus 175 ~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~ 209 (287)
.+...+..+++.++.+.+.+.+++|+++.+++.++
T Consensus 221 ~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 221 PLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 67777888999999999999999999999999864
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.73 E-value=4.5e-16 Score=136.25 Aligned_cols=211 Identities=16% Similarity=0.163 Sum_probs=158.5
Q ss_pred CCchhHHHHHHH----HHHHHhhhcccccccchhHHHHHHh-hHHHHHHHHHHHhcceecchhh----HHHHHHHhhhhe
Q 023136 9 FDPRAVMGFGVL----NGISIGLLNLSLGFNSVGFYQMTKL-AIIPCTILLETLFFRKKFSRNI----QLSLVILLVGVG 79 (287)
Q Consensus 9 ~~~~~~~~~~~~----~~~~~~~~~~al~~~~~~~~~~i~~-~~pi~~~l~~~l~~~e~~~~~~----~~~~~l~~~G~~ 79 (287)
++.++.++.+.+ .+.+..+++.+.++++++.+..+.+ ++++++++.+.+++|||.++++ ++|++++++|+.
T Consensus 53 ~~~~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~ 132 (290)
T TIGR00776 53 FWALSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVY 132 (290)
T ss_pred ccccHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHh
Confidence 344556666555 4455588889999999999999998 8899999999999999999999 999999999999
Q ss_pred eeeecCCc-------cc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHh---HHHHHHHHHHHHhhccccC
Q 023136 80 IATVTDLQ-------LN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSC---PYQALTLFIIGPFLDGLLT 148 (287)
Q Consensus 80 l~~~~~~~-------~~-~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ 148 (287)
++...+.+ .+ ..|+++++.|+++|+.|.+..|+.. .+|.+..+.+. +.+..++.... ..
T Consensus 133 l~~~~~~~~~~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~--~~---- 202 (290)
T TIGR00776 133 LTSRSKDKSAGIKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG----VDGLSVLLPQAIGMVIGGIIFNLGH--IL---- 202 (290)
T ss_pred eEEeccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHcC----CCcceehhHHHHHHHHHHHHHHHHH--hc----
Confidence 88753221 23 6899999999999999999999762 37777644333 33333332211 00
Q ss_pred CccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc-ccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhh----hhHH
Q 023136 149 NKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIG-KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGIL 223 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~----~G~~ 223 (287)
. .+. .....+ ..+..+++....+...+...+ +.++.+.+++.+++|+.+.+++++++||+.+..++ +|++
T Consensus 203 ~---~~~-~~~~~~-~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~ 277 (290)
T TIGR00776 203 A---KPL-KKYAIL-LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGII 277 (290)
T ss_pred c---cch-HHHHHH-HHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHH
Confidence 0 001 112223 333366664444555556678 99999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 023136 224 IAVIGMVLYSY 234 (287)
Q Consensus 224 lil~g~~~~~~ 234 (287)
+++.|+.+...
T Consensus 278 lIi~~~~l~~~ 288 (290)
T TIGR00776 278 LIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 30
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.73 E-value=1.2e-18 Score=143.89 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=171.3
Q ss_pred hhHH-HHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec-----C
Q 023136 12 RAVM-GFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT-----D 85 (287)
Q Consensus 12 ~~~~-~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~-----~ 85 (287)
|+|+ .-+.+...+..+.+++++|++.+.+.++..++|++|.+++|.++|||+++...++..+.+.|++++..+ +
T Consensus 97 R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~ 176 (346)
T KOG4510|consen 97 RKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGD 176 (346)
T ss_pred EEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCC
Confidence 4444 448888888999999999999999999999999999999999999999999999999999999999762 1
Q ss_pred C---------ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccc
Q 023136 86 L---------QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFK 156 (287)
Q Consensus 86 ~---------~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 156 (287)
. +.+..|...++.++++.|-.+++.|++.|+ .+....+.|..+.+.+..++....+. ..+..
T Consensus 177 ~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~--~h~~msvsyf~~i~lV~s~I~~~~ig-------~~~lP 247 (346)
T KOG4510|consen 177 TTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKN--AHAIMSVSYFSLITLVVSLIGCASIG-------AVQLP 247 (346)
T ss_pred CccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcc--ccEEEEehHHHHHHHHHHHHHHhhcc-------ceecC
Confidence 1 123568888999999999999999999884 46666666777777766655444333 12333
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 157 YTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
+...-+++++..|+.++.-+......++.--+-..++..+.+.+++.++.+++||+.++++.+.|.++++.+.+.....
T Consensus 248 ~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~ 326 (346)
T KOG4510|consen 248 HCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALK 326 (346)
T ss_pred ccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHH
Confidence 3344445666677777777888888876666666778889999999999999999999999999998888887765543
No 31
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.72 E-value=8.5e-17 Score=133.30 Aligned_cols=231 Identities=16% Similarity=0.171 Sum_probs=193.8
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC
Q 023136 6 HKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD 85 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~ 85 (287)
++..|||.+..++.+..+...+.|-++.|++.+...+++++-.+-+++.+.++-++|+.++.+++..++..|+++....|
T Consensus 101 ~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLAD 180 (367)
T KOG1582|consen 101 RRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLAD 180 (367)
T ss_pred ceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999888755
Q ss_pred ----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhH
Q 023136 86 ----LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYV 161 (287)
Q Consensus 86 ----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
.+++..|+++.-.+-++.|+-...+++.++.++.+..++.+|....+.+.++......++........ .......
T Consensus 181 s~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fc-aehp~~t 259 (367)
T KOG1582|consen 181 SQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFC-AEHPVRT 259 (367)
T ss_pred cccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHH-HhCcHhH
Confidence 35778999999999999999999999999988889999999999888887776555444332221111 1122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 162 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
....++-+..++.-.......++..++.++..+.+.|..+++++|+++|..++|....-|..+++.|+.+..+.++
T Consensus 260 yGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 260 YGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 3445555555655566666678999999999999999999999999999999999999999999999999887663
No 32
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.68 E-value=2.4e-15 Score=123.76 Aligned_cols=212 Identities=16% Similarity=0.148 Sum_probs=164.0
Q ss_pred CCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC--
Q 023136 8 PFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD-- 85 (287)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~-- 85 (287)
+.+|+.....|+..+..+.++|.+++.+|.+.+..+.++-|+.+.+++ .+|.+ ..+-+.+.+.|+.++....
T Consensus 68 ~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~~--d~vwvaLAvlGi~lL~p~~~~ 141 (292)
T COG5006 68 KPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRLR--DFVWVALAVLGIWLLLPLGQS 141 (292)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccchh--hHHHHHHHHHHHHhheeccCC
Confidence 344566777799999999999999999999999999999999987654 34443 4445566677777665422
Q ss_pred -CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHH
Q 023136 86 -LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFF 164 (287)
Q Consensus 86 -~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
...+..|..+++.++.||+.|.+..||..+. .+..+.+..-+..++++.+++..... -+..+++..+..
T Consensus 142 ~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~--~~g~~g~a~gm~vAaviv~Pig~~~a--------g~~l~~p~ll~l 211 (292)
T COG5006 142 VWSLDPVGVALALGAGACWALYIVLGQRAGRA--EHGTAGVAVGMLVAALIVLPIGAAQA--------GPALFSPSLLPL 211 (292)
T ss_pred cCcCCHHHHHHHHHHhHHHHHHHHHcchhccc--CCCchHHHHHHHHHHHHHhhhhhhhc--------chhhcChHHHHH
Confidence 3567899999999999999999999998863 35566666666677777666554322 123345556666
Q ss_pred HHHHHHHHHHHHHHHHH-hhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 165 IVLSCLISVSVNFSTFL-VIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 165 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
.+..++++...-|..=. .+++.++-++++...++|.++.+.+++++||++|+.||+|+..++.+....++.
T Consensus 212 aLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 212 ALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred HHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccc
Confidence 77777777655554433 399999999999999999999999999999999999999999999998876654
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.65 E-value=3.7e-17 Score=134.33 Aligned_cols=216 Identities=14% Similarity=0.194 Sum_probs=170.1
Q ss_pred CCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC---
Q 023136 9 FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--- 85 (287)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~--- 85 (287)
..|++++.+++...-+.++...+.||++.....++.+...+.+.+++|+++|.|+++.|+.|++++++|+.++...|
T Consensus 76 ~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~a 155 (336)
T KOG2766|consen 76 AKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHA 155 (336)
T ss_pred HHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeecc
Confidence 34677888888888788888899999999999999999999999999999999999999999999999999887633
Q ss_pred -----CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchh
Q 023136 86 -----LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPY 160 (287)
Q Consensus 86 -----~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
.+....|+++.++++-+||..++..+.+.| +.+..+++....++|+++..+- ++.+. .......|+..
T Consensus 156 gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~----~~~~tl~w~~~ 228 (336)
T KOG2766|consen 156 GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFER----HHVSTLHWDSA 228 (336)
T ss_pred ccccCCCCCccCcEEEEecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-Hhhhc----cceeeEeehHH
Confidence 234468999999999999999999999999 4599999999999999888776 44442 22233344433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
....+. ..+.-+..+...-..++..+++...+-......+++++ ..||-+++|...++.+.+..|.++|..
T Consensus 229 i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 229 IFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 222222 22222233334444588888888777777778888887 677888999999999999999999953
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.40 E-value=2.3e-12 Score=108.58 Aligned_cols=193 Identities=18% Similarity=0.091 Sum_probs=131.0
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee--------------------cCC-------c
Q 023136 35 NSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV--------------------TDL-------Q 87 (287)
Q Consensus 35 ~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~--------------------~~~-------~ 87 (287)
++++....+++..++++++..+.+.++|++..|+++.++...|++.... ++. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 4677888899999999999999999999889999999998888874221 111 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccc-cCCccccccccchhHHHHHH
Q 023136 88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGL-LTNKNVFAFKYTPYVLFFIV 166 (287)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 166 (287)
....|....+.+.++.++..+++++..|+.+.+.+.......+++.+.... ....... ......+...++...+..++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFS-VLLWSDGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHH-HHhhcccchhhccCcccCCchHHHHHHH
Confidence 345678888888889999999999987754333222222222222221111 1111111 00011111223333333333
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 167 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
. ...+ +.+..+.+++.++.+.+....++++++.++|+++|||+++..+++|..+++.|+.+|
T Consensus 161 ~-~a~~---~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 L-NVGG---GLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred H-HHhc---CceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 3 3333 566777899999999999999999999999999999999999999999999987654
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.19 E-value=2.4e-10 Score=86.85 Aligned_cols=124 Identities=20% Similarity=0.379 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH-HHHHHHHH
Q 023136 101 LTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI-SVSVNFST 179 (287)
Q Consensus 101 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 179 (287)
++||.+.++.|+..++ .|+.+..+++...+.+ +++......... ....+...+...+..+.+ ....+...
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP------FKNLSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc------ccCCChhhhhhhhHhhccceehHHHHH
Confidence 4688999999999985 5999999999998887 655555544322 111222222333444444 34556777
Q ss_pred HHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 180 FLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 180 ~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
+..+++.++...+.+.+++|+++.++++++++|++++.+++|+.+++.|+.+..
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999998764
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.17 E-value=4.5e-10 Score=83.33 Aligned_cols=134 Identities=18% Similarity=0.191 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
..++++.+++++++.-++.|--.+ ++||..-+...++.....+.......+++.. ....++..|..++++++.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~-----~~~~~~k~~lflilSGla 76 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQA-----GGEIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceec-----ccccCcceehhhhHHHHH
Confidence 468899999999999999999888 5688877777777666666655554443321 111334455677777766
Q ss_pred HHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 172 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
+....+++|++++.-.+.....+.-+.+++++++|+++++|++|..+++|+.+|++|.++.
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 6666777888899998888888999999999999999999999999999999999998764
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.11 E-value=1.7e-10 Score=91.94 Aligned_cols=217 Identities=12% Similarity=0.049 Sum_probs=156.4
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecC--Cccc
Q 023136 12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTD--LQLN 89 (287)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~--~~~~ 89 (287)
++..|++++..+..+.+..+++.++++.++.+..+.-.|+.+++++.+|+|+...+++++++.+.|+.+....| ...+
T Consensus 54 ~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e 133 (290)
T KOG4314|consen 54 IRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADE 133 (290)
T ss_pred eeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhh
Confidence 45567777888888899999999999999999999999999999999999999999999999999999988644 3456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHH-----HhhccccCCccccccccchhHHHH
Q 023136 90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIG-----PFLDGLLTNKNVFAFKYTPYVLFF 164 (287)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
++|+..++.|+.+.|+|-+.-|+.....+. -+..-+++-.+..-+.+.. +.+.+.-+.++....+| ..
T Consensus 134 ~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~--Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PW-----G~ 206 (290)
T KOG4314|consen 134 IIGIACAVGSAFMAALYKVLFKMFIGNANF--GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPW-----GC 206 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCcc--hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCc-----hh
Confidence 899999999999999999999998874322 1222222222222221111 11111111111111122 34
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 165 IVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
....+.+....|+.....+..+.|...|+-.....+.-...+.++=+-..+...+.|-.+|.+|.++....
T Consensus 207 l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 207 LCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred hhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 44555555566777777778888888887666666667777776655588999999999999999887643
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.01 E-value=2.6e-08 Score=84.88 Aligned_cols=200 Identities=20% Similarity=0.207 Sum_probs=142.5
Q ss_pred HHHHHHHHhhhcccccccchhHHHHHH-hhHHHHHHHHHHHhcceecchhhHH----HHHHHhhhheeeeecCCc-----
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQL----SLVILLVGVGIATVTDLQ----- 87 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~l~~~l~~~e~~~~~~~~----~~~l~~~G~~l~~~~~~~----- 87 (287)
+++...+...++.+++++.++.+--+. ..+.+.+.+++.++++|..+..+++ +++++++|+.+....|.+
T Consensus 52 G~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~ 131 (269)
T PF06800_consen 52 GAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSS 131 (269)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 677778889999999999998766554 6777889999999999988877664 889999999988764321
Q ss_pred ---cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHH
Q 023136 88 ---LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFF 164 (287)
Q Consensus 88 ---~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
....|.+..+++.+.|..|.++.|.. +.++++...=+++--.+..+++..... ....+ .. .+.
T Consensus 132 ~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~~-----~~~~~-k~----~~~ 197 (269)
T PF06800_consen 132 SKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFSK-----KPFFE-KK----SWK 197 (269)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhccc-----ccccc-cc----hHH
Confidence 12469999999999999999986662 457877776554322222222222111 11111 11 123
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHHH
Q 023136 165 IVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVL 231 (287)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~~ 231 (287)
-++.+++=...|...+...++.+..+.=.+..+..+++.+.+++++||+=+.+++ +|++++++|.++
T Consensus 198 nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 198 NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 3444444445567777778888888888899999999999999999998787644 688888888754
No 39
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.98 E-value=1.7e-08 Score=86.85 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 170 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.|.++.++++++|+...+..|. .. +++|.++.++..+++.+.+++...............+.......+......++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 4889999999999999999998 44 47999999999999887766554333211000000000001112233444555
Q ss_pred HHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 171 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
.........+..++++++..++++.+..|+++.++++++++|+++..+++|..+.++|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 444556777788999999999999999999999999999999999999999999999998764
No 40
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.94 E-value=4.1e-08 Score=86.35 Aligned_cols=142 Identities=13% Similarity=0.194 Sum_probs=105.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHH
Q 023136 86 LQLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFI 165 (287)
Q Consensus 86 ~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
.+....|.++.+.+++.|+...++.|.. . +++|.++.+++..++.+++++......+...... .. .+...+...
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 76 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT--LI-QTPQKIFML 76 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH--HH-cCHHHHHHH
Confidence 3445689999999999999999999764 4 4799999999999988766654332221100000 00 112222223
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 166 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
+..++.........++.++++++...++..+..|++..++++++++|+++..+++|.++.++|+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34444444457777888999999999999999999999999999999999999999999999998765
No 41
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.89 E-value=2.9e-09 Score=79.92 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=66.8
Q ss_pred CchhHHHHHHHHH-HHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCc
Q 023136 10 DPRAVMGFGVLNG-ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQ 87 (287)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~ 87 (287)
++..+...+++.. .++.+.+.++++.+ +.+..+.++.|+++++++++++|||++++++.+++++++|++++..+|.+
T Consensus 33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3344455566665 88999999999999 58889999999999999999999999999999999999999998876654
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.79 E-value=2.5e-07 Score=80.71 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136 93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 172 (287)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (287)
..+.+.+++++|...+..|+..+++ ++. ..+....+.+.+.+.......... ... .....+...+..++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~ 73 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PDF--LWWALLAHSVLLTPYGLWYLAQVG----WSR-LPATFWLLLAISAVAN 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hHH--HHHHHHHHHHHHHHHHHHhcccCC----CCC-cchhhHHHHHHHHHHH
Confidence 5688999999999999999877753 443 344444555555444332110000 000 1122333455555566
Q ss_pred HHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 173 VSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
.......+...++.++...+.+.+..|+++.++++++++|+++..+++|..+++.|+.+...
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66677888889999999999999999999999999999999999999999999999987654
No 43
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.79 E-value=2e-08 Score=88.02 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=60.5
Q ss_pred HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 83 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~ 83 (287)
-+.++.+..+...++.+.|.+..+-+.....++..+++..++|||++++.+.|..++++|..++..
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 345677888999999999999999999999999999999999999999999999999999987654
No 44
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.71 E-value=7.2e-07 Score=80.29 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
-+..++..-++|+.++++.|...+. ++++....+|....++++++++....+.... .+ ..++..+..+.+.+++
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~----~~-~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSRS----LP-PLSVSILSKIGLLGFL 87 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhcc----cC-cchHHHHHHHHHHHHH
Confidence 4566788889999999999999964 7899999999999988888776554331100 00 1112233344445555
Q ss_pred HHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHh------cCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 172 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVL------LHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~------~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
+..++...+..++++++..++++.++.|+++.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 54455667778999999999999999999999999999 6999999999999999999987654
No 45
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.56 E-value=6.1e-08 Score=72.12 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136 15 MGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 83 (287)
Q Consensus 15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~ 83 (287)
..-|+..++++.+++.+++.-.++.+.-+..++|+++++++++++|||++..+|+|++++++|++++..
T Consensus 71 ilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 71 ILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 334777889999999999999999999999999999999999999999999999999999999998763
No 46
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.52 E-value=9.9e-08 Score=72.26 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=62.8
Q ss_pred hhHHHHHHH-HHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136 12 RAVMGFGVL-NGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~ 81 (287)
...+..+.+ ...+..+.+.++++++++.++++.++.|+++.+++++++||++++++++|++++++|+.++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 54 LWLLFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hhhhHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 444445655 4788999999999999999999999999999999999999999999999999999999764
No 47
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.50 E-value=3e-07 Score=68.60 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=59.7
Q ss_pred HHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 19 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 19 ~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
++++.+..+...+++.+|.+.+..+.++.++++++++++++|||++++|++|+.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999999999998764
No 48
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.43 E-value=9.7e-06 Score=71.26 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 170 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.+.++++.++++|+......|...+ +++|.....+....+.+++++.. . .+. .. ..... ..+..++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~---~-~~~---~~--~~~~~---~~~~~~l 69 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTV---G-FPR---LR--QFPKR---YLLAGGL 69 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHc---c-ccc---cc--cccHH---HHHHHhH
Confidence 4677899999999999999999887 56999999999888877766432 1 111 00 11111 1122222
Q ss_pred HHHHHHHHHHHh----hcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 171 ISVSVNFSTFLV----IGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 171 ~~~~~~~~~~~~----~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
....+....+.. .+..++...+++.++.|+++.++++++++|+++..+++|+.+.++|+.+...
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 222223333332 2456778889999999999999999999999999999999999999987653
No 49
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.40 E-value=9.2e-06 Score=69.25 Aligned_cols=141 Identities=15% Similarity=0.233 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHH
Q 023136 89 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS 168 (287)
Q Consensus 89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
...|+++++.+-+.|+....+.|-+.+ +++.++..+..+++.+.++.......++.+..+ ...++..+..+...
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~---~~~~p~~~~~~~l~ 78 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELKQ---LLKQPKTLLMLALT 78 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHhCcHHHHHHHHH
Confidence 457999999999999999988877544 589999999999999888776666554433222 22334445455555
Q ss_pred HHHHHHHHHHHH-HhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136 169 CLISVSVNFSTF-LVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 236 (287)
Q Consensus 169 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~ 236 (287)
++.- ..|+..| ++..+-....+|.=.++.|.+.++.|.++++|+++..|+++..+..+|+....+..
T Consensus 79 a~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~ 146 (293)
T COG2962 79 ALLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL 146 (293)
T ss_pred HHHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 4443 3455444 55777788899999999999999999999999999999999999999998876543
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.39 E-value=2.2e-05 Score=68.96 Aligned_cols=130 Identities=12% Similarity=-0.045 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136 93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 172 (287)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (287)
....+.-.+.|+...+..|...+ +++|.+...+...++++++++........ .. ....+......+.+.
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~----~~~~~~~~~~~g~~~ 78 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHP-----LP----TLRQWLNAALIGLLL 78 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CC----cHHHHHHHHHHHHHH
Confidence 34567778899999999998877 67999999999999888876654332211 00 111122223333332
Q ss_pred -HHHHHHHHHhh-cccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 173 -VSVNFSTFLVI-GKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 173 -~~~~~~~~~~~-~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
.......+... ++.++...++..++.|+++.+++.+ ++|+++..+++|+.+.++|+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 79 LAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 22344445555 8888888999999999999999985 7999999999999999999987653
No 51
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.38 E-value=7e-05 Score=66.58 Aligned_cols=217 Identities=12% Similarity=0.052 Sum_probs=130.1
Q ss_pred HHHHHHHHHhhhcccccccchhHHH-HHHhhHHHHHHHHHHHhcceec---c----hhhHHHHHHHhhhheeeee----c
Q 023136 17 FGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKF---S----RNIQLSLVILLVGVGIATV----T 84 (287)
Q Consensus 17 ~~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~l~~~l~~~e~~---~----~~~~~~~~l~~~G~~l~~~----~ 84 (287)
.+++.+.+..++..+++|+.++... +-..++-+..+++..++++|.. + ..-.+|++++++|+++... .
T Consensus 79 ~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k 158 (345)
T PRK13499 79 FGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLK 158 (345)
T ss_pred HHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3666677788888899999999765 4456778888889999988754 2 3456889999999998876 2
Q ss_pred CC---------ccchHHHHHHHHHHHHHHHHH-------HHHHHHHhhcCCCHHHHHHHHhH---HHHHHHHH-HHHhhc
Q 023136 85 DL---------QLNVLGSVLSLLAVLTTCVAQ-------IMTNTIQKKFKVSSTQLLYQSCP---YQALTLFI-IGPFLD 144 (287)
Q Consensus 85 ~~---------~~~~~G~~l~l~s~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~~ 144 (287)
|. .....|++++++|++.++.|+ ...+...+ .+.++.....-+.. .+.+..-+ +.....
T Consensus 159 ~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~ 237 (345)
T PRK13499 159 ERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFCFIRL 237 (345)
T ss_pred ccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 123579999999999999999 44443322 24455433332222 22221111 001100
Q ss_pred cccCCcc-ccccccc----hhHHHHHHHHHHHHHHHHHHHHHhhcccchhh----HHHhhhhhHHHHHHHHHHhcCCCcc
Q 023136 145 GLLTNKN-VFAFKYT----PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVT----YQVLGHLKTCLVLAFGYVLLHDPFS 215 (287)
Q Consensus 145 ~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~s~~~~l~~v~~~~~s~~~~~e~~~ 215 (287)
...+... ......+ .......++.+++=+..+.......++.+... ..+.+.+..+++.++++ ++||.=+
T Consensus 238 ~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~ 316 (345)
T PRK13499 238 AKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKG 316 (345)
T ss_pred hhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccC
Confidence 0101100 1111111 22334445555555555555555544442222 22334666689999999 5999766
Q ss_pred ------hhhhhhHHHHHHHHHHHHHh
Q 023136 216 ------WRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 216 ------~~~~~G~~lil~g~~~~~~~ 235 (287)
...++|++++++|..+..+.
T Consensus 317 a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 317 ASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhhc
Confidence 45678999999999887653
No 52
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.34 E-value=1.1e-05 Score=69.43 Aligned_cols=119 Identities=12% Similarity=0.050 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 023136 103 TCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLV 182 (287)
Q Consensus 103 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (287)
|+...+..|...+. ..++.+..+++...+.+.+.+..... ..........+.+++.....+...+..
T Consensus 1 Wg~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~a 67 (260)
T TIGR00950 1 WGTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR------------PPLKRLLRLLLLGALQIGVFYVLYFVA 67 (260)
T ss_pred CcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc------------cCHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677776664 46899999999887776665432211 011112223333333334556677778
Q ss_pred hcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 183 IGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 183 ~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
++++++...+++..+.|+++.+++.++++|+++..+++|+.+.++|+.+...
T Consensus 68 ~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 68 VKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 9999999999999999999999999999999999999999999999988653
No 53
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.30 E-value=4.5e-05 Score=58.35 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 170 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.|+++.+.+.++.+..+++.|+-.++.+..+. ... ....+. ...+ + ...+..++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~--~~~-----~~~~~~--~~~~------------p-----~~~i~lgl 55 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH--AWD-----FIAALL--AFGL------------A-----LRAVLLGL 55 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc--hhH-----HHHHHH--HHhc------------c-----HHHHHHHH
Confidence 47889999999999999999998875432111 110 000000 0000 0 01222333
Q ss_pred HHHHH-HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHH--hcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 171 ISVSV-NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYV--LLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~--~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
.++.. .+.+...+++.+...+..+..+.++...+.++. +|||++|+.+++|.++|++|+++.+.
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 33333 344455588888888887777777777777774 89999999999999999999999764
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.30 E-value=3.6e-05 Score=67.80 Aligned_cols=125 Identities=12% Similarity=0.101 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHH
Q 023136 93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLIS 172 (287)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (287)
.++.++++++|+...+..|...+ +++|....++....+++.+++.. .. . ...+ . ..+..++..
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~---~~--~-----~~~~--~---~~~~~g~~~ 68 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFV---AR--P-----KVPL--N---LLLGYGLTI 68 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHh---cC--C-----CCch--H---HHHHHHHHH
Confidence 35688899999999999998887 57999999999887665544321 10 0 0011 1 122222222
Q ss_pred HHHH-HHHHHhhcc-cchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 173 VSVN-FSTFLVIGK-TSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 173 ~~~~-~~~~~~~~~-~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
...+ ...+...++ .++...+++.+..|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 2222 233444555 5667888889999999999999999999999999999999999987653
No 55
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.28 E-value=5.7e-05 Score=68.04 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-HHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHH
Q 023136 100 VLTTCVAQIMTNTIQKKFKVS-STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFS 178 (287)
Q Consensus 100 ~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (287)
=.+...++.+.|+..+. .+ |+++..++...+.+...+.... . ....+. .......+..++..+++.......
T Consensus 58 y~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~-~-~~~~~~---~~~~~~~~~~llp~gl~~~~~~~~ 130 (350)
T PTZ00343 58 YALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWAT-G-FRKIPR---IKSLKLFLKNFLPQGLCHLFVHFG 130 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHh-C-CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567778888885 47 9999999998887665443321 1 111010 110112334455555555555555
Q ss_pred HHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 179 TFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 179 ~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
.+..++.+++..++++..+.|+++++++.++++|+++..+++|++++++|+.+...
T Consensus 131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 66779999999999999999999999999999999999999999999999998653
No 56
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.23 E-value=1.6e-05 Score=59.52 Aligned_cols=62 Identities=16% Similarity=0.306 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136 174 SVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 236 (287)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~ 236 (287)
..+...+...++.++ .......+.|+++.+++.++++|+++..+++|..++++|+++..+.+
T Consensus 47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 345555566787775 77788899999999999999999999999999999999999987753
No 57
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.15 E-value=0.00015 Score=63.97 Aligned_cols=121 Identities=14% Similarity=0.143 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 023136 105 VAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIG 184 (287)
Q Consensus 105 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
..++++|+..++. ..|..+..++...+.+...+... .+.... ...+...+..++..+++........+..++
T Consensus 16 ~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~ 87 (302)
T TIGR00817 16 YFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS--SGLPKR-----LKISSALLKLLLPVAIVHTIGHVTSNVSLS 87 (302)
T ss_pred HHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH--hCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888753 36888888887776655443311 111111 111222333444455555555667778899
Q ss_pred ccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 185 KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 185 ~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
++++...+++..+.|+++.+++.++++|+++..+++|..++++|+.+..
T Consensus 88 ~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 88 KVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred hccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999997653
No 58
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.03 E-value=6.5e-05 Score=65.87 Aligned_cols=129 Identities=15% Similarity=0.112 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
|.+++++++++|+...+..|+.. +.++.+... ...+.+++......... +. ......+...+.+++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~~~~~~-~~-------~~~~~~~~~g~l~G~~ 68 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAIAIFVL-PE-------FWALSIFLVGLLSGAF 68 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHHHHHhC-Cc-------ccccHHHHHHHHHHHH
Confidence 67899999999999999999875 345555542 33444444333222211 00 1123344445555555
Q ss_pred HHHHHHHHHHhhcccchhhHHHhhh-hhHHHHHHHHHHhcCCCcchhh----hhhHHHHHHHHHHHH
Q 023136 172 SVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRN----ILGILIAVIGMVLYS 233 (287)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~s~~~~-l~~v~~~~~s~~~~~e~~~~~~----~~G~~lil~g~~~~~ 233 (287)
=...|+..+...++.+......+.+ +.+++..+++.+++||+.+..+ ++|.+++++|+.+..
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 4456778888899988888877777 8888999999999999999999 999999999988864
No 59
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=1.9e-05 Score=68.15 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=118.4
Q ss_pred HHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCCccc-------h-
Q 023136 19 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN-------V- 90 (287)
Q Consensus 19 ~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~-------~- 90 (287)
+.++.+-..++.++.+.|.+..+.+.+++.+..++++..++|||+++...+|..++++|-.+++....+.+ +
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~ 151 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVW 151 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHH
Confidence 44678888889999999999999999999999999999999999999999999999999997776322110 0
Q ss_pred -----HHHHHHHHHHHHH-HHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHH------HHhhccccCCccccccccc
Q 023136 91 -----LGSVLSLLAVLTT-CVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFII------GPFLDGLLTNKNVFAFKYT 158 (287)
Q Consensus 91 -----~G~~l~l~s~~~~-a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~ 158 (287)
.++++-.+..+.. .+-..+. .+++ -...++.|..+++.+..+-. ...+.......+ +..+
T Consensus 152 ~~~~~~~Fliy~~~iil~~~il~~~~---~p~~--g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~--ql~~- 223 (335)
T KOG2922|consen 152 ELATEPGFLVYVIIIILIVLILIFFY---APRY--GQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN--QLFY- 223 (335)
T ss_pred HHhcCccHHHHHHHHHHHHHHHheee---cccc--cccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc--cccc-
Confidence 1222111111111 1111111 1111 11223444444444331100 000000011111 1112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhh-HHHHHHHHHHhcCC--Ccchhhh----hhHHHHHHHHHH
Q 023136 159 PYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYVLLHD--PFSWRNI----LGILIAVIGMVL 231 (287)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~-~v~~~~~s~~~~~e--~~~~~~~----~G~~lil~g~~~ 231 (287)
+..|.+++...............+++..++...+.+.++. .-+++..|.++|.| ..+..++ .|+..++.|+.+
T Consensus 224 ~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl 303 (335)
T KOG2922|consen 224 PLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL 303 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence 2333333333333333333445567777666555544444 55888899999987 5555554 578888888877
Q ss_pred H
Q 023136 232 Y 232 (287)
Q Consensus 232 ~ 232 (287)
.
T Consensus 304 L 304 (335)
T KOG2922|consen 304 L 304 (335)
T ss_pred e
Confidence 5
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.90 E-value=3.3e-05 Score=59.09 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHH--hcceecchhhHHHHHHHhhhheeeeec
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETL--FFRKKFSRNIQLSLVILLVGVGIATVT 84 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l--~~~e~~~~~~~~~~~l~~~G~~l~~~~ 84 (287)
-.+++++..+.+.+++..|++.+..+.+..++++.+.++. +++|++++.|++|+.++++|++++...
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 4457789999999999999999999999998888888885 899999999999999999999987654
No 61
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.87 E-value=0.00042 Score=61.58 Aligned_cols=139 Identities=22% Similarity=0.312 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIMTNTIQKK-FKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 169 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
.+.+++-..+++-+..++....+.++ .+.+..+..... ....++.......-.+........ ..-++..++.+
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y-~~l~~vy~~~~~~r~~~~~~~~~~-----~~~~w~y~lla 86 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNY-VLLALVYTPILLYRRGFKKWLKVL-----KRPWWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHH-HHHHHHHhhhhhhccccccchhhc-----chhHHHHHHHH
Confidence 45566666667777777777776664 222333333322 222222221111111110101111 11222333345
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 170 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
++=...|+..+.+.++++-....++.....++++++|++++++++++.+++|..+.++|+.+....
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 666677999999999999999999999999999999999999999999999999999999887654
No 62
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.84 E-value=5.1e-05 Score=57.08 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhHHHHHH-hhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136 12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTK-LAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 83 (287)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~ 83 (287)
..+....++++.++++...+++++|.+.+-.+- ...-+.++++++++++|++++.+++++.++++|++++-.
T Consensus 31 ~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 31 GGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 335566778889999999999999999877774 688999999999999999999999999999999987744
No 63
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.82 E-value=0.00053 Score=60.49 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhcCCC--HHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 023136 104 CVAQIMTNTIQKKFKVS--STQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFL 181 (287)
Q Consensus 104 a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (287)
..+.+.+|++.++...+ +..+++.+...+.+...+...... . . .. +... +.-....++.........+.
T Consensus 13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~-~--~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF08449_consen 13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-F-P--KS-RKIP----LKKYAILSFLFFLASVLSNA 83 (303)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-c-c--CC-CcCh----HHHHHHHHHHHHHHHHHHHH
Confidence 34667888888755445 777777776666655444332222 0 0 00 0011 11223333444445677778
Q ss_pred hhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 182 VIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 182 ~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
++++.+-.+..+....+++..++++.++++++.+..++++..++.+|+.+....+.
T Consensus 84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~ 139 (303)
T PF08449_consen 84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDS 139 (303)
T ss_pred HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccc
Confidence 88999999999999999999999999999999999999999999999999886544
No 64
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.81 E-value=0.00019 Score=53.45 Aligned_cols=57 Identities=21% Similarity=0.203 Sum_probs=48.9
Q ss_pred HHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 177 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
+.....+++.+...+-..-.+.++.+.++|+++|||++|+.+++|.+++++|+++..
T Consensus 52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 333445788888777777779999999999999999999999999999999998754
No 65
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.79 E-value=0.0016 Score=50.53 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
..++++.++++.+....++-++.++.+ ||+.-...+...+.+.+.+...+.... +.....+.+ ++...++++
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p------~w~~lGG~l 73 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP------WWAYLGGLL 73 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC------hHHhccHHH
Confidence 357889999999999999999988654 688888888888888877766665533 211111111 133447777
Q ss_pred HHHHHHHHHHhhcccchhhHHHhhhhh-HHHHHHHHHH-hc---CCCcchhhhhhHHHHHHHHHH
Q 023136 172 SVSVNFSTFLVIGKTSPVTYQVLGHLK-TCLVLAFGYV-LL---HDPFSWRNILGILIAVIGMVL 231 (287)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~-~v~~~~~s~~-~~---~e~~~~~~~~G~~lil~g~~~ 231 (287)
+..+-........+.++.........- -+.+++++.+ +| .+++++.+++|.+++++|+.+
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 777777777778888888777755444 4567777776 22 458999999999999999863
No 66
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.78 E-value=0.0016 Score=56.41 Aligned_cols=140 Identities=21% Similarity=0.120 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHH
Q 023136 90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 169 (287)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
..+....+..++.|+......++..+. ..+......+....+.+....... ... .. ....... .+...+..+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~--~~~~~~~~~ 77 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLL-LEP-RG---LRPALRP--WLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHH-hhc-cc---ccccccc--hHHHHHHHH
Confidence 457778888889999999988888875 235555555555544444221111 110 00 0001111 223344444
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHH-HhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 170 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGY-VLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~-~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
+.........+..++++++.......+..|++..+++. ++++|+++..+++|..+.+.|+.+......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 44444556666669999999999999999999999996 777999999999999999999998765443
No 67
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.00019 Score=52.33 Aligned_cols=69 Identities=28% Similarity=0.186 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhhcccccccchhHH-HHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 14 VMGFGVLNGISIGLLNLSLGFNSVGFY-QMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 14 ~~~~~~~~~~~~~~~~~al~~~~~~~~-~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
.+...++++.++.+...+++++|.+.+ .+-...-.+.+++.++++++|+++..+++++.++++|++.+-
T Consensus 33 ~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk 102 (106)
T COG2076 33 SILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK 102 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence 444566788999999999999999965 455667788889999999999999999999999999998653
No 68
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.62 E-value=0.00017 Score=53.53 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136 16 GFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 83 (287)
Q Consensus 16 ~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~ 83 (287)
..-+++++++.+...+++++|.+.+-.+ ....-+.+++.++++++|++++.+++++.++++|++++-.
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4456678888999999999999988777 4578888999999999999999999999999999997743
No 69
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.61 E-value=0.00021 Score=52.49 Aligned_cols=69 Identities=14% Similarity=0.019 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 14 VMGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 14 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
.+...++++.++++...+++.+|.+.+-.+ ...-.+.+++.+++++||++++.+++++.++++|++.+-
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 344566788999999999999999966554 447788999999999999999999999999999998763
No 70
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.58 E-value=0.00025 Score=52.43 Aligned_cols=67 Identities=15% Similarity=0.067 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136 15 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~ 81 (287)
....++++.++++...+++++|.+.+-.+ ....-+.+++.+++++||++++.|++++.++++|++.+
T Consensus 39 ~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 39 ILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 34456677889999999999999966554 45778888999999999999999999999999999764
No 71
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.45 E-value=0.0067 Score=53.21 Aligned_cols=125 Identities=14% Similarity=0.086 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHH
Q 023136 90 VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSC 169 (287)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
..|..+.+.++++++......|...+. .+|.+..++....+++++++....... . .....+...+..+
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~~--~~~~~~~~~R~~~a~l~l~~~~~~~~~------~----~~~~~~~~~~~~g 78 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFPL--VGAPGVTALRLALGTLILIAIFKPWRL------R----FAKEQRLPLLFYG 78 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHhHHhc------c----CCHHHHHHHHHHH
Confidence 578999999999999999999998884 699999999999988777654321110 0 0111111222233
Q ss_pred HHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 170 LISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
+.....+...+..++++++...++..+..|+++.+++. |++. +..+..+.++|+.+.
T Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li 135 (293)
T PRK10532 79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFL 135 (293)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHhee
Confidence 33444456667779999999999999999999887762 4433 334455556666554
No 72
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.39 E-value=0.00072 Score=57.68 Aligned_cols=76 Identities=26% Similarity=0.393 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 162 LFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
.......+++-...|...+..+++.+|.+..++...+.+++.+++.++++.+++..||.++.+..+|+.+......
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 3456677777777788999999999999999999999999999999999999999999999999999998765443
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.33 E-value=0.016 Score=45.08 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHH
Q 023136 89 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLS 168 (287)
Q Consensus 89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
.....++++.++++......++-++.+..+ +|..-.......+.+.++......++........+.. ++...+
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p------wW~~~G 75 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP------WWAWIG 75 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc------hHHHHc
Confidence 345678899999999999999999888654 6887777788888877777666644332222111111 234445
Q ss_pred HHHHHHHHHHHHHhhcccchhhHHHh-hhhhHHHHHHHHHHhcC----CCcchhhhhhHHHHHHHHHHHH
Q 023136 169 CLISVSVNFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLH----DPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~s~~~~~----e~~~~~~~~G~~lil~g~~~~~ 233 (287)
++++..+-........+.++.++..+ ..-+-+.+++++.+=+. .+++...++|.+++++|+++..
T Consensus 76 G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 76 GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 56665555555556777777665543 33345566777766543 4899999999999999966543
No 74
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.21 E-value=0.0038 Score=47.01 Aligned_cols=52 Identities=23% Similarity=0.403 Sum_probs=41.5
Q ss_pred hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
+++.+ .+.+++..-+..+.+.+.++++|||++|+.+++|+.+|++|++..+.
T Consensus 51 l~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 51 VKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 44443 23445555667888899999999999999999999999999998754
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.10 E-value=6.6e-05 Score=62.48 Aligned_cols=208 Identities=15% Similarity=0.177 Sum_probs=134.2
Q ss_pred hhHHHHHH----HHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhH----HHHHHHhhhheeee
Q 023136 12 RAVMGFGV----LNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQ----LSLVILLVGVGIAT 82 (287)
Q Consensus 12 ~~~~~~~~----~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~----~~~~l~~~G~~l~~ 82 (287)
.+.+..++ +...+...++.++++++++.+.-+ ..++-+-+.+++++.++|..+..+. ++++++++|+.+-.
T Consensus 56 ~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs 135 (288)
T COG4975 56 LTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTS 135 (288)
T ss_pred hhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEee
Confidence 34444444 444566667789999998877654 4566777889999999999887665 68889999999988
Q ss_pred ecCC---c-----cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccc
Q 023136 83 VTDL---Q-----LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFA 154 (287)
Q Consensus 83 ~~~~---~-----~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 154 (287)
..|. + ....|....+.|.+.|-.|.+..|... ++.++...-++. .+.+.+........ +
T Consensus 136 ~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~----v~g~saiLPqAi----GMv~~ali~~~~~~-----~ 202 (288)
T COG4975 136 KQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLFD----VDGLSAILPQAI----GMVIGALILGFFKM-----E 202 (288)
T ss_pred eeccccccccChHhhhhheeeeeeeccceeeeEeeecccc----ccchhhhhHHHH----HHHHHHHHHhhccc-----c
Confidence 7442 1 123688999999999999998766653 344544443332 22222222221110 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHH
Q 023136 155 FKYTPYVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMV 230 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~ 230 (287)
-..+...+ .-+..+++=..-|...+.+.++.+-.+.=.++.+--+++.+-++++++|+=|..++ +|++++++|..
T Consensus 203 ~~~~K~t~-~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai 281 (288)
T COG4975 203 KRFNKYTW-LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAI 281 (288)
T ss_pred cchHHHHH-HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhh
Confidence 11111122 23334444334466666666666655555566777889999999999999998876 57788888876
Q ss_pred HHH
Q 023136 231 LYS 233 (287)
Q Consensus 231 ~~~ 233 (287)
+..
T Consensus 282 ~lg 284 (288)
T COG4975 282 LLG 284 (288)
T ss_pred hhh
Confidence 643
No 76
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.07 E-value=0.0015 Score=46.98 Aligned_cols=57 Identities=21% Similarity=0.146 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhcccccccchhHHHH-HHhhHHHHHHHHHHHhcceecchhhHHHHHHH
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQM-TKLAIIPCTILLETLFFRKKFSRNIQLSLVIL 74 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~~-i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~ 74 (287)
..+++.+..+...+++++|.+.+-. ......+.+.+.+.++++|+++..|++++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 4478889999999999999997754 55689999999999999999999999998864
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.05 E-value=0.025 Score=41.78 Aligned_cols=51 Identities=22% Similarity=0.503 Sum_probs=42.5
Q ss_pred hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
+++.+ .+.+++..-+-.+.+.+.++++|+|++|+.+++|+.+++.|++..+
T Consensus 56 l~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 56 VKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 45443 3456677777888999999999999999999999999999998754
No 78
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.98 E-value=0.003 Score=49.55 Aligned_cols=65 Identities=23% Similarity=0.177 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136 17 FGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 17 ~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~ 81 (287)
.+++........+..++++++-..+++.....+.+.++++++++|+++..++.|+++.++|..+.
T Consensus 87 ~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 87 SGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 35556677778888999999999999999999999999999999999999999999999999765
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.91 E-value=0.011 Score=43.83 Aligned_cols=53 Identities=9% Similarity=0.333 Sum_probs=42.2
Q ss_pred hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
+++.+ .+.+++..-+..+.+.+.|+++|+|++|+.+++|+.+|++|+++.+..
T Consensus 51 l~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 51 LAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44443 233455566678888999999999999999999999999999997643
No 80
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.86 E-value=0.012 Score=52.57 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhcc--ccCCccccccccchhHHHHHH
Q 023136 89 NVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDG--LLTNKNVFAFKYTPYVLFFIV 166 (287)
Q Consensus 89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 166 (287)
...|+++.+++++|++...+-.|+ .|+ -++|.. |- ..+.+..++....... .++..+.. .+.+...+...+
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~---w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~-~~~~~~~~~~~~ 77 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKK---WSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYY-SSFSGSTLLPVF 77 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCC---CchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHH-HhcCHHHHHHHH
Confidence 357999999999999999998888 332 345544 43 2333222222211110 01111111 113344555566
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhH-HHhhhhhHHHHHHHHHHhcCCCc---c----hhhhhhHHHHHHHHHHHHHhh
Q 023136 167 LSCLISVSVNFSTFLVIGKTSPVTY-QVLGHLKTCLVLAFGYVLLHDPF---S----WRNILGILIAVIGMVLYSYCC 236 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~l~~v~~~~~s~~~~~e~~---~----~~~~~G~~lil~g~~~~~~~~ 236 (287)
+++++=..-|...+...++.+-... .+..-++-+...+++.+++||-. + ...++|.+++++|+.+..+.-
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag 155 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG 155 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666555556666666666554333 33444567788899999999743 2 235689999999999988743
No 81
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.052 Score=47.98 Aligned_cols=140 Identities=13% Similarity=0.146 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc--CCCHHHHHHHHhHHHHHHHHHHHHhhc-----cccCCccccccccchhHHHHH
Q 023136 93 SVLSLLAVLTTCVAQIMTNTIQKKF--KVSSTQLLYQSCPYQALTLFIIGPFLD-----GLLTNKNVFAFKYTPYVLFFI 165 (287)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 165 (287)
.+..+...+..+......|+..++. +..|.+..+..=+.-.++.......-+ ......... ....+.-....
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~-i~~~~~~~lk~ 95 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKE-ILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHH-HHhChHHHHHH
Confidence 4445555666666676777666533 345555555544444433332222221 111111110 01112123455
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 166 VLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
.+.+++-...|...|..+++.+|.++.+...++...+.+++.++++++++..||....+..+|+.+.+
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 55555555566677778999999999999999999999999999999999999999999999999876
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.81 E-value=0.016 Score=42.64 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=43.7
Q ss_pred hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
+++.+ .+.+++..-+-.+.+.+.++++|+|++|+.+++|+.++++|++..+.
T Consensus 50 l~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 50 MKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44443 35667778888899999999999999999999999999999998653
No 83
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.76 E-value=0.0066 Score=53.42 Aligned_cols=119 Identities=15% Similarity=0.244 Sum_probs=78.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHH
Q 023136 88 LNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVL 167 (287)
Q Consensus 88 ~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
...+|..+++.++++.+...+++|+...+.+.....-.. . ..+...++ .|+..+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~-----~-------------------~~~~l~~~-~W~~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGS-----G-------------------GRSYLRRP-LWWIGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-----h-------------------hhHHHhhH-HHHHHHH
Confidence 356899999999999999999999987643211110000 0 00000111 1222222
Q ss_pred HHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 168 SCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
...++ +...+.++...+......++.+.-++..+++.++++|+++...+.|+.++++|..+...
T Consensus 59 ~~~~g---~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLG---EILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcc---hHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 22334 23333445566666777788888999999999999999999999999999999987643
No 84
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.76 E-value=0.0032 Score=46.66 Aligned_cols=65 Identities=23% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
=+++..++..+++.++..+.+.+..+ +++.-++|++.++++.+|..+++.++|+.++++|+.+++
T Consensus 48 f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lcv 113 (113)
T PF10639_consen 48 FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALCV 113 (113)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeeeC
Confidence 34556677788888999999988877 588999999999998888899999999999999998863
No 85
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.73 E-value=0.017 Score=42.23 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=43.9
Q ss_pred hcccc-hhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 183 IGKTS-PVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 183 ~~~~~-~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
+++.+ .+.+++..-+-.+.+.+.++++|+|++|+.+++|+.++++|++..+..
T Consensus 51 lk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 51 LKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 44443 345677777788899999999999999999999999999999987653
No 86
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.62 E-value=0.0071 Score=51.60 Aligned_cols=132 Identities=15% Similarity=0.205 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
|++-+++|+++++...+=.|+.... |+.-.+.++.....++-++.....+ .+ .+..+.+++|.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g---Dg~~fQw~~~~~i~~~g~~v~~~~~-~p------------~f~p~amlgG~l 64 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG---DGFFFQWVMCSGIFLVGLVVNLILG-FP------------PFYPWAMLGGAL 64 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC---CcHHHHHHHHHHHHHHHHHHHHhcC-CC------------cceeHHHhhhhh
Confidence 5677889999999998877765432 5555555554333333222222221 10 111233444443
Q ss_pred HHHHHHHHHHhhcccc-hhhHHHhhhhhHHHHHHHHHH-hcCCC-----cchhhhhhHHHHHHHHHHHHHhhcch
Q 023136 172 SVSVNFSTFLVIGKTS-PVTYQVLGHLKTCLVLAFGYV-LLHDP-----FSWRNILGILIAVIGMVLYSYCCSLE 239 (287)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~~~~s~~~~l~~v~~~~~s~~-~~~e~-----~~~~~~~G~~lil~g~~~~~~~~~~~ 239 (287)
=...|.+..-.++..+ ++-..+.+..+-+.+...|-+ +||++ -.+.+++|.+++++|..++..-|...
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3333444444444443 223344566666777777655 56542 45678899999999999987655443
No 87
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.26 E-value=0.056 Score=46.51 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhh-hhhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHHHHHH
Q 023136 160 YVLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLG-HLKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSY 234 (287)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~~~~~ 234 (287)
..+...++++++=..-+...+...++.+-..+.-+. -++.+.+.++++++|||.-+..++ ++++++++|+.+.++
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 455556666666555666666666666555554444 456778899999999997776655 478899999998776
Q ss_pred hhcch
Q 023136 235 CCSLE 239 (287)
Q Consensus 235 ~~~~~ 239 (287)
.++++
T Consensus 123 ~~~~~ 127 (269)
T PF06800_consen 123 QDKKS 127 (269)
T ss_pred ccccc
Confidence 54433
No 88
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.25 E-value=0.00063 Score=57.47 Aligned_cols=135 Identities=15% Similarity=0.194 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCL 170 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.|..+.-.+ ..+....+..++.... +|.+.-....+.-.++..++....-.+.-.+.. .-. .+++=|+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g-~R~-------~LiLRg~ 105 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQPVIGPEG-KRK-------WLILRGF 105 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeeeeecCCC-cEE-------EEEeehh
Confidence 577776666 6666667766666552 555554444222222222221111111000000 001 1222233
Q ss_pred HHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 171 ISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
.++..-...|+++++.+-..++++....|++++++++.+++|+.|....+|..+.+.|+++......
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 3333345555566677777788899999999999999999999999999999999999998765433
No 89
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.62 E-value=0.019 Score=48.38 Aligned_cols=68 Identities=7% Similarity=0.047 Sum_probs=57.1
Q ss_pred hhHHHHHHHHH-----HHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhhe
Q 023136 12 RAVMGFGVLNG-----ISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVG 79 (287)
Q Consensus 12 ~~~~~~~~~~~-----~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~ 79 (287)
..+++.++..+ +-+.+...++..+|...+.++.+..|.+.++.++++++|+++..||+++.+++++..
T Consensus 206 p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 206 PSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 34555544332 446677789999999999999999999999999999999999999999999888776
No 90
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.41 E-value=0.03 Score=46.96 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhhee
Q 023136 14 VMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI 80 (287)
Q Consensus 14 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l 80 (287)
.....+..+.+..+....++|.+.....+...+.++++.+++.++++++++..++.|..+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344455667777888899999999999999999999999999999999999999999999999865
No 91
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.97 E-value=0.089 Score=37.72 Aligned_cols=45 Identities=24% Similarity=0.278 Sum_probs=23.6
Q ss_pred Hhhcccchhh-HHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 023136 181 LVIGKTSPVT-YQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA 225 (287)
Q Consensus 181 ~~~~~~~~~~-~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~li 225 (287)
.++++.+... +.+..-+..+...+.|.++|||++|+.+++|+.+|
T Consensus 48 ~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 48 LALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3466654333 35566677889999999999999999999998875
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.62 E-value=0.017 Score=48.44 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
.+++++.-++.|+..-....|... .|.+-..-+. .+++...+...+.. +...+...+..-+.+++.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT-~GALifaiiv~~~~---------~p~~T~~~~iv~~isG~~ 68 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTT-LGALIFAIIVFLFV---------SPELTLTIFIVGFISGAF 68 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhcc-HHHHHHHHHHheee---------cCccchhhHHHHHHhhhH
Confidence 567888889999988776665543 3443333232 23333322222111 111223334444455554
Q ss_pred HHHHHHHHHHhhcccchhhHHHhhh-hhHHHHHHHHHHhcCCCcchhhh----hhHHHHHHHHHHHHHh
Q 023136 172 SVSVNFSTFLVIGKTSPVTYQVLGH-LKTCLVLAFGYVLLHDPFSWRNI----LGILIAVIGMVLYSYC 235 (287)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~s~~~~-l~~v~~~~~s~~~~~e~~~~~~~----~G~~lil~g~~~~~~~ 235 (287)
=.+-+...+...+..+...++.+.+ ++-+-+.+++++.|||..++.++ ++.+++++|+.+..+.
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~ 137 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ 137 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee
Confidence 4455666667666665555554333 45678889999999998888765 3667888888776543
No 93
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.81 E-value=0.36 Score=40.44 Aligned_cols=62 Identities=21% Similarity=0.340 Sum_probs=51.4
Q ss_pred HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 176 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
......+++..+=-+..+--.-+|+-.+++|+++.+.+-+|..+....+|++|+.++.+++.
T Consensus 99 MVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~ 160 (337)
T KOG1580|consen 99 MVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKEN 160 (337)
T ss_pred HHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccc
Confidence 34455557777666666677788999999999999999999999999999999999988644
No 94
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.75 E-value=0.5 Score=35.10 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=32.6
Q ss_pred hhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 023136 194 LGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL 231 (287)
Q Consensus 194 ~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~ 231 (287)
.+.+.-+++.+.++++..|..+...++|+.+++.|+.+
T Consensus 74 ~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 74 ANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 45677889999998888888899999999999999754
No 95
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.99 E-value=0.18 Score=44.99 Aligned_cols=77 Identities=13% Similarity=0.273 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 161 VLFFIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
.....+..+.+=+..|+....+++.++.....++.....++++.++.++-+|++|+..+++..+-+.|+++.++.+.
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s 234 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDS 234 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccc
Confidence 34455666666667788888889999999999999999999999999999999999999999999999998876544
No 96
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=91.01 E-value=0.91 Score=35.09 Aligned_cols=71 Identities=15% Similarity=0.146 Sum_probs=52.2
Q ss_pred CCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhh-HHHHHHHHHHH----hcceecchhhHHHHHHHhhhhee
Q 023136 9 FDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLA-IIPCTILLETL----FFRKKFSRNIQLSLVILLVGVGI 80 (287)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~-~pi~~~l~~~l----~~~e~~~~~~~~~~~l~~~G~~l 80 (287)
.||..++ -+++......+.......++++....+.-+ +-+...++..+ .-|++++++|.+|+.++++|+.+
T Consensus 63 ~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 63 VPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred CChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3343333 577888888888899999988877665544 45555556654 45678999999999999999864
No 97
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.77 E-value=5.2 Score=35.61 Aligned_cols=26 Identities=8% Similarity=0.202 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023136 90 VLGSVLSLLAVLTTCVAQIMTNTIQK 115 (287)
Q Consensus 90 ~~G~~l~l~s~~~~a~~~v~~~~~~~ 115 (287)
..|+++-.+++++.+.+.+=.||..+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~ 31 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKG 31 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCC
Confidence 47999999999999999987777654
No 98
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=90.49 E-value=0.19 Score=43.55 Aligned_cols=75 Identities=11% Similarity=0.132 Sum_probs=63.3
Q ss_pred CCCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhhee
Q 023136 6 HKPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGI 80 (287)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l 80 (287)
..+--+++++..+.+.+.+..+-+.-++.-.+=..+++..+--+++++++.++++.+.++.||+|+.+.+.|+.+
T Consensus 236 ~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 236 EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 333446788889999998888888888777777777888899999999999999999999999999988888753
No 99
>PRK02237 hypothetical protein; Provisional
Probab=89.24 E-value=3.1 Score=30.45 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=40.7
Q ss_pred hHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136 190 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 236 (287)
Q Consensus 190 ~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~ 236 (287)
..+..+-+-.+.++++.+.+-|+++|...++|..+.++|+.+..+.+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 45566777788999999999999999999999999999998876643
No 100
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=86.80 E-value=9.3 Score=35.48 Aligned_cols=23 Identities=17% Similarity=0.592 Sum_probs=16.8
Q ss_pred CcchhhhhhHHHHHHHHHHHHHh
Q 023136 213 PFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 213 ~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
.-++..++|.++.++.++.....
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~r 304 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFR 304 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhccc
Confidence 45667789988888887765543
No 101
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=86.69 E-value=3.4 Score=30.13 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=40.6
Q ss_pred hHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136 190 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 236 (287)
Q Consensus 190 ~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~ 236 (287)
.++..+-+-.+.++++++.+-++++|...++|..+.++|+.+..+.+
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 35556677788999999999999999999999999999999877643
No 102
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=22 Score=31.31 Aligned_cols=135 Identities=11% Similarity=0.107 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHH
Q 023136 93 SVLSLLAVLTTCVAQIMTNTIQKKFKVSST-QLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLI 171 (287)
Q Consensus 93 ~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (287)
..-++.-+++..+..+..|.....++.+.. .++.+|++.+.+++...-..--. +..+.++. ..--.+-..++
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv-----~~~~l~~~--~~kk~~P~~~l 86 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLV-----NFRPLDLR--TAKKWFPVSLL 86 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcee-----ecCCcChH--HHHHHccHHHH
Confidence 444555555556667777887776665443 34457887777666554332110 00111111 11111111222
Q ss_pred HHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 172 SVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
-++..+.....+++.+--...++..+.++...+...++++.+++...+.....+++|...+..
T Consensus 87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 222334455568999999999999999999999999999999999999999999998877643
No 103
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=84.74 E-value=0.39 Score=39.09 Aligned_cols=60 Identities=23% Similarity=0.386 Sum_probs=53.7
Q ss_pred HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 176 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
|+.+..++++.+|..++.+..-...+..+++++.++|++....++..++.+.|+++..+.
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 677777899999999999988899999999999999999999999999999998876654
No 104
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=83.92 E-value=0.9 Score=40.20 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCC-CHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 023136 106 AQIMTNTIQKKFKV-SSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIVLSCLISVSVNFSTFLVIG 184 (287)
Q Consensus 106 ~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
.+++.|+.+++++. -|..++..+..++.+.....-. ....+..... +...+.-++-.++......+.....++
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~-l~~~~~~~~~-----~~~~~~~llpl~~~~~~~~v~~n~Sl~ 105 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKV-LKLVPPSKIS-----SKLPLRTLLPLGLVFCISHVLGNVSLS 105 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCCCccc-----cccchHHHHHHHHHHHHHHHhcchhhh
Confidence 45567777774332 4555555544445544443322 2211111111 112223344444444444556666689
Q ss_pred ccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhh
Q 023136 185 KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRN 218 (287)
Q Consensus 185 ~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~ 218 (287)
+.+-..+.++..++|+++.+++.++.+|+.+...
T Consensus 106 ~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~ 139 (316)
T KOG1441|consen 106 YVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT 139 (316)
T ss_pred ccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE
Confidence 9999999999999999999999999999876643
No 105
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.68 E-value=0.22 Score=43.56 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=81.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhhccccCCccccccccchhHHHHHH
Q 023136 87 QLNVLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFLDGLLTNKNVFAFKYTPYVLFFIV 166 (287)
Q Consensus 87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
..+..|.++++.+++..+...++.||..++.. .. . . . ......+.... ..|+..+
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~--~~---~--------------~-r----a~~gg~~yl~~-~~Ww~G~ 71 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAG--AS---G--------------L-R----AGEGGYGYLKE-PLWWAGM 71 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHh--hh---c--------------c-c----ccCCCcchhhh-HHHHHHH
Confidence 34678999999999999999998888777431 10 0 0 0 00011111111 2344555
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 167 LSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
+.-.++=..|++. ....++.....++.+..+...+++..+++|++++...+|+++.++|..+...
T Consensus 72 ltm~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 72 LTMIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 5555563334444 4455566777788888999999999999999999999999999999977654
No 106
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=83.63 E-value=32 Score=30.75 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhhcccccccchhHHH-HHHhhHHHHHHHHHHHhcc-------eecchhhHHHHHHHhhhheeeeec-
Q 023136 14 VMGFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFR-------KKFSRNIQLSLVILLVGVGIATVT- 84 (287)
Q Consensus 14 ~~~~~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~l~~~l~~~-------e~~~~~~~~~~~l~~~G~~l~~~~- 84 (287)
....+++.+.+-..+-.+.+|+..+..+ +...++-++-.++-.++.+ ++-....++|+++.++|+.++...
T Consensus 76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 3445677777777777888998777544 3333444444444333332 333457889999999999988651
Q ss_pred ---C-------Cccc-hHHHHHHHHHHHHHHHHHHHHHHHHh------hcCCCHHHHH--HHH-hHH-HHHHHHHHHHhh
Q 023136 85 ---D-------LQLN-VLGSVLSLLAVLTTCVAQIMTNTIQK------KFKVSSTQLL--YQS-CPY-QALTLFIIGPFL 143 (287)
Q Consensus 85 ---~-------~~~~-~~G~~l~l~s~~~~a~~~v~~~~~~~------~~~~~~~~~~--~~~-~~~-~~~~l~~~~~~~ 143 (287)
| .+++ ..|.++++.|.++.|..+.-.+.-.. +.+.+|+-.. .|. ... +.+.-+++....
T Consensus 156 ~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~ 235 (344)
T PF06379_consen 156 SMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLIL 235 (344)
T ss_pred HhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHH
Confidence 1 1222 37999999999999988775443221 1222332100 110 001 222223322222
Q ss_pred ccc-cC--Cccccccccc--hhHHHHHHHHHHHHHHHHHHHHHhhc----ccchhhHHHhhhhhHHHHHHHHHHhcCC--
Q 023136 144 DGL-LT--NKNVFAFKYT--PYVLFFIVLSCLISVSVNFSTFLVIG----KTSPVTYQVLGHLKTCLVLAFGYVLLHD-- 212 (287)
Q Consensus 144 ~~~-~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~l~~v~~~~~s~~~~~e-- 212 (287)
... .+ ...+.....+ ..-.....+.+++=|......-+.-. ..+.+.-.+.+.+..+++-+++.+ ++|
T Consensus 236 l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWK 314 (344)
T PF06379_consen 236 LAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWK 314 (344)
T ss_pred HhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 111 11 0111111111 12233334444433322222212222 233556666777777788888874 445
Q ss_pred ----CcchhhhhhHHHHHHHHHHHHH
Q 023136 213 ----PFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 213 ----~~~~~~~~G~~lil~g~~~~~~ 234 (287)
+.-..-++|+++++.++.+.-+
T Consensus 315 g~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 315 GASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 2223346788888888876543
No 107
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.63 E-value=38 Score=29.54 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=42.8
Q ss_pred HHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 177 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
...|..+..+++....+..---.++.-+++..+++.+++.++|+|+..+.+|++..-
T Consensus 101 slm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 101 SLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 333334555655555555555577888999999999999999999999999998754
No 108
>PRK02237 hypothetical protein; Provisional
Probab=76.70 E-value=17 Score=26.65 Aligned_cols=45 Identities=16% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136 39 FYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 83 (287)
Q Consensus 39 ~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~ 83 (287)
.+..=.....+...+-.+.+-++|++++.++|..++++|+.++..
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 334444556677777889999999999999999999999987654
No 109
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=76.30 E-value=15 Score=26.77 Aligned_cols=44 Identities=25% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136 40 YQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 83 (287)
Q Consensus 40 ~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~ 83 (287)
+..=.....+...+-.+.+-|+|++++.++|..++++|+.++..
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 34444556777778889999999999999999999999997764
No 110
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.64 E-value=16 Score=26.22 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=25.9
Q ss_pred HHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 53 LLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 53 l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
.++.+.+||++++..+.+.+++.+|+..+.
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 378899999999999999999998886543
No 111
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=75.03 E-value=3.8 Score=35.81 Aligned_cols=133 Identities=13% Similarity=0.081 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHH-HHHHhhcccc----CCc---cccccccchhHHHHHHHH
Q 023136 97 LLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLF-IIGPFLDGLL----TNK---NVFAFKYTPYVLFFIVLS 168 (287)
Q Consensus 97 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~ 168 (287)
+++.+||+-.-..+|..-++.+.+ +..+|-...+.+... +..+-++..- ... ... .+.++..+...+.+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~--qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL-~Q~n~~sv~~A~aG 78 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP--QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQL-SQANWPSVLFAMAG 78 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc--ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHH-hcCChHHHHHHHHh
Confidence 456778888777777666543222 234444434443322 2222222111 111 111 12233344455555
Q ss_pred HHHHHHHHHHHHHhhccc-----chhhHHHhhhhhHHHHHHHHHHhcCCCcc--hhhhhhHHHHHHHHHHHHHhhc
Q 023136 169 CLISVSVNFSTFLVIGKT-----SPVTYQVLGHLKTCLVLAFGYVLLHDPFS--WRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~l~~v~~~~~s~~~~~e~~~--~~~~~G~~lil~g~~~~~~~~~ 237 (287)
|++-...|+.....+... -|+..++ .-++.+.+.++. +++.+ ..-+.|...+++++++-...+.
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~gl----alVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ah~ 149 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGL----ALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAAAHK 149 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeecce----EEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHHHHh
Confidence 555545555544443322 2222222 222333333332 44554 2455688888888877655443
No 112
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=74.07 E-value=85 Score=30.06 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=22.5
Q ss_pred ccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 185 KTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 185 ~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
+..++...+..-..|+-+.++|.+.-.-.......++.+.++++.++....
T Consensus 343 Rv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~ 393 (524)
T PF05977_consen 343 RVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF 393 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444456666666665433333333333334444444444333
No 113
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=73.50 E-value=71 Score=30.03 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=20.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhc
Q 023136 214 FSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 214 ~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
++..|++.+.++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999987766544
No 114
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=72.61 E-value=29 Score=25.37 Aligned_cols=52 Identities=8% Similarity=0.103 Sum_probs=34.3
Q ss_pred ccccccchhHHHHHHhh-HHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136 30 LSLGFNSVGFYQMTKLA-IIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 30 ~al~~~~~~~~~~i~~~-~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~ 81 (287)
+|.+..+.+---+++=. +-..-+.++.+++||++++....|.+++++++..+
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 45555444433333322 22233457889999999999999999998887654
No 115
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=72.39 E-value=14 Score=29.92 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=39.2
Q ss_pred ceecchhhHHHHHHHhhhheeeee-------cCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 023136 60 RKKFSRNIQLSLVILLVGVGIATV-------TDLQLNVLGSVLSLLAVLTTCVAQIMTNTI 113 (287)
Q Consensus 60 ~e~~~~~~~~~~~l~~~G~~l~~~-------~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~ 113 (287)
++|+.+++.+.+.....-+++.+. .+.+..+--+.+.+++++..|+...+.|+.
T Consensus 156 sqr~~~~K~~lv~~~sm~lWi~v~i~t~~lPtslN~~L~pi~l~IiGav~lalRfylkkk~ 216 (226)
T COG4858 156 SQRPGTWKYLLVAVLSMLLWIAVMIATVFLPTSLNPQLPPIALTIIGAVILALRFYLKKKK 216 (226)
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHhhCCCcCCcCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888888777777666543 234445566888899999999988766654
No 116
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=71.99 E-value=1.2 Score=38.23 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred cccchhHHHHHHhhHHHHHHHHH-HHhccee-cchhhHHHHHHHhhhheeeeecCC--ccchHHHHHHHHHHH-HHHHHH
Q 023136 33 GFNSVGFYQMTKLAIIPCTILLE-TLFFRKK-FSRNIQLSLVILLVGVGIATVTDL--QLNVLGSVLSLLAVL-TTCVAQ 107 (287)
Q Consensus 33 ~~~~~~~~~~i~~~~pi~~~l~~-~l~~~e~-~~~~~~~~~~l~~~G~~l~~~~~~--~~~~~G~~l~l~s~~-~~a~~~ 107 (287)
+-.+-+-.+++.+...+.++++- .+++|+| +...-.++++++++-+++...-.. +.-+.|+++.+.+.+ ..++.
T Consensus 45 sd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW- 123 (381)
T PF05297_consen 45 SDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVW- 123 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-
Confidence 33444455566666655554433 3445544 777777777777766665543222 222356555444433 33332
Q ss_pred HHHHHHHhhcCCCHHHHHHHH
Q 023136 108 IMTNTIQKKFKVSSTQLLYQS 128 (287)
Q Consensus 108 v~~~~~~~~~~~~~~~~~~~~ 128 (287)
.+ -.+.++++.+-|+++.+.
T Consensus 124 ~Y-m~lLr~~GAs~WtiLaFc 143 (381)
T PF05297_consen 124 FY-MWLLRELGASFWTILAFC 143 (381)
T ss_dssp ---------------------
T ss_pred HH-HHHHHHhhhHHHHHHHHH
Confidence 22 335566676778877654
No 117
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=71.14 E-value=31 Score=25.11 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=33.1
Q ss_pred HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec
Q 023136 44 KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT 84 (287)
Q Consensus 44 ~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~ 84 (287)
.....+....-.++.-|.+++++.|+|..++++|+.++..+
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 34455666667788889999999999999999998877653
No 118
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=68.19 E-value=9.5 Score=31.97 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhh
Q 023136 13 AVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVG 77 (287)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G 77 (287)
.++.-+++..+-.+|.-...+-++...+.+...+.-....+.+.++++++.+...+.++++++..
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHH
Confidence 45556777778888888899999999999999999888888999999998888887776665443
No 119
>PLN02776 prenyltransferase
Probab=68.02 E-value=93 Score=28.02 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=25.8
Q ss_pred HHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchh
Q 023136 177 FSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWR 217 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~ 217 (287)
...|..+|+.++..+ .++..--.+..+.||.--.+.+++.
T Consensus 113 ~~vYt~lKR~t~~~~-~lG~~~Ga~ppL~Gw~Avtg~~~~~ 152 (341)
T PLN02776 113 AFVYTPLKQIHPANT-WVGAVVGAIPPLMGWAAASGQLDAG 152 (341)
T ss_pred HHHHHhHccCCchhH-HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 334444788877764 6666655566777777777776654
No 120
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=65.12 E-value=5.2 Score=29.15 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhHHH-HHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
..++|+.+ .-.++.+++.-++..+.+.+. +-+++.-.|+...+..+..|....+.++|..+.++|+.++.
T Consensus 54 ~Y~iPFll-NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 54 EYLIPFLL-NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHH-HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 33444433 334455666667777777655 44556788899999987777888999999999999998764
No 121
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=63.99 E-value=10 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 023136 203 LAFGYVLLHDPFSWRNILGILIAVIGMVL 231 (287)
Q Consensus 203 ~~~s~~~~~e~~~~~~~~G~~lil~g~~~ 231 (287)
..++.+.++|++++..+.|...++.++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 46788899999999999999999887653
No 122
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.73 E-value=58 Score=23.46 Aligned_cols=30 Identities=17% Similarity=0.528 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 203 LAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 203 ~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
..+|.+.++|++.+..+.|..++..|+...
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999998887654
No 123
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.17 E-value=5.5 Score=34.38 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHH
Q 023136 176 NFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~ 232 (287)
..+...++++.+-..+-+-..+..++++++++.+++++-+..-+.++.+|+.|..+-
T Consensus 116 I~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 116 ISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred hhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 344556688887777777778889999999999999999999999999999998764
No 124
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=61.13 E-value=1.2 Score=37.86 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 165 IVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
-++.++.-.-.|+....+.++++-+..+....-..++..+++|++++.+-.+.++.|.++.++|+.....
T Consensus 81 Yilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 81 YILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred hhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 3334444444577777778888888888888888899999999999999999999999999999876543
No 125
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=60.97 E-value=83 Score=25.00 Aligned_cols=62 Identities=13% Similarity=0.171 Sum_probs=37.3
Q ss_pred HHHHhcceecchhhHHHHHH-------HhhhheeeeecCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023136 54 LETLFFRKKFSRNIQLSLVI-------LLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQK 115 (287)
Q Consensus 54 ~~~l~~~e~~~~~~~~~~~l-------~~~G~~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~ 115 (287)
....+.|..++.++.+|+.+ .+.|+.++...+.....-..+.++.+++.+++-.++..-+++
T Consensus 88 ~Em~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRE 156 (193)
T COG4657 88 TEMVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRE 156 (193)
T ss_pred HHHHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 44556666788888877765 344555444433333344566677777777776666555554
No 126
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=60.38 E-value=42 Score=30.21 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=15.2
Q ss_pred chhhhhhHHHHHHHHHHHHHhhcc
Q 023136 215 SWRNILGILIAVIGMVLYSYCCSL 238 (287)
Q Consensus 215 ~~~~~~G~~lil~g~~~~~~~~~~ 238 (287)
.+..++..+++++.+.+....+++
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHh
Confidence 356677777777777666554444
No 127
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=54.98 E-value=1.3e+02 Score=25.55 Aligned_cols=49 Identities=8% Similarity=0.083 Sum_probs=27.1
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhhcchhhhcccccccCCCcccCCCCCcccccc
Q 023136 213 PFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAE 266 (287)
Q Consensus 213 ~~~~~~~~G~~lil~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (287)
-+...+=.++.++.+|++........... -+++..++.|.|.+..+-|+
T Consensus 182 iP~~~~G~pIafI~aGlmalAF~gf~G~~-----~~~~~~~~~~~~~~~~~~~~ 230 (244)
T PRK01061 182 VPKNLQGMGISFITTGLIAMAFMGLTGID-----ISKPSTSIQRAPLETAVVEN 230 (244)
T ss_pred CCccccchhHHHHHHHHHHHHHhcccCee-----ecCCCCccccCcccchhccc
Confidence 34455557788999998877665443222 12334445555555444443
No 128
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=54.35 E-value=35 Score=24.83 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=38.6
Q ss_pred hHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 190 TYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 190 ~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
...-.+-+-.+.++++.+.+=+..+|...++|..+.++|+.+..+.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3455666778889999999999999999999999999998876654
No 129
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=53.97 E-value=35 Score=26.47 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=19.9
Q ss_pred hcccchhhHHHhhhhhHHHHHHHHHHhc
Q 023136 183 IGKTSPVTYQVLGHLKTCLVLAFGYVLL 210 (287)
Q Consensus 183 ~~~~~~~~~s~~~~l~~v~~~~~s~~~~ 210 (287)
+..-+.+..+.+.|+-|++.++.+.+++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888887777776664
No 130
>PRK14397 membrane protein; Provisional
Probab=53.44 E-value=1.3e+02 Score=25.19 Aligned_cols=19 Identities=11% Similarity=0.270 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIM 109 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~ 109 (287)
.|--+++...++..+-.++
T Consensus 48 ~G~~~gilv~~~D~lKG~l 66 (222)
T PRK14397 48 CGTKWGVLTLVCDVLKGAV 66 (222)
T ss_pred hchHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 131
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=53.08 E-value=85 Score=27.14 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 023136 161 VLFFIVLSCLISVSVNFSTFLVIG 184 (287)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ 184 (287)
..-.+.-+.++....+.+.+...+
T Consensus 158 ~~~~F~~GI~cN~lVclAvwm~~~ 181 (265)
T COG2116 158 FLEAFAKGILCNWLVCLAVWMSYS 181 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444555555555555544
No 132
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.31 E-value=37 Score=26.58 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhcccccccchhHHH-HHHhhHHHHHHHHHHHh----cceecchhhHHHHHHHhhhheee
Q 023136 18 GVLNGISIGLLNLSLGFNSVGFYQ-MTKLAIIPCTILLETLF----FRKKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 18 ~~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~l~~~l~----~~e~~~~~~~~~~~l~~~G~~l~ 81 (287)
+++.....+........+.++..+ +...-+-+..+++..+= -++++++.+++|+++.++|+++.
T Consensus 76 G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 76 GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 455555555556666777666444 44555556666654321 23679999999999999995443
No 133
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=50.88 E-value=1.6e+02 Score=25.33 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhh
Q 023136 164 FIVLSCLISVSVNFSTFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNI 219 (287)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~ 219 (287)
..+.+.+.++.++......+++.+....-..+...-......++...+..++...+
T Consensus 109 ~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~~~~~ 164 (285)
T PRK12872 109 IFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLL 164 (285)
T ss_pred HHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 33444444444443322245554433332333333333334444444444454433
No 134
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=49.13 E-value=1.5e+02 Score=24.38 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=30.6
Q ss_pred ceecchhhHHHHHHHhhhheeeee-------cCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 023136 60 RKKFSRNIQLSLVILLVGVGIATV-------TDLQLNVLGSVLSLLAVLTTCVAQIMTNTI 113 (287)
Q Consensus 60 ~e~~~~~~~~~~~l~~~G~~l~~~-------~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~ 113 (287)
++|.++++.+.+.+....++++.. +..+..+-+....+++++.++++..+.||.
T Consensus 141 ~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 141 KKRPSWWKYILISVLAMVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666665555444444443321 122333446777788888888887666554
No 135
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=44.40 E-value=2.7e+02 Score=25.97 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHh
Q 023136 220 LGILIAVIGMVLYSYC 235 (287)
Q Consensus 220 ~G~~lil~g~~~~~~~ 235 (287)
++.+++++.++.|...
T Consensus 180 ~a~~v~l~~i~~~~~l 195 (437)
T TIGR00939 180 TPCVVQLICIVCYLLL 195 (437)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555433
No 136
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=44.14 E-value=1.8e+02 Score=23.84 Aligned_cols=18 Identities=6% Similarity=0.145 Sum_probs=8.8
Q ss_pred ccccccCCCCCCcccccc
Q 023136 261 PLINAEKGTGDGVAKAPA 278 (287)
Q Consensus 261 ~l~~~~~~~~~~~~~~~~ 278 (287)
.++++|++.....+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~ 185 (191)
T PRK14789 168 ELLSRDPSPPAATDARTS 185 (191)
T ss_pred HHHhcCCCCCCCCCcccc
Confidence 455566555444444433
No 137
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=43.76 E-value=40 Score=22.37 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHhhcc
Q 023136 217 RNILGILIAVIGMVLYSYCCSL 238 (287)
Q Consensus 217 ~~~~G~~lil~g~~~~~~~~~~ 238 (287)
.-++++.++++|.++|....++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3467888899999999876543
No 138
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=42.16 E-value=3.1e+02 Score=26.02 Aligned_cols=64 Identities=16% Similarity=0.205 Sum_probs=38.0
Q ss_pred HHHHHhcceecch-------hhHHHHHHHhhhheeeeecCC--------ccc---h-HHHHHHHHHHHHHHHHHHHHHHH
Q 023136 53 LLETLFFRKKFSR-------NIQLSLVILLVGVGIATVTDL--------QLN---V-LGSVLSLLAVLTTCVAQIMTNTI 113 (287)
Q Consensus 53 l~~~l~~~e~~~~-------~~~~~~~l~~~G~~l~~~~~~--------~~~---~-~G~~l~l~s~~~~a~~~v~~~~~ 113 (287)
+...+++++|..+ .+-=.+..++.|..++-.+-. ..+ . ...+-..+|+++-++..++.+++
T Consensus 202 l~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWfGWl~FN~GS~~~i~~~~~~~a~vnT~Ls~a~gglt~~~~d~~ 281 (500)
T KOG0682|consen 202 LVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWFGWLGFNGGSFYAINLRSWARAAVNTILSGATGGLTWLIIDYL 281 (500)
T ss_pred HHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHHHHHccCCcccccccchhHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 3444556666553 444566677777776643211 111 2 34556677888888888888887
Q ss_pred Hhh
Q 023136 114 QKK 116 (287)
Q Consensus 114 ~~~ 116 (287)
..+
T Consensus 282 ~~~ 284 (500)
T KOG0682|consen 282 RHG 284 (500)
T ss_pred hcC
Confidence 763
No 139
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=41.18 E-value=46 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=13.2
Q ss_pred CCCcchhhh----hhHHHHHHHHHHHHHh
Q 023136 211 HDPFSWRNI----LGILIAVIGMVLYSYC 235 (287)
Q Consensus 211 ~e~~~~~~~----~G~~lil~g~~~~~~~ 235 (287)
-|..+++++ +.++++++|+++....
T Consensus 29 ~ED~tpWNysiL~Ls~vvlvi~~~LLgrs 57 (125)
T PF15048_consen 29 VEDATPWNYSILALSFVVLVISFFLLGRS 57 (125)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 466666544 3445555666555433
No 140
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=40.94 E-value=36 Score=23.80 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=20.9
Q ss_pred CcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 213 PFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 213 ~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
.+++..++|.++++.|..+|.....
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~ 28 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFF 28 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999976443
No 141
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=40.73 E-value=29 Score=23.12 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhcchhhhccc
Q 023136 222 ILIAVIGMVLYSYCCSLESQQKAS 245 (287)
Q Consensus 222 ~~lil~g~~~~~~~~~~~~~~~~~ 245 (287)
+++.+++.+...+.|.++.|++..
T Consensus 42 i~~~~lt~ltN~YFK~k~drr~~a 65 (68)
T PF04971_consen 42 IFFGLLTYLTNLYFKIKEDRRKAA 65 (68)
T ss_pred HHHHHHHHHhHhhhhhhHhhhHhh
Confidence 444555556566666666555443
No 142
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=38.56 E-value=4.4e+02 Score=26.72 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=31.7
Q ss_pred hHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheee
Q 023136 38 GFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 38 ~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~ 81 (287)
+.+.++..+.|.-.+.++.....+|.+.+.+.+.+..++|.+-+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45577888899999988888777775555566666777776643
No 143
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=38.52 E-value=71 Score=27.83 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=44.0
Q ss_pred cccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeecCC
Q 023136 33 GFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVTDL 86 (287)
Q Consensus 33 ~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~ 86 (287)
+.-.+..+..+...---.|.+++++++.++++....-+.++++.|+.+=..++.
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 334566667777777889999999999999999999999999999987766543
No 144
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=36.62 E-value=65 Score=25.65 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=5.9
Q ss_pred ccCCCCCcc
Q 023136 254 VKEGETDPL 262 (287)
Q Consensus 254 ~~~~~~~~l 262 (287)
.++.|..|+
T Consensus 136 ~~~~Em~pL 144 (163)
T PF06679_consen 136 AENVEMAPL 144 (163)
T ss_pred cccceeccc
Confidence 456677777
No 145
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=35.54 E-value=1.1e+02 Score=19.41 Aligned_cols=44 Identities=11% Similarity=0.186 Sum_probs=32.8
Q ss_pred hHHHHHHHhhhheeeeecCCccchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023136 67 IQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNTIQK 115 (287)
Q Consensus 67 ~~~~~~l~~~G~~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~~~~ 115 (287)
..+|..+.++|++++..++. |.+..+++....|......|+..+
T Consensus 5 ~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46788899999998877642 566677777777777777777665
No 146
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=35.19 E-value=1.3e+02 Score=24.03 Aligned_cols=35 Identities=9% Similarity=0.249 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHHHHHHHHhh
Q 023136 104 CVAQIMTNTIQKKFKVSSTQLLYQSCPYQALTLFIIGPFL 143 (287)
Q Consensus 104 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (287)
=+|.++.||.. +++.-..|-..+-+++..++.|+.
T Consensus 86 llY~~~l~k~~-----g~W~Gi~YG~~~W~ivF~~lnP~f 120 (173)
T PF11085_consen 86 LLYYALLKKFK-----GPWPGILYGLAWWAIVFFVLNPIF 120 (173)
T ss_pred HHHHHHHHHhc-----ccchHHHHHHHHHHHHHHHhcccc
Confidence 34555555543 455555554433333343333433
No 147
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=35.00 E-value=2.9e+02 Score=23.77 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=61.2
Q ss_pred HHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHH-HHH-hcce---e--cchhhHHHHHHHhhhheeeee--cCC---
Q 023136 19 VLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILL-ETL-FFRK---K--FSRNIQLSLVILLVGVGIATV--TDL--- 86 (287)
Q Consensus 19 ~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~-~~l-~~~e---~--~~~~~~~~~~l~~~G~~l~~~--~~~--- 86 (287)
++.+.+..+....++.+..+...++-++.-+.+--+ +.+ +++. . -.+..++|++++++|..+... .+.
T Consensus 63 ~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~ 142 (254)
T PF07857_consen 63 ALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEP 142 (254)
T ss_pred hhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCc
Confidence 333444444455779999999999998865555433 222 3432 2 345678899999999887754 110
Q ss_pred ------------------------------c------cchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023136 87 ------------------------------Q------LNVLGSVLSLLAVLTTCVAQIMTNTIQKK 116 (287)
Q Consensus 87 ------------------------------~------~~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 116 (287)
+ ....|.+++++++++|+...+=.+++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 143 KKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred cccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 0 12357777777777777766666665553
No 148
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.89 E-value=52 Score=28.79 Aligned_cols=13 Identities=8% Similarity=0.235 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhh
Q 023136 104 CVAQIMTNTIQKK 116 (287)
Q Consensus 104 a~~~v~~~~~~~~ 116 (287)
++=-.+.+|..|+
T Consensus 179 afPElYfQK~Kke 191 (374)
T KOG1608|consen 179 AFPELYFQKTKKE 191 (374)
T ss_pred HChHHHHHHHhhh
Confidence 4444566666654
No 149
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=34.60 E-value=3.9e+02 Score=24.97 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=16.0
Q ss_pred hhhhhHHHHHHHHHHHHHhhc
Q 023136 217 RNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 217 ~~~~G~~lil~g~~~~~~~~~ 237 (287)
....|.+++++|..+|.+.++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999988887544
No 150
>PF15471 TMEM171: Transmembrane protein family 171
Probab=34.56 E-value=40 Score=28.97 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.2
Q ss_pred cchhhhhhHHHHHHHHHHHHHhhcchh
Q 023136 214 FSWRNILGILIAVIGMVLYSYCCSLES 240 (287)
Q Consensus 214 ~~~~~~~G~~lil~g~~~~~~~~~~~~ 240 (287)
+-..|+.|-+++++|.+.+..++.+++
T Consensus 159 FLslQImGPlIVl~GLCFFVVAHvKKr 185 (319)
T PF15471_consen 159 FLSLQIMGPLIVLVGLCFFVVAHVKKR 185 (319)
T ss_pred eeehhhhhhHHHHHhhhhhheeeeeec
Confidence 345789999999999999887765544
No 151
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=34.37 E-value=38 Score=20.87 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHhhcchhh
Q 023136 219 ILGILIAVIGMVLYSYCCSLESQ 241 (287)
Q Consensus 219 ~~G~~lil~g~~~~~~~~~~~~~ 241 (287)
++-+.++.+|+++|.+.+.++++
T Consensus 16 l~~~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcchh
Confidence 33457888999999887655443
No 152
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=34.27 E-value=2.2e+02 Score=22.04 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023136 89 NVLGSVLSLLAVLTTCVAQIMTNTIQKK 116 (287)
Q Consensus 89 ~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 116 (287)
...+.+..+++++.|.-|....||.++.
T Consensus 119 ~i~~l~~~li~a~IwipYf~~S~RVK~T 146 (149)
T PF10754_consen 119 AIRELLRSLIAAAIWIPYFLRSKRVKNT 146 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhh
Confidence 3568888999999999999988887653
No 153
>PHA03049 IMV membrane protein; Provisional
Probab=34.10 E-value=64 Score=21.33 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHHHHhhc
Q 023136 218 NILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 218 ~~~G~~lil~g~~~~~~~~~ 237 (287)
.++++.++++|.++|....+
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45677888889998876644
No 154
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=33.16 E-value=4.4e+02 Score=25.22 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHhhcccchhhHHHhhhhhHHHHHHHHHH
Q 023136 178 STFLVIGKTSPVTYQVLGHLKTCLVLAFGYV 208 (287)
Q Consensus 178 ~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~ 208 (287)
+.+...+..+.-..+++--++..++.++-.+
T Consensus 374 a~~~iA~~L~~~~~aLvFGiNtfvAl~LQti 404 (511)
T TIGR00806 374 ATFQIASSLSKELCALVFGINTFVATALKTI 404 (511)
T ss_pred HHHHHHHHhcccceEEEEecHHHHHHHHHHh
Confidence 3333345555444455445555555555433
No 155
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=32.79 E-value=87 Score=27.74 Aligned_cols=75 Identities=13% Similarity=0.345 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhhc
Q 023136 163 FFIVLSCLISVSVNF-STFLVIGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCCS 237 (287)
Q Consensus 163 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~ 237 (287)
+.-+..+.++..... ...+.++++.-..+.++-.-.+++..++|.++-=|++++....=..+|-+|+.++++++.
T Consensus 84 Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 84 LRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred HHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 333444444444333 333446666555666666677889999999888899998888777777777777666544
No 156
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=32.13 E-value=3.5e+02 Score=23.67 Aligned_cols=32 Identities=13% Similarity=0.109 Sum_probs=18.3
Q ss_pred HHHHHHHHHh--cceecchhhHHHHHHHhhhhee
Q 023136 49 PCTILLETLF--FRKKFSRNIQLSLVILLVGVGI 80 (287)
Q Consensus 49 i~~~l~~~l~--~~e~~~~~~~~~~~l~~~G~~l 80 (287)
+..++++++- .+++..+.-|.|++.+++..++
T Consensus 21 IV~illa~L~k~~~~~~~~~V~~G~~~gl~~s~~ 54 (283)
T TIGR00145 21 VVSVLLSYLKRAQRTRLRGWVWVGVLAGFAACLA 54 (283)
T ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHH
Confidence 3444455554 3455666677777766665543
No 157
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=31.57 E-value=1.5e+02 Score=27.05 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=25.1
Q ss_pred HHHhhHHHHHHHHHHHhcceecchh-hHHHHHHHhhhheeeeec
Q 023136 42 MTKLAIIPCTILLETLFFRKKFSRN-IQLSLVILLVGVGIATVT 84 (287)
Q Consensus 42 ~i~~~~pi~~~l~~~l~~~e~~~~~-~~~~~~l~~~G~~l~~~~ 84 (287)
.++.+..-+.. +-.+..-++.+.. ++.++.+++.=..+++.+
T Consensus 164 t~natais~~~-~~~ls~~d~~s~p~~~lgl~lv~~y~~lv~lg 206 (407)
T KOG2822|consen 164 TMNATAISFYF-FLVLSTMDRESYPIQYLGLSLVLLYYALVCLG 206 (407)
T ss_pred hhhhhHHHHHH-HHHHHHhchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 3344455777766 888888777776666554
No 158
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=31.13 E-value=78 Score=24.03 Aligned_cols=23 Identities=30% Similarity=0.128 Sum_probs=13.5
Q ss_pred hhhHHHhhhhhHHHHHHHHHHhc
Q 023136 188 PVTYQVLGHLKTCLVLAFGYVLL 210 (287)
Q Consensus 188 ~~~~s~~~~l~~v~~~~~s~~~~ 210 (287)
....+.+.|+-|++.++.+.++-
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666776666665543
No 159
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=31.11 E-value=1.2e+02 Score=25.12 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhcc
Q 023136 222 ILIAVIGMVLYSYCCSL 238 (287)
Q Consensus 222 ~~lil~g~~~~~~~~~~ 238 (287)
+++++++...|...++|
T Consensus 112 lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRR 128 (202)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 56666666666555444
No 160
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=30.83 E-value=2.4e+02 Score=21.41 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 198 KTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 198 ~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
|-++-+++|.+.+++ --...++|..+.+.|++....
T Consensus 70 RGlfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l 105 (136)
T PF08507_consen 70 RGLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYIIL 105 (136)
T ss_pred HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777 233345788888888765543
No 161
>PF15345 TMEM51: Transmembrane protein 51
Probab=30.24 E-value=62 Score=27.22 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHhhcchhhhc
Q 023136 220 LGILIAVIGMVLYSYCCSLESQQK 243 (287)
Q Consensus 220 ~G~~lil~g~~~~~~~~~~~~~~~ 243 (287)
.|.++.++++++-...|+++.+..
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~~ 90 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQGE 90 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 478888888888776666554433
No 162
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=30.21 E-value=61 Score=20.68 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHh
Q 023136 222 ILIAVIGMVLYSYC 235 (287)
Q Consensus 222 ~~lil~g~~~~~~~ 235 (287)
++++++|+++-+..
T Consensus 8 IIviVlgvIigNia 21 (55)
T PF11446_consen 8 IIVIVLGVIIGNIA 21 (55)
T ss_pred HHHHHHHHHHhHHH
Confidence 45566666665543
No 163
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=29.38 E-value=4.2e+02 Score=23.75 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 023136 224 IAVIGMVLYS 233 (287)
Q Consensus 224 lil~g~~~~~ 233 (287)
++++-.++|.
T Consensus 236 l~~~~~l~~~ 245 (340)
T PF12794_consen 236 LLLGWLLVYQ 245 (340)
T ss_pred HHHHHHHHHH
Confidence 3333334443
No 164
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=29.35 E-value=26 Score=30.45 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=32.0
Q ss_pred HHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeee
Q 023136 41 QMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIAT 82 (287)
Q Consensus 41 ~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~ 82 (287)
++....--.+..+++...++.+++++.|+|..+.++|.++..
T Consensus 272 TlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 272 TLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred EEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 344445567777888888888888888888888888887664
No 165
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=29.10 E-value=28 Score=20.94 Aligned_cols=19 Identities=11% Similarity=0.483 Sum_probs=9.6
Q ss_pred cchhhhhhHHHHHHHHHHH
Q 023136 214 FSWRNILGILIAVIGMVLY 232 (287)
Q Consensus 214 ~~~~~~~G~~lil~g~~~~ 232 (287)
++|...+=.++|++|++.|
T Consensus 2 p~wlt~iFsvvIil~If~~ 20 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAW 20 (49)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3455555445555555433
No 166
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=28.78 E-value=1.3e+02 Score=22.10 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHH
Q 023136 194 LGHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVL 231 (287)
Q Consensus 194 ~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~ 231 (287)
.+.+.-.++.+.+..+--|...-..++|..+++.|+.+
T Consensus 85 ~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 85 TNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred cchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 44456677888888666567777889999999999875
No 167
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=28.28 E-value=5.4e+02 Score=24.65 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=45.0
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHh--cceecchhhHHHHHHHhhhheeeeecCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 023136 35 NSVGFYQMTKLAIIPCTILLETLF--FRKKFSRNIQLSLVILLVGVGIATVTDLQLNVLGSVLSLLAVLTTCVAQIMTNT 112 (287)
Q Consensus 35 ~~~~~~~~i~~~~pi~~~l~~~l~--~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~~~G~~l~l~s~~~~a~~~v~~~~ 112 (287)
.++..+.++..+.-+-.++.+.+. ++++++..+++.......|+.++..+-....+...+..++.++++...++....
T Consensus 251 ~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t 330 (524)
T PF05977_consen 251 GGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNT 330 (524)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677766666655544443 456777777766666666665444332222333444455556666665555444
Q ss_pred HHh
Q 023136 113 IQK 115 (287)
Q Consensus 113 ~~~ 115 (287)
..|
T Consensus 331 ~~Q 333 (524)
T PF05977_consen 331 LVQ 333 (524)
T ss_pred HHH
Confidence 444
No 168
>PRK08238 hypothetical protein; Validated
Probab=28.14 E-value=5.2e+02 Score=24.47 Aligned_cols=21 Identities=14% Similarity=0.070 Sum_probs=15.2
Q ss_pred eecchhhHHHHHHHhhhheee
Q 023136 61 KKFSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 61 e~~~~~~~~~~~l~~~G~~l~ 81 (287)
|-.+.+||...++.+.+.+..
T Consensus 196 ~l~Rp~q~~kn~l~~~p~l~a 216 (479)
T PRK08238 196 KALRVHQWAKNLLVFVPLLAA 216 (479)
T ss_pred HHhCCcHHHHHHHHHHHHHHh
Confidence 345677888888888877654
No 169
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=27.93 E-value=4.8e+02 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.476 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHhhcc
Q 023136 219 ILGILIAVIGMVLYSYCCSL 238 (287)
Q Consensus 219 ~~G~~lil~g~~~~~~~~~~ 238 (287)
+.+..++++|..+|...+++
T Consensus 418 ~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 418 ICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred HHHHHHHHHhhhHHhheech
Confidence 36888888999988765544
No 170
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=26.36 E-value=2.5e+02 Score=29.37 Aligned_cols=32 Identities=28% Similarity=0.681 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 201 LVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 201 ~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
.+.+++.+++|.+++...++| .+.++|+++.+
T Consensus 901 ~G~~~~l~i~g~~l~~~s~iG-~i~L~GIvVnN 932 (1021)
T PF00873_consen 901 IGVLLGLFITGQPLSFMSLIG-IIALIGIVVNN 932 (1021)
T ss_dssp HHHHHHHHHTTBEBSHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccceeh-HHHHHHHHHhh
Confidence 667888899999999999999 67788887754
No 171
>COG1971 Predicted membrane protein [Function unknown]
Probab=26.00 E-value=1.1e+02 Score=24.95 Aligned_cols=41 Identities=15% Similarity=0.374 Sum_probs=26.2
Q ss_pred hhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHH-HHHHH
Q 023136 189 VTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILI-AVIGM 229 (287)
Q Consensus 189 ~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~l-il~g~ 229 (287)
...+++..+.|++....+.++-+-.-.+.+|+|.++ ++.|.
T Consensus 41 ~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~ 82 (190)
T COG1971 41 LIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGL 82 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667788888877776655566778776543 33443
No 172
>PLN02776 prenyltransferase
Probab=25.94 E-value=4.9e+02 Score=23.45 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=23.3
Q ss_pred hcceecchhhHHHHHHHhhhheeee-ecCCccchHHHHHHHHHHHHHHH
Q 023136 58 FFRKKFSRNIQLSLVILLVGVGIAT-VTDLQLNVLGSVLSLLAVLTTCV 105 (287)
Q Consensus 58 ~~~e~~~~~~~~~~~l~~~G~~l~~-~~~~~~~~~G~~l~l~s~~~~a~ 105 (287)
.+|++..+..++|.+.+-.+.++-- .-..+.+. +-.+.+...++|..
T Consensus 118 ~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~-~~~~Lf~~~~~Wq~ 165 (341)
T PLN02776 118 PLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDA-GAMVLAAALYFWQM 165 (341)
T ss_pred hHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHH
Confidence 4677766666666665533332211 11223343 33445566666666
No 173
>PLN02822 serine palmitoyltransferase
Probab=25.54 E-value=50 Score=31.17 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=36.7
Q ss_pred HHHhcCCCcchhhhhhHHHHHHHHHHHHHhhcchhhhcccccccCCCcccCCCCCccccccC
Q 023136 206 GYVLLHDPFSWRNILGILIAVIGMVLYSYCCSLESQQKASETSSQLPQVKEGETDPLINAEK 267 (287)
Q Consensus 206 s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (287)
...+||.+...+.++=.++++..+.++..++++.+++ +-.+.+-...-.+.+.+|++++.+
T Consensus 26 ~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~p~~l~~~~~ 86 (481)
T PLN02822 26 RAVVFGVHIGGHLVVEGLLIVVIVFLLSQKSYKPPKR-PLTEKEIDELCDEWTPEPLIPPIT 86 (481)
T ss_pred ceeEeecCCCchhHHHHHHHHHHHHHHHcCcCCCCCC-CCCHHHHHHHHhcCCCCCCCCCCc
Confidence 3458999999999999888888887766544433322 111111111225567777775533
No 174
>PRK14774 lipoprotein signal peptidase; Provisional
Probab=25.06 E-value=1.4e+02 Score=24.29 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=7.4
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 023136 216 WRNILGILIAVIGMVLYS 233 (287)
Q Consensus 216 ~~~~~G~~lil~g~~~~~ 233 (287)
..+++=+.+ .+|+++..
T Consensus 131 vFNvAD~~I-~iGv~lli 147 (185)
T PRK14774 131 AFNVADIAI-FAGAFGLV 147 (185)
T ss_pred EEEHHHHHH-HHHHHHHH
Confidence 344445443 44444333
No 175
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=25.02 E-value=1.4e+02 Score=23.42 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=9.0
Q ss_pred hHHHhhhhhHHHHHHHHH
Q 023136 190 TYQVLGHLKTCLVLAFGY 207 (287)
Q Consensus 190 ~~s~~~~l~~v~~~~~s~ 207 (287)
..+.+.|+-|++.++.+.
T Consensus 76 kaa~lvYllPLl~li~ga 93 (154)
T PRK10862 76 RSALLVYMTPLVGLFLGA 93 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 176
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=24.81 E-value=66 Score=24.65 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=25.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023136 87 QLNVLGSVLSLLAVLTTCVAQIMTNTIQKK 116 (287)
Q Consensus 87 ~~~~~G~~l~l~s~~~~a~~~v~~~~~~~~ 116 (287)
+.+.+|.++.-.=++.|++|.++.+.+.++
T Consensus 102 sn~~LgwIL~gVf~lIWslY~~~~~~l~ed 131 (138)
T PF07123_consen 102 SNNLLGWILLGVFGLIWSLYFVYTSTLDED 131 (138)
T ss_pred cCchhHHHHHHHHHHHHHHHHhhccccCCC
Confidence 456789999999999999999999987653
No 177
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=24.56 E-value=1e+02 Score=21.54 Aligned_cols=21 Identities=19% Similarity=0.529 Sum_probs=15.7
Q ss_pred chhhhhhHHHHHHHHHHHHHh
Q 023136 215 SWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 215 ~~~~~~G~~lil~g~~~~~~~ 235 (287)
+...++|..+.++|..++...
T Consensus 3 N~~Fl~~l~lliig~~~~v~~ 23 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVFQ 23 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 445678888888888887644
No 178
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.11 E-value=85 Score=19.18 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHhhcc
Q 023136 220 LGILIAVIGMVLYSYCCSL 238 (287)
Q Consensus 220 ~G~~lil~g~~~~~~~~~~ 238 (287)
+-+.++++|++++.+.+++
T Consensus 16 v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHcccc
Confidence 3446677788888876554
No 179
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=23.55 E-value=4.1e+02 Score=21.72 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHhh
Q 023136 203 LAFGYVLLHDPFSWRNILGILIAVIGMVLYSYCC 236 (287)
Q Consensus 203 ~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~~ 236 (287)
-.+|..+|++..=+..++|..+.++=+......+
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~ 166 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR 166 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4457777777777777777766655444444433
No 180
>PRK09776 putative diguanylate cyclase; Provisional
Probab=22.98 E-value=8.7e+02 Score=25.27 Aligned_cols=23 Identities=4% Similarity=0.209 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023136 92 GSVLSLLAVLTTCVAQIMTNTIQ 114 (287)
Q Consensus 92 G~~l~l~s~~~~a~~~v~~~~~~ 114 (287)
..+++++..+...+...+.++..
T Consensus 71 ~~~~~~~~~~~~~~~~~ll~~~~ 93 (1092)
T PRK09776 71 NLTWTTINLVEAVVGAVLLRKLL 93 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555554555545555544
No 181
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.43 E-value=2.3e+02 Score=25.51 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 023136 199 TCLVLAFGY 207 (287)
Q Consensus 199 ~v~~~~~s~ 207 (287)
|++..+++-
T Consensus 112 pi~~~l~g~ 120 (385)
T PF03547_consen 112 PILQALFGE 120 (385)
T ss_pred HHHHHHhcc
Confidence 444444443
No 182
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.39 E-value=3.3e+02 Score=20.13 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCC-CcchhhhhhHHHHHHHHHHHH
Q 023136 199 TCLVLAFGYVLLHD-PFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 199 ~v~~~~~s~~~~~e-~~~~~~~~G~~lil~g~~~~~ 233 (287)
.++.+.++|++=+- .-+++.++.+.++=.|..+.+
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~ln 91 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLN 91 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 34555566654322 234455554444433333333
No 183
>PF15102 TMEM154: TMEM154 protein family
Probab=21.99 E-value=76 Score=24.68 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHhhcch
Q 023136 220 LGILIAVIGMVLYSYCCSLE 239 (287)
Q Consensus 220 ~G~~lil~g~~~~~~~~~~~ 239 (287)
++.++++..++++.+.|+++
T Consensus 67 LLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHHHHheeEEeecc
Confidence 34455555566665554433
No 184
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=21.99 E-value=5.5e+02 Score=22.56 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=12.5
Q ss_pred cchhhHHHHHHHhhhheee
Q 023136 63 FSRNIQLSLVILLVGVGIA 81 (287)
Q Consensus 63 ~~~~~~~~~~l~~~G~~l~ 81 (287)
.+.++|...++.++|.+..
T Consensus 18 ~RP~~w~~nll~~~~~~~a 36 (295)
T PRK12324 18 LRPKQWIKNLFVFAAPIFA 36 (295)
T ss_pred hCchHHHHHHHHHHHHHHH
Confidence 4566787777777776443
No 185
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=21.95 E-value=6.3e+02 Score=23.26 Aligned_cols=12 Identities=17% Similarity=-0.097 Sum_probs=5.0
Q ss_pred hhhHHHHHHHHH
Q 023136 219 ILGILIAVIGMV 230 (287)
Q Consensus 219 ~~G~~lil~g~~ 230 (287)
+++.++.+++.+
T Consensus 404 ~~~~~~~li~~~ 415 (455)
T TIGR00892 404 YASGSIVVSAGL 415 (455)
T ss_pred HHhhHHHHHHHH
Confidence 343344444443
No 186
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=21.79 E-value=4.9e+02 Score=21.91 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=29.5
Q ss_pred CCCCchhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHH
Q 023136 7 KPFDPRAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTIL 53 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l 53 (287)
.+..+|..+.++..|.....+...-..+.+....+.+....+..-.+
T Consensus 27 s~ls~k~~~~i~~~Y~~l~~~l~~i~~~~~~~~~~~i~~yg~~~h~i 73 (224)
T PF09930_consen 27 SNLSRKEIALIALGYGLLFLLLGYIASPINMEIYEFILRYGMVIHLI 73 (224)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Confidence 45678888888887776666666555666555555555554444444
No 187
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=21.12 E-value=1.8e+02 Score=26.67 Aligned_cols=20 Identities=35% Similarity=0.768 Sum_probs=11.4
Q ss_pred CcchhhhhhHHHHHHHHHHHH
Q 023136 213 PFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 213 ~~~~~~~~G~~lil~g~~~~~ 233 (287)
..+...++|.++.+.- ++|.
T Consensus 295 ~~~~~~iiGli~~~lc-ilYs 314 (426)
T KOG2592|consen 295 TFDATNIIGLIFLLLC-ILYS 314 (426)
T ss_pred cccccchHHHHHHHHH-HHHH
Confidence 4455668886555554 4454
No 188
>PRK15049 L-asparagine permease; Provisional
Probab=20.96 E-value=4.8e+02 Score=24.69 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=7.0
Q ss_pred CCCCchhHHHHHHHH
Q 023136 7 KPFDPRAVMGFGVLN 21 (287)
Q Consensus 7 ~~~~~~~~~~~~~~~ 21 (287)
.+.|.+.++..+++.
T Consensus 349 ~~~P~~Ail~~~~i~ 363 (499)
T PRK15049 349 QHVPYAGILATLVVY 363 (499)
T ss_pred CCCCHHHHHHHHHHH
Confidence 344555554444443
No 189
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=20.72 E-value=7.6e+02 Score=23.71 Aligned_cols=25 Identities=8% Similarity=0.169 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHhhcchhhhc
Q 023136 219 ILGILIAVIGMVLYSYCCSLESQQK 243 (287)
Q Consensus 219 ~~G~~lil~g~~~~~~~~~~~~~~~ 243 (287)
|-....++.=++.+.|.+.+.+++-
T Consensus 425 W~~l~~~iLvvI~~LWrPS~nn~ry 449 (518)
T KOG2568|consen 425 WPLLFFLILVVIMFLWRPSQNNQRY 449 (518)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCccc
Confidence 3344455555566777766655543
No 190
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=20.56 E-value=3.4e+02 Score=28.47 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHH
Q 023136 201 LVLAFGYVLLHDPFSWRNILGILIAVIGMVLYS 233 (287)
Q Consensus 201 ~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~ 233 (287)
++.+++.+++|.+++...++| +++++|+++.+
T Consensus 889 ~G~~~~L~l~g~~l~~~s~iG-~i~L~GIvvnN 920 (1025)
T PRK10614 889 VGALLALELFNAPFSLIALIG-IMLLIGIVKKN 920 (1025)
T ss_pred HHHHHHHHHHCCCccHHHHHH-HHHHHHHHHcC
Confidence 566788888899999999988 67788887643
No 191
>PRK14417 membrane protein; Provisional
Probab=20.46 E-value=4.1e+02 Score=22.49 Aligned_cols=24 Identities=4% Similarity=0.025 Sum_probs=17.4
Q ss_pred cccccCCCCCCcccccccCCCCCC
Q 023136 262 LINAEKGTGDGVAKAPAWNSNKDL 285 (287)
Q Consensus 262 l~~~~~~~~~~~~~~~~~~~~~~~ 285 (287)
..|+|.+|+..+-.|+..+++|.+
T Consensus 207 ~~dr~~~~~~~~~~~~~~~~~~~~ 230 (232)
T PRK14417 207 FLDRDIRDRSVWINRNSAAHKESL 230 (232)
T ss_pred HhcCCchhhhhhhcccccccccCC
Confidence 457777777777777777777765
Done!