Query 023136
Match_columns 287
No_of_seqs 121 out of 1531
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 16:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.7 3.6E-08 1.2E-12 75.1 6.6 60 176-235 44-104 (137)
2 3b5d_A Multidrug transporter E 98.4 2.8E-07 9.7E-12 67.6 5.9 70 15-84 34-104 (110)
3 2i68_A Protein EMRE; transmemb 98.4 2.1E-07 7.2E-12 70.8 3.8 69 15-83 34-103 (137)
4 3b5d_A Multidrug transporter E 98.2 4E-05 1.4E-09 56.0 12.3 58 177-234 45-103 (110)
5 3l1l_A Arginine/agmatine antip 57.3 31 0.0011 30.3 7.7 23 217-239 409-431 (445)
6 3rko_J NADH-quinone oxidoreduc 49.4 90 0.0031 24.2 9.9 33 203-235 127-159 (184)
7 3b9w_A Ammonium transporter fa 43.5 1.7E+02 0.0059 25.8 15.2 42 183-225 288-329 (407)
8 4djk_A Probable glutamate/gamm 37.3 1.6E+02 0.0053 26.2 9.1 15 21-35 138-152 (511)
9 2jo1_A Phospholemman; FXYD1, N 28.0 80 0.0027 20.2 3.7 21 219-239 22-42 (72)
10 2zxe_G FXYD10, phospholemman-l 24.8 40 0.0014 21.9 1.9 22 219-240 25-46 (74)
11 4fc4_A Nitrite transporter NIR 20.7 3.5E+02 0.012 22.1 8.3 17 121-137 104-120 (261)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.67 E-value=3.6e-08 Score=75.12 Aligned_cols=60 Identities=7% Similarity=0.169 Sum_probs=42.8
Q ss_pred HHHHHHhhcccchhhHHHh-hhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 176 NFSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 176 ~~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
.++....+++.++..+..+ ..+.|+++.++|+++|||++++.+++|+++|++|+++.+..
T Consensus 44 ~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4555666899998888777 89999999999999999999999999999999999998754
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.44 E-value=2.8e-07 Score=67.61 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeeec
Q 023136 15 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATVT 84 (287)
Q Consensus 15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~ 84 (287)
+...+++++++.+...+++++|.+.+..+ ..+.|+++++++++++||++++.|++|+.++++|++++...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 33355678889999999999999999888 89999999999999999999999999999999999977653
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.37 E-value=2.1e-07 Score=70.83 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhhcccccccchhHHHHH-HhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhheeeee
Q 023136 15 MGFGVLNGISIGLLNLSLGFNSVGFYQMT-KLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGVGIATV 83 (287)
Q Consensus 15 ~~~~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~~l~~~ 83 (287)
+...+++++++++.+.+++++|++.+..+ .++.|++++++++++++|++++.+++|++++++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34455678899999999999999988888 8999999999999999999999999999999999998754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.18 E-value=4e-05 Score=55.99 Aligned_cols=58 Identities=7% Similarity=0.201 Sum_probs=49.9
Q ss_pred HHHHHhhcccchhhHHHh-hhhhHHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHH
Q 023136 177 FSTFLVIGKTSPVTYQVL-GHLKTCLVLAFGYVLLHDPFSWRNILGILIAVIGMVLYSY 234 (287)
Q Consensus 177 ~~~~~~~~~~~~~~~s~~-~~l~~v~~~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~ 234 (287)
+.....+++.+...+..+ ..+.|+.+.++++++|||++|+.+++|..+|++|+++.+.
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344455888877777666 7899999999999999999999999999999999998764
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=57.32 E-value=31 Score=30.29 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHHHhhcch
Q 023136 217 RNILGILIAVIGMVLYSYCCSLE 239 (287)
Q Consensus 217 ~~~~G~~lil~g~~~~~~~~~~~ 239 (287)
..+.|..++++|..+|.+.++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 34568888999999988765543
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=49.41 E-value=90 Score=24.23 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCcchhhhhhHHHHHHHHHHHHHh
Q 023136 203 LAFGYVLLHDPFSWRNILGILIAVIGMVLYSYC 235 (287)
Q Consensus 203 ~~~s~~~~~e~~~~~~~~G~~lil~g~~~~~~~ 235 (287)
-.+|..+|++.+=+..+++..+.++=+.-....
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLa 159 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVG 159 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999998899999977766544444443
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=43.51 E-value=1.7e+02 Score=25.77 Aligned_cols=42 Identities=14% Similarity=0.004 Sum_probs=24.0
Q ss_pred hcccchhhHHHhhhhhHHHHHHHHHHhcCCCcchhhhhhHHHH
Q 023136 183 IGKTSPVTYQVLGHLKTCLVLAFGYVLLHDPFSWRNILGILIA 225 (287)
Q Consensus 183 ~~~~~~~~~s~~~~l~~v~~~~~s~~~~~e~~~~~~~~G~~li 225 (287)
++.-+|.-+--+--+--++..+..-++ ....+..|++|.+.+
T Consensus 288 l~iDD~l~a~~vHgv~Gi~G~l~~glf-a~~~~~~Ql~g~~~~ 329 (407)
T 3b9w_A 288 AKTIDTCGVHNLHGLPGLLGGFSAILI-VPGIAVAQLTGIGIT 329 (407)
T ss_dssp SCCCCTTCHHHHTTHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred CCCCCCCCCeecchHHHHHHHHHHHHH-ccCCcHHHHHHHHHH
Confidence 455666655555555555555555433 333345688887665
No 8
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=37.30 E-value=1.6e+02 Score=26.21 Aligned_cols=15 Identities=0% Similarity=-0.483 Sum_probs=6.9
Q ss_pred HHHHHhhhccccccc
Q 023136 21 NGISIGLLNLSLGFN 35 (287)
Q Consensus 21 ~~~~~~~~~~al~~~ 35 (287)
..........+.+..
T Consensus 138 ~~~~~~in~~g~~~~ 152 (511)
T 4djk_A 138 LWALALTQFGGTKYT 152 (511)
T ss_dssp HHHHHHHHHTCSSSH
T ss_pred HHHHHHHHHhChHHH
Confidence 333444444555543
No 9
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=28.01 E-value=80 Score=20.25 Aligned_cols=21 Identities=5% Similarity=0.164 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHhhcch
Q 023136 219 ILGILIAVIGMVLYSYCCSLE 239 (287)
Q Consensus 219 ~~G~~lil~g~~~~~~~~~~~ 239 (287)
+++.++.++|+++....+-+.
T Consensus 22 ifA~vLfi~GI~iilS~KckC 42 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRC 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccc
Confidence 345566677777666554443
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=24.76 E-value=40 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHhhcchh
Q 023136 219 ILGILIAVIGMVLYSYCCSLES 240 (287)
Q Consensus 219 ~~G~~lil~g~~~~~~~~~~~~ 240 (287)
+++.++.++|+++....|-+-+
T Consensus 25 ifA~vLfi~GI~iilS~kcrCk 46 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCRCK 46 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC----
T ss_pred hhHHHHHHHHHHHHHcCccccC
Confidence 3455666777777665544443
No 11
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=20.69 E-value=3.5e+02 Score=22.09 Aligned_cols=17 Identities=0% Similarity=-0.179 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHHHHHH
Q 023136 121 STQLLYQSCPYQALTLF 137 (287)
Q Consensus 121 ~~~~~~~~~~~~~~~l~ 137 (287)
-+...+..++.|++...
T Consensus 104 ~W~~v~~gNliGa~~~a 120 (261)
T 4fc4_A 104 ILPQTWLGNLVGSVFVA 120 (261)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35566667777776544
Done!