Query 023136
Match_columns 287
No_of_seqs 121 out of 1531
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 16:57:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023136.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023136hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 39.9 80 0.0058 24.7 17.7 42 91-135 61-102 (447)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 19.1 95 0.0069 23.4 5.6 63 12-78 3-65 (248)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 19.0 48 0.0035 15.2 3.0 17 91-107 3-19 (27)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 8.7 4.3E+02 0.032 20.7 15.8 83 55-141 246-329 (383)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 7.6 4.3E+02 0.031 19.8 15.7 8 53-60 198-205 (447)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 7.2 1.7E+02 0.012 18.1 3.1 21 220-240 37-57 (100)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 5.8 71 0.0052 19.8 0.5 21 221-241 27-47 (91)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.6 2.5E+02 0.018 17.6 3.3 21 220-240 43-63 (107)
9 d1gl4a1 d.22.1.2 (A:399-631) D 5.0 1.1E+02 0.0083 22.7 1.2 38 29-67 42-79 (233)
10 d1uptb_ a.193.1.1 (B:) Golgi a 4.7 1.4E+02 0.01 16.8 1.2 22 52-73 11-32 (58)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=39.89 E-value=80 Score=24.70 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQALT 135 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (287)
.|.+... ..+.+++.....-++.+++ .+-..+....+...+.
T Consensus 61 ~g~~~s~-~~~~~~~~~~~~G~l~Dr~--g~r~~~~~~~~~~~~~ 102 (447)
T d1pw4a_ 61 LGFALSG-ISIAYGFSKFIMGSVSDRS--NPRVFLPAGLILAAAV 102 (447)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHc--CchHHHHHHHHHHHHH
Confidence 4544443 2344444555555555544 3444444333333333
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=19.05 E-value=95 Score=23.37 Aligned_cols=63 Identities=13% Similarity=-0.069 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhhHHHHHHHhhhh
Q 023136 12 RAVMGFGVLNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSLVILLVGV 78 (287)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~~~~~~l~~~G~ 78 (287)
-||+.++++.++..++....+..-....+. ...+.+.++-++++.+|.-.+|++-=.+++..+
T Consensus 3 lK~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 3 LKWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp CTHHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 467888888877766665555444443333 334556667788899998888887544444333
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.03 E-value=48 Score=15.25 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023136 91 LGSVLSLLAVLTTCVAQ 107 (287)
Q Consensus 91 ~G~~l~l~s~~~~a~~~ 107 (287)
+|.+.+-.++++|+.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777778888888764
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.69 E-value=4.3e+02 Score=20.73 Aligned_cols=83 Identities=11% Similarity=-0.057 Sum_probs=33.9
Q ss_pred HHHhcceecchhhHHHHHHHhhhheeeeecCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHhHHHH
Q 023136 55 ETLFFRKKFSRNIQLSLVILLVGVGIATVTDLQLN-VLGSVLSLLAVLTTCVAQIMTNTIQKKFKVSSTQLLYQSCPYQA 133 (287)
Q Consensus 55 ~~l~~~e~~~~~~~~~~~l~~~G~~l~~~~~~~~~-~~G~~l~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (287)
...+.++|.+...... -.++|++-++......+ +...++++++++..-....+.|+..|- | |+.....-....+.
T Consensus 246 ~~~~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~i-D-D~~~~~~vHg~~Gi 321 (383)
T d1u7ga_ 246 GEWALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRV-D-DPCDVFGVHGVCGI 321 (383)
T ss_dssp HHHHHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCS-C-CGGGHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhccc-c-cccceEeehhhhHH
Confidence 3334556666554332 22334443333332233 334556655554443333333332231 1 44444443333344
Q ss_pred HHHHHHHH
Q 023136 134 LTLFIIGP 141 (287)
Q Consensus 134 ~~l~~~~~ 141 (287)
...+....
T Consensus 322 ~G~l~~gl 329 (383)
T d1u7ga_ 322 VGCIMTGI 329 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44443333
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.60 E-value=4.3e+02 Score=19.82 Aligned_cols=8 Identities=25% Similarity=0.438 Sum_probs=3.2
Q ss_pred HHHHHhcc
Q 023136 53 LLETLFFR 60 (287)
Q Consensus 53 l~~~l~~~ 60 (287)
++.+.+.+
T Consensus 198 ~~~~~~~~ 205 (447)
T d1pw4a_ 198 LFAFAMMR 205 (447)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhcc
Confidence 34444443
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.21 E-value=1.7e+02 Score=18.13 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHhhcchh
Q 023136 220 LGILIAVIGMVLYSYCCSLES 240 (287)
Q Consensus 220 ~G~~lil~g~~~~~~~~~~~~ 240 (287)
.++.+++.+...|...+.|.+
T Consensus 37 ~~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 37 AAITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHHhhhhhcc
Confidence 344556677777776665543
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.81 E-value=71 Score=19.81 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHhhcchhh
Q 023136 221 GILIAVIGMVLYSYCCSLESQ 241 (287)
Q Consensus 221 G~~lil~g~~~~~~~~~~~~~ 241 (287)
...+++.|.++|..-|.|+++
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHHHhhheeeeccC
Confidence 345567777777777766543
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.60 E-value=2.5e+02 Score=17.57 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHhhcchh
Q 023136 220 LGILIAVIGMVLYSYCCSLES 240 (287)
Q Consensus 220 ~G~~lil~g~~~~~~~~~~~~ 240 (287)
..+.+++.|...|..-+.|++
T Consensus 43 ~~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 43 TAVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHHhhhhhcc
Confidence 344455667777776665543
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.01 E-value=1.1e+02 Score=22.70 Aligned_cols=38 Identities=5% Similarity=-0.239 Sum_probs=30.2
Q ss_pred cccccccchhHHHHHHhhHHHHHHHHHHHhcceecchhh
Q 023136 29 NLSLGFNSVGFYQMTKLAIIPCTILLETLFFRKKFSRNI 67 (287)
Q Consensus 29 ~~al~~~~~~~~~~i~~~~pi~~~l~~~l~~~e~~~~~~ 67 (287)
+.++..+|.+....++-+.|+... ++|+|-+|......
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~N 79 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFKN 79 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCCC
T ss_pred EEEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCccC
Confidence 467888899999999988888874 88999888766543
No 10
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.67 E-value=1.4e+02 Score=16.77 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=15.2
Q ss_pred HHHHHHhcceecchhhHHHHHH
Q 023136 52 ILLETLFFRKKFSRNIQLSLVI 73 (287)
Q Consensus 52 ~l~~~l~~~e~~~~~~~~~~~l 73 (287)
+++.++..+|..+..+.++.++
T Consensus 11 vLfeYMmG~E~~tlaKVi~av~ 32 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTVL 32 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCcchhHHHHHHHHHH
Confidence 4566777778888777776553
Done!