Query 023137
Match_columns 287
No_of_seqs 191 out of 440
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 08:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 6.2E-58 1.3E-62 416.8 20.2 221 29-286 6-230 (230)
2 PF02453 Reticulon: Reticulon; 100.0 1.2E-36 2.5E-41 256.3 -7.1 163 67-261 1-169 (169)
3 PF04842 DUF639: Plant protein 95.6 0.11 2.4E-06 54.9 11.1 125 66-196 505-639 (683)
4 PF08372 PRT_C: Plant phosphor 91.2 0.055 1.2E-06 47.6 -0.3 50 40-89 53-107 (156)
5 COG1377 FlhB Flagellar biosynt 89.1 9.2 0.0002 38.1 13.0 35 152-187 127-161 (363)
6 PF06398 Pex24p: Integral pero 88.8 7.5 0.00016 37.3 12.1 23 66-88 31-53 (359)
7 PRK05702 flhB flagellar biosyn 86.5 23 0.00051 34.9 14.1 25 152-177 127-151 (359)
8 COG4792 EscU Type III secretor 85.2 6.1 0.00013 38.8 9.2 98 157-266 125-228 (349)
9 KOG1792 Reticulon [Intracellul 85.2 1.2 2.7E-05 41.4 4.4 98 159-269 42-143 (230)
10 PF08372 PRT_C: Plant phosphor 66.1 17 0.00036 32.2 5.8 49 149-197 74-122 (156)
11 PRK12721 secretion system appa 64.5 1.5E+02 0.0033 29.2 12.8 25 152-177 120-144 (349)
12 KOG1726 HVA22/DP1 gene product 62.4 52 0.0011 30.9 8.6 30 243-272 95-124 (225)
13 TIGR01404 FlhB_rel_III type II 45.8 2.9E+02 0.0063 27.1 11.2 34 152-186 119-152 (342)
14 PRK08156 type III secretion sy 45.0 2.5E+02 0.0055 27.9 10.7 25 152-177 115-139 (361)
15 PRK13109 flhB flagellar biosyn 41.1 3.5E+02 0.0076 26.8 11.0 27 152-179 129-155 (358)
16 PRK15489 nfrB bacteriophage N4 40.6 2.4E+02 0.0053 30.5 10.5 106 66-196 350-456 (703)
17 COG1458 Predicted DNA-binding 40.3 46 0.00099 31.1 4.4 40 123-162 78-117 (221)
18 PF04298 Zn_peptidase_2: Putat 39.7 2.7E+02 0.0058 26.1 9.4 107 68-197 107-218 (222)
19 PRK12468 flhB flagellar biosyn 39.4 3.4E+02 0.0074 27.2 10.7 25 152-177 127-151 (386)
20 COG2364 Predicted membrane pro 37.9 1.2E+02 0.0026 28.3 6.7 68 150-228 56-123 (210)
21 KOG3488 Dolichol phosphate-man 35.7 71 0.0015 25.3 4.2 35 159-193 38-72 (81)
22 PRK09108 type III secretion sy 35.7 4.5E+02 0.0097 26.0 11.1 25 152-177 122-146 (353)
23 TIGR00328 flhB flagellar biosy 35.3 4.5E+02 0.0098 25.9 11.3 31 152-183 120-150 (347)
24 PRK12772 bifunctional flagella 34.5 4.2E+02 0.009 28.1 10.9 25 152-177 383-407 (609)
25 PF13994 PgaD: PgaD-like prote 32.6 2.2E+02 0.0047 24.1 7.1 9 115-123 78-86 (138)
26 COG2928 Uncharacterized conser 32.0 1.2E+02 0.0025 28.6 5.7 41 173-215 18-58 (222)
27 PF06881 Elongin_A: RNA polyme 31.1 78 0.0017 25.6 4.0 33 236-268 64-96 (109)
28 PF01484 Col_cuticle_N: Nemato 29.3 1.3E+02 0.0028 20.7 4.4 13 231-243 15-27 (53)
29 KOG3145 Cystine transporter Cy 27.0 2.9E+02 0.0063 27.6 7.7 31 141-171 199-229 (372)
30 COG0053 MMT1 Predicted Co/Zn/C 26.6 4.2E+02 0.009 25.4 8.7 27 107-133 90-116 (304)
31 PF04842 DUF639: Plant protein 25.1 3.5E+02 0.0076 29.4 8.5 32 152-183 498-529 (683)
32 TIGR03875 RNA_lig_partner RNA 23.5 95 0.002 28.9 3.5 35 128-162 79-113 (206)
33 PRK04358 hypothetical protein; 23.4 96 0.0021 29.0 3.6 34 129-162 84-117 (217)
34 PF02453 Reticulon: Reticulon; 21.6 37 0.00079 28.4 0.4 28 66-93 99-126 (169)
35 KOG1889 Putative phosphoinosit 21.3 2.4E+02 0.0052 30.0 6.2 81 54-134 486-576 (579)
36 PF06363 Picorna_P3A: Picornav 20.4 5E+02 0.011 21.6 6.8 50 136-197 41-90 (100)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-58 Score=416.77 Aligned_cols=221 Identities=59% Similarity=0.968 Sum_probs=211.9
Q ss_pred CCCCCCCCCCCcchhhhccccccCCCCcccccccCCCcccceeecccCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 023137 29 SSSDSDDDKPSSIDAFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHIS 108 (287)
Q Consensus 29 s~~~~~~~~~~~~~~~~~~~~r~fgr~~~vh~vLGggkvaDlLlWRn~k~Sa~vfg~~t~~w~Lf~~~~ysliSlv~~il 108 (287)
|++|++++++++++ .+++++|+|+|++|+|+++|||+++|+++|||+|.||++|++++++|++|+..+|+.+|++|+++
T Consensus 6 s~~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ 84 (230)
T KOG1792|consen 6 SSSNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHIL 84 (230)
T ss_pred cccccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33488888877677 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcc-CCC--CCC-ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHH
Q 023137 109 ILSLAVLFLWSNASTFINK-SPP--EIP-VVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSI 184 (287)
Q Consensus 109 ll~l~vlFl~~~~~~~ink-~~~--~~P-~~~isee~v~~~a~~l~~~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~ 184 (287)
++++++.|+|++...++|| ++| ..| ++++|||.+++.+++++.++|+.+.++|++++|+|+++|++++++||++|+
T Consensus 85 ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~ 164 (230)
T KOG1792|consen 85 LLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSY 164 (230)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 9999999999999998888 666 688 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHhhccchhhHHHHHHHHHHHHHHHhhhhccCcccceeeeeehhhHHHhhchhHHHHHHHHHHHHHHHHHH
Q 023137 185 VGNWCNFVTLFYIGKKHSLVLMAYFLKWIVFLLKCLDLLYGSFETVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYA 264 (287)
Q Consensus 185 vGs~~s~~TLlyi~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~v~~fTvP~lYekyed~ID~~~~ka~~~ik~~y~ 264 (287)
+|+|||++||+|+ |++++||+|++||||||+||++++++.++++++|+
T Consensus 165 vGs~fn~lTll~i--------------------------------g~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~ 212 (230)
T KOG1792|consen 165 VGSLFNFLTLLYI--------------------------------GLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYR 212 (230)
T ss_pred HHHhhhHHHHHHH--------------------------------HHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCccCCC
Q 023137 265 VFDEKVLKKVLSRIPKGALKKK 286 (287)
Q Consensus 265 ~~d~kvl~kv~skiP~~~~k~k 286 (287)
++|+|++ +|||+|+.+++
T Consensus 213 ~~~~k~l----~kip~~~~~~~ 230 (230)
T KOG1792|consen 213 KFDEKVL----SKIPAGPRKKE 230 (230)
T ss_pred HHHHHHh----hcCCCccccCC
Confidence 9999999 99999988753
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=1.2e-36 Score=256.34 Aligned_cols=163 Identities=39% Similarity=0.627 Sum_probs=48.5
Q ss_pred ccceeecccCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCceeeCHH
Q 023137 67 PADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSP------PEIPVVTLPEK 140 (287)
Q Consensus 67 vaDlLlWRn~k~Sa~vfg~~t~~w~Lf~~~~ysliSlv~~illl~l~vlFl~~~~~~~ink~~------~~~P~~~isee 140 (287)
|+|+++||||+.||.+|++++++|+++.+.++|++|++|+++++.+++.+++....+++++.+ ++.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999999999988888777755 44457899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHhhccchhhHHHHHHHHHHHHHHHhh
Q 023137 141 FVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGKKHSLVLMAYFLKWIVFLLKCL 220 (287)
Q Consensus 141 ~v~~~a~~l~~~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~TLlyi~~~~~~~~~~~~~~~~~~~~~c~ 220 (287)
.++++++.+++.+|..+..+|+++.++|++.|+++++++|+++.+|+++|++||+|+
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l----------------------- 137 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYL----------------------- 137 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHH-----------------------
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccceeeeeehhhHHHhhchhHHHHHHHHHHHHHHH
Q 023137 221 DLLYGSFETVFVLLHTVPVIYEKYEDKIDSFGEKATIEIKK 261 (287)
Q Consensus 221 ~~~~~~~~~~~v~~fTvP~lYekyed~ID~~~~ka~~~ik~ 261 (287)
+++++||+|.+||+||++||++++++++++||
T Consensus 138 ---------~~~~~f~~P~ly~~~~~~Id~~~~~~~~~~~k 169 (169)
T PF02453_consen 138 ---------GVLGAFTVPKLYEKYQEEIDQYVAKVKEKVKK 169 (169)
T ss_dssp -----------------------------------------
T ss_pred ---------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999888865
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=95.59 E-value=0.11 Score=54.90 Aligned_cols=125 Identities=17% Similarity=0.094 Sum_probs=76.8
Q ss_pred cccceeecccCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhcc--------CCCCCC--ce
Q 023137 66 KPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINK--------SPPEIP--VV 135 (287)
Q Consensus 66 kvaDlLlWRn~k~Sa~vfg~~t~~w~Lf~~~~ysliSlv~~illl~l~vlFl~~~~~~~ink--------~~~~~P--~~ 135 (287)
...++..|+||.+|..+++.++.+.+- .|.+|-+- ..++.+++..+|.....-.+| .||+.- +-
T Consensus 505 ~~~~l~~We~P~kt~~Fl~~~~~iI~r-~wl~Y~~p-----~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq 578 (683)
T PF04842_consen 505 WLQKLASWEEPLKTLVFLALFLYIIYR-GWLGYIFP-----AFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ 578 (683)
T ss_pred HHHHHhhccCcchhHHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence 344788999999999998877763322 34444322 223333444456333211122 122111 11
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 023137 136 TLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFY 196 (287)
Q Consensus 136 ~isee~v~~~a~~l~~~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~TLly 196 (287)
.+.-+....-++......|-++-++|.|.+...++.+-+|++.|.+++.+-.++-+--++.
T Consensus 579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~ 639 (683)
T PF04842_consen 579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILL 639 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222233334556677889999999999999999999999999999888876655443333
No 4
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=91.24 E-value=0.055 Score=47.65 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=36.4
Q ss_pred cchhhhccccccCCCCcccccccC-----CCcccceeecccCchhHHHHHHHHHH
Q 023137 40 SIDAFKSKVFRLFGREKPIHHVLG-----AGKPADIFLWRNKKISAGVLGGATAM 89 (287)
Q Consensus 40 ~~~~~~~~~~r~fgr~~~vh~vLG-----ggkvaDlLlWRn~k~Sa~vfg~~t~~ 89 (287)
++++++.+..|+-.--.-+-.++| |.++..++.||||..|+....+.+++
T Consensus 53 ~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~ 107 (156)
T PF08372_consen 53 PPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVA 107 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence 345677776666443334666776 67899999999999999988776653
No 5
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.08 E-value=9.2 Score=38.10 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGN 187 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vGs 187 (287)
.+|- ++-++++++.+.+..++|.++=.-++++++-
T Consensus 127 kinP-~~G~KRiFs~~~~vEllKsllKi~~v~~v~~ 161 (363)
T COG1377 127 KLNP-IKGLKRIFSLQTLVELLKSLLKIVLVGLVAY 161 (363)
T ss_pred ccCh-hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 6667778888888888776665555555543
No 6
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=88.83 E-value=7.5 Score=37.33 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=17.5
Q ss_pred cccceeecccCchhHHHHHHHHH
Q 023137 66 KPADIFLWRNKKISAGVLGGATA 88 (287)
Q Consensus 66 kvaDlLlWRn~k~Sa~vfg~~t~ 88 (287)
.+.++++|+|+-.+-.++...+.
T Consensus 31 ~vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 31 RVLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHHeEEeCCCCcchHHHHHHHH
Confidence 35679999999988777665554
No 7
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=86.48 E-value=23 Score=34.94 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIA 177 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~ 177 (287)
.+|- ++-++++++.+.+..++|-++
T Consensus 127 rlNP-i~G~KriFS~~~l~el~Ksll 151 (359)
T PRK05702 127 KLNP-LKGLKRMFSAQGLVELLKSLL 151 (359)
T ss_pred hcCH-HHHHHHhcCHHHHHHHHHHHH
Confidence 4554 667888888888777666444
No 8
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=85.24 E-value=6.1 Score=38.80 Aligned_cols=98 Identities=16% Similarity=0.229 Sum_probs=60.8
Q ss_pred HHHHhhhhcccChHH----HHHHHHHHHHH--HHHHHhhhhhHHHhhccchhhHHHHHHHHHHHHHHHhhhhccCcccce
Q 023137 157 LAVLREIASGRDLKK----FLGVIAGLWLL--SIVGNWCNFVTLFYIGKKHSLVLMAYFLKWIVFLLKCLDLLYGSFETV 230 (287)
Q Consensus 157 l~~lr~I~~g~d~~~----flkv~~~LwvL--s~vGs~~s~~TLlyi~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 230 (287)
++.+++|++.+.... .+||++...+. -..|.|-+|..|=+.|--|....-+.+.+|++-+. +- |
T Consensus 125 ~~~~K~ifS~rS~vEl~KS~lKV~vLslif~f~l~~~~~t~~~lp~CG~~C~~~Vv~~~~~~L~~g~--~~--------~ 194 (349)
T COG4792 125 VQNAKRIFSLRSVVELLKSLLKVVVLSLIFWFMLHGYANTFLYLPGCGLYCALPVVSFLLRLLWVGV--AV--------G 194 (349)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHH--HH--------H
Confidence 344556666555444 44555543333 34566667777777799999999999999998842 11 2
Q ss_pred eeeeehhhHHHhhchhHHHHHHHHHHHHHHHHHHHH
Q 023137 231 FVLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVF 266 (287)
Q Consensus 231 ~v~~fTvP~lYekyed~ID~~~~ka~~~ik~~y~~~ 266 (287)
++..-.+-..+|+|| +=..+..-..++|.-|...
T Consensus 195 ylv~sv~Dy~fqr~~--~~K~lkMSKdEVkRE~Kd~ 228 (349)
T COG4792 195 YLVFSVADYAFQRYQ--ILKELKMSKDEVKREYKDM 228 (349)
T ss_pred HHHHHHHHHHHHHHH--HHHHhccCHHHHHHHHhcc
Confidence 333334556778887 4445555666676666544
No 9
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.16 E-value=1.2 Score=41.38 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=62.3
Q ss_pred HHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHhhccchhhHHHHHHHHHHHHHHHhhhhccCcccceeee----e
Q 023137 159 VLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGKKHSLVLMAYFLKWIVFLLKCLDLLYGSFETVFVL----L 234 (287)
Q Consensus 159 ~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~TLlyi~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~v~----~ 234 (287)
...|+.++||.+.+..+..+..++-.+-.+++..++..+- --++...+-+-.|. -+.+...= .
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~-~i~ll~~~i~F~w~------------~~~~~~~k~~~~~ 108 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLC-HILLLALAILFLWS------------KAVTFLNKKSEPG 108 (230)
T ss_pred chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHHHHHH------------HHHHHHhcCCCcc
Confidence 4678999999999998877666666666665555554440 00111122222222 22111110 1
Q ss_pred ehhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 023137 235 HTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEK 269 (287)
Q Consensus 235 fTvP~lYekyed~ID~~~~ka~~~ik~~y~~~d~k 269 (287)
+.+|.-++-.|++++++...+..+++...+++.+=
T Consensus 109 ~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~i 143 (230)
T KOG1792|consen 109 AYLPVEITIPEEFVLALASSLRVEINQALSELRDI 143 (230)
T ss_pred ccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888899999999999999999888777663
No 10
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=66.11 E-value=17 Score=32.19 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 023137 149 LRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYI 197 (287)
Q Consensus 149 l~~~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~TLlyi 197 (287)
+...+....+.++.++.++|...|..+++++++++++--+.-+-.++++
T Consensus 74 vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~ 122 (156)
T PF08372_consen 74 VLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLI 122 (156)
T ss_pred HHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445556667889999999999999999998888877555444444333
No 11
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=64.52 E-value=1.5e+02 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIA 177 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~ 177 (287)
.+|- ++-++++++-+.+..++|-++
T Consensus 120 rlNP-~~GlKriFs~~~l~el~Ksl~ 144 (349)
T PRK12721 120 KINP-VSNAKQIFSLKSVFELCKSLL 144 (349)
T ss_pred hcCH-hHhHHHhcCHHHHHHHHHHHH
Confidence 4554 667788888888665555443
No 12
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=62.44 E-value=52 Score=30.87 Aligned_cols=30 Identities=20% Similarity=0.199 Sum_probs=22.6
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023137 243 KYEDKIDSFGEKATIEIKKQYAVFDEKVLK 272 (287)
Q Consensus 243 kyed~ID~~~~ka~~~ik~~y~~~d~kvl~ 272 (287)
++|++||+++.++.+..-++...+-.+.++
T Consensus 95 ~~E~eid~~l~~~k~~~~~~a~~~~~r~l~ 124 (225)
T KOG1726|consen 95 KHEEEIDRMLVEAKERVYDAAVSILKRALN 124 (225)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999988877766655555543
No 13
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=45.79 E-value=2.9e+02 Score=27.13 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIAGLWLLSIVG 186 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vG 186 (287)
.+|- ++-++++++.+.+..++|-++=+-+++.++
T Consensus 119 rlnP-~~g~KriFS~~~l~el~K~llK~~~~~~v~ 152 (342)
T TIGR01404 119 KLNP-ISGLKQIFSLRSLKELLKSILKLVALALIF 152 (342)
T ss_pred hcCH-hHHHHHhcCHhHHHHHHHHHHHHHHHHHHH
Confidence 4554 567888888888777766555444444433
No 14
>PRK08156 type III secretion system protein SpaS; Validated
Probab=45.00 E-value=2.5e+02 Score=27.93 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIA 177 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~ 177 (287)
.+|- ++-++++++.+.+..++|-++
T Consensus 115 rlNP-~~GlKriFS~~~lvel~Ksll 139 (361)
T PRK08156 115 ALNP-VKGLKKIFSLRTVKEFVKALL 139 (361)
T ss_pred hcCH-hHhHHHhcCHHHHHHHHHHHH
Confidence 4564 577888888888776666444
No 15
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.07 E-value=3.5e+02 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIAGL 179 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~~L 179 (287)
.+|- ++-++++++.+++..++|-++=+
T Consensus 129 rlNP-i~GlKriFS~~~l~el~KsllK~ 155 (358)
T PRK13109 129 RISP-MKGWTRIFGTSGQVEFLKSLFKF 155 (358)
T ss_pred hcCH-HHHHHHhcCHHHHHHHHHHHHHH
Confidence 4554 66788888888877776655433
No 16
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=40.57 E-value=2.4e+02 Score=30.54 Aligned_cols=106 Identities=17% Similarity=0.168 Sum_probs=47.9
Q ss_pred cccceeecccCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCc-eeeCHHHHHH
Q 023137 66 KPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPV-VTLPEKFVLE 144 (287)
Q Consensus 66 kvaDlLlWRn~k~Sa~vfg~~t~~w~Lf~~~~ysliSlv~~illl~l~vlFl~~~~~~~ink~~~~~P~-~~isee~v~~ 144 (287)
-...-++|||.|- .+. +++++++|++++.++++.++..+ +..++..|. +..+.=..--
T Consensus 350 ~~~~y~~~rdrkg-------~~t----------~~~~~~~y~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 408 (703)
T PRK15489 350 LATRYLLFRDRKG-------IVT----------SLVSIIAYVLLLNFLLLAVLRRA----GWWTMSFPSLFVTGGWMQYL 408 (703)
T ss_pred Hhhhhhhhhccch-------hHH----------HHHHHHHHHHHHHHHHHHHHHHc----CCCccccccccCCcHHHHHH
Confidence 3445677888872 222 66777888776655433332222 222333332 2222222223
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 023137 145 FASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFY 196 (287)
Q Consensus 145 ~a~~l~~~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~TLly 196 (287)
+.-...-.+|+.+....=+..---+..-+..+ .=-.+||++||...+-
T Consensus 409 l~~n~~~~~~r~~~r~~f~~~~yg~~~~~~~~----~r~~~~n~in~~a~~r 456 (703)
T PRK15489 409 LAANAVALANRLAQRFYFVGRLYGWEQGLLSI----PRMVVGNFINFMAVCR 456 (703)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHhcch----HHHHHHHHHHHHHHHH
Confidence 33333444555544333222222222222111 1245788888765543
No 17
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=40.26 E-value=46 Score=31.05 Aligned_cols=40 Identities=33% Similarity=0.513 Sum_probs=31.9
Q ss_pred hhhccCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhh
Q 023137 123 TFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLRE 162 (287)
Q Consensus 123 ~~ink~~~~~P~~~isee~v~~~a~~l~~~iN~~l~~lr~ 162 (287)
+++-+.+|+.-++.||-+.+.++...++..+|+.+....+
T Consensus 78 twivkKtPnryevkiPa~ifyeyV~diR~RinkGlRvAE~ 117 (221)
T COG1458 78 TWIVKKTPNRYEVKIPAAIFYEYVEDIRERINKGLRVAEE 117 (221)
T ss_pred eeeEecCCCceeecCcHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 3444555666689999999999999999999999876544
No 18
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=39.75 E-value=2.7e+02 Score=26.14 Aligned_cols=107 Identities=22% Similarity=0.259 Sum_probs=60.1
Q ss_pred cceeecccCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCceeeCHHHHHHHHH
Q 023137 68 ADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFAS 147 (287)
Q Consensus 68 aDlLlWRn~k~Sa~vfg~~t~~w~Lf~~~~ysliSlv~~illl~l~vlFl~~~~~~~ink~~~~~P~~~isee~v~~~a~ 147 (287)
.-.+-||+.-....-++.-..+|+++.-.-......+..+.++.+.+..+ -++ +++|.|.=
T Consensus 107 Y~pl~lRs~lvP~~~~~s~~~~~l~~~G~~l~~~~~l~~~Gi~lf~~~vl----f~l----------vTLPVEfd----- 167 (222)
T PF04298_consen 107 YAPLRLRSALVPVANIGSNLSWILLILGLFLSSGAGLLWIGIILFSLAVL----FQL----------VTLPVEFD----- 167 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhe----------eechhhhh-----
Confidence 34677898888888887777766554211111222333333332222222 122 23333321
Q ss_pred HHHHHHHHHHHHHhh--hhcccC---hHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 023137 148 ALRYEINRALAVLRE--IASGRD---LKKFLGVIAGLWLLSIVGNWCNFVTLFYI 197 (287)
Q Consensus 148 ~l~~~iN~~l~~lr~--I~~g~d---~~~flkv~~~LwvLs~vGs~~s~~TLlyi 197 (287)
.=|+++..+++ +...+| -++-|..++..|+.+-+++..+++-++.+
T Consensus 168 ----AS~RAl~~L~~~~~l~~~E~~~arkVL~AAAlTYVAaal~sll~llr~l~i 218 (222)
T PF04298_consen 168 ----ASRRALPILEEGGILSPEELPGARKVLTAAALTYVAAALSSLLQLLRLLLI 218 (222)
T ss_pred ----hhHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22667777764 333333 46778889999999999988777766655
No 19
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=39.40 E-value=3.4e+02 Score=27.23 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIA 177 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~ 177 (287)
.+|- ++-++++++.+.+..++|-++
T Consensus 127 rlNP-~~GlKriFS~~~l~el~Ksll 151 (386)
T PRK12468 127 RMSP-VAGLKRMFSSQALAELLKAIL 151 (386)
T ss_pred hcCH-HHHHHHhccHHHHHHHHHHHH
Confidence 4554 566788888888766665444
No 20
>COG2364 Predicted membrane protein [Function unknown]
Probab=37.87 E-value=1.2e+02 Score=28.32 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHhhccchhhHHHHHHHHHHHHHHHhhhhccCccc
Q 023137 150 RYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIGKKHSLVLMAYFLKWIVFLLKCLDLLYGSFE 228 (287)
Q Consensus 150 ~~~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~TLlyi~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 228 (287)
...+|..+-.++.+.+.+.+ +....++++ .+|-++++. +..+ | -.++|+.+||.|+.+|....++++.
T Consensus 56 si~l~~~li~~~~~~lr~~~----~Lg~lln~l-liG~fiD~~-l~l~---~--~p~~~~~k~i~~~iG~vL~g~Gt~i 123 (210)
T COG2364 56 SIILGSCLIGCTWILLRKKP----GLGTLLNAL-LIGVFIDLF-LFLL---P--TPTALFSKLIFFLIGLVLIGLGTAI 123 (210)
T ss_pred HHHHHHHHHHHHHHHHhcch----hHHHHHHHH-HHHHHHHHH-HHhh---C--ChHHHHHHHHHHHHHHHHHHhhhhe
Confidence 45678888888888874443 334444433 345554443 3344 2 5689999999999999999998886
No 21
>KOG3488 consensus Dolichol phosphate-mannose regulatory protein (DPM2) [Posttranslational modification, protein turnover, chaperones]
Probab=35.74 E-value=71 Score=25.34 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=29.0
Q ss_pred HHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhH
Q 023137 159 VLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVT 193 (287)
Q Consensus 159 ~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~T 193 (287)
..++.++-|++.-..-+++++..+..+|-+.+.+.
T Consensus 38 iihKyFLpr~yAi~iPvaagl~ll~lig~Fis~vM 72 (81)
T KOG3488|consen 38 IIHKYFLPREYAITIPVAAGLFLLCLIGTFISLVM 72 (81)
T ss_pred HHHHHhcChhHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 34667888899999999999999999998866543
No 22
>PRK09108 type III secretion system protein HrcU; Validated
Probab=35.65 E-value=4.5e+02 Score=26.02 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIA 177 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~ 177 (287)
.+|- ++-++++++.+.+..++|-++
T Consensus 122 rlNP-~~glKriFS~~~l~el~Ksll 146 (353)
T PRK09108 122 ALNP-AAGLKKIFSLRSLIELVKMIV 146 (353)
T ss_pred hcCH-hHhHHHhcCHHHHHHHHHHHH
Confidence 4554 567788888888776666444
No 23
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=35.26 E-value=4.5e+02 Score=25.93 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIAGLWLLS 183 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs 183 (287)
.+|- ++-++++++.+.+..++|-++=+-+++
T Consensus 120 rlNP-i~G~KriFS~~~l~el~KsllK~~~i~ 150 (347)
T TIGR00328 120 KINP-IKGLKRLFSLQSLVELLKSLLKVFLVS 150 (347)
T ss_pred hcCH-HHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 4554 667788888888777666554333333
No 24
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=34.51 E-value=4.2e+02 Score=28.13 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIA 177 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~ 177 (287)
.+|- ++-++++++.+.+..++|-++
T Consensus 383 rlNP-i~GlKrlFS~k~l~el~K~l~ 407 (609)
T PRK12772 383 KLNP-INGFKRMFSMRSVMELLKDLT 407 (609)
T ss_pred hcCH-hHhHHHhcCHHHHHHHHHHHH
Confidence 5665 777888888888766665444
No 25
>PF13994 PgaD: PgaD-like protein
Probab=32.61 E-value=2.2e+02 Score=24.09 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=5.8
Q ss_pred HHHHHHHHh
Q 023137 115 LFLWSNAST 123 (287)
Q Consensus 115 lFl~~~~~~ 123 (287)
+++|+.+-+
T Consensus 78 Li~Wa~yn~ 86 (138)
T PF13994_consen 78 LILWAKYNR 86 (138)
T ss_pred HHHHHHHHH
Confidence 457877753
No 26
>COG2928 Uncharacterized conserved protein [Function unknown]
Probab=32.04 E-value=1.2e+02 Score=28.58 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhccchhhHHHHHHHHHHHH
Q 023137 173 LGVIAGLWLLSIVGNWCNFVTLFYIGKKHSLVLMAYFLKWIVF 215 (287)
Q Consensus 173 lkv~~~LwvLs~vGs~~s~~TLlyi~~~~~~~~~~~~~~~~~~ 215 (287)
+-+++.+|+++++-+|.+-+.--++ --...-+.||..|++.
T Consensus 18 lPlaiT~~vv~~i~~~l~~~~~~~l--p~~~~~~~~~~~~i~~ 58 (222)
T COG2928 18 LPLAITLWVVSWIFGLLDQFVGPLL--PDRLRPAVYFPFNIPG 58 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc--cchhchhhcCchhhHH
Confidence 4466788888888888765555333 1223345567777776
No 27
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=31.12 E-value=78 Score=25.61 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.4
Q ss_pred hhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 023137 236 TVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDE 268 (287)
Q Consensus 236 TvP~lYekyed~ID~~~~ka~~~ik~~y~~~d~ 268 (287)
+-=-+|.+|+++.|.....+...+++.|+..++
T Consensus 64 ~Wr~~Y~~~~~e~e~~~~~~~~~L~~~~~~~~~ 96 (109)
T PF06881_consen 64 SWRELYEKLKKEREEKLKEATERLRKKIKKLQQ 96 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444689999999999999999999999987765
No 28
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=29.34 E-value=1.3e+02 Score=20.70 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=10.0
Q ss_pred eeeeehhhHHHhh
Q 023137 231 FVLLHTVPVIYEK 243 (287)
Q Consensus 231 ~v~~fTvP~lYek 243 (287)
+.+++++|.+|.+
T Consensus 15 ~~~l~~~p~i~~~ 27 (53)
T PF01484_consen 15 LSCLITVPSIYND 27 (53)
T ss_pred HHHHHHHHHHHHH
Confidence 4557889999965
No 29
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=27.01 E-value=2.9e+02 Score=27.60 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccChHH
Q 023137 141 FVLEFASALRYEINRALAVLREIASGRDLKK 171 (287)
Q Consensus 141 ~v~~~a~~l~~~iN~~l~~lr~I~~g~d~~~ 171 (287)
..+.++-+++..+-.++..+|-.+..|++..
T Consensus 199 ~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q~ 229 (372)
T KOG3145|consen 199 TLNDVVFSLHAVLMTVITILQCFFYERGWQR 229 (372)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhhcccc
Confidence 4566777888888888888888887777643
No 30
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=26.59 E-value=4.2e+02 Score=25.40 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCC
Q 023137 107 ISILSLAVLFLWSNASTFINKSPPEIP 133 (287)
Q Consensus 107 illl~l~vlFl~~~~~~~ink~~~~~P 133 (287)
++++..++..+|..+.++++..+++.|
T Consensus 90 ~~i~~~g~~i~~~a~~~~~~~~~~~~~ 116 (304)
T COG0053 90 ILIFAAGFEILLEAIKRLISPQPVEPP 116 (304)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 333344444556666666664444443
No 31
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=25.15 E-value=3.5e+02 Score=29.44 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhcccChHHHHHHHHHHHHHH
Q 023137 152 EINRALAVLREIASGRDLKKFLGVIAGLWLLS 183 (287)
Q Consensus 152 ~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs 183 (287)
-+......+++++.+||+.+++.++++.+.+-
T Consensus 498 Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI 529 (683)
T PF04842_consen 498 PLIEIAKWLQKLASWEEPLKTLVFLALFLYII 529 (683)
T ss_pred cHHHHHHHHHHHhhccCcchhHHHHHHHHHHH
Confidence 34456788999999999999987666544433
No 32
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=23.53 E-value=95 Score=28.89 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=28.7
Q ss_pred CCCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhh
Q 023137 128 SPPEIPVVTLPEKFVLEFASALRYEINRALAVLRE 162 (287)
Q Consensus 128 ~~~~~P~~~isee~v~~~a~~l~~~iN~~l~~lr~ 162 (287)
.+|..-++.||-+.+.++.+.++..||+.+....+
T Consensus 79 KsP~rye~~IPA~i~ye~I~e~R~RInkGLRVAEe 113 (206)
T TIGR03875 79 KSPNRYEVKIPAEIFYEYIEEVRERIDKGLRVAEE 113 (206)
T ss_pred cCCCeeeeeccHHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444589999999999999999999999976443
No 33
>PRK04358 hypothetical protein; Provisional
Probab=23.39 E-value=96 Score=29.04 Aligned_cols=34 Identities=26% Similarity=0.501 Sum_probs=28.4
Q ss_pred CCCCCceeeCHHHHHHHHHHHHHHHHHHHHHHhh
Q 023137 129 PPEIPVVTLPEKFVLEFASALRYEINRALAVLRE 162 (287)
Q Consensus 129 ~~~~P~~~isee~v~~~a~~l~~~iN~~l~~lr~ 162 (287)
+|..-++.||-+.+.++.+.++..||+.+....+
T Consensus 84 sP~ry~v~IPA~i~ye~I~~mR~RInkGLRVAEe 117 (217)
T PRK04358 84 SPNRYEIKIPAEIFYEYIEDMRERINKGLRVAEE 117 (217)
T ss_pred CCCceeeeccHHHHHHHHHHHHHHHhcchHHHHH
Confidence 4444589999999999999999999999976543
No 34
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=21.56 E-value=37 Score=28.37 Aligned_cols=28 Identities=14% Similarity=-0.110 Sum_probs=11.9
Q ss_pred cccceeecccCchhHHHHHHHHHHHHHH
Q 023137 66 KPADIFLWRNKKISAGVLGGATAMWVLF 93 (287)
Q Consensus 66 kvaDlLlWRn~k~Sa~vfg~~t~~w~Lf 93 (287)
...+++.|+|++.|..++++..++..+.
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~l~~l~~lg 126 (169)
T PF02453_consen 99 WLRRLVFGEDPKKSLKVFVVLYILSFLG 126 (169)
T ss_dssp HHHCCCHCT-TTGGG-------------
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999887776655554
No 35
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=21.33 E-value=2.4e+02 Score=30.02 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=47.8
Q ss_pred CCcccccccCCCcccceee----------cccCchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 023137 54 REKPIHHVLGAGKPADIFL----------WRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNAST 123 (287)
Q Consensus 54 r~~~vh~vLGggkvaDlLl----------WRn~k~Sa~vfg~~t~~w~Lf~~~~ysliSlv~~illl~l~vlFl~~~~~~ 123 (287)
||.++.-+||+=.|.+... |+---..++.+.+.+.+.+-+....-+++-.+.+..++++...+++-+..+
T Consensus 486 rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g~~ 565 (579)
T KOG1889|consen 486 RQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPIIFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILINGDQ 565 (579)
T ss_pred ccchHHHhcCCcccccccccCCCcccccCceeehhhHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheechHH
Confidence 7888888899888887774 433333222222222211111122345555566666666666677777788
Q ss_pred hhccCCCCCCc
Q 023137 124 FINKSPPEIPV 134 (287)
Q Consensus 124 ~ink~~~~~P~ 134 (287)
|+|++-...|.
T Consensus 566 fvnwPrl~~p~ 576 (579)
T KOG1889|consen 566 FVNWPRLVLPQ 576 (579)
T ss_pred hcCCccccCcc
Confidence 99998776664
No 36
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=20.44 E-value=5e+02 Score=21.56 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=34.7
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 023137 136 TLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYI 197 (287)
Q Consensus 136 ~isee~v~~~a~~l~~~iN~~l~~lr~I~~g~d~~~flkv~~~LwvLs~vGs~~s~~TLlyi 197 (287)
..+.....++.+.+...+++.+...-| .+-| +-++|.+.|..|.+||+|.
T Consensus 41 ~~~~~a~~kv~~W~~~k~k~~~~FV~R---Nk~W---------~T~~S~~tS~isIL~LV~~ 90 (100)
T PF06363_consen 41 TKIKTACDKVKSWVKNKMKSMLSFVER---NKAW---------FTVVSAVTSFISILLLVTK 90 (100)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH---cchH---------hhHHHHHHHHHHHHHHHHH
Confidence 345677788888888888877765433 1222 2347888899999999887
Done!