Query 023137
Match_columns 287
No_of_seqs 191 out of 440
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.1 5.2E-07 1.8E-11 69.9 0.2 58 117-174 15-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 97.3 5.3E-06 1.8E-10 61.0 -4.8 50 119-168 4-60 (60)
3 3vou_A ION transport 2 domain 45.1 1.2E+02 0.004 24.3 11.0 37 232-268 102-138 (148)
4 2knc_A Integrin alpha-IIB; tra 26.7 1.5E+02 0.0052 20.9 5.5 29 101-131 17-45 (54)
5 2l8s_A Integrin alpha-1; trans 25.6 1.2E+02 0.0041 21.5 4.8 29 101-131 14-42 (54)
6 2k1a_A Integrin alpha-IIB; sin 16.0 1.9E+02 0.0064 19.4 3.9 27 101-129 15-41 (42)
7 1w53_A Phosphoserine phosphata 14.0 1.7E+02 0.0058 22.3 3.7 36 236-271 3-38 (84)
8 3bej_E Nuclear receptor coacti 13.6 29 0.00099 21.3 -0.6 16 54-69 11-26 (26)
9 2wuj_A Septum site-determining 12.3 2.5E+02 0.0087 19.4 4.0 23 244-266 21-43 (57)
10 2lse_A Four helix bundle prote 15.1 51 0.0018 25.4 0.0 42 241-282 51-92 (101)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=98.07 E-value=5.2e-07 Score=69.88 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=54.6
Q ss_pred HHHHHHhhhccCCCCCC-------ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccChHHHHH
Q 023137 117 LWSNASTFINKSPPEIP-------VVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLG 174 (287)
Q Consensus 117 l~~~~~~~ink~~~~~P-------~~~isee~v~~~a~~l~~~iN~~l~~lr~I~~g~d~~~flk 174 (287)
+|..+.+.++|++.++| ++.+|+|.++++++.+...+|.++..+|++++++|+..|+|
T Consensus 15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 68888899999999999 88999999999999999999999999999999999998875
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=97.26 E-value=5.3e-06 Score=60.99 Aligned_cols=50 Identities=22% Similarity=0.273 Sum_probs=44.2
Q ss_pred HHHHhhhccCCCCCC-------ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Q 023137 119 SNASTFINKSPPEIP-------VVTLPEKFVLEFASALRYEINRALAVLREIASGRD 168 (287)
Q Consensus 119 ~~~~~~ink~~~~~P-------~~~isee~v~~~a~~l~~~iN~~l~~lr~I~~g~d 168 (287)
..+.+.++|++.++| ++.+|+|.++++++.+...+|.++..+|++++++|
T Consensus 4 k~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 4 KGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 344566778887788 88999999999999999999999999999999987
No 3
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=45.14 E-value=1.2e+02 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=24.4
Q ss_pred eeeehhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 023137 232 VLLHTVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDE 268 (287)
Q Consensus 232 v~~fTvP~lYekyed~ID~~~~ka~~~ik~~y~~~d~ 268 (287)
...+....+.++.+++.|..-.+...++++.-+.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~ 138 (148)
T 3vou_A 102 AVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAE 138 (148)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667778888888888877776666554444443
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=26.71 E-value=1.5e+02 Score=20.94 Aligned_cols=29 Identities=21% Similarity=0.592 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 023137 101 ITLVCHISILSLAVLFLWSNASTFINKSPPE 131 (287)
Q Consensus 101 iSlv~~illl~l~vlFl~~~~~~~ink~~~~ 131 (287)
+++++-++++++++..+|. ..|++|..++
T Consensus 17 ~svl~GLllL~li~~~LwK--~GFFkR~~~~ 45 (54)
T 2knc_A 17 VGVLGGLLLLTILVLAMWK--VGFFKRNRPP 45 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCCC
Confidence 6777777788888778886 3678776543
No 5
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=25.62 E-value=1.2e+02 Score=21.54 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 023137 101 ITLVCHISILSLAVLFLWSNASTFINKSPPE 131 (287)
Q Consensus 101 iSlv~~illl~l~vlFl~~~~~~~ink~~~~ 131 (287)
+++++-++++++++..+|. ..|++|..++
T Consensus 14 ~svl~GLLLL~Lii~~LwK--~GFFKR~~~~ 42 (54)
T 2l8s_A 14 LSAFAGLLLLMLLILALWK--IGFFKRPLKK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCcc
Confidence 6777777788888888886 3688877543
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=16.05 E-value=1.9e+02 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.549 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 023137 101 ITLVCHISILSLAVLFLWSNASTFINKSP 129 (287)
Q Consensus 101 iSlv~~illl~l~vlFl~~~~~~~ink~~ 129 (287)
+++++-++++++++..+|. ..|++|..
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~ 41 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNR 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCC
Confidence 6677777777777777785 35776653
No 7
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=14.02 E-value=1.7e+02 Score=22.32 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=29.1
Q ss_pred hhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023137 236 TVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVL 271 (287)
Q Consensus 236 TvP~lYekyed~ID~~~~ka~~~ik~~y~~~d~kvl 271 (287)
+.+.+.++|++.+|.++..-.++.-.+-++|..+++
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E~~Ly~~q~fs~~~i 38 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTETSLYQAQKFSRKTI 38 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhHHHH
Confidence 456788999999999998777777777777877665
No 8
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=13.61 E-value=29 Score=21.29 Aligned_cols=16 Identities=38% Similarity=0.746 Sum_probs=10.2
Q ss_pred CCcccccccCCCcccc
Q 023137 54 REKPIHHVLGAGKPAD 69 (287)
Q Consensus 54 r~~~vh~vLGggkvaD 69 (287)
|.|-+|.+|-.|.++|
T Consensus 11 kHkILHrLLQ~~sP~d 26 (26)
T 3bej_E 11 RHKILHRLLQEGSPSX 26 (26)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3556677777766655
No 9
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=12.28 E-value=2.5e+02 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.119 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 023137 244 YEDKIDSFGEKATIEIKKQYAVF 266 (287)
Q Consensus 244 yed~ID~~~~ka~~~ik~~y~~~ 266 (287)
.++++|.++..+...+...++..
T Consensus 21 ~~~EVD~FLd~v~~~~~~l~~e~ 43 (57)
T 2wuj_A 21 DEDEVNEFLAQVRKDYEIVLRKK 43 (57)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999998877776655543
No 10
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=15.08 E-value=51 Score=25.43 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=26.2
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 023137 241 YEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVLSRIPKGA 282 (287)
Q Consensus 241 Yekyed~ID~~~~ka~~~ik~~y~~~d~kvl~kv~skiP~~~ 282 (287)
-|++.|+..+....|-..+-+|.-.=-+|.++|..|-.|+|.
T Consensus 51 iekfrdemeqmykdapnavmeqlleeiekllkkagslvprgs 92 (101)
T 2lse_A 51 IEKFRDEMEQMYKDAPNAVMEQLLEEIEKLLKKAGSLVPRGS 92 (101)
Confidence 356666666655555444444444444678888888888875
Done!