Query 023137
Match_columns 287
No_of_seqs 191 out of 440
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 16:58:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023137.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023137hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1i5za1 a.4.5.4 (A:138-206) Ca 38.9 18 0.0013 23.8 4.2 31 134-164 27-57 (69)
2 d1nvpb_ a.32.1.1 (B:) Large ch 27.8 28 0.002 22.1 3.4 35 236-275 1-35 (43)
3 d2gaua1 a.4.5.4 (A:152-232) Tr 18.9 57 0.0041 21.5 3.9 31 134-164 27-57 (81)
4 d1h2vc1 a.118.1.14 (C:29-290) 15.0 96 0.007 25.3 5.1 29 233-261 145-177 (262)
5 d1cjba_ c.61.1.1 (A:) Hypoxant 14.2 35 0.0026 27.8 2.0 31 234-264 28-65 (228)
6 d1nh2b_ a.32.1.1 (B:) Large ch 9.5 61 0.0045 20.7 1.5 32 242-275 6-37 (46)
7 d1z7ga1 c.61.1.1 (A:4-217) Hyp 9.1 70 0.0051 25.6 2.2 31 234-264 17-54 (214)
8 d1ft9a1 a.4.5.4 (A:134-213) CO 8.5 1.8E+02 0.013 18.9 3.9 30 135-164 29-58 (80)
9 d1zyba1 a.4.5.4 (A:148-220) Pr 8.4 1.1E+02 0.008 20.2 2.7 32 133-164 24-55 (73)
10 d2nn6f2 d.101.1.1 (F:176-270) 8.2 1.7E+02 0.012 19.8 3.7 32 245-276 59-90 (95)
No 1
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=38.90 E-value=18 Score=23.82 Aligned_cols=31 Identities=13% Similarity=0.242 Sum_probs=27.6
Q ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023137 134 VVTLPEKFVLEFASALRYEINRALAVLREIA 164 (287)
Q Consensus 134 ~~~isee~v~~~a~~l~~~iN~~l~~lr~I~ 164 (287)
.+.++++..-+++..-++.+|+.++.+++--
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999998743
No 2
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.76 E-value=28 Score=22.15 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=24.0
Q ss_pred hhhHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023137 236 TVPVIYEKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVL 275 (287)
Q Consensus 236 TvP~lYekyed~ID~~~~ka~~~ik~~y~~~d~kvl~kv~ 275 (287)
|+|.+| +..|+..++..+..+.+ +-+|+.+|+.++
T Consensus 1 tV~kvY---~~VIedVI~~vR~~F~~--~GvDe~vL~eLk 35 (43)
T d1nvpb_ 1 TVPKLY---RSVIEDVINDVRDIFLD--DGVDEQVLMELK 35 (43)
T ss_dssp CHHHHH---HHHHHHHHHHHHHHHHH--HTCCHHHHHHHH
T ss_pred CHHHHH---HHHHHHHHHHHHHHHHH--cCCcHHHHHHHH
Confidence 567776 56788888888877766 346777775443
No 3
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=18.85 E-value=57 Score=21.47 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=26.5
Q ss_pred ceeeCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023137 134 VVTLPEKFVLEFASALRYEINRALAVLREIA 164 (287)
Q Consensus 134 ~~~isee~v~~~a~~l~~~iN~~l~~lr~I~ 164 (287)
.+.++++..-+++..-++.+|+.+..+++--
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 4568899999999999999999999998743
No 4
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.00 E-value=96 Score=25.33 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=21.4
Q ss_pred eeehhhH----HHhhchhHHHHHHHHHHHHHHH
Q 023137 233 LLHTVPV----IYEKYEDKIDSFGEKATIEIKK 261 (287)
Q Consensus 233 ~~fTvP~----lYekyed~ID~~~~ka~~~ik~ 261 (287)
.+.|+|. +|++.+++.|+.++.+...+++
T Consensus 145 vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~~ 177 (262)
T d1h2vc1 145 FLSSLPWVGKELYEKKDAEMDRIFANTESYLKR 177 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 4456665 5889999999999887776654
No 5
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=14.17 E-value=35 Score=27.82 Aligned_cols=31 Identities=35% Similarity=0.510 Sum_probs=25.3
Q ss_pred eehhhHHHhhc-------hhHHHHHHHHHHHHHHHHHH
Q 023137 234 LHTVPVIYEKY-------EDKIDSFGEKATIEIKKQYA 264 (287)
Q Consensus 234 ~fTvP~lYeky-------ed~ID~~~~ka~~~ik~~y~ 264 (287)
+|++|--|++| +++|.+-+++...+|.+.|+
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y~ 65 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVYN 65 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHcC
Confidence 68999999998 56788888888888877764
No 6
>d1nh2b_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.49 E-value=61 Score=20.69 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=23.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023137 242 EKYEDKIDSFGEKATIEIKKQYAVFDEKVLKKVL 275 (287)
Q Consensus 242 ekyed~ID~~~~ka~~~ik~~y~~~d~kvl~kv~ 275 (287)
.-|+..||..++..+..+.+ +-+|+.+|+.++
T Consensus 6 ~vY~~VI~dVI~~vR~dF~~--~Gvde~vL~eLk 37 (46)
T d1nh2b_ 6 RVYEIIVESVVNEVREDFEN--AGIDEQTLQDLK 37 (46)
T ss_dssp HHHHHHHHHHHHHTHHHHHH--TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHH
Confidence 34778899999888887765 347777775554
No 7
>d1z7ga1 c.61.1.1 (A:4-217) Hypoxanthine-guanine PRTase (HGPRTase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=70 Score=25.57 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=25.4
Q ss_pred eehhhHHHhhc-------hhHHHHHHHHHHHHHHHHHH
Q 023137 234 LHTVPVIYEKY-------EDKIDSFGEKATIEIKKQYA 264 (287)
Q Consensus 234 ~fTvP~lYeky-------ed~ID~~~~ka~~~ik~~y~ 264 (287)
+|++|.-|+++ +++|.+-++....+|.+.|+
T Consensus 17 ~f~~p~~~~~~~~~ilis~~~I~~~I~rLA~qI~~~y~ 54 (214)
T d1z7ga1 17 LFCIPNHYAEDLERVFIPHGLIMDRTERLARDVMKEMG 54 (214)
T ss_dssp GSCCCGGGTTTEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred hcccchhhhccccEEecCHHHHHHHHHHHHHHHHHHcC
Confidence 57799999988 77888888888888877774
No 8
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.52 E-value=1.8e+02 Score=18.87 Aligned_cols=30 Identities=17% Similarity=0.146 Sum_probs=25.6
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023137 135 VTLPEKFVLEFASALRYEINRALAVLREIA 164 (287)
Q Consensus 135 ~~isee~v~~~a~~l~~~iN~~l~~lr~I~ 164 (287)
+.++++..-+++..-++.+|+.+..+++--
T Consensus 29 ~~~t~~eiA~~lG~sretvsr~l~~l~~~g 58 (80)
T d1ft9a1 29 VDFTVEEIANLIGSSRQTTSTALNSLIKEG 58 (80)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 457799998999999999999999998743
No 9
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=8.40 E-value=1.1e+02 Score=20.15 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=27.1
Q ss_pred CceeeCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023137 133 PVVTLPEKFVLEFASALRYEINRALAVLREIA 164 (287)
Q Consensus 133 P~~~isee~v~~~a~~l~~~iN~~l~~lr~I~ 164 (287)
..+.++++..-++...-++.+|+++..+++--
T Consensus 24 ~~i~lt~~elA~~lg~sr~tvsr~l~~l~~~g 55 (73)
T d1zyba1 24 KTFKVKMDDLARCLDDTRLNISKTLNELQDNG 55 (73)
T ss_dssp EEEECCHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred eEeecCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 35778999888888888999999999998743
No 10
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.18 E-value=1.7e+02 Score=19.81 Aligned_cols=32 Identities=6% Similarity=0.112 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023137 245 EDKIDSFGEKATIEIKKQYAVFDEKVLKKVLS 276 (287)
Q Consensus 245 ed~ID~~~~ka~~~ik~~y~~~d~kvl~kv~s 276 (287)
++++++.++.|..-.++.|...++-+.+.++.
T Consensus 59 ~d~l~~~lela~~g~~~I~~i~~~aL~~~~~k 90 (95)
T d2nn6f2 59 TESWAEAVRLGLEGCQRLYPVLQQSLVRAARR 90 (95)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999988888888888877755544
Done!