BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023141
         (286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IY5|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
           Complexed With Trna And A Phenylalanyl-Adenylate Analog
          Length = 785

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 22/99 (22%)

Query: 54  RTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEA 113
           RTL    +  AG R ++S P        L L GV   A             +  ++D EA
Sbjct: 291 RTLHPEDLVIAGWRGEESFP--------LGLAGVMGGAE------------SEVREDTEA 330

Query: 114 IAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYAD-VNPVG 151
           IA   A +D + +R  T RR G   ++S R+   V+P+G
Sbjct: 331 IALEVACFDPVSIRK-TARRHGLRTEASHRFERGVDPLG 368


>pdb|1PYS|B Chain B, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
 pdb|1B7Y|B Chain B, Phenylalanyl Trna Synthetase Complexed With
           Phenylalaninyl-Adenylate
 pdb|1EIY|B Chain B, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
           Thermus Thermophilus Complexed With Cognate Trnaphe
 pdb|1B70|B Chain B, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
 pdb|1JJC|B Chain B, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
           Synthetase Complexed With Phenylalanyl-adenylate In The
           Presence Of Manganese
 pdb|2AKW|B Chain B, Crystal Structure Of T.thermophilus Phenylalanyl-trna
           Synthetase Complexed With P-cl-phenylalanine
 pdb|2ALY|B Chain B, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
           Synthetase Complexed With
           5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
 pdb|2AMC|B Chain B, Crystal Structure Of Phenylalanyl-Trna Synthetase
           Complexed With L- Tyrosine
 pdb|3HFZ|B Chain B, Crystal Structure Of Thermus Thermophilus
           Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
 pdb|3TEH|B Chain B, Crystal Structure Of Thermus Thermophilus
           Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
          Length = 785

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 22/99 (22%)

Query: 54  RTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEA 113
           RTL    +  AG R ++S P        L L GV   A             +  ++D EA
Sbjct: 291 RTLHPEDLVIAGWRGEESFP--------LGLAGVMGGAE------------SEVREDTEA 330

Query: 114 IAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYAD-VNPVG 151
           IA   A +D + +R  T RR G   ++S R+   V+P+G
Sbjct: 331 IALEVACFDPVSIRK-TARRHGLRTEASHRFERGVDPLG 368


>pdb|3IAL|A Chain A, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl- Adenylate
 pdb|3IAL|B Chain B, Giardia Lamblia Prolyl-Trna Synthetase In Complex With
           Prolyl- Adenylate
          Length = 518

 Score = 29.3 bits (64), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 46  RGLTSLSRRTLAASGVAKAGSRADDSAPFEMSVENALKLLGVSETASFDEILRAK----- 100
           R +    +R +  + V K  S   ++   E+ V+N +K     E  ++   L+ K     
Sbjct: 383 RDVGKDQKRVIPITEVMKVSSHTTEN--HELVVKNVIK----DELDAYKARLKEKAFAFH 436

Query: 101 NSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYA 145
           NS+V NCK   E +A +E    +      T    G+V D  ++ A
Sbjct: 437 NSMVTNCKSFDEIVACIENKGGLARFPFYTTEADGEVWDKKLKDA 481


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,576,764
Number of Sequences: 62578
Number of extensions: 268865
Number of successful extensions: 566
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 32
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)