BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023141
         (286 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q83CJ2|CBPA_COXBU Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 493 /
           Nine Mile phase I) GN=cbpA PE=3 SV=1
          Length = 313

 Score = 34.7 bits (78), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRS 128
           M  ++  K+LGVS  A+ DEI ++   +      D       +E   QV+ AY++L  + 
Sbjct: 1   MEYQDYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVL--KD 58

Query: 129 LTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQW 161
           + +R+A   + S  +          G  P P W
Sbjct: 59  VEKRKAYDAIGSGWKQGQ-------GFTPPPGW 84


>sp|A9NDK6|CBPA_COXBR Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 331 /
           Henzerling II) GN=cbpA PE=3 SV=1
          Length = 313

 Score = 34.7 bits (78), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRS 128
           M  ++  K+LGVS  A+ DEI ++   +      D       +E   QV+ AY++L  + 
Sbjct: 1   MEYQDYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVL--KD 58

Query: 129 LTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQW 161
           + +R+A   + S  +          G  P P W
Sbjct: 59  VEKRKAYDAIGSGWKQGQ-------GFTPPPGW 84


>sp|A9KE65|CBPA_COXBN Curved DNA-binding protein OS=Coxiella burnetii (strain Dugway
           5J108-111) GN=cbpA PE=3 SV=1
          Length = 313

 Score = 34.7 bits (78), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRS 128
           M  ++  K+LGVS  A+ DEI ++   +      D       +E   QV+ AY++L  + 
Sbjct: 1   MEYQDYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVL--KD 58

Query: 129 LTQRRAGKVVDSSIRYADVNPVGTPGMGPMPQW 161
           + +R+A   + S  +          G  P P W
Sbjct: 59  VEKRKAYDAIGSGWKQGQ-------GFTPPPGW 84


>sp|Q8L397|DNAJ_ACHLA Chaperone protein DnaJ OS=Acholeplasma laidlawii GN=dnaJ PE=3 SV=1
          Length = 369

 Score = 32.7 bits (73), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 7/56 (12%)

Query: 76  MSVENALKLLGVSETASFDEILRAKNSI-------VANCKDDQEAIAQVEAAYDML 124
           M+  +   +LG+S++AS DEI +A  S+       V+  KD +    +V+ AYD+L
Sbjct: 1   MAKRDYYDVLGISKSASQDEIKKAYRSLAKKYHPDVSKEKDAETKFKEVQEAYDVL 56


>sp|P45053|OPPC_HAEIN Oligopeptide transport system permease protein OppC OS=Haemophilus
           influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
           GN=oppC PE=3 SV=1
          Length = 311

 Score = 31.6 bits (70), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 161 WLQTS--LKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLIL 218
           WL  +  ++  T+S++N    +  I  GV    ++L ++       +A YA  +VPGLIL
Sbjct: 185 WLGLARIVRGQTLSLKNKEFVEAAIVCGVPRRQIILKHIIPNVLGLVAVYASLEVPGLIL 244

Query: 219 ASSF 222
             SF
Sbjct: 245 FESF 248


>sp|A6RUD7|CBPYA_BOTFB Carboxypeptidase Y homolog A OS=Botryotinia fuckeliana (strain
           B05.10) GN=CPYA PE=3 SV=1
          Length = 546

 Score = 31.6 bits (70), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 84  LLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAA-YDMLLMRSLTQRRAGKVVDSSI 142
           +LG SE  + D  L    S++ NC D +   + V A+ Y    M    QR    V D   
Sbjct: 328 VLGASECQAMDNALPRCQSLIQNCYDSESVWSCVPASIYCNNAMMGPYQRTGQNVYDVRG 387

Query: 143 RYADVNPVGTPGMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVY 188
           +  D + +    +G    W+   L K+ V  E      LG++   Y
Sbjct: 388 KCEDTSNLCYSALG----WISEFLNKADVQKE------LGVEVSSY 423


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,972,934
Number of Sequences: 539616
Number of extensions: 3719401
Number of successful extensions: 12016
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 12005
Number of HSP's gapped (non-prelim): 26
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)