Query 023141
Match_columns 286
No_of_seqs 178 out of 709
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 3.9E-46 8.5E-51 331.2 13.2 158 88-259 1-167 (194)
2 KOG0721 Molecular chaperone (D 99.6 1.2E-15 2.7E-20 138.8 6.6 115 75-212 95-222 (230)
3 COG0484 DnaJ DnaJ-class molecu 99.3 1.2E-12 2.6E-17 127.1 6.4 59 76-136 1-67 (371)
4 PF00226 DnaJ: DnaJ domain; I 99.2 5.5E-11 1.2E-15 86.3 6.7 52 80-131 1-61 (64)
5 smart00271 DnaJ DnaJ molecular 99.2 3.2E-11 6.9E-16 86.0 4.9 49 79-127 1-58 (60)
6 KOG0713 Molecular chaperone (D 99.2 2.8E-11 6E-16 116.0 6.0 59 76-136 13-79 (336)
7 PTZ00037 DnaJ_C chaperone prot 99.2 4.6E-11 9.9E-16 117.4 7.2 57 73-129 22-82 (421)
8 PRK14296 chaperone protein Dna 99.2 4E-11 8.6E-16 115.7 6.6 59 76-136 1-66 (372)
9 PTZ00100 DnaJ chaperone protei 99.1 8.7E-11 1.9E-15 98.1 6.7 51 75-125 61-115 (116)
10 PRK14288 chaperone protein Dna 99.1 7E-11 1.5E-15 113.7 6.6 52 78-129 2-61 (369)
11 cd06257 DnaJ DnaJ domain or J- 99.1 8.7E-11 1.9E-15 82.2 5.2 46 80-125 1-54 (55)
12 PRK09430 djlA Dna-J like membr 99.1 1E-10 2.3E-15 108.5 6.9 54 74-127 195-263 (267)
13 PRK14286 chaperone protein Dna 99.1 1E-10 2.2E-15 112.7 6.9 54 76-129 1-62 (372)
14 PRK14299 chaperone protein Dna 99.1 1.2E-10 2.6E-15 108.7 6.9 54 76-129 1-61 (291)
15 PRK14276 chaperone protein Dna 99.1 1.1E-10 2.3E-15 112.8 6.7 59 76-136 1-66 (380)
16 PRK14287 chaperone protein Dna 99.1 1.3E-10 2.9E-15 111.9 6.6 54 76-129 1-61 (371)
17 PRK14282 chaperone protein Dna 99.1 1.1E-10 2.5E-15 112.1 6.1 58 76-135 1-67 (369)
18 PRK14280 chaperone protein Dna 99.1 2.3E-10 5E-15 110.3 6.7 54 76-129 1-61 (376)
19 PRK14283 chaperone protein Dna 99.1 2.1E-10 4.7E-15 110.5 6.3 54 76-129 2-62 (378)
20 PRK14279 chaperone protein Dna 99.1 1.8E-10 3.9E-15 111.8 5.8 54 76-129 6-67 (392)
21 PRK10767 chaperone protein Dna 99.0 2.8E-10 6E-15 109.3 6.6 54 76-129 1-62 (371)
22 PRK14294 chaperone protein Dna 99.0 4.4E-10 9.6E-15 107.9 7.0 54 76-129 1-62 (366)
23 PRK14300 chaperone protein Dna 99.0 4.5E-10 9.8E-15 108.2 7.0 51 79-129 3-60 (372)
24 PRK14285 chaperone protein Dna 99.0 3E-10 6.4E-15 109.3 5.6 52 78-129 2-61 (365)
25 PRK14295 chaperone protein Dna 99.0 3.7E-10 8.1E-15 109.5 6.3 53 77-129 7-67 (389)
26 PRK14297 chaperone protein Dna 99.0 3.9E-10 8.5E-15 108.8 6.4 54 76-129 1-62 (380)
27 PRK14277 chaperone protein Dna 99.0 4.8E-10 1E-14 108.5 6.7 52 78-129 4-63 (386)
28 PRK14298 chaperone protein Dna 99.0 4.5E-10 9.7E-15 108.6 6.4 52 78-129 4-62 (377)
29 PRK14301 chaperone protein Dna 99.0 4.8E-10 1E-14 108.2 6.3 59 76-136 1-67 (373)
30 PRK10266 curved DNA-binding pr 99.0 8.1E-10 1.8E-14 103.7 7.0 54 76-129 1-61 (306)
31 PRK14278 chaperone protein Dna 99.0 5.3E-10 1.2E-14 108.0 5.8 51 79-129 3-60 (378)
32 PRK14291 chaperone protein Dna 99.0 7.7E-10 1.7E-14 106.9 6.7 52 78-129 2-60 (382)
33 PRK14281 chaperone protein Dna 99.0 9.4E-10 2E-14 106.9 6.2 52 78-129 2-61 (397)
34 PRK14289 chaperone protein Dna 98.9 1.1E-09 2.3E-14 105.8 6.3 54 76-129 2-63 (386)
35 COG5407 SEC63 Preprotein trans 98.9 9.3E-10 2E-14 109.6 5.0 110 77-209 96-223 (610)
36 KOG0715 Molecular chaperone (D 98.9 1.8E-09 3.9E-14 101.5 6.4 54 75-128 39-99 (288)
37 PRK14284 chaperone protein Dna 98.9 1.8E-09 3.9E-14 104.7 6.4 56 79-136 1-64 (391)
38 TIGR02349 DnaJ_bact chaperone 98.9 2.2E-09 4.7E-14 102.3 6.1 50 80-129 1-57 (354)
39 PRK14290 chaperone protein Dna 98.9 2.5E-09 5.5E-14 102.7 6.4 51 79-129 3-62 (365)
40 PRK14292 chaperone protein Dna 98.8 3.4E-09 7.3E-14 101.8 5.7 51 79-129 2-59 (371)
41 PRK14293 chaperone protein Dna 98.8 5.7E-09 1.2E-13 100.6 6.6 51 79-129 3-60 (374)
42 PHA03102 Small T antigen; Revi 98.8 7.6E-09 1.6E-13 90.0 6.2 55 78-132 4-64 (153)
43 KOG0712 Molecular chaperone (D 98.8 4.1E-09 9E-14 101.5 4.9 53 77-129 2-59 (337)
44 COG2214 CbpA DnaJ-class molecu 98.8 1.5E-08 3.3E-13 84.6 6.2 56 77-132 4-68 (237)
45 PTZ00341 Ring-infected erythro 98.5 1.2E-07 2.7E-12 101.4 6.4 57 75-131 569-632 (1136)
46 KOG0716 Molecular chaperone (D 98.5 1.9E-07 4.1E-12 87.9 6.7 52 76-127 28-87 (279)
47 KOG0717 Molecular chaperone (D 98.5 1.2E-07 2.7E-12 94.6 5.6 54 77-130 6-68 (508)
48 TIGR03835 termin_org_DnaJ term 98.5 2E-07 4.2E-12 97.9 5.9 52 79-130 2-60 (871)
49 KOG0719 Molecular chaperone (D 98.5 2.9E-07 6.2E-12 85.6 6.2 60 78-137 13-84 (264)
50 KOG0691 Molecular chaperone (D 98.4 3.7E-07 8E-12 86.8 6.2 55 78-132 4-66 (296)
51 PHA02624 large T antigen; Prov 98.4 5.7E-07 1.2E-11 92.8 6.7 57 77-133 9-71 (647)
52 KOG0718 Molecular chaperone (D 98.3 7.8E-07 1.7E-11 89.2 6.2 56 75-130 5-71 (546)
53 PRK05014 hscB co-chaperone Hsc 98.3 1.5E-06 3.2E-11 76.3 5.8 53 79-131 1-68 (171)
54 PRK01356 hscB co-chaperone Hsc 98.1 5.4E-06 1.2E-10 72.6 5.7 52 79-130 2-66 (166)
55 PRK03578 hscB co-chaperone Hsc 98.1 7.3E-06 1.6E-10 72.5 6.0 54 78-131 5-73 (176)
56 PRK00294 hscB co-chaperone Hsc 98.0 1.1E-05 2.3E-10 71.4 5.8 55 76-130 1-70 (173)
57 KOG0624 dsRNA-activated protei 97.8 2.3E-05 5E-10 77.3 5.4 52 78-129 393-455 (504)
58 KOG0722 Molecular chaperone (D 97.8 1.4E-05 3E-10 75.7 2.6 53 77-129 31-90 (329)
59 KOG0723 Molecular chaperone (D 97.7 8.5E-05 1.8E-09 62.0 5.7 53 75-127 52-108 (112)
60 KOG0720 Molecular chaperone (D 97.7 3.7E-05 8E-10 77.1 4.0 53 75-127 231-290 (490)
61 KOG0568 Molecular chaperone (D 97.6 9.4E-05 2E-09 69.5 6.2 53 79-131 47-106 (342)
62 KOG0714 Molecular chaperone (D 97.6 5.1E-05 1.1E-09 66.7 3.4 51 78-128 2-61 (306)
63 COG1076 DjlA DnaJ-domain-conta 97.4 0.00017 3.6E-09 63.1 4.1 46 79-124 113-173 (174)
64 KOG0550 Molecular chaperone (D 97.3 0.00027 5.8E-09 70.7 4.5 59 78-136 372-439 (486)
65 KOG1789 Endocytosis protein RM 97.2 0.00056 1.2E-08 74.8 6.7 60 70-129 1272-1340(2235)
66 PF13446 RPT: A repeated domai 97.1 0.0016 3.6E-08 47.8 6.4 50 76-128 2-51 (62)
67 KOG1150 Predicted molecular ch 96.9 0.0015 3.2E-08 60.4 5.1 58 78-135 52-118 (250)
68 PRK01773 hscB co-chaperone Hsc 96.8 0.0032 7E-08 55.8 6.1 52 79-130 2-68 (173)
69 PF03656 Pam16: Pam16; InterP 96.3 0.012 2.6E-07 50.2 6.2 54 75-128 54-111 (127)
70 TIGR00714 hscB Fe-S protein as 95.7 0.016 3.4E-07 50.4 4.6 39 91-129 3-54 (157)
71 COG5269 ZUO1 Ribosome-associat 94.4 0.063 1.4E-06 51.9 5.1 56 75-130 39-107 (379)
72 COG4858 Uncharacterized membra 71.3 36 0.00079 31.7 9.2 35 94-128 22-56 (226)
73 COG5552 Uncharacterized conser 69.1 14 0.0003 29.7 5.3 45 81-125 5-53 (88)
74 KOG3442 Uncharacterized conser 66.3 14 0.00031 32.0 5.2 50 75-124 55-108 (132)
75 PF06570 DUF1129: Protein of u 62.4 27 0.00059 31.2 6.6 39 94-136 8-46 (206)
76 PF10041 DUF2277: Uncharacteri 53.5 51 0.0011 26.4 5.9 47 84-131 8-65 (78)
77 PF01102 Glycophorin_A: Glycop 43.4 15 0.00033 31.3 1.8 15 183-197 66-80 (122)
78 TIGR01337 apcB allophycocyanin 42.4 47 0.001 29.5 4.7 49 78-126 112-160 (167)
79 TIGR00696 wecB_tagA_cpsF bacte 42.0 1.3E+02 0.0028 26.7 7.4 20 90-109 55-74 (177)
80 PRK05771 V-type ATP synthase s 39.7 1.8E+02 0.0038 30.5 9.1 83 158-254 322-416 (646)
81 cd06533 Glyco_transf_WecG_TagA 38.4 1.6E+02 0.0034 25.5 7.3 20 90-109 53-72 (171)
82 PRK11427 multidrug efflux syst 38.1 46 0.001 35.8 4.7 89 157-260 6-98 (683)
83 PLN02777 photosystem I P subun 35.5 22 0.00047 32.1 1.5 66 164-233 78-143 (167)
84 PF03808 Glyco_tran_WecB: Glyc 34.9 1.6E+02 0.0035 25.4 6.9 70 90-165 55-154 (172)
85 PTZ00352 60S ribosomal protein 34.8 55 0.0012 30.6 4.0 51 86-136 137-200 (212)
86 CHL00089 apcF allophycocyanin 34.0 71 0.0015 28.6 4.5 49 78-126 113-162 (169)
87 PF08097 Toxin_26: Conotoxin T 32.5 17 0.00037 19.1 0.2 8 275-282 2-9 (11)
88 cd06572 Histidinol_dh Histidin 32.0 68 0.0015 32.3 4.5 39 90-136 36-74 (390)
89 PF14852 Fis1_TPR_N: Fis1 N-te 31.2 39 0.00086 22.8 1.9 16 258-273 1-16 (35)
90 PF09925 DUF2157: Predicted me 30.7 18 0.0004 30.5 0.3 72 181-253 36-107 (145)
91 PF06738 DUF1212: Protein of u 30.2 1.1E+02 0.0023 26.5 5.0 22 212-233 124-145 (193)
92 COG0141 HisD Histidinol dehydr 29.9 1.1E+02 0.0023 31.5 5.5 38 91-136 61-98 (425)
93 PF12725 DUF3810: Protein of u 29.1 1.8E+02 0.0038 28.2 6.7 49 78-126 81-148 (318)
94 PF15498 Dendrin: Nephrin and 28.7 72 0.0016 33.3 4.1 77 7-90 108-191 (657)
95 TIGR00069 hisD histidinol dehy 28.6 87 0.0019 31.7 4.6 38 91-136 33-70 (393)
96 PRK00877 hisD bifunctional his 27.6 92 0.002 31.8 4.6 39 90-136 64-102 (425)
97 PF07709 SRR: Seven Residue Re 27.4 33 0.00071 18.7 0.8 12 113-124 2-13 (14)
98 PRK12447 histidinol dehydrogen 26.8 1E+02 0.0022 31.6 4.7 38 90-135 57-94 (426)
99 PF00815 Histidinol_dh: Histid 26.7 90 0.002 31.7 4.3 37 90-134 49-85 (412)
100 PRK13770 histidinol dehydrogen 26.5 1E+02 0.0022 31.5 4.6 38 91-136 57-94 (416)
101 PF12200 DUF3597: Domain of un 24.7 1.9E+02 0.0042 25.1 5.4 50 75-130 69-120 (127)
102 PF05251 UPF0197: Uncharacteri 23.7 74 0.0016 25.4 2.5 32 218-249 24-63 (77)
103 PF13720 Acetyltransf_11: Udp 22.0 83 0.0018 24.6 2.5 25 95-119 35-59 (83)
104 PF08552 Kei1: Inositolphospho 21.4 1.6E+02 0.0034 26.8 4.5 67 183-269 24-101 (189)
105 PF12273 RCR: Chitin synthesis 21.2 34 0.00074 28.5 0.2 23 225-247 18-40 (130)
106 PF14490 HHH_4: Helix-hairpin- 21.1 86 0.0019 24.6 2.5 47 77-127 40-86 (94)
107 COG4877 Uncharacterized protei 20.7 1.4E+02 0.0031 22.9 3.3 30 112-143 27-56 (63)
108 PRK07027 cobalamin biosynthesi 20.5 1.2E+02 0.0025 25.5 3.2 33 85-117 8-40 (126)
109 PF03861 ANTAR: ANTAR domain; 20.0 1.8E+02 0.0039 20.8 3.7 34 93-132 12-45 (56)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=3.9e-46 Score=331.21 Aligned_cols=158 Identities=39% Similarity=0.617 Sum_probs=144.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCcc-cccccccccC---CCCCCCCCCCCChHHH
Q 023141 88 SETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGKV-VDSSIRYADV---NPVGTPGMGPMPQWLQ 163 (286)
Q Consensus 88 s~~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GKI-V~~~IRyaD~---~~v~~~~~~~~P~Wlq 163 (286)
||||||||||+|||+++++|+||++..++||+|||+|+|+||++||+||| |+++|||+|+ ++..+....+.|+|+|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~ 80 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence 68999999999999999999999999999999999999999999999999 9999999998 3334445566899999
Q ss_pred HhhhcCCceeeCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHhhhhhheeeecchhhhhHHH---
Q 023141 164 TSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNEL--- 240 (286)
Q Consensus 164 ~~ikni~~~~etPs~~~l~~~~~vfg~L~~~tl~~g~~~~~~~~~a~~~~p~lqLAlslgasIYFLnrK~~klgRA~--- 240 (286)
++ +++|++|++++|++++++||+|++|+++++ ++++|+||||+|+++||||||||+++||||+
T Consensus 81 ~~----~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~----------~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~ 146 (194)
T PF11833_consen 81 RL----LPSFDTPSSQDLLIRAAAFGALGLWSLLFP----------AASGPGLQLALGLGACIYFLNRKERKLGRAFLWT 146 (194)
T ss_pred hc----ccceeCCCcchHHHHHHHHHHHHHHHHHHc----------CCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 86 788999999999999999999999999983 2689999999999999999999999999998
Q ss_pred --HHHHHHHhhheeeeeecCh
Q 023141 241 --SAIYSFVFNLFRMSFHSRS 259 (286)
Q Consensus 241 --l~~~~~~~gs~l~~~~~~~ 259 (286)
++++||++|++++....+.
T Consensus 147 ~~~L~~G~~lGs~l~~~l~~~ 167 (194)
T PF11833_consen 147 LGGLVVGLILGSLLASWLPVD 167 (194)
T ss_pred HHHHHHHHHHHHHHHhhcccc
Confidence 5589999999998766443
No 2
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.2e-15 Score=138.79 Aligned_cols=115 Identities=23% Similarity=0.332 Sum_probs=95.3
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHHhhhhcCccccccccccc
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIRYAD 146 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L~~Rq~GKIV~~~IRyaD 146 (286)
++...||||+|||+++||..|||+|||+|..+||+|+ +.+++|++||.++.++.- |++.. +|.
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~s--reN~e------kYG- 165 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKS--RENWE------KYG- 165 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhh--HHHHH------HhC-
Confidence 5677899999999999999999999999999999875 579999999999998876 77776 665
Q ss_pred CCCCCCCCC---CCCChHHHHhhhcCCceeeCCCcchhHHHHHHHHHHHHHHH--HhcCCCCCCCCCCCCC
Q 023141 147 VNPVGTPGM---GPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTY--VNGTSTSSIAPYAGAD 212 (286)
Q Consensus 147 ~~~v~~~~~---~~~P~Wlq~~ikni~~~~etPs~~~l~~~~~vfg~L~~~tl--~~g~~~~~~~~~a~~~ 212 (286)
+|.++.+. .++|+|+.+. +......++|++++++.+ ++|.||..+..|+++.
T Consensus 166 -~PDGpq~~s~GIALPk~Ivd~-------------~~s~~vl~~y~l~f~vilp~~v~~ww~rs~~yt~d~ 222 (230)
T KOG0721|consen 166 -NPDGPQATSFGIALPKWIVDK-------------EGSPGVLGFYGLVFGVILPVFVGRWWYRSRGYTGDG 222 (230)
T ss_pred -CCCCccchhhHhhhHHHHHhc-------------CCCchHHHHHHHHHHhHhHHHHHHHHHhhhcccCCc
Confidence 35555444 4599999883 455567888999988887 8899999998887654
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.2e-12 Score=127.06 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=53.4
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDD--------QEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD--------~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
|...|.|++|||+++||.||||+|||+|.++|||| +++|++|++|||+|.+.+- |....
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eK--Ra~YD 67 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEK--RAAYD 67 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHH--HHHhh
Confidence 56789999999999999999999999999999997 3789999999999999876 66555
No 4
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.19 E-value=5.5e-11 Score=86.32 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=47.5
Q ss_pred chHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHHHhh
Q 023141 80 NALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQ 131 (286)
Q Consensus 80 dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~L~~ 131 (286)
|||++|||+++++.+||++||+++++++|||. +.++.|++||+.|..+.-|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 79999999999999999999999999999874 57999999999999877644
No 5
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.18 E-value=3.2e-11 Score=86.00 Aligned_cols=49 Identities=29% Similarity=0.470 Sum_probs=44.8
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhH
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMR 127 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~ 127 (286)
.|+|++|||+++++.+||++||+++.++||+|. +.+.+|++||+.|.++
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~ 58 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCC
Confidence 489999999999999999999999999999874 5789999999999753
No 6
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.8e-11 Score=116.05 Aligned_cols=59 Identities=27% Similarity=0.373 Sum_probs=53.4
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
...+|+|++|||+.+||+.|||+|||+|..+||||+ ++|++|++||++|.++.+ |+...
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpek--Rk~YD 79 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEK--RKHYD 79 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHH
Confidence 356899999999999999999999999999999974 789999999999999987 66554
No 7
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.17 E-value=4.6e-11 Score=117.40 Aligned_cols=57 Identities=21% Similarity=0.291 Sum_probs=51.7
Q ss_pred CCCCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHhHHH
Q 023141 73 PFEMSVENALKLLGVSETASFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 73 ~~~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD----~~~~~~IeaAYD~Ilm~~L 129 (286)
+..|...|+|++|||+++||.+|||+|||+|..+|||| +++|++|++|||.|.++..
T Consensus 22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~k 82 (421)
T PTZ00037 22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEK 82 (421)
T ss_pred cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHH
Confidence 34566789999999999999999999999999999997 4899999999999998765
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=4e-11 Score=115.66 Aligned_cols=59 Identities=29% Similarity=0.389 Sum_probs=52.2
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
|+..|+|++|||+++||.+|||+|||+|..+||+|. ++|++|++|||.|.++.- |+...
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~K--R~~YD 66 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK--RKQYD 66 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHH--hhhhh
Confidence 567899999999999999999999999999999983 689999999999999765 44443
No 9
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.14 E-value=8.7e-11 Score=98.08 Aligned_cols=51 Identities=33% Similarity=0.399 Sum_probs=48.1
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHH
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLL 125 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD----~~~~~~IeaAYD~Il 125 (286)
.|+.+++|++|||+++||.+||+++|++|+.+||+| ++.+++|++|||.|+
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999987 468999999999985
No 10
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=7e-11 Score=113.74 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=47.9
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
..|+|++|||+++||.+|||+|||+|..+||||. ++|++|++|||.|.++.-
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~k 61 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKK 61 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHH
Confidence 4799999999999999999999999999999983 579999999999998765
No 11
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.13 E-value=8.7e-11 Score=82.21 Aligned_cols=46 Identities=28% Similarity=0.457 Sum_probs=42.7
Q ss_pred chHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHH
Q 023141 80 NALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLL 125 (286)
Q Consensus 80 dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Il 125 (286)
|||++|||+++++.+||+++|++|+++||||. +.+.+|++||+.|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999874 46899999999985
No 12
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.12 E-value=1e-10 Score=108.53 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=49.5
Q ss_pred CCCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHhH
Q 023141 74 FEMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------------EAIAQVEAAYDMLLMR 127 (286)
Q Consensus 74 ~~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------------~~~~~IeaAYD~Ilm~ 127 (286)
..++.+|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|..+
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 36888999999999999999999999999999999985 5799999999999743
No 13
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1e-10 Score=112.72 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=49.7
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
|+..|+|++|||+++||.+|||+|||+|.++||+|. ++|++|++|||+|.+...
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 62 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKK 62 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHH
Confidence 567899999999999999999999999999999974 689999999999998765
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1.2e-10 Score=108.74 Aligned_cols=54 Identities=28% Similarity=0.384 Sum_probs=49.6
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
|+..|+|++|||+++||.+|||+|||+|.++||+|. +++++|++|||.|.+...
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~k 61 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEK 61 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHH
Confidence 556899999999999999999999999999999973 689999999999998765
No 15
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.11 E-value=1.1e-10 Score=112.80 Aligned_cols=59 Identities=32% Similarity=0.347 Sum_probs=52.0
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD-------~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
|..+|+|++|||+++||.+|||+|||+|..+||+| +++|++|++|||+|.+... |+...
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k--R~~YD 66 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQK--RAAYD 66 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhh--hhhHh
Confidence 45689999999999999999999999999999998 3789999999999998875 44443
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.3e-10 Score=111.93 Aligned_cols=54 Identities=30% Similarity=0.410 Sum_probs=49.4
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
|...|+|++|||+++||.+|||+|||+|..+||+|. ++|++|++|||.|.++..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~k 61 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQK 61 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhH
Confidence 456799999999999999999999999999999983 679999999999998765
No 17
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.1e-10 Score=112.08 Aligned_cols=58 Identities=26% Similarity=0.371 Sum_probs=51.1
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHHHhhhhcC
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQRRAG 135 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~L~~Rq~G 135 (286)
|...|+|++|||+++||.+|||+|||+|.++||+|. ++|++|++|||.|.+... |+..
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~k--R~~Y 67 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQK--RAMY 67 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhh--HHHH
Confidence 566899999999999999999999999999999974 579999999999998765 4444
No 18
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=2.3e-10 Score=110.33 Aligned_cols=54 Identities=30% Similarity=0.404 Sum_probs=49.5
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
|...|+|++|||+++||.+|||+||++|.++||+|. ++|++|++|||.|.++..
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQK 61 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhH
Confidence 455799999999999999999999999999999983 789999999999988765
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=2.1e-10 Score=110.50 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=49.4
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
|.+.|+|++|||+++||.+|||+||++|..+||+|. ++|++|++|||.|.+...
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~k 62 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEK 62 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHH
Confidence 446899999999999999999999999999999984 689999999999988765
No 20
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=1.8e-10 Score=111.83 Aligned_cols=54 Identities=30% Similarity=0.276 Sum_probs=49.1
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
+...|+|++|||+++||.+|||+|||+|..+||||. ++|++|++|||+|.++.-
T Consensus 6 ~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~K 67 (392)
T PRK14279 6 WVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAK 67 (392)
T ss_pred hcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhh
Confidence 345899999999999999999999999999999963 679999999999998765
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=2.8e-10 Score=109.27 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=49.5
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
|+..|+|++|||+++||.+|||+|||+|..+||+|. ++|++|++|||.|.+...
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 62 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQK 62 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhh
Confidence 566899999999999999999999999999999984 578999999999998776
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=4.4e-10 Score=107.92 Aligned_cols=54 Identities=24% Similarity=0.352 Sum_probs=49.6
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
|...|+|++|||+++||.+|||+|||+|..+||+|. ++|++|++|||+|.+...
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~ 62 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKK 62 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHH
Confidence 566899999999999999999999999999999873 679999999999998776
No 23
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=4.5e-10 Score=108.18 Aligned_cols=51 Identities=27% Similarity=0.416 Sum_probs=47.8
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHhHHH
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD-------~~~~~~IeaAYD~Ilm~~L 129 (286)
.|+|++|||+++||.+|||+|||+|.++||+| ++++++|++|||+|.++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~ 60 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQK 60 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhH
Confidence 79999999999999999999999999999998 3689999999999998766
No 24
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=3e-10 Score=109.29 Aligned_cols=52 Identities=27% Similarity=0.389 Sum_probs=47.7
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
..|+|++|||+++||.+|||+|||+|.++||||. ++|++|++|||.|.++.-
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 61 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNK 61 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcch
Confidence 3799999999999999999999999999999974 579999999999998754
No 25
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=3.7e-10 Score=109.53 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=48.3
Q ss_pred ChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 77 s~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
...|+|++|||+++||.+|||+|||+|..+||+|. ++|++|++|||+|.++.-
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 67 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKK 67 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhh
Confidence 35799999999999999999999999999999983 689999999999998743
No 26
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.02 E-value=3.9e-10 Score=108.77 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=49.1
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
|...|+|++|||+++||.+|||+|||+|.++||+|. +++++|++|||.|.+...
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 62 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQK 62 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhh
Confidence 455799999999999999999999999999999973 679999999999998765
No 27
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=4.8e-10 Score=108.47 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=48.1
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
..|+|++|||+++||++|||+|||+|.++||+|. ++|++|++|||+|.+...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k 63 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQK 63 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHH
Confidence 4799999999999999999999999999999973 579999999999998766
No 28
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=4.5e-10 Score=108.59 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=48.0
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
..|+|++|||+++||.+|||+||++|.++||+|. ++|++|++|||.|.++.-
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~k 62 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEK 62 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHh
Confidence 4699999999999999999999999999999984 679999999999988765
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=4.8e-10 Score=108.17 Aligned_cols=59 Identities=29% Similarity=0.351 Sum_probs=51.3
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
|+..|+|++|||+++||.+|||+|||+|..+||+|. ++|++|++|||+|.+..- |....
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~k--r~~yD 67 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEK--RARYD 67 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhh--hhhhh
Confidence 456899999999999999999999999999999974 579999999999988753 54444
No 30
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.99 E-value=8.1e-10 Score=103.70 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=48.6
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
|+..|+|++|||+++||.+|||+|||+|..+||+|. +++++|++|||.|.+..-
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~k 61 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQR 61 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHH
Confidence 455799999999999999999999999999999982 689999999999987553
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=5.3e-10 Score=107.99 Aligned_cols=51 Identities=31% Similarity=0.363 Sum_probs=47.2
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
.|+|++|||+++||.+|||+|||+|.++||+|. ++|++|++|||.|.+...
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~ 60 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEK 60 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhh
Confidence 699999999999999999999999999999983 579999999999988765
No 32
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=7.7e-10 Score=106.93 Aligned_cols=52 Identities=25% Similarity=0.388 Sum_probs=48.2
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHhHHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD-------~~~~~~IeaAYD~Ilm~~L 129 (286)
..|+|++|||+++||.+|||+|||+|.++||+| +++|++|++|||+|.+...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~k 60 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEK 60 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 379999999999999999999999999999998 3689999999999998765
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.95 E-value=9.4e-10 Score=106.92 Aligned_cols=52 Identities=29% Similarity=0.404 Sum_probs=47.9
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
..|+|++|||+++||.+|||+|||+|.++||+|. +++++|++|||.|.+...
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~ 61 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDK 61 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhh
Confidence 3699999999999999999999999999999973 679999999999998766
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=1.1e-09 Score=105.83 Aligned_cols=54 Identities=30% Similarity=0.376 Sum_probs=49.0
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L 129 (286)
|...|+|++|||+++||.+||++||++|.++||+|. ++|++|++|||+|.++..
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 63 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDK 63 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHH
Confidence 346799999999999999999999999999999984 679999999999998754
No 35
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.92 E-value=9.3e-10 Score=109.60 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=83.2
Q ss_pred ChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHHHhHHHhhhhcCcccccccc
Q 023141 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIR 143 (286)
Q Consensus 77 s~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------------~~~~~IeaAYD~Ilm~~L~~Rq~GKIV~~~IR 143 (286)
...||||+|||+.++|.+|||++||+|.-+||+|+ ++-.+|.+||+.+.+++- |++.- .
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~--renyl------~ 167 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKR--RENYL------N 167 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHH--HHHHH------h
Confidence 35799999999999999999999999999999985 567899999999999876 66664 4
Q ss_pred cccCCCCCCC---CCCCCChHHHHhhhcCCceeeCCCcchhHHHHHHHHHHHHHHH--HhcCCCCCCCCCC
Q 023141 144 YADVNPVGTP---GMGPMPQWLQTSLKKSTVSVENPSTGDLGIQAGVYGALMVLTY--VNGTSTSSIAPYA 209 (286)
Q Consensus 144 yaD~~~v~~~---~~~~~P~Wlq~~ikni~~~~etPs~~~l~~~~~vfg~L~~~tl--~~g~~~~~~~~~a 209 (286)
|. .|..++ -..++|.|+.+ .+.-+.-.+.|++|.++.+ +++-||...-.|.
T Consensus 168 yG--tPd~pQhts~gIAlPk~iv~-------------se~s~y~~v~Y~lllGv~LPy~v~rwW~~~r~yt 223 (610)
T COG5407 168 YG--TPDSPQHTSEGIALPKVIVR-------------SERSMYAFVMYSLLLGVFLPYWVYRWWREIRDYT 223 (610)
T ss_pred cC--CCCCCccccceeecchheec-------------CCCCceeHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 43 122222 22558999776 2333356678999987776 8888887655454
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.8e-09 Score=101.54 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=49.0
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHH
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRS 128 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~ 128 (286)
.+..+|||++|||+++|+..|||.||..|.++||||. ++|.+|.+|||.|..+.
T Consensus 39 ~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~e 99 (288)
T KOG0715|consen 39 IISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEE 99 (288)
T ss_pred cCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHH
Confidence 5555699999999999999999999999999999984 78999999999998753
No 37
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1.8e-09 Score=104.69 Aligned_cols=56 Identities=29% Similarity=0.396 Sum_probs=49.5
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
.|+|++|||+++||.+|||+|||+|.++||+|. ++|++|++|||.|.+.. +|+...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~--kR~~YD 64 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQ--KRESYD 64 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 389999999999999999999999999999983 58999999999999873 355554
No 38
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.89 E-value=2.2e-09 Score=102.30 Aligned_cols=50 Identities=28% Similarity=0.419 Sum_probs=46.3
Q ss_pred chHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 80 NALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 80 dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
|+|++|||+++||.+|||+||++|.++||+|. ++|++|++|||.|.+...
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~ 57 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEK 57 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHH
Confidence 78999999999999999999999999999974 589999999999988765
No 39
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2.5e-09 Score=102.71 Aligned_cols=51 Identities=25% Similarity=0.386 Sum_probs=47.0
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHHH
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~L 129 (286)
.|+|++|||+++||.+||++|||+|..+||+|. ++|++|++|||.|.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~ 62 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhh
Confidence 699999999999999999999999999999863 678999999999998765
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=3.4e-09 Score=101.81 Aligned_cols=51 Identities=37% Similarity=0.423 Sum_probs=46.8
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
.|+|++|||+++||.+|||+||++|.++||+|. +++++|++|||.|.+...
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~ 59 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEK 59 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhh
Confidence 489999999999999999999999999999973 679999999999987654
No 41
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.83 E-value=5.7e-09 Score=100.60 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=47.6
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
.|+|++|||+++||.+||++||++|.++||+|. +++++|++|||.|.++..
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~ 60 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPET 60 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHH
Confidence 699999999999999999999999999999983 789999999999998765
No 42
>PHA03102 Small T antigen; Reviewed
Probab=98.81 E-value=7.6e-09 Score=89.98 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=49.0
Q ss_pred hhchHHHhCCCCCC--CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHhHHHhhh
Q 023141 78 VENALKLLGVSETA--SFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMRSLTQR 132 (286)
Q Consensus 78 ~~dPYevLGVs~~A--S~eEIk~Arr~L~~~y~gD----~~~~~~IeaAYD~Ilm~~L~~R 132 (286)
.+..|++|||+++| |.+|||+||+++.++|||| ++++++|++||+.|.....+.+
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 46799999999999 9999999999999999987 4789999999999987766443
No 43
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.1e-09 Score=101.51 Aligned_cols=53 Identities=26% Similarity=0.354 Sum_probs=48.3
Q ss_pred ChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHhHHH
Q 023141 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-----EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 77 s~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-----~~~~~IeaAYD~Ilm~~L 129 (286)
.+..-|.+|||+++||.+|||+|||+|..+||+|+ ++|++|.+|||.|.+..-
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ek 59 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEK 59 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 35678999999999999999999999999999985 899999999999998543
No 44
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.5e-08 Score=84.56 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=50.4
Q ss_pred ChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHHHhhh
Q 023141 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQR 132 (286)
Q Consensus 77 s~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~L~~R 132 (286)
...|+|++|||.++|+.+||++||+++..+||+|. +++.+|++||+.+.....+..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~ 68 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAE 68 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 46799999999999999999999999999999862 789999999999998877553
No 45
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.52 E-value=1.2e-07 Score=101.36 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=51.3
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHHhh
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLTQ 131 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L~~ 131 (286)
-+.+.|.|++|||+++||.+|||+||++|..+||||. ++|++|++||+.|.+...|+
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 3456799999999999999999999999999999983 67999999999999988743
No 46
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.9e-07 Score=87.94 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=46.9
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMR 127 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~ 127 (286)
....|-|.+||+.++|+.||||+|||.|+++||+|. ++|++||.||..|.+.
T Consensus 28 ~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 28 VIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDP 87 (279)
T ss_pred cchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcCh
Confidence 347899999999999999999999999999998863 6899999999998765
No 47
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-07 Score=94.57 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=49.1
Q ss_pred ChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHHHh
Q 023141 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 77 s~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~L~ 130 (286)
...+.|++|||..+|+.+|||++||+|.-+||||+ +.|+.|++|||+|.+.+=|
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhh
Confidence 45789999999999999999999999999999986 6899999999999987543
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.46 E-value=2e-07 Score=97.94 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=47.9
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHHh
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L~ 130 (286)
.|+|++|||+++|+.+|||+|||+|.++||+|. +++++|+.||+.|.+...|
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KR 60 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKR 60 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHH
Confidence 699999999999999999999999999999985 4689999999999987763
No 49
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.9e-07 Score=85.62 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=51.3
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHHHhHHHhh--hhcCcc
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ----------EAIAQVEAAYDMLLMRSLTQ--RRAGKV 137 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~----------~~~~~IeaAYD~Ilm~~L~~--Rq~GKI 137 (286)
..|||++|||.++|+..||++||++|.-+||||. ++|++++.||.+|.++.-|+ -+.|+|
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 3499999999999999999999999999999984 47999999999998876533 345554
No 50
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.7e-07 Score=86.82 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=50.3
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHHHhHHHhhh
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ--------EAIAQVEAAYDMLLMRSLTQR 132 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~--------~~~~~IeaAYD~Ilm~~L~~R 132 (286)
+.|+|.+|||+++|+..||++||+.+.-+||||+ ++|.++..||++|.++.+|.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~ 66 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAA 66 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5799999999999999999999999999999874 689999999999999988653
No 51
>PHA02624 large T antigen; Provisional
Probab=98.37 E-value=5.7e-07 Score=92.81 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=51.3
Q ss_pred ChhchHHHhCCCCCC--CHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHhHHHhhhh
Q 023141 77 SVENALKLLGVSETA--SFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMRSLTQRR 133 (286)
Q Consensus 77 s~~dPYevLGVs~~A--S~eEIk~Arr~L~~~y~gD----~~~~~~IeaAYD~Ilm~~L~~Rq 133 (286)
..++.|++|||+++| |.+|||+|||++.++|||| ++++++|++||+.|...--+.|.
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 357999999999999 9999999999999999986 58999999999999887666664
No 52
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=7.8e-07 Score=89.21 Aligned_cols=56 Identities=21% Similarity=0.285 Sum_probs=50.0
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-----------HHHHHHHHHHHHHHhHHHh
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-----------EAIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-----------~~~~~IeaAYD~Ilm~~L~ 130 (286)
+.++.|-|..|+|++|||.|||++|||++..-||||+ +.|..|..|||.|.+.+-|
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kR 71 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKR 71 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 4566799999999999999999999999999999974 5799999999999987653
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.26 E-value=1.5e-06 Score=76.32 Aligned_cols=53 Identities=13% Similarity=0.184 Sum_probs=45.5
Q ss_pred hchHHHhCCCCC--CCHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHHHhHHHhh
Q 023141 79 ENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLTQ 131 (286)
Q Consensus 79 ~dPYevLGVs~~--AS~eEIk~Arr~L~~~y~gD~-------------~~~~~IeaAYD~Ilm~~L~~ 131 (286)
.|+|++|||+++ ++.++|+++|++|.++||||. +.+..||+||++|...-.|.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 389999999996 788999999999999999984 24678999999999876543
No 54
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.09 E-value=5.4e-06 Score=72.62 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=45.1
Q ss_pred hchHHHhCCCCC--CCHHHHHHHHHHHHHhCCCCH-----H------HHHHHHHHHHHHHhHHHh
Q 023141 79 ENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-----E------AIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 79 ~dPYevLGVs~~--AS~eEIk~Arr~L~~~y~gD~-----~------~~~~IeaAYD~Ilm~~L~ 130 (286)
.|+|++|||+++ ++.++|+++|++|..+||||. + .+..||+||++|.....|
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~R 66 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKR 66 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 589999999997 889999999999999999984 1 256999999999877653
No 55
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.06 E-value=7.3e-06 Score=72.46 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=45.7
Q ss_pred hhchHHHhCCCCC--CCHHHHHHHHHHHHHhCCCCH--------H-----HHHHHHHHHHHHHhHHHhh
Q 023141 78 VENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ--------E-----AIAQVEAAYDMLLMRSLTQ 131 (286)
Q Consensus 78 ~~dPYevLGVs~~--AS~eEIk~Arr~L~~~y~gD~--------~-----~~~~IeaAYD~Ilm~~L~~ 131 (286)
..|+|++|||++. ++.++|+++|++|.+++|||. + ....||.||++|...-.|.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 3799999999996 678999999999999999984 1 2479999999998876533
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.00 E-value=1.1e-05 Score=71.40 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=47.9
Q ss_pred CChhchHHHhCCCCC--CCHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHHHhHHHh
Q 023141 76 MSVENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 76 ms~~dPYevLGVs~~--AS~eEIk~Arr~L~~~y~gD~-------------~~~~~IeaAYD~Ilm~~L~ 130 (286)
|...|+|++||+++. .+.++|+++|++|.++||||. +.+..||.||++|.....|
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~R 70 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRR 70 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence 567899999999999 568999999999999999984 2468999999999987653
No 57
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.83 E-value=2.3e-05 Score=77.27 Aligned_cols=52 Identities=25% Similarity=0.306 Sum_probs=47.0
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-----------HHHHHHHHHHHHHHhHHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ-----------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-----------~~~~~IeaAYD~Ilm~~L 129 (286)
..|.|+||||.++||..||-+|||++.++.|||. ++|-.|.+|-|+|.++..
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~Ek 455 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEK 455 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence 4699999999999999999999999999999972 468899999999998765
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.4e-05 Score=75.72 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=46.6
Q ss_pred ChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhHHH
Q 023141 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 77 s~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~~L 129 (286)
..+|=|++|||+++|+..||.+||+.|..+||||. +.|..|..||+.+-++.-
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~ 90 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNET 90 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhh
Confidence 35899999999999999999999999999999983 568999999998876543
No 59
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=8.5e-05 Score=61.96 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=48.6
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHhH
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDD----QEAIAQVEAAYDMLLMR 127 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD----~~~~~~IeaAYD~Ilm~ 127 (286)
+|+..++-.||||+|.++.+-||+|+|+++-..|+| +....+||+|+|.+.-.
T Consensus 52 kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 52 KMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred ccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 899999999999999999999999999999888876 58899999999998643
No 60
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=3.7e-05 Score=77.14 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=47.6
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhH
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCKDDQ-------EAIAQVEAAYDMLLMR 127 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~-------~~~~~IeaAYD~Ilm~ 127 (286)
..+..|||.+|||..+.|.++||+.||++..--|||+ +.|+.++.|||+|.+.
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~ 290 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDS 290 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcch
Confidence 3447899999999999999999999999999989885 7899999999999754
No 61
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=9.4e-05 Score=69.54 Aligned_cols=53 Identities=23% Similarity=0.413 Sum_probs=48.6
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHhHHHhh
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDD-------QEAIAQVEAAYDMLLMRSLTQ 131 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD-------~~~~~~IeaAYD~Ilm~~L~~ 131 (286)
.+-|++|||.++|+.+|++.|+-.|.++||+| .+.|.+|++||..++.+.+.+
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999986 478999999999999988755
No 62
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=5.1e-05 Score=66.74 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=42.7
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHH
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRS 128 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~ 128 (286)
..|.|++|||.++|+.+||++||+.+..++|+|+ .++.+|.+|||.+...+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~ 61 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPK 61 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHH
Confidence 4689999999999999999999999999999874 23667777888665443
No 63
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00017 Score=63.09 Aligned_cols=46 Identities=33% Similarity=0.540 Sum_probs=42.7
Q ss_pred hchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHH
Q 023141 79 ENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------------EAIAQVEAAYDML 124 (286)
Q Consensus 79 ~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------------~~~~~IeaAYD~I 124 (286)
.|+|++||+...+++++|+++|+.++.++|+|. +++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999874 5789999999876
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00027 Score=70.75 Aligned_cols=59 Identities=27% Similarity=0.279 Sum_probs=50.9
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
..|.|++|||+.+||.+||++||+.+.-.||+|. .+|.+|-+||..+-+..=+.|.-..
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 5799999999999999999999999999999973 5799999999999876665565543
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00056 Score=74.84 Aligned_cols=60 Identities=28% Similarity=0.374 Sum_probs=50.8
Q ss_pred CCCCCCCChhchHHHhCCCCC----CCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHhHHH
Q 023141 70 DSAPFEMSVENALKLLGVSET----ASFDEILRAKNSIVANCKDDQ-----EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 70 ~~~~~~ms~~dPYevLGVs~~----AS~eEIk~Arr~L~~~y~gD~-----~~~~~IeaAYD~Ilm~~L 129 (286)
+..|..|++.++||+|.|+-+ ...+.||++|++|.++||+|+ ++|++||+|||.|..+..
T Consensus 1272 ekKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ta 1340 (2235)
T KOG1789|consen 1272 EKKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSETA 1340 (2235)
T ss_pred hcCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 345778999999999999754 334789999999999999996 789999999999975554
No 66
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.14 E-value=0.0016 Score=47.77 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=42.2
Q ss_pred CChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 023141 76 MSVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRS 128 (286)
Q Consensus 76 ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~ 128 (286)
|+.+++|+.|||+++.+.|+|..+|+..++ .|+.......+|...|-+.|
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~---~~P~~~~~~r~AL~~Ia~~R 51 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN---DDPSQKDTLREALRVIAESR 51 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH---cChHhHHHHHHHHHHHHHHc
Confidence 789999999999999999999999999988 45566777777777776543
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0015 Score=60.37 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=49.7
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHHHhHHHhhhhcC
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQ---------EAIAQVEAAYDMLLMRSLTQRRAG 135 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~---------~~~~~IeaAYD~Ilm~~L~~Rq~G 135 (286)
.-|||++|.|+|+.+.|+|++-|+.|.---|||+ .+|..|.+||..|..+..++|-..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~ 118 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD 118 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 3589999999999999999999999988877763 568999999999999887777543
No 68
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.75 E-value=0.0032 Score=55.75 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=45.7
Q ss_pred hchHHHhCCCCC--CCHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHHHhHHHh
Q 023141 79 ENALKLLGVSET--ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 79 ~dPYevLGVs~~--AS~eEIk~Arr~L~~~y~gD~-------------~~~~~IeaAYD~Ilm~~L~ 130 (286)
.|+|++||+++. .+..++++.|+.|.+++|||. +.-..||.||.+|...-.|
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~R 68 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILR 68 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHH
Confidence 589999999998 999999999999999999984 2468999999999876543
No 69
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.25 E-value=0.012 Score=50.20 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=41.0
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHhHH
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANCK----DDQEAIAQVEAAYDMLLMRS 128 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~----gD~~~~~~IeaAYD~Ilm~~ 128 (286)
.|+.+++.+||||++..+.|||++-|++|.+... |....-.+|..|.|.|..+-
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999865 45688899999999997553
No 70
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=95.68 E-value=0.016 Score=50.38 Aligned_cols=39 Identities=10% Similarity=0.122 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCH-------------HHHHHHHHHHHHHHhHHH
Q 023141 91 ASFDEILRAKNSIVANCKDDQ-------------EAIAQVEAAYDMLLMRSL 129 (286)
Q Consensus 91 AS~eEIk~Arr~L~~~y~gD~-------------~~~~~IeaAYD~Ilm~~L 129 (286)
-+.++|+++|++|.++||||. +.++.||.||++|.....
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~ 54 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLM 54 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhh
Confidence 467899999999999999993 457899999999987654
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.063 Score=51.90 Aligned_cols=56 Identities=25% Similarity=0.275 Sum_probs=48.3
Q ss_pred CCChhchHHHhCCCC---CCCHHHHHHHHHHHHHhCCCCHH----------HHHHHHHHHHHHHhHHHh
Q 023141 75 EMSVENALKLLGVSE---TASFDEILRAKNSIVANCKDDQE----------AIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 75 ~ms~~dPYevLGVs~---~AS~eEIk~Arr~L~~~y~gD~~----------~~~~IeaAYD~Ilm~~L~ 130 (286)
+-...|.|.+||++. -|..++|.+|.+..+-+||||.+ .|.-|+.|||.|.+..+|
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R 107 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLR 107 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHH
Confidence 334589999999987 48899999999999999999864 689999999999987773
No 72
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=71.31 E-value=36 Score=31.72 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHH
Q 023141 94 DEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRS 128 (286)
Q Consensus 94 eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~ 128 (286)
|=|-.+-+++...++.|++.-.-+|++...|+.++
T Consensus 22 eyvh~vtkqli~~gksdeeik~Il~e~ipqIleeQ 56 (226)
T COG4858 22 EYVHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQ 56 (226)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 33455566777778888888888999999998664
No 73
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=69.07 E-value=14 Score=29.72 Aligned_cols=45 Identities=18% Similarity=0.107 Sum_probs=33.0
Q ss_pred hHHHhCCCCCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Q 023141 81 ALKLLGVSETASFDEILRAKNSIVANC----KDDQEAIAQVEAAYDMLL 125 (286)
Q Consensus 81 PYevLGVs~~AS~eEIk~Arr~L~~~y----~gD~~~~~~IeaAYD~Il 125 (286)
=-+..|.+|-|+.+||+.|-...+++. |+.+...+..|+|.+.|.
T Consensus 5 Ik~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia 53 (88)
T COG5552 5 IKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA 53 (88)
T ss_pred hHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH
Confidence 346789999999999999977777775 445555666666666653
No 74
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.27 E-value=14 Score=32.01 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=40.6
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHH
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVANC----KDDQEAIAQVEAAYDML 124 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~y----~gD~~~~~~IeaAYD~I 124 (286)
.|+.+.+-.||+|++.-+.|||.+-|..|.+-. +|.-..-.+|=.|.|.|
T Consensus 55 ~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl 108 (132)
T KOG3442|consen 55 KITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL 108 (132)
T ss_pred cccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence 699999999999999999999999999999864 33334456666666665
No 75
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=62.37 E-value=27 Score=31.19 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 94 DEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 94 eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
|=+.+.++.|.+..-.|++..+-+++..|.|+.. -++|+
T Consensus 8 ~y~~~l~~~L~~~~~~e~~~e~~L~eil~~Llea----Qk~G~ 46 (206)
T PF06570_consen 8 EYIFDLRKYLRSSGVSEEEIEELLEEILPHLLEA----QKKGK 46 (206)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH----HhCCC
Confidence 4456667777555566777777777777777654 45775
No 76
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=53.53 E-value=51 Score=26.41 Aligned_cols=47 Identities=32% Similarity=0.285 Sum_probs=29.3
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHhCCC----CH-------HHHHHHHHHHHHHHhHHHhh
Q 023141 84 LLGVSETASFDEILRAKNSIVANCKD----DQ-------EAIAQVEAAYDMLLMRSLTQ 131 (286)
Q Consensus 84 vLGVs~~AS~eEIk~Arr~L~~~y~g----D~-------~~~~~IeaAYD~Ilm~~L~~ 131 (286)
.-|..|-|+.|||+.|-..-+.+-.| .. ..+++|.+|-..|| +.|-.
T Consensus 8 L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL-~~L~~ 65 (78)
T PF10041_consen 8 LRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLL-DSLPT 65 (78)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHH-HhCcc
Confidence 34778899999999996655665433 22 33455666655554 44433
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.39 E-value=15 Score=31.26 Aligned_cols=15 Identities=13% Similarity=0.270 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 023141 183 IQAGVYGALMVLTYV 197 (286)
Q Consensus 183 ~~~~vfg~L~~~tl~ 197 (286)
+.+++||++++++..
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 467778888777554
No 78
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=42.40 E-value=47 Score=29.54 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=43.6
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLM 126 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm 126 (286)
.++=|+-|||+-++.-+-|+.-++...+.+.++.+..++|+.-+|.++.
T Consensus 112 lrE~y~~LgvP~~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yFd~li~ 160 (167)
T TIGR01337 112 LKETYNSLGVPIGPTVRAIQIMKEVIISLVGPDNDAGKEIGEPFDYMCS 160 (167)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHHHHHHH
Confidence 5789999999999999999999998888888887788999999999874
No 79
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=41.95 E-value=1.3e+02 Score=26.70 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhCCC
Q 023141 90 TASFDEILRAKNSIVANCKD 109 (286)
Q Consensus 90 ~AS~eEIk~Arr~L~~~y~g 109 (286)
+++.+.+.+|.+++.++|.+
T Consensus 55 G~~~~v~~~~~~~l~~~yP~ 74 (177)
T TIGR00696 55 GGKPDVLQQLKVKLIKEYPK 74 (177)
T ss_pred CCCHHHHHHHHHHHHHHCCC
Confidence 57889999999999999854
No 80
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=39.66 E-value=1.8e+02 Score=30.51 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=42.3
Q ss_pred CChHHHHhhhcCCceeeCCCcchhH---HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHH-hhhhhhee--eec
Q 023141 158 MPQWLQTSLKKSTVSVENPSTGDLG---IQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILAS-SFGASLYF--MTR 231 (286)
Q Consensus 158 ~P~Wlq~~ikni~~~~etPs~~~l~---~~~~vfg~L~~~tl~~g~~~~~~~~~a~~~~p~lqLAl-slgasIYF--Lnr 231 (286)
-|.|.+- ...+-.++.+|.-.++= ..+..|-+++++.+- |-+=++.+.+ |+.....+ .++
T Consensus 322 N~~~~~p-FE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~g-------------D~GyGLil~l~~~~l~~~~~k~~~ 387 (646)
T PRK05771 322 NPKFIKP-FESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMMLG-------------DAGYGLLLLLIGLLLSFKLKKKSE 387 (646)
T ss_pred CCchhhh-HHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHHH-------------hHHHHHHHHHHHHHHHHhcccccH
Confidence 4556553 23334466777655542 334445555555543 3466677665 22221111 011
Q ss_pred chhhhhHHH------HHHHHHHhhheeee
Q 023141 232 KNVKLGNEL------SAIYSFVFNLFRMS 254 (286)
Q Consensus 232 K~~klgRA~------l~~~~~~~gs~l~~ 254 (286)
..+++++-+ .++.|++.|+|+..
T Consensus 388 ~~~~~~~il~~~gi~sii~G~lyG~fFG~ 416 (646)
T PRK05771 388 GLKRLLKILIYLGISTIIWGLLTGSFFGF 416 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcC
Confidence 124555554 45778888888764
No 81
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=38.35 E-value=1.6e+02 Score=25.52 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhCCC
Q 023141 90 TASFDEILRAKNSIVANCKD 109 (286)
Q Consensus 90 ~AS~eEIk~Arr~L~~~y~g 109 (286)
+++++++.+|.+++.++|.+
T Consensus 53 G~~~~~~~~~~~~l~~~yp~ 72 (171)
T cd06533 53 GAKPEVLEKAAERLRARYPG 72 (171)
T ss_pred CCCHHHHHHHHHHHHHHCCC
Confidence 58899999999999999743
No 82
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=38.14 E-value=46 Score=35.85 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=54.2
Q ss_pred CCChHHHHhhhcCCcee--eCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHhhhhhheeeecch-
Q 023141 157 PMPQWLQTSLKKSTVSV--ENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKN- 233 (286)
Q Consensus 157 ~~P~Wlq~~ikni~~~~--etPs~~~l~~~~~vfg~L~~~tl~~g~~~~~~~~~a~~~~p~lqLAlslgasIYFLnrK~- 233 (286)
..|.-++++..-+-..+ ..|+..+...+..+-+.|.+.+-+. -+.|-.-++ .+.|||+.+.+
T Consensus 6 ~~p~~~~~~~~~~~~~~~~~~P~r~~~~~r~~~a~~L~l~i~~~------------l~~P~~a~a---~~~vfivsqp~~ 70 (683)
T PRK11427 6 SLPLPVVRLLAFFHEELSERRPGRVPQTLQLWVGCLLVILISMT------------FEIPFLALS---LAVLFYGIQSNA 70 (683)
T ss_pred cCChhHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH------------cCCCHHHHH---HHHHHheeccch
Confidence 45665666543333322 3477777777776666665444432 255666666 47789999876
Q ss_pred -hhhhHHHHHHHHHHhhheeeeeecChh
Q 023141 234 -VKLGNELSAIYSFVFNLFRMSFHSRSM 260 (286)
Q Consensus 234 -~klgRA~l~~~~~~~gs~l~~~~~~~~ 260 (286)
...-+++..++|+++|..+.++..|.+
T Consensus 71 g~t~~kai~r~vgt~lg~~~~vll~~~~ 98 (683)
T PRK11427 71 FYTKFVAILFVVATVLEIGSLFLIYKWS 98 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677788877776666555543
No 83
>PLN02777 photosystem I P subunit (PSI-P)
Probab=35.52 E-value=22 Score=32.12 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=36.1
Q ss_pred HhhhcCCceeeCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHhhhhhheeeecch
Q 023141 164 TSLKKSTVSVENPSTGDLGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKN 233 (286)
Q Consensus 164 ~~ikni~~~~etPs~~~l~~~~~vfg~L~~~tl~~g~~~~~~~~~a~~~~p~lqLAlslgasIYFLnrK~ 233 (286)
+++|.+...+|.....--+.-.++.+++++|.+..=....+..|- .|++.=-+|++.+.||.+|..
T Consensus 78 ei~k~~~e~Wd~~EdK~av~~l~~aaiVal~v~~~VL~AId~lPL----lP~lLELVGigYs~WF~yRyL 143 (167)
T PLN02777 78 EIVKTVQEAWDKVEDKYAVSSLAFAGVVALWGSAGMISAIDRLPL----VPGVLELVGIGYTGWFAYKNL 143 (167)
T ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccchHHHhhhhhhhhhhhhHh
Confidence 344445555777655555455555555666655211111111111 345554559999999999854
No 84
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.89 E-value=1.6e+02 Score=25.42 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHhCCC-----------C----HHHHHHHHHH------------HHHHHhHHHhhhhcCcc---cc
Q 023141 90 TASFDEILRAKNSIVANCKD-----------D----QEAIAQVEAA------------YDMLLMRSLTQRRAGKV---VD 139 (286)
Q Consensus 90 ~AS~eEIk~Arr~L~~~y~g-----------D----~~~~~~IeaA------------YD~Ilm~~L~~Rq~GKI---V~ 139 (286)
+++++.++++.++|.++|.+ | ++.+++|+++ -.-+.+.+.+++....+ +-
T Consensus 55 G~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 55 GGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVG 134 (172)
T ss_pred eCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
Confidence 36788899999999999743 2 2345666665 22344555555555543 34
Q ss_pred cccccccCCCCCCCCCCCCChHHHHh
Q 023141 140 SSIRYADVNPVGTPGMGPMPQWLQTS 165 (286)
Q Consensus 140 ~~IRyaD~~~v~~~~~~~~P~Wlq~~ 165 (286)
..+.+--.+. ...|.|++++
T Consensus 135 ~~~d~~aG~~------~raP~w~~~~ 154 (172)
T PF03808_consen 135 GAFDFLAGKV------KRAPKWMRRL 154 (172)
T ss_pred chhhhhccCc------CccCHHHHHc
Confidence 4443321110 1258998875
No 85
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=34.81 E-value=55 Score=30.62 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=34.7
Q ss_pred CCCCCCCHHHHHH--HHHHHHHhCCC----------CH-HHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 86 GVSETASFDEILR--AKNSIVANCKD----------DQ-EAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 86 GVs~~AS~eEIk~--Arr~L~~~y~g----------D~-~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
||..|+|.||++. |-..+....-+ .+ ...+.=-.||..|-+++...|..|+
T Consensus 137 gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~ 200 (212)
T PTZ00352 137 GIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGK 200 (212)
T ss_pred CCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhH
Confidence 6888999999998 65433212111 11 1233345899999999999999995
No 86
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=34.03 E-value=71 Score=28.59 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=42.8
Q ss_pred hhchHHHhCCCCCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHh
Q 023141 78 VENALKLLGVSETASFDEILRAKNSIVANCK-DDQEAIAQVEAAYDMLLM 126 (286)
Q Consensus 78 ~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~-gD~~~~~~IeaAYD~Ilm 126 (286)
.++=|+.|||+..+.-+-|+.-+..-++... .|.+..+.|+.-+|.++.
T Consensus 113 lrE~Y~~LgvP~~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~yFd~l~~ 162 (169)
T CHL00089 113 LKDTYNSLGVPIAPTVRSIELLKEIIKEEIKSQNIDAHDYIDEPFQYMIK 162 (169)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999988887 465778999999999873
No 87
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=32.46 E-value=17 Score=19.08 Aligned_cols=8 Identities=50% Similarity=1.750 Sum_probs=6.7
Q ss_pred cccccccc
Q 023141 275 CCPLLGYS 282 (286)
Q Consensus 275 ~~~~~~~~ 282 (286)
|||.+-|-
T Consensus 2 ccpviryc 9 (11)
T PF08097_consen 2 CCPVIRYC 9 (11)
T ss_pred Ccchhhee
Confidence 99998874
No 88
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=32.01 E-value=68 Score=32.35 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 90 ~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
.-|.+||++|++.+ |++..+.|+.|++.| +++.++|..+
T Consensus 36 ~vs~~ei~~A~~~~------~~~~~~ai~~A~~nI--~~fh~~q~~~ 74 (390)
T cd06572 36 RVSEEEIDAAYAAV------DPELKEAIELAAENI--RAFHEAQLPK 74 (390)
T ss_pred ccCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 45789999998776 888999999999999 5666666655
No 89
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=31.24 E-value=39 Score=22.76 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.5
Q ss_pred ChhHHHHHHHHhhCCC
Q 023141 258 RSMSFLYFWYNFHAGS 273 (286)
Q Consensus 258 ~~~~~~~~~~~~~~~~ 273 (286)
|+.-|+|+|.|.|-.+
T Consensus 1 ~qt~FnyAw~Lv~S~~ 16 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSNN 16 (35)
T ss_dssp -HHHHHHHHHHHHSSS
T ss_pred CcchhHHHHHHhcCCC
Confidence 5678999999998654
No 90
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.67 E-value=18 Score=30.46 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHhhhhhheeeecchhhhhHHHHHHHHHHhhheee
Q 023141 181 LGIQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILASSFGASLYFMTRKNVKLGNELSAIYSFVFNLFRM 253 (286)
Q Consensus 181 l~~~~~vfg~L~~~tl~~g~~~~~~~~~a~~~~p~lqLAlslgasIYFLnrK~~klgRA~l~~~~~~~gs~l~ 253 (286)
+..-++++.+++++.++-..|+.-+. ..--......+.++.+...++..++...++++.+++.+..+|..+.
T Consensus 36 l~~lGall~~~gii~fvA~nW~~i~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ga~ia 107 (145)
T PF09925_consen 36 LLYLGALLLGLGIILFVAANWDDIPR-LAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVLFGALIA 107 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHH
Confidence 44556666667666666555422100 0000001111222333333444577788999987777666665554
No 91
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=30.18 E-value=1.1e+02 Score=26.52 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=15.1
Q ss_pred CCchHHHHHhhhhhheeeecch
Q 023141 212 DVPGLILASSFGASLYFMTRKN 233 (286)
Q Consensus 212 ~~p~lqLAlslgasIYFLnrK~ 233 (286)
+...+.++.-+|..+|++....
T Consensus 124 ~~~~~~~a~i~g~~~~~~~~~~ 145 (193)
T PF06738_consen 124 SWIDMIVAFILGLLVGLLRQLL 145 (193)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777643
No 92
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=29.89 E-value=1.1e+02 Score=31.48 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 91 ASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 91 AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
.|.+||..|++++ |++..+.|+.|++.| +++.++|+.+
T Consensus 61 Vs~~ei~aA~~~v------~~~~~eai~~A~~~I--~~fH~~Q~p~ 98 (425)
T COG0141 61 VSAAEIDAAYQRL------DPEVKEALEVAAENI--EAFHEAQLPK 98 (425)
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHH--HHHHHhhCCC
Confidence 6889999998876 788999999999999 7777777763
No 93
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=29.14 E-value=1.8e+02 Score=28.21 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=37.7
Q ss_pred hhchHHHhCCCC-CCCHHHHHHHHHHHHHhC-------CCC-----------HHHHHHHHHHHHHHHh
Q 023141 78 VENALKLLGVSE-TASFDEILRAKNSIVANC-------KDD-----------QEAIAQVEAAYDMLLM 126 (286)
Q Consensus 78 ~~dPYevLGVs~-~AS~eEIk~Arr~L~~~y-------~gD-----------~~~~~~IeaAYD~Ilm 126 (286)
..+=++.||+++ +.|.||+++--++++++- +.| ++.++++.+||+.+..
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~ 148 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAE 148 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 345678899998 899999999988887762 222 4568899999999864
No 94
>PF15498 Dendrin: Nephrin and CD2AP-binding protein, Dendrin
Probab=28.71 E-value=72 Score=33.34 Aligned_cols=77 Identities=27% Similarity=0.412 Sum_probs=50.5
Q ss_pred cccCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCccccccccccccc---cchhcccccccCCCC--CCCCCC--CCChh
Q 023141 7 SVRPNRLSPGSQIPRPPAVHHLNPTCHPTPLKPTKSELFRGLTSLSR---RTLAASGVAKAGSRA--DDSAPF--EMSVE 79 (286)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a--~~~~~~--~ms~~ 79 (286)
.-||.|+++-..-|||++..+.|+. .+-.-||++++.-+- .-+-+++..+...|. |.++|. --+.+
T Consensus 108 psrperlg~~Gr~pRp~aqpqs~pG-------aawagpwgGRrpGPPSYEAHLLLRGaAgtapRrRWDrPPPYVAPPSYe 180 (657)
T PF15498_consen 108 PSRPERLGPVGRPPRPSAQPQSDPG-------AAWAGPWGGRRPGPPSYEAHLLLRGAAGTAPRRRWDRPPPYVAPPSYE 180 (657)
T ss_pred CCChhhcccCCCCCCCcccccCCCc-------ccccccccCCCCCCccHHHHHHhhcccCccccccCCCCCCCCCCCccC
Confidence 3489999988888999988776552 122368988766532 223444545544333 555555 56788
Q ss_pred chHHHhCCCCC
Q 023141 80 NALKLLGVSET 90 (286)
Q Consensus 80 dPYevLGVs~~ 90 (286)
.|...||-.++
T Consensus 181 gPHRTLGtKRg 191 (657)
T PF15498_consen 181 GPHRTLGTKRG 191 (657)
T ss_pred CcccccccCCC
Confidence 89999998776
No 95
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=28.60 E-value=87 Score=31.70 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 91 ASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 91 AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
-|.+||++|+..+ |++..+.|+.|++.| +++.++|..+
T Consensus 33 vs~~ei~~A~~~~------~~~~~~ai~~A~~~I--~~fh~~q~~~ 70 (393)
T TIGR00069 33 VSEEEIEAAYAAV------DPELKEALELAAENI--RAFHEAQLPR 70 (393)
T ss_pred cCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 5789999998764 788999999999999 5666666654
No 96
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=27.57 E-value=92 Score=31.85 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 90 ~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
.-|.+||++|+..+ |++..+.|+.|++.| +++.++|..+
T Consensus 64 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~~I--~~Fh~~q~~~ 102 (425)
T PRK00877 64 RVSEEEIEAAYERL------DPELREALEEAAENI--RAFHEAQKPE 102 (425)
T ss_pred eeCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 35789999998764 788999999999999 5666666664
No 97
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=27.37 E-value=33 Score=18.71 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHH
Q 023141 113 AIAQVEAAYDML 124 (286)
Q Consensus 113 ~~~~IeaAYD~I 124 (286)
.+++|+.||+.|
T Consensus 2 ~~~~V~~aY~~l 13 (14)
T PF07709_consen 2 KFEKVKNAYEQL 13 (14)
T ss_pred cHHHHHHHHHhc
Confidence 467788888765
No 98
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=26.76 E-value=1e+02 Score=31.61 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcC
Q 023141 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAG 135 (286)
Q Consensus 90 ~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~G 135 (286)
.-|.+||++|++.+ |++..+.|+.|++.| +++.++|..
T Consensus 57 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~ 94 (426)
T PRK12447 57 RLSAAEIDAAVAKV------PEQVKEDIRFAQDQV--RRFAEAQRD 94 (426)
T ss_pred ccCHHHHHHHHhhC------CHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 35789999998765 788999999999999 455555544
No 99
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=26.66 E-value=90 Score=31.75 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhc
Q 023141 90 TASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRA 134 (286)
Q Consensus 90 ~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~ 134 (286)
.-|.+||++|++.+ |++..+.|+.|++.| +++.++|+
T Consensus 49 ~Vs~~ei~~A~~~l------~~~~~~Ai~~A~~~I--~~fh~~q~ 85 (412)
T PF00815_consen 49 RVSEEEIAAAYAKL------DPELREAIEQAAENI--RAFHEAQL 85 (412)
T ss_dssp B--HHHHHHHHHHS-------HHHHHHHHHHHHHH--HHHHHTT-
T ss_pred EecHHHHHhhhhcC------CHHHHHHHHHHHHHH--HHHHHHhc
Confidence 45889999999887 788999999999999 56666666
No 100
>PRK13770 histidinol dehydrogenase; Provisional
Probab=26.54 E-value=1e+02 Score=31.51 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhhhcCc
Q 023141 91 ASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQRRAGK 136 (286)
Q Consensus 91 AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~Rq~GK 136 (286)
-|.+||++|+..+ |++..+.|+.|++.| +++.++|..+
T Consensus 57 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~~ 94 (416)
T PRK13770 57 ISHEQIKAAFDTL------DEKTKQALQQSYERI--KAYQESIKQT 94 (416)
T ss_pred eCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 5889999998875 788899999999999 5565666554
No 101
>PF12200 DUF3597: Domain of unknown function (DUF3597); InterPro: IPR022016 This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 126 and 281 amino acids in length. The function of this domain is unknown. The structure of this domain has been found to contain five helices with a long flexible loop between helices one and two. ; PDB: 2GQB_A.
Probab=24.74 E-value=1.9e+02 Score=25.08 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=34.5
Q ss_pred CCChhchHHHhCCCCCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhHHHh
Q 023141 75 EMSVENALKLLGVSETASFDEILRAKNSIVAN--CKDDQEAIAQVEAAYDMLLMRSLT 130 (286)
Q Consensus 75 ~ms~~dPYevLGVs~~AS~eEIk~Arr~L~~~--y~gD~~~~~~IeaAYD~Ilm~~L~ 130 (286)
+.+--|-.+.||++.+ -.+|++|.++ |.+|..--.+.|-+.-+-.|++|.
T Consensus 69 rtSIVDLlKlLglDSS------l~aRkeLA~eL~~~~~~~dsA~~NiwLhk~Vm~kLA 120 (127)
T PF12200_consen 69 RTSIVDLLKLLGLDSS------LAARKELAKELGYTGDYNDSASMNIWLHKQVMQKLA 120 (127)
T ss_dssp TT-HHHHHHHT----S------HHHHHHHHHHHT---SS-HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHcCCCCC------HHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 6677899999999765 3578899988 567777888899999999999993
No 102
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=23.71 E-value=74 Score=25.35 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=17.4
Q ss_pred HHHhhhhhheee------ecchhhhhHHHH--HHHHHHhh
Q 023141 218 LASSFGASLYFM------TRKNVKLGNELS--AIYSFVFN 249 (286)
Q Consensus 218 LAlslgasIYFL------nrK~~klgRA~l--~~~~~~~g 249 (286)
|++|+..+-||. +|+++++.|-++ ++.+.|+|
T Consensus 24 l~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flG 63 (77)
T PF05251_consen 24 LAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLG 63 (77)
T ss_pred HHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHh
Confidence 344444444444 357777887763 34555543
No 103
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.99 E-value=83 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q 023141 95 EILRAKNSIVANCKDDQEAIAQVEA 119 (286)
Q Consensus 95 EIk~Arr~L~~~y~gD~~~~~~Iea 119 (286)
+|++||+.|..+-..-++..++|++
T Consensus 35 ~l~~ayr~l~~~~~~~~~a~~~l~~ 59 (83)
T PF13720_consen 35 ALRRAYRILFRSGLTLEEALEELEE 59 (83)
T ss_dssp HHHHHHHHHHTSSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444455555444333444444444
No 104
>PF08552 Kei1: Inositolphosphorylceramide synthase subunit Kei1; InterPro: IPR013862 This entry indicates Golgi proteins of unknown function.
Probab=21.42 E-value=1.6e+02 Score=26.81 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHH------hhhhhheeeec-chhhhhHHHH----HHHHHHhhhe
Q 023141 183 IQAGVYGALMVLTYVNGTSTSSIAPYAGADVPGLILAS------SFGASLYFMTR-KNVKLGNELS----AIYSFVFNLF 251 (286)
Q Consensus 183 ~~~~vfg~L~~~tl~~g~~~~~~~~~a~~~~p~lqLAl------slgasIYFLnr-K~~klgRA~l----~~~~~~~gs~ 251 (286)
+.+|+||+|++++-. +.-.+|+.. ++++++|-+.+ +..+.-...+ .++=++++++
T Consensus 24 K~sG~YGlLAlfTG~--------------~ls~~Q~s~YlySi~~L~~~~~~l~~Irk~~~~~~l~la~lY~~Dtii~~~ 89 (189)
T PF08552_consen 24 KVSGLYGLLALFTGH--------------PLSFLQLSMYLYSILALVLFAWGLPHIRKQSPLQCLALAWLYLIDTIINAA 89 (189)
T ss_pred HHHHHHHHHHHHhCC--------------CCCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 567788888766632 223455442 56677777665 4444444443 3444455544
Q ss_pred eeeeecChhHHHHHHHHh
Q 023141 252 RMSFHSRSMSFLYFWYNF 269 (286)
Q Consensus 252 l~~~~~~~~~~~~~~~~~ 269 (286)
.- -.|-+.||+.
T Consensus 90 yT------~~F~~~Wf~~ 101 (189)
T PF08552_consen 90 YT------AAFAVTWFLV 101 (189)
T ss_pred HH------HHHHHHHHHh
Confidence 32 3466789988
No 105
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.22 E-value=34 Score=28.48 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=12.0
Q ss_pred hheeeecchhhhhHHHHHHHHHH
Q 023141 225 SLYFMTRKNVKLGNELSAIYSFV 247 (286)
Q Consensus 225 sIYFLnrK~~klgRA~l~~~~~~ 247 (286)
.+++.++|+++-|..-+--.+|+
T Consensus 18 ~~~~~~rRR~r~G~~P~~gt~w~ 40 (130)
T PF12273_consen 18 LFYCHNRRRRRRGLQPIYGTRWM 40 (130)
T ss_pred HHHHHHHHHhhcCCCCcCCceec
Confidence 33445666666576644434443
No 106
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=21.12 E-value=86 Score=24.63 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=31.4
Q ss_pred ChhchHHHhCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Q 023141 77 SVENALKLLGVSETASFDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMR 127 (286)
Q Consensus 77 s~~dPYevLGVs~~AS~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~ 127 (286)
=.+|||..++-=.+.+|+.+.+.-++ .+-+.+.-.+|.++-..++.+
T Consensus 40 l~~nPY~L~~~i~gi~F~~aD~iA~~----~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 40 LKENPYRLIEDIDGIGFKTADKIALK----LGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HHH-STCCCB-SSSSBHHHHHHHHHT----TT--TT-HHHHHHHHHHHHHH
T ss_pred HHHChHHHHHHccCCCHHHHHHHHHH----cCCCCCCHHHHHHHHHHHHHH
Confidence 36899999996689999988765433 344555667788888877766
No 107
>COG4877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=1.4e+02 Score=22.92 Aligned_cols=30 Identities=23% Similarity=0.478 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhcCcccccccc
Q 023141 112 EAIAQVEAAYDMLLMRSLTQRRAGKVVDSSIR 143 (286)
Q Consensus 112 ~~~~~IeaAYD~Ilm~~L~~Rq~GKIV~~~IR 143 (286)
+.+..||+-.|.++-+.|++| |+.+++.+.
T Consensus 27 de~RSiNaQIE~lL~E~lrq~--gr~~~~~~d 56 (63)
T COG4877 27 DEFRSINAQIEILLKEALRQR--GRATADAAD 56 (63)
T ss_pred HHHhhhhHHHHHHHHHHHHHh--cccchhhcc
Confidence 467889999999999999555 775554443
No 108
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=20.55 E-value=1.2e+02 Score=25.45 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=26.7
Q ss_pred hCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 023141 85 LGVSETASFDEILRAKNSIVANCKDDQEAIAQV 117 (286)
Q Consensus 85 LGVs~~AS~eEIk~Arr~L~~~y~gD~~~~~~I 117 (286)
.|-.++++.|+|..+.+..+++++-+.+.+..|
T Consensus 8 IGcr~~~~~e~i~~ai~~~L~~~~l~~~si~~l 40 (126)
T PRK07027 8 IGCRRGVPAEQIEAAIRAALAQRPLASADVRVV 40 (126)
T ss_pred eccCCCCCHHHHHHHHHHHHHHcCCCHHHhhee
Confidence 466789999999999999999998776654443
No 109
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=20.03 E-value=1.8e+02 Score=20.77 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHhhh
Q 023141 93 FDEILRAKNSIVANCKDDQEAIAQVEAAYDMLLMRSLTQR 132 (286)
Q Consensus 93 ~eEIk~Arr~L~~~y~gD~~~~~~IeaAYD~Ilm~~L~~R 132 (286)
-..|.+|+--|+++|+-|+ ++||+.|...+.+.+
T Consensus 12 r~~I~~AkgiLm~~~g~~e------~~A~~~Lr~~Am~~~ 45 (56)
T PF03861_consen 12 RRVIEQAKGILMARYGLSE------DEAYRLLRRQAMRRR 45 (56)
T ss_dssp HHHHHHHHHHHHHHHT--H------HHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHHhCcCH------HHHHHHHHHHHHHcC
Confidence 4568889999999998775 468888876666444
Done!