Query 023142
Match_columns 286
No_of_seqs 454 out of 2305
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 08:44:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14580 LRR_9: Leucine-rich r 99.9 1.1E-25 2.4E-30 182.7 4.6 171 1-171 1-171 (175)
2 KOG1644 U2-associated snRNP A' 99.9 3.8E-24 8.2E-29 172.7 13.2 231 1-236 1-233 (233)
3 KOG0444 Cytoskeletal regulator 99.8 8.7E-23 1.9E-27 188.3 -3.7 226 11-247 70-321 (1255)
4 KOG4194 Membrane glycoprotein 99.8 1.9E-21 4.1E-26 178.2 3.9 216 3-230 84-306 (873)
5 KOG4194 Membrane glycoprotein 99.8 2.3E-21 5E-26 177.6 -0.9 38 192-229 339-377 (873)
6 KOG0444 Cytoskeletal regulator 99.8 9.3E-21 2E-25 175.0 -1.6 241 12-263 96-383 (1255)
7 PLN00113 leucine-rich repeat r 99.8 4.4E-19 9.5E-24 180.5 5.5 222 12-248 86-314 (968)
8 PLN00113 leucine-rich repeat r 99.7 2.5E-19 5.3E-24 182.3 2.1 129 19-152 140-272 (968)
9 KOG0617 Ras suppressor protein 99.7 4.2E-20 9E-25 146.3 -3.2 170 34-244 26-198 (264)
10 KOG0472 Leucine-rich repeat pr 99.7 9.1E-21 2E-25 167.1 -14.4 211 12-241 84-297 (565)
11 KOG0472 Leucine-rich repeat pr 99.7 1.4E-18 3.1E-23 153.3 -3.2 139 12-157 176-314 (565)
12 KOG0617 Ras suppressor protein 99.6 1.1E-17 2.4E-22 132.6 -3.7 151 9-166 23-176 (264)
13 PRK15387 E3 ubiquitin-protein 99.6 1.1E-16 2.3E-21 156.2 0.9 184 19-238 282-465 (788)
14 PRK15387 E3 ubiquitin-protein 99.6 1.3E-15 2.8E-20 148.7 4.9 208 19-253 222-456 (788)
15 KOG0618 Serine/threonine phosp 99.6 8.5E-17 1.8E-21 154.4 -4.2 197 18-228 240-487 (1081)
16 PRK15370 E3 ubiquitin-protein 99.5 1.8E-15 3.8E-20 148.2 3.3 187 19-238 220-407 (754)
17 KOG4237 Extracellular matrix p 99.5 9.1E-17 2E-21 141.7 -6.2 110 20-130 68-181 (498)
18 KOG4237 Extracellular matrix p 99.5 5.2E-16 1.1E-20 136.9 -2.9 199 23-230 50-311 (498)
19 PRK15370 E3 ubiquitin-protein 99.5 3.7E-15 8E-20 145.9 1.1 117 21-154 180-297 (754)
20 KOG0532 Leucine-rich repeat (L 99.5 1.1E-16 2.4E-21 146.8 -10.9 196 17-254 73-269 (722)
21 PF14580 LRR_9: Leucine-rich r 99.4 5.6E-14 1.2E-18 114.3 2.7 124 25-155 3-128 (175)
22 KOG0618 Serine/threonine phosp 99.4 1E-14 2.3E-19 140.3 -3.3 185 41-240 240-450 (1081)
23 KOG1259 Nischarin, modulator o 99.4 1.6E-14 3.4E-19 123.9 -2.7 133 19-157 284-416 (490)
24 COG4886 Leucine-rich repeat (L 99.3 6.1E-14 1.3E-18 129.2 -2.6 173 19-230 116-290 (394)
25 KOG1909 Ran GTPase-activating 99.3 1.2E-13 2.5E-18 120.5 -1.4 191 14-229 87-310 (382)
26 KOG1259 Nischarin, modulator o 99.3 7.4E-13 1.6E-17 113.7 3.0 177 18-236 213-416 (490)
27 PLN03210 Resistant to P. syrin 99.3 8.3E-13 1.8E-17 136.4 3.2 87 17-104 609-698 (1153)
28 cd00116 LRR_RI Leucine-rich re 99.2 1.1E-12 2.4E-17 116.8 -1.6 36 195-230 251-291 (319)
29 KOG0532 Leucine-rich repeat (L 99.2 1.3E-12 2.9E-17 120.2 -2.3 136 12-156 114-250 (722)
30 COG4886 Leucine-rich repeat (L 99.2 4.2E-12 9.1E-17 116.9 0.4 183 4-225 123-308 (394)
31 KOG0531 Protein phosphatase 1, 99.2 1.9E-12 4.1E-17 120.1 -2.2 195 17-230 70-268 (414)
32 PLN03210 Resistant to P. syrin 99.2 9.3E-11 2E-15 121.4 9.2 209 13-238 582-822 (1153)
33 PF13855 LRR_8: Leucine rich r 99.1 3.2E-11 6.9E-16 81.0 3.5 61 64-125 1-61 (61)
34 cd00116 LRR_RI Leucine-rich re 99.1 5.8E-12 1.3E-16 112.2 -1.7 135 19-153 23-178 (319)
35 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.4E-15 78.4 3.7 59 42-100 1-61 (61)
36 KOG3207 Beta-tubulin folding c 99.0 2E-11 4.4E-16 109.4 -3.5 188 16-230 143-339 (505)
37 KOG1859 Leucine-rich repeat pr 98.9 2.7E-11 5.8E-16 114.6 -5.2 135 12-155 102-269 (1096)
38 KOG1859 Leucine-rich repeat pr 98.9 1.8E-11 3.9E-16 115.7 -7.5 129 20-154 165-293 (1096)
39 KOG0531 Protein phosphatase 1, 98.9 3E-10 6.4E-15 105.5 0.1 142 4-154 79-222 (414)
40 PLN03150 hypothetical protein; 98.8 8.8E-09 1.9E-13 100.2 7.7 104 43-151 419-526 (623)
41 PLN03150 hypothetical protein; 98.8 1.5E-08 3.4E-13 98.5 7.8 83 66-153 420-503 (623)
42 KOG2739 Leucine-rich acidic nu 98.7 8.2E-09 1.8E-13 87.4 2.9 122 34-156 35-159 (260)
43 KOG2123 Uncharacterized conser 98.7 1.2E-09 2.5E-14 93.3 -3.2 134 1-159 1-136 (388)
44 KOG4579 Leucine-rich repeat (L 98.7 1.1E-09 2.4E-14 84.2 -3.2 109 44-158 29-141 (177)
45 KOG3207 Beta-tubulin folding c 98.6 7E-09 1.5E-13 93.4 0.9 125 41-165 245-379 (505)
46 COG5238 RNA1 Ran GTPase-activa 98.5 5.2E-08 1.1E-12 83.1 3.4 141 13-153 86-255 (388)
47 PF12799 LRR_4: Leucine Rich r 98.5 9E-08 2E-12 59.6 3.2 39 20-58 2-40 (44)
48 KOG4579 Leucine-rich repeat (L 98.5 4.2E-09 9.1E-14 81.0 -4.5 108 20-130 28-140 (177)
49 KOG1909 Ran GTPase-activating 98.4 1E-07 2.2E-12 83.8 1.9 165 40-230 90-283 (382)
50 KOG4658 Apoptotic ATPase [Sign 98.4 2.4E-07 5.3E-12 92.8 3.9 105 18-124 544-653 (889)
51 KOG2982 Uncharacterized conser 98.4 9.6E-08 2.1E-12 82.5 0.8 81 86-166 222-305 (418)
52 PF12799 LRR_4: Leucine Rich r 98.4 3.4E-07 7.3E-12 57.0 2.8 39 65-104 2-40 (44)
53 KOG4658 Apoptotic ATPase [Sign 98.3 3.9E-07 8.4E-12 91.4 4.4 132 12-151 516-653 (889)
54 PF13306 LRR_5: Leucine rich r 98.3 1.7E-06 3.6E-11 66.6 6.9 120 13-142 6-128 (129)
55 COG5238 RNA1 Ran GTPase-activa 98.2 2.2E-06 4.7E-11 73.4 5.5 114 40-153 90-227 (388)
56 KOG1644 U2-associated snRNP A' 98.1 3.1E-06 6.7E-11 69.4 4.6 102 20-122 43-149 (233)
57 KOG2982 Uncharacterized conser 98.0 3.4E-07 7.4E-12 79.1 -2.5 198 23-230 49-262 (418)
58 PRK15386 type III secretion pr 97.9 5.1E-05 1.1E-09 69.5 8.4 115 17-150 50-187 (426)
59 KOG3665 ZYG-1-like serine/thre 97.9 7E-06 1.5E-10 80.5 3.0 135 19-155 122-265 (699)
60 PF13306 LRR_5: Leucine rich r 97.8 3.5E-05 7.6E-10 59.1 5.7 106 36-150 6-113 (129)
61 KOG3665 ZYG-1-like serine/thre 97.7 2.3E-05 5.1E-10 76.9 3.2 109 17-126 146-263 (699)
62 PRK15386 type III secretion pr 97.6 0.00014 3.1E-09 66.6 6.3 73 40-125 50-124 (426)
63 KOG2739 Leucine-rich acidic nu 97.4 5.4E-05 1.2E-09 64.4 1.2 103 19-122 43-152 (260)
64 KOG2120 SCF ubiquitin ligase, 97.4 5.5E-06 1.2E-10 71.8 -5.5 133 19-152 185-325 (419)
65 KOG2120 SCF ubiquitin ligase, 97.3 9.6E-06 2.1E-10 70.4 -5.1 133 15-151 206-349 (419)
66 KOG2123 Uncharacterized conser 97.2 1.7E-05 3.6E-10 68.3 -4.1 83 63-152 18-100 (388)
67 PF00560 LRR_1: Leucine Rich R 96.1 0.0031 6.8E-08 32.7 1.3 20 20-39 1-20 (22)
68 PF00560 LRR_1: Leucine Rich R 95.9 0.0041 8.8E-08 32.3 1.1 17 66-82 2-18 (22)
69 PF13504 LRR_7: Leucine rich r 95.5 0.0095 2.1E-07 28.8 1.5 16 20-35 2-17 (17)
70 KOG0473 Leucine-rich repeat pr 95.4 0.00021 4.6E-09 60.1 -7.7 82 41-125 41-123 (326)
71 KOG3763 mRNA export factor TAP 95.3 0.013 2.8E-07 55.1 2.7 89 62-151 216-312 (585)
72 smart00369 LRR_TYP Leucine-ric 95.2 0.013 2.9E-07 31.5 1.7 21 64-84 2-22 (26)
73 smart00370 LRR Leucine-rich re 95.2 0.013 2.9E-07 31.5 1.7 21 64-84 2-22 (26)
74 KOG0473 Leucine-rich repeat pr 95.2 0.00031 6.8E-09 59.1 -7.2 94 53-153 29-124 (326)
75 PF13504 LRR_7: Leucine rich r 94.7 0.022 4.7E-07 27.5 1.4 6 69-74 6-11 (17)
76 KOG4308 LRR-containing protein 93.4 0.004 8.7E-08 58.8 -4.9 182 21-229 89-302 (478)
77 smart00370 LRR Leucine-rich re 93.0 0.066 1.4E-06 28.7 1.5 18 113-130 2-19 (26)
78 smart00369 LRR_TYP Leucine-ric 93.0 0.066 1.4E-06 28.7 1.5 18 113-130 2-19 (26)
79 KOG1947 Leucine rich repeat pr 91.3 0.027 5.9E-07 52.7 -2.3 109 18-126 187-308 (482)
80 smart00365 LRR_SD22 Leucine-ri 90.4 0.27 5.8E-06 26.6 2.1 17 42-58 2-18 (26)
81 smart00365 LRR_SD22 Leucine-ri 88.2 0.39 8.4E-06 26.0 1.6 19 18-36 1-19 (26)
82 smart00364 LRR_BAC Leucine-ric 85.7 0.49 1.1E-05 25.5 1.2 17 20-36 3-19 (26)
83 KOG1947 Leucine rich repeat pr 84.9 0.3 6.4E-06 45.7 0.2 110 40-152 186-307 (482)
84 KOG3864 Uncharacterized conser 84.2 0.27 5.9E-06 40.8 -0.4 85 64-151 101-187 (221)
85 KOG3763 mRNA export factor TAP 83.3 0.39 8.4E-06 45.6 0.2 64 39-102 215-284 (585)
86 KOG4341 F-box protein containi 83.2 0.57 1.2E-05 43.1 1.2 136 17-155 292-441 (483)
87 KOG4341 F-box protein containi 83.1 1.1 2.4E-05 41.2 3.0 134 20-153 269-414 (483)
88 PF13516 LRR_6: Leucine Rich r 80.7 0.8 1.7E-05 23.8 0.8 14 64-77 2-15 (24)
89 KOG3864 Uncharacterized conser 79.1 0.21 4.5E-06 41.5 -2.8 97 27-124 86-187 (221)
90 smart00368 LRR_RI Leucine rich 70.2 3.9 8.5E-05 22.2 1.8 13 43-55 3-15 (28)
91 TIGR00864 PCC polycystin catio 63.2 5 0.00011 45.4 2.4 31 71-101 2-32 (2740)
92 smart00446 LRRcap occurring C- 56.4 9.3 0.0002 20.6 1.6 20 130-149 3-22 (26)
93 TIGR00864 PCC polycystin catio 54.8 7.2 0.00016 44.2 1.8 36 94-130 1-36 (2740)
94 smart00367 LRR_CC Leucine-rich 32.8 28 0.00062 18.2 1.2 11 113-123 2-12 (26)
95 KOG4308 LRR-containing protein 29.5 31 0.00068 32.8 1.6 37 90-126 89-128 (478)
No 1
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.92 E-value=1.1e-25 Score=182.74 Aligned_cols=171 Identities=50% Similarity=0.761 Sum_probs=75.6
Q ss_pred CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (286)
Q Consensus 1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~ 80 (286)
|++||.+.|++.+.+.++.++++|+|++|.|+.+......+.+|+.|+|++|.|+.++++..++.|+.|++++|+|+++.
T Consensus 1 ~~~lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 1 MVRLTANMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C
T ss_pred CccccccccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc
Confidence 89999999999999999999999999999999998765568999999999999999999999999999999999999997
Q ss_pred CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS 160 (286)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 160 (286)
+.....+++|+.|++++|+|..+..+..+..+++|+.|++.+|+++..+.|+.+.+..+|+|+.||.....-.++..+..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~ 160 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEERQEAEK 160 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B------
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHhccccc
Confidence 65545789999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhHHHH
Q 023142 161 LFASEEMEEEA 171 (286)
Q Consensus 161 ~~~~~~~~~~~ 171 (286)
+|.+.....+.
T Consensus 161 ~f~~~~~~~~~ 171 (175)
T PF14580_consen 161 LFKGKRAAQLA 171 (175)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 99887755444
No 2
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=99.92 E-value=3.8e-24 Score=172.74 Aligned_cols=231 Identities=54% Similarity=0.839 Sum_probs=200.6
Q ss_pred CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (286)
Q Consensus 1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~ 80 (286)
|+++|++.+.+.+.|.+...=+.++|.+.++..+............+||++|.+..++.|..++.|.+|.|++|+|+.|.
T Consensus 1 m~klt~el~~q~pqy~~~~~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~ 80 (233)
T KOG1644|consen 1 MVKLTAELIVQAPQYINSVRERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID 80 (233)
T ss_pred CccccHHHHhhchhhhhhccccccccccccccchhhccccccccceecccccchhhcccCCCccccceEEecCCcceeec
Confidence 89999999999999999999999999999998887655567788999999999999999999999999999999999999
Q ss_pred CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS 160 (286)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 160 (286)
+.....+++|..|.|.+|.|..+.++..+..||+|++|.+-+|+++....||.+.++.+|+|++||+++....++..+..
T Consensus 81 p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~ 160 (233)
T KOG1644|consen 81 PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEV 160 (233)
T ss_pred cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHH
Confidence 98877889999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchhHHHHHhhh-cccCCCCCCC-CCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142 161 LFASEEMEEEAKKES-MKTLMPVEVP-NVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 236 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~ 236 (286)
+|.+..+....+.+. ...+.++... ..|. .+.. ..-+..+...|..+|.++++|.|+...+-.+++|.||.
T Consensus 161 ~f~~k~~k~~~~~i~~s~~~~~~~~~~~~p~----~~~~-~~~t~e~~~~iK~ai~~a~sl~Ei~RL~~~l~~G~~p~ 233 (233)
T KOG1644|consen 161 FFKGKKGKKAAKSINRSKASDPGSHYAELPN----ANSV-VTPTPEDREKIKEAIKNASSLAEINRLEQLLQSGQIPK 233 (233)
T ss_pred HhccccchhhhhhhhhhhccCchhccccCCc----ccCC-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence 997777766666554 4445444221 0000 1111 22278899999999999999999999999999999994
No 3
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=8.7e-23 Score=188.27 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=156.8
Q ss_pred CCCCcCCCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142 11 KSPHFFNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFL 87 (286)
Q Consensus 11 ~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 87 (286)
--..++.++.|+.+.+..|++. .||..+..+..|++||||+|+++.+| .+...+++..|+||+|+|..||...|-++
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinL 149 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINL 149 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhh
Confidence 3455666677777777777765 56766666777777777777777776 67777777777777777777777777777
Q ss_pred CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-----CCCCch-----------------HHHHhhCCCCcEE
Q 023142 88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-----KKPNYR-----------------LYVIHKLKSLRVL 145 (286)
Q Consensus 88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-----~ip~~~-----------------~~~l~~l~~L~~L 145 (286)
+-|-.|+||+|++..+|+ ....+..|++|.|++|++. ++|... ...+..+.+|+.+
T Consensus 150 tDLLfLDLS~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPP--QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred HhHhhhccccchhhhcCH--HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 777777777777777776 5666666777777776543 222210 0035566677777
Q ss_pred eCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCC-hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 023142 146 DFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVS-EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR 224 (286)
Q Consensus 146 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l 224 (286)
|++.|.+..++.+......+...++ +...+..+. .++...++..|+++.|+++.+|.++.++++|..|.+
T Consensus 228 DlS~N~Lp~vPecly~l~~LrrLNL---------S~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~ 298 (1255)
T KOG0444|consen 228 DLSENNLPIVPECLYKLRNLRRLNL---------SGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYA 298 (1255)
T ss_pred cccccCCCcchHHHhhhhhhheecc---------CcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHh
Confidence 7777777666665544443332221 111111111 124567899999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCccCCCCCCC
Q 023142 225 LEKVLKSGQLPADLKIPDYDSGS 247 (286)
Q Consensus 225 ~~N~l~~g~iP~~~~~~~~~~~~ 247 (286)
.+|+|.-..||++|++..-....
T Consensus 299 n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 299 NNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred ccCcccccCCccchhhhhhhHHH
Confidence 99999888899999988765543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-21 Score=178.17 Aligned_cols=216 Identities=19% Similarity=0.245 Sum_probs=163.4
Q ss_pred ccCHHHHhC--CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142 3 RLTADLIWK--SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (286)
Q Consensus 3 ~Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~ 78 (286)
.++.+.+.+ +..|.++++|+.+++.+|.++.||.......+|+.|+|.+|.|+.+. .+..++.|+.|+|+.|.|+.
T Consensus 84 dlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~ 163 (873)
T KOG4194|consen 84 DLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISE 163 (873)
T ss_pred eccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhc
Confidence 355566654 55678999999999999999999987777778999999999999885 68899999999999999999
Q ss_pred cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEA 158 (286)
Q Consensus 79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 158 (286)
++...|..-.++++|+|++|.|+.+.. +.|.++.+|..|.|+.|+++.+|.. .|.++++|+.|++..|.+..++..
T Consensus 164 i~~~sfp~~~ni~~L~La~N~It~l~~-~~F~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~LdLnrN~irive~l 239 (873)
T KOG4194|consen 164 IPKPSFPAKVNIKKLNLASNRITTLET-GHFDSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESLDLNRNRIRIVEGL 239 (873)
T ss_pred ccCCCCCCCCCceEEeecccccccccc-ccccccchheeeecccCcccccCHH---Hhhhcchhhhhhccccceeeehhh
Confidence 998888777899999999999999987 8999999999999999999999986 788899999999999998765432
Q ss_pred HHHhhcchhHHHHHhh--hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHh
Q 023142 159 ASLFASEEMEEEAKKE--SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 159 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~ 230 (286)
.|.++.+...++-- ....+..+.+- .+.+++.++|..|++..+. ..+.++++|+.|++++|.++
T Consensus 240 --tFqgL~Sl~nlklqrN~I~kL~DG~Fy------~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 240 --TFQGLPSLQNLKLQRNDISKLDDGAFY------GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred --hhcCchhhhhhhhhhcCcccccCccee------eecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 36666654433211 11122222221 2445555555555555444 34455555555555555554
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.3e-21 Score=177.61 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=20.8
Q ss_pred hccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 023142 192 EQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVL 229 (286)
Q Consensus 192 ~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l 229 (286)
.+..|+.|.|++|.+..|. .+|..+.+|++|++.+|.+
T Consensus 339 ~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 339 VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence 3445555555555555555 3444455555555555555
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=9.3e-21 Score=174.99 Aligned_cols=241 Identities=21% Similarity=0.188 Sum_probs=181.4
Q ss_pred CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
|+.++.+..|+.||||+|+++.+|..+.+-+++-+|+||+|+|..|| -|.+++-|-.|+||+|++..+||.+ ..+..
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~ 174 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSM 174 (1255)
T ss_pred CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH-HHHhh
Confidence 77788899999999999999999988877888999999999999998 4788899999999999999998876 57777
Q ss_pred ccEEEeecCcCC-----CCCCC-------------------ccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEE
Q 023142 90 LHTLVLTNNRLV-----NLVEI-------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL 145 (286)
Q Consensus 90 L~~L~Ls~N~i~-----~~~~~-------------------~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L 145 (286)
|++|.|++|.+. .+|.+ .++..+.+|+.+|++.|.+..+|. .+..+++|+.|
T Consensus 175 LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe----cly~l~~LrrL 250 (1255)
T KOG0444|consen 175 LQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE----CLYKLRNLRRL 250 (1255)
T ss_pred hhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH----HHhhhhhhhee
Confidence 888888887542 23321 144556778888999999888888 78888889999
Q ss_pred eCCCCChHHHHHHHHHhhcchhHHH-----------------HHhh----hcccCCCCCCCCCChhhhccCCccCCCCHH
Q 023142 146 DFKKVKNKERMEAASLFASEEMEEE-----------------AKKE----SMKTLMPVEVPNVSEEEEQQTPKVVAPTPE 204 (286)
Q Consensus 146 ~l~~n~~~~~~~~~~~~~~~~~~~~-----------------~~~~----~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n 204 (286)
++++|.+++.......+......++ +..+ ...+|. +.+ +++|++.+|+++..++|
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe-GiP---SGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE-GIP---SGIGKLIQLEVFHAANN 326 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc-CCc---cchhhhhhhHHHHhhcc
Confidence 9999988776555544433332111 1111 112221 111 25589999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCccccccccccccCCCC
Q 023142 205 QIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVPDVEN 263 (286)
Q Consensus 205 ~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (286)
.+.-+|+.++.|..|+.|.+++|.| -.+|..|........+|.-.+..--|.++-.+
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrL--iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRL--ITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccce--eechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 9999999999999999999999999 57999988877766665543434455555443
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=4.4e-19 Score=180.49 Aligned_cols=222 Identities=19% Similarity=0.187 Sum_probs=147.1
Q ss_pred CCCcCCCCCccEEEeeCCCCc-ccccc-ccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 12 SPHFFNAIKERELDLRGNKIA-VIENL-GATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
++.|..+++|+.|++++|+++ .+|.. +..+++|++|+|++|.++.....+.+++|++|+|++|.+++..+..+..+++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 445777888888888888887 67744 3368888888888888774322355778888888888887655555677888
Q ss_pred ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCChHH-HHHHHHHhhcchh
Q 023142 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKNKE-RMEAASLFASEEM 167 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~ 167 (286)
|++|++++|.+.+..+ ..++++++|++|++++|.+. .+|. .++.+++|++|++++|.+.. ++.. |.....
T Consensus 166 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~ 237 (968)
T PLN00113 166 LKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIPR----ELGQMKSLKWIYLGYNNLSGEIPYE---IGGLTS 237 (968)
T ss_pred CCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCCh----HHcCcCCccEEECcCCccCCcCChh---HhcCCC
Confidence 8888888888775444 46778888888888888876 3455 67888888888888887642 1111 111111
Q ss_pred HHHHHhhhcccCCCCCCC-CCC-hhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCC
Q 023142 168 EEEAKKESMKTLMPVEVP-NVS-EEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYD 244 (286)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~ 244 (286)
+....+....+. .+| ..+.+.+|+.++++.|++. .+|..+.++++|++|++++|.+. |.+|..+......
T Consensus 238 ------L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L 310 (968)
T PLN00113 238 ------LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNL 310 (968)
T ss_pred ------CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCC
Confidence 110111100000 111 1245777888888888887 67788888888888888888884 6777766555444
Q ss_pred CCCc
Q 023142 245 SGSK 248 (286)
Q Consensus 245 ~~~~ 248 (286)
..++
T Consensus 311 ~~L~ 314 (968)
T PLN00113 311 EILH 314 (968)
T ss_pred cEEE
Confidence 4443
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=2.5e-19 Score=182.33 Aligned_cols=129 Identities=25% Similarity=0.293 Sum_probs=54.9
Q ss_pred CCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|++|++++|.++ .+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 33333333333333 23333444444444444444443 223 3444444444444444444333333334444444444
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
++|.+++..+ ..++++++|++|++++|.++ .+|. .++.+++|++|++++|.+
T Consensus 220 ~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 220 GYNNLSGEIP-YEIGGLTSLNHLDLVYNNLTGPIPS----SLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred cCCccCCcCC-hhHhcCCCCCEEECcCceeccccCh----hHhCCCCCCEEECcCCee
Confidence 4444443222 23444444444444444443 2232 344444444444444443
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=4.2e-20 Score=146.30 Aligned_cols=170 Identities=24% Similarity=0.323 Sum_probs=105.0
Q ss_pred ccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCC
Q 023142 34 IENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSL 112 (286)
Q Consensus 34 l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l 112 (286)
+|..|. +...+.|.||+|+++.+| .+..+.+|+.|++.+|+|+.+|..+ +.+++|+.|+++-|++..+|. .|+.+
T Consensus 26 ~~gLf~-~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lpr--gfgs~ 101 (264)
T KOG0617|consen 26 LPGLFN-MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPR--GFGSF 101 (264)
T ss_pred cccccc-hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCcc--ccCCC
Confidence 344333 555666666666666553 5666666666666666666666554 466666666666666666654 66666
Q ss_pred CCccEEEecCCcCC--CCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh
Q 023142 113 PKLQFLSLLDNSIT--KKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE 190 (286)
Q Consensus 113 ~~L~~L~L~~N~l~--~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (286)
+.|+.|||.+|++. .+|. .|..+..|+.|.++.|.+.-+ | +++
T Consensus 102 p~levldltynnl~e~~lpg----nff~m~tlralyl~dndfe~l-------------------------p------~dv 146 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPG----NFFYMTTLRALYLGDNDFEIL-------------------------P------PDV 146 (264)
T ss_pred chhhhhhccccccccccCCc----chhHHHHHHHHHhcCCCcccC-------------------------C------hhh
Confidence 66666666666665 4555 455566666666666653311 1 123
Q ss_pred hhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCC
Q 023142 191 EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYD 244 (286)
Q Consensus 191 ~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~ 244 (286)
+++++|+.+.+.+|.+-.+|..++.++.|++|.+.+|.+ ..+|+.+......
T Consensus 147 g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl--~vlppel~~l~l~ 198 (264)
T KOG0617|consen 147 GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL--TVLPPELANLDLV 198 (264)
T ss_pred hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee--eecChhhhhhhhh
Confidence 456666666666677777777777777777777777777 4577766655443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.70 E-value=9.1e-21 Score=167.08 Aligned_cols=211 Identities=20% Similarity=0.241 Sum_probs=123.3
Q ss_pred CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 90 (286)
|++++.+..++.+++++|++..+|..+..+.++..|+.++|.+..++ +++.+..|..++..+|+++.+|++++ .+.+|
T Consensus 84 p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~-~~~~l 162 (565)
T KOG0472|consen 84 PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMV-NLSKL 162 (565)
T ss_pred CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHH-HHHHH
Confidence 44444444444444444444444444444444555555555555443 44555555555555555555554443 44555
Q ss_pred cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHH
Q 023142 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEE 170 (286)
Q Consensus 91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 170 (286)
..+++.+|+++.+|+ ..+ +++.|++|+...|-+..+|. .++.+.+|..|++..|++...+ -|.++.....
T Consensus 163 ~~l~~~~n~l~~l~~-~~i-~m~~L~~ld~~~N~L~tlP~----~lg~l~~L~~LyL~~Nki~~lP----ef~gcs~L~E 232 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPE-NHI-AMKRLKHLDCNSNLLETLPP----ELGGLESLELLYLRRNKIRFLP----EFPGCSLLKE 232 (565)
T ss_pred HHhhccccchhhCCH-HHH-HHHHHHhcccchhhhhcCCh----hhcchhhhHHHHhhhcccccCC----CCCccHHHHH
Confidence 555555555555554 222 35566666666666666666 5666666777777777665544 2555443222
Q ss_pred HHhh-hcccCCCCCCCCCChh-hhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142 171 AKKE-SMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIP 241 (286)
Q Consensus 171 ~~~~-~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~ 241 (286)
+... ......|. +. ..+.++.++++.+|+++.+|..+..+.+|++||+++|.+ .++|.+++..
T Consensus 233 lh~g~N~i~~lpa------e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl 297 (565)
T KOG0472|consen 233 LHVGENQIEMLPA------EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL 297 (565)
T ss_pred HHhcccHHHhhHH------HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc--ccCCcccccc
Confidence 1100 00111111 11 256788999999999999999999999999999999999 4699988876
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=1.4e-18 Score=153.33 Aligned_cols=139 Identities=20% Similarity=0.255 Sum_probs=122.5
Q ss_pred CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 91 (286)
|+...++..|++|+...|.++.+|+.++.+.+|..|+|..|+|..+|.|++|..|..|+++.|+|+-+|.....+++++.
T Consensus 176 ~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 176 PENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLL 255 (565)
T ss_pred CHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccce
Confidence 44455566777888888888888888888899999999999999999999999999999999999999888888999999
Q ss_pred EEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME 157 (286)
Q Consensus 92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 157 (286)
.|||+.|+++.+|+ .+.-+++|.+||+++|.|+.+|. .++++ +|+.|-+.+|++..+..
T Consensus 256 vLDLRdNklke~Pd--e~clLrsL~rLDlSNN~is~Lp~----sLgnl-hL~~L~leGNPlrTiRr 314 (565)
T KOG0472|consen 256 VLDLRDNKLKEVPD--EICLLRSLERLDLSNNDISSLPY----SLGNL-HLKFLALEGNPLRTIRR 314 (565)
T ss_pred eeeccccccccCch--HHHHhhhhhhhcccCCccccCCc----ccccc-eeeehhhcCCchHHHHH
Confidence 99999999999987 78888999999999999999988 78999 99999999999987754
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.1e-17 Score=132.61 Aligned_cols=151 Identities=25% Similarity=0.301 Sum_probs=128.6
Q ss_pred HhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142 9 IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFL 87 (286)
Q Consensus 9 i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 87 (286)
..+.+.+.++.+.+.|.||+|+++.+|+.++.+.+|++|++++|+|..+| .++.++.|+.|+++-|++..+|.++ +.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf-gs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF-GSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc-CCC
Confidence 34566778888899999999999999988888999999999999999997 8999999999999999999887765 689
Q ss_pred CCccEEEeecCcCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcc
Q 023142 88 PKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASE 165 (286)
Q Consensus 88 ~~L~~L~Ls~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 165 (286)
|.|+.|||.+|++.. +| +.|-.+..|+.|+|++|.+.-+|. .++.+++|+.|.++.|.+-+.+.....+..+
T Consensus 102 p~levldltynnl~e~~lp--gnff~m~tlralyl~dndfe~lp~----dvg~lt~lqil~lrdndll~lpkeig~lt~l 175 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLP--GNFFYMTTLRALYLGDNDFEILPP----DVGKLTNLQILSLRDNDLLSLPKEIGDLTRL 175 (264)
T ss_pred chhhhhhccccccccccCC--cchhHHHHHHHHHhcCCCcccCCh----hhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence 999999999999875 44 467788889999999999999988 6899999999999999987766555444443
Q ss_pred h
Q 023142 166 E 166 (286)
Q Consensus 166 ~ 166 (286)
.
T Consensus 176 r 176 (264)
T KOG0617|consen 176 R 176 (264)
T ss_pred H
Confidence 3
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=1.1e-16 Score=156.22 Aligned_cols=184 Identities=16% Similarity=0.151 Sum_probs=120.0
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 98 (286)
.+|+.|++++|+|+.+|.. +++|+.|++++|+|+.+|.+. ..|+.|++++|+|+.+|.. ..+|+.|+|++|
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp--~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N 352 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPALP--SELCKLWAYNNQLTSLPTL----PSGLQELSVSDN 352 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCCc--ccccccccccCcccccccc----ccccceEecCCC
Confidence 3455666666666666642 467888888888888876532 3567777778877777531 246788888888
Q ss_pred cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhccc
Q 023142 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKT 178 (286)
Q Consensus 99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (286)
+|+.+|. . .++|+.|++++|.++.+|.. ..+|+.|++++|.+..++.. ...+. ...
T Consensus 353 ~Ls~LP~--l---p~~L~~L~Ls~N~L~~LP~l-------~~~L~~LdLs~N~Lt~LP~l---~s~L~---------~Ld 408 (788)
T PRK15387 353 QLASLPT--L---PSELYKLWAYNNRLTSLPAL-------PSGLKELIVSGNRLTSLPVL---PSELK---------ELM 408 (788)
T ss_pred ccCCCCC--C---CcccceehhhccccccCccc-------ccccceEEecCCcccCCCCc---ccCCC---------EEE
Confidence 8888775 1 24567777777777777651 24677777777776644321 11111 011
Q ss_pred CCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142 179 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL 238 (286)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~ 238 (286)
+....+..+|. ...+|..+++++|+|+.||..+.+++.|+.|++++|.|+ |.+|..+
T Consensus 409 LS~N~LssIP~--l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls-~~~~~~L 465 (788)
T PRK15387 409 VSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS-ERTLQAL 465 (788)
T ss_pred ccCCcCCCCCc--chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC-chHHHHH
Confidence 11111111111 123578899999999999999999999999999999995 6666544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.57 E-value=1.3e-15 Score=148.72 Aligned_cols=208 Identities=15% Similarity=0.118 Sum_probs=104.3
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc--------------
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG-------------- 84 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~-------------- 84 (286)
++|+.|++++|+|+.+|.. +++|++|++++|+|+.+|.+ .++|+.|++++|.++.+|....
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~ 296 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 296 (788)
T ss_pred cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCcccc
Confidence 3567777777777776643 45677777777777666532 2344444444444444332000
Q ss_pred --cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHh
Q 023142 85 --EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF 162 (286)
Q Consensus 85 --~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 162 (286)
..+++|+.|++++|+|+.+|.+ . ..|+.|++++|.++.+|.. ..+|+.|++++|++..++.. .
T Consensus 297 LP~~p~~L~~LdLS~N~L~~Lp~l--p---~~L~~L~Ls~N~L~~LP~l-------p~~Lq~LdLS~N~Ls~LP~l---p 361 (788)
T PRK15387 297 LPVLPPGLQELSVSDNQLASLPAL--P---SELCKLWAYNNQLTSLPTL-------PSGLQELSVSDNQLASLPTL---P 361 (788)
T ss_pred ccccccccceeECCCCccccCCCC--c---ccccccccccCcccccccc-------ccccceEecCCCccCCCCCC---C
Confidence 0124556666666666555431 1 1233333333333333320 12456666666655543311 0
Q ss_pred hcchhHHHH-----------HhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 023142 163 ASEEMEEEA-----------KKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKS 231 (286)
Q Consensus 163 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~ 231 (286)
......... ..+....+....+..+|. ...+|+.+++++|+|+.||... .+|+.|++++|+++
T Consensus 362 ~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~--l~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt- 435 (788)
T PRK15387 362 SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLT- 435 (788)
T ss_pred cccceehhhccccccCcccccccceEEecCCcccCCCC--cccCCCEEEccCCcCCCCCcch---hhhhhhhhccCccc-
Confidence 000000000 000000111111111111 1346888889999988888543 46889999999994
Q ss_pred CCCCCCCccCCCCCCCcccccc
Q 023142 232 GQLPADLKIPDYDSGSKDVKEN 253 (286)
Q Consensus 232 g~iP~~~~~~~~~~~~~~~~~~ 253 (286)
.||..+........++.-.+.
T Consensus 436 -~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 436 -RLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -ccChHHhhccCCCeEECCCCC
Confidence 699888776655555544443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=8.5e-17 Score=154.40 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=105.8
Q ss_pred CCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEee
Q 023142 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 96 (286)
..+|+++++++|+++.+|.+++.+.+|+.+...+|.++.+| .+...++|+.|.+.+|.++.+|+.. .++..|++|+|.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~l-e~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFL-EGLKSLRTLDLQ 318 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcc-cccceeeeeeeh
Confidence 45677777777777777777777777777777777776655 3444455555555555555554432 234455555555
Q ss_pred cCcCCCCCC------------------------------------------------CccCCCCCCccEEEecCCcCCCC
Q 023142 97 NNRLVNLVE------------------------------------------------IDPLTSLPKLQFLSLLDNSITKK 128 (286)
Q Consensus 97 ~N~i~~~~~------------------------------------------------~~~l~~l~~L~~L~L~~N~l~~i 128 (286)
.|.|..+|+ +..+.+++.|+.|+|++|++..+
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 555544443 12344556666666666666666
Q ss_pred CCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-
Q 023142 129 PNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII- 207 (286)
Q Consensus 129 p~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~- 207 (286)
|+. .+.++..|+.|++++|+++.++........+...-. ....+...|+...+..++.++++.|+++
T Consensus 399 pas---~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a---------hsN~l~~fPe~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 399 PAS---KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA---------HSNQLLSFPELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred CHH---HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh---------cCCceeechhhhhcCcceEEecccchhhh
Confidence 654 455666666666666666655544433333221110 0111111122234555666666666666
Q ss_pred -HHHHHHHhcCCHHHHHHHHHH
Q 023142 208 -AIKAAIVNSQTLEEVARLEKV 228 (286)
Q Consensus 208 -~ip~~i~~~~~L~~l~l~~N~ 228 (286)
.+|.+.. .+.|++|++++|.
T Consensus 467 ~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhCC-CcccceeeccCCc
Confidence 3333222 2566666666555
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=1.8e-15 Score=148.18 Aligned_cols=187 Identities=18% Similarity=0.232 Sum_probs=120.3
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
.+|+.|++++|+|+.+|..+ ..+|+.|+|++|.+..+| .+. .+|+.|++++|+|+.+|..++ ++|+.|++++
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~ 292 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP---EELRYLSVYD 292 (754)
T ss_pred cCCCEEECCCCccccCChhh--hccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC---CCCcEEECCC
Confidence 58999999999999888654 357889999999988887 333 478888999888888876442 4788888888
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK 177 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (286)
|+|+.+|. .+. ++|+.|++++|.++.+|.. + .++|+.|++++|.+..++... ...+.. .
T Consensus 293 N~Lt~LP~--~lp--~sL~~L~Ls~N~Lt~LP~~----l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~---------L 351 (754)
T PRK15370 293 NSIRTLPA--HLP--SGITHLNVQSNSLTALPET----L--PPGLKTLEAGENALTSLPASL--PPELQV---------L 351 (754)
T ss_pred CccccCcc--cch--hhHHHHHhcCCccccCCcc----c--cccceeccccCCccccCChhh--cCcccE---------E
Confidence 88888765 221 3567777777777766652 1 246666777776665443211 111110 0
Q ss_pred cCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142 178 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADL 238 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~ 238 (286)
.+....+..+|.. -..+|+.|++++|+|+.+|..+.. +|+.|++++|.+. .+|..+
T Consensus 352 ~Ls~N~L~~LP~~-lp~~L~~LdLs~N~Lt~LP~~l~~--sL~~LdLs~N~L~--~LP~sl 407 (754)
T PRK15370 352 DVSKNQITVLPET-LPPTITTLDVSRNALTNLPENLPA--ALQIMQASRNNLV--RLPESL 407 (754)
T ss_pred ECCCCCCCcCChh-hcCCcCEEECCCCcCCCCCHhHHH--HHHHHhhccCCcc--cCchhH
Confidence 0000011111111 123677888888888888876653 5888888888883 566544
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=9.1e-17 Score=141.67 Aligned_cols=110 Identities=30% Similarity=0.378 Sum_probs=62.9
Q ss_pred CccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccC-CcCcccCCccccCCCCccEEEe
Q 023142 20 KERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L 95 (286)
.-..++|..|+|+.|| ..|..+++|+.||||+|.|+.| | .|.++++|..|-+.+ |+|++++.+.|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 3455666666666666 4556666666666666666666 2 566666665555544 6666666666665555555555
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
.-|++..+.. +.|..+++|..|.+.+|.+..++.
T Consensus 148 Nan~i~Cir~-~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 148 NANHINCIRQ-DALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred ChhhhcchhH-HHHHHhhhcchhcccchhhhhhcc
Confidence 5555555443 445555555555555554444433
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=5.2e-16 Score=136.91 Aligned_cols=199 Identities=21% Similarity=0.215 Sum_probs=149.6
Q ss_pred EEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec-Cc
Q 023142 23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN-NR 99 (286)
Q Consensus 23 ~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~ 99 (286)
..+.++-.++++|..+ .+....++|..|+|+.|| .|+.+++|+.|+|++|+|+.|.++.|.++..|..|-+.+ |+
T Consensus 50 ~VdCr~~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 4567777888888655 356788999999999997 799999999999999999999999999999887776666 89
Q ss_pred CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHH--------------------
Q 023142 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAA-------------------- 159 (286)
Q Consensus 100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-------------------- 159 (286)
|+.+|. +.|+++..|+.|.+.-|++..++.. .+..+++|..|.+..|.+..+....
T Consensus 128 I~~l~k-~~F~gL~slqrLllNan~i~Cir~~---al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 128 ITDLPK-GAFGGLSSLQRLLLNANHINCIRQD---ALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred hhhhhh-hHhhhHHHHHHHhcChhhhcchhHH---HHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 999998 8999999999999999999987765 7888888888888888766553310
Q ss_pred --------------HHhhcch---hHH-------------HH-------HhhhcccCCCCCCCCCChh--hhccCCccCC
Q 023142 160 --------------SLFASEE---MEE-------------EA-------KKESMKTLMPVEVPNVSEE--EEQQTPKVVA 200 (286)
Q Consensus 160 --------------~~~~~~~---~~~-------------~~-------~~~~~~~~~~~~~~~~~~~--~~~~~l~~l~ 200 (286)
..|++.. +.. +. ......++... +. |.. ..+.+|+.++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~-~c--P~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDS-IC--PAKCFKKLPNLRKLN 280 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCC-cC--hHHHHhhcccceEec
Confidence 0011100 100 00 00111111111 11 222 5788999999
Q ss_pred CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHh
Q 023142 201 PTPEQIIAIK-AAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 201 ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~ 230 (286)
+++|+|+.|- .+|..+..+++|.+..|++.
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 9999999776 78899999999999999985
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=3.7e-15 Score=145.93 Aligned_cols=117 Identities=28% Similarity=0.377 Sum_probs=55.3
Q ss_pred ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142 21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (286)
Q Consensus 21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 99 (286)
...|++++++++.+|..+ .+.|+.|+|++|.|+.+| .+. ++|++|++++|+++.+|.... .+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP---DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh---ccccEEECcCCc
Confidence 345555555555555433 234555555555555554 221 345555555555555543221 245555555555
Q ss_pred CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
|..+|. .+. .+|+.|++++|+++.+|.. + .++|+.|++++|.+..
T Consensus 253 L~~LP~--~l~--s~L~~L~Ls~N~L~~LP~~----l--~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 253 ITELPE--RLP--SALQSLDLFHNKISCLPEN----L--PEELRYLSVYDNSIRT 297 (754)
T ss_pred cCcCCh--hHh--CCCCEEECcCCccCccccc----c--CCCCcEEECCCCcccc
Confidence 555443 221 2455555555555555441 1 1345555555555443
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.48 E-value=1.1e-16 Score=146.79 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=157.2
Q ss_pred CCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
.+..-...+++.|++..+|..++.+..|+.+.|..|.|..+| .+.++..|.+|+|+.|+++.+|..++ .|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC-DLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh-cCc-ceeEEE
Confidence 344555678888988888877777888888888899888886 78888889999999999998888774 444 888889
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKES 175 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (286)
++|+++.+|+ .++.++.|..|+.+.|.+..+|. .++.+.+|+.|.++.|.+..++...
T Consensus 151 sNNkl~~lp~--~ig~~~tl~~ld~s~nei~slps----ql~~l~slr~l~vrRn~l~~lp~El---------------- 208 (722)
T KOG0532|consen 151 SNNKLTSLPE--EIGLLPTLAHLDVSKNEIQSLPS----QLGYLTSLRDLNVRRNHLEDLPEEL---------------- 208 (722)
T ss_pred ecCccccCCc--ccccchhHHHhhhhhhhhhhchH----HhhhHHHHHHHHHhhhhhhhCCHHH----------------
Confidence 9999998887 67788888999999999988888 7888888888888888765442111
Q ss_pred cccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCccccccc
Q 023142 176 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKEND 254 (286)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~~~~~~ 254 (286)
....|..++++.|+++.||..|.+++.|++|.|.+|-|+ .-|..|-..+..+....+..+.
T Consensus 209 ----------------~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq--SPPAqIC~kGkVHIFKyL~~qA 269 (722)
T KOG0532|consen 209 ----------------CSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ--SPPAQICEKGKVHIFKYLSTQA 269 (722)
T ss_pred ----------------hCCceeeeecccCceeecchhhhhhhhheeeeeccCCCC--CChHHHHhccceeeeeeecchh
Confidence 123588999999999999999999999999999999996 4677777666666655555443
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.43 E-value=5.6e-14 Score=114.28 Aligned_cols=124 Identities=33% Similarity=0.467 Sum_probs=46.4
Q ss_pred EeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCC-CCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCC
Q 023142 25 DLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNL 103 (286)
Q Consensus 25 ~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~ 103 (286)
.+..+.|..++.... ...++.|+|++|.|+.|..++ .+.+|+.|++++|+|+.+. + +..++.|+.|++++|+|+.+
T Consensus 3 ~lt~~~i~~~~~~~n-~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~-l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 3 RLTANMIEQIAQYNN-PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-G-LPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS---S-
T ss_pred ccccccccccccccc-ccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-C-ccChhhhhhcccCCCCCCcc
Confidence 355566777776554 557899999999999998887 6899999999999999995 3 46899999999999999998
Q ss_pred CCCccC-CCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 104 VEIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 104 ~~~~~l-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
.+ .+ ..+++|+.|++++|+|..+.... .+..+++|+.|++.+|++...
T Consensus 80 ~~--~l~~~lp~L~~L~L~~N~I~~l~~l~--~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 80 SE--GLDKNLPNLQELYLSNNKISDLNELE--PLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp CH--HHHHH-TT--EEE-TTS---SCCCCG--GGGG-TT--EEE-TT-GGGGS
T ss_pred cc--chHHhCCcCCEEECcCCcCCChHHhH--HHHcCCCcceeeccCCcccch
Confidence 65 34 46899999999999999775532 578999999999999998643
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.40 E-value=1e-14 Score=140.25 Aligned_cols=185 Identities=16% Similarity=0.212 Sum_probs=107.0
Q ss_pred CCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142 41 EDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119 (286)
Q Consensus 41 l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~ 119 (286)
..+|+++++++|+++.+| ++..+.+|+.+...+|+++.+|..++ ..++|+.|.+.+|.+..+|+ ...+++.|++|+
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~-~~~~L~~l~~~~nel~yip~--~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRIS-RITSLVSLSAAYNELEYIPP--FLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHh-hhhhHHHHHhhhhhhhhCCC--cccccceeeeee
Confidence 346777777777777776 55677777777777777777766654 66677777777777777766 455677777777
Q ss_pred ecCCcCCCCCCchHHHHhhCCC-CcEEeCCCCChHHHHHHH----------------------HHhhcchhHHHH--Hhh
Q 023142 120 LLDNSITKKPNYRLYVIHKLKS-LRVLDFKKVKNKERMEAA----------------------SLFASEEMEEEA--KKE 174 (286)
Q Consensus 120 L~~N~l~~ip~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~----------------------~~~~~~~~~~~~--~~~ 174 (286)
|..|.+..+|.. .+..... |+.|..+.|++...+... ..+.+.....++ ...
T Consensus 317 L~~N~L~~lp~~---~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 317 LQSNNLPSLPDN---FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred ehhccccccchH---HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 777777777663 2222222 444555554443322000 000000000000 000
Q ss_pred hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCcc
Q 023142 175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKI 240 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~ 240 (286)
+...|+...+ .++..|+.|+|++|++++||..+.+|..|+.|....|++. .+| .+..
T Consensus 394 rL~~fpas~~------~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~--~fP-e~~~ 450 (1081)
T KOG0618|consen 394 RLNSFPASKL------RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL--SFP-ELAQ 450 (1081)
T ss_pred ccccCCHHHH------hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee--ech-hhhh
Confidence 1111222111 3566677777777777777777777777777777777773 466 4433
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.39 E-value=1.6e-14 Score=123.94 Aligned_cols=133 Identities=26% Similarity=0.270 Sum_probs=117.2
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 98 (286)
..|+.+|||+|.|+.+.....-.+.++.|++|+|.|..+.++..+++|+.|+|++|.++.+.. ....+.+.+.|.|+.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhhh
Confidence 358899999999999998887789999999999999999999999999999999999999854 4458889999999999
Q ss_pred cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME 157 (286)
Q Consensus 99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 157 (286)
.|..+.. +..+.+|..||+++|+|..+...+ .++++|.|.++.+.+|++..++.
T Consensus 363 ~iE~LSG---L~KLYSLvnLDl~~N~Ie~ldeV~--~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 363 KIETLSG---LRKLYSLVNLDLSSNQIEELDEVN--HIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hHhhhhh---hHhhhhheeccccccchhhHHHhc--ccccccHHHHHhhcCCCccccch
Confidence 9998754 888999999999999999765433 68999999999999999865543
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=6.1e-14 Score=129.16 Aligned_cols=173 Identities=25% Similarity=0.306 Sum_probs=82.3
Q ss_pred CCccEEEeeCCCCccccccccCCC-CcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEee
Q 023142 19 IKERELDLRGNKIAVIENLGATED-QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 96 (286)
+.++.|++.+|.++.++.....+. +|+.|++++|.+..+| .+..+++|+.|++++|+++.++.... .++.|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhh-hhhhhhheecc
Confidence 344444444444444444433332 4444444444444442 34444444444444444444433221 33444444444
Q ss_pred cCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhc
Q 023142 97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESM 176 (286)
Q Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (286)
+|+++.+|. ....+..|..|.+++|++..++. .+..+.++..+.+..|++...
T Consensus 195 ~N~i~~l~~--~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~~--------------------- 247 (394)
T COG4886 195 GNKISDLPP--EIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLEDL--------------------- 247 (394)
T ss_pred CCccccCch--hhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeeec---------------------
Confidence 444444443 12223334444444443332222 234444444444444432211
Q ss_pred ccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 177 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
+ ...+.+.+++.+++++|+++.++. ++...+++.+++++|.+.
T Consensus 248 ----~------~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 248 ----P------ESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ----c------chhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 0 111345567777778887777776 777777777777777663
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-13 Score=120.46 Aligned_cols=191 Identities=19% Similarity=0.204 Sum_probs=121.5
Q ss_pred CcCCCCCccEEEeeCCCCc--cc---cccccCCCCcCEEeccCCCCCCCC---------------CCCCCCCCCeEeccC
Q 023142 14 HFFNAIKERELDLRGNKIA--VI---ENLGATEDQFDTIDLSDNEIVKLE---------------NMPHLNRLGTLIINN 73 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~--~l---~~~~~~l~~L~~L~Ls~N~l~~i~---------------~~~~l~~L~~L~Ls~ 73 (286)
++..+++|++|+||.|.|. .+ ...+..+..|+.|.|.+|.+.... -.+.-+.|+++..++
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 3455667778888887775 22 244556777778888877776431 134456777777777
Q ss_pred CcCcccCC----ccccCCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCCCCCCchHH-HHhhCCCCcEE
Q 023142 74 NRITRINP----NIGEFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVL 145 (286)
Q Consensus 74 N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L 145 (286)
|++..-+. ..|+.++.|+.+.++.|.|..-.. ...|..|+.|++|||.+|-++.-....+. .+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 77776543 345566777777777777653211 12466777788888888777743222111 56677777777
Q ss_pred eCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-----HHHHHHHhcCCHH
Q 023142 146 DFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAIVNSQTLE 220 (286)
Q Consensus 146 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-----~ip~~i~~~~~L~ 220 (286)
++++|.+.... ...+...+. . ..++|.++.+..|.|+ .+...+...+.|.
T Consensus 247 ~l~dcll~~~G----------a~a~~~al~-----~----------~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 247 NLGDCLLENEG----------AIAFVDALK-----E----------SAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred ccccccccccc----------HHHHHHHHh-----c----------cCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 77777654321 111111111 1 1336889999999887 3446678899999
Q ss_pred HHHHHHHHH
Q 023142 221 EVARLEKVL 229 (286)
Q Consensus 221 ~l~l~~N~l 229 (286)
.|++++|.+
T Consensus 302 kLnLngN~l 310 (382)
T KOG1909|consen 302 KLNLNGNRL 310 (382)
T ss_pred HhcCCcccc
Confidence 999999999
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.32 E-value=7.4e-13 Score=113.73 Aligned_cols=177 Identities=21% Similarity=0.246 Sum_probs=110.8
Q ss_pred CCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC-------------------------CCCCCCCCeEecc
Q 023142 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-------------------------MPHLNRLGTLIIN 72 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-------------------------~~~l~~L~~L~Ls 72 (286)
+.+|..+.+|++.-..|-+....-+.|+++...+..+...|. +.....|+.++|+
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS 292 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS 292 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence 455666666666555554444444566666665555443221 1122456666666
Q ss_pred CCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 73 NNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 73 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
+|.|+.++.+. .-.|.++.|++++|.|..+.. +..+++|+.|||++|.++.+.. .-..+.+.+.|.+++|.+
T Consensus 293 ~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~G----wh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 293 GNLITQIDESV-KLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVG----WHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred ccchhhhhhhh-hhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhh----hHhhhcCEeeeehhhhhH
Confidence 66666665544 355666666666666666532 5566666666666666666655 234556666666666655
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 023142 153 KERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip--~~i~~~~~L~~l~l~~N~l~ 230 (286)
.+.. +.+++-+|+.+++.+|+|..+. ..|++++-|+.+.+.+|-+.
T Consensus 365 E~LS--------------------------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 365 ETLS--------------------------------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhh--------------------------------hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 4332 2234557899999999999776 57899999999999999984
Q ss_pred cCCCCC
Q 023142 231 SGQLPA 236 (286)
Q Consensus 231 ~g~iP~ 236 (286)
.+|.
T Consensus 413 --~~vd 416 (490)
T KOG1259|consen 413 --GSVD 416 (490)
T ss_pred --ccch
Confidence 3554
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.30 E-value=8.3e-13 Score=136.45 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=54.5
Q ss_pred CCCCccEEEeeCCCCccccccccCCCCcCEEeccCCC-CCCCCCCCCCCCCCeEeccCC-cCcccCCccccCCCCccEEE
Q 023142 17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE-IVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 94 (286)
.+.+|+.|++++|++..++..+..+++|+.|+|+++. +..+|.+..+++|+.|+|++| .+..+|.. +..+++|+.|+
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~ 687 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLD 687 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchh-hhccCCCCEEe
Confidence 4566777777777777666656667777777777653 556666666777777777665 34445433 34666666666
Q ss_pred eecC-cCCCCC
Q 023142 95 LTNN-RLVNLV 104 (286)
Q Consensus 95 Ls~N-~i~~~~ 104 (286)
+++| .+..+|
T Consensus 688 L~~c~~L~~Lp 698 (1153)
T PLN03210 688 MSRCENLEILP 698 (1153)
T ss_pred CCCCCCcCccC
Confidence 6664 344444
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.21 E-value=1.1e-12 Score=116.84 Aligned_cols=36 Identities=8% Similarity=0.111 Sum_probs=22.6
Q ss_pred CCccCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHh
Q 023142 195 TPKVVAPTPEQII-----AIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 195 ~l~~l~ls~n~l~-----~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
.|+.++++.|.++ .+...+..+++|+++++++|.+.
T Consensus 251 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 251 SLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred CceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 4566666666552 45556666677777777777663
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=1.3e-12 Score=120.25 Aligned_cols=136 Identities=22% Similarity=0.264 Sum_probs=118.3
Q ss_pred CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 90 (286)
|..+.++..|+.|+|+.|+++.+|..++.|+ |+.|-+++|+++.+| .++.+..|..|+.+.|.+..+|+.. .++.+|
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql-~~l~sl 191 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQL-GYLTSL 191 (722)
T ss_pred chhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHh-hhHHHH
Confidence 6677888889999999999999998888665 899999999999887 7888899999999999999997766 588899
Q ss_pred cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHH
Q 023142 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERM 156 (286)
Q Consensus 91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~ 156 (286)
+.|++..|.+..+|+ .+. .-.|..||+++|+++.||- .|.+|++|++|-|.+|++..-+
T Consensus 192 r~l~vrRn~l~~lp~--El~-~LpLi~lDfScNkis~iPv----~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 192 RDLNVRRNHLEDLPE--ELC-SLPLIRLDFSCNKISYLPV----DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHHHHhhhhhhhCCH--HHh-CCceeeeecccCceeecch----hhhhhhhheeeeeccCCCCCCh
Confidence 999999999999887 666 4468999999999999998 7999999999999999986543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=4.2e-12 Score=116.95 Aligned_cols=183 Identities=25% Similarity=0.326 Sum_probs=144.7
Q ss_pred cCHHHHhCCCCcCCCC--CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCC-CCCCCCeEeccCCcCcccC
Q 023142 4 LTADLIWKSPHFFNAI--KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMP-HLNRLGTLIINNNRITRIN 80 (286)
Q Consensus 4 Lt~~~i~~~~~~~~l~--~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~l~~L~~L~Ls~N~l~~l~ 80 (286)
+..+.+.+.+...... +|+.|++++|++..+|..+..+++|+.|++++|+++.++... .++.|+.|++++|+++.+|
T Consensus 123 l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 123 LDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred cCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCc
Confidence 4455566655555554 899999999999999877778999999999999999998554 9999999999999999998
Q ss_pred CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS 160 (286)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 160 (286)
+.. .....|++|.+++|.+...+. .+.++.++..+.+.+|++..++. .+..++.++.|++++|.+..+..
T Consensus 203 ~~~-~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~----~~~~l~~l~~L~~s~n~i~~i~~--- 272 (394)
T COG4886 203 PEI-ELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPE----SIGNLSNLETLDLSNNQISSISS--- 272 (394)
T ss_pred hhh-hhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccc----hhccccccceecccccccccccc---
Confidence 754 345669999999996555544 58888899999999999988766 68899999999999998765421
Q ss_pred HhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 023142 161 LFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARL 225 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~ 225 (286)
.+.+.++..++++.|.++.++.....+.........
T Consensus 273 -----------------------------~~~~~~l~~L~~s~n~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T COG4886 273 -----------------------------LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308 (394)
T ss_pred -----------------------------ccccCccCEEeccCccccccchhhhccchhHHhhhh
Confidence 112557889999999998776666555555554444
No 31
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.17 E-value=1.9e-12 Score=120.13 Aligned_cols=195 Identities=25% Similarity=0.231 Sum_probs=140.5
Q ss_pred CCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC-CCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
.+..++.+.+..|.|..+...+..+.+|+.|++.+|.|..+.. +..+++|++|++++|+|+.+.. +..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhhee
Confidence 4566777778888888766656668899999999999999887 8889999999999999998854 246777999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHH-HhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV-IHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE 174 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
++|.|+.+.. +..++.|+.+++++|.++.+.. . ...+.+++.+.+.+|.+..+........ ... . .+
T Consensus 148 ~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~----~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~-l~~---~-~l 215 (414)
T KOG0531|consen 148 SGNLISDISG---LESLKSLKLLDLSYNRIVDIEN----DELSELISLEELDLGGNSIREIEGLDLLKK-LVL---L-SL 215 (414)
T ss_pred ccCcchhccC---CccchhhhcccCCcchhhhhhh----hhhhhccchHHHhccCCchhcccchHHHHH-HHH---h-hc
Confidence 9999998865 6668899999999999988765 2 4788888999999998776543321111 100 0 11
Q ss_pred hcccCCCCCCCCCChhhhccC--CccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 175 SMKTLMPVEVPNVSEEEEQQT--PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~--l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
..+.+..- .+...+.. +..+++++|.+..++..+..+..+..+++.+|.+.
T Consensus 216 ~~n~i~~~-----~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 216 LDNKISKL-----EGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccceec-----cCcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 11111110 00011222 67888888888887777788888888888888874
No 32
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.15 E-value=9.3e-11 Score=121.40 Aligned_cols=209 Identities=17% Similarity=0.191 Sum_probs=130.7
Q ss_pred CCcCCC-CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCc-CcccCCccccCCCC
Q 023142 13 PHFFNA-IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNR-ITRINPNIGEFLPK 89 (286)
Q Consensus 13 ~~~~~l-~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~ 89 (286)
..|..+ .+|+.|.+.++.++.+|..+. +.+|+.|++++|.+..++ ++..+++|+.|+|+++. +..+|. +..+++
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~-~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~ 658 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFR-PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATN 658 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCC-ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCc
Confidence 334443 357888888888888887664 678888888888888775 67788888888888764 566653 457888
Q ss_pred ccEEEeecCc-CCCCCCCccCCCCCCccEEEecCC-cCCCCCCchHHHHhhCCCCcEEeCCCCChH-HHHHHHHHhhcch
Q 023142 90 LHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDN-SITKKPNYRLYVIHKLKSLRVLDFKKVKNK-ERMEAASLFASEE 166 (286)
Q Consensus 90 L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~L~~N-~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~~ 166 (286)
|+.|++++|. +..+|. .+.++++|+.|++++| .+..+|.. + .+++|+.|++++|... ..+.. .....
T Consensus 659 Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~ 728 (1153)
T PLN03210 659 LETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKSFPDI---STNIS 728 (1153)
T ss_pred ccEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCccccccc---cCCcC
Confidence 8999998874 666665 6888888888888875 56677762 2 5777777777776421 11100 00000
Q ss_pred hHHHHHhhhcccCCCCC----------------------CCCCCh--hhhccCCccCCCCHHHH-HHHHHHHHhcCCHHH
Q 023142 167 MEEEAKKESMKTLMPVE----------------------VPNVSE--EEEQQTPKVVAPTPEQI-IAIKAAIVNSQTLEE 221 (286)
Q Consensus 167 ~~~~~~~~~~~~~~~~~----------------------~~~~~~--~~~~~~l~~l~ls~n~l-~~ip~~i~~~~~L~~ 221 (286)
...+ .......+ |.. ...+.. .....+|+.+++++|.. ..+|..++++++|+.
T Consensus 729 ~L~L-~~n~i~~l-P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~ 806 (1153)
T PLN03210 729 WLDL-DETAIEEF-PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806 (1153)
T ss_pred eeec-CCCccccc-cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCE
Confidence 0000 00000000 000 000000 01234677888887754 478888999999999
Q ss_pred HHHHHHH-HhcCCCCCCC
Q 023142 222 VARLEKV-LKSGQLPADL 238 (286)
Q Consensus 222 l~l~~N~-l~~g~iP~~~ 238 (286)
|++.++. + +.+|..+
T Consensus 807 L~Ls~C~~L--~~LP~~~ 822 (1153)
T PLN03210 807 LEIENCINL--ETLPTGI 822 (1153)
T ss_pred EECCCCCCc--CeeCCCC
Confidence 9988753 4 5688765
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.14 E-value=3.2e-11 Score=81.05 Aligned_cols=61 Identities=38% Similarity=0.627 Sum_probs=38.9
Q ss_pred CCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcC
Q 023142 64 NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSI 125 (286)
Q Consensus 64 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 125 (286)
++|++|++++|+|+.+++..|.++++|++|++++|.|+.+++ ..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 355666666666666666666666666666666666666655 5666666666666666653
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.11 E-value=5.8e-12 Score=112.25 Aligned_cols=135 Identities=21% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCccEEEeeCCCCc-----cccccccCCCCcCEEeccCCCCCCCC--------CCCCCCCCCeEeccCCcCcccCCcccc
Q 023142 19 IKERELDLRGNKIA-----VIENLGATEDQFDTIDLSDNEIVKLE--------NMPHLNRLGTLIINNNRITRINPNIGE 85 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~i~--------~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 85 (286)
..|+.|+++++.++ .++..+...+.++.|+++++.+...+ .+..+++|+.|++++|.+....+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 44666666666653 23333444555666666666554211 234455666666666665533222222
Q ss_pred CCC---CccEEEeecCcCCCCCC---CccCCCC-CCccEEEecCCcCCCCC-CchHHHHhhCCCCcEEeCCCCChH
Q 023142 86 FLP---KLHTLVLTNNRLVNLVE---IDPLTSL-PKLQFLSLLDNSITKKP-NYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 86 ~l~---~L~~L~Ls~N~i~~~~~---~~~l~~l-~~L~~L~L~~N~l~~ip-~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
.+. +|++|++++|.++.... ...+..+ ++|+.|++++|.++... ......+..+++|++|++++|.+.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 222 26666666665552110 0123334 55666666666655211 001113445555666666666554
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=1.1e-10 Score=78.39 Aligned_cols=59 Identities=36% Similarity=0.572 Sum_probs=43.4
Q ss_pred CCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcC
Q 023142 42 DQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100 (286)
Q Consensus 42 ~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i 100 (286)
++|++|++++|+|+.+| .|.++++|++|++++|+++.+++..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35677777777777665 567777777777777777777777777777777777777764
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2e-11 Score=109.39 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=119.9
Q ss_pred CCCCCccEEEeeCCCCcccc---ccccCCCCcCEEeccCCCCCCC-C--CCCCCCCCCeEeccCCcCcccC-CccccCCC
Q 023142 16 FNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVKL-E--NMPHLNRLGTLIINNNRITRIN-PNIGEFLP 88 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i-~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~ 88 (286)
..|++++.|+||+|-|..+- .....+++|+.|+|+.|++... . .-..+++|+.|.|+.|.++.-. ..+...+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 45677777888877766432 3445677778888887777643 2 1235667777777777776321 12334667
Q ss_pred CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhH
Q 023142 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEME 168 (286)
Q Consensus 89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 168 (286)
+|+.|+|..|..-.+.. .....+..|+.|+|++|++-..+... ..+.++.|+.|+++.+.+.++. +......
T Consensus 223 sl~~L~L~~N~~~~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~--~~~~l~~L~~Lnls~tgi~si~-----~~d~~s~ 294 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKA-TSTKILQTLQELDLSNNNLIDFDQGY--KVGTLPGLNQLNLSSTGIASIA-----EPDVESL 294 (505)
T ss_pred cHHHhhhhcccccceec-chhhhhhHHhhccccCCccccccccc--ccccccchhhhhccccCcchhc-----CCCccch
Confidence 77777777774222222 23445667777888887777655321 5677777777777777765542 1111100
Q ss_pred HHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 023142 169 EEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip--~~i~~~~~L~~l~l~~N~l~ 230 (286)
. ......+|++|+++.|+|...+ ..+..+.+|..|....|.+.
T Consensus 295 ~-------------------kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 295 D-------------------KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred h-------------------hhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 0 1123557999999999997665 57788888999888888875
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.93 E-value=2.7e-11 Score=114.56 Aligned_cols=135 Identities=28% Similarity=0.363 Sum_probs=101.6
Q ss_pred CCCcCCCCCccEEEeeCCCCcccccc----------cc----------------------CCCCcCEEeccCCCCCCCC-
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENL----------GA----------------------TEDQFDTIDLSDNEIVKLE- 58 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~----------~~----------------------~l~~L~~L~Ls~N~l~~i~- 58 (286)
|..++.+..|++|.|.++.|...-+. ++ ....|.+.++++|.++.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~ 181 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDE 181 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHH
Confidence 55677888999999999887532111 10 1235666777888887774
Q ss_pred CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhh
Q 023142 59 NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHK 138 (286)
Q Consensus 59 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~ 138 (286)
++.-++.|+.|+|++|+++.+. ....|++|++|||++|.++.+|-+ ...+|. |..|.+++|.++.+.+ +.+
T Consensus 182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l-~~~gc~-L~~L~lrnN~l~tL~g-----ie~ 252 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQL-SMVGCK-LQLLNLRNNALTTLRG-----IEN 252 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcccccc-chhhhh-heeeeecccHHHhhhh-----HHh
Confidence 6777888999999999998885 346888999999999999888873 444555 8999999998887754 788
Q ss_pred CCCCcEEeCCCCChHHH
Q 023142 139 LKSLRVLDFKKVKNKER 155 (286)
Q Consensus 139 l~~L~~L~l~~n~~~~~ 155 (286)
+.+|+.||+++|-+.+.
T Consensus 253 LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhhccchhHhhhhcc
Confidence 89999999999866543
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.90 E-value=1.8e-11 Score=115.75 Aligned_cols=129 Identities=22% Similarity=0.203 Sum_probs=104.3
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 99 (286)
+|...++++|.+..+...+.-++.|+.|+|++|+++++..+..|+.|++|+|++|++..+|.-...+|. |..|.+++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 577788889999888877777889999999999999888888899999999999999988754333444 8999999999
Q ss_pred CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
++.+.. +.++++|+.||+++|-|...... ..++.+..|+.|.|.+|++.-
T Consensus 244 l~tL~g---ie~LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 244 LTTLRG---IENLKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHhhhh---HHhhhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence 888764 77888999999999988754332 147778888899999998743
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.88 E-value=3e-10 Score=105.48 Aligned_cols=142 Identities=35% Similarity=0.378 Sum_probs=113.2
Q ss_pred cCHHHHhC-CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142 4 LTADLIWK-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (286)
Q Consensus 4 Lt~~~i~~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~ 82 (286)
+..+.|.. ...+..+.+|..|++.+|+|..+...+..+++|++|++++|.|+.+..+..++.|+.|++++|.|+.+..
T Consensus 79 l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~- 157 (414)
T KOG0531|consen 79 LRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG- 157 (414)
T ss_pred cchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-
Confidence 34556666 3347888999999999999999988666799999999999999999999999999999999999999854
Q ss_pred cccCCCCccEEEeecCcCCCCCCCcc-CCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 83 IGEFLPKLHTLVLTNNRLVNLVEIDP-LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~-l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
+..++.|+.+++++|.++.+.. . ...+.+++.+++.+|.+..+.. +..+..+..+++..|.+..
T Consensus 158 -~~~l~~L~~l~l~~n~i~~ie~--~~~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 158 -LESLKSLKLLDLSYNRIVDIEN--DELSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred -CccchhhhcccCCcchhhhhhh--hhhhhccchHHHhccCCchhcccc-----hHHHHHHHHhhccccccee
Confidence 3468999999999999998865 2 4788899999999999887754 2333344444555555543
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=8.8e-09 Score=100.25 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=74.9
Q ss_pred CcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEe
Q 023142 43 QFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSL 120 (286)
Q Consensus 43 ~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L 120 (286)
.++.|+|++|.++ .+| .+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+++..+ ..++++++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP-~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP-ESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCc-hHHhcCCCCCEEEC
Confidence 3677888888887 345 67778888888888888876545555678888888888888876444 46778888888888
Q ss_pred cCCcCC-CCCCchHHHHhh-CCCCcEEeCCCCC
Q 023142 121 LDNSIT-KKPNYRLYVIHK-LKSLRVLDFKKVK 151 (286)
Q Consensus 121 ~~N~l~-~ip~~~~~~l~~-l~~L~~L~l~~n~ 151 (286)
++|+++ .+|. .+.. +.++..+++.+|.
T Consensus 498 s~N~l~g~iP~----~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPA----ALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCCh----HHhhccccCceEEecCCc
Confidence 888877 5665 3443 3456677777775
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.77 E-value=1.5e-08 Score=98.55 Aligned_cols=83 Identities=25% Similarity=0.343 Sum_probs=52.5
Q ss_pred CCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcE
Q 023142 66 LGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRV 144 (286)
Q Consensus 66 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~ 144 (286)
++.|+|++|.+++..+..+..+++|+.|+|++|.|++..+ ..++.+++|+.|+|++|+++ .+|. .++.+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-PSLGSITSLEVLDLSYNSFNGSIPE----SLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC-hHHhCCCCCCEEECCCCCCCCCCch----HHhcCCCCCE
Confidence 5566677776665444445566677777777776664333 25666667777777777666 4555 5666777777
Q ss_pred EeCCCCChH
Q 023142 145 LDFKKVKNK 153 (286)
Q Consensus 145 L~l~~n~~~ 153 (286)
|++++|.+.
T Consensus 495 L~Ls~N~l~ 503 (623)
T PLN03150 495 LNLNGNSLS 503 (623)
T ss_pred EECcCCccc
Confidence 777766654
No 42
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.70 E-value=8.2e-09 Score=87.35 Aligned_cols=122 Identities=28% Similarity=0.415 Sum_probs=101.5
Q ss_pred ccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCC--cCcc-cCCccccCCCCccEEEeecCcCCCCCCCccCC
Q 023142 34 IENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN--RITR-INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT 110 (286)
Q Consensus 34 l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N--~l~~-l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~ 110 (286)
+....-.+..|+.|.+.+..++.+..|..+++|++|.++.| ++.. ++..+ ..+|+|++|++++|+|+.+..+..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhh
Confidence 44555557788888899999998889999999999999999 5554 33333 46799999999999999776666688
Q ss_pred CCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHH
Q 023142 111 SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERM 156 (286)
Q Consensus 111 ~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~ 156 (286)
.+.+|..|++.+|..+.+..|+-..+..+++|.+||.....-.+.+
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 8899999999999999999999889999999999998887655544
No 43
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.2e-09 Score=93.26 Aligned_cols=134 Identities=28% Similarity=0.350 Sum_probs=88.4
Q ss_pred CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (286)
Q Consensus 1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~ 80 (286)
|++||...+..-..-..+.+.+.|++.++.|+.|. -...|+.|+.|.|+-|+|+.+.
T Consensus 1 M~kLTe~mV~~raK~sdl~~vkKLNcwg~~L~DIs-----------------------ic~kMp~lEVLsLSvNkIssL~ 57 (388)
T KOG2123|consen 1 MVKLTESMVYIRAKCSDLENVKKLNCWGCGLDDIS-----------------------ICEKMPLLEVLSLSVNKISSLA 57 (388)
T ss_pred CchHHHHHHHHHHHhhHHHHhhhhcccCCCccHHH-----------------------HHHhcccceeEEeeccccccch
Confidence 77788777776655555666666666666666543 2233444444444444444442
Q ss_pred CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKERMEA 158 (286)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 158 (286)
+ +..|++|+.|+|..|.|.++.++.-+.++++|+.|+|..|+... =+.|+...+..+|+|+.||-....-.+...+
T Consensus 58 p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A 135 (388)
T KOG2123|consen 58 P--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA 135 (388)
T ss_pred h--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence 2 34566666666666666666555557788888888888888763 3567777899999999999887776666554
Q ss_pred H
Q 023142 159 A 159 (286)
Q Consensus 159 ~ 159 (286)
.
T Consensus 136 L 136 (388)
T KOG2123|consen 136 L 136 (388)
T ss_pred H
Confidence 4
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.66 E-value=1.1e-09 Score=84.16 Aligned_cols=109 Identities=24% Similarity=0.333 Sum_probs=74.1
Q ss_pred cCEEeccCCCCCCCC----CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142 44 FDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119 (286)
Q Consensus 44 L~~L~Ls~N~l~~i~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~ 119 (286)
+..++|+++++-.++ .+.....|+..+|++|.+..+|+.+...++.++.|++++|.|+.+|. .+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe--E~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE--ELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH--HHhhhHHhhhcc
Confidence 444556666555443 24455666667777777777776665566677777777777777776 477777777777
Q ss_pred ecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142 120 LLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEA 158 (286)
Q Consensus 120 L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 158 (286)
++.|++...|. .+..+.+|-+|+..+|.+.+++..
T Consensus 107 l~~N~l~~~p~----vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPR----VIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchH----HHHHHHhHHHhcCCCCccccCcHH
Confidence 77777777766 566677777777777777666544
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7e-09 Score=93.35 Aligned_cols=125 Identities=23% Similarity=0.379 Sum_probs=70.7
Q ss_pred CCCcCEEeccCCCCCCCC---CCCCCCCCCeEeccCCcCcccCCcc------ccCCCCccEEEeecCcCCCCCCCccCCC
Q 023142 41 EDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNI------GEFLPKLHTLVLTNNRLVNLVEIDPLTS 111 (286)
Q Consensus 41 l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~~~------~~~l~~L~~L~Ls~N~i~~~~~~~~l~~ 111 (286)
+..|+.|||++|.+...+ ..+.++.|..|+++.+.|+++.... ...+++|++|++..|+|..|+.+..+..
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~ 324 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRT 324 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhc
Confidence 345555666666555443 3455666666666666666542111 1245666666666666666666555555
Q ss_pred CCCccEEEecCCcCCCCCC-chHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcc
Q 023142 112 LPKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASE 165 (286)
Q Consensus 112 l~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 165 (286)
+++|+.|.+-.|.+..-.. ..+..++.+++|..|+-..+...++..++..|...
T Consensus 325 l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~eRR~AEl~~~~~ 379 (505)
T KOG3207|consen 325 LENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNERRDAELYYLSK 379 (505)
T ss_pred cchhhhhhcccccccccccceeEEeeeehhhhhhhcccccChHHhhhhhhhHHhh
Confidence 6666666666666653211 11124566666666666666666776666666555
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.54 E-value=5.2e-08 Score=83.10 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=87.2
Q ss_pred CCcCCCCCccEEEeeCCCCc-ccc----ccccCCCCcCEEeccCCCCCCCC--C-------------CCCCCCCCeEecc
Q 023142 13 PHFFNAIKERELDLRGNKIA-VIE----NLGATEDQFDTIDLSDNEIVKLE--N-------------MPHLNRLGTLIIN 72 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~-~l~----~~~~~l~~L~~L~Ls~N~l~~i~--~-------------~~~l~~L~~L~Ls 72 (286)
+.+..||+|+..+||.|.|. ..| +.++..+.|.+|.|++|.+..+. . ...-|.|+++.+.
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 44667788888888888776 333 34556677888888888776552 1 2345677788888
Q ss_pred CCcCcccCCc----cccCCCCccEEEeecCcCCCC--CC--CccCCCCCCccEEEecCCcCCCCCCchH-HHHhhCCCCc
Q 023142 73 NNRITRINPN----IGEFLPKLHTLVLTNNRLVNL--VE--IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLR 143 (286)
Q Consensus 73 ~N~l~~l~~~----~~~~l~~L~~L~Ls~N~i~~~--~~--~~~l~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~ 143 (286)
.|++...+.. .+..-..|+.+-+..|.|..- .. +..+..+.+|+.||+.+|-++......+ .+++.++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 8877765431 122224677777777776532 11 0123356778888888887774432221 2566677777
Q ss_pred EEeCCCCChH
Q 023142 144 VLDFKKVKNK 153 (286)
Q Consensus 144 ~L~l~~n~~~ 153 (286)
.|.+..|-++
T Consensus 246 EL~lnDClls 255 (388)
T COG5238 246 ELRLNDCLLS 255 (388)
T ss_pred hccccchhhc
Confidence 7777777554
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.52 E-value=9e-08 Score=59.59 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=22.2
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE 58 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~ 58 (286)
+|++|++++|+|+.+|+.+.++++|++|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 456666666666666655555666666666666655544
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.47 E-value=4.2e-09 Score=81.02 Aligned_cols=108 Identities=24% Similarity=0.256 Sum_probs=90.8
Q ss_pred CccEEEeeCCCCccccccc---cCCCCcCEEeccCCCCCCCC-CC-CCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 20 KERELDLRGNKIAVIENLG---ATEDQFDTIDLSDNEIVKLE-NM-PHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~---~~l~~L~~L~Ls~N~l~~i~-~~-~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
.+..++|+.|++-.+++.. .....|...+|++|.+.++| .| ...+.++.|+|++|.|+++|.. +..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcc
Confidence 4567899999888776543 44567888899999999997 45 4556899999999999999887 57999999999
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
+++|.|...|. .+..+.+|-.|+..+|.+..||-
T Consensus 107 l~~N~l~~~p~--vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 107 LRFNPLNAEPR--VIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cccCccccchH--HHHHHHhHHHhcCCCCccccCcH
Confidence 99999999876 56679999999999999998876
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.41 E-value=1e-07 Score=83.77 Aligned_cols=165 Identities=20% Similarity=0.169 Sum_probs=111.7
Q ss_pred CCCCcCEEeccCCCCC--CCCC----CCCCCCCCeEeccCCcCcccCCcc-------------ccCCCCccEEEeecCcC
Q 023142 40 TEDQFDTIDLSDNEIV--KLEN----MPHLNRLGTLIINNNRITRINPNI-------------GEFLPKLHTLVLTNNRL 100 (286)
Q Consensus 40 ~l~~L~~L~Ls~N~l~--~i~~----~~~l~~L~~L~Ls~N~l~~l~~~~-------------~~~l~~L~~L~Ls~N~i 100 (286)
.+++|++|+||.|.|. .++. +.++..|+.|+|.+|.+.-..... ...-+.|+++..++|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4678999999999887 3332 467889999999999887543221 12346899999999988
Q ss_pred CCCCCC---ccCCCCCCccEEEecCCcCCCCCC-chHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhc
Q 023142 101 VNLVEI---DPLTSLPKLQFLSLLDNSITKKPN-YRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESM 176 (286)
Q Consensus 101 ~~~~~~---~~l~~l~~L~~L~L~~N~l~~ip~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (286)
-..+.. ..|..++.|+.+.+..|.|..-.. .....+.+|++|+.||++.|.++.. ....+...+.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----------gs~~LakaL~- 238 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----------GSVALAKALS- 238 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----------HHHHHHHHhc-
Confidence 765531 136677899999999998874222 2233789999999999999976533 1112222111
Q ss_pred ccCCCCCCCCCChhhhccCCccCCCCHHHHH-----HHHHHH-HhcCCHHHHHHHHHHHh
Q 023142 177 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-----AIKAAI-VNSQTLEEVARLEKVLK 230 (286)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-----~ip~~i-~~~~~L~~l~l~~N~l~ 230 (286)
.++.|..+++++..++ .+-.++ ...++|++|.+.+|.+.
T Consensus 239 ---------------s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 239 ---------------SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred ---------------ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 1334556666665554 555666 34699999999999986
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.37 E-value=2.4e-07 Score=92.85 Aligned_cols=105 Identities=25% Similarity=0.264 Sum_probs=51.5
Q ss_pred CCCccEEEeeCCC--Ccccc-ccccCCCCcCEEeccCC-CCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 18 AIKERELDLRGNK--IAVIE-NLGATEDQFDTIDLSDN-EIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 18 l~~L~~L~Ls~n~--l~~l~-~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
+++|+.|-+.+|. +..++ ..|..++.|++|||++| .+..+| .++.+-+|++|++++..++.+|.++ ..+..|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-GNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-HHHHhhhe
Confidence 3445555555553 34444 22344555555555544 234455 3455555555555555555555444 35555555
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCc
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS 124 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 124 (286)
|++..+.-...++ .....+++|++|.+....
T Consensus 623 Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 623 LNLEVTGRLESIP-GILLELQSLRVLRLPRSA 653 (889)
T ss_pred ecccccccccccc-chhhhcccccEEEeeccc
Confidence 5555554222222 234445555555554433
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=9.6e-08 Score=82.46 Aligned_cols=81 Identities=25% Similarity=0.403 Sum_probs=64.3
Q ss_pred CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCC-CC--CchHHHHhhCCCCcEEeCCCCChHHHHHHHHHh
Q 023142 86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK-KP--NYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF 162 (286)
Q Consensus 86 ~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~-ip--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 162 (286)
.++.+..|+|+.|+|.+|..++.+.+++.|..|.+++|++.. +. ..++-.++++++++.|+.+...-.++..++..|
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~f 301 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERRF 301 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHHH
Confidence 456677788888888888877889999999999999999873 21 112236889999999999988888888888777
Q ss_pred hcch
Q 023142 163 ASEE 166 (286)
Q Consensus 163 ~~~~ 166 (286)
....
T Consensus 302 VRyy 305 (418)
T KOG2982|consen 302 VRYY 305 (418)
T ss_pred HHHH
Confidence 6655
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=3.4e-07 Score=56.98 Aligned_cols=39 Identities=38% Similarity=0.555 Sum_probs=19.7
Q ss_pred CCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCC
Q 023142 65 RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLV 104 (286)
Q Consensus 65 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~ 104 (286)
+|++|++++|+|+.+++. +..|++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555442 245555555555555555543
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.34 E-value=3.9e-07 Score=91.43 Aligned_cols=132 Identities=25% Similarity=0.345 Sum_probs=108.9
Q ss_pred CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCC--CCCCCC--CCCCCCCCeEeccCC-cCcccCCccccC
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNE--IVKLEN--MPHLNRLGTLIINNN-RITRINPNIGEF 86 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~--l~~i~~--~~~l~~L~~L~Ls~N-~l~~l~~~~~~~ 86 (286)
.+...+....+.+.+.+|.+..++.... ++.|++|-+..|. +..++. |..++.|+.|+|++| .+..+|..+ +.
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~ 593 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GE 593 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hh
Confidence 4455556778999999999998887665 5689999999997 677763 889999999999988 577887766 68
Q ss_pred CCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCC
Q 023142 87 LPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVK 151 (286)
Q Consensus 87 l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~ 151 (286)
+-+|++|++++..|+.+|. .+++++.|.+|++..+... .++. ....+.+|++|.+....
T Consensus 594 Li~LryL~L~~t~I~~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~----i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPS--GLGNLKKLIYLNLEVTGRLESIPG----ILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCccccch--HHHHHHhhheeccccccccccccc----hhhhcccccEEEeeccc
Confidence 9999999999999999997 8999999999999987654 4444 56779999998886654
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.33 E-value=1.7e-06 Score=66.58 Aligned_cols=120 Identities=15% Similarity=0.263 Sum_probs=67.9
Q ss_pred CCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
..|.++.+|+.+.+.. .+..++ ..+..+++|+.+.+..+ +..++ .|.++++++.+.+.. .+..++...|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4577888888888874 577776 56677778888888775 77665 577887888888865 677777777877888
Q ss_pred ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL 142 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L 142 (286)
|+.+.+..+ ++.++. ..|.++ .|+.+.+.. .+..++.. .|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~-~~~~i~~~---~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS-NITKIEEN---AFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHT-TTTTT--T--EEE-TT-B-SS-------GGG-----
T ss_pred ccccccCcc-ccEEch-hhhcCC-CceEEEECC-CccEECCc---cccccccC
Confidence 888888765 666665 577777 888888775 56666654 56666665
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=2.2e-06 Score=73.36 Aligned_cols=114 Identities=25% Similarity=0.227 Sum_probs=61.5
Q ss_pred CCCCcCEEeccCCCCCC-CC-----CCCCCCCCCeEeccCCcCcccCCccc-------------cCCCCccEEEeecCcC
Q 023142 40 TEDQFDTIDLSDNEIVK-LE-----NMPHLNRLGTLIINNNRITRINPNIG-------------EFLPKLHTLVLTNNRL 100 (286)
Q Consensus 40 ~l~~L~~L~Ls~N~l~~-i~-----~~~~l~~L~~L~Ls~N~l~~l~~~~~-------------~~l~~L~~L~Ls~N~i 100 (286)
.|++|+..+||.|.|.. .| -+++-+.|.+|.+++|.+.-+...-. ..-|.|+......|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 45666666666666652 22 24555666666666666554321110 1335666666666666
Q ss_pred CCCCCC---ccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 101 VNLVEI---DPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 101 ~~~~~~---~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
...+.. ..+..-..|+.+.+..|.|.. +....+..+..+.+|.+||++.|.++
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 554430 012223456666677666652 22223335666777777777777654
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.13 E-value=3.1e-06 Score=69.41 Aligned_cols=102 Identities=27% Similarity=0.392 Sum_probs=80.4
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCC-CCC-CCCCCCCeEeccCCcCcccCC-ccccCCCCccEEEee
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-ENM-PHLNRLGTLIINNNRITRINP-NIGEFLPKLHTLVLT 96 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls 96 (286)
....+||++|.+..++..- .++.|.+|.|++|+|+.| |.+ ..+++|..|.|.+|+|..+.. .-...||.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 4567899999998776544 488999999999999998 455 446789999999998887643 223578999999999
Q ss_pred cCcCCCCCC--CccCCCCCCccEEEecC
Q 023142 97 NNRLVNLVE--IDPLTSLPKLQFLSLLD 122 (286)
Q Consensus 97 ~N~i~~~~~--~~~l~~l~~L~~L~L~~ 122 (286)
+|.++.-.. ...+..+|+|+.||+..
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 999887554 13567899999999875
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=3.4e-07 Score=79.12 Aligned_cols=198 Identities=19% Similarity=0.168 Sum_probs=114.5
Q ss_pred EEEeeCCCCccccc---cccCCCCcCEEeccCCCCCCCC----CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 23 ELDLRGNKIAVIEN---LGATEDQFDTIDLSDNEIVKLE----NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 23 ~L~Ls~n~l~~l~~---~~~~l~~L~~L~Ls~N~l~~i~----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
.|.+.++.|...-+ .-..++.++.+||.+|.|+.+. -+.++|.|++|+|+.|+++......-....+|+.|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 44555555543321 1234677888888888888764 2467888888888888887543322124558888888
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCC--CCchHHHHhhC-CCCcEEeCCCCChHH---HHHHHHHhhcchhHH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK--PNYRLYVIHKL-KSLRVLDFKKVKNKE---RMEAASLFASEEMEE 169 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i--p~~~~~~l~~l-~~L~~L~l~~n~~~~---~~~~~~~~~~~~~~~ 169 (286)
.+..+..-..-..+..+|.++.|.++.|.+..+ .+. ..... +.+++|...+|.... +......|.......
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~---c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN---CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccc---cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 887665322112466788888888888855532 111 12222 245566666664321 122223343333111
Q ss_pred HHHh-hhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 023142 170 EAKK-ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK--AAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 170 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip--~~i~~~~~L~~l~l~~N~l~ 230 (286)
.... ++..+...+. ..+..+..|+|+.|+|.... .++.+.+.|..|.+.+|-+.
T Consensus 206 v~e~PlK~~s~ek~s-------e~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGS-------EPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred eecCcccchhhcccC-------CCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 1100 0001111111 12456778999999998444 78899999999999999885
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=5.1e-05 Score=69.49 Aligned_cols=115 Identities=21% Similarity=0.278 Sum_probs=71.4
Q ss_pred CCCCccEEEeeCCCCccccccccCCCCcCEEeccC-CCCCCCCCCCCCCCCCeEeccCC-cCcccCCccccCCCCccEEE
Q 023142 17 NAIKERELDLRGNKIAVIENLGATEDQFDTIDLSD-NEIVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~ 94 (286)
.+.+++.|++++|.|+.+|.. ..+|+.|.+++ +.++.+|..- .++|+.|.+++| .+..+|+ .|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~-------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL---PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE-------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC---CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc-------ccceEE
Confidence 457889999999999998842 34689999987 5566666321 257888888887 6665543 345555
Q ss_pred eecCc---CCCCCCCccCCC-----------------C-CCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142 95 LTNNR---LVNLVEIDPLTS-----------------L-PKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 95 Ls~N~---i~~~~~~~~l~~-----------------l-~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n 150 (286)
++.+. +..+|+ .+.. + ++|++|++++|....+|.. -..+|+.|+++.+
T Consensus 119 L~~n~~~~L~~LPs--sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~------LP~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDSIKNVPN--GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK------LPESLQSITLHIE 187 (426)
T ss_pred eCCCCCcccccCcc--hHhheeccccccccccccccccCCcccEEEecCCCcccCccc------ccccCcEEEeccc
Confidence 55544 233332 1111 1 3577777777776555541 1146677776655
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=7e-06 Score=80.51 Aligned_cols=135 Identities=19% Similarity=0.243 Sum_probs=99.5
Q ss_pred CCccEEEeeCCCCc--ccc-ccccCCCCcCEEeccCCCCCCCC---CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 19 IKERELDLRGNKIA--VIE-NLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~--~l~-~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
.+|+.|+++|...- ..| .....+|+|+.|.+++-.+..-. -+.++++|..||+|+.+++.+ .++ +.+.+|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHHH
Confidence 46888999886442 233 33356899999999987765322 357889999999999999988 444 68999999
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCc---hHHHHhhCCCCcEEeCCCCChHHH
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY---RLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~---~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
|.+.+=.|.....+..+-+|++|++||+|.......+.. -...-..+|.|+.||.++..+.+-
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999888887765555677899999999998776644411 011233589999999998887543
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.84 E-value=3.5e-05 Score=59.11 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=70.4
Q ss_pred ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCC
Q 023142 36 NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP 113 (286)
Q Consensus 36 ~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~ 113 (286)
..|.++.+|+.+.+.. .+..++ .|.++++|+.+.+..+ +..++...|..+++|+.+.+.. .+..++. ..|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD-NAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T-TTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc-ccccccc
Confidence 4566788999999885 677775 6889999999999885 8999888998998999999965 6666766 6888999
Q ss_pred CccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142 114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n 150 (286)
+|+.+.+..+ +..++.. .+..+ +|+.+.+..+
T Consensus 82 ~l~~i~~~~~-~~~i~~~---~f~~~-~l~~i~~~~~ 113 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSS---SFSNC-NLKEINIPSN 113 (129)
T ss_dssp TECEEEETTT--BEEHTT---TTTT--T--EEE-TTB
T ss_pred cccccccCcc-ccEEchh---hhcCC-CceEEEECCC
Confidence 9999999876 7777665 56776 8888888753
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=2.3e-05 Score=76.89 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=86.9
Q ss_pred CCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC--CccccCCCCccE
Q 023142 17 NAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHT 92 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~ 92 (286)
.+|.|+.|.+++-.+. .+.....++++|..||+|+.+++.+.+++.+++|+.|.+.+=.+..-. ...| .+++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCe
Confidence 3789999999998876 455666789999999999999999988999999999988876666432 2556 8999999
Q ss_pred EEeecCcCCCCCC-----CccCCCCCCccEEEecCCcCC
Q 023142 93 LVLTNNRLVNLVE-----IDPLTSLPKLQFLSLLDNSIT 126 (286)
Q Consensus 93 L~Ls~N~i~~~~~-----~~~l~~l~~L~~L~L~~N~l~ 126 (286)
||+|..+....+. +..-..||.|+.||.+++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9999987655432 122346999999999988765
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00014 Score=66.59 Aligned_cols=73 Identities=21% Similarity=0.304 Sum_probs=54.2
Q ss_pred CCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCC-cCcccCCccccCCCCccEEEeecC-cCCCCCCCccCCCCCCccE
Q 023142 40 TEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNN-RITRINPNIGEFLPKLHTLVLTNN-RLVNLVEIDPLTSLPKLQF 117 (286)
Q Consensus 40 ~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~l~~l~~L~~ 117 (286)
.+.+++.|++++|.|+.+|.+. .+|+.|.++++ .++.+|... .++|+.|++++| .+..+|+ .|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~--------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE--------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc--------ccce
Confidence 3688999999999999888543 47999999874 676665422 358999999998 6766654 3666
Q ss_pred EEecCCcC
Q 023142 118 LSLLDNSI 125 (286)
Q Consensus 118 L~L~~N~l 125 (286)
|++.++..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 66766654
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.41 E-value=5.4e-05 Score=64.43 Aligned_cols=103 Identities=23% Similarity=0.276 Sum_probs=72.4
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCC---CCC-CCCCCCCCCeEeccCCcCcccCC-ccccCCCCccEE
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIV---KLE-NMPHLNRLGTLIINNNRITRINP-NIGEFLPKLHTL 93 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~---~i~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L 93 (286)
..|+.|.+.+..++.+.+.. .+++|+.|.++.|.+. .++ -...+++|++|++++|+|..+.. .....+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 45677777777777655443 3889999999999554 333 34566999999999999885421 112467789999
Q ss_pred EeecCcCCCCCCC--ccCCCCCCccEEEecC
Q 023142 94 VLTNNRLVNLVEI--DPLTSLPKLQFLSLLD 122 (286)
Q Consensus 94 ~Ls~N~i~~~~~~--~~l~~l~~L~~L~L~~ 122 (286)
++.+|..+.+... ..|.-+++|++|+-..
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccc
Confidence 9999987775431 1366678888887554
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=5.5e-06 Score=71.82 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=92.3
Q ss_pred CCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCC-C-CCCCCCCCCCeEeccCC-cCcccC-CccccCCCCccE
Q 023142 19 IKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVK-L-ENMPHLNRLGTLIINNN-RITRIN-PNIGEFLPKLHT 92 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~-i-~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~~ 92 (286)
+.|++||||...|+ .+...+..|.+|+.|.+.++++.+ | -.+....+|+.|+|+.+ .++... .-.+..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35899999999988 566777789999999999999884 3 26788889999999876 455432 234678889999
Q ss_pred EEeecCcCCCCCCCc-cCCC-CCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 93 LVLTNNRLVNLVEID-PLTS-LPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~-~l~~-l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
|+++.+.+..-. +. .+.+ -++|+.|++++..-.-..........++|+|.+||++.|..
T Consensus 265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred cCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc
Confidence 999999765321 11 1222 24688888887643211111111567888888899888754
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=9.6e-06 Score=70.37 Aligned_cols=133 Identities=20% Similarity=0.209 Sum_probs=89.8
Q ss_pred cCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCC-CCCCCC---CCCCCCCCCeEeccCCcCcccCC--ccccCC
Q 023142 15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDN-EIVKLE---NMPHLNRLGTLIINNNRITRINP--NIGEFL 87 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l 87 (286)
+..|.+|+.|.+.++++. .+-..++.-.+|+.|+++.+ .|+... -+.+|+.|..|+|+++.++.-.. .+..--
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 456788999999999988 55566777788999999875 455432 36789999999999997654211 111112
Q ss_pred CCccEEEeecCc----CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC
Q 023142 88 PKLHTLVLTNNR----LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK 151 (286)
Q Consensus 88 ~~L~~L~Ls~N~----i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~ 151 (286)
++|+.|+++++. .+.+.. ....|++|.+|||++|.--. +..+..|..++.|++|.++.+-
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~t--L~~rcp~l~~LDLSD~v~l~--~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLST--LVRRCPNLVHLDLSDSVMLK--NDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHH--HHHhCCceeeeccccccccC--chHHHHHHhcchheeeehhhhc
Confidence 478888888763 122221 24568888888888764322 2334467788888888887763
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=1.7e-05 Score=68.25 Aligned_cols=83 Identities=27% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142 63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL 142 (286)
Q Consensus 63 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L 142 (286)
+.+.+.|++-++.|++| .++..++.|+.|.|+-|+|+.+.+ |..|++|+.|+|..|.|.++... .-+.++|+|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p---l~rCtrLkElYLRkN~I~sldEL--~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP---LQRCTRLKELYLRKNCIESLDEL--EYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh---HHHHHHHHHHHHHhcccccHHHH--HHHhcCchh
Confidence 45677889999999988 456789999999999999999876 88999999999999999987653 257899999
Q ss_pred cEEeCCCCCh
Q 023142 143 RVLDFKKVKN 152 (286)
Q Consensus 143 ~~L~l~~n~~ 152 (286)
+.|.+..|+-
T Consensus 91 r~LWL~ENPC 100 (388)
T KOG2123|consen 91 RTLWLDENPC 100 (388)
T ss_pred hhHhhccCCc
Confidence 9999999974
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.12 E-value=0.0031 Score=32.74 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=13.9
Q ss_pred CccEEEeeCCCCcccccccc
Q 023142 20 KERELDLRGNKIAVIENLGA 39 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~ 39 (286)
+|++|++++|+|+.+|..++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 46777777777777775544
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0041 Score=32.30 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=8.5
Q ss_pred CCeEeccCCcCcccCCc
Q 023142 66 LGTLIINNNRITRINPN 82 (286)
Q Consensus 66 L~~L~Ls~N~l~~l~~~ 82 (286)
|++|+|++|+|+.+|+.
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44555555555554443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.50 E-value=0.0095 Score=28.83 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=6.8
Q ss_pred CccEEEeeCCCCcccc
Q 023142 20 KERELDLRGNKIAVIE 35 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~ 35 (286)
+|+.|++++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555666666555544
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.36 E-value=0.00021 Score=60.11 Aligned_cols=82 Identities=18% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142 41 EDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119 (286)
Q Consensus 41 l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~ 119 (286)
+...+.||++.|++..+. .|+.++.|..|+++.|++..+|.+. .....+..+++..|..+..|. +++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~--s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPK--SQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCc--cccccCCcchhh
Confidence 444444555555444442 3444444444444444444443332 233334444444444444443 444444444444
Q ss_pred ecCCcC
Q 023142 120 LLDNSI 125 (286)
Q Consensus 120 L~~N~l 125 (286)
+..|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 444443
No 71
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.26 E-value=0.013 Score=55.15 Aligned_cols=89 Identities=26% Similarity=0.346 Sum_probs=62.6
Q ss_pred CCCCCCeEeccCCcCcccCC--ccccCCCCccEEEeecC--cCCCCCCCccCCCCCCccEEEecCCcCCCCCCch----H
Q 023142 62 HLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNN--RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR----L 133 (286)
Q Consensus 62 ~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N--~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~----~ 133 (286)
+.+.+..+.|++|++..+.. .+....|+|..|+|++| .+.....+..+++ ..|+.|.+.+|++++--..+ -
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHH
Confidence 45677888899998877643 33345689999999999 6666555444544 45999999999998532222 2
Q ss_pred HHHhhCCCCcEEeCCCCC
Q 023142 134 YVIHKLKSLRVLDFKKVK 151 (286)
Q Consensus 134 ~~l~~l~~L~~L~l~~n~ 151 (286)
+.-..+|+|..||.....
T Consensus 295 ~i~~~FPKL~~LDG~ev~ 312 (585)
T KOG3763|consen 295 AIRELFPKLLRLDGVEVQ 312 (585)
T ss_pred HHHHhcchheeecCcccC
Confidence 244589999999876554
No 72
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.24 E-value=0.013 Score=31.54 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=12.9
Q ss_pred CCCCeEeccCCcCcccCCccc
Q 023142 64 NRLGTLIINNNRITRINPNIG 84 (286)
Q Consensus 64 ~~L~~L~Ls~N~l~~l~~~~~ 84 (286)
++|++|+|++|+|+.+|++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665554
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.24 E-value=0.013 Score=31.54 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=12.9
Q ss_pred CCCCeEeccCCcCcccCCccc
Q 023142 64 NRLGTLIINNNRITRINPNIG 84 (286)
Q Consensus 64 ~~L~~L~Ls~N~l~~l~~~~~ 84 (286)
++|++|+|++|+|+.+|++.|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666666665554
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.19 E-value=0.00031 Score=59.13 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=81.0
Q ss_pred CCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 53 EIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 53 ~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
.++.+| .+......+.|+++.|++..+... |+-++.|..|+++.|.|..+|. .++.+..++.+++..|..+..|.
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~--d~~q~~e~~~~~~~~n~~~~~p~ 105 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPK--DAKQQRETVNAASHKNNHSQQPK 105 (326)
T ss_pred HhcccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChh--hHHHHHHHHHHHhhccchhhCCc
Confidence 344555 577788999999999999888655 3678899999999999999987 78889999999999999999998
Q ss_pred chHHHHhhCCCCcEEeCCCCChH
Q 023142 131 YRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 131 ~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
.+...++++++++.++.+.
T Consensus 106 ----s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 ----SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ----cccccCCcchhhhccCcch
Confidence 7999999999999999853
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.70 E-value=0.022 Score=27.55 Aligned_cols=6 Identities=50% Similarity=0.639 Sum_probs=2.1
Q ss_pred EeccCC
Q 023142 69 LIINNN 74 (286)
Q Consensus 69 L~Ls~N 74 (286)
|++++|
T Consensus 6 L~l~~n 11 (17)
T PF13504_consen 6 LDLSNN 11 (17)
T ss_dssp EEETSS
T ss_pred EECCCC
Confidence 333333
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.44 E-value=0.004 Score=58.80 Aligned_cols=182 Identities=23% Similarity=0.193 Sum_probs=101.2
Q ss_pred ccEEEeeCCCCcc-----ccccccCCCCcCEEeccCCCCCCCC------CCCCC-CCCCeEeccCCcCcccCC----ccc
Q 023142 21 ERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKLE------NMPHL-NRLGTLIINNNRITRINP----NIG 84 (286)
Q Consensus 21 L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i~------~~~~l-~~L~~L~Ls~N~l~~l~~----~~~ 84 (286)
+..|.|.+|.+.. +-..+....+|..|++++|.+.... .+... ..+++|++..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6667777777762 2234445667777888888777321 23332 566677777777765432 122
Q ss_pred cCCCCccEEEeecCcCCCCCC---CccCC----CCCCccEEEecCCcCCCCCCchHH-HHhhCCC-CcEEeCCCCChHHH
Q 023142 85 EFLPKLHTLVLTNNRLVNLVE---IDPLT----SLPKLQFLSLLDNSITKKPNYRLY-VIHKLKS-LRVLDFKKVKNKER 155 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~~~---~~~l~----~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~-L~~L~l~~n~~~~~ 155 (286)
.....++.++++.|.+....- ...+. ...++++|.+.++.++........ .+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 235677777777777642110 01222 355677777777777632221111 4555555 66677777776544
Q ss_pred H--HHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHH
Q 023142 156 M--EAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQI-----IAIKAAIVNSQTLEEVARLEKV 228 (286)
Q Consensus 156 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l-----~~ip~~i~~~~~L~~l~l~~N~ 228 (286)
. .....+.... ..+..+++..|.| ..+...+..+..++++.+..|.
T Consensus 249 g~~~L~~~l~~~~---------------------------~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 249 GVEKLLPCLSVLS---------------------------ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred HHHHHHHHhcccc---------------------------hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 1 0011111110 1233444444444 4677778888888888888887
Q ss_pred H
Q 023142 229 L 229 (286)
Q Consensus 229 l 229 (286)
+
T Consensus 302 l 302 (478)
T KOG4308|consen 302 L 302 (478)
T ss_pred c
Confidence 6
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.00 E-value=0.066 Score=28.72 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=8.9
Q ss_pred CCccEEEecCCcCCCCCC
Q 023142 113 PKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 113 ~~L~~L~L~~N~l~~ip~ 130 (286)
++|++|+|++|+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.00 E-value=0.066 Score=28.72 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=8.9
Q ss_pred CCccEEEecCCcCCCCCC
Q 023142 113 PKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 113 ~~L~~L~L~~N~l~~ip~ 130 (286)
++|++|+|++|+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 344555555555555544
No 79
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.26 E-value=0.027 Score=52.68 Aligned_cols=109 Identities=23% Similarity=0.225 Sum_probs=51.0
Q ss_pred CCCccEEEeeCC-CCcc--ccccccCCCCcCEEeccCC--CCCCCC-----CCCCCCCCCeEeccCCc-CcccCC-cccc
Q 023142 18 AIKERELDLRGN-KIAV--IENLGATEDQFDTIDLSDN--EIVKLE-----NMPHLNRLGTLIINNNR-ITRINP-NIGE 85 (286)
Q Consensus 18 l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N--~l~~i~-----~~~~l~~L~~L~Ls~N~-l~~l~~-~~~~ 85 (286)
++.|+.|.+.++ .++. +-.....++.|+.|+++++ .+...+ ....+.+|+.|++++.. +++..- .+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555554 3332 3333444666666666652 111111 12344666666666665 443321 1122
Q ss_pred CCCCccEEEeecCc-CCCCCCCccCCCCCCccEEEecCCcCC
Q 023142 86 FLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSIT 126 (286)
Q Consensus 86 ~l~~L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~ 126 (286)
.|++|+.|.+.++. ++...-......++.|+.|+++++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 35566666655554 333211112334566666666655443
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=90.40 E-value=0.27 Score=26.60 Aligned_cols=17 Identities=41% Similarity=0.722 Sum_probs=8.6
Q ss_pred CCcCEEeccCCCCCCCC
Q 023142 42 DQFDTIDLSDNEIVKLE 58 (286)
Q Consensus 42 ~~L~~L~Ls~N~l~~i~ 58 (286)
.+|+.|+|++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 34555555555555443
No 81
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=88.16 E-value=0.39 Score=25.98 Aligned_cols=19 Identities=53% Similarity=0.562 Sum_probs=16.2
Q ss_pred CCCccEEEeeCCCCccccc
Q 023142 18 AIKERELDLRGNKIAVIEN 36 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~ 36 (286)
+.+|+.|++++|.|+.+.+
T Consensus 1 L~~L~~L~L~~NkI~~IEn 19 (26)
T smart00365 1 LTNLEELDLSQNKIKKIEN 19 (26)
T ss_pred CCccCEEECCCCccceecC
Confidence 4689999999999987764
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.73 E-value=0.49 Score=25.53 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=8.7
Q ss_pred CccEEEeeCCCCccccc
Q 023142 20 KERELDLRGNKIAVIEN 36 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~ 36 (286)
+|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555555543
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=84.92 E-value=0.3 Score=45.68 Aligned_cols=110 Identities=23% Similarity=0.212 Sum_probs=74.6
Q ss_pred CCCCcCEEeccCC-CCCC--C-CCCCCCCCCCeEeccCC--cCcccC---CccccCCCCccEEEeecCc-CCCCCCCccC
Q 023142 40 TEDQFDTIDLSDN-EIVK--L-ENMPHLNRLGTLIINNN--RITRIN---PNIGEFLPKLHTLVLTNNR-LVNLVEIDPL 109 (286)
Q Consensus 40 ~l~~L~~L~Ls~N-~l~~--i-~~~~~l~~L~~L~Ls~N--~l~~l~---~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~l 109 (286)
.++.|+.|.+... .+.. + +....++.|+.|+++++ .+...+ ......+++|+.|+++++. ++...- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHH
Confidence 3678888888776 3443 2 34578899999999873 222222 1234567899999999988 665432 233
Q ss_pred C-CCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 110 T-SLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 110 ~-~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
. .|++|+.|.+.++. ++. .........++.|+.|+++.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~--~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD--EGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccch--hHHHHHHHhcCcccEEeeecCcc
Confidence 3 38999999977766 442 22222667899999999998875
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=0.27 Score=40.79 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCCCeEeccCCcCcccCCccccCCCCccEEEeecCc-CCCCCCCccCC-CCCCccEEEecCCcCCCCCCchHHHHhhCCC
Q 023142 64 NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR-LVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVIHKLKS 141 (286)
Q Consensus 64 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~l~-~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~ 141 (286)
..++.++-++..|..+.-.-+.+++.++.|.+.++. +..+. +.-++ -.++|+.|++++|+- |.+..+..+..+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~r--IT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPR--ITDGGLACLLKLKN 177 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-HHHhcccccchheeeccCCCe--echhHHHHHHHhhh
Confidence 355667777777766654445677777777777763 33322 12222 346788888887752 22444446777888
Q ss_pred CcEEeCCCCC
Q 023142 142 LRVLDFKKVK 151 (286)
Q Consensus 142 L~~L~l~~n~ 151 (286)
|+.|.+.+-+
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 8877776543
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.34 E-value=0.39 Score=45.57 Aligned_cols=64 Identities=23% Similarity=0.230 Sum_probs=43.6
Q ss_pred cCCCCcCEEeccCCCCCCCCCC----CCCCCCCeEeccCC--cCcccCCccccCCCCccEEEeecCcCCC
Q 023142 39 ATEDQFDTIDLSDNEIVKLENM----PHLNRLGTLIINNN--RITRINPNIGEFLPKLHTLVLTNNRLVN 102 (286)
Q Consensus 39 ~~l~~L~~L~Ls~N~l~~i~~~----~~l~~L~~L~Ls~N--~l~~l~~~~~~~l~~L~~L~Ls~N~i~~ 102 (286)
-+.+.+..+.|++|++..+..+ ...|+|..|+|++| .+.....-.--+...|++|.+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3467778888899988877643 34678889999998 4544322111134468889999998764
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.21 E-value=0.57 Score=43.08 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=92.9
Q ss_pred CCCCccEEEeeCC-CCcc--ccccccCCCCcCEEeccCCC-CCCCC--CC-CCCCCCCeEeccCCcCccc--CCccccCC
Q 023142 17 NAIKERELDLRGN-KIAV--IENLGATEDQFDTIDLSDNE-IVKLE--NM-PHLNRLGTLIINNNRITRI--NPNIGEFL 87 (286)
Q Consensus 17 ~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i~--~~-~~l~~L~~L~Ls~N~l~~l--~~~~~~~l 87 (286)
++..|+.|..+++ .++. +.....+..+|++|-++.++ |+... .+ .+++.|+.+++.......- -.....++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 4678999999885 4443 23455678999999999886 44332 22 5788999999988854321 12333588
Q ss_pred CCccEEEeecCcC-CCCCCCcc----CCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 88 PKLHTLVLTNNRL-VNLVEIDP----LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 88 ~~L~~L~Ls~N~i-~~~~~~~~----l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
+.|+.|.++++.. +.. .+.. -..+..|..+.|.+.+... +..+..+..+++|+.+++.++..-..
T Consensus 372 ~~lr~lslshce~itD~-gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDE-GIRHLSSSSCSLEGLEVLELDNCPLIT--DATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred chhccCChhhhhhhhhh-hhhhhhhccccccccceeeecCCCCch--HHHHHHHhhCcccceeeeechhhhhh
Confidence 9999999998853 332 1112 2356779999999988763 33333678889999999988765433
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=83.14 E-value=1.1 Score=41.23 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=79.4
Q ss_pred CccEEEeeCC-CCcccc--ccccCCCCcCEEeccCCCC-CCCC--C-CCCCCCCCeEeccCCc-CcccCC-ccccCCCCc
Q 023142 20 KERELDLRGN-KIAVIE--NLGATEDQFDTIDLSDNEI-VKLE--N-MPHLNRLGTLIINNNR-ITRINP-NIGEFLPKL 90 (286)
Q Consensus 20 ~L~~L~Ls~n-~l~~l~--~~~~~l~~L~~L~Ls~N~l-~~i~--~-~~~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L 90 (286)
.+..+++.++ .++... ..-..+..|++|+.++..- +..+ . ..++.+|+.|-++.++ ++...- ....+++.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 3445555453 444332 3334577888988887643 2222 2 3567899999998884 554321 223577889
Q ss_pred cEEEeecCcCCCCCCCc-cCCCCCCccEEEecCCcCCCCCCchHH--HHhhCCCCcEEeCCCCChH
Q 023142 91 HTLVLTNNRLVNLVEID-PLTSLPKLQFLSLLDNSITKKPNYRLY--VIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 91 ~~L~Ls~N~i~~~~~~~-~l~~l~~L~~L~L~~N~l~~ip~~~~~--~l~~l~~L~~L~l~~n~~~ 153 (286)
+.+++..+.......+. .-.+|+.|+.+.++++........+.. .-..+..|..+-+.+.+..
T Consensus 349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 99998887543222211 233688899999987654432211110 2345667888888888754
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.69 E-value=0.8 Score=23.83 Aligned_cols=14 Identities=50% Similarity=0.586 Sum_probs=6.4
Q ss_pred CCCCeEeccCCcCc
Q 023142 64 NRLGTLIINNNRIT 77 (286)
Q Consensus 64 ~~L~~L~Ls~N~l~ 77 (286)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555554
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.05 E-value=0.21 Score=41.49 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=62.6
Q ss_pred eCCCCccccccccCCCCcCEEeccCCCCCCC--CCCCCCCCCCeEeccCCc-CcccC-CccccCCCCccEEEeecC-cCC
Q 023142 27 RGNKIAVIENLGATEDQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNNR-ITRIN-PNIGEFLPKLHTLVLTNN-RLV 101 (286)
Q Consensus 27 s~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~Ls~N~-l~~l~-~~~~~~l~~L~~L~Ls~N-~i~ 101 (286)
.+|..-++|.....-..++.+|-++..|... ..+.+++.++.|.+.++. +.+-- ..+....++|+.|++++| +|+
T Consensus 86 d~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 86 DYNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred cccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 3443334443322233577888888888754 478888888888888774 22210 112224579999999988 587
Q ss_pred CCCCCccCCCCCCccEEEecCCc
Q 023142 102 NLVEIDPLTSLPKLQFLSLLDNS 124 (286)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~L~~N~ 124 (286)
+-. +..+..+++|+.|.+.+=+
T Consensus 166 ~~G-L~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 166 DGG-LACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hhH-HHHHHHhhhhHHHHhcCch
Confidence 754 3567788899988876543
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=70.22 E-value=3.9 Score=22.23 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=6.2
Q ss_pred CcCEEeccCCCCC
Q 023142 43 QFDTIDLSDNEIV 55 (286)
Q Consensus 43 ~L~~L~Ls~N~l~ 55 (286)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3445555555443
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=63.21 E-value=5 Score=45.41 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=15.1
Q ss_pred ccCCcCcccCCccccCCCCccEEEeecCcCC
Q 023142 71 INNNRITRINPNIGEFLPKLHTLVLTNNRLV 101 (286)
Q Consensus 71 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~ 101 (286)
|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4444455454444444445555555554443
No 92
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=56.42 E-value=9.3 Score=20.61 Aligned_cols=20 Identities=45% Similarity=0.549 Sum_probs=16.6
Q ss_pred CchHHHHhhCCCCcEEeCCC
Q 023142 130 NYRLYVIHKLKSLRVLDFKK 149 (286)
Q Consensus 130 ~~~~~~l~~l~~L~~L~l~~ 149 (286)
.++...+..+|+|+.||...
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred cHHHHHHHHCCccceecccc
Confidence 46677899999999999764
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.84 E-value=7.2 Score=44.25 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.7
Q ss_pred EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
||++|+|+.++. ..|..+++|+.|+|++|++..-..
T Consensus 1 DLSnN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEE-GICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccCh-HHhccCCCceEEEeeCCccccccc
Confidence 588999999998 899999999999999999985433
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=32.83 E-value=28 Score=18.19 Aligned_cols=11 Identities=36% Similarity=0.446 Sum_probs=5.0
Q ss_pred CCccEEEecCC
Q 023142 113 PKLQFLSLLDN 123 (286)
Q Consensus 113 ~~L~~L~L~~N 123 (286)
++|+.|+|+++
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=29.52 E-value=31 Score=32.83 Aligned_cols=37 Identities=38% Similarity=0.452 Sum_probs=19.0
Q ss_pred ccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCC
Q 023142 90 LHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT 126 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~ 126 (286)
+..|.|.+|.+..-.. ...+.....|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5556666665554321 012344555666666666655
Done!