Query 023142
Match_columns 286
No_of_seqs 454 out of 2305
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 17:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a9n_A U2A', U2A'; complex (nu 99.9 9.5E-26 3.2E-30 183.5 12.1 172 1-172 1-172 (176)
2 3rfs_A Internalin B, repeat mo 99.9 7.1E-24 2.4E-28 184.1 13.6 201 4-246 48-250 (272)
3 4fcg_A Uncharacterized protein 99.9 8.5E-25 2.9E-29 195.2 2.7 198 15-249 100-308 (328)
4 2o6s_A Variable lymphocyte rec 99.9 1E-20 3.6E-25 157.4 15.8 181 22-245 10-192 (208)
5 1ozn_A Reticulon 4 receptor; N 99.9 8.5E-23 2.9E-27 178.1 2.6 201 18-230 31-238 (285)
6 2o6q_A Variable lymphocyte rec 99.8 2.3E-22 7.8E-27 174.4 4.3 131 19-153 37-170 (270)
7 2z80_A TOLL-like receptor 2, v 99.8 1.7E-22 5.7E-27 181.6 3.0 216 14-239 71-297 (353)
8 4fcg_A Uncharacterized protein 99.8 5.2E-23 1.8E-27 183.6 -0.6 198 18-254 80-289 (328)
9 1h6u_A Internalin H; cell adhe 99.8 1.3E-22 4.5E-27 179.4 -0.2 179 8-230 52-230 (308)
10 3zyj_A Leucine-rich repeat-con 99.8 6.9E-22 2.4E-26 182.9 4.5 188 13-238 82-274 (440)
11 3zyi_A Leucine-rich repeat-con 99.8 3.2E-22 1.1E-26 185.7 1.7 205 19-239 75-286 (452)
12 3rgz_A Protein brassinosteroid 99.8 1.7E-22 5.8E-27 199.3 -0.4 240 12-259 411-721 (768)
13 3m19_A Variable lymphocyte rec 99.8 6.4E-20 2.2E-24 157.2 14.1 135 14-152 54-191 (251)
14 1ozn_A Reticulon 4 receptor; N 99.8 5.1E-22 1.7E-26 173.2 0.9 199 22-236 14-218 (285)
15 2o6q_A Variable lymphocyte rec 99.8 7.4E-20 2.5E-24 158.5 14.2 170 4-207 44-218 (270)
16 2ca6_A RAN GTPase-activating p 99.8 1.6E-23 5.5E-28 190.5 -10.2 206 15-230 56-316 (386)
17 2z66_A Variable lymphocyte rec 99.8 1.7E-22 5.7E-27 178.0 -3.5 211 19-241 28-246 (306)
18 2id5_A Lingo-1, leucine rich r 99.8 1.5E-22 5.1E-27 188.9 -4.5 138 13-154 50-190 (477)
19 2v9t_B SLIT homolog 2 protein 99.8 1.1E-19 3.7E-24 153.0 13.3 131 19-153 32-165 (220)
20 2z62_A TOLL-like receptor 4, v 99.8 8.1E-22 2.8E-26 171.2 0.2 206 19-235 28-241 (276)
21 2z62_A TOLL-like receptor 4, v 99.8 1.4E-21 4.7E-26 169.7 1.5 202 23-239 11-220 (276)
22 3rfs_A Internalin B, repeat mo 99.8 1.2E-19 4.1E-24 157.4 13.6 146 3-152 69-217 (272)
23 1p9a_G Platelet glycoprotein I 99.8 8.8E-20 3E-24 160.0 12.8 135 14-153 50-185 (290)
24 3zyi_A Leucine-rich repeat-con 99.8 1.9E-21 6.5E-26 180.5 2.1 209 20-243 55-267 (452)
25 2ell_A Acidic leucine-rich nuc 99.8 2.4E-20 8.1E-25 150.1 8.2 140 16-155 21-162 (168)
26 2xwt_C Thyrotropin receptor; s 99.8 1.1E-21 3.7E-26 166.9 0.3 181 18-237 30-223 (239)
27 3m19_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 155.9 12.6 156 19-208 35-193 (251)
28 1ogq_A PGIP-2, polygalacturona 99.8 6E-23 2E-27 182.0 -8.4 210 12-237 69-287 (313)
29 3zyj_A Leucine-rich repeat-con 99.8 2.2E-21 7.4E-26 179.5 1.1 187 19-242 64-255 (440)
30 1xku_A Decorin; proteoglycan, 99.8 1.5E-21 5E-26 173.8 -0.1 127 19-152 52-183 (330)
31 1ogq_A PGIP-2, polygalacturona 99.8 1.4E-22 4.9E-27 179.5 -7.2 226 19-259 50-285 (313)
32 2ft3_A Biglycan; proteoglycan, 99.8 7.2E-21 2.5E-25 169.5 3.5 127 19-153 54-185 (332)
33 1p9a_G Platelet glycoprotein I 99.8 2.1E-19 7E-24 157.6 12.6 176 19-207 31-208 (290)
34 3e6j_A Variable lymphocyte rec 99.8 3.4E-19 1.2E-23 150.9 13.4 131 18-153 39-172 (229)
35 3o6n_A APL1; leucine-rich repe 99.8 8.6E-22 2.9E-26 179.2 -3.0 132 18-153 44-178 (390)
36 3oja_B Anopheles plasmodium-re 99.8 9.9E-22 3.4E-26 188.7 -2.9 47 190-238 250-297 (597)
37 3rgz_A Protein brassinosteroid 99.8 1.7E-21 5.9E-26 192.1 -1.6 215 12-237 435-723 (768)
38 4fmz_A Internalin; leucine ric 99.8 5.6E-21 1.9E-25 170.9 1.7 205 4-229 51-255 (347)
39 2z80_A TOLL-like receptor 2, v 99.8 7.4E-22 2.5E-26 177.4 -4.2 147 4-154 83-236 (353)
40 2v70_A SLIT-2, SLIT homolog 2 99.8 4.1E-19 1.4E-23 149.5 12.6 145 4-153 18-166 (220)
41 3oja_B Anopheles plasmodium-re 99.8 6E-21 2E-25 183.2 1.1 206 16-230 72-337 (597)
42 2id5_A Lingo-1, leucine rich r 99.8 2.2E-21 7.5E-26 180.9 -1.9 221 4-238 63-315 (477)
43 3t6q_A CD180 antigen; protein- 99.8 4.7E-21 1.6E-25 183.6 0.0 137 13-153 51-192 (606)
44 1h6u_A Internalin H; cell adhe 99.8 1.3E-21 4.5E-26 172.9 -3.8 177 13-235 35-211 (308)
45 3o53_A Protein LRIM1, AGAP0063 99.8 5.8E-20 2E-24 162.9 6.4 210 14-239 53-284 (317)
46 1xku_A Decorin; proteoglycan, 99.8 8.3E-21 2.8E-25 168.9 0.9 218 4-240 59-284 (330)
47 4fmz_A Internalin; leucine ric 99.8 1.3E-20 4.5E-25 168.5 2.2 180 8-230 144-324 (347)
48 3o6n_A APL1; leucine-rich repe 99.8 2.2E-20 7.6E-25 169.9 3.5 91 135-235 243-334 (390)
49 4eco_A Uncharacterized protein 99.8 3.9E-21 1.3E-25 185.9 -1.9 226 15-249 326-573 (636)
50 1h6t_A Internalin B; cell adhe 99.8 8.8E-22 3E-26 172.8 -6.1 177 10-230 37-213 (291)
51 2je0_A Acidic leucine-rich nuc 99.8 2.1E-19 7.3E-24 141.6 8.2 133 17-149 15-149 (149)
52 1o6v_A Internalin A; bacterial 99.8 1.8E-20 6.2E-25 174.5 2.0 142 5-154 54-213 (466)
53 3oja_A Leucine-rich immune mol 99.8 1.8E-21 6.2E-26 182.6 -5.0 211 17-248 32-243 (487)
54 1wwl_A Monocyte differentiatio 99.8 1.3E-21 4.5E-26 173.1 -5.9 183 41-236 94-291 (312)
55 4eco_A Uncharacterized protein 99.8 5.6E-21 1.9E-25 184.8 -2.3 212 14-239 348-586 (636)
56 4ecn_A Leucine-rich repeat pro 99.8 6.9E-21 2.4E-25 189.3 -2.0 221 8-239 584-826 (876)
57 2z66_A Variable lymphocyte rec 99.8 4.5E-21 1.5E-25 168.8 -3.1 199 21-236 9-216 (306)
58 4ezg_A Putative uncharacterize 99.8 8.8E-19 3E-23 144.7 10.4 140 5-153 52-194 (197)
59 3v47_A TOLL-like receptor 5B a 99.8 2.5E-20 8.6E-25 172.5 1.2 119 12-130 47-171 (455)
60 4glp_A Monocyte differentiatio 99.8 2E-21 6.9E-26 171.7 -6.0 183 19-230 91-285 (310)
61 2ft3_A Biglycan; proteoglycan, 99.8 1E-20 3.4E-25 168.6 -2.1 216 4-239 61-284 (332)
62 3o53_A Protein LRIM1, AGAP0063 99.8 1.4E-21 4.9E-26 173.2 -7.5 213 16-249 31-244 (317)
63 1o6v_A Internalin A; bacterial 99.8 2.2E-20 7.5E-25 174.0 0.1 195 14-230 194-388 (466)
64 3vq2_A TLR4, TOLL-like recepto 99.8 6.6E-21 2.2E-25 182.6 -3.8 191 14-241 345-543 (606)
65 4ezg_A Putative uncharacterize 99.8 4.3E-19 1.5E-23 146.6 7.6 155 15-208 40-195 (197)
66 4ecn_A Leucine-rich repeat pro 99.8 4.1E-20 1.4E-24 183.8 1.3 226 15-249 544-813 (876)
67 2v9t_B SLIT homolog 2 protein 99.8 2.5E-18 8.5E-23 144.7 11.4 152 21-208 13-166 (220)
68 3t6q_A CD180 antigen; protein- 99.8 3.8E-20 1.3E-24 177.3 0.2 223 15-249 274-507 (606)
69 2wfh_A SLIT homolog 2 protein 99.8 4E-18 1.4E-22 140.6 12.3 126 22-153 13-139 (193)
70 4g8a_A TOLL-like receptor 4; l 99.8 3E-18 1E-22 164.0 13.3 132 19-155 52-188 (635)
71 3e6j_A Variable lymphocyte rec 99.8 8E-18 2.8E-22 142.4 14.2 152 20-208 20-173 (229)
72 2xot_A Amphoterin-induced prot 99.8 3.3E-18 1.1E-22 154.3 11.6 136 19-155 39-178 (361)
73 3bz5_A Internalin-J, INLJ; leu 99.8 5.3E-20 1.8E-24 171.3 -0.3 193 8-230 53-246 (457)
74 3oja_A Leucine-rich immune mol 99.8 4.3E-19 1.5E-23 166.4 5.8 216 4-235 41-280 (487)
75 1ziw_A TOLL-like receptor 3; i 99.8 4.5E-20 1.5E-24 179.2 -1.4 221 15-240 45-294 (680)
76 1wwl_A Monocyte differentiatio 99.7 8.5E-21 2.9E-25 167.9 -6.4 205 17-230 93-309 (312)
77 3bz5_A Internalin-J, INLJ; leu 99.7 1.3E-19 4.6E-24 168.6 1.2 193 12-235 35-228 (457)
78 2v70_A SLIT-2, SLIT homolog 2 99.7 3.8E-18 1.3E-22 143.5 10.0 151 21-207 13-166 (220)
79 1w8a_A SLIT protein; signaling 99.7 7.3E-18 2.5E-22 138.8 11.1 127 21-153 10-139 (192)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.2E-19 4.2E-24 172.7 0.5 87 14-101 71-159 (562)
81 1xeu_A Internalin C; cellular 99.7 3.6E-18 1.2E-22 147.6 8.9 135 9-155 31-165 (263)
82 2o6r_A Variable lymphocyte rec 99.7 2.8E-17 9.6E-22 133.2 13.3 130 20-155 8-139 (177)
83 1h6t_A Internalin B; cell adhe 99.7 9.7E-18 3.3E-22 147.0 11.2 141 3-154 52-192 (291)
84 1jl5_A Outer protein YOPM; leu 99.7 4.3E-19 1.5E-23 165.1 2.6 213 4-242 180-422 (454)
85 1m9s_A Internalin B; cell inva 99.7 4E-18 1.4E-22 163.7 9.3 174 13-230 37-210 (605)
86 2xot_A Amphoterin-induced prot 99.7 7.2E-18 2.4E-22 152.1 10.3 146 4-153 46-202 (361)
87 2xwt_C Thyrotropin receptor; s 99.7 8.4E-18 2.9E-22 142.7 9.5 135 14-155 50-195 (239)
88 1xeu_A Internalin C; cellular 99.7 5.1E-18 1.8E-22 146.6 8.2 136 5-152 49-184 (263)
89 3j0a_A TOLL-like receptor 5; m 99.7 3.2E-18 1.1E-22 170.4 6.9 215 14-238 285-523 (844)
90 3cvr_A Invasion plasmid antige 99.7 2.7E-19 9.2E-24 170.5 -1.6 168 19-215 80-252 (571)
91 2z81_A CD282 antigen, TOLL-lik 99.7 2.8E-19 9.6E-24 169.2 -1.9 179 19-230 26-209 (549)
92 2ca6_A RAN GTPase-activating p 99.7 3.5E-20 1.2E-24 168.4 -8.0 219 4-230 16-287 (386)
93 2o6s_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 133.0 13.8 131 18-152 27-160 (208)
94 3g06_A SSPH2 (leucine-rich rep 99.7 8.3E-19 2.8E-23 168.8 -0.5 37 193-229 260-296 (622)
95 2wfh_A SLIT homolog 2 protein 99.7 9.4E-17 3.2E-21 132.3 11.6 123 4-128 17-141 (193)
96 4ay9_X Follicle-stimulating ho 99.7 9E-19 3.1E-23 157.3 -1.0 202 18-236 29-241 (350)
97 4g8a_A TOLL-like receptor 4; l 99.7 7.9E-17 2.7E-21 154.1 11.9 149 3-151 58-212 (635)
98 4b8c_D Glucose-repressible alc 99.7 3.7E-17 1.3E-21 160.2 9.8 182 30-229 212-403 (727)
99 3v47_A TOLL-like receptor 5B a 99.7 1.3E-16 4.4E-21 147.4 12.5 132 19-154 275-409 (455)
100 2z7x_B TOLL-like receptor 1, v 99.7 8.7E-19 3E-23 165.0 -2.4 184 16-237 273-462 (520)
101 3j0a_A TOLL-like receptor 5; m 99.7 1.6E-17 5.4E-22 165.4 6.4 217 19-249 266-511 (844)
102 3vq2_A TLR4, TOLL-like recepto 99.7 1.9E-16 6.5E-21 151.6 13.1 130 19-153 32-166 (606)
103 1m9s_A Internalin B; cell inva 99.7 7.3E-17 2.5E-21 154.9 10.1 142 3-155 49-190 (605)
104 1ziw_A TOLL-like receptor 3; i 99.7 3E-16 1E-20 152.3 13.7 141 12-156 447-600 (680)
105 4glp_A Monocyte differentiatio 99.7 2.4E-17 8.2E-22 145.4 5.0 177 16-230 114-307 (310)
106 3g06_A SSPH2 (leucine-rich rep 99.7 3.2E-18 1.1E-22 164.8 -0.7 88 5-103 69-156 (622)
107 1dce_A Protein (RAB geranylger 99.7 2E-16 6.7E-21 150.9 11.6 124 20-147 442-567 (567)
108 1w8a_A SLIT protein; signaling 99.7 4.1E-16 1.4E-20 128.3 10.9 123 4-128 15-141 (192)
109 2z63_A TOLL-like receptor 4, v 99.7 5.8E-16 2E-20 146.9 13.3 131 19-154 28-163 (570)
110 2o6r_A Variable lymphocyte rec 99.7 8.6E-16 2.9E-20 124.4 12.0 111 18-129 27-140 (177)
111 2z81_A CD282 antigen, TOLL-lik 99.7 6.5E-16 2.2E-20 146.1 13.0 137 12-154 354-511 (549)
112 2z7x_B TOLL-like receptor 1, v 99.6 3E-16 1E-20 147.6 10.1 145 4-155 331-483 (520)
113 3g39_A Variable lymphocyte rec 99.6 1.6E-15 5.4E-20 122.4 11.6 108 20-130 10-119 (170)
114 2r9u_A Variable lymphocyte rec 99.6 2.2E-15 7.5E-20 122.1 12.1 107 21-130 14-122 (174)
115 2z63_A TOLL-like receptor 4, v 99.6 5.4E-16 1.8E-20 147.1 9.7 148 4-154 35-191 (570)
116 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1E-15 3.6E-20 145.5 11.5 135 12-154 370-511 (562)
117 4ay9_X Follicle-stimulating ho 99.6 1.7E-17 5.7E-22 149.0 -1.0 210 15-240 6-223 (350)
118 4b8c_D Glucose-repressible alc 99.6 1.7E-16 5.7E-21 155.6 5.3 185 19-242 173-365 (727)
119 1ds9_A Outer arm dynein; leuci 99.6 1.4E-18 4.7E-23 143.7 -9.6 130 20-155 24-155 (198)
120 1a9n_A U2A', U2A'; complex (nu 99.6 7.4E-16 2.5E-20 124.8 6.4 142 38-211 15-157 (176)
121 3cvr_A Invasion plasmid antige 99.6 5E-15 1.7E-19 141.0 12.7 118 20-155 121-245 (571)
122 3g39_A Variable lymphocyte rec 99.6 7.7E-15 2.6E-19 118.3 11.4 105 43-153 10-115 (170)
123 2ell_A Acidic leucine-rich nuc 99.6 7.1E-16 2.4E-20 123.7 5.2 126 4-130 31-164 (168)
124 2r9u_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 118.1 11.4 104 44-153 14-118 (174)
125 3goz_A Leucine-rich repeat-con 99.6 4.5E-17 1.5E-21 146.8 -3.2 206 18-229 21-265 (362)
126 3goz_A Leucine-rich repeat-con 99.6 6.4E-18 2.2E-22 152.4 -9.3 209 14-230 45-297 (362)
127 1jl5_A Outer protein YOPM; leu 99.6 2.2E-14 7.4E-19 133.3 13.6 116 5-130 139-254 (454)
128 1dce_A Protein (RAB geranylger 99.5 1.8E-14 6.1E-19 137.4 8.2 118 3-120 447-567 (567)
129 2je0_A Acidic leucine-rich nuc 99.5 1.5E-14 5E-19 113.6 6.3 108 41-155 16-128 (149)
130 2ast_B S-phase kinase-associat 99.5 1.2E-16 4E-21 142.0 -7.0 126 19-150 70-205 (336)
131 2ast_B S-phase kinase-associat 99.5 5.8E-16 2E-20 137.5 -3.1 128 20-154 48-183 (336)
132 3sb4_A Hypothetical leucine ri 99.5 1E-15 3.5E-20 136.1 -1.6 128 18-150 48-260 (329)
133 1ds9_A Outer arm dynein; leuci 99.5 3.8E-16 1.3E-20 128.9 -4.5 135 14-151 43-185 (198)
134 2ifg_A High affinity nerve gro 99.5 1.8E-13 6.2E-18 122.2 10.4 106 22-130 11-120 (347)
135 1z7x_W Ribonuclease inhibitor; 99.5 7.1E-16 2.4E-20 142.6 -6.1 189 15-230 166-411 (461)
136 1z7x_W Ribonuclease inhibitor; 99.4 1.2E-15 4.3E-20 141.0 -5.2 113 14-126 51-183 (461)
137 2ifg_A High affinity nerve gro 99.4 5.3E-13 1.8E-17 119.1 9.2 104 45-153 11-116 (347)
138 3sb4_A Hypothetical leucine ri 99.4 1.7E-12 5.9E-17 115.2 11.7 87 63-155 225-312 (329)
139 3un9_A NLR family member X1; l 99.1 3.6E-12 1.2E-16 115.3 -0.8 137 19-155 101-254 (372)
140 3un9_A NLR family member X1; l 99.1 1.4E-12 4.8E-17 118.0 -3.7 137 19-155 72-226 (372)
141 4fdw_A Leucine rich hypothetic 99.1 9.8E-10 3.3E-14 100.3 11.6 129 13-149 174-309 (401)
142 3ogk_B Coronatine-insensitive 99.0 1.1E-10 3.7E-15 111.1 2.6 133 17-154 162-307 (592)
143 4fdw_A Leucine rich hypothetic 99.0 1.6E-09 5.4E-14 98.9 9.2 121 18-147 202-330 (401)
144 3ogk_B Coronatine-insensitive 98.9 1.1E-11 3.6E-16 118.1 -6.3 208 15-231 289-527 (592)
145 2p1m_B Transport inhibitor res 98.9 2.3E-12 7.7E-17 122.7 -13.2 212 15-227 62-324 (594)
146 2p1m_B Transport inhibitor res 98.9 6.2E-10 2.1E-14 105.8 3.5 128 22-151 46-195 (594)
147 3rw6_A Nuclear RNA export fact 98.8 4.9E-09 1.7E-13 90.2 4.9 103 47-150 148-261 (267)
148 1io0_A Tropomodulin; LRR prote 98.6 1.5E-08 5.1E-13 82.4 2.9 121 35-155 29-166 (185)
149 2ra8_A Uncharacterized protein 98.6 2.6E-08 8.7E-13 89.6 4.1 136 16-155 136-294 (362)
150 1io0_A Tropomodulin; LRR prote 98.5 7E-09 2.4E-13 84.4 -1.0 112 15-126 32-164 (185)
151 4h09_A Hypothetical leucine ri 98.4 1.1E-06 3.7E-11 79.0 11.0 130 13-150 211-343 (379)
152 2ra8_A Uncharacterized protein 98.4 3.3E-08 1.1E-12 88.9 0.5 138 16-155 169-322 (362)
153 4gt6_A Cell surface protein; l 98.4 6.5E-07 2.2E-11 81.0 9.1 108 36-151 259-368 (394)
154 4h09_A Hypothetical leucine ri 98.4 7.7E-07 2.6E-11 79.9 9.5 123 12-142 233-358 (379)
155 3rw6_A Nuclear RNA export fact 98.4 1.9E-07 6.5E-12 80.2 3.8 104 15-119 137-257 (267)
156 4fs7_A Uncharacterized protein 98.3 1.9E-06 6.5E-11 77.9 9.2 128 15-150 249-376 (394)
157 4gt6_A Cell surface protein; l 98.2 1.1E-05 3.7E-10 72.9 11.9 104 15-123 261-367 (394)
158 4fs7_A Uncharacterized protein 98.2 3.5E-06 1.2E-10 76.2 8.0 123 12-145 269-393 (394)
159 3e4g_A ATP synthase subunit S, 98.1 7.3E-07 2.5E-11 71.6 1.6 82 42-124 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 6.3E-06 2.2E-10 66.1 3.3 86 17-102 59-154 (176)
161 3rfe_A Platelet glycoprotein I 97.6 7.3E-05 2.5E-09 56.9 5.6 55 68-126 12-68 (130)
162 3rfe_A Platelet glycoprotein I 97.6 0.0001 3.6E-09 56.0 6.2 54 46-101 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00053 1.8E-08 55.9 5.5 120 36-155 35-172 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00014 4.8E-09 59.3 0.4 109 17-125 39-169 (197)
165 2lz0_A Uncharacterized protein 89.2 0.66 2.3E-05 33.0 5.2 46 75-122 7-52 (100)
166 2lz0_A Uncharacterized protein 85.3 2.8 9.7E-05 29.6 6.6 47 51-98 5-53 (100)
No 1
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.93 E-value=9.5e-26 Score=183.53 Aligned_cols=172 Identities=56% Similarity=0.848 Sum_probs=150.4
Q ss_pred CcccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC
Q 023142 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN 80 (286)
Q Consensus 1 m~~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~ 80 (286)
|+++|.+.|.+.+.+.++++|+.|++++|+++.+|......++|++|++++|.|+.++.|..+++|++|++++|+|+.++
T Consensus 1 m~~lt~~~i~~~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp -CCCCHHHHHTSCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred CccccHHHHHHHHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence 89999999999999999999999999999999998755545599999999999999989999999999999999999999
Q ss_pred CccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH
Q 023142 81 PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS 160 (286)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 160 (286)
+..|..+++|++|++++|.|+.++.+..+..+++|+.|++++|+++.+|.++...+..+++|++|+++.|...++..+..
T Consensus 81 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~ 160 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEK 160 (176)
T ss_dssp SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHHHHHHH
T ss_pred cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHHHHHHH
Confidence 88878999999999999999998765578899999999999999999998766679999999999999999999998888
Q ss_pred HhhcchhHHHHH
Q 023142 161 LFASEEMEEEAK 172 (286)
Q Consensus 161 ~~~~~~~~~~~~ 172 (286)
+|.+.....+..
T Consensus 161 ~~~~~~~~~l~~ 172 (176)
T 1a9n_A 161 MFKGKRGAQLAK 172 (176)
T ss_dssp TTC---------
T ss_pred HHhccchHHHHH
Confidence 888777555443
No 2
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=7.1e-24 Score=184.14 Aligned_cols=201 Identities=18% Similarity=0.150 Sum_probs=159.4
Q ss_pred cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC
Q 023142 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP 81 (286)
Q Consensus 4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~ 81 (286)
+..+.+...+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++ .|..+++|++|++++|+++.+++
T Consensus 48 l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 48 ANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp CTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred eCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 44455666777888888999999988888775 4566888999999999888775 37888889999999998888888
Q ss_pred ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHH
Q 023142 82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASL 161 (286)
Q Consensus 82 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 161 (286)
..+..+++|++|++++|.|+.+++ ..|..+++|+.|++++|+++.++.. .+..+++|++|++++|.+..+
T Consensus 127 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~------ 196 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLKDLRLYQNQLKSV------ 196 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCC------
T ss_pred HHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHH---HhcCCccCCEEECCCCcCCcc------
Confidence 777788889999999998888876 5678888899999999988877764 467888899999988875421
Q ss_pred hhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142 162 FASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIP 241 (286)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~ 241 (286)
.+..+ ..+.+|+.+++++|.+. +.|+.|+.+++..|.+. |.||..++..
T Consensus 197 ------------------~~~~~------~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~-g~ip~~~~~~ 245 (272)
T 3rfs_A 197 ------------------PDGVF------DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHS-GVVRNSAGSV 245 (272)
T ss_dssp ------------------CTTTT------TTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTG-GGBBCTTSCB
T ss_pred ------------------CHHHH------hCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCC-CcccCccccc
Confidence 11111 24678999999999765 56889999999999995 8999998877
Q ss_pred CCCCC
Q 023142 242 DYDSG 246 (286)
Q Consensus 242 ~~~~~ 246 (286)
.....
T Consensus 246 ~~~~~ 250 (272)
T 3rfs_A 246 APDSA 250 (272)
T ss_dssp CGGGS
T ss_pred CCCCC
Confidence 66443
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.5e-25 Score=195.22 Aligned_cols=198 Identities=17% Similarity=0.161 Sum_probs=116.6
Q ss_pred cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCc-ccCCcc--------c
Q 023142 15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRIT-RINPNI--------G 84 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~-~l~~~~--------~ 84 (286)
+.++++|++|++++|.++.+|..+..+++|++|+|++|.++.+| .+..+++|++|++++|++. .+|... +
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 44455555555555555555554455555555555555555554 4455555555555554332 232222 1
Q ss_pred cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhc
Q 023142 85 EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS 164 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 164 (286)
.++++|++|++++|.|+.+|. .+..+++|++|++++|.++.+|. .+..+++|++|++++|.+.
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls~n~~~----------- 242 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPA--SIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLRGCTAL----------- 242 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCG--GGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECTTCTTC-----------
T ss_pred ccCCCCCEEECcCCCcCcchH--hhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECcCCcch-----------
Confidence 125555555555555555443 35555555555555555555544 3455555555555555321
Q ss_pred chhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCC
Q 023142 165 EEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY 243 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~ 243 (286)
...|..+ +.+.+|+.+++++|.+. .+|..++++++|+.|++++|.+ .|.+|..+.....
T Consensus 243 -------------~~~p~~~------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 243 -------------RNYPPIF------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPA 302 (328)
T ss_dssp -------------CBCCCCT------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCT
T ss_pred -------------hhhHHHh------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccC
Confidence 1112111 35778999999998776 8898999999999999999998 4899999888776
Q ss_pred CCCCcc
Q 023142 244 DSGSKD 249 (286)
Q Consensus 244 ~~~~~~ 249 (286)
...++.
T Consensus 303 L~~l~l 308 (328)
T 4fcg_A 303 NCIILV 308 (328)
T ss_dssp TCEEEC
T ss_pred ceEEeC
Confidence 554433
No 4
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1e-20 Score=157.44 Aligned_cols=181 Identities=17% Similarity=0.156 Sum_probs=110.3
Q ss_pred cEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (286)
Q Consensus 22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 99 (286)
+.++++++.++.+|..+ .++|++|++++|.++.++ .|..+++|++|++++|+++.+++..|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 45566666666666433 345666666666666554 25566666666666666666665555566666666666666
Q ss_pred CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccC
Q 023142 100 LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTL 179 (286)
Q Consensus 100 i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (286)
|+.+++ ..|..+++|++|++++|.++.++.. .+..+++|++|++++|.+..+
T Consensus 88 l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~------------------------ 139 (208)
T 2o6s_A 88 LQSLPN-GVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSV------------------------ 139 (208)
T ss_dssp CCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCC------------------------
T ss_pred CCccCH-hHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCcccee------------------------
Confidence 666654 4456666666666666666655543 345666666666666653211
Q ss_pred CCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCC
Q 023142 180 MPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS 245 (286)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~ 245 (286)
.+..+ ..+.+|+.+++++|.+. +.+++|+.|++..|.+. |.||..+.....+.
T Consensus 140 ~~~~~------~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~-g~ip~~~~~l~~~~ 192 (208)
T 2o6s_A 140 PDGVF------DRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHS-GVVRNSAGSVAPDS 192 (208)
T ss_dssp CTTTT------TTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCT-TTBBCTTSSBCTTC
T ss_pred CHHHh------ccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCC-ceeeccCccccCCc
Confidence 00000 12445666666666433 45678999999999995 89999888766533
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.85 E-value=8.5e-23 Score=178.15 Aligned_cols=201 Identities=19% Similarity=0.192 Sum_probs=111.8
Q ss_pred CCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCc-CcccCCccccCCCCccEE
Q 023142 18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNR-ITRINPNIGEFLPKLHTL 93 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L 93 (286)
.++|+.|++++|.++.++ ..+..+++|++|++++|.++.+ + .|..+++|++|++++|+ ++.+++..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 345666666666666555 3455566666666666666655 2 45666666666666665 666655555566666666
Q ss_pred EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK 173 (286)
Q Consensus 94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 173 (286)
++++|.++.+++ ..+.++++|++|++++|.++.++.. .+..+++|++|++++|.+..++. ..|.... .
T Consensus 111 ~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~------~ 178 (285)
T 1ozn_A 111 HLDRCGLQELGP-GLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPE--RAFRGLH------S 178 (285)
T ss_dssp ECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECT--TTTTTCT------T
T ss_pred ECCCCcCCEECH-hHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCH--HHhcCcc------c
Confidence 666666666554 4556666666666666666655542 35556666666666665442210 0011110 0
Q ss_pred hhcccCCCCCCCCC--ChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHh
Q 023142 174 ESMKTLMPVEVPNV--SEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 174 ~~~~~~~~~~~~~~--~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~ 230 (286)
+....+....+..+ .....+.+|+.+++++|+++.++ ..+..+++|+.|++++|.+.
T Consensus 179 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 00000000000000 01124667888888888888665 45777888888888777763
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.3e-22 Score=174.37 Aligned_cols=131 Identities=28% Similarity=0.364 Sum_probs=97.9
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|+.|++++|+++.++ ..+..+++|++|++++|.++.++ .|..+++|++|++++|+++.+++..|..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 56777888888777776 35667777888888888777775 3567778888888888887777777777777888888
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
++|.|+.+++ ..|..+++|++|++++|.++.++.. .+..+++|+.|++++|.+.
T Consensus 117 ~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 117 DRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKG---VFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCS
T ss_pred CCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHh---HccCCcccceeEecCCcCc
Confidence 8887777776 5677777788888888877777653 4667777888888777654
No 7
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.7e-22 Score=181.64 Aligned_cols=216 Identities=18% Similarity=0.163 Sum_probs=151.8
Q ss_pred CcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC-ccccCCCC
Q 023142 14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP-NIGEFLPK 89 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~ 89 (286)
.|.++++|+.|++++|.++.++ ..+..+++|++|++++|.++.++ .|..+++|++|++++|+++.++. ..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 4777888888888888888664 55777888888888888888776 27778888888888888888776 56677888
Q ss_pred ccEEEeecC-cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHH-Hhhcchh
Q 023142 90 LHTLVLTNN-RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAAS-LFASEEM 167 (286)
Q Consensus 90 L~~L~Ls~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~ 167 (286)
|++|++++| .++.+++ ..|.++++|++|++++|.++.+... .+..+++|++|++++|.+..++.... .+.....
T Consensus 151 L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVEC 226 (353)
T ss_dssp CCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEE
T ss_pred CcEEECCCCccccccCH-HHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchhhhhhhcccccE
Confidence 888888887 4777665 5678888888888888888866332 67888889999999988766543221 1111111
Q ss_pred HHHHHhhhcccCCCCCCCCCC-----hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCc
Q 023142 168 EEEAKKESMKTLMPVEVPNVS-----EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239 (286)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~ 239 (286)
.. +....+.......++ .......+..+.++++.+..+|..+..+++|++|++++|.++ .||..++
T Consensus 227 L~----L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~~ 297 (353)
T 2z80_A 227 LE----LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGIF 297 (353)
T ss_dssp EE----EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTTT
T ss_pred EE----CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHHH
Confidence 10 011111110000000 001233577889999999999999999999999999999994 7998864
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=5.2e-23 Score=183.59 Aligned_cols=198 Identities=16% Similarity=0.131 Sum_probs=166.2
Q ss_pred CCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEee
Q 023142 18 AIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLT 96 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 96 (286)
.++++.|++++|.++.+|..+..+++|++|+|++|.++.+| .++.+++|++|+|++|+++.+|.. +..+++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECC
Confidence 47899999999999999988888999999999999999888 689999999999999999988665 5699999999999
Q ss_pred cCcCCC-CCCCccCC---------CCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142 97 NNRLVN-LVEIDPLT---------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE 166 (286)
Q Consensus 97 ~N~i~~-~~~~~~l~---------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 166 (286)
+|.+.+ +|. .+. ++++|++|++++|.++.+|. .+..+++|++|++++|.+..++
T Consensus 159 ~n~~~~~~p~--~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l~~l~---------- 222 (328)
T 4fcg_A 159 ACPELTELPE--PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLSALG---------- 222 (328)
T ss_dssp EETTCCCCCS--CSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCCCCCC----------
T ss_pred CCCCccccCh--hHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCCCcCc----------
Confidence 976554 543 443 49999999999999999998 6899999999999999854221
Q ss_pred hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCC
Q 023142 167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDS 245 (286)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~ 245 (286)
+....+.+|+.+++++|.+. .+|..++.+++|++|++++|.+ .+.+|..+.......
T Consensus 223 ---------------------~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~ 280 (328)
T 4fcg_A 223 ---------------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQLE 280 (328)
T ss_dssp ---------------------GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTTCC
T ss_pred ---------------------hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCCCC
Confidence 01124678999999998877 8888999999999999999988 489999887776655
Q ss_pred CCccccccc
Q 023142 246 GSKDVKEND 254 (286)
Q Consensus 246 ~~~~~~~~~ 254 (286)
.++.-....
T Consensus 281 ~L~L~~n~~ 289 (328)
T 4fcg_A 281 KLDLRGCVN 289 (328)
T ss_dssp EEECTTCTT
T ss_pred EEeCCCCCc
Confidence 555544333
No 9
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.3e-22 Score=179.43 Aligned_cols=179 Identities=20% Similarity=0.239 Sum_probs=107.1
Q ss_pred HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142 8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL 87 (286)
Q Consensus 8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 87 (286)
.+...+.+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.+++ +..+
T Consensus 52 ~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l 128 (308)
T 1h6u_A 52 GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGL 128 (308)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTC
T ss_pred CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh--hcCC
Confidence 34444445555555555555555555554 44455555555555555555555555555555555555555532 3455
Q ss_pred CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchh
Q 023142 88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEM 167 (286)
Q Consensus 88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 167 (286)
++|++|++++|.++.+++ +..+++|+.|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 129 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~------------- 187 (308)
T 1h6u_A 129 SNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP-----LANLSKLTTLKADDNKISD------------- 187 (308)
T ss_dssp TTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCC-------------
T ss_pred CCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh-----hcCCCCCCEEECCCCccCc-------------
Confidence 555555555555555443 4455555555555555555443 4455555555555554332
Q ss_pred HHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 168 EEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
++....+.+|+.+++++|+++.+++ +..+++|+.|++++|.+.
T Consensus 188 -------------------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 -------------------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -------------------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred -------------------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 1222346689999999999987774 888999999999999984
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=6.9e-22 Score=182.87 Aligned_cols=188 Identities=26% Similarity=0.295 Sum_probs=108.6
Q ss_pred CCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
..|.++++|+.|+|++|.|+.++ ..+..+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|..+++
T Consensus 82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 34555566666666666665554 44555566666666666666554 3555666666666666666665555555666
Q ss_pred ccEEEeec-CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhH
Q 023142 90 LHTLVLTN-NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEME 168 (286)
Q Consensus 90 L~~L~Ls~-N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 168 (286)
|++|++++ |.+..++. ..|.++++|++|++++|.++.+|. +..+++|+.|++++|.+..+
T Consensus 162 L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~------------- 222 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAI------------- 222 (440)
T ss_dssp CCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTSCCCEE-------------
T ss_pred cCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCCccCcc-------------
Confidence 66666665 33444444 455566666666666666666554 45566666666666654321
Q ss_pred HHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142 169 EEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPADL 238 (286)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~~g~iP~~~ 238 (286)
.+..+ ..+.+|+.+++++|+++.++ .++.++++|++|++++|.++ .+|...
T Consensus 223 -----------~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~ 274 (440)
T 3zyj_A 223 -----------RPGSF------QGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT--LLPHDL 274 (440)
T ss_dssp -----------CTTTT------TTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC--CCCTTT
T ss_pred -----------Chhhh------ccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC--ccChhH
Confidence 11111 23556777777777777443 45667777777777777773 455444
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=3.2e-22 Score=185.73 Aligned_cols=205 Identities=22% Similarity=0.239 Sum_probs=109.1
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|+.|+|++|+|+.++ ..+..+++|++|+|++|.|+.++ .|.++++|++|+|++|+|+.+++..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666666543 44555666666666666666553 4556666666666666666665555555666666666
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecC-CcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE 174 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
++|.|+.++. ..|.++++|+.|++++ |.+..++.. .+..+++|++|++++|.+..++. +.... .+
T Consensus 155 ~~N~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~~----~~~l~------~L 220 (452)
T 3zyi_A 155 RNNPIESIPS-YAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMPN----LTPLV------GL 220 (452)
T ss_dssp CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCCC----CTTCT------TC
T ss_pred CCCCcceeCH-hHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCccccccc----ccccc------cc
Confidence 6666665554 4555555555555555 344444432 34555555555555555443210 11000 00
Q ss_pred hcccCCCCCCCCC-C-hhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCc
Q 023142 175 SMKTLMPVEVPNV-S-EEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLK 239 (286)
Q Consensus 175 ~~~~~~~~~~~~~-~-~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~ 239 (286)
....+....+..+ + ....+.+|+.+++++|+++.+ |.++..+++|++|++++|.++ .+|....
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~ 286 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS--SLPHDLF 286 (452)
T ss_dssp CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCTTSS
T ss_pred cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC--ccChHHh
Confidence 0001111111101 0 112456777777777777744 456777777777777777773 4555443
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=1.7e-22 Score=199.33 Aligned_cols=240 Identities=18% Similarity=0.166 Sum_probs=161.3
Q ss_pred CCCcCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142 12 SPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 88 (286)
|..+.++++|+.|++++|+++ .+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|++++..+..+..++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCC
Confidence 456777888888888888887 66777777888888888888888 445 678888888999999888876666677888
Q ss_pred CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCChH-HHHHHHHHhhcc-
Q 023142 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKNK-ERMEAASLFASE- 165 (286)
Q Consensus 89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~- 165 (286)
+|++|++++|++++..+ ..++.+++|++|++++|+++ .+|. .++.+++|++|++++|.+. .++.. +|...
T Consensus 491 ~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~g~ip~~--~~~~~~ 563 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPA----ELGDCRSLIWLDLNTNLFNGTIPAA--MFKQSG 563 (768)
T ss_dssp TCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGGCTTCCEEECCSSEEESBCCGG--GGTTTT
T ss_pred CCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCCCEEECCCCccCCcCChH--Hhcccc
Confidence 99999999998886554 47888889999999999888 5666 6888999999999988764 22111 11100
Q ss_pred ------------------------------------hhHHH--H------------------------HhhhcccCCCCC
Q 023142 166 ------------------------------------EMEEE--A------------------------KKESMKTLMPVE 183 (286)
Q Consensus 166 ------------------------------------~~~~~--~------------------------~~~~~~~~~~~~ 183 (286)
.+... . ..+....+....
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 00000 0 000000000000
Q ss_pred CC-CCCh-hhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCcccccccccccc
Q 023142 184 VP-NVSE-EEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKDVKENDEKMVP 259 (286)
Q Consensus 184 ~~-~~~~-~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~~~~~~~~~~~ 259 (286)
+. .+|. .+.+.+|+.+++++|+++ .||..|+++++|+.|++++|.++ |.||..+........++.-.+.-.+.++
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred ccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECcCCcccccCC
Confidence 11 1222 256777777777777777 77777777777777777777774 6777777666655555554444434333
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=6.4e-20 Score=157.19 Aligned_cols=135 Identities=23% Similarity=0.334 Sum_probs=88.0
Q ss_pred CcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142 14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 90 (286)
.|.++++|++|++++|.|+.++ ..+..+++|++|+|++|.++.++ .|..+++|++|+|++|+|+.+++..|..+++|
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 133 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL 133 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence 3566666666666666666554 34555666666777666666654 45666667777777776666666666666667
Q ss_pred cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
++|++++|.|+.+++ ..|..+++|++|+|++|+++.++.. .+..+++|++|++++|++
T Consensus 134 ~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 134 KELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCB
T ss_pred cEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCce
Confidence 777777776666665 4566666677777777766666543 456666677777776665
No 14
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.83 E-value=5.1e-22 Score=173.21 Aligned_cols=199 Identities=16% Similarity=0.118 Sum_probs=151.6
Q ss_pred cEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (286)
Q Consensus 22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 99 (286)
+.++++++.++.+|..+ .++|++|++++|.++.++ .|..+++|++|++++|+++.+++..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 68999999999999654 579999999999999886 58999999999999999999988888899999999999997
Q ss_pred -CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhccc
Q 023142 100 -LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKT 178 (286)
Q Consensus 100 -i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (286)
++.+++ ..|..+++|++|++++|.++.++.. .+..+++|++|++++|.+..++. ..|.... .+....
T Consensus 92 ~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~------~L~~L~ 159 (285)
T 1ozn_A 92 QLRSVDP-ATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPD--DTFRDLG------NLTHLF 159 (285)
T ss_dssp TCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT--TTTTTCT------TCCEEE
T ss_pred CccccCH-HHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCCCEEECCCCcccccCH--hHhccCC------CccEEE
Confidence 998866 6899999999999999999988553 68899999999999998764321 1121111 111111
Q ss_pred CCCCCCCCCCh--hhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142 179 LMPVEVPNVSE--EEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPA 236 (286)
Q Consensus 179 ~~~~~~~~~~~--~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~ 236 (286)
+....+..++. ...+.+|+.+++++|.++.+ |..++.+++|+.|++++|.+. .+|.
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~ 218 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS--ALPT 218 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS--CCCH
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC--cCCH
Confidence 11111111111 13567788888888888754 677788888888888888873 3553
No 15
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.4e-20 Score=158.47 Aligned_cols=170 Identities=22% Similarity=0.294 Sum_probs=143.6
Q ss_pred cCHHHHhCCC--CcCCCCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142 4 LTADLIWKSP--HFFNAIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (286)
Q Consensus 4 Lt~~~i~~~~--~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~ 78 (286)
|+.+.|...+ .|.++++|++|++++|.++.++. .+..+++|++|++++|.++.++ .|..+++|++|++++|+++.
T Consensus 44 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred CcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence 4444455433 58899999999999999999884 4578999999999999999886 57899999999999999999
Q ss_pred cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHH
Q 023142 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEA 158 (286)
Q Consensus 79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 158 (286)
+++..|..+++|++|++++|.|+.+++ ..|..+++|+.|++++|.++.++.. .+..+++|++|++++|.+..++
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~-- 197 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEG---AFDKLTELKTLKLDNNQLKRVP-- 197 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCCSCCC--
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChh---HhccCCCcCEEECCCCcCCcCC--
Confidence 999888899999999999999999987 6789999999999999999998874 5789999999999999854221
Q ss_pred HHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH
Q 023142 159 ASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII 207 (286)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~ 207 (286)
+..+ ..+.+|+.+++++|.+.
T Consensus 198 ----------------------~~~~------~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 198 ----------------------EGAF------DSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ----------------------TTTT------TTCTTCCEEECCSSCBC
T ss_pred ----------------------HHHh------ccccCCCEEEecCCCee
Confidence 1111 13567889999998765
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=1.6e-23 Score=190.48 Aligned_cols=206 Identities=17% Similarity=0.098 Sum_probs=126.8
Q ss_pred cCCCCCccEEEeeCCCCcc----cccc-------ccCCCCcCEEeccCCCCCC-----CC-CCCCCCCCCeEeccCCcCc
Q 023142 15 FFNAIKERELDLRGNKIAV----IENL-------GATEDQFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRIT 77 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~----l~~~-------~~~l~~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~Ls~N~l~ 77 (286)
+..+++|++|+|++|.+.. +|.. +..+++|++|+|++|.++. ++ .+..+++|++|+|++|.++
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 6677888888888875553 2322 2567888888888888876 33 4667788888888888876
Q ss_pred ccCCccc----cCC---------CCccEEEeecCcCCC--CCCC-ccCCCCCCccEEEecCCcCCC------CCCchHHH
Q 023142 78 RINPNIG----EFL---------PKLHTLVLTNNRLVN--LVEI-DPLTSLPKLQFLSLLDNSITK------KPNYRLYV 135 (286)
Q Consensus 78 ~l~~~~~----~~l---------~~L~~L~Ls~N~i~~--~~~~-~~l~~l~~L~~L~L~~N~l~~------ip~~~~~~ 135 (286)
......+ ..+ ++|++|++++|+|+. ++.+ ..+..+++|++|++++|.++. ++. .
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~ 211 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----G 211 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH----H
Confidence 5433222 222 778888888887762 2210 135567778888888877762 221 3
Q ss_pred HhhCCCCcEEeCCCCChHHHHH--HHHHhhcchhHHHHHhhhcccCCCCCCCC-----CChh---hhccCCccCCCCHHH
Q 023142 136 IHKLKSLRVLDFKKVKNKERME--AASLFASEEMEEEAKKESMKTLMPVEVPN-----VSEE---EEQQTPKVVAPTPEQ 205 (286)
Q Consensus 136 l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~l~~l~ls~n~ 205 (286)
+..+++|++|++++|.+..... ....+..... +....+....+.. ++.. +.+.+|+.+++++|.
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~------L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN------LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT------CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC------cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 5677777888888777743211 0111221111 1111111111110 0011 125679999999998
Q ss_pred HHH-----HHHHH-HhcCCHHHHHHHHHHHh
Q 023142 206 IIA-----IKAAI-VNSQTLEEVARLEKVLK 230 (286)
Q Consensus 206 l~~-----ip~~i-~~~~~L~~l~l~~N~l~ 230 (286)
++. +|..+ .++++|+.|++++|.+.
T Consensus 286 i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 886 99888 77899999999999994
No 17
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=1.7e-22 Score=177.97 Aligned_cols=211 Identities=16% Similarity=0.153 Sum_probs=134.0
Q ss_pred CCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCC---C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142 19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKL---E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i---~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 93 (286)
++|++|++++|+++.+|. .+..+++|++|++++|.++.+ + .+..+++|++|++++|.++.++.. +..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEE
Confidence 577788888888877774 456777888888888877754 2 445677777788877777777554 3567777777
Q ss_pred EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK 173 (286)
Q Consensus 94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 173 (286)
++++|.++.++....+..+++|++|++++|.+..++.. .+..+++|++|++++|.+.+... ...|.... .
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~------~ 176 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFL-PDIFTELR------N 176 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEE-CSCCTTCT------T
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccc-hhHHhhCc------C
Confidence 77777777766434577777777777777777754432 46677777777777776543100 00011111 0
Q ss_pred hhcccCCCCCCCCC-C-hhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142 174 ESMKTLMPVEVPNV-S-EEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVLKSGQLPADLKIP 241 (286)
Q Consensus 174 ~~~~~~~~~~~~~~-~-~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~ 241 (286)
+....+....+..+ + ....+.+|+.+++++|+++.++ ..+..+++|+.|++++|.+. +.+|..+...
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~ 246 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHF 246 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC-BCSSSSCCCC
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc-ccCHHHHHhh
Confidence 11111111111111 0 1135678888888888888665 36788888899999988884 5666665554
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=1.5e-22 Score=188.85 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=99.2
Q ss_pred CCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 13 PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
..|.++++|++|+|++|.++.+ |..+..+++|++|+|++|.++.+| .|..+++|++|+|++|+++.+++..|..+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 4566777777777777777765 456667777777777777777765 3667777777777777777776666677777
Q ss_pred ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
|++|++++|.++.+++ ..|.++++|+.|++++|.++.++.. .+..+++|+.|++++|.+..
T Consensus 130 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 130 LKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEESCCCCE
T ss_pred CCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCCCCcCcE
Confidence 7777777777777665 5677777777777777777776653 56777777777777776543
No 19
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.1e-19 Score=153.03 Aligned_cols=131 Identities=27% Similarity=0.357 Sum_probs=121.6
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|+.|++++|.|+.++ ..+..+++|++|+|++|.|+.+ | .|..+++|++|+|++|+|+.+++..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 68999999999999887 4788899999999999999987 4 7999999999999999999999999999999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
++|.|+.+++ ..|..+++|++|+|++|+++.++.. .+..+++|++|++++|++.
T Consensus 112 ~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCCcC
Confidence 9999999987 6899999999999999999998874 6888999999999999874
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=8.1e-22 Score=171.16 Aligned_cols=206 Identities=20% Similarity=0.184 Sum_probs=154.8
Q ss_pred CCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|++|++++|.++.++. .+..+++|++|++++|.++.++ .|..+++|++|++++|+++.+++..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 579999999999998874 7888999999999999999885 5899999999999999999998888889999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK 173 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 173 (286)
++|.++.+++ ..+..+++|++|++++|.++. +|. .+..+++|++|++++|.+..+... .|..... +..
T Consensus 108 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~l~~----~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~---L~~ 177 (276)
T 2z62_A 108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQ---MPL 177 (276)
T ss_dssp TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEECGG--GGHHHHT---CTT
T ss_pred CCCCccccCc-hhcccCCCCCEEECcCCccceecCch----hhccCCCCCEEECCCCCCCcCCHH--Hhhhhhh---ccc
Confidence 9999999887 579999999999999999987 566 689999999999999987643210 0111100 000
Q ss_pred hh-cccCCCCCCCCCCh-hhhccCCccCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCC
Q 023142 174 ES-MKTLMPVEVPNVSE-EEEQQTPKVVAPTPEQIIAIKAA-IVNSQTLEEVARLEKVLKSGQLP 235 (286)
Q Consensus 174 ~~-~~~~~~~~~~~~~~-~~~~~~l~~l~ls~n~l~~ip~~-i~~~~~L~~l~l~~N~l~~g~iP 235 (286)
+. ...+....+..++. .....+|+.+++++|+++.+|.. +.++++|+.|++++|.+. +..|
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~-c~c~ 241 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD-CSCP 241 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC-CCTT
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc-ccCC
Confidence 00 01111111111111 11234688888888888877754 577888888888888884 4544
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=1.4e-21 Score=169.72 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=148.7
Q ss_pred EEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcC
Q 023142 23 ELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100 (286)
Q Consensus 23 ~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i 100 (286)
.++.++..++.+|..+. ++|++|++++|.++.++ .|..+++|++|++++|+++.+++..|..+++|++|++++|.|
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 56777888889997653 68999999999999885 689999999999999999999988888999999999999999
Q ss_pred CCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCC
Q 023142 101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLM 180 (286)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (286)
+.+++ ..|.++++|++|++++|.+..++.. .+..+++|++|++++|.+..+... ..|.... .+....+.
T Consensus 89 ~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~-~~~~~l~------~L~~L~Ls 157 (276)
T 2z62_A 89 QSLAL-GAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLP-EYFSNLT------NLEHLDLS 157 (276)
T ss_dssp CEECT-TTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCC-GGGGGCT------TCCEEECC
T ss_pred CccCh-hhhcCCccccEEECCCCCccccCch---hcccCCCCCEEECcCCccceecCc-hhhccCC------CCCEEECC
Confidence 99886 6899999999999999999988764 578999999999999987542100 0111111 11111111
Q ss_pred CCCCCCCC--hhhhccCCc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCc
Q 023142 181 PVEVPNVS--EEEEQQTPK----VVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLK 239 (286)
Q Consensus 181 ~~~~~~~~--~~~~~~~l~----~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~ 239 (286)
...+..++ ....+.++. .+++++|.++.++.......+|++|++++|.++ .+|..+.
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~ 220 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK--SVPDGIF 220 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS--CCCTTTT
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee--ecCHhHh
Confidence 11121111 113344444 567777777777666656667888888888883 5666543
No 22
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=1.2e-19 Score=157.38 Aligned_cols=146 Identities=21% Similarity=0.268 Sum_probs=131.8
Q ss_pred ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCccc
Q 023142 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRI 79 (286)
Q Consensus 3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l 79 (286)
.++.+.+...+.+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++ .|..+++|++|++++|+++.+
T Consensus 69 ~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 148 (272)
T 3rfs_A 69 ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148 (272)
T ss_dssp ECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc
Confidence 4556667777789999999999999999998874 5678999999999999999886 389999999999999999999
Q ss_pred CCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 80 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
++..+..+++|++|++++|.|+.+++ ..|..+++|++|++++|+++.++.. .+..+++|++|++++|++
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCB
T ss_pred CHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHH---HHhCCcCCCEEEccCCCc
Confidence 99888899999999999999999987 6789999999999999999988764 578999999999999975
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=8.8e-20 Score=159.96 Aligned_cols=135 Identities=27% Similarity=0.293 Sum_probs=69.7
Q ss_pred CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
.|.++++|+.|++++|.|+.++.. ..+++|++|++++|.|+.+| .+..+++|++|++++|+|+.+++..|..+++|++
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred HhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 355555555555555555555433 33555555555555555554 3445555555555555555555444455555555
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
|++++|+|+.+++ ..|..+++|+.|++++|+++.+|.. .+..+++|++|++++|.+.
T Consensus 129 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 129 LYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPAG---LLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp EECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTT---TTTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCccCh-hhcccccCCCEEECCCCcCCccCHH---HhcCcCCCCEEECCCCcCC
Confidence 5555555555544 3444555555555555555555442 3344555555555555444
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=1.9e-21 Score=180.50 Aligned_cols=209 Identities=17% Similarity=0.156 Sum_probs=163.9
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
....++.+++.++.+|..+ .+++++|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|.++++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3578999999999999765 378999999999999873 799999999999999999999988899999999999999
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-hHHHHHHHHHhhcchhHHHHHhhhc
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK-NKERMEAASLFASEEMEEEAKKESM 176 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (286)
|.|+.+++ ..|.++++|++|+|++|+++.++.. .+..+++|+.|++++|. +..++. ..|.+.. .+..
T Consensus 133 n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~------~L~~ 200 (452)
T 3zyi_A 133 NWLTVIPS-GAFEYLSKLRELWLRNNPIESIPSY---AFNRVPSLMRLDLGELKKLEYISE--GAFEGLF------NLKY 200 (452)
T ss_dssp SCCSBCCT-TTSSSCTTCCEEECCSCCCCEECTT---TTTTCTTCCEEECCCCTTCCEECT--TTTTTCT------TCCE
T ss_pred CcCCccCh-hhhcccCCCCEEECCCCCcceeCHh---HHhcCCcccEEeCCCCCCccccCh--hhccCCC------CCCE
Confidence 99999987 6799999999999999999998875 68899999999999853 222110 0122221 1122
Q ss_pred ccCCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCC
Q 023142 177 KTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY 243 (286)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~ 243 (286)
..+....+..++....+.+|+.+++++|+++.+ |..|..+++|+.|++++|.+. +..|..+.....
T Consensus 201 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 267 (452)
T 3zyi_A 201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLAS 267 (452)
T ss_dssp EECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred EECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCC
Confidence 222222333344455688999999999999965 678999999999999999994 344555544433
No 25
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.81 E-value=2.4e-20 Score=150.10 Aligned_cols=140 Identities=29% Similarity=0.378 Sum_probs=125.8
Q ss_pred CCCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142 16 FNAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 93 (286)
..+++|+.|++++|.++ .+|..+..+++|++|++++|.++.++.+..+++|++|++++|+++...+..+..+++|++|
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34588999999999999 8998888899999999999999988889999999999999999999667777679999999
Q ss_pred EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
++++|.|+.++.+..+..+++|++|++++|+++.++.++...+..+++|++|++++|.+.++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999987445799999999999999999999886555899999999999999986543
No 26
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=1.1e-21 Score=166.91 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=153.4
Q ss_pred CCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCC-CCCCC--CCCCCCCCCeEeccC-CcCcccCCccccCCCCccE
Q 023142 18 AIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNE-IVKLE--NMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~-l~~i~--~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~ 92 (286)
.++|+.|++++|+|+.++. .+..+++|++|++++|. ++.++ .|..+++|++|++++ |+++.+++..|..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3589999999999999885 78889999999999997 99886 688999999999999 9999999888889999999
Q ss_pred EEeecCcCCCCCCCccCCCCCCcc---EEEecCC-cCCCCCCchHHHHhhCCCCc-EEeCCCCChHHHHHHHHHhhcchh
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQ---FLSLLDN-SITKKPNYRLYVIHKLKSLR-VLDFKKVKNKERMEAASLFASEEM 167 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~---~L~L~~N-~l~~ip~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~ 167 (286)
|++++|.++.+|. |..+++|+ +|++++| .++.++.. .+..+++|+ .|++++|.+..++
T Consensus 110 L~l~~n~l~~lp~---~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l~~i~----------- 172 (239)
T 2xwt_C 110 LGIFNTGLKMFPD---LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGFTSVQ----------- 172 (239)
T ss_dssp EEEEEECCCSCCC---CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCCCEEC-----------
T ss_pred EeCCCCCCccccc---cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCCcccC-----------
Confidence 9999999999875 77777777 9999999 99988875 688999999 9999999754321
Q ss_pred HHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHH-HHHHH-HHHHhc-CCHHHHHHHHHHHhcCCCCCC
Q 023142 168 EEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQ-IIAIK-AAIVNS-QTLEEVARLEKVLKSGQLPAD 237 (286)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~-l~~ip-~~i~~~-~~L~~l~l~~N~l~~g~iP~~ 237 (286)
+..+. ..+|+.+++++|+ ++.+| ..+..+ ++|++|++++|.++ .+|..
T Consensus 173 -------------~~~~~-------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~--~l~~~ 223 (239)
T 2xwt_C 173 -------------GYAFN-------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT--ALPSK 223 (239)
T ss_dssp -------------TTTTT-------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC--CCCCT
T ss_pred -------------HhhcC-------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc--cCChh
Confidence 11111 2468899999995 88876 567888 99999999999994 57765
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1e-19 Score=155.92 Aligned_cols=156 Identities=21% Similarity=0.260 Sum_probs=129.0
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++++.|++++|.++.++ ..+..+++|++|+|++|.|+.++ .|..+++|++|++++|+++.+++..|..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 67899999999999776 46778999999999999999875 4888999999999999999998888888999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKES 175 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (286)
++|.|+.+++ ..|..+++|+.|++++|.++.++.. .+..+++|++|++++|.+..+
T Consensus 115 ~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~-------------------- 170 (251)
T 3m19_A 115 GGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSV-------------------- 170 (251)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCC--------------------
T ss_pred CCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCcc--------------------
Confidence 9999999887 6788899999999999999988764 578899999999999975422
Q ss_pred cccCCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142 176 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA 208 (286)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ 208 (286)
.+..+ ..+.+|+.+++++|.+.+
T Consensus 171 ----~~~~~------~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 ----PHGAF------DRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ----CTTTT------TTCTTCCEEECCSCCBCT
T ss_pred ----CHHHH------hCCCCCCEEEeeCCceeC
Confidence 11111 135678888998888764
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=6e-23 Score=181.96 Aligned_cols=210 Identities=16% Similarity=0.208 Sum_probs=150.7
Q ss_pred CCCcCCCCCccEEEeeC-CCCc-cccccccCCCCcCEEeccCCCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142 12 SPHFFNAIKERELDLRG-NKIA-VIENLGATEDQFDTIDLSDNEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFL 87 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~-n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 87 (286)
|..+.++++|++|++++ |.+. .+|..+..+++|++|++++|.++ .+| .|..+++|++|++++|++++..+..+..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 66788888999999985 8887 67878888899999999999888 556 58888999999999998886656666788
Q ss_pred CCccEEEeecCcCC-CCCCCccCCCCC-CccEEEecCCcCC-CCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhc
Q 023142 88 PKLHTLVLTNNRLV-NLVEIDPLTSLP-KLQFLSLLDNSIT-KKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS 164 (286)
Q Consensus 88 ~~L~~L~Ls~N~i~-~~~~~~~l~~l~-~L~~L~L~~N~l~-~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 164 (286)
++|++|++++|.|+ .+|. .+..++ +|++|++++|.++ .+|. .+..++ |++|++++|.+..... ..|..
T Consensus 149 ~~L~~L~L~~N~l~~~~p~--~l~~l~~~L~~L~L~~N~l~~~~~~----~~~~l~-L~~L~Ls~N~l~~~~~--~~~~~ 219 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPP----TFANLN-LAFVDLSRNMLEGDAS--VLFGS 219 (313)
T ss_dssp TTCCEEECCSSCCEEECCG--GGGCCCTTCCEEECCSSEEEEECCG----GGGGCC-CSEEECCSSEEEECCG--GGCCT
T ss_pred CCCCeEECcCCcccCcCCH--HHhhhhhcCcEEECcCCeeeccCCh----HHhCCc-ccEEECcCCcccCcCC--HHHhc
Confidence 89999999999888 4443 677777 8889999988887 5555 567776 8888888887643210 01111
Q ss_pred chhHHHHHhhhcccCCCCCCC-CCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 023142 165 EEMEEEAKKESMKTLMPVEVP-NVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPAD 237 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~ 237 (286)
... +....+....+. ..+....+.+|+.+++++|+++ .+|..+..+++|++|++++|.+. |.+|..
T Consensus 220 l~~------L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~ip~~ 287 (313)
T 1ogq_A 220 DKN------TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GEIPQG 287 (313)
T ss_dssp TSC------CSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EECCCS
T ss_pred CCC------CCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc-ccCCCC
Confidence 110 000000000000 0111234678899999999998 88888999999999999999995 678864
No 29
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=2.2e-21 Score=179.52 Aligned_cols=187 Identities=21% Similarity=0.258 Sum_probs=119.5
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++++.|+|++|+|+.++ ..+..+++|++|+|++|.|+.++ .|.++++|++|+|++|+|+.+++..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45666666666666554 45555666666666666666553 4566666666666666666666555556666666666
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecC-CcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE 174 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
++|.|+.+++ ..|..+++|+.|++++ |.+..++.. .+..+++|++|++++|.+..
T Consensus 144 ~~N~i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~-------------------- 199 (440)
T 3zyj_A 144 RNNPIESIPS-YAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLRE-------------------- 199 (440)
T ss_dssp CSCCCCEECT-TTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCSS--------------------
T ss_pred CCCcccccCH-HHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcCcc--------------------
Confidence 6666666554 4566666666666665 344444443 45566666666666665432
Q ss_pred hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCC
Q 023142 175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIPD 242 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~ 242 (286)
++....+.+|+.+++++|+++.+ |..|..+++|+.|++++|.+. +..|..+....
T Consensus 200 ------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 255 (440)
T 3zyj_A 200 ------------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQ 255 (440)
T ss_dssp ------------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCT
T ss_pred ------------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-EEChhhhcCCC
Confidence 12223477899999999999966 578899999999999999994 33344444433
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.5e-21 Score=173.79 Aligned_cols=127 Identities=20% Similarity=0.283 Sum_probs=64.0
Q ss_pred CCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|+.|++++|.|+.++. .+..+++|++|++++|.++.+ | .|..+++|++|++++|+++.+|...+ ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence 455556666666555542 445555566666666655554 3 45555556666665555555544332 34555555
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
++|.++.+++ ..|.++++|+.|++++|.+.. +... .+..+++|++|++++|.+
T Consensus 129 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 129 HENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCSSCC
T ss_pred CCCcccccCH-hHhcCCccccEEECCCCcCCccCcChh---hccCCCCcCEEECCCCcc
Confidence 5555554443 334445555555555554432 1111 344444444444444443
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.4e-22 Score=179.49 Aligned_cols=226 Identities=16% Similarity=0.191 Sum_probs=171.2
Q ss_pred CCccEEEeeCCCCc---cccccccCCCCcCEEeccC-CCCC-CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 19 IKERELDLRGNKIA---VIENLGATEDQFDTIDLSD-NEIV-KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~-N~l~-~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
.+++.|++++|.++ .+|..+..+++|++|++++ |.+. .+| .|..+++|++|++++|++++..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5888999999999999995 8888 556 7899999999999999999766666789999999
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHHHHhhCC-CCcEEeCCCCChHHHHHHHHHhhcchhHHH
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLYVIHKLK-SLRVLDFKKVKNKERMEAASLFASEEMEEE 170 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 170 (286)
|++++|.|++..+ ..+..+++|++|++++|+++ .+|. .+..++ +|++|++++|.+..... ..|....
T Consensus 130 L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----~l~~l~~~L~~L~L~~N~l~~~~~--~~~~~l~---- 198 (313)
T 1ogq_A 130 LDFSYNALSGTLP-PSISSLPNLVGITFDGNRISGAIPD----SYGSFSKLFTSMTISRNRLTGKIP--PTFANLN---- 198 (313)
T ss_dssp EECCSSEEESCCC-GGGGGCTTCCEEECCSSCCEEECCG----GGGCCCTTCCEEECCSSEEEEECC--GGGGGCC----
T ss_pred EeCCCCccCCcCC-hHHhcCCCCCeEECcCCcccCcCCH----HHhhhhhcCcEEECcCCeeeccCC--hHHhCCc----
Confidence 9999999996544 48999999999999999998 7777 688888 99999999998652110 0111111
Q ss_pred HHhhhcccCCCCCCC-CCCh-hhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCc
Q 023142 171 AKKESMKTLMPVEVP-NVSE-EEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK 248 (286)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~~~-~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~ 248 (286)
+..+ .+....+. ..+. ...+.+|+.+++++|+++..++.+..+++|++|++++|.+. |.+|..+........++
T Consensus 199 L~~L---~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 199 LAFV---DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY-GTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp CSEE---ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE-ECCCGGGGGCTTCCEEE
T ss_pred ccEE---ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc-CcCChHHhcCcCCCEEE
Confidence 1111 11110000 0111 14678899999999999855555888999999999999995 78998888776666665
Q ss_pred ccccccccccc
Q 023142 249 DVKENDEKMVP 259 (286)
Q Consensus 249 ~~~~~~~~~~~ 259 (286)
...+.-.+..+
T Consensus 275 Ls~N~l~~~ip 285 (313)
T 1ogq_A 275 VSFNNLCGEIP 285 (313)
T ss_dssp CCSSEEEEECC
T ss_pred CcCCcccccCC
Confidence 54444433333
No 32
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=7.2e-21 Score=169.54 Aligned_cols=127 Identities=22% Similarity=0.317 Sum_probs=76.0
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|+.|++++|.++.++ ..+..+++|++|++++|.++.+ | .|..+++|++|++++|+++.+|...+ ++|++|++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l 130 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRI 130 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEEC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEEC
Confidence 46666677766666654 3556666666777766666655 2 46666666666666666666655443 56666666
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
++|.|+.+++ ..|.++++|+.|++++|.++. +... .+..+ +|++|++++|.+.
T Consensus 131 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 131 HDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPG---AFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTT---SSCSC-CCSCCBCCSSBCS
T ss_pred CCCccCccCH-hHhCCCccCCEEECCCCccccCCCCcc---cccCC-ccCEEECcCCCCC
Confidence 6666666655 456666666666666666642 2111 23333 5555555555443
No 33
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.80 E-value=2.1e-19 Score=157.60 Aligned_cols=176 Identities=20% Similarity=0.183 Sum_probs=134.2
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
++++.|++++|.|+.++ ..+..+++|++|+|++|.|+.++....+++|++|++++|+|+.+|.. +..+++|++|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCC
Confidence 68999999999999775 67788999999999999999887678899999999999999988764 46889999999999
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK 177 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (286)
|+|+.+++ ..|.++++|++|++++|+++.++.. .+..+++|+.|++++|.++.++. ..|..... +...
T Consensus 110 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~--~~~~~l~~------L~~L 177 (290)
T 1p9a_G 110 NRLTSLPL-GALRGLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPA--GLLNGLEN------LDTL 177 (290)
T ss_dssp SCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECTTSCCSCCCT--TTTTTCTT------CCEE
T ss_pred CcCcccCH-HHHcCCCCCCEEECCCCCCCccChh---hcccccCCCEEECCCCcCCccCH--HHhcCcCC------CCEE
Confidence 99999886 6799999999999999999988775 57889999999999998875432 12222221 1111
Q ss_pred cCCCCCCCCCChh-hhccCCccCCCCHHHHH
Q 023142 178 TLMPVEVPNVSEE-EEQQTPKVVAPTPEQII 207 (286)
Q Consensus 178 ~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~ 207 (286)
.+....+..+|.. .....|+.+.+++|.+.
T Consensus 178 ~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 178 LLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 1111122222222 34567888889888765
No 34
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=3.4e-19 Score=150.88 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=119.9
Q ss_pred CCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 18 AIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
.++|+.|++++|.|+.+ |..+..+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|..+++|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 47899999999999987 477888999999999999999886 478999999999999999999998888999999999
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
+++|+|+.+|. .+..+++|++|+|++|+++.++.. .+..+++|+.|++++|++.
T Consensus 119 Ls~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 119 MCCNKLTELPR--GIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCSCCT--TGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCBC
T ss_pred ccCCcccccCc--ccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCCcc
Confidence 99999999986 788999999999999999998864 6889999999999999864
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=8.6e-22 Score=179.23 Aligned_cols=132 Identities=19% Similarity=0.289 Sum_probs=75.9
Q ss_pred CCCccEEEeeCCCCcccccc-ccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 18 AIKERELDLRGNKIAVIENL-GATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
+.+++.|++++|.++.+|.. +..+++|++|++++|.++.++ .|..+++|++|++++|+++.+++..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 35556666666666655532 344566666666666665553 455566666666666666666555555566666666
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
+++|.|+.++. ..|.++++|++|++++|.++.++.. .+..+++|++|++++|.+.
T Consensus 124 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 124 LERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIEDD---TFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCcCCH-HHhcCCCCCcEEECCCCccCccChh---hccCCCCCCEEECCCCcCC
Confidence 66666665554 3455566666666666666555432 3555566666666665544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=9.9e-22 Score=188.65 Aligned_cols=47 Identities=17% Similarity=-0.031 Sum_probs=30.2
Q ss_pred hhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142 190 EEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADL 238 (286)
Q Consensus 190 ~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~ 238 (286)
...+.+|+.+++++|.++.+ |..++.+++|+.|++++|.+. .+|..+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~ 297 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV--ALNLYG 297 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC--EEECSS
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC--CCCccc
Confidence 35566777777777777633 566677777777777777763 355444
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=1.7e-21 Score=192.13 Aligned_cols=215 Identities=19% Similarity=0.171 Sum_probs=147.6
Q ss_pred CCCcCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCCC-CC-CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142 12 SPHFFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVK-LE-NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~-i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 88 (286)
|..+.++++|+.|++++|.++ .+|..+..+++|++|++++|.++. +| .+..+++|++|++++|++++..+..+..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 556777888888888888887 667777778888888888888873 45 577788888888888888765565666778
Q ss_pred CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-CCCCchHH---------------------------------
Q 023142 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-KKPNYRLY--------------------------------- 134 (286)
Q Consensus 89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-~ip~~~~~--------------------------------- 134 (286)
+|++|++++|++++..+ ..+..+++|+.|++++|+++ .+|...+.
T Consensus 515 ~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TCCEEECCSSCCEEECC-GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCEEECCCCcccCcCC-HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 88888888888775443 46777788888888887776 44432100
Q ss_pred ---------------------------------HHhhCCCCcEEeCCCCChHHH-HHHHHHhhcchhHHHHHhhhcccCC
Q 023142 135 ---------------------------------VIHKLKSLRVLDFKKVKNKER-MEAASLFASEEMEEEAKKESMKTLM 180 (286)
Q Consensus 135 ---------------------------------~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (286)
.+..+++|++|++++|.+... +. .|..+. .+....+.
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~------~L~~L~Ls 664 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGSMP------YLFILNLG 664 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG---GGGGCT------TCCEEECC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH---HHhccc------cCCEEeCc
Confidence 122345677778877775421 11 011111 11111111
Q ss_pred CCCCC-CCC-hhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 023142 181 PVEVP-NVS-EEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLKSGQLPAD 237 (286)
Q Consensus 181 ~~~~~-~~~-~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~ 237 (286)
...+. .+| ..+.+.+|+.+++++|+++ .+|..++++++|++|++++|.++ |.||..
T Consensus 665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~~ 723 (768)
T 3rgz_A 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS-GPIPEM 723 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE-EECCSS
T ss_pred CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc-ccCCCc
Confidence 11111 122 2367899999999999999 99999999999999999999995 899965
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=5.6e-21 Score=170.86 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=139.5
Q ss_pred cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCcc
Q 023142 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI 83 (286)
Q Consensus 4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~ 83 (286)
++.+.+...+.+..+++|++|++++|+++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.+++
T Consensus 51 l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-- 127 (347)
T 4fmz_A 51 VAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-- 127 (347)
T ss_dssp CCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG--
T ss_pred EeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh--
Confidence 445556666678888889999999998888877 67788999999999988888888888999999999998888865
Q ss_pred ccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhh
Q 023142 84 GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFA 163 (286)
Q Consensus 84 ~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 163 (286)
+..+++|++|++++|......+ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +.
T Consensus 128 ~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~----~~ 196 (347)
T 4fmz_A 128 LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP-----IANLTDLYSLSLNYNQIEDISP----LA 196 (347)
T ss_dssp GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEECTTSCCCCCGG----GG
T ss_pred hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh-----hccCCCCCEEEccCCccccccc----cc
Confidence 5688888888888885444333 47788888888888888877664 6788888888888887654432 11
Q ss_pred cchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023142 164 SEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 229 (286)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l 229 (286)
... .+....+....+..++....+.+|+.+++++|+++.++. +..+++|++|++++|.+
T Consensus 197 ~l~------~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 197 SLT------SLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp GCT------TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred CCC------ccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCcc
Confidence 111 111111111112222223345556666666666655544 55556666666655555
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=7.4e-22 Score=177.41 Aligned_cols=147 Identities=19% Similarity=0.168 Sum_probs=127.9
Q ss_pred cCHHHHhC--CCCcCCCCCccEEEeeCCCCcccccc-ccCCCCcCEEeccCCCCCCCCC---CCCCCCCCeEeccCC-cC
Q 023142 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIENL-GATEDQFDTIDLSDNEIVKLEN---MPHLNRLGTLIINNN-RI 76 (286)
Q Consensus 4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i~~---~~~l~~L~~L~Ls~N-~l 76 (286)
++.+.++. +..|.++++|++|++++|+++.++.. +..+++|++|++++|.++.+|. |..+++|++|++++| .+
T Consensus 83 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 83 LTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence 44444554 34588999999999999999999854 7889999999999999998864 889999999999999 68
Q ss_pred cccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 77 TRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 77 ~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
+.+++..+..+++|++|++++|.++.+.+ ..+..+++|++|++++|.+..++.. .+..+++|+.|++++|.+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEP-KSLKSIQNVSHLILHMKQHILLLEI---FVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSCSTTHHHH---HHHHTTTEEEEEEESCBCTT
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCH-HHHhccccCCeecCCCCccccchhh---hhhhcccccEEECCCCcccc
Confidence 89988888899999999999999998865 6899999999999999999887763 56679999999999998764
No 40
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=149.47 Aligned_cols=145 Identities=25% Similarity=0.351 Sum_probs=125.0
Q ss_pred cCHHHHhCCCCcCCCCCccEEEeeCCCCcccc--ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCccc
Q 023142 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIE--NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRI 79 (286)
Q Consensus 4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~--~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l 79 (286)
++.+.++..+. .-...++.|++++|+|+.++ ..+..+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+
T Consensus 18 ~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 96 (220)
T 2v70_A 18 CSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV 96 (220)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC
T ss_pred eCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc
Confidence 34444444332 11346789999999999884 45788999999999999999885 699999999999999999999
Q ss_pred CCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 80 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
++..|..+++|++|+|++|.|+.+++ ..|.++++|++|+|++|+++.++.. .+..+++|+.|++++|++.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHH---HhcCCCCCCEEEecCcCCc
Confidence 99988999999999999999999976 6899999999999999999988443 6889999999999999974
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=6e-21 Score=183.22 Aligned_cols=206 Identities=17% Similarity=0.144 Sum_probs=115.4
Q ss_pred CCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 16 FNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
.++++|++|++++|.|+.++ ..+..+++|++|+|++|.++.++ .|+.+++|++|+|++|.|+.+|+..|..+++|++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 34455555555555555444 24455555555555555555543 3455555555555555555555555455555555
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCch----------------------------------------
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYR---------------------------------------- 132 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~---------------------------------------- 132 (286)
|++++|.|+.+++ ..|+++++|++|++++|.++.++...
T Consensus 152 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~ 230 (597)
T 3oja_B 152 LSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 230 (597)
T ss_dssp EECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC
T ss_pred EEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc
Confidence 5555555555544 34555555555555555444322100
Q ss_pred ----------------HHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccC
Q 023142 133 ----------------LYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQT 195 (286)
Q Consensus 133 ----------------~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 195 (286)
...+..+++|+.|++++|.+..... ..|.... .+....+....+..++.. ..+++
T Consensus 231 ~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~------~L~~L~Ls~N~l~~l~~~~~~l~~ 302 (597)
T 3oja_B 231 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQ------RLERLYISNNRLVALNLYGQPIPT 302 (597)
T ss_dssp CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEES--GGGTTCS------SCCEEECTTSCCCEEECSSSCCTT
T ss_pred CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCH--HHhcCcc------CCCEEECCCCCCCCCCcccccCCC
Confidence 0136778889999999998654310 0122211 111111111111111111 34678
Q ss_pred CccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 196 PKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 196 l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
|+.+++++|.++.+|..++.+++|+.|++++|.+.
T Consensus 303 L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp CCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC
T ss_pred CcEEECCCCCCCccCcccccCCCCCEEECCCCCCC
Confidence 99999999999999988999999999999999884
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.79 E-value=2.2e-21 Score=180.94 Aligned_cols=221 Identities=19% Similarity=0.197 Sum_probs=155.2
Q ss_pred cCHHHHhC--CCCcCCCCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (286)
Q Consensus 4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~ 78 (286)
|+.+.|.. +..|.++++|++|++++|.++.+|. .+..+++|++|+|++|.+..++ .|..+++|+.|++++|.++.
T Consensus 63 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 63 LNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred CCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce
Confidence 34444443 5678899999999999999999884 5778999999999999999773 68899999999999999999
Q ss_pred cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-------
Q 023142 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK------- 151 (286)
Q Consensus 79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~------- 151 (286)
+++..|..+++|+.|++++|.++.++. ..|.++++|+.|++++|.+..++.. .+..+++|+.|++++|.
T Consensus 143 ~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 143 ISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp ECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEECT
T ss_pred eChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccCc
Confidence 988888899999999999999998886 5688889999999999988876654 45666666666666653
Q ss_pred -----------------hHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCCh--hhhccCCccCCCCHHHHHHH-HH
Q 023142 152 -----------------NKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSE--EEEQQTPKVVAPTPEQIIAI-KA 211 (286)
Q Consensus 152 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~ls~n~l~~i-p~ 211 (286)
+..++. ..|.... .+....+....+..++. ...+.+|+.+++++|+++.+ |.
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPY--LAVRHLV------YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCH--HHHTTCT------TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ccccCccccEEECcCCcccccCH--HHhcCcc------ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 322210 0111111 01111111111111111 13466777777777777744 46
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 023142 212 AIVNSQTLEEVARLEKVLKSGQLPADL 238 (286)
Q Consensus 212 ~i~~~~~L~~l~l~~N~l~~g~iP~~~ 238 (286)
++..+++|++|++++|.++ .+|...
T Consensus 291 ~~~~l~~L~~L~L~~N~l~--~~~~~~ 315 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGNQLT--TLEESV 315 (477)
T ss_dssp TBTTCTTCCEEECCSSCCS--CCCGGG
T ss_pred HhcCcccCCEEECCCCcCc--eeCHhH
Confidence 6777888888888888773 455543
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=4.7e-21 Score=183.62 Aligned_cols=137 Identities=20% Similarity=0.192 Sum_probs=84.5
Q ss_pred CCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 13 PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
..|.++++|++|++++|+++.+ |..+..+++|++|++++|.++.+ | .|+.+++|++|++++|+++.+++..+..+++
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~ 130 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence 3566666666666666666654 35566666666666666666654 2 4666666666666666666665555566666
Q ss_pred ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCc--EEeCCCCChH
Q 023142 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLR--VLDFKKVKNK 153 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~--~L~l~~n~~~ 153 (286)
|++|++++|.++.++. ..+..+++|++|++++|.++.++.. .++.+++|+ .|++++|.+.
T Consensus 131 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 131 LESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp CCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEECTTCCCC
T ss_pred ccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEecCCCccC
Confidence 6666666666666532 2344466666666666666655432 466666666 6666666554
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.3e-21 Score=172.94 Aligned_cols=177 Identities=19% Similarity=0.229 Sum_probs=153.0
Q ss_pred CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
..+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++ .+..+++|++
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~l~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 111 (308)
T 1h6u_A 35 VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKT 111 (308)
T ss_dssp ECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCE
T ss_pred ecHHHcCCcCEEEeeCCCccCchh-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCE
Confidence 344557899999999999999884 6679999999999999999877999999999999999999985 3578999999
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHH
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK 172 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 172 (286)
|++++|.|+.++. +..+++|+.|++++|.++.++. +..+++|++|++++|.+..++
T Consensus 112 L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~---------------- 167 (308)
T 1h6u_A 112 LDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLT---------------- 167 (308)
T ss_dssp EECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCG----------------
T ss_pred EECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCCh----------------
Confidence 9999999999764 8899999999999999998875 789999999999999864321
Q ss_pred hhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142 173 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235 (286)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP 235 (286)
....+.+|+.+++++|+++.++. +..+++|++|++++|.+. .+|
T Consensus 168 ----------------~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~--~~~ 211 (308)
T 1h6u_A 168 ----------------PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS--DVS 211 (308)
T ss_dssp ----------------GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC--BCG
T ss_pred ----------------hhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC--ccc
Confidence 01136689999999999998776 899999999999999994 455
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=5.8e-20 Score=162.86 Aligned_cols=210 Identities=17% Similarity=0.107 Sum_probs=131.0
Q ss_pred CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC------------------CCCCCCCCeEeccCCc
Q 023142 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPHLNRLGTLIINNNR 75 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~l~~L~~L~Ls~N~ 75 (286)
.|.++++|+.|++++|.++.+++ +..+++|++|++++|.++.++. ...+++|++|++++|+
T Consensus 53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK 131 (317)
T ss_dssp HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSC
T ss_pred HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCC
Confidence 35556666666666666664443 4445556666665555543320 1224566777777777
Q ss_pred CcccCCccccCCCCccEEEeecCcCCCCCCCccC-CCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL-TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 76 l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l-~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
++.+++..+..+++|++|++++|.|+.+++ ..+ ..+++|++|++++|.++.++.. ..+++|++|++++|.+..
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKGQ-----VVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEECC-----CCCTTCCEEECCSSCCCE
T ss_pred CCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCcccccc-----cccccCCEEECCCCcCCc
Confidence 777766666677888888888888877654 344 4677788888888888777552 347778888888887654
Q ss_pred HHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccCCccCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhc
Q 023142 155 RMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVARLEKVLKS 231 (286)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~--~ip~~i~~~~~L~~l~l~~N~l~~ 231 (286)
++.. |.... .+....+....+..+|.. ..+.+|+.+++++|.+. .+|..++.+++|+.+++..+.--.
T Consensus 206 l~~~---~~~l~------~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 206 MGPE---FQSAA------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp ECGG---GGGGT------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred chhh---hcccC------cccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 4221 22111 111111111111111111 35678999999999998 888999999999999999554334
Q ss_pred CCCCCCCc
Q 023142 232 GQLPADLK 239 (286)
Q Consensus 232 g~iP~~~~ 239 (286)
|..|....
T Consensus 277 ~~~~~~~~ 284 (317)
T 3o53_A 277 GQNEEECT 284 (317)
T ss_dssp SSSSCCCS
T ss_pred CCchhccC
Confidence 66665443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.79 E-value=8.3e-21 Score=168.92 Aligned_cols=218 Identities=18% Similarity=0.198 Sum_probs=159.6
Q ss_pred cCHHHHhCC--CCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCccc
Q 023142 4 LTADLIWKS--PHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRI 79 (286)
Q Consensus 4 Lt~~~i~~~--~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l 79 (286)
|+.+.|+.. ..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+| .+. ++|++|++++|+++.+
T Consensus 59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~ 136 (330)
T 1xku_A 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKV 136 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBB
T ss_pred CCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCccccc
Confidence 444555543 3588999999999999999987 678888999999999999999887 333 7899999999999998
Q ss_pred CCccccCCCCccEEEeecCcCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142 80 NPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME 157 (286)
Q Consensus 80 ~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 157 (286)
++..+..+++|++|++++|.++. +.+ ..+.++++|++|++++|.++.+|.. ..++|++|++++|.+.....
T Consensus 137 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~------~~~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 137 RKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITTIPQG------LPPSLTELHLDGNKITKVDA 209 (330)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCSCCSS------CCTTCSEEECTTSCCCEECT
T ss_pred CHhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCccccCCcc------ccccCCEEECCCCcCCccCH
Confidence 88878889999999999998864 333 4678888899999999888888763 23788888888887653310
Q ss_pred HHHHhhcchhHHHHHhhhcccCCCCCCCCCC--hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142 158 AASLFASEEMEEEAKKESMKTLMPVEVPNVS--EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235 (286)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP 235 (286)
..|.... .+....+....+..++ ....+.+|+.+++++|+++.+|..+..+++|++|++++|.++ .+|
T Consensus 210 --~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~--~~~ 279 (330)
T 1xku_A 210 --ASLKGLN------NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS--AIG 279 (330)
T ss_dssp --GGGTTCT------TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC--CCC
T ss_pred --HHhcCCC------CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC--ccC
Confidence 1122211 1111111111111111 124577899999999999999988999999999999999994 576
Q ss_pred CCCcc
Q 023142 236 ADLKI 240 (286)
Q Consensus 236 ~~~~~ 240 (286)
...+.
T Consensus 280 ~~~f~ 284 (330)
T 1xku_A 280 SNDFC 284 (330)
T ss_dssp TTSSS
T ss_pred hhhcC
Confidence 65543
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1.3e-20 Score=168.47 Aligned_cols=180 Identities=17% Similarity=0.195 Sum_probs=149.7
Q ss_pred HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142 8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL 87 (286)
Q Consensus 8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 87 (286)
.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++.+..+++|+.|++++|.++.+++ +..+
T Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~ 220 (347)
T 4fmz_A 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANM 220 (347)
T ss_dssp TCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGC
T ss_pred CcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcC
Confidence 34556668899999999999999998876 66799999999999999988778899999999999999998865 5688
Q ss_pred CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchh
Q 023142 88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEM 167 (286)
Q Consensus 88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 167 (286)
++|++|++++|.++.+++ +..+++|++|++++|.++.++ .+..+++|++|++++|.+.+++
T Consensus 221 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~----------- 281 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISDIN-----AVKDLTKLKMLNVGSNQISDIS----------- 281 (347)
T ss_dssp TTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEECCSSCCCCCG-----------
T ss_pred CcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCCCh-----hHhcCCCcCEEEccCCccCCCh-----------
Confidence 999999999999998865 888999999999999999875 4788999999999999765321
Q ss_pred HHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHh
Q 023142 168 EEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
....+.+|+.+++++|+++ ..|..++.+++|++|++++|.+.
T Consensus 282 ---------------------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 282 ---------------------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp ---------------------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred ---------------------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 0113557888888888887 45577888888888888888884
No 48
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=2.2e-20 Score=169.85 Aligned_cols=91 Identities=11% Similarity=0.057 Sum_probs=57.9
Q ss_pred HHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccCCccCCCCHHHHHHHHHHH
Q 023142 135 VIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQIIAIKAAI 213 (286)
Q Consensus 135 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~~ip~~i 213 (286)
.+..+++|+.|++++|.+..... ..|.... .+....+....+..++.. ..+++|+.+++++|+++.+|..+
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~------~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 314 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMY--HPFVKMQ------RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 314 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEES--GGGTTCS------SCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH
T ss_pred HHcCCCCccEEECCCCcCCCcCh--hHccccc------cCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccc
Confidence 36778889999999988654310 1122211 111111111111111111 34678999999999999999889
Q ss_pred HhcCCHHHHHHHHHHHhcCCCC
Q 023142 214 VNSQTLEEVARLEKVLKSGQLP 235 (286)
Q Consensus 214 ~~~~~L~~l~l~~N~l~~g~iP 235 (286)
+.+++|++|++++|.+. .+|
T Consensus 315 ~~l~~L~~L~L~~N~i~--~~~ 334 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIV--TLK 334 (390)
T ss_dssp HHHTTCSEEECCSSCCC--CCC
T ss_pred cccCcCCEEECCCCccc--eeC
Confidence 99999999999999994 455
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=3.9e-21 Score=185.88 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=136.0
Q ss_pred cCCCCCccEEEeeCCCCc-cccccccCCCCcCEEeccCCCCCCCC-CCCCCCC-CCeEeccCCcCcccCCccccCC--CC
Q 023142 15 FFNAIKERELDLRGNKIA-VIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNR-LGTLIINNNRITRINPNIGEFL--PK 89 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~-L~~L~Ls~N~l~~l~~~~~~~l--~~ 89 (286)
+.++++|+.|++++|+++ .+| .+..+++|++|++++|.++.+| .+..+++ |++|++++|+++.+|..+ ..+ ++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~-~~~~l~~ 403 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF-DAKSVSV 403 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC-CTTCSSC
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh-hhcccCc
Confidence 666667777777777776 666 5556667777777777766665 5666777 777777777777665433 333 36
Q ss_pred ccEEEeecCcCCCCCCCccCC-------CCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHh
Q 023142 90 LHTLVLTNNRLVNLVEIDPLT-------SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLF 162 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~-------~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 162 (286)
|++|++++|.|++..+ ..+. .+++|++|++++|.++.+|.. .+..+++|++|++++|.+..++. ..|
T Consensus 404 L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~~l~~L~~L~Ls~N~l~~i~~--~~~ 477 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFPKE---LFSTGSPLSSINLMGNMLTEIPK--NSL 477 (636)
T ss_dssp EEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH---HHHTTCCCSEEECCSSCCSBCCS--SSS
T ss_pred cCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCCHH---HHccCCCCCEEECCCCCCCCcCH--HHh
Confidence 7777777777776544 3455 666788888888888877763 45567888888888887663321 111
Q ss_pred hcchh-HHHHHhhhcccCCCCCCCCCChh-h--hccCCccCCCCHHHHHHHHHHHHhcCCHHHHHH------HHHHHhcC
Q 023142 163 ASEEM-EEEAKKESMKTLMPVEVPNVSEE-E--EQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVAR------LEKVLKSG 232 (286)
Q Consensus 163 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l------~~N~l~~g 232 (286)
..... ......+....+....+..+|.. . .+.+|+.+++++|+++.+|..++++++|++|++ ++|.+ .|
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l-~~ 556 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT-LR 556 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC-CC
T ss_pred ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc-cc
Confidence 11100 00000111111111222223322 2 566777777777777777777777777777777 34555 36
Q ss_pred CCCCCCccCCCCCCCcc
Q 023142 233 QLPADLKIPDYDSGSKD 249 (286)
Q Consensus 233 ~iP~~~~~~~~~~~~~~ 249 (286)
.+|..+........++.
T Consensus 557 ~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 557 EWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CCCTTGGGCSSCCEEEC
T ss_pred cChHHHhcCCCCCEEEC
Confidence 67777666554444443
No 50
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.8e-22 Score=172.78 Aligned_cols=177 Identities=17% Similarity=0.232 Sum_probs=150.5
Q ss_pred hCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 10 WKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 10 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
.+...+..+++|+.|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++. +..+++
T Consensus 37 ~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~ 113 (291)
T 1h6t_A 37 TDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKK 113 (291)
T ss_dssp TSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG--GTTCTT
T ss_pred ccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh--hccCCC
Confidence 344445567889999999999998876 56699999999999999988779999999999999999999854 578999
Q ss_pred ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHH
Q 023142 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEE 169 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 169 (286)
|++|++++|.|+.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+..+..
T Consensus 114 L~~L~L~~n~i~~~~---~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~~------------ 173 (291)
T 1h6t_A 114 LKSLSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP------------ 173 (291)
T ss_dssp CCEEECTTSCCCCCG---GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG------------
T ss_pred CCEEECCCCcCCCCh---hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCccccchh------------
Confidence 999999999999874 4888999999999999999884 58899999999999998653210
Q ss_pred HHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 170 EAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
...+.+|+.+++++|.++.+|. +..+++|+.|++++|.+.
T Consensus 174 --------------------l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 --------------------LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECL 213 (291)
T ss_dssp --------------------GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred --------------------hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCccc
Confidence 1136689999999999998864 899999999999999985
No 51
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.78 E-value=2.1e-19 Score=141.62 Aligned_cols=133 Identities=26% Similarity=0.401 Sum_probs=118.7
Q ss_pred CCCCccEEEeeCCCCc--cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 17 NAIKERELDLRGNKIA--VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
.+++|+.|++++|.++ .+|..+..+++|++|++++|.++.++.+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3478999999999999 89988888999999999999999888899999999999999999995566666799999999
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCC
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKK 149 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~ 149 (286)
+++|.|++++.+..+..+++|++|++++|+++.++.++...+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999975224789999999999999999999885555799999999999864
No 52
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=1.8e-20 Score=174.54 Aligned_cols=142 Identities=21% Similarity=0.273 Sum_probs=107.6
Q ss_pred CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142 5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG 84 (286)
Q Consensus 5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 84 (286)
....+...+.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.+++ +
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~ 130 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--L 130 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--G
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--H
Confidence 33445556667788899999999999888877 77788899999999988887668888899999999998888865 5
Q ss_pred cCCCCccEEEeecCcCCCCCCC------------------ccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEe
Q 023142 85 EFLPKLHTLVLTNNRLVNLVEI------------------DPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLD 146 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~~~~------------------~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~ 146 (286)
..+++|++|++++|.++.++.+ ..+.++++|+.|++++|.+..++. +..+++|++|+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~ 205 (466)
T 1o6v_A 131 KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-----LAKLTNLESLI 205 (466)
T ss_dssp TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGCTTCSEEE
T ss_pred cCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-----hccCCCCCEEE
Confidence 6888888888888888776431 124566677777777777776643 56777777777
Q ss_pred CCCCChHH
Q 023142 147 FKKVKNKE 154 (286)
Q Consensus 147 l~~n~~~~ 154 (286)
+++|.+..
T Consensus 206 l~~n~l~~ 213 (466)
T 1o6v_A 206 ATNNQISD 213 (466)
T ss_dssp CCSSCCCC
T ss_pred ecCCcccc
Confidence 77776543
No 53
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=1.8e-21 Score=182.62 Aligned_cols=211 Identities=19% Similarity=0.150 Sum_probs=126.9
Q ss_pred CCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 17 NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
.+++|+.|+|++|.|+.++ ..+..+++|++|+|++|.++.++.|..+++|++|+|++|.|+++++. ++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-----PSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence 3457888888888888665 56777888888888888887665577788888888888887776532 45555666
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKES 175 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (286)
++|.|+.++. . .+++|+.|++++|.++.++.. .++.+++|++|++++|.+...... .++..+ ..+.
T Consensus 107 ~~N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~~l------~~L~ 172 (487)
T 3oja_A 107 ANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFA-ELAASS------DTLE 172 (487)
T ss_dssp CSSCCCCEEE-C---CCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCCCEEEGG-GGGGGT------TTCC
T ss_pred cCCcCCCCCc-c---ccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCCCCcChH-HHhhhC------Cccc
Confidence 6665555443 1 234555555555555544322 345555555555555554321100 000000 0111
Q ss_pred cccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCc
Q 023142 176 MKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSK 248 (286)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~ 248 (286)
...+....+..++....+.+|+.+++++|.|+.+|+.++.+++|+.|++++|.+. .||..+........++
T Consensus 173 ~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~l~~l~~L~~L~ 243 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFD 243 (487)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEE
T ss_pred EEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc--ccchhhccCCCCCEEE
Confidence 1111111111111222366888999999999988888888999999999999984 4887765544433333
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.3e-21 Score=173.09 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=84.3
Q ss_pred CCCcCEEeccCCCCC-CCC-CC--CCCCCCCeEeccCCcCcccCCccccCC-----CCccEEEeecCcCCCCCCCccCCC
Q 023142 41 EDQFDTIDLSDNEIV-KLE-NM--PHLNRLGTLIINNNRITRINPNIGEFL-----PKLHTLVLTNNRLVNLVEIDPLTS 111 (286)
Q Consensus 41 l~~L~~L~Ls~N~l~-~i~-~~--~~l~~L~~L~Ls~N~l~~l~~~~~~~l-----~~L~~L~Ls~N~i~~~~~~~~l~~ 111 (286)
+++|++|++++|.++ .+| .+ ..+++|++|++++|+++++| ..+..+ ++|++|++++|+|+.+++ ..|++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhcc
Confidence 455555555555554 233 22 44555555555555555542 222233 455555555555555543 34555
Q ss_pred CCCccEEEecCCcCCCC---CCchHHHH--hhCCCCcEEeCCCCChHHHHHHH-HHhhcchhHHHHHhhhcccCCCCCCC
Q 023142 112 LPKLQFLSLLDNSITKK---PNYRLYVI--HKLKSLRVLDFKKVKNKERMEAA-SLFASEEMEEEAKKESMKTLMPVEVP 185 (286)
Q Consensus 112 l~~L~~L~L~~N~l~~i---p~~~~~~l--~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (286)
+++|++|++++|++... +. .+ ..+++|++|++++|.+...+... ..|........+. +..+.+.....
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~-Ls~N~l~~~~~- 245 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLIS----ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD-LSHNSLRDAAG- 245 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHH----HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEE-CTTSCCCSSCC-
T ss_pred CCCCCEEECCCCCcCcchHHHH----HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEE-CCCCcCCcccc-
Confidence 55555555555554321 11 11 44455555555555544221111 1111111000000 00000000000
Q ss_pred CCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142 186 NVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPA 236 (286)
Q Consensus 186 ~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~ 236 (286)
.+....+.+|+.+++++|+|+.+|..+. ++|++|++++|.++ .+|.
T Consensus 246 -~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~--~~p~ 291 (312)
T 1wwl_A 246 -APSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD--RNPS 291 (312)
T ss_dssp -CSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC--SCCC
T ss_pred -hhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC--CChh
Confidence 0001235678888888888887776665 77888888888884 3454
No 55
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=5.6e-21 Score=184.81 Aligned_cols=212 Identities=13% Similarity=0.111 Sum_probs=117.5
Q ss_pred CcCCCCCccEEEeeCCCCccccccccCCCC-cCEEeccCCCCCCCC-CCCCC--CCCCeEeccCCcCcccCCcccc----
Q 023142 14 HFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHL--NRLGTLIINNNRITRINPNIGE---- 85 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l--~~L~~L~Ls~N~l~~l~~~~~~---- 85 (286)
.+.++++|+.|++++|+++.+|..+..+++ |++|++++|.++.+| .+..+ ++|++|++++|++++..+..+.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 555566666666666666666655555666 666666666666555 23332 2566666666665554443333
Q ss_pred ---CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhC-------CCCcEEeCCCCChHHH
Q 023142 86 ---FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKL-------KSLRVLDFKKVKNKER 155 (286)
Q Consensus 86 ---~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l-------~~L~~L~l~~n~~~~~ 155 (286)
.+++|++|++++|.|+.+|. ..+..+++|++|++++|.++.+|.. .+... ++|+.|++++|.+..+
T Consensus 428 ~~~~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i~~~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~l 503 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKN---SLKDENENFKNTYLLTSIDLRFNKLTKL 503 (636)
T ss_dssp SCCCCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBCCSS---SSEETTEECTTGGGCCEEECCSSCCCBC
T ss_pred ccccCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCcCHH---HhccccccccccCCccEEECcCCcCCcc
Confidence 44455666666665555554 3344455555555555555555542 11211 1555555555554432
Q ss_pred HHHHHHh-hcchhHHHHHhhhcccCCCCCCCCCC-hhhhccCCccCCCC------HHHHH-HHHHHHHhcCCHHHHHHHH
Q 023142 156 MEAASLF-ASEEMEEEAKKESMKTLMPVEVPNVS-EEEEQQTPKVVAPT------PEQII-AIKAAIVNSQTLEEVARLE 226 (286)
Q Consensus 156 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ls------~n~l~-~ip~~i~~~~~L~~l~l~~ 226 (286)
+.. ++ .... .+....+....+..+| ....+.+|+.++++ +|++. .+|..++++++|++|++++
T Consensus 504 p~~--~~~~~l~------~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 575 (636)
T 4eco_A 504 SDD--FRATTLP------YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575 (636)
T ss_dssp CGG--GSTTTCT------TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred Chh--hhhccCC------CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence 210 00 0000 0001111111111121 22467789999884 46655 7888999999999999999
Q ss_pred HHHhcCCCCCCCc
Q 023142 227 KVLKSGQLPADLK 239 (286)
Q Consensus 227 N~l~~g~iP~~~~ 239 (286)
|.+ +.||..+.
T Consensus 576 N~l--~~ip~~~~ 586 (636)
T 4eco_A 576 NDI--RKVNEKIT 586 (636)
T ss_dssp SCC--CBCCSCCC
T ss_pred CcC--CccCHhHh
Confidence 999 68998766
No 56
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=6.9e-21 Score=189.27 Aligned_cols=221 Identities=14% Similarity=0.105 Sum_probs=122.9
Q ss_pred HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCC-cCEEeccCCCCCCCC-CCCCCC--CCCeEeccCCcCcccCCcc
Q 023142 8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQ-FDTIDLSDNEIVKLE-NMPHLN--RLGTLIINNNRITRINPNI 83 (286)
Q Consensus 8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~-L~~L~Ls~N~l~~i~-~~~~l~--~L~~L~Ls~N~l~~l~~~~ 83 (286)
.+...+.|.++++|+.|++++|+++.+|..+..+++ |++|+|++|.++.+| .+..++ +|+.|++++|++++.++.+
T Consensus 584 ~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 584 KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp CCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred CcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 333333555556666666666666655555555555 666666666665554 233222 2555555555554432211
Q ss_pred c---c--CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHH----HhhCCCCcEEeCCCCChHH
Q 023142 84 G---E--FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYV----IHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 84 ~---~--~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~----l~~l~~L~~L~l~~n~~~~ 154 (286)
. . .+++|+.|++++|.|+.+|. ..+..+++|+.|+|++|+++.+|...+.. +..+++|+.|++++|.+..
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred hhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 1 1 22367777777777776665 34456777777777777777776631100 0122377777777777653
Q ss_pred HHHHHHHh-hcchhHHHHHhhhcccCCCCCCCCCC-hhhhccCCccCCCCH------HHHH-HHHHHHHhcCCHHHHHHH
Q 023142 155 RMEAASLF-ASEEMEEEAKKESMKTLMPVEVPNVS-EEEEQQTPKVVAPTP------EQII-AIKAAIVNSQTLEEVARL 225 (286)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~ls~------n~l~-~ip~~i~~~~~L~~l~l~ 225 (286)
++... + .... .+....+....+..+| ....+.+|+.+++++ |++. .+|..|+++++|++|+++
T Consensus 743 lp~~l--~~~~l~------~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 743 LSDDF--RATTLP------YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CCGGG--STTTCT------TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred chHHh--hhccCC------CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 32111 0 0111 1111111111111122 224677888888865 5555 778888888888888888
Q ss_pred HHHHhcCCCCCCCc
Q 023142 226 EKVLKSGQLPADLK 239 (286)
Q Consensus 226 ~N~l~~g~iP~~~~ 239 (286)
+|.+ +.||..+.
T Consensus 815 ~N~L--~~Ip~~l~ 826 (876)
T 4ecn_A 815 SNDI--RKVDEKLT 826 (876)
T ss_dssp SSCC--CBCCSCCC
T ss_pred CCCC--CccCHhhc
Confidence 8888 67888765
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=4.5e-21 Score=168.76 Aligned_cols=199 Identities=15% Similarity=0.194 Sum_probs=150.1
Q ss_pred ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccC--CccccCCCCccEEEee
Q 023142 21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRIN--PNIGEFLPKLHTLVLT 96 (286)
Q Consensus 21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls 96 (286)
-+.++++++.++.+|..+ .++|++|++++|.++.+| .|..+++|++|++++|+++.+. +..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 367899999999999755 378999999999999997 3799999999999999998763 2334578999999999
Q ss_pred cCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhc
Q 023142 97 NNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESM 176 (286)
Q Consensus 97 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (286)
+|.++.++. .+..+++|++|++++|.++.++... .+..+++|++|++++|.+..... ..|........+. +..
T Consensus 87 ~n~i~~l~~--~~~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~-l~~ 159 (306)
T 2z66_A 87 FNGVITMSS--NFLGLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTHTRVAFN--GIFNGLSSLEVLK-MAG 159 (306)
T ss_dssp SCSEEEEEE--EEETCTTCCEEECTTSEEESSTTTT--TTTTCTTCCEEECTTSCCEECST--TTTTTCTTCCEEE-CTT
T ss_pred CCccccChh--hcCCCCCCCEEECCCCcccccccch--hhhhccCCCEEECCCCcCCccch--hhcccCcCCCEEE-CCC
Confidence 999998876 6889999999999999999876411 57899999999999998653211 1122211110000 001
Q ss_pred cc----CCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142 177 KT----LMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPA 236 (286)
Q Consensus 177 ~~----~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~ 236 (286)
.. ..+..+ ..+.+|+.+++++|+++.+ |..++.+++|++|++++|.+. .+|.
T Consensus 160 n~l~~~~~~~~~------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~ 216 (306)
T 2z66_A 160 NSFQENFLPDIF------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--SLDT 216 (306)
T ss_dssp CEEGGGEECSCC------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--BCCS
T ss_pred CccccccchhHH------hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--ccCh
Confidence 11 112222 3577899999999999866 578889999999999999984 3544
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=8.8e-19 Score=144.74 Aligned_cols=140 Identities=15% Similarity=0.173 Sum_probs=91.2
Q ss_pred CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCC--CCCCCCCCCCCeEeccCCcCcccCCc
Q 023142 5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LENMPHLNRLGTLIINNNRITRINPN 82 (286)
Q Consensus 5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~l~~L~~L~Ls~N~l~~l~~~ 82 (286)
+.+.|.+.+.+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+.+..+++|++|++++|++++..+.
T Consensus 52 ~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 130 (197)
T 4ezg_A 52 ANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130 (197)
T ss_dssp ESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred cCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence 3344445445666777777777777666555 34456777777777777764 34667777777777777777764445
Q ss_pred cccCCCCccEEEeecCc-CCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 83 IGEFLPKLHTLVLTNNR-LVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 83 ~~~~l~~L~~L~Ls~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
.+..+++|++|++++|. ++.++ .+..+++|++|++++|+++.++. +..+++|++|++++|++.
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~~-----l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRG-----IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCTT-----GGGCSSCCEEEECBC---
T ss_pred HHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChHH-----hccCCCCCEEEeeCcccC
Confidence 55667777777777776 66654 36667777777777777776653 567777777777777653
No 59
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=2.5e-20 Score=172.46 Aligned_cols=119 Identities=18% Similarity=0.201 Sum_probs=85.3
Q ss_pred CCCcCCCCCccEEEeeCCCCc-ccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcc--cCCcccc
Q 023142 12 SPHFFNAIKERELDLRGNKIA-VIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITR--INPNIGE 85 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~-~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~--l~~~~~~ 85 (286)
+..|.++++|++|++++|.+. .++ ..+..+++|++|+|++|.++.+ | .|..+++|++|++++|++++ +....+.
T Consensus 47 ~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 126 (455)
T 3v47_A 47 ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK 126 (455)
T ss_dssp TTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred hhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence 455777778888888888776 453 5567778888888888887765 3 57778888888888888776 2234466
Q ss_pred CCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 86 FLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 86 ~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
.+++|++|++++|.|+.+.+...+.++++|++|++++|.++.++.
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 777888888888888777542237778888888888887775533
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.77 E-value=2e-21 Score=171.66 Aligned_cols=183 Identities=15% Similarity=0.094 Sum_probs=93.5
Q ss_pred CCccEEEeeCCCCc-cccccc--cCCCCcCEEeccCCCCCCC-C-----CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 19 IKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKL-E-----NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~-~l~~~~--~~l~~L~~L~Ls~N~l~~i-~-----~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
++|++|++++|.++ .+|..+ ..+++|++|++++|.++.. + .+..+++|++|++++|+++.+++..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 34555555555554 233333 4455555555555555531 1 1234555555555555555555444455555
Q ss_pred ccEEEeecCcCCC---CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142 90 LHTLVLTNNRLVN---LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE 166 (286)
Q Consensus 90 L~~L~Ls~N~i~~---~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 166 (286)
|++|++++|++.+ ++....+..+++|++|++++|.++.++......+..+++|++|++++|.+...
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~----------- 239 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT----------- 239 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-----------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-----------
Confidence 5555555555433 21111234455555555555555444332111234555555555555543211
Q ss_pred hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
.|..+. ....+.+|+.+++++|+|+.+|..+. ++|++|++++|.++
T Consensus 240 -------------~p~~~~---~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 240 -------------VNPSAP---RCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp -------------CCSCCS---SCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC
T ss_pred -------------chhhHH---hccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC
Confidence 111111 00012478888888888888877664 78888888888884
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1e-20 Score=168.62 Aligned_cols=216 Identities=19% Similarity=0.189 Sum_probs=158.8
Q ss_pred cCHHHHhC--CCCcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCccc
Q 023142 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRI 79 (286)
Q Consensus 4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l 79 (286)
++.+.|.. +..|.++++|++|++++|.++.+ |..+..+++|++|++++|.++.+| .+. ++|++|++++|+++.+
T Consensus 61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~ 138 (332)
T 2ft3_A 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKV 138 (332)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCC
T ss_pred CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCcc
Confidence 34444444 34689999999999999999977 578888999999999999999987 343 8999999999999999
Q ss_pred CCccccCCCCccEEEeecCcCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHH
Q 023142 80 NPNIGEFLPKLHTLVLTNNRLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERME 157 (286)
Q Consensus 80 ~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 157 (286)
++..|..+++|++|++++|.++. +.+ ..+..+ +|+.|++++|.++.+|.. + .++|+.|++++|.+.....
T Consensus 139 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~ 210 (332)
T 2ft3_A 139 PKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELHLDHNKIQAIEL 210 (332)
T ss_dssp CSGGGSSCSSCCEEECCSCCCBGGGSCT-TSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCBCCSSCCCCCCT
T ss_pred CHhHhCCCccCCEEECCCCccccCCCCc-ccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEECCCCcCCccCH
Confidence 98888899999999999999964 443 467777 888888888888888763 2 2678888888887654310
Q ss_pred HHHHhhcchhHHHHHhhhcccCCCCCCCCCC--hhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142 158 AASLFASEEMEEEAKKESMKTLMPVEVPNVS--EEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235 (286)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP 235 (286)
..|.... .+....+....+..++ ....+.+|+.+++++|+++.+|..++.+++|++|++++|.++ .+|
T Consensus 211 --~~l~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~--~~~ 280 (332)
T 2ft3_A 211 --EDLLRYS------KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT--KVG 280 (332)
T ss_dssp --TSSTTCT------TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC--BCC
T ss_pred --HHhcCCC------CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC--ccC
Confidence 0111111 1111112222222222 124677888899999988888888888899999999988883 466
Q ss_pred CCCc
Q 023142 236 ADLK 239 (286)
Q Consensus 236 ~~~~ 239 (286)
...+
T Consensus 281 ~~~~ 284 (332)
T 2ft3_A 281 VNDF 284 (332)
T ss_dssp TTSS
T ss_pred hhHc
Confidence 5444
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=1.4e-21 Score=173.24 Aligned_cols=213 Identities=19% Similarity=0.130 Sum_probs=139.5
Q ss_pred CCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 16 FNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
..+++|++|++++|+++.++ ..+..+++|++|++++|.++.++.+..+++|++|++++|++++++. +++|++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~ 105 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC-----CCCcCEEE
Confidence 44678999999999999876 6788899999999999999977668899999999999999987752 25666666
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE 174 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
+++|.|+.++. . .+++|+.|++++|+++.++.. .+..+++|++|++++|.+....... ++... ..+
T Consensus 106 l~~n~l~~~~~-~---~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l------~~L 171 (317)
T 3o53_A 106 AANNNISRVSC-S---RGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNFAE-LAASS------DTL 171 (317)
T ss_dssp CCSSCCSEEEE-C---CCSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTSCCCEEEGGG-GGGGT------TTC
T ss_pred CCCCccCCcCc-c---ccCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCCCCCcccHHH-Hhhcc------CcC
Confidence 66666665543 1 245566666666666655433 3455566666666666544321000 00000 011
Q ss_pred hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCCCCCCcc
Q 023142 175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPADLKIPDYDSGSKD 249 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~~~~~~~ 249 (286)
....+....+..++....+.+|+.+++++|+++.+|+.+..+++|++|++++|.+. .+|..+........++.
T Consensus 172 ~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDL 244 (317)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEEC
T ss_pred CEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEc
Confidence 11111111111111222366899999999999988888889999999999999984 58877655544444433
No 63
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=2.2e-20 Score=173.99 Aligned_cols=195 Identities=21% Similarity=0.226 Sum_probs=107.3
Q ss_pred CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEE
Q 023142 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTL 93 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 93 (286)
.+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.+..+++|+.|++++|+++++++ +..+++|+.|
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 270 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEE
Confidence 34444444445554444444333 33355555555555555555555555666666666666665544 3456666666
Q ss_pred EeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142 94 VLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK 173 (286)
Q Consensus 94 ~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 173 (286)
++++|.++.+++ +..+++|+.|++++|++..++. +..+++|+.|++++|.+..... +... ..
T Consensus 271 ~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~~~~----~~~l------~~ 332 (466)
T 1o6v_A 271 KLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISDISP----VSSL------TK 332 (466)
T ss_dssp ECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSCCGG----GGGC------TT
T ss_pred ECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCCchh----hccC------cc
Confidence 666666665543 5566666666666666665543 4566677777777766543321 1111 11
Q ss_pred hhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 174 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
+....+....+..++....+.+|+.+++++|+++.+++ +..+++|++|++.+|.+.
T Consensus 333 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 333 LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred CCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 11112222222223334556677777777777774444 677777777777777774
No 64
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=6.6e-21 Score=182.61 Aligned_cols=191 Identities=16% Similarity=0.118 Sum_probs=122.7
Q ss_pred CcCCCCCccEEEeeCCCCccc---cccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCC-ccccCCC
Q 023142 14 HFFNAIKERELDLRGNKIAVI---ENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINP-NIGEFLP 88 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l---~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~ 88 (286)
.+..+++|+.|++++|.++.+ +..+..+++|++|++++|.++.+| .+..+++|+.|++++|+++++++ ..+..++
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 455666667777777766644 455556677777777777776665 56677777777777777776655 4556677
Q ss_pred CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE 166 (286)
Q Consensus 89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 166 (286)
+|++|++++|.++...+ ..+.++++|++|++++|+++. +|. .+..+++|+.|++++|.+...
T Consensus 425 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----------- 488 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSN----VFANTTNLTFLDLSKCQLEQI----------- 488 (606)
T ss_dssp TCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECS----CCTTCTTCCEEECTTSCCCEE-----------
T ss_pred cCCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCcchHH----hhccCCCCCEEECCCCcCCcc-----------
Confidence 77777777777766554 466677777777777777764 344 466677777777777764321
Q ss_pred hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhcCCCCCCCccC
Q 023142 167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAI-KAAIVNSQTLEEVARLEKVLKSGQLPADLKIP 241 (286)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~i-p~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~ 241 (286)
.+..+ ..+.+|+.+++++|+++.+ |..++.+++|++|++++|.++ .+|..+...
T Consensus 489 -------------~~~~~------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p~~~~~l 543 (606)
T 3vq2_A 489 -------------SWGVF------DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSKGILQHF 543 (606)
T ss_dssp -------------CTTTT------TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEESCGGGS
T ss_pred -------------Chhhh------cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccCHhHhhh
Confidence 11111 2355677777777777744 566777777777777777773 566664444
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=4.3e-19 Score=146.63 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=128.0
Q ss_pred cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
...+++|+.|++++|.++.+| .+..+++|++|++++|.++.++.+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345678999999999999998 5677999999999999998888899999999999999999985556678999999999
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHh
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKK 173 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 173 (286)
+++|.|+...+ ..+..+++|++|++++|+ ++.++. +..+++|++|++++|.+..++
T Consensus 119 Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~-----l~~l~~L~~L~l~~n~i~~~~----------------- 175 (197)
T 4ezg_A 119 ISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMP-----LKTLPELKSLNIQFDGVHDYR----------------- 175 (197)
T ss_dssp CCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGG-----GGGCSSCCEEECTTBCCCCCT-----------------
T ss_pred ecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHh-----hcCCCCCCEEECCCCCCcChH-----------------
Confidence 99999997443 478899999999999998 888864 789999999999999754321
Q ss_pred hhcccCCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142 174 ESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA 208 (286)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ 208 (286)
....+.+|+.+++++|+|..
T Consensus 176 ---------------~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 ---------------GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ---------------TGGGCSSCCEEEECBC----
T ss_pred ---------------HhccCCCCCEEEeeCcccCC
Confidence 11236678899998888753
No 66
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=4.1e-20 Score=183.75 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=121.3
Q ss_pred cCCCCCccEEEeeCCCCccccc--cccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCC-cc
Q 023142 15 FFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPK-LH 91 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~-L~ 91 (286)
+..+++|+.|++++|+++.+|. .+..+++|+.|+|++|.++.+|.|+.+++|+.|+|++|+++.+|..+ ..+++ |+
T Consensus 544 ~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l-~~l~~~L~ 622 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDF-CAFTDQVE 622 (876)
T ss_dssp TTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTS-CEECTTCC
T ss_pred ccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHH-hhccccCC
Confidence 4445566666666666666665 56666666666666666666666666666666666666666555443 35555 66
Q ss_pred EEEeecCcCCCCCCCccCCCC-------------------------------CCccEEEecCCcCCCCCCchHHHHhhCC
Q 023142 92 TLVLTNNRLVNLVEIDPLTSL-------------------------------PKLQFLSLLDNSITKKPNYRLYVIHKLK 140 (286)
Q Consensus 92 ~L~Ls~N~i~~~~~~~~l~~l-------------------------------~~L~~L~L~~N~l~~ip~~~~~~l~~l~ 140 (286)
.|++++|.|+.+|. .+..+ ++|+.|++++|.++.+|.. .+..++
T Consensus 623 ~L~Ls~N~L~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~---~~~~l~ 697 (876)
T 4ecn_A 623 GLGFSHNKLKYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE---LFATGS 697 (876)
T ss_dssp EEECCSSCCCSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH---HHHTTC
T ss_pred EEECcCCCCCcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH---HHccCC
Confidence 66666666665543 23222 3555555665555555542 334566
Q ss_pred CCcEEeCCCCChHHHHHHHHHhhcchh-HHHHHhhhcccCCCCCCCCCChh-h--hccCCccCCCCHHHHHHHHHHHHhc
Q 023142 141 SLRVLDFKKVKNKERMEAASLFASEEM-EEEAKKESMKTLMPVEVPNVSEE-E--EQQTPKVVAPTPEQIIAIKAAIVNS 216 (286)
Q Consensus 141 ~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~l~~l~ls~n~l~~ip~~i~~~ 216 (286)
+|+.|++++|.+..++. ..|....+ ...+..+....+....+..+|.. . .+.+|+.+++++|+|+.+|..++.+
T Consensus 698 ~L~~L~Ls~N~L~~ip~--~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L 775 (876)
T 4ecn_A 698 PISTIILSNNLMTSIPE--NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS 775 (876)
T ss_dssp CCSEEECCSCCCSCCCT--TSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC
T ss_pred CCCEEECCCCcCCccCh--HHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcC
Confidence 66666666666543221 11111100 00000111111111122223332 2 4667777777777777777777777
Q ss_pred CCHHHHHHHH------HHHhcCCCCCCCccCCCCCCCcc
Q 023142 217 QTLEEVARLE------KVLKSGQLPADLKIPDYDSGSKD 249 (286)
Q Consensus 217 ~~L~~l~l~~------N~l~~g~iP~~~~~~~~~~~~~~ 249 (286)
++|+.|++++ |.+ .+.+|..+........++.
T Consensus 776 ~~L~~L~Ls~N~~ls~N~l-~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 776 SQLKAFGIRHQRDAEGNRI-LRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp TTCCEEECCCCBCTTCCBC-CCCCCTTGGGCSSCCEEEC
T ss_pred CCCCEEECCCCCCcccccc-cccChHHHhcCCCCCEEEC
Confidence 7777777755 555 2567766665554444443
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.5e-18 Score=144.66 Aligned_cols=152 Identities=21% Similarity=0.261 Sum_probs=131.1
Q ss_pred ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142 21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (286)
Q Consensus 21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 98 (286)
-+.++++++.++.+|..+. ++++.|++++|.|+.++ .|..+++|+.|+|++|+|+.+.+..|.++++|++|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3689999999999997653 78999999999999886 6899999999999999999998888899999999999999
Q ss_pred cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhccc
Q 023142 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKT 178 (286)
Q Consensus 99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (286)
.|+.+++ ..|.++++|++|+|++|.++.++.. .+..+++|++|++++|.+..++
T Consensus 91 ~l~~l~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~---------------------- 144 (220)
T 2v9t_B 91 KITELPK-SLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIA---------------------- 144 (220)
T ss_dssp CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCC----------------------
T ss_pred cCCccCH-hHccCCCCCCEEECCCCCCCEeCHH---HcCCCCCCCEEECCCCcCCEEC----------------------
Confidence 9999987 6789999999999999999988654 6889999999999999864321
Q ss_pred CCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142 179 LMPVEVPNVSEEEEQQTPKVVAPTPEQIIA 208 (286)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ 208 (286)
+..+ ..+.+|+.+++++|.+.+
T Consensus 145 --~~~~------~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 145 --KGTF------SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp --TTTT------TTCTTCCEEECCSSCEEC
T ss_pred --HHHH------hCCCCCCEEEeCCCCcCC
Confidence 1111 135678999999998763
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.76 E-value=3.8e-20 Score=177.33 Aligned_cols=223 Identities=16% Similarity=0.084 Sum_probs=152.4
Q ss_pred cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCc-ccCCccccCCCCcc
Q 023142 15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLH 91 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~ 91 (286)
|.++++|++|++++|+++.+|..+..+++|++|++++|.++.+ + .+..+++|++|++++|.+. .+++..+..+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 7778888888888888888887777788888888888888876 3 6778888888888888877 56666677888888
Q ss_pred EEEeecCcCCCCC--CCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHH
Q 023142 92 TLVLTNNRLVNLV--EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEE 169 (286)
Q Consensus 92 ~L~Ls~N~i~~~~--~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 169 (286)
+|++++|.++.+. + ..+..+++|++|++++|.+..++.. .+..+++|+.|++++|.+...... ..|....
T Consensus 354 ~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~--- 425 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCN-LQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFTRLKVKDAQ-SPFQNLH--- 425 (606)
T ss_dssp EEECCSSCCCEEEEST-TTTTTCTTCCEEECCSCSCEEECTT---TTTTCTTCSEEECTTCCEECCTTC-CTTTTCT---
T ss_pred EEECCCCccccccCcc-hhcccCCCCCEEECCCCcCCcCCHH---HhcCCccCCeEECCCCcCCCcccc-hhhhCcc---
Confidence 8888888887764 3 3677888888888888888766443 577888888888888876432100 0111111
Q ss_pred HHHhhhcccCCCCCCCCC-Ch-hhhccCCccCCCCHHHHHH--HH--HHHHhcCCHHHHHHHHHHHhcCCCCCCCccCCC
Q 023142 170 EAKKESMKTLMPVEVPNV-SE-EEEQQTPKVVAPTPEQIIA--IK--AAIVNSQTLEEVARLEKVLKSGQLPADLKIPDY 243 (286)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~l~~l~ls~n~l~~--ip--~~i~~~~~L~~l~l~~N~l~~g~iP~~~~~~~~ 243 (286)
.+....+....+... +. ...+.+|+.+++++|+++. ++ ..+..+++|++|++++|.+. +.+|..+.....
T Consensus 426 ---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 501 (606)
T 3t6q_A 426 ---LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS-SIDQHAFTSLKM 501 (606)
T ss_dssp ---TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred ---cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC-ccChhhhccccC
Confidence 111111111111110 11 1357788999999998874 22 46788899999999999884 455666665554
Q ss_pred CCCCcc
Q 023142 244 DSGSKD 249 (286)
Q Consensus 244 ~~~~~~ 249 (286)
...++.
T Consensus 502 L~~L~L 507 (606)
T 3t6q_A 502 MNHVDL 507 (606)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 444444
No 69
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=140.63 Aligned_cols=126 Identities=21% Similarity=0.259 Sum_probs=116.1
Q ss_pred cEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcC
Q 023142 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRL 100 (286)
Q Consensus 22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i 100 (286)
+.+++++|.++.+|..+ .++|++|++++|.|+.+| .|..+++|+.|+|++|+|+.+++..|.++++|++|+|++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 68999999999999655 368999999999999997 789999999999999999999998899999999999999999
Q ss_pred CCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 101 VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
+.+++ ..|.++++|++|+|++|.++.++.. .+..+++|+.|++++|++.
T Consensus 91 ~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPP-RTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCT-TTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred CEeCH-HHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCCee
Confidence 99987 6899999999999999999999875 5788999999999999864
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=3e-18 Score=163.99 Aligned_cols=132 Identities=27% Similarity=0.305 Sum_probs=121.2
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
+++++|+|++|+|+.+| ..|.++++|++|+|++|.|+.++ .|.++++|++|+|++|+|+.+++..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 57999999999999998 57889999999999999999985 5899999999999999999999999999999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCC--CCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK--PNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i--p~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
++|+|+.+++ ..|+++++|++|++++|.++.+ |. .++.+++|++|++++|.+..+
T Consensus 132 s~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~----~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECCSSCCCEE
T ss_pred CCCcCCCCCh-hhhhcCcccCeeccccCccccCCCch----hhccchhhhhhcccCcccccc
Confidence 9999999987 6799999999999999999865 44 678999999999999987543
No 71
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8e-18 Score=142.36 Aligned_cols=152 Identities=21% Similarity=0.187 Sum_probs=131.6
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
..+.++++++.++.+|..+ .++|++|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 4678999999999999765 389999999999999884 689999999999999999999998888999999999999
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK 177 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (286)
|.|+.+++ ..|..+++|++|++++|.++.+|. .+..+++|++|++++|.+..++
T Consensus 98 N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~--------------------- 151 (229)
T 3e6j_A 98 NQLTVLPS-AVFDRLVHLKELFMCCNKLTELPR----GIERLTHLTHLALDQNQLKSIP--------------------- 151 (229)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCCSCCT----TGGGCTTCSEEECCSSCCCCCC---------------------
T ss_pred CcCCccCh-hHhCcchhhCeEeccCCcccccCc----ccccCCCCCEEECCCCcCCccC---------------------
Confidence 99999987 678999999999999999999998 6899999999999999864221
Q ss_pred cCCCCCCCCCChhhhccCCccCCCCHHHHHH
Q 023142 178 TLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA 208 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ 208 (286)
+..+ ..+.+|+.+++++|.+.+
T Consensus 152 ---~~~~------~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 152 ---HGAF------DRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp ---TTTT------TTCTTCCEEECTTSCBCT
T ss_pred ---HHHH------hCCCCCCEEEeeCCCccC
Confidence 1111 135678999999998763
No 72
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3.3e-18 Score=154.30 Aligned_cols=136 Identities=23% Similarity=0.249 Sum_probs=111.9
Q ss_pred CCccEEEeeCCCCccccc-ccc-CCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 19 IKERELDLRGNKIAVIEN-LGA-TEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~-~~~-~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
..++.|+|++|+|+.++. .+. .+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 458899999999998874 454 7899999999999999875 588999999999999999999888888899999999
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
|++|.|+.+++ ..|.++++|+.|+|++|.++.+|...+..+..+++|++|++++|.+..+
T Consensus 119 L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 119 LYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 99999998876 6888999999999999999988875221226788999999999987644
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=5.3e-20 Score=171.29 Aligned_cols=193 Identities=16% Similarity=0.135 Sum_probs=102.3
Q ss_pred HHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCC
Q 023142 8 LIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFL 87 (286)
Q Consensus 8 ~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 87 (286)
.++..+.+..+++|++|++++|+|+.+| +..+++|++|++++|.++.++ ++.+++|++|++++|++++++ +..+
T Consensus 53 ~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~---~~~l 126 (457)
T 3bz5_A 53 SITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD---VSQN 126 (457)
T ss_dssp CCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC---CTTC
T ss_pred CcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec---CCCC
Confidence 3333344555555555555555555543 444555555555555555543 555555555555555555543 3455
Q ss_pred CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcch
Q 023142 88 PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEE 166 (286)
Q Consensus 88 ~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 166 (286)
++|++|++++|.|++++ ++.+++|++|++++|+ +..++ +..+++|++|++++|.+..++ +....
T Consensus 127 ~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~n~l~~l~-----l~~l~ 191 (457)
T 3bz5_A 127 PLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSFNKITELD-----VSQNK 191 (457)
T ss_dssp TTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCSSCCCCCC-----CTTCT
T ss_pred CcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCCCccceec-----cccCC
Confidence 55555555555555532 3445555555555552 22221 345666666666666654432 11111
Q ss_pred hHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 167 MEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
.+....+....+..+ ..+.+.+|+.+++++|+++.+| ++.+++|+.|++++|.++
T Consensus 192 ------~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 192 ------LLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp ------TCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred ------CCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence 011111111111111 1235677888888888888776 778888888888888884
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.3e-19 Score=166.43 Aligned_cols=216 Identities=17% Similarity=0.110 Sum_probs=144.9
Q ss_pred cCHHHHhCC--CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC------------------CCCC
Q 023142 4 LTADLIWKS--PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN------------------MPHL 63 (286)
Q Consensus 4 Lt~~~i~~~--~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~------------------~~~l 63 (286)
|+.+.+... ..|.++++|++|+|++|.++.+++ +..+++|++|+|++|.|+.++. ...+
T Consensus 41 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l 119 (487)
T 3oja_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRG 119 (487)
T ss_dssp CCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCC
T ss_pred eeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCcccc
Confidence 444445542 357778888888888888876554 5567777777777776654321 1235
Q ss_pred CCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCC-CCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142 64 NRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLT-SLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL 142 (286)
Q Consensus 64 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~-~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L 142 (286)
++|+.|++++|+++++++..+..+++|++|++++|.|+++++ ..+. .+++|+.|+|++|.++.++. +..+++|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~~-----~~~l~~L 193 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYDVKG-----QVVFAKL 193 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCEEEC-----CCCCTTC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-HHHhhhCCcccEEecCCCccccccc-----cccCCCC
Confidence 778888888888888877777788888888888888887654 3554 68888888888888887765 3458888
Q ss_pred cEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChh-hhccCCccCCCCHHHHH--HHHHHHHhcCCH
Q 023142 143 RVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTL 219 (286)
Q Consensus 143 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~n~l~--~ip~~i~~~~~L 219 (286)
++|++++|.+..++.. |.... .+....+....+..+|.. ..+.+|+.+++++|.+. .+|..++.++.|
T Consensus 194 ~~L~Ls~N~l~~~~~~---~~~l~------~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L 264 (487)
T 3oja_A 194 KTLDLSSNKLAFMGPE---FQSAA------GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (487)
T ss_dssp CEEECCSSCCCEECGG---GGGGT------TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred CEEECCCCCCCCCCHh---HcCCC------CccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence 8888888887654321 21111 111111111111112221 35678999999999998 888999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 023142 220 EEVARLEKVLKSGQLP 235 (286)
Q Consensus 220 ~~l~l~~N~l~~g~iP 235 (286)
+.+++.....-.|.-|
T Consensus 265 ~~l~~~~~~~~~~~~~ 280 (487)
T 3oja_A 265 QTVAKQTVKKLTGQNE 280 (487)
T ss_dssp HHHHHHHHHHHTSSSS
T ss_pred cEEeccccccccCCCc
Confidence 9999975544334444
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=4.5e-20 Score=179.22 Aligned_cols=221 Identities=19% Similarity=0.131 Sum_probs=118.8
Q ss_pred cCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142 15 FFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 91 (286)
|.++++|++|++++|.++.+ |..+..+++|++|+|++|.++.+| .|..+++|++|++++|+++.+++..|..+++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 55566666666666666644 344555666666666666666664 366666666666666666666655556666666
Q ss_pred EEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchh----
Q 023142 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEM---- 167 (286)
Q Consensus 92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~---- 167 (286)
+|++++|.++..++ ..+.++++|++|++++|.++.++...+ .+..+++|+.|++++|.+...... .|.....
T Consensus 125 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L 200 (680)
T 1ziw_A 125 TLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQALKSEEL-DIFANSSLKKLELSSNQIKEFSPG--CFHAIGRLFGL 200 (680)
T ss_dssp EEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCCCBCHHHH-GGGTTCEESEEECTTCCCCCBCTT--GGGGSSEECEE
T ss_pred EEECCCCcccccCc-hhhcccccCCEEEccCCcccccCHHHh-hccccccccEEECCCCcccccChh--hhhhhhhhhhh
Confidence 66666666666554 456666666666666666665543210 112345666666666654322110 0110000
Q ss_pred ------------HHHH-----HhhhcccCCCCCCCCC-C-hhhhcc--CCccCCCCHHHHHHHH-HHHHhcCCHHHHHHH
Q 023142 168 ------------EEEA-----KKESMKTLMPVEVPNV-S-EEEEQQ--TPKVVAPTPEQIIAIK-AAIVNSQTLEEVARL 225 (286)
Q Consensus 168 ------------~~~~-----~~~~~~~~~~~~~~~~-~-~~~~~~--~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~ 225 (286)
..+. ..+....+....+... + ....+. +|+.+++++|+++.++ ..++.+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 0000 0000001111111100 0 112233 4888888888888554 667888888888888
Q ss_pred HHHHhcCCCCCCCcc
Q 023142 226 EKVLKSGQLPADLKI 240 (286)
Q Consensus 226 ~N~l~~g~iP~~~~~ 240 (286)
+|.+. +.+|..+..
T Consensus 281 ~n~l~-~~~~~~~~~ 294 (680)
T 1ziw_A 281 YNNIQ-HLFSHSLHG 294 (680)
T ss_dssp SCCBS-EECTTTTTT
T ss_pred CCccC-ccChhhhcC
Confidence 88874 445544443
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=8.5e-21 Score=167.88 Aligned_cols=205 Identities=14% Similarity=0.079 Sum_probs=143.2
Q ss_pred CCCCccEEEeeCCCCc-cccccc--cCCCCcCEEeccCCCCCCCC-CCCCC-----CCCCeEeccCCcCcccCCccccCC
Q 023142 17 NAIKERELDLRGNKIA-VIENLG--ATEDQFDTIDLSDNEIVKLE-NMPHL-----NRLGTLIINNNRITRINPNIGEFL 87 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~-~l~~~~--~~l~~L~~L~Ls~N~l~~i~-~~~~l-----~~L~~L~Ls~N~l~~l~~~~~~~l 87 (286)
++++|++|++++|+++ .+|..+ ..+++|++|++++|.++.+| .+..+ ++|++|++++|+++++++..+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5788889999999888 577654 67888999999999888776 34444 888999999999988887777888
Q ss_pred CCccEEEeecCcCCCC---CCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhc
Q 023142 88 PKLHTLVLTNNRLVNL---VEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFAS 164 (286)
Q Consensus 88 ~~L~~L~Ls~N~i~~~---~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 164 (286)
++|++|++++|++.+. +....+..+++|++|++++|.++.++......+..+++|++|++++|.+..... ...+..
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG-APSCDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-CSCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-hhhhhh
Confidence 8999999999887652 220123778889999999998886554322355678888999998888654320 001111
Q ss_pred chhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 165 EEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
. ..+....+....+..+|.... .+|+.+++++|+|+.+|. +..+++|++|++++|.++
T Consensus 252 l------~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 P------SQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C------TTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred c------CCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 1 111111111111112222211 589999999999998876 899999999999999885
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=1.3e-19 Score=168.61 Aligned_cols=193 Identities=15% Similarity=0.143 Sum_probs=153.6
Q ss_pred CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 91 (286)
+..+.++++|++|++++|.++.+| .+..+++|++|++++|.++.++ ++.+++|++|++++|++++++ +..+++|+
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~ 109 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLT 109 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCC
Confidence 445677899999999999999987 5677999999999999999987 899999999999999999984 57899999
Q ss_pred EEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-hHHHHHHHHHhhcchhHHH
Q 023142 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK-NKERMEAASLFASEEMEEE 170 (286)
Q Consensus 92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~ 170 (286)
+|++++|.+++++ ++.+++|++|++++|+++.++ ++.+++|++|++++|. +..+. +...
T Consensus 110 ~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~~~~-----~~~l----- 169 (457)
T 3bz5_A 110 YLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKLD-----VTPQ----- 169 (457)
T ss_dssp EEECCSSCCSCCC----CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCCCCC-----CTTC-----
T ss_pred EEECCCCcCCeec----CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCcccccc-----cccC-----
Confidence 9999999999863 788999999999999999874 5789999999999994 22110 1111
Q ss_pred HHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 023142 171 AKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLP 235 (286)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP 235 (286)
..+....+....+..++ ...+.+|+.++++.|+++.+ .++.+++|++|++++|.+. .||
T Consensus 170 -~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~--~ip 228 (457)
T 3bz5_A 170 -TQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLT--EID 228 (457)
T ss_dssp -TTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCS--CCC
T ss_pred -CcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCccc--ccC
Confidence 11111112222222222 34677899999999999877 3889999999999999995 377
No 78
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=143.54 Aligned_cols=151 Identities=23% Similarity=0.239 Sum_probs=129.5
Q ss_pred ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC---CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE---NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
-+.+++++|.++.+|..+ ...+++|+|++|.|+.++ .|..+++|+.|+|++|+|+.+++..|..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 368999999999999765 356799999999999873 378999999999999999999998889999999999999
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcc
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMK 177 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (286)
|.|+.+++ ..|.++++|++|+|++|.++.++.. .+..+++|++|++++|.+..+
T Consensus 91 N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~---------------------- 144 (220)
T 2v70_A 91 NRLENVQH-KMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTV---------------------- 144 (220)
T ss_dssp SCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCB----------------------
T ss_pred CccCccCH-hHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcCCEE----------------------
Confidence 99999987 6799999999999999999988543 688999999999999985422
Q ss_pred cCCCCCCCCCChhhhccCCccCCCCHHHHH
Q 023142 178 TLMPVEVPNVSEEEEQQTPKVVAPTPEQII 207 (286)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~ 207 (286)
.+..+ ..+.+|+.+++++|.+.
T Consensus 145 --~~~~~------~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 145 --APGAF------DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp --CTTTT------TTCTTCCEEECCSCCEE
T ss_pred --CHHHh------cCCCCCCEEEecCcCCc
Confidence 12222 13668999999999887
No 79
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=7.3e-18 Score=138.78 Aligned_cols=127 Identities=24% Similarity=0.278 Sum_probs=114.3
Q ss_pred ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-C--CCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-N--MPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~--~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
-+.+++++|+++.+|..+. .++++|++++|.|+.++ . |..+++|++|+|++|+|+++++..|..+++|++|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3789999999999997654 48999999999999885 2 88999999999999999999888888999999999999
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
|+|+.+++ ..|.++++|++|+|++|+++.++.. .+..+++|++|++++|.+.
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECS-SSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCCcc
Confidence 99999987 6799999999999999999976443 6889999999999999864
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.2e-19 Score=172.66 Aligned_cols=87 Identities=18% Similarity=0.148 Sum_probs=56.1
Q ss_pred CcCCCCCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC-CccccCCCCcc
Q 023142 14 HFFNAIKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN-PNIGEFLPKLH 91 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~ 91 (286)
.|.++++|++|++++|+|+.+ |..+..+++|++|++++|.|+.+|.. .+++|++|++++|+++.++ +..|..+++|+
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~ 149 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT 149 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCccc
Confidence 566677777777777777765 35566667777777777777666644 6666777777777766654 24455666666
Q ss_pred EEEeecCcCC
Q 023142 92 TLVLTNNRLV 101 (286)
Q Consensus 92 ~L~Ls~N~i~ 101 (286)
+|++++|.|+
T Consensus 150 ~L~L~~n~l~ 159 (562)
T 3a79_B 150 FLGLSAAKFR 159 (562)
T ss_dssp EEEEECSBCC
T ss_pred EEecCCCccc
Confidence 6666666543
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=3.6e-18 Score=147.56 Aligned_cols=135 Identities=22% Similarity=0.246 Sum_probs=84.2
Q ss_pred HhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142 9 IWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (286)
Q Consensus 9 i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 88 (286)
+++.+.+..+++|+.|++++|.|+.++ .+..+++|++|++++|.|+.++.+..+++|++|++++|++++++... . +
T Consensus 31 i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~--~-~ 106 (263)
T 1xeu_A 31 VTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIP--S-A 106 (263)
T ss_dssp TTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCC--C-S
T ss_pred cccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcCccc--c-C
Confidence 334344555666667777776666666 34456666777777776666655666666677777776666665422 2 6
Q ss_pred CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
+|++|++++|.|+.++ .+..+++|+.|++++|+++.++ .+..+++|++|++++|.+...
T Consensus 107 ~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 107 CLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp SCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCBC
T ss_pred cccEEEccCCccCCCh---hhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcch
Confidence 6666666666666653 3666666666666666666654 256666666666666665543
No 82
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=2.8e-17 Score=133.20 Aligned_cols=130 Identities=20% Similarity=0.270 Sum_probs=116.6
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
..+.+++++++++.+|..+ .++|++|++++|.++.++ .|..+++|++|++++|+++.+++..|..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3578999999999999554 478999999999999886 478999999999999999999988888999999999999
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
|.|+.+++ ..+..+++|++|++++|.++.++.. .+..+++|++|++++|++...
T Consensus 86 N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPN-GVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCH-HHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCCeecc
Confidence 99999987 6789999999999999999999874 568899999999999997543
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=9.7e-18 Score=146.96 Aligned_cols=141 Identities=28% Similarity=0.316 Sum_probs=125.5
Q ss_pred ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (286)
Q Consensus 3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~ 82 (286)
.++.+.+...+.+..+++|+.|++++|+++.++. +..+++|++|++++|.++.++.+..+++|++|++++|+++.++
T Consensus 52 ~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-- 128 (291)
T 1h6t_A 52 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-- 128 (291)
T ss_dssp ECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--
T ss_pred EccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh--
Confidence 3455566677778999999999999999999887 7789999999999999999988999999999999999999984
Q ss_pred cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
.+..+++|+.|++++|.|+.++ .+..+++|+.|++++|.++.++. +..+++|++|++++|.+..
T Consensus 129 ~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCB
T ss_pred hhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccccchh-----hcCCCccCEEECCCCcCCC
Confidence 3568999999999999999983 58899999999999999998875 7899999999999998653
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=4.3e-19 Score=165.05 Aligned_cols=213 Identities=18% Similarity=0.173 Sum_probs=106.1
Q ss_pred cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCcc
Q 023142 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNI 83 (286)
Q Consensus 4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~ 83 (286)
++.+.++..+.+.++++|+.|++++|+++.+|... ++|++|++++|.++.+|.++.+++|++|++++|+++++|.
T Consensus 180 L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-- 254 (454)
T 1jl5_A 180 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-- 254 (454)
T ss_dssp CCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--
T ss_pred CcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--
Confidence 33444455556677777777777777777666432 4677777777777777777777777888887777777653
Q ss_pred ccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchH------------HHHhhC-CCCcEEeCCCC
Q 023142 84 GEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRL------------YVIHKL-KSLRVLDFKKV 150 (286)
Q Consensus 84 ~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~------------~~l~~l-~~L~~L~l~~n 150 (286)
.+++|+.|++++|.+++++. . +++|+.|++++|.++.++.... ..+..+ ++|++|++++|
T Consensus 255 --~~~~L~~L~l~~N~l~~l~~--~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N 327 (454)
T 1jl5_A 255 --LPPSLEALNVRDNYLTDLPE--L---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 327 (454)
T ss_dssp --CCTTCCEEECCSSCCSCCCC--C---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS
T ss_pred --cccccCEEECCCCcccccCc--c---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC
Confidence 23567777777777766654 1 2556666666666655432100 000011 35555555555
Q ss_pred ChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHH---HHHHHHhc-----------
Q 023142 151 KNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIA---IKAAIVNS----------- 216 (286)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~---ip~~i~~~----------- 216 (286)
.+..++.. + ..+....+....+..+|. .+.+|+.+++++|+++. +|..+.++
T Consensus 328 ~l~~lp~~---~---------~~L~~L~L~~N~l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~ 393 (454)
T 1jl5_A 328 KLIELPAL---P---------PRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393 (454)
T ss_dssp CCSCCCCC---C---------TTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------
T ss_pred cccccccc---C---------CcCCEEECCCCccccccc--hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc
Confidence 54432110 0 111111111111222222 35678888999988886 55666666
Q ss_pred --CCHHHHHHHHHHHhc-CCCCCCCccCC
Q 023142 217 --QTLEEVARLEKVLKS-GQLPADLKIPD 242 (286)
Q Consensus 217 --~~L~~l~l~~N~l~~-g~iP~~~~~~~ 242 (286)
++|+.|++++|.+++ +.||.++....
T Consensus 394 ~~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 394 LPQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp -----------------------------
T ss_pred ccCcCCEEECCCCcCCccccchhhHhhee
Confidence 889999999999962 37888775543
No 85
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4e-18 Score=163.70 Aligned_cols=174 Identities=18% Similarity=0.233 Sum_probs=110.5
Q ss_pred CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
..+..+++|+.|++++|.|..++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.++ .+..+++|+.
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 113 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS 113 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred cchhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence 334455667777777777766653 4456777777777777776655666777777777777776664 2456677777
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHH
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK 172 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 172 (286)
|+|++|.|+.++ .+..+++|+.|+|++|.++.++ .+..+++|+.|++++|.+..+. +
T Consensus 114 L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~~~----------~----- 170 (605)
T 1m9s_A 114 LSLEHNGISDIN---GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIV----------P----- 170 (605)
T ss_dssp EECTTSCCCCCG---GGGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCCCCCG----------G-----
T ss_pred EEecCCCCCCCc---cccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcCCCch----------h-----
Confidence 777777776653 3666677777777777776663 3666777777777777643211 0
Q ss_pred hhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 173 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
...+.+|+.|+|++|+|+.+| .+..+++|+.|++++|.+.
T Consensus 171 -----------------l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 -----------------LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -----------------GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred -----------------hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 012445666666666666653 4666777777777777663
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=7.2e-18 Score=152.11 Aligned_cols=146 Identities=23% Similarity=0.288 Sum_probs=125.7
Q ss_pred cCHHHHhC--CCCcC-CCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCc
Q 023142 4 LTADLIWK--SPHFF-NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT 77 (286)
Q Consensus 4 Lt~~~i~~--~~~~~-~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~ 77 (286)
|+.+.|+. +..|. ++++|+.|+|++|+|+.++ ..+..+++|++|+|++|.|+.++ .|..+++|+.|+|++|+|+
T Consensus 46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~ 125 (361)
T 2xot_A 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV 125 (361)
T ss_dssp CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc
Confidence 44444544 23355 8999999999999999887 56888999999999999999886 5899999999999999999
Q ss_pred ccCCccccCCCCccEEEeecCcCCCCCCCccC---CCCCCccEEEecCCcCCCCCCchHHHHhhCCC--CcEEeCCCCCh
Q 023142 78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPL---TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS--LRVLDFKKVKN 152 (286)
Q Consensus 78 ~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l---~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~--L~~L~l~~n~~ 152 (286)
.+++..|..+++|+.|+|++|.|+.++. ..| ..+++|+.|+|++|+|+.+|.. .+..++. ++.|++++|++
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 126 VVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHHTTEECCSSCE
T ss_pred EECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhcceEEecCCCc
Confidence 9998888999999999999999999987 555 6799999999999999999864 6788887 48899999997
Q ss_pred H
Q 023142 153 K 153 (286)
Q Consensus 153 ~ 153 (286)
.
T Consensus 202 ~ 202 (361)
T 2xot_A 202 E 202 (361)
T ss_dssp E
T ss_pred c
Confidence 5
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=8.4e-18 Score=142.75 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=109.9
Q ss_pred CcCCCCCccEEEeeCCC-Cccccc-cccCCCCcCEEeccC-CCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142 14 HFFNAIKERELDLRGNK-IAVIEN-LGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~-l~~l~~-~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 88 (286)
.|.++++|+.|++++|. ++.++. .+..+++|++|++++ |.++.++ .|..+++|++|++++|+++++|. +..++
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--ccccc
Confidence 57788999999999996 888874 677888999999998 8888875 57788899999999999888865 56777
Q ss_pred Ccc---EEEeecC-cCCCCCCCccCCCCCCcc-EEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC-hHHH
Q 023142 89 KLH---TLVLTNN-RLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK-NKER 155 (286)
Q Consensus 89 ~L~---~L~Ls~N-~i~~~~~~~~l~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~-~~~~ 155 (286)
+|+ +|++++| .++.+++ ..|.++++|+ .|++++|.++.+|.. .+.. ++|+.|++++|+ +..+
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~~i~~~---~~~~-~~L~~L~L~~n~~l~~i 195 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFTSVQGY---AFNG-TKLDAVYLNKNKYLTVI 195 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCCEECTT---TTTT-CEEEEEECTTCTTCCEE
T ss_pred ccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCcccCHh---hcCC-CCCCEEEcCCCCCcccC
Confidence 777 8999998 8888876 6788888898 999999988888774 3333 788888888884 6543
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5.1e-18 Score=146.62 Aligned_cols=136 Identities=24% Similarity=0.319 Sum_probs=82.0
Q ss_pred CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142 5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG 84 (286)
Q Consensus 5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 84 (286)
+.+.|+..+.+..+++|+.|++++|+|+.++. +..+++|++|++++|+++.++.+.. ++|+.|++++|++++++. +
T Consensus 49 ~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~--l 124 (263)
T 1xeu_A 49 DNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS--L 124 (263)
T ss_dssp TTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG--G
T ss_pred cCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh--h
Confidence 34444454555666666666666666666655 5556666666666666666654444 666666666666666532 3
Q ss_pred cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 85 EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
..+++|+.|++++|+|++++ .+..+++|+.|++++|+++.++ .+..+++|+.|++++|++
T Consensus 125 ~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~~-----~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNTG-----GLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBCT-----TSTTCCCCCEEEEEEEEE
T ss_pred cCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcchH-----HhccCCCCCEEeCCCCcc
Confidence 45666666666666666653 3555666666666666666552 355666666666666654
No 89
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=3.2e-18 Score=170.41 Aligned_cols=215 Identities=19% Similarity=0.155 Sum_probs=116.6
Q ss_pred CcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142 14 HFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 90 (286)
.|..+++|+.|++++|+++.++ ..+..+++|++|+|++|.++.+ + .|..+++|+.|++++|+++.+++..|..+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 3455556666666666665443 4455556666666666666554 2 45566666666666666666655555556666
Q ss_pred cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCc------------------hHHHHhhCCCCcEEeCCCCCh
Q 023142 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNY------------------RLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~------------------~~~~l~~l~~L~~L~l~~n~~ 152 (286)
++|++++|.++.++. +++|+.|++++|+++.+|.. ....+..+++|+.|++++|.+
T Consensus 365 ~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 365 QTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp CEEEEETCCSCCCSS------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred CEEECCCCCCCcccC------CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 666666665554432 22233333333333322211 112456899999999999986
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhcccCC--CCCCCCCChhhhccCCccCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHH
Q 023142 153 KERMEAASLFASEEMEEEAKKESMKTLM--PVEVPNVSEEEEQQTPKVVAPTPEQIIAIK-AAIVNSQTLEEVARLEKVL 229 (286)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip-~~i~~~~~L~~l~l~~N~l 229 (286)
....... .+........+ .+..+.+. +...........+.+|+.+++++|+++.+| ..+..+++|++|++++|.+
T Consensus 439 ~~~~~~~-~~~~~~~L~~L-~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 439 SSCSGDQ-TPSENPSLEQL-FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp CCCCSSS-SSCSCTTCCBC-EEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCC
T ss_pred ccccccc-ccccCCccccc-cCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCC
Confidence 5321100 01111000000 00111110 000000001135789999999999999777 4578999999999999999
Q ss_pred hcCCCCCCC
Q 023142 230 KSGQLPADL 238 (286)
Q Consensus 230 ~~g~iP~~~ 238 (286)
+ .+|+..
T Consensus 517 ~--~l~~~~ 523 (844)
T 3j0a_A 517 T--VLSHND 523 (844)
T ss_dssp S--SCCCCC
T ss_pred C--ccChhh
Confidence 4 355443
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=2.7e-19 Score=170.47 Aligned_cols=168 Identities=18% Similarity=0.238 Sum_probs=103.3
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 98 (286)
++|+.|++++|+|+.+| ..+++|++|++++|.|+.+|.+.. +|++|+|++|+|+++|. .+++|+.|++++|
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCC
Confidence 56777777777777777 236677777777777777766443 77777777777777665 4577777777777
Q ss_pred cCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHH---Hhhh
Q 023142 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEA---KKES 175 (286)
Q Consensus 99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~---~~~~ 175 (286)
.|+.+|. .+++|+.|+|++|+++.+|. +. ++|++|++++|.++.++. |.. .+. ..+.
T Consensus 151 ~l~~lp~-----~l~~L~~L~Ls~N~L~~lp~-----l~--~~L~~L~Ls~N~L~~lp~----~~~----~L~~~~~~L~ 210 (571)
T 3cvr_A 151 QLTMLPE-----LPTSLEVLSVRNNQLTFLPE-----LP--ESLEALDVSTNLLESLPA----VPV----RNHHSEETEI 210 (571)
T ss_dssp CCSCCCC-----CCTTCCEEECCSSCCSCCCC-----CC--TTCCEEECCSSCCSSCCC----CC------------CCE
T ss_pred ccCcCCC-----cCCCcCEEECCCCCCCCcch-----hh--CCCCEEECcCCCCCchhh----HHH----hhhcccccce
Confidence 7777654 45677888888888777766 12 778888888887664432 111 000 0001
Q ss_pred cccCCCCCCCCCCh-hhhccCCccCCCCHHHHH-HHHHHHHh
Q 023142 176 MKTLMPVEVPNVSE-EEEQQTPKVVAPTPEQII-AIKAAIVN 215 (286)
Q Consensus 176 ~~~~~~~~~~~~~~-~~~~~~l~~l~ls~n~l~-~ip~~i~~ 215 (286)
...+....+..+|. ...+.+|+.+++++|.++ .+|..+..
T Consensus 211 ~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 211 FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp EEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred EEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 11222222223333 245666777777777765 55555544
No 91
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=2.8e-19 Score=169.21 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=149.3
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|++|++++|.++.++ ..+..+++|++|++++|.++.++ .|..+++|++|++++|+++++++..+..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 78999999999999774 67888999999999999999875 6899999999999999999998887889999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCc-CCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhh
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNS-ITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKE 174 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~-l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~ 174 (286)
++|.++.++....++++++|++|++++|. +..++.. .+..+++|++|++++|.+...
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~------------------- 163 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI---DFAGLTSLNELEIKALSLRNY------------------- 163 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---TTTTCCEEEEEEEEETTCCEE-------------------
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHh---hhhcccccCeeeccCCccccc-------------------
Confidence 99999975422478999999999999998 6677643 688999999999999974321
Q ss_pred hcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHh
Q 023142 175 SMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAI-VNSQTLEEVARLEKVLK 230 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i-~~~~~L~~l~l~~N~l~ 230 (286)
.+..+ +.+.+|+.++++.|.+..+|..+ ..+++|+.|++++|.+.
T Consensus 164 -----~~~~l------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 164 -----QSQSL------KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp -----CTTTT------TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred -----Chhhh------hccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 11111 23667888888888888888665 56899999999999995
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=3.5e-20 Score=168.41 Aligned_cols=219 Identities=13% Similarity=0.073 Sum_probs=149.8
Q ss_pred cCHHHHhC-CCCcCCCCCccEEEeeCCCCcc-----ccccccCCCCcCEEeccCCCCCCC----C-C-------CCCCCC
Q 023142 4 LTADLIWK-SPHFFNAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKL----E-N-------MPHLNR 65 (286)
Q Consensus 4 Lt~~~i~~-~~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i----~-~-------~~~l~~ 65 (286)
++...+.. +..+..+++|+.|+|++|.|+. ++..+..+++|++|+|++|.+..+ | . +..+++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 34445554 3456678899999999999984 444567899999999999877644 2 2 368999
Q ss_pred CCeEeccCCcCccc----CCccccCCCCccEEEeecCcCCCCCCCcc----CCCC---------CCccEEEecCCcCCC-
Q 023142 66 LGTLIINNNRITRI----NPNIGEFLPKLHTLVLTNNRLVNLVEIDP----LTSL---------PKLQFLSLLDNSITK- 127 (286)
Q Consensus 66 L~~L~Ls~N~l~~l----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~----l~~l---------~~L~~L~L~~N~l~~- 127 (286)
|++|+|++|+++.. .+..+..+++|++|+|++|.|+.... .. +..+ ++|++|++++|+++.
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG-AKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH-HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH-HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 99999999999972 23345689999999999999874332 12 3333 899999999999973
Q ss_pred -CCCchHHHHhhCCCCcEEeCCCCChHHHHH--HHH-HhhcchhHHHHHhhhcccCCCCCC-----CCCChh-hhccCCc
Q 023142 128 -KPNYRLYVIHKLKSLRVLDFKKVKNKERME--AAS-LFASEEMEEEAKKESMKTLMPVEV-----PNVSEE-EEQQTPK 197 (286)
Q Consensus 128 -ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~l~ 197 (286)
++. ....+..+++|++|++++|.+..... ... .+..... +....+....+ ..++.. ..+++|+
T Consensus 175 ~~~~-l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~------L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 175 SMKE-WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE------LKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp GHHH-HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT------CCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred HHHH-HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC------ccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 331 11267899999999999999874321 111 2222211 11111111111 001111 3567899
Q ss_pred cCCCCHHHHHH-----HHHHHHh--cCCHHHHHHHHHHHh
Q 023142 198 VVAPTPEQIIA-----IKAAIVN--SQTLEEVARLEKVLK 230 (286)
Q Consensus 198 ~l~ls~n~l~~-----ip~~i~~--~~~L~~l~l~~N~l~ 230 (286)
.+++++|.++. ++..+.. +++|+.|++++|.+.
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 99999998863 5777754 899999999998884
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.1e-16 Score=133.01 Aligned_cols=131 Identities=22% Similarity=0.307 Sum_probs=119.7
Q ss_pred CCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 18 AIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
.++|++|++++|+++.++. .+..+++|++|++++|.++.++ .|..+++|++|++++|+++.+++..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 5689999999999998874 5678999999999999999886 478999999999999999999988888999999999
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCCh
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKN 152 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~ 152 (286)
+++|.|+.+++ ..|..+++|++|++++|.++.++.. .+..+++|++|++++|.+
T Consensus 107 L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 107 LNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCCB
T ss_pred cCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCCe
Confidence 99999999987 6789999999999999999988874 578899999999999963
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=8.3e-19 Score=168.82 Aligned_cols=37 Identities=8% Similarity=0.041 Sum_probs=22.8
Q ss_pred ccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023142 193 QQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVL 229 (286)
Q Consensus 193 ~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l 229 (286)
+.+|+.+++++|+|+.||..+.++++|+.|++++|.+
T Consensus 260 ~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 260 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred cccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence 3456666666666666666666666666666666665
No 95
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=9.4e-17 Score=132.35 Aligned_cols=123 Identities=25% Similarity=0.296 Sum_probs=108.4
Q ss_pred cCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC
Q 023142 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP 81 (286)
Q Consensus 4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~ 81 (286)
++.+.++..+.- -.++|+.|++++|+|+.+|..+..+++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++
T Consensus 17 ~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 17 CSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp CTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence 344445554431 236899999999999999988999999999999999999886 59999999999999999999999
Q ss_pred ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCC
Q 023142 82 NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128 (286)
Q Consensus 82 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i 128 (286)
..|..+++|++|+|++|.|+.+++ ..|..+++|+.|++++|++...
T Consensus 96 ~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 96 RTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECS
T ss_pred HHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecC
Confidence 888999999999999999999987 6799999999999999999753
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=9e-19 Score=157.33 Aligned_cols=202 Identities=19% Similarity=0.239 Sum_probs=143.9
Q ss_pred CCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCe-EeccCCcCcccCCccccCCCCccE
Q 023142 18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGT-LIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~-L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
++++++|+|++|+|+.+| ..|.++++|++|+|++|.+.. +| .|.+++++.. +.+++|+++.+++..|..+++|++
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 467999999999999998 468889999999999999864 55 5788888875 667789999999998999999999
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecC-CcCCCCCCchHHHHhhCC-CCcEEeCCCCChHHHHHHHHHhhcchhHHH
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLD-NSITKKPNYRLYVIHKLK-SLRVLDFKKVKNKERMEAASLFASEEMEEE 170 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~-N~l~~ip~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 170 (286)
|++++|+|+.+++ ..+....++..|++.+ +.+..++.. .+..+. .++.|++++|.+++++.. .|....
T Consensus 109 L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~~--~f~~~~---- 178 (350)
T 4ay9_X 109 LLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHNS--AFNGTQ---- 178 (350)
T ss_dssp EEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECTT--SSTTEE----
T ss_pred ccccccccccCCc-hhhcccchhhhhhhcccccccccccc---chhhcchhhhhhccccccccCCChh--hccccc----
Confidence 9999999999887 4666677788888865 678877764 445554 588999999987654321 122211
Q ss_pred HHhhhcccCC-CCCCCCCChh--hhccCCccCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCC
Q 023142 171 AKKESMKTLM-PVEVPNVSEE--EEQQTPKVVAPTPEQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPA 236 (286)
Q Consensus 171 ~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~l~ls~n~l~~ip~-~i~~~~~L~~l~l~~N~l~~g~iP~ 236 (286)
+....+. ...+..++.. ..+.+|+.+++++|+|+.||. .+.++++|+.++. +.+ ..+|+
T Consensus 179 ---L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l--~~lP~ 241 (350)
T 4ay9_X 179 ---LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL--KKLPT 241 (350)
T ss_dssp ---EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTC--CCCCC
T ss_pred ---hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCc--CcCCC
Confidence 0000000 0111122221 367889999999999998884 4566666666543 334 45763
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=7.9e-17 Score=154.11 Aligned_cols=149 Identities=22% Similarity=0.238 Sum_probs=122.5
Q ss_pred ccCHHHHhC--CCCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCc
Q 023142 3 RLTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT 77 (286)
Q Consensus 3 ~Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~ 77 (286)
.|+.+.|+. +..|.++++|++|+|++|+|+.++ ..|.++++|++|+|++|+|+.+| .|.++++|++|+|++|+++
T Consensus 58 dLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 58 DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred EeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 456666665 346999999999999999999987 57888999999999999999986 5899999999999999999
Q ss_pred ccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCC-CcEEeCCCCC
Q 023142 78 RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKS-LRVLDFKKVK 151 (286)
Q Consensus 78 ~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~-L~~L~l~~n~ 151 (286)
.+++..|+++++|++|++++|.|+.++....++.+++|++|++++|+++.++...+..+..++. +..++++.|.
T Consensus 138 ~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 138 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 9999888999999999999999987653246888999999999999999876553334444332 2345555554
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=3.7e-17 Score=160.23 Aligned_cols=182 Identities=16% Similarity=0.192 Sum_probs=110.3
Q ss_pred CCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCcc
Q 023142 30 KIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDP 108 (286)
Q Consensus 30 ~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~ 108 (286)
.+...+..+..+..|+.|+|++|.+..+| .+..+++|++|+|++|.|+.+|..+ ..+++|++|+|++|.|+.+|. .
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~--~ 288 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPA--E 288 (727)
T ss_dssp ----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCS--S
T ss_pred ceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccCh--h
Confidence 33334566778999999999999999997 6779999999999999999887554 799999999999999999876 7
Q ss_pred CCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCC
Q 023142 109 LTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVS 188 (286)
Q Consensus 109 l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (286)
|+++++|++|+|++|.|+.+|. .|+.+++|++|++++|.+....... |.........-.+..+.+....+.
T Consensus 289 ~~~l~~L~~L~L~~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~~~p~~--~~~~~~~~~~l~l~~N~l~~~~p~--- 359 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVTTLPW----EFGNLCNLQFLGVEGNPLEKQFLKI--LTEKSVTGLIFYLRDNRPEIPLPH--- 359 (727)
T ss_dssp GGGGTTCSEEECCSSCCCCCCS----STTSCTTCCCEECTTSCCCSHHHHH--HHHHHHHHHHHHHHHCCCCCCCCC---
T ss_pred hcCCCCCCEEECCCCCCCccCh----hhhcCCCccEEeCCCCccCCCChHH--HhhcchhhhHHhhccCcccCcCcc---
Confidence 9999999999999999999998 6899999999999999987543222 222111111122333444333322
Q ss_pred hhhhccCCccCCCCHH--------HHH-HHHHHHHhcCCHHHHHHHHHHH
Q 023142 189 EEEEQQTPKVVAPTPE--------QII-AIKAAIVNSQTLEEVARLEKVL 229 (286)
Q Consensus 189 ~~~~~~~l~~l~ls~n--------~l~-~ip~~i~~~~~L~~l~l~~N~l 229 (286)
.+..++++.| .+. .++..+.++..+....+++|.+
T Consensus 360 ------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 360 ------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ------C-----------------------------------------CC
T ss_pred ------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 4666777766 233 2223445666666677777776
No 99
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=1.3e-16 Score=147.45 Aligned_cols=132 Identities=24% Similarity=0.300 Sum_probs=120.7
Q ss_pred CCccEEEeeCCCCccc-cccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVI-ENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|+.|++++|.++.+ |..+..+++|++|++++|.++.++ .|..+++|++|++++|+++++++..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 6899999999999965 577888999999999999999874 7899999999999999999998888889999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
++|.|+.+++ ..|.++++|++|++++|+++.+|.. .+..+++|++|++++|++..
T Consensus 355 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 355 SYNHIRALGD-QSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSCBCC
T ss_pred CCCcccccCh-hhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCCccc
Confidence 9999999876 6899999999999999999998875 57899999999999999753
No 100
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=8.7e-19 Score=164.97 Aligned_cols=184 Identities=20% Similarity=0.186 Sum_probs=111.3
Q ss_pred CCCCCccEEEeeCCCCcccc-ccccCC---CCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142 16 FNAIKERELDLRGNKIAVIE-NLGATE---DQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~l~-~~~~~l---~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 91 (286)
.++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+..++.+..+++|++|++++|++++..+..+..+++|+
T Consensus 273 ~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred ccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 4444455555555544 333 122111 34666666666655544346677777777777777775445556777777
Q ss_pred EEEeecCcCCCCCCC-ccCCCCCCccEEEecCCcCCC-CCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHH
Q 023142 92 TLVLTNNRLVNLVEI-DPLTSLPKLQFLSLLDNSITK-KPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEE 169 (286)
Q Consensus 92 ~L~Ls~N~i~~~~~~-~~l~~l~~L~~L~L~~N~l~~-ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 169 (286)
+|++++|+|++++.+ ..+..+++|++|++++|.++. +|.. .+..+++|++|++++|.+.... +.
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~L~~L~Ls~N~l~~~~-----~~------ 417 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKSLLSLNMSSNILTDTI-----FR------ 417 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTTCCEEECCSSCCCGGG-----GG------
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCccCCEEECcCCCCCcch-----hh------
Confidence 777777777754321 146677777777777777775 6643 3556677777777777653110 00
Q ss_pred HHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 023142 170 EAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLKSGQLPAD 237 (286)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~~g~iP~~ 237 (286)
.+ ..+|+.+++++|+|+.+|..+..+++|++|++++|.++ .+|..
T Consensus 418 --------~l-------------~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~ 462 (520)
T 2z7x_B 418 --------CL-------------PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK--SVPDG 462 (520)
T ss_dssp --------SC-------------CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC--CCCTT
T ss_pred --------hh-------------cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC--ccCHH
Confidence 00 02577777777777777777777777777777777773 56665
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=165.43 Aligned_cols=217 Identities=16% Similarity=0.080 Sum_probs=152.8
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|+.|++++|.++.++ ..+..+++|+.|+|++|.++.++ .|..+++|++|+|++|+++.+.+..|..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 68999999999999764 77888999999999999999773 6899999999999999999998888899999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChH--------------------HH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK--------------------ER 155 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~--------------------~~ 155 (286)
++|.|+.+++ ..|.++++|+.|++++|.++.++. +++|+.|++++|++. .+
T Consensus 346 ~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l 416 (844)
T 3j0a_A 346 QKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416 (844)
T ss_dssp CSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCSS--------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSS
T ss_pred CCCCCCccCh-hhhcCCCCCCEEECCCCCCCcccC--------CCCcchhccCCCCcccccccccccceeecccCccccC
Confidence 9999999987 689999999999999999987653 455555555555443 22
Q ss_pred HHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHH
Q 023142 156 MEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIK------AAIVNSQTLEEVARLEKVL 229 (286)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip------~~i~~~~~L~~l~l~~N~l 229 (286)
.... .+........+ .+..+.+...... .....+.+|+.+++++|.++.++ ..+..+++|++|++++|.+
T Consensus 417 ~~~~-~~~~l~~L~~L-~Ls~N~l~~~~~~--~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 417 DILY-FLLRVPHLQIL-ILNQNRFSSCSGD--QTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp TTHH-HHTTCTTCCEE-EEESCCCCCCCSS--SSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred chhh-hhhcCCcccee-eCCCCcccccccc--cccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 1110 11111100000 0011111100000 00123568899999999886332 4578889999999999999
Q ss_pred hcCCCCCCCccCCCCCCCcc
Q 023142 230 KSGQLPADLKIPDYDSGSKD 249 (286)
Q Consensus 230 ~~g~iP~~~~~~~~~~~~~~ 249 (286)
+ +..|..+........++.
T Consensus 493 ~-~~~~~~~~~l~~L~~L~L 511 (844)
T 3j0a_A 493 N-SLPPGVFSHLTALRGLSL 511 (844)
T ss_dssp T-TCCTTSSSSCCSCSEEEE
T ss_pred c-ccChhHccchhhhheeEC
Confidence 5 444444554444444443
No 102
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=1.9e-16 Score=151.57 Aligned_cols=130 Identities=24% Similarity=0.296 Sum_probs=90.6
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++|++|++++|.++.++ ..+..+++|++|++++|.++.+ | .|.++++|++|+|++|+++.+++..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56777777777777665 3566677777777777777766 3 4677777777777777777776666667777777777
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
++|.++.+++ ..++++++|++|++++|.++. +|. .++.+++|++|++++|.+.
T Consensus 112 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 112 VETKLASLES-FPIGQLITLKKLNVAHNFIHSCKLPA----YFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TTSCCCCSSS-SCCTTCTTCCEEECCSSCCCCCCCCG----GGGTCTTCCEEECCSSCCC
T ss_pred cCCccccccc-cccCCCCCCCEEeCCCCcccceechH----hHhhcCCCCEEEccCCcce
Confidence 7777777665 457777777777777777763 455 5677777777777777654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=7.3e-17 Score=154.90 Aligned_cols=142 Identities=27% Similarity=0.313 Sum_probs=118.5
Q ss_pred ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCc
Q 023142 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPN 82 (286)
Q Consensus 3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~ 82 (286)
.+..+.|...+.+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|+|+.++.
T Consensus 49 ~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~- 126 (605)
T 1m9s_A 49 IANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING- 126 (605)
T ss_dssp BCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCGG-
T ss_pred ECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCcc-
Confidence 4555667777788899999999999999998887 67799999999999999988888999999999999999988743
Q ss_pred cccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 83 IGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 83 ~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+..++. +..+++|+.|++++|.+..+
T Consensus 127 -l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 127 -LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp -GGGCTTCSEEECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCCEEECCSSCCCBC
T ss_pred -ccCCCccCEEECCCCccCCch---hhcccCCCCEEECcCCcCCCchh-----hccCCCCCEEECcCCCCCCC
Confidence 468889999999999888873 57788888888888888887754 67888888888888887654
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=3e-16 Score=152.26 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=109.2
Q ss_pred CCCcCCCCCccEEEeeCCCCc---cccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCC-----
Q 023142 12 SPHFFNAIKERELDLRGNKIA---VIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINP----- 81 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~---~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~----- 81 (286)
+..|..+++|+.|++++|.++ .+|..+..+++|++|++++|.++.++ .|..+++|++|++++|+++.++.
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 526 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG 526 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccC
Confidence 445777888888888888775 45667777888888888888888775 47888888888888888887633
Q ss_pred ---ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHH
Q 023142 82 ---NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERM 156 (286)
Q Consensus 82 ---~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~ 156 (286)
..+.++++|++|++++|.|+.++. ..|.++++|+.|++++|+++.+|.. .+..+++|+.|++++|.++.++
T Consensus 527 ~~~~~~~~l~~L~~L~L~~N~l~~i~~-~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 527 GPIYFLKGLSHLHILNLESNGFDEIPV-EVFKDLFELKIIDLGLNNLNTLPAS---VFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp SCCCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSCCCBCC
T ss_pred CcchhhcCCCCCCEEECCCCCCCCCCH-HHcccccCcceeECCCCCCCcCCHh---HhCCCCCCCEEECCCCcCCccC
Confidence 235677888888888888888876 5688888888888888888888765 5677888888888888776543
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=145.43 Aligned_cols=177 Identities=10% Similarity=0.056 Sum_probs=128.4
Q ss_pred CCCCCccEEEeeCCCCccc-c----ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc---cCC-ccc
Q 023142 16 FNAIKERELDLRGNKIAVI-E----NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR---INP-NIG 84 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~l-~----~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~---l~~-~~~ 84 (286)
..+++|++|++++|.++.. + ..+..+++|++|+|++|.+..++ .|..+++|++|+|++|++.+ ++. ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 7788899999999988842 2 22345888999999999998774 67888999999999998765 332 223
Q ss_pred cCCCCccEEEeecCcCCCCCCCc--cCCCCCCccEEEecCCcCCCC-CCchHHHHhhC---CCCcEEeCCCCChHHHHHH
Q 023142 85 EFLPKLHTLVLTNNRLVNLVEID--PLTSLPKLQFLSLLDNSITKK-PNYRLYVIHKL---KSLRVLDFKKVKNKERMEA 158 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~~~~~--~l~~l~~L~~L~L~~N~l~~i-p~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~ 158 (286)
..+++|++|++++|+|+.++... .++.+++|++|++++|.++.+ |. .+..+ ++|++|++++|.+..++
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~----~~~~~~~~~~L~~L~Ls~N~l~~lp-- 267 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP----SAPRCMWSSALNSLNLSFAGLEQVP-- 267 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS----CCSSCCCCTTCCCEECCSSCCCSCC--
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh----hHHhccCcCcCCEEECCCCCCCchh--
Confidence 57888999999999887665410 246778899999999998876 54 34444 68999999988754221
Q ss_pred HHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 023142 159 ASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
..+ ..+|+.+++++|+|+.+|. +..+++|++|++++|.++
T Consensus 268 -----------------------~~~--------~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 268 -----------------------KGL--------PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp -----------------------SCC--------CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred -----------------------hhh--------cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 000 1367788888888887654 577788888888888774
No 106
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=3.2e-18 Score=164.76 Aligned_cols=88 Identities=20% Similarity=0.276 Sum_probs=47.7
Q ss_pred CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142 5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG 84 (286)
Q Consensus 5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 84 (286)
+.+.|+..+. .+++|++|++++|+|+.+|. .+++|++|++++|.++.+|. .+++|+.|++++|+|+.+|..
T Consensus 69 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~-- 139 (622)
T 3g06_A 69 PDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL-- 139 (622)
T ss_dssp CSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCCC--
T ss_pred cCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCCC--
Confidence 3344444333 45667777777777776665 35666666666666666554 344555555555555544331
Q ss_pred cCCCCccEEEeecCcCCCC
Q 023142 85 EFLPKLHTLVLTNNRLVNL 103 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~ 103 (286)
+++|++|++++|.|+.+
T Consensus 140 --l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 140 --PPGLQELSVSDNQLASL 156 (622)
T ss_dssp --CTTCCEEECCSSCCSCC
T ss_pred --CCCCCEEECcCCcCCCc
Confidence 24444444444444443
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2e-16 Score=150.91 Aligned_cols=124 Identities=27% Similarity=0.333 Sum_probs=98.9
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 98 (286)
.|+.|++++|.|+.+|. +..+++|+.|+|++|.|+.+| .|+.+++|+.|+|++|+|+++| .+..+++|+.|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCC
Confidence 47788888888888887 777888888888888888887 6788888888888888888876 4567888888888888
Q ss_pred cCCCCC-CCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeC
Q 023142 99 RLVNLV-EIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147 (286)
Q Consensus 99 ~i~~~~-~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l 147 (286)
.|++++ + ..++.+++|+.|+|++|+++.+|......+..+++|+.|++
T Consensus 519 ~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 519 RLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCc-HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888874 3 47888888888888888888777655446667888888864
No 108
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=4.1e-16 Score=128.28 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=106.2
Q ss_pred cCHHHHhCCCCcCCCCCccEEEeeCCCCccccc--cccCCCCcCEEeccCCCCCCC-C-CCCCCCCCCeEeccCCcCccc
Q 023142 4 LTADLIWKSPHFFNAIKERELDLRGNKIAVIEN--LGATEDQFDTIDLSDNEIVKL-E-NMPHLNRLGTLIINNNRITRI 79 (286)
Q Consensus 4 Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~~~~l~~L~~L~Ls~N~l~~i-~-~~~~l~~L~~L~Ls~N~l~~l 79 (286)
++.+.++..+.-. ..+|+.|++++|+|+.++. .+..+++|++|+|++|.|+.+ | .|..+++|++|+|++|+|+++
T Consensus 15 ~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 93 (192)
T 1w8a_A 15 CTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93 (192)
T ss_dssp CTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred cCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc
Confidence 3444455544311 2489999999999998885 478899999999999999988 4 799999999999999999999
Q ss_pred CCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCC
Q 023142 80 NPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK 128 (286)
Q Consensus 80 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i 128 (286)
++..|..+++|++|++++|+|+++++ ..|..+++|++|++++|++...
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 94 SNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCS
T ss_pred CHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCc
Confidence 99888899999999999999999876 6899999999999999999843
No 109
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=5.8e-16 Score=146.86 Aligned_cols=131 Identities=27% Similarity=0.316 Sum_probs=105.5
Q ss_pred CCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++++.|++++|+++.++ ..+..+++|++|++++|.++.++ .|..+++|++|++++|+++.+++..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 56888888888888775 46777888888888888888774 5788888888888888888888777788888888888
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCCcCCC--CCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDNSITK--KPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~--ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
++|.++.+++ ..++++++|++|++++|.++. +|. .++.+++|++|++++|.+..
T Consensus 108 ~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~lp~----~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 108 VETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPE----YFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTSCCCCSTT-CSCTTCTTCCEEECCSSCCCCCCCCG----GGGGCTTCCEEECTTSCCCE
T ss_pred cccccccCCC-ccccccccccEEecCCCccceecChh----hhcccCCCCEEeCcCCccce
Confidence 8888888876 468888888888888888875 455 67888888888888887643
No 110
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=8.6e-16 Score=124.38 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=101.2
Q ss_pred CCCccEEEeeCCCCccccc-cccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 18 AIKERELDLRGNKIAVIEN-LGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
.++|+.|++++|+++.++. .+..+++|++|++++|.++.++ .|..+++|++|++++|+|+.+++..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4789999999999998874 5678999999999999999886 378999999999999999999998888999999999
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCC
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKP 129 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip 129 (286)
+++|.|+.+++ ..+..+++|++|++++|++....
T Consensus 107 l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 107 LDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred CcCCcceEeCH-HHhcCCcccCEEEecCCCeeccC
Confidence 99999999987 67889999999999999998543
No 111
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=6.5e-16 Score=146.08 Aligned_cols=137 Identities=19% Similarity=0.260 Sum_probs=104.7
Q ss_pred CCCcCCCCCccEEEeeCCCCcccc---ccccCCCCcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccc---
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIG--- 84 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~--- 84 (286)
+..+..+++|+.|++++|+++.++ ..+..+++|++|++++|+++.+| .+..+++|++|++++|+++.++....
T Consensus 354 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L 433 (549)
T 2z81_A 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL 433 (549)
T ss_dssp HTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTC
T ss_pred hhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCc
Confidence 334667778888888888887765 34666888888888888888776 56777777777777777776654321
Q ss_pred --------------cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142 85 --------------EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 85 --------------~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n 150 (286)
..+++|++|++++|+|+.+|. ...+++|++|++++|+++.++.. .+..+++|+.|++++|
T Consensus 434 ~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVPDG---IFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCCTT---GGGGCTTCCEEECCSS
T ss_pred eEEECCCCChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcCHH---HHhcCcccCEEEecCC
Confidence 257788888888888888775 45688899999999999987664 5789999999999999
Q ss_pred ChHH
Q 023142 151 KNKE 154 (286)
Q Consensus 151 ~~~~ 154 (286)
++..
T Consensus 508 ~~~~ 511 (549)
T 2z81_A 508 PWDC 511 (549)
T ss_dssp CBCC
T ss_pred CccC
Confidence 8643
No 112
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=147.63 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=111.8
Q ss_pred cCHHHHhC--CCCcCCCCCccEEEeeCCCCccc---cccccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCeEeccCCc
Q 023142 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVI---ENLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIINNNR 75 (286)
Q Consensus 4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l---~~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~Ls~N~ 75 (286)
++.+.+.. +..+.++++|+.|++++|+++.+ |..+..+++|++|++++|.++. +| .+..+++|+.|++++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 33444444 56677788888888888888743 4556778888888888888886 65 47778888888888888
Q ss_pred CcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 76 ITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 76 l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
+++..+..+ .++|++|++++|+|+.+|. .+..+++|++|++++|+++.+|.. .+..+++|++|++++|++...
T Consensus 411 l~~~~~~~l--~~~L~~L~Ls~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 411 LTDTIFRCL--PPRIKVLDLHSNKIKSIPK--QVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CCGGGGGSC--CTTCCEEECCSSCCCCCCG--GGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCBCCC
T ss_pred CCcchhhhh--cccCCEEECCCCcccccch--hhhcCCCCCEEECCCCcCCccCHH---HhccCCcccEEECcCCCCccc
Confidence 865433222 1689999999999998886 566899999999999999999874 478899999999999997543
No 113
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=1.6e-15 Score=122.39 Aligned_cols=108 Identities=25% Similarity=0.331 Sum_probs=88.7
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
..+.+++++|.++.+|..+ .++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3578888888888888655 378888888888888873 578888888888888888888888878888888888888
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
|+|+.+++ ..|..+++|++|+|++|++...+.
T Consensus 88 N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 88888876 568888888888888888875543
No 114
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.63 E-value=2.2e-15 Score=122.08 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=88.1
Q ss_pred ccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142 21 ERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (286)
Q Consensus 21 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 98 (286)
-+.+++++|.++.+|..+. ++|++|+|++|.|+.++ .|..+++|++|+|++|+|+.+++..|..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3678888888888886553 78888888888888773 5788888888888888888888887778888888888888
Q ss_pred cCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 99 RLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 99 ~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
+|+.+++ ..|..+++|++|+|++|++...+.
T Consensus 92 ~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 8888876 568888888888888888886654
No 115
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=5.4e-16 Score=147.08 Aligned_cols=148 Identities=21% Similarity=0.214 Sum_probs=123.5
Q ss_pred cCHHHHhC--CCCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcc
Q 023142 4 LTADLIWK--SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITR 78 (286)
Q Consensus 4 Lt~~~i~~--~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~ 78 (286)
|+.+.++. +..|.++++|++|++++|+++.++ ..+..+++|++|+|++|.++.++ .|.++++|++|++++|+++.
T Consensus 35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 114 (570)
T 2z63_A 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114 (570)
T ss_dssp CCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC
T ss_pred ccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc
Confidence 44444543 447899999999999999999886 67888999999999999999875 68999999999999999999
Q ss_pred cCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC----cEEeCCCCChHH
Q 023142 79 INPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL----RVLDFKKVKNKE 154 (286)
Q Consensus 79 l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L----~~L~l~~n~~~~ 154 (286)
+++..+..+++|++|++++|.++.+.-...|+++++|++|++++|.++.++.. .++.+++| ..|++++|.+..
T Consensus 115 l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG---GGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH---HccchhccchhhhhcccCCCCcee
Confidence 98867889999999999999999743114799999999999999999987654 45555555 778888887543
No 116
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=1e-15 Score=145.51 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=99.8
Q ss_pred CCCcCCCCCccEEEeeCCCCcccc---ccccCCCCcCEEeccCCCCCC-CC--CCCCCCCCCeEeccCCcCcccCCcccc
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIE---NLGATEDQFDTIDLSDNEIVK-LE--NMPHLNRLGTLIINNNRITRINPNIGE 85 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~---~~~~~l~~L~~L~Ls~N~l~~-i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 85 (286)
+..+.++++|+.|++++|+++.++ ..+..+++|++|++++|.++. +| .+..+++|+.|++++|++++..+ .
T Consensus 370 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~ 446 (562)
T 3a79_B 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---R 446 (562)
T ss_dssp TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---S
T ss_pred hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---h
Confidence 455666677777777777776543 345566777777777777765 54 36667777777777777654322 2
Q ss_pred CC-CCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 86 FL-PKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 86 ~l-~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
.+ ++|++|++++|+|+.+|. .+..+++|++|++++|+++.+|.. .+..+++|+.|++++|++..
T Consensus 447 ~l~~~L~~L~L~~N~l~~ip~--~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 447 CLPPKVKVLDLHNNRIMSIPK--DVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SCCTTCSEEECCSSCCCCCCT--TTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCCCEECCSCCBCC
T ss_pred hhcCcCCEEECCCCcCcccCh--hhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCCEEEecCCCcCC
Confidence 33 588999999999998886 455899999999999999999884 47899999999999998753
No 117
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=1.7e-17 Score=149.03 Aligned_cols=210 Identities=13% Similarity=0.139 Sum_probs=152.4
Q ss_pred cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCc-ccCCccccCCCCcc
Q 023142 15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRIT-RINPNIGEFLPKLH 91 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~ 91 (286)
+..|.. +.++.++++++.||..+ .+++++|+|++|+|+.+| .|.++++|++|+|++|++. .+++..|.+++++.
T Consensus 6 ~C~C~~-~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 6 ICHCSN-RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp SSEEET-TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred ccEeeC-CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 444433 67899999999999765 468999999999999997 5899999999999999985 47778888998876
Q ss_pred E-EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC-ChHHHHHHHHHhhcchhHH
Q 023142 92 T-LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV-KNKERMEAASLFASEEMEE 169 (286)
Q Consensus 92 ~-L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~ 169 (286)
. +.+++|+|+.+++ ..|.++++|++|++++|++..++.. .+....++..|++.++ .+..++. ..|.+....
T Consensus 83 ~~l~~~~N~l~~l~~-~~f~~l~~L~~L~l~~n~l~~~~~~---~~~~~~~l~~l~l~~~~~i~~l~~--~~f~~~~~~- 155 (350)
T 4ay9_X 83 EIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV---HKIHSLQKVLLDIQDNINIHTIER--NSFVGLSFE- 155 (350)
T ss_dssp EEEEEEETTCCEECT-TSBCCCTTCCEEEEEEECCSSCCCC---TTCCBSSCEEEEEESCTTCCEECT--TSSTTSBSS-
T ss_pred hhhcccCCcccccCc-hhhhhccccccccccccccccCCch---hhcccchhhhhhhccccccccccc--cchhhcchh-
Confidence 5 6777899999987 7899999999999999999998875 4556677888888664 4432211 012221100
Q ss_pred HHHhhhcccCCCCCCCCCChh-hhccCCccCCCCH-HHHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCCcc
Q 023142 170 EAKKESMKTLMPVEVPNVSEE-EEQQTPKVVAPTP-EQIIAIKA-AIVNSQTLEEVARLEKVLKSGQLPADLKI 240 (286)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~ls~-n~l~~ip~-~i~~~~~L~~l~l~~N~l~~g~iP~~~~~ 240 (286)
+.........+..++.. ....++..+.+.+ |.++.||. ++..+++|++|++++|.+ ..||.....
T Consensus 156 ----l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~~~~ 223 (350)
T 4ay9_X 156 ----SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLE 223 (350)
T ss_dssp ----CEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSSSCT
T ss_pred ----hhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChhhhc
Confidence 00011111111111111 2356788888874 78889985 679999999999999999 468876544
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.7e-16 Score=155.59 Aligned_cols=185 Identities=17% Similarity=0.109 Sum_probs=117.1
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCE-----EeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDT-----IDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~-----L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
+.++.|+|.+|.+..++........|.. ++++.|.+...+ .|..++.|+.|+|++|.+..++..++ .+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTR 251 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCE
Confidence 5678899999998876644322222222 333444444333 58899999999999999999988887 8999999
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHH
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAK 172 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 172 (286)
|+|++|.|+.+|. .|+++++|++|+|++|.|+.+|. .++.+++|++|++++|.+..+
T Consensus 252 L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~l----------------- 308 (727)
T 4b8c_D 252 LYLNGNSLTELPA--EIKNLSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYFFDNMVTTL----------------- 308 (727)
T ss_dssp CBCTTSCCSCCCG--GGGGGTTCCEEECTTSCCSSCCS----SGGGGTTCSEEECCSSCCCCC-----------------
T ss_pred EEeeCCcCcccCh--hhhCCCCCCEEeCcCCcCCccCh----hhcCCCCCCEEECCCCCCCcc-----------------
Confidence 9999999998876 78999999999999999999998 689999999999999975421
Q ss_pred hhhcccCCCCCCCCCChhhhccCCccCCCCHHHHH-HHHHHHHhcC-CHHHHHHHHHHHhcCCCCCCCccCC
Q 023142 173 KESMKTLMPVEVPNVSEEEEQQTPKVVAPTPEQII-AIKAAIVNSQ-TLEEVARLEKVLKSGQLPADLKIPD 242 (286)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls~n~l~-~ip~~i~~~~-~L~~l~l~~N~l~~g~iP~~~~~~~ 242 (286)
|..+ +.+.+|+.|+|++|.|+ .+|..+..+. .+..+++.+|.+. |.+|..+....
T Consensus 309 --------p~~~------~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~-~~~p~~l~~l~ 365 (727)
T 4b8c_D 309 --------PWEF------GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE-IPLPHERRFIE 365 (727)
T ss_dssp --------CSST------TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCC-----
T ss_pred --------Chhh------hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc-CcCccccceeE
Confidence 1111 24778999999999999 7777776653 3345789999994 89998776554
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1.4e-18 Score=143.67 Aligned_cols=130 Identities=21% Similarity=0.273 Sum_probs=91.6
Q ss_pred CccEEEeeCC--CCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 20 KERELDLRGN--KIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 20 ~L~~L~Ls~n--~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
.|+.+.+++. .++.+|..+..+++|++|++++|.++.+|.+..+++|++|++++|+++.+|. .+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcC
Confidence 3444455443 4455555677778888888888888777777777888888888888887754 334567788888888
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
|.|++++ .+..+++|++|++++|+++.++.. ..+..+++|++|++++|.+...
T Consensus 103 N~l~~l~---~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 103 NQIASLS---GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EECCCHH---HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCHHHHH
T ss_pred CcCCcCC---ccccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCccccc
Confidence 8887764 366777788888888887765431 1567778888888888877554
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=7.4e-16 Score=124.79 Aligned_cols=142 Identities=20% Similarity=0.202 Sum_probs=114.6
Q ss_pred ccCCCCcCEEeccCCCCCCCCCCCCCC-CCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCcc
Q 023142 38 GATEDQFDTIDLSDNEIVKLENMPHLN-RLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ 116 (286)
Q Consensus 38 ~~~l~~L~~L~Ls~N~l~~i~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~ 116 (286)
+..+.+|++|++++|.++.++.+..+. +|++|++++|+|+++ ..+..+++|++|++++|.|+.+++ ..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE-GLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS-CHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc-chhhcCCCCC
Confidence 445889999999999999998777666 999999999999998 345789999999999999999886 4568999999
Q ss_pred EEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCC
Q 023142 117 FLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTP 196 (286)
Q Consensus 117 ~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (286)
+|++++|.+..+|... .+..+++|++|++++|.+...+.... ... ..+++|
T Consensus 92 ~L~L~~N~i~~~~~~~--~l~~l~~L~~L~l~~N~i~~~~~~~~--------~~~-------------------~~l~~L 142 (176)
T 1a9n_A 92 ELILTNNSLVELGDLD--PLASLKSLTYLCILRNPVTNKKHYRL--------YVI-------------------YKVPQV 142 (176)
T ss_dssp EEECCSCCCCCGGGGG--GGGGCTTCCEEECCSSGGGGSTTHHH--------HHH-------------------HHCTTC
T ss_pred EEECCCCcCCcchhhH--hhhcCCCCCEEEecCCCCCCcHhHHH--------HHH-------------------HHCCcc
Confidence 9999999999887621 47899999999999998764321100 001 135678
Q ss_pred ccCCCCHHHHHHHHH
Q 023142 197 KVVAPTPEQIIAIKA 211 (286)
Q Consensus 197 ~~l~ls~n~l~~ip~ 211 (286)
+.++++.|.+.....
T Consensus 143 ~~Ld~~~n~~~~~~~ 157 (176)
T 1a9n_A 143 RVLDFQKVKLKERQE 157 (176)
T ss_dssp SEETTEECCHHHHHH
T ss_pred ceeCCCcCCHHHHHH
Confidence 899999888875543
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=5e-15 Score=141.05 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=83.1
Q ss_pred CccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCc
Q 023142 20 KERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNR 99 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 99 (286)
+|+.|++++|.|+.+|. .+++|++|++++|.|+.+|. .+++|+.|+|++|+|+++|. +. ++|+.|+|++|.
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNL 191 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSC
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCC
Confidence 45555555555555554 35566666666666666654 45677777777777777765 33 778888888888
Q ss_pred CCCCCCCccCCCCCCc-------cEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 100 LVNLVEIDPLTSLPKL-------QFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 100 i~~~~~~~~l~~l~~L-------~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
|+.+|. +.. +| +.|+|++|+|+.+|. .+..+++|+.|++++|++...
T Consensus 192 L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 192 LESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp CSSCCC---CC----------CCEEEECCSSCCCCCCG----GGGGSCTTEEEECCSSSCCHH
T ss_pred CCchhh---HHH--hhhcccccceEEecCCCcceecCH----HHhcCCCCCEEEeeCCcCCCc
Confidence 887765 332 56 999999999999988 577799999999999998654
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=7.7e-15 Score=118.33 Aligned_cols=105 Identities=27% Similarity=0.325 Sum_probs=95.9
Q ss_pred CcCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEec
Q 023142 43 QFDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLL 121 (286)
Q Consensus 43 ~L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~ 121 (286)
..+.+++++|.++.+| .+ .++|++|+|++|+|+++++..|..+++|++|+|++|+|+.+++ ..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA-GVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh-hhccCCCCCCEEECC
Confidence 3578999999999998 44 3899999999999999998888999999999999999999997 678999999999999
Q ss_pred CCcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 122 DNSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 122 ~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
+|+|+.++.. .+..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRG---AFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTT---TTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHH---HhcCCCCCCEEEeCCCCCC
Confidence 9999999874 5889999999999999864
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=7.1e-16 Score=123.70 Aligned_cols=126 Identities=21% Similarity=0.223 Sum_probs=106.5
Q ss_pred cCHHHHh--C-CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCC-CCC-CCCCCCCCeEeccCCcCcc
Q 023142 4 LTADLIW--K-SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK-LEN-MPHLNRLGTLIINNNRITR 78 (286)
Q Consensus 4 Lt~~~i~--~-~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~-~~~l~~L~~L~Ls~N~l~~ 78 (286)
++.+.+. . |..+..+++|++|++++|.|+.+ ..+..+++|++|++++|.++. +|. +..+++|++|++++|+|++
T Consensus 31 l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD 109 (168)
T ss_dssp CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS
T ss_pred CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc
Confidence 3444454 3 44467889999999999999988 677789999999999999998 664 4569999999999999999
Q ss_pred cCC-ccccCCCCccEEEeecCcCCCCCCC--ccCCCCCCccEEEecCCcCCCCCC
Q 023142 79 INP-NIGEFLPKLHTLVLTNNRLVNLVEI--DPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 79 l~~-~~~~~l~~L~~L~Ls~N~i~~~~~~--~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
++. ..+..+++|++|++++|.|+.+++. ..+..+++|++|++++|.+..+|.
T Consensus 110 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 110 ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 864 5667999999999999999998741 258899999999999999998876
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1e-14 Score=118.12 Aligned_cols=104 Identities=23% Similarity=0.356 Sum_probs=95.4
Q ss_pred cCEEeccCCCCCCCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecC
Q 023142 44 FDTIDLSDNEIVKLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122 (286)
Q Consensus 44 L~~L~Ls~N~l~~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~ 122 (286)
-+.+++++|.++.+| .+. ++|+.|+|++|+|+++++..|..+++|++|+|++|+|+.+++ ..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh-hHhCCcchhhEEECCC
Confidence 478999999999998 454 899999999999999998888999999999999999999987 6789999999999999
Q ss_pred CcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 123 NSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 123 N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
|+|+.++.. .+..+++|++|++++|++.
T Consensus 91 N~l~~l~~~---~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRG---AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTT---TTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHH---HhccccCCCEEEeCCCCcc
Confidence 999999874 5889999999999999875
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.58 E-value=4.5e-17 Score=146.82 Aligned_cols=206 Identities=13% Similarity=0.087 Sum_probs=126.2
Q ss_pred CCCccEEEeeCCCCcccc-----ccccCCC-CcCEEeccCCCCCCCC--CCCCC-----CCCCeEeccCCcCcccCCcc-
Q 023142 18 AIKERELDLRGNKIAVIE-----NLGATED-QFDTIDLSDNEIVKLE--NMPHL-----NRLGTLIINNNRITRINPNI- 83 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~-----~~~~~l~-~L~~L~Ls~N~l~~i~--~~~~l-----~~L~~L~Ls~N~l~~l~~~~- 83 (286)
.++|++|++++|.|+.++ ..+..++ +|++|+|++|.++... .+..+ ++|++|+|++|+++..++..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 345889999999888665 4556677 8889999998888653 34332 88888999998888766542
Q ss_pred ---ccCC-CCccEEEeecCcCCCCCCCcc----CCC-CCCccEEEecCCcCCCCCCchH-HHHhhCC-CCcEEeCCCCCh
Q 023142 84 ---GEFL-PKLHTLVLTNNRLVNLVEIDP----LTS-LPKLQFLSLLDNSITKKPNYRL-YVIHKLK-SLRVLDFKKVKN 152 (286)
Q Consensus 84 ---~~~l-~~L~~L~Ls~N~i~~~~~~~~----l~~-l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~-~L~~L~l~~n~~ 152 (286)
+..+ ++|++|++++|.|+..+. .. +.. .++|++|++++|.++......+ ..+..++ +|++|++++|.+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3344 788888888888877654 23 333 3588888888888875432211 1455565 888888888887
Q ss_pred HHHHHHH--HHhhcchhHHHHHhhhcccCCCCCCCC-----CChh-hh-ccCCccCCCCHHHHHH-----HHHHHHhcCC
Q 023142 153 KERMEAA--SLFASEEMEEEAKKESMKTLMPVEVPN-----VSEE-EE-QQTPKVVAPTPEQIIA-----IKAAIVNSQT 218 (286)
Q Consensus 153 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~-~~~l~~l~ls~n~l~~-----ip~~i~~~~~ 218 (286)
....... ..+.... ..+....+....+.+ ++.. .. ..+|+.+++++|.++. +...+..+++
T Consensus 180 ~~~~~~~l~~~l~~~~-----~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 180 ASKNCAELAKFLASIP-----ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp GGSCHHHHHHHHHTSC-----TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred chhhHHHHHHHHHhCC-----CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 5432111 0111100 001111111111110 1111 11 2368888888888753 3344466788
Q ss_pred HHHHHHHHHHH
Q 023142 219 LEEVARLEKVL 229 (286)
Q Consensus 219 L~~l~l~~N~l 229 (286)
|++|++++|.+
T Consensus 255 L~~L~L~~n~l 265 (362)
T 3goz_A 255 LQTVYLDYDIV 265 (362)
T ss_dssp CSEEEEEHHHH
T ss_pred ccEEEeccCCc
Confidence 88888888885
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.57 E-value=6.4e-18 Score=152.39 Aligned_cols=209 Identities=18% Similarity=0.110 Sum_probs=142.9
Q ss_pred CcCCCC-CccEEEeeCCCCccc-cccccCC-----CCcCEEeccCCCCCCCC--C----CCCC-CCCCeEeccCCcCccc
Q 023142 14 HFFNAI-KERELDLRGNKIAVI-ENLGATE-----DQFDTIDLSDNEIVKLE--N----MPHL-NRLGTLIINNNRITRI 79 (286)
Q Consensus 14 ~~~~l~-~L~~L~Ls~n~l~~l-~~~~~~l-----~~L~~L~Ls~N~l~~i~--~----~~~l-~~L~~L~Ls~N~l~~l 79 (286)
.+.+++ +|++|++++|.|+.. +..+..+ ++|++|+|++|.++..+ . +..+ ++|++|++++|+++..
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 456777 899999999999865 3444433 89999999999998664 1 4455 8999999999999988
Q ss_pred CCccc----cC-CCCccEEEeecCcCCCCCC---CccCCCCC-CccEEEecCCcCCCCCCchHH-HHhhC-CCCcEEeCC
Q 023142 80 NPNIG----EF-LPKLHTLVLTNNRLVNLVE---IDPLTSLP-KLQFLSLLDNSITKKPNYRLY-VIHKL-KSLRVLDFK 148 (286)
Q Consensus 80 ~~~~~----~~-l~~L~~L~Ls~N~i~~~~~---~~~l~~l~-~L~~L~L~~N~l~~ip~~~~~-~l~~l-~~L~~L~l~ 148 (286)
+...+ .. .++|++|++++|.|+.... ...+..++ +|++|++++|+++......+. .+..+ ++|++|+++
T Consensus 125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 76432 33 3699999999999985432 01234555 899999999999876543222 45566 599999999
Q ss_pred CCChHH-----HHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCCh-----h-hhccCCccCCCCHHH--------HHHH
Q 023142 149 KVKNKE-----RMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSE-----E-EEQQTPKVVAPTPEQ--------IIAI 209 (286)
Q Consensus 149 ~n~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~l~~l~ls~n~--------l~~i 209 (286)
+|.+.. ++.+..... ..+....+....+...+. . ..+.+|+.++++.|. +..+
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~--------~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIP--------NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSC--------TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCCChhHHHHHHHHHhcCC--------CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 999876 221111100 011111111112221111 0 345789999999998 5566
Q ss_pred HHHHHhcCCHHHHHHHHHHHh
Q 023142 210 KAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 210 p~~i~~~~~L~~l~l~~N~l~ 230 (286)
+..+.++++|++|++++|.+.
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCC
T ss_pred HHHhccCCceEEEecCCCcCC
Confidence 667788899999999888874
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=2.2e-14 Score=133.29 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=75.2
Q ss_pred CHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc
Q 023142 5 TADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG 84 (286)
Q Consensus 5 t~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 84 (286)
+.+.++..+.|.++++|++|++++|+++.+|... .+|++|++++|.++.+|.+..+++|++|++++|+++++|..
T Consensus 139 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~-- 213 (454)
T 1jl5_A 139 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL-- 213 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred cCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCC--
Confidence 3344444446777777777777777777666543 46777777777777777777777777777777777765432
Q ss_pred cCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 85 EFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
.++|++|++++|.++.+|. ++.+++|++|++++|+++.+|.
T Consensus 214 --~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 214 --PLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp --CTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCS
T ss_pred --cCcccEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCcccc
Confidence 2356666666666665543 5566666777776666666554
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.51 E-value=1.8e-14 Score=137.37 Aligned_cols=118 Identities=22% Similarity=0.241 Sum_probs=103.7
Q ss_pred ccCHHHHhCCCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccC-C
Q 023142 3 RLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRIN-P 81 (286)
Q Consensus 3 ~Lt~~~i~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~-~ 81 (286)
.|+.+.|+..+.+.++++|+.|+|++|.|+.+|..++.+++|++|+|++|.|+.+|.++.+++|+.|+|++|+|++++ +
T Consensus 447 ~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 447 HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp ECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTT
T ss_pred EecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCc
Confidence 456667777777999999999999999999999999999999999999999999999999999999999999999996 6
Q ss_pred ccccCCCCccEEEeecCcCCCCCCCc--cCCCCCCccEEEe
Q 023142 82 NIGEFLPKLHTLVLTNNRLVNLVEID--PLTSLPKLQFLSL 120 (286)
Q Consensus 82 ~~~~~l~~L~~L~Ls~N~i~~~~~~~--~l~~l~~L~~L~L 120 (286)
..+..+++|+.|++++|.|+++++.. .+..+++|+.|++
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 66789999999999999999987611 1234889999864
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=1.5e-14 Score=113.64 Aligned_cols=108 Identities=26% Similarity=0.269 Sum_probs=94.6
Q ss_pred CCCcCEEeccCCCCC--CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccE
Q 023142 41 EDQFDTIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQF 117 (286)
Q Consensus 41 l~~L~~L~Ls~N~l~--~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~ 117 (286)
.++|+.|++++|.++ .+| .+..+++|++|++++|+++.+ ..+..+++|++|++++|.|++..+ ..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLE-VLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTH-HHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHH-HHhhhCCCCCE
Confidence 578999999999999 777 578999999999999999998 446789999999999999998433 36777999999
Q ss_pred EEecCCcCCCCC--CchHHHHhhCCCCcEEeCCCCChHHH
Q 023142 118 LSLLDNSITKKP--NYRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 118 L~L~~N~l~~ip--~~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
|++++|+++.++ . .+..+++|++|++++|.+...
T Consensus 93 L~ls~N~i~~~~~~~----~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 93 LNLSGNKIKDLSTIE----PLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp EECTTSCCCSHHHHG----GGGGCTTCCEEECTTCGGGGS
T ss_pred EECCCCcCCChHHHH----HHhhCCCCCEEeCcCCcccch
Confidence 999999999865 4 689999999999999987654
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1.2e-16 Score=142.01 Aligned_cols=126 Identities=16% Similarity=0.093 Sum_probs=62.8
Q ss_pred CCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCC--CC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEe
Q 023142 19 IKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVK--LE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVL 95 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~--i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 95 (286)
++++.|++++|.++..+..+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 34555555555555443333345555555555555542 32 3445555555555555555433333344555555555
Q ss_pred ecC-cCCC--CCCCccCCCCCCccEEEecCC-cCCC--CCCchHHHHhhCC-CCcEEeCCCC
Q 023142 96 TNN-RLVN--LVEIDPLTSLPKLQFLSLLDN-SITK--KPNYRLYVIHKLK-SLRVLDFKKV 150 (286)
Q Consensus 96 s~N-~i~~--~~~~~~l~~l~~L~~L~L~~N-~l~~--ip~~~~~~l~~l~-~L~~L~l~~n 150 (286)
++| .++. ++. .+.++++|++|++++| .++. ++. .+..++ +|++|++++|
T Consensus 150 ~~~~~l~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFALQT--LLSSCSRLDELNLSWCFDFTEKHVQV----AVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHHHHH--HHHHCTTCCEEECCCCTTCCHHHHHH----HHHHSCTTCCEEECCSC
T ss_pred CCCCCCCHHHHHH--HHhcCCCCCEEcCCCCCCcChHHHHH----HHHhcccCCCEEEeCCC
Confidence 555 3442 221 3445555555555555 5542 222 445555 5555555555
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=5.8e-16 Score=137.46 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=105.8
Q ss_pred CccEEEeeCCCCccccccccCC--CCcCEEeccCCCCCCC-CCCCCCCCCCeEeccCCcCccc-CCccccCCCCccEEEe
Q 023142 20 KERELDLRGNKIAVIENLGATE--DQFDTIDLSDNEIVKL-ENMPHLNRLGTLIINNNRITRI-NPNIGEFLPKLHTLVL 95 (286)
Q Consensus 20 ~L~~L~Ls~n~l~~l~~~~~~l--~~L~~L~Ls~N~l~~i-~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~L 95 (286)
.++.++++++.+. +..+..+ +.++.|++++|.+... +.+..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4789999999887 4444445 8999999999999976 4678899999999999998863 3455678999999999
Q ss_pred ecCcCCCCCCCccCCCCCCccEEEecCC-cCCC--CCCchHHHHhhCCCCcEEeCCCC-ChHH
Q 023142 96 TNNRLVNLVEIDPLTSLPKLQFLSLLDN-SITK--KPNYRLYVIHKLKSLRVLDFKKV-KNKE 154 (286)
Q Consensus 96 s~N~i~~~~~~~~l~~l~~L~~L~L~~N-~l~~--ip~~~~~~l~~l~~L~~L~l~~n-~~~~ 154 (286)
++|.++.... ..++.+++|++|++++| .++. ++. .+..+++|++|++++| .+..
T Consensus 126 ~~~~l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~~----~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 126 EGLRLSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQT----LLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp TTCBCCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHHH----HHHHCTTCCEEECCCCTTCCH
T ss_pred cCcccCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHHH----HHhcCCCCCEEcCCCCCCcCh
Confidence 9999885433 46888999999999999 6763 444 6889999999999999 7764
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.50 E-value=1e-15 Score=136.08 Aligned_cols=128 Identities=14% Similarity=0.151 Sum_probs=90.0
Q ss_pred CCCccEEEeeCCCCc--------------------ccc-ccccC--------CCCcCEEeccCCCCCCCC--CCCCCCCC
Q 023142 18 AIKERELDLRGNKIA--------------------VIE-NLGAT--------EDQFDTIDLSDNEIVKLE--NMPHLNRL 66 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~--------------------~l~-~~~~~--------l~~L~~L~Ls~N~l~~i~--~~~~l~~L 66 (286)
+++|+.|+|++|+|. .+| ..|.+ +++|+.|+|.+ .++.|+ .|.+|++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678999999999988 344 45566 88999999988 888885 68899999
Q ss_pred CeEeccCCcCcccCCccccCCCCccEEEeecCc----CCCCCCCccC---------------------------------
Q 023142 67 GTLIINNNRITRINPNIGEFLPKLHTLVLTNNR----LVNLVEIDPL--------------------------------- 109 (286)
Q Consensus 67 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~----i~~~~~~~~l--------------------------------- 109 (286)
+.+++++|.+..+++..|.++.++..+.+..+. ...+.. ..|
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~-~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~ 205 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH-FAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDIN 205 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-SCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCS
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-cccccccccceeEEecCCCcHHHHHhhcccCccccc
Confidence 999999998888887777776666655544421 111111 011
Q ss_pred -----------------CCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142 110 -----------------TSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 110 -----------------~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n 150 (286)
..|++|+.+++++|.++.|+.+ +|..|.+|+.+++..|
T Consensus 206 ~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 206 FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT
T ss_pred eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc
Confidence 0266777777777777777766 6777777777777765
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=3.8e-16 Score=128.89 Aligned_cols=135 Identities=30% Similarity=0.372 Sum_probs=114.8
Q ss_pred CcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCC-CCCCCCCCeEeccCCcCcccCCccccCCCCccE
Q 023142 14 HFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLEN-MPHLNRLGTLIINNNRITRINPNIGEFLPKLHT 92 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 92 (286)
.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|. +..+++|++|++++|++++++ . +..+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~-~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G-IEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H-HHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c-cccCCCCCE
Confidence 5778899999999999999998 77789999999999999999884 566799999999999999986 3 568899999
Q ss_pred EEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCC-------CCchHHHHhhCCCCcEEeCCCCC
Q 023142 93 LVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKK-------PNYRLYVIHKLKSLRVLDFKKVK 151 (286)
Q Consensus 93 L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~i-------p~~~~~~l~~l~~L~~L~l~~n~ 151 (286)
|++++|.|+.++.+..+..+++|++|++++|++... ..++...+..+++|+.||.....
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~ 185 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence 999999999876534688999999999999999754 23344468999999999844333
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.46 E-value=1.8e-13 Score=122.15 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=91.4
Q ss_pred cEEEeeCC-CCccccccccCCCCcCEEeccC-CCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeec
Q 023142 22 RELDLRGN-KIAVIENLGATEDQFDTIDLSD-NEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTN 97 (286)
Q Consensus 22 ~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~-N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 97 (286)
..++++++ +|+.+|. +..+++|++|+|++ |.|+.++ .|..+++|+.|+|++|+|+++++..|..+++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35688888 8999999 88888999999996 9999886 588999999999999999999988888999999999999
Q ss_pred CcCCCCCCCccCCCCCCccEEEecCCcCCCCCC
Q 023142 98 NRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPN 130 (286)
Q Consensus 98 N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~ 130 (286)
|+|+.+++ ..|..++ |+.|+|.+|++.....
T Consensus 90 N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSW-KTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCH-HHcccCC-ceEEEeeCCCccCCCc
Confidence 99999887 5666665 9999999999886543
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.45 E-value=7.1e-16 Score=142.60 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=105.5
Q ss_pred cCCCCCccEEEeeCCCCcccc-ccc-----cCCCCcCEEeccCCCCCCC-----C-CCCCCCCCCeEeccCCcCcccC--
Q 023142 15 FFNAIKERELDLRGNKIAVIE-NLG-----ATEDQFDTIDLSDNEIVKL-----E-NMPHLNRLGTLIINNNRITRIN-- 80 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~-~~~-----~~l~~L~~L~Ls~N~l~~i-----~-~~~~l~~L~~L~Ls~N~l~~l~-- 80 (286)
+..+++|+.|++++|.++... ..+ ...++|++|++++|.++.. + .+..+++|+.|++++|+++...
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 445667777777777776321 111 1245677777777776652 2 3455667777777777665532
Q ss_pred ---CccccCCCCccEEEeecCcCCC-----CCCCccCCCCCCccEEEecCCcCCCCCCc---------------------
Q 023142 81 ---PNIGEFLPKLHTLVLTNNRLVN-----LVEIDPLTSLPKLQFLSLLDNSITKKPNY--------------------- 131 (286)
Q Consensus 81 ---~~~~~~l~~L~~L~Ls~N~i~~-----~~~~~~l~~l~~L~~L~L~~N~l~~ip~~--------------------- 131 (286)
+..+..+++|++|++++|.|+. ++. .+..+++|++|++++|.+......
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 2233345666666666666665 222 344456666666666655422111
Q ss_pred ---------hHHHHhhCCCCcEEeCCCCChHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCCCChhhhccCCccCCCC
Q 023142 132 ---------RLYVIHKLKSLRVLDFKKVKNKERMEAASLFASEEMEEEAKKESMKTLMPVEVPNVSEEEEQQTPKVVAPT 202 (286)
Q Consensus 132 ---------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ls 202 (286)
....+..+++|++|++++|.+.+.... .+...+. ....+|+.++++
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~----------~l~~~l~---------------~~~~~L~~L~L~ 378 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR----------ELCQGLG---------------QPGSVLRVLWLA 378 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH----------HHHHHHT---------------STTCCCCEEECT
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCCccccccHH----------HHHHHHc---------------CCCCceEEEECC
Confidence 001333444444444444444322100 0000000 003367888888
Q ss_pred HHHHH-----HHHHHHHhcCCHHHHHHHHHHHh
Q 023142 203 PEQII-----AIKAAIVNSQTLEEVARLEKVLK 230 (286)
Q Consensus 203 ~n~l~-----~ip~~i~~~~~L~~l~l~~N~l~ 230 (286)
+|+++ .+|..+..+++|++|++++|.+.
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 88777 78999999999999999998874
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.44 E-value=1.2e-15 Score=140.95 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=69.1
Q ss_pred CcCCCCCccEEEeeCCCCccc--cccccCCC----CcCEEeccCCCCCC-----CC-CCCCCCCCCeEeccCCcCcccCC
Q 023142 14 HFFNAIKERELDLRGNKIAVI--ENLGATED----QFDTIDLSDNEIVK-----LE-NMPHLNRLGTLIINNNRITRINP 81 (286)
Q Consensus 14 ~~~~l~~L~~L~Ls~n~l~~l--~~~~~~l~----~L~~L~Ls~N~l~~-----i~-~~~~l~~L~~L~Ls~N~l~~l~~ 81 (286)
.+..+++|++|++++|.++.. ......+. +|++|++++|.++. ++ .+..+++|++|++++|.++....
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 355667888888888888642 22223344 68888888888874 23 56777888888888888765322
Q ss_pred -----ccccCCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCC
Q 023142 82 -----NIGEFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT 126 (286)
Q Consensus 82 -----~~~~~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~ 126 (286)
..+...++|++|++++|.++.... ...+..+++|++|++++|.+.
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 112234567777777776664220 013444566666666666654
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=5.3e-13 Score=119.13 Aligned_cols=104 Identities=18% Similarity=0.218 Sum_probs=93.7
Q ss_pred CEEeccCC-CCCCCCCCCCCCCCCeEeccC-CcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecC
Q 023142 45 DTIDLSDN-EIVKLENMPHLNRLGTLIINN-NRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122 (286)
Q Consensus 45 ~~L~Ls~N-~l~~i~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~ 122 (286)
..++++++ .++.+|.+..+++|+.|+|++ |+|+.+++..|..+++|+.|+|++|.|+++++ ..|.++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCC
Confidence 45689998 999998899999999999996 99999999889999999999999999999987 7899999999999999
Q ss_pred CcCCCCCCchHHHHhhCCCCcEEeCCCCChH
Q 023142 123 NSITKKPNYRLYVIHKLKSLRVLDFKKVKNK 153 (286)
Q Consensus 123 N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~ 153 (286)
|+|+.+|.. .+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~---~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWK---TVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCST---TTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHH---HcccCC-ceEEEeeCCCcc
Confidence 999999874 344454 999999999975
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=1.7e-12 Score=115.20 Aligned_cols=87 Identities=20% Similarity=0.071 Sum_probs=62.5
Q ss_pred CCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCcc-EEEecCCcCCCCCCchHHHHhhCCC
Q 023142 63 LNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQ-FLSLLDNSITKKPNYRLYVIHKLKS 141 (286)
Q Consensus 63 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~-~L~L~~N~l~~ip~~~~~~l~~l~~ 141 (286)
+++|+.++|++|+++.++...|.+|++|+.+++.+| ++.++. ..|.+|++|+ .+.+.+ .++.|+.+ +|..|++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEECTT---TTTTCTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEchh---hhhCCcc
Confidence 567777777777777777777777777777777776 776766 6777777777 777776 66666655 6777777
Q ss_pred CcEEeCCCCChHHH
Q 023142 142 LRVLDFKKVKNKER 155 (286)
Q Consensus 142 L~~L~l~~n~~~~~ 155 (286)
|+.+++.+|.+..+
T Consensus 299 L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 299 LRYVLATGDKITTL 312 (329)
T ss_dssp EEEEEECSSCCCEE
T ss_pred CCEEEeCCCccCcc
Confidence 77777776665443
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=3.6e-12 Score=115.32 Aligned_cols=137 Identities=16% Similarity=0.064 Sum_probs=90.4
Q ss_pred CCccEEEeeCCCCcc--ccccccCCCCcCEEeccCCCCCCCC--CC-----CCCCCCCeEeccCCcCcccCC----cccc
Q 023142 19 IKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVKLE--NM-----PHLNRLGTLIINNNRITRINP----NIGE 85 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i~--~~-----~~l~~L~~L~Ls~N~l~~l~~----~~~~ 85 (286)
++|+.|+|++|.|+. +......+++|+.|+|++|.|+... .+ ...++|+.|+|++|.|+.... ..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 578888888887763 2233334567888888888776432 22 346788888888888876322 2224
Q ss_pred CCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCCCCCCchH-HHHhhCCCCcEEeCCCCChHHH
Q 023142 86 FLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 86 ~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
.+++|++|+|++|.|+.... ...+..+++|+.|+|++|.|+......+ ..+..+++|++|++++|.+.+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 67788888888888765320 0245566788888888888875332211 1466778888888888887654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=1.4e-12 Score=118.02 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=94.2
Q ss_pred CCccEEEeeCCCCcccc-----cccc-CCCCcCEEeccCCCCCCC--CCC-CCCCCCCeEeccCCcCcccCCccc-----
Q 023142 19 IKERELDLRGNKIAVIE-----NLGA-TEDQFDTIDLSDNEIVKL--ENM-PHLNRLGTLIINNNRITRINPNIG----- 84 (286)
Q Consensus 19 ~~L~~L~Ls~n~l~~l~-----~~~~-~l~~L~~L~Ls~N~l~~i--~~~-~~l~~L~~L~Ls~N~l~~l~~~~~----- 84 (286)
+.|+.|++++|.|+... ..+. ...+|++|+|++|.|+.. ..+ ..+++|+.|+|++|.|+......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56889999999987432 2222 236899999999988743 222 346688999999998876543222
Q ss_pred cCCCCccEEEeecCcCCCCCC---CccCCCCCCccEEEecCCcCCCCCCch-HHHHhhCCCCcEEeCCCCChHHH
Q 023142 85 EFLPKLHTLVLTNNRLVNLVE---IDPLTSLPKLQFLSLLDNSITKKPNYR-LYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 85 ~~l~~L~~L~Ls~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~~ip~~~-~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
...++|++|+|++|.|+.... ...+..+++|++|+|++|.|+...... ...+..+++|+.|++++|.+.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 246789999999998865221 013466788999999999887432111 11567788899999999987654
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=9.8e-10 Score=100.28 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=84.1
Q ss_pred CCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCc
Q 023142 13 PHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKL 90 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 90 (286)
..|.+|.+|+.+++++|+++.++.....+.+|+.+.|..+ ++.|+ .|.+|++|+.+.+..| ++.++...|.+ .+|
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 4566777777777777777777643333567777777633 66554 5677777777777654 66666666655 567
Q ss_pred cEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC-----CCCCchHHHHhhCCCCcEEeCCC
Q 023142 91 HTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT-----KKPNYRLYVIHKLKSLRVLDFKK 149 (286)
Q Consensus 91 ~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~-----~ip~~~~~~l~~l~~L~~L~l~~ 149 (286)
+.+.+ .+.++.++. ..|.+|++|+.+.+.+|.+. .++.+ +|..|++|+.+.+..
T Consensus 251 ~~i~l-p~~i~~I~~-~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 251 TTVKL-PNGVTNIAS-RAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIPE 309 (401)
T ss_dssp SEEEE-ETTCCEECT-TTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCCT
T ss_pred cEEEe-CCCccEECh-hHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeCC
Confidence 77777 445666665 56777777777777776654 45554 667777777777763
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.99 E-value=1.1e-10 Score=111.05 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=82.9
Q ss_pred CCCCccEEEeeCCCCcc-----ccccccCCCCcCEEeccCCCCCCCC------CCCCCCCCCeEeccCCcCcccCCcccc
Q 023142 17 NAIKERELDLRGNKIAV-----IENLGATEDQFDTIDLSDNEIVKLE------NMPHLNRLGTLIINNNRITRINPNIGE 85 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i~------~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 85 (286)
++++|++|++++|.++. ++.....+++|++|++++|.++.+. .+..+++|+.|++++|.+.+++ ..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence 45667777777776542 2333345667777777777766332 2345677777777777777664 3445
Q ss_pred CCCCccEEEeecCcCC-C-CCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCChHH
Q 023142 86 FLPKLHTLVLTNNRLV-N-LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVKNKE 154 (286)
Q Consensus 86 ~l~~L~~L~Ls~N~i~-~-~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~~~~ 154 (286)
.+++|+.|+++.+... . .+....+..+++|+.|+++++....+|. .+..+++|++|++++|.+..
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~----~~~~~~~L~~L~Ls~~~l~~ 307 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI----LFPFAAQIRKLDLLYALLET 307 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG----GGGGGGGCCEEEETTCCCCH
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH----HHhhcCCCcEEecCCCcCCH
Confidence 6677777777643211 0 1111245667777777777765556665 56778888888888887543
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=1.6e-09 Score=98.91 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=57.9
Q ss_pred CCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 18 AIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 18 l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
+.+|+.+.+.. .++.|+ ..|.++++|+.+++..| ++.++ .|.+ .+|+.+.+ .+.++.++...|.+|++|+.+.
T Consensus 202 ~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 202 YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 45566666653 255554 44555556666665543 34332 3333 44555555 2334445444555555555555
Q ss_pred eecCcCC-----CCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeC
Q 023142 95 LTNNRLV-----NLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDF 147 (286)
Q Consensus 95 Ls~N~i~-----~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l 147 (286)
+.+|.+. .++. ..|.+|++|+.+.+. +.++.|+.+ +|..|++|+.+.+
T Consensus 278 l~~~~~~~~~~~~I~~-~aF~~c~~L~~l~l~-~~i~~I~~~---aF~~c~~L~~l~l 330 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHP-YCLEGCPKLARFEIP-ESIRILGQG---LLGGNRKVTQLTI 330 (401)
T ss_dssp EESSCCCCCTTCEECT-TTTTTCTTCCEECCC-TTCCEECTT---TTTTCCSCCEEEE
T ss_pred eCCccccCCcccEECH-HHhhCCccCCeEEeC-CceEEEhhh---hhcCCCCccEEEE
Confidence 5544433 2333 344455555555554 234444443 4444445554444
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.94 E-value=1.1e-11 Score=118.08 Aligned_cols=208 Identities=16% Similarity=0.060 Sum_probs=121.0
Q ss_pred cCCCCCccEEEeeCCCCcc--ccccccCCCCcCEEeccCCCCCC--CCC-CCCCCCCCeEecc-----------CCcCcc
Q 023142 15 FFNAIKERELDLRGNKIAV--IENLGATEDQFDTIDLSDNEIVK--LEN-MPHLNRLGTLIIN-----------NNRITR 78 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--i~~-~~~l~~L~~L~Ls-----------~N~l~~ 78 (286)
+..+++|++|++++|.++. ++..+..+++|++|+++ +.+.. ++. +..+++|++|+++ .|.++.
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 4567889999999998762 33445678888888888 44432 222 3557778888888 355654
Q ss_pred cC-CccccCCCCccEEEeecCcCCCCCCCccCCC-CCCccEEEec----CCcCCCCCCc--hHHHHhhCCCCcEEeCCCC
Q 023142 79 IN-PNIGEFLPKLHTLVLTNNRLVNLVEIDPLTS-LPKLQFLSLL----DNSITKKPNY--RLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 79 l~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~-l~~L~~L~L~----~N~l~~ip~~--~~~~l~~l~~L~~L~l~~n 150 (286)
.. ...+..+++|++|+++.|.++.... ..+.. +++|+.|+++ .|.++..|.. ....+..+++|++|+++.+
T Consensus 368 ~~~~~l~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 368 RGLIALAQGCQELEYMAVYVSDITNESL-ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHCTTCSEEEEEESCCCHHHH-HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHhhCccCeEEEeecCCccHHHH-HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 21 1223457788888887777765322 23333 7778888875 5666654432 1114566777777777543
Q ss_pred C--hHHHHHHHHHhhcchhHHHHHhhhcccCCCCCCCC--CChh-hhccCCccCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 023142 151 K--NKERMEAASLFASEEMEEEAKKESMKTLMPVEVPN--VSEE-EEQQTPKVVAPTPEQII--AIKAAIVNSQTLEEVA 223 (286)
Q Consensus 151 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~l~~l~ls~n~l~--~ip~~i~~~~~L~~l~ 223 (286)
. +..... ........ .+....+....+.+ ++.. ..+.+|+.+++++|.++ .++..+..+++|++|+
T Consensus 447 ~~~l~~~~~-~~~~~~~~------~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 447 QGGLTDLGL-SYIGQYSP------NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp GGGCCHHHH-HHHHHSCT------TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred CCCccHHHH-HHHHHhCc------cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 2 221110 00111000 01111111101110 0011 24568999999999876 4666678899999999
Q ss_pred HHHHHHhc
Q 023142 224 RLEKVLKS 231 (286)
Q Consensus 224 l~~N~l~~ 231 (286)
+++|.++.
T Consensus 520 ls~n~it~ 527 (592)
T 3ogk_B 520 VQGYRASM 527 (592)
T ss_dssp EESCBCCT
T ss_pred CcCCcCCH
Confidence 99999853
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.88 E-value=2.3e-12 Score=122.68 Aligned_cols=212 Identities=10% Similarity=0.075 Sum_probs=121.6
Q ss_pred cCCCCCccEEEeeCCC-Cccc---------------cccccCCCCcCEEeccCCCCCCC--CCCC-CCCCCCeEeccCC-
Q 023142 15 FFNAIKERELDLRGNK-IAVI---------------ENLGATEDQFDTIDLSDNEIVKL--ENMP-HLNRLGTLIINNN- 74 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~-l~~l---------------~~~~~~l~~L~~L~Ls~N~l~~i--~~~~-~l~~L~~L~Ls~N- 74 (286)
+..+++|+.|+++++. +..+ +.....+++|++|+|++|.++.. ..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3456788899998875 2222 12234578899999998887643 2343 5788999999888
Q ss_pred cCccc-CCccccCCCCccEEEeecCcCCCCCC--C-ccCCCCCCccEEEecCCcCCCCCCchHH-HHhhCCCCcEEeCCC
Q 023142 75 RITRI-NPNIGEFLPKLHTLVLTNNRLVNLVE--I-DPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVLDFKK 149 (286)
Q Consensus 75 ~l~~l-~~~~~~~l~~L~~L~Ls~N~i~~~~~--~-~~l~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L~l~~ 149 (286)
.++.. .+..+..+++|++|++++|.++.... + .....+++|+.|++++|. ..+....+. .+..+++|++|++++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 55542 12334578889999999888776432 0 123367789999998887 333322221 345678888888888
Q ss_pred C-ChHHHHHHHHHhhcchhHH------------------HHHhhh---cc-cCCCCCCCCCChh-hhccCCccCCCCHHH
Q 023142 150 V-KNKERMEAASLFASEEMEE------------------EAKKES---MK-TLMPVEVPNVSEE-EEQQTPKVVAPTPEQ 205 (286)
Q Consensus 150 n-~~~~~~~~~~~~~~~~~~~------------------~~~~~~---~~-~~~~~~~~~~~~~-~~~~~l~~l~ls~n~ 205 (286)
| .+..++............. ...... .. .+.......++.. ..+.+|+.++++.|.
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence 7 4444332222111111000 000000 00 0100000111122 256788888888887
Q ss_pred HH--HHHHHHHhcCCHHHHHHHHH
Q 023142 206 II--AIKAAIVNSQTLEEVARLEK 227 (286)
Q Consensus 206 l~--~ip~~i~~~~~L~~l~l~~N 227 (286)
++ .++..+..+++|++|++.+|
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 65 34445667888887777665
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.88 E-value=6.2e-10 Score=105.78 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=89.9
Q ss_pred cEEEeeCCCCccccccccCCCCcCEEeccCCCC-CCC---C-C------------CCCCCCCCeEeccCCcCcccCCccc
Q 023142 22 RELDLRGNKIAVIENLGATEDQFDTIDLSDNEI-VKL---E-N------------MPHLNRLGTLIINNNRITRINPNIG 84 (286)
Q Consensus 22 ~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i---~-~------------~~~l~~L~~L~Ls~N~l~~l~~~~~ 84 (286)
+.++++.+........+..+++|+.|+++++.. ..+ | . +..+++|++|+|++|.+++.....+
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 356666654444445666789999999999862 222 1 1 1357899999999999887544333
Q ss_pred -cCCCCccEEEeecC-cCCC--CCCCccCCCCCCccEEEecCCcCCCCCCchHH-HHhhCCCCcEEeCCCCC
Q 023142 85 -EFLPKLHTLVLTNN-RLVN--LVEIDPLTSLPKLQFLSLLDNSITKKPNYRLY-VIHKLKSLRVLDFKKVK 151 (286)
Q Consensus 85 -~~l~~L~~L~Ls~N-~i~~--~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~-~l~~l~~L~~L~l~~n~ 151 (286)
..+++|++|++++| .++. ++. .+.++++|++|++++|.++......+. ....+++|+.|++++|.
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAA--IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHH--HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHH--HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 36899999999999 5554 332 344799999999999997754321110 23477899999999986
No 147
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.76 E-value=4.9e-09 Score=90.22 Aligned_cols=103 Identities=28% Similarity=0.321 Sum_probs=77.7
Q ss_pred EeccCCCCCCCCC-----CCCCCCCCeEeccCCcCcccCC--ccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEE
Q 023142 47 IDLSDNEIVKLEN-----MPHLNRLGTLIINNNRITRINP--NIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLS 119 (286)
Q Consensus 47 L~Ls~N~l~~i~~-----~~~l~~L~~L~Ls~N~l~~l~~--~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~ 119 (286)
++++.|....++. ...+++|+.|+|++|+|++++. ..+..+++|+.|+|++|.|+++..+..+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 4555664443321 2457899999999999998753 4556889999999999999988655556655 899999
Q ss_pred ecCCcCCC-CC---CchHHHHhhCCCCcEEeCCCC
Q 023142 120 LLDNSITK-KP---NYRLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 120 L~~N~l~~-ip---~~~~~~l~~l~~L~~L~l~~n 150 (286)
|++|+++. +| .++...+..+|+|+.||....
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 99999984 44 455567899999999997654
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=1.5e-08 Score=82.38 Aligned_cols=121 Identities=12% Similarity=0.147 Sum_probs=87.8
Q ss_pred cccccCCCCcCEEeccCC-CCCCC------CCCCCCCCCCeEeccCCcCcccCC----ccccCCCCccEEEeecCcCCCC
Q 023142 35 ENLGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNL 103 (286)
Q Consensus 35 ~~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~ 103 (286)
...+...++|++|+|++| .|..- ..+...++|++|+|++|+|..... ..+...++|++|+|++|.|...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556788999999998 88742 245677899999999999876321 2234567899999999998762
Q ss_pred CC---CccCCCCCCccEEEe--cCCcCCCCCCc-hHHHHhhCCCCcEEeCCCCChHHH
Q 023142 104 VE---IDPLTSLPKLQFLSL--LDNSITKKPNY-RLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 104 ~~---~~~l~~l~~L~~L~L--~~N~l~~ip~~-~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
.. ...+...+.|++|+| ++|.|...... ....+...++|++|++++|.+...
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 10 125677889999999 88999843211 112677889999999999998754
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=2.6e-08 Score=89.62 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=78.4
Q ss_pred CCCCCccEEEeeCCCCc----------cccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccc-
Q 023142 16 FNAIKERELDLRGNKIA----------VIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIG- 84 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~----------~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~- 84 (286)
..+++|+.|.+..+... .+...+..+++|+.|.|++|.-..++.+. +++|+.|.+..+.+..-....+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence 34567788877654321 23344556778888888777322344443 7788888888777654221111
Q ss_pred -cCCCCccEEEeec--CcC------CCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHh---hCCCCcEEeCCCCCh
Q 023142 85 -EFLPKLHTLVLTN--NRL------VNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIH---KLKSLRVLDFKKVKN 152 (286)
Q Consensus 85 -~~l~~L~~L~Ls~--N~i------~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~---~l~~L~~L~l~~n~~ 152 (286)
..+|+|+.|+|+. |.. ..+.++-....+++|++|+|.+|.+...... .+. .+++|++|+++.|.+
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~---~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE---MFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH---HHHHCSSGGGCSEEECCSSCC
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH---HHHhCccCCCCCEEECCCCCC
Confidence 2577888888753 221 1111100112477888888888777631111 222 467788888888876
Q ss_pred HHH
Q 023142 153 KER 155 (286)
Q Consensus 153 ~~~ 155 (286)
.+.
T Consensus 292 ~d~ 294 (362)
T 2ra8_A 292 TDE 294 (362)
T ss_dssp BHH
T ss_pred ChH
Confidence 543
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=7e-09 Score=84.37 Aligned_cols=112 Identities=18% Similarity=0.065 Sum_probs=86.1
Q ss_pred cCCCCCccEEEeeCC-CCcc-----ccccccCCCCcCEEeccCCCCCCC------CCCCCCCCCCeEeccCCcCcccC--
Q 023142 15 FFNAIKERELDLRGN-KIAV-----IENLGATEDQFDTIDLSDNEIVKL------ENMPHLNRLGTLIINNNRITRIN-- 80 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n-~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~l~~L~~L~Ls~N~l~~l~-- 80 (286)
+...+.|++|+|++| .|+. +...+...++|++|+|++|.|..- ..+...+.|++|+|++|.|+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456788999999999 9873 445566678999999999999842 13566789999999999998732
Q ss_pred --CccccCCCCccEEEe--ecCcCCCCCC---CccCCCCCCccEEEecCCcCC
Q 023142 81 --PNIGEFLPKLHTLVL--TNNRLVNLVE---IDPLTSLPKLQFLSLLDNSIT 126 (286)
Q Consensus 81 --~~~~~~l~~L~~L~L--s~N~i~~~~~---~~~l~~l~~L~~L~L~~N~l~ 126 (286)
...+...++|++|+| ++|.|..... ...+...++|++|+|++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 233456788999999 8899875321 024556789999999999876
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.44 E-value=1.1e-06 Score=79.00 Aligned_cols=130 Identities=14% Similarity=0.194 Sum_probs=97.4
Q ss_pred CCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 13 PHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 13 ~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
..+..+.+|+.+.+..+ ++.+. ..+..+..|+.+.+..+ ++.++ .|.++.+|+.+.+.. .+..++...|.+|++
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 34555667777776544 44444 45566788888888765 66664 678888888888864 477788888888889
Q ss_pred ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n 150 (286)
|+.+.+.++.++.++. ..|.+|.+|+.+.|..+ ++.|..+ +|..|.+|+.+.+..+
T Consensus 288 L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 288 LTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCTT
T ss_pred cccccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECCc
Confidence 9999888888888877 78888889999888754 7777776 7888888888887554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=3.3e-08 Score=88.91 Aligned_cols=138 Identities=16% Similarity=0.245 Sum_probs=92.9
Q ss_pred CCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCC--CCC--CCCCCCCeEeccC--Cc------CcccCCcc
Q 023142 16 FNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKL--ENM--PHLNRLGTLIINN--NR------ITRINPNI 83 (286)
Q Consensus 16 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~--~~l~~L~~L~Ls~--N~------l~~l~~~~ 83 (286)
..+++|+.|++++|.--.++. +. +++|+.|+|..+.+..- ..+ ..+++|+.|+|+. |. +..+.+..
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 456899999999984224554 33 88999999999887632 223 3789999999864 22 22221111
Q ss_pred c-cCCCCccEEEeecCcCCCCCC--CccCCCCCCccEEEecCCcCCCCCCchH-HHHhhCCCCcEEeCCCCChHHH
Q 023142 84 G-EFLPKLHTLVLTNNRLVNLVE--IDPLTSLPKLQFLSLLDNSITKKPNYRL-YVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 84 ~-~~l~~L~~L~Ls~N~i~~~~~--~~~l~~l~~L~~L~L~~N~l~~ip~~~~-~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
. ..+++|++|++++|.+..... +.....+++|++|+|+.|.+.......+ ..+..+++|+.|+++.|.+.+.
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 1 257999999999998864211 1112357899999999999885211110 0346789999999999987643
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.42 E-value=6.5e-07 Score=81.04 Aligned_cols=108 Identities=12% Similarity=0.251 Sum_probs=78.1
Q ss_pred ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCC
Q 023142 36 NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLP 113 (286)
Q Consensus 36 ~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~ 113 (286)
..|..+..|+.+.+..+. ..++ .|.+++.|+.+.+. +.++.++...|.+|.+|+.+.+..+ ++.+.. ..|.+|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCT
T ss_pred ceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCC
Confidence 456667778888776543 3343 57778888888875 5577777788888888888888653 666666 6788888
Q ss_pred CccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCCC
Q 023142 114 KLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKVK 151 (286)
Q Consensus 114 ~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n~ 151 (286)
+|+.+.+..+ ++.|..+ +|..|.+|+.+++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCce
Confidence 8888888644 7777665 67888888888887764
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.42 E-value=7.7e-07 Score=79.95 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=102.1
Q ss_pred CCCcCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCC
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLP 88 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 88 (286)
...|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ ++.++ .|.++.+|+.+.+.++.++.++...|.+|.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 345788999999999876 77776 56777899999999654 67665 689999999999999999999999999999
Q ss_pred CccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCC
Q 023142 89 KLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSL 142 (286)
Q Consensus 89 ~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L 142 (286)
+|+.+.+..+ ++.+.. .+|.+|.+|+.+.+..+ ++.|..+ +|..+..+
T Consensus 311 ~L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~~-v~~I~~~---aF~~c~~~ 358 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQV-YAFKNCKALSTISYPKS-ITLIESG---AFEGSSIT 358 (379)
T ss_dssp TCCEEECCTT-CCEECT-TTTTTCTTCCCCCCCTT-CCEECTT---TTTTSSCC
T ss_pred CCCEEEcCcc-ccEEHH-HHhhCCCCCCEEEECCc-cCEEchh---HhhCCCCC
Confidence 9999999754 888877 78999999999999765 7777765 66666544
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.36 E-value=1.9e-07 Score=80.24 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=75.3
Q ss_pred cCCCCCccE--EEeeCCCCccccccc----cCCCCcCEEeccCCCCCCCCCC----CCCCCCCeEeccCCcCcccCC-cc
Q 023142 15 FFNAIKERE--LDLRGNKIAVIENLG----ATEDQFDTIDLSDNEIVKLENM----PHLNRLGTLIINNNRITRINP-NI 83 (286)
Q Consensus 15 ~~~l~~L~~--L~Ls~n~l~~l~~~~----~~l~~L~~L~Ls~N~l~~i~~~----~~l~~L~~L~Ls~N~l~~l~~-~~ 83 (286)
|...+.|.. ++++.|....++..+ ..+++|+.|+|++|.|+.++.+ ..+++|+.|+|++|+|+++.. ..
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~ 216 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK 216 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence 444455665 778888766555322 4588999999999999987643 479999999999999998732 22
Q ss_pred ccCCCCccEEEeecCcCCC-CCCC-----ccCCCCCCccEEE
Q 023142 84 GEFLPKLHTLVLTNNRLVN-LVEI-----DPLTSLPKLQFLS 119 (286)
Q Consensus 84 ~~~l~~L~~L~Ls~N~i~~-~~~~-----~~l~~l~~L~~L~ 119 (286)
+..+ +|++|+|++|.+.. ++.. ..+..+++|+.||
T Consensus 217 l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 217 IKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 2333 89999999999875 3310 1366789998886
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.30 E-value=1.9e-06 Score=77.95 Aligned_cols=128 Identities=10% Similarity=0.109 Sum_probs=84.8
Q ss_pred cCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCCCCCCCCCCCeEeccCCcCcccCCccccCCCCccEEE
Q 023142 15 FFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLENMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLV 94 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 94 (286)
|.++..|+.+.+..+...--...+..+..++.+.+..+.+.. ..|..+.+|+.+.+..+ ++.++...|.+|.+|+.++
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSID 326 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEEC
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeecc-ccccccccccccccccc-cceechhhhcCCCCCCEEE
Confidence 444444555554444322222334445555555444332111 14677888888888654 7788888888888899888
Q ss_pred eecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEEeCCCC
Q 023142 95 LTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVLDFKKV 150 (286)
Q Consensus 95 Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L~l~~n 150 (286)
+.. .++.+.. ..|.+|.+|+.+.+..+ ++.|+.. +|..|.+|+.+++..+
T Consensus 327 lp~-~v~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 327 LPY-LVEEIGK-RSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINLKKVELPKR 376 (394)
T ss_dssp CCT-TCCEECT-TTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTCCEEEEEGG
T ss_pred eCC-cccEEhH-HhccCCCCCCEEEECcc-ccEehHH---HhhCCCCCCEEEECCC
Confidence 864 4777776 68888999999988766 7777766 7888888988888654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.20 E-value=1.1e-05 Score=72.90 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=46.3
Q ss_pred cCCCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCcc
Q 023142 15 FFNAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLH 91 (286)
Q Consensus 15 ~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 91 (286)
|.++..|+.+.+..+.. .+. ..+.++..|+.+.+. +.++.++ .|.+|.+|+.+.+..+ ++.+....|.+|.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 44444444444433322 222 333444445555443 2334443 3444555555555432 4444444444555555
Q ss_pred EEEeecCcCCCCCCCccCCCCCCccEEEecCC
Q 023142 92 TLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDN 123 (286)
Q Consensus 92 ~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N 123 (286)
.+.+..+ ++.+.. ..|.+|++|+.+.+.++
T Consensus 338 ~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS-VTKIPE-SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT-CCBCCG-GGGTTCTTCCEEEESSC
T ss_pred EEEECcc-cCEEhH-hHhhCCCCCCEEEECCc
Confidence 5555322 444443 44555555555555443
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=3.5e-06 Score=76.19 Aligned_cols=123 Identities=9% Similarity=0.073 Sum_probs=97.9
Q ss_pred CCCcCCCCCccEEEeeCCCCccccccccCCCCcCEEeccCCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCC
Q 023142 12 SPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPK 89 (286)
Q Consensus 12 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 89 (286)
...|.++..++.+.+..+.+. ...+..+.+|+.+.+..+ ++.|+ .|.++.+|+.+.+..+ ++.++...|.+|.+
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred ccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 445778888888887765432 245667899999999765 77775 6899999999999754 89999999999999
Q ss_pred ccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCCCCCCchHHHHhhCCCCcEE
Q 023142 90 LHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSITKKPNYRLYVIHKLKSLRVL 145 (286)
Q Consensus 90 L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~ip~~~~~~l~~l~~L~~L 145 (286)
|+.+.+..+ ++.+.. .+|.+|++|+.+.+..+ +..+.. .|..+++|+.+
T Consensus 345 L~~i~lp~~-l~~I~~-~aF~~C~~L~~i~lp~~-~~~~~~----~F~~c~~L~~I 393 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGA-NAFQGCINLKKVELPKR-LEQYRY----DFEDTTKFKWI 393 (394)
T ss_dssp CCEECCCTT-CCEECT-TTBTTCTTCCEEEEEGG-GGGGGG----GBCTTCEEEEE
T ss_pred CCEEEECcc-ccEehH-HHhhCCCCCCEEEECCC-CEEhhh----eecCCCCCcEE
Confidence 999999876 888887 79999999999999764 444432 67888888764
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=7.3e-07 Score=71.62 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=46.6
Q ss_pred CCcCEEeccCCCCCCC--CCCCCCCCCCeEeccCC-cCcccCCccccC----CCCccEEEeecCc-CCCCCCCccCCCCC
Q 023142 42 DQFDTIDLSDNEIVKL--ENMPHLNRLGTLIINNN-RITRINPNIGEF----LPKLHTLVLTNNR-LVNLVEIDPLTSLP 113 (286)
Q Consensus 42 ~~L~~L~Ls~N~l~~i--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~----l~~L~~L~Ls~N~-i~~~~~~~~l~~l~ 113 (286)
..|+.||++++.|+.. ..+..+++|+.|+|++| +|++-.-..+.. +++|++|++++|. |+.-. +..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence 3567777777766633 34566777777777776 355432122222 2356777777663 55422 23455666
Q ss_pred CccEEEecCCc
Q 023142 114 KLQFLSLLDNS 124 (286)
Q Consensus 114 ~L~~L~L~~N~ 124 (286)
+|++|++++++
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=6.3e-06 Score=66.14 Aligned_cols=86 Identities=16% Similarity=0.125 Sum_probs=65.1
Q ss_pred CCCCccEEEeeCCCCcccc-ccccCCCCcCEEeccCCC-CCCC--CCCCCC----CCCCeEeccCC-cCcccCCccccCC
Q 023142 17 NAIKERELDLRGNKIAVIE-NLGATEDQFDTIDLSDNE-IVKL--ENMPHL----NRLGTLIINNN-RITRINPNIGEFL 87 (286)
Q Consensus 17 ~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~-l~~i--~~~~~l----~~L~~L~Ls~N-~l~~l~~~~~~~l 87 (286)
.-.+|+.|+++++.|+..- ..+..+++|+.|+|++|. |++- ..+..+ ++|+.|+|++| +|++-.-..+..+
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4457999999999988432 334679999999999995 6642 344443 58999999998 5887443445678
Q ss_pred CCccEEEeecCc-CCC
Q 023142 88 PKLHTLVLTNNR-LVN 102 (286)
Q Consensus 88 ~~L~~L~Ls~N~-i~~ 102 (286)
++|++|+++++. |+.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 999999999984 554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.63 E-value=7.3e-05 Score=56.89 Aligned_cols=55 Identities=25% Similarity=0.245 Sum_probs=34.8
Q ss_pred eEeccCCcCc--ccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecCCcCC
Q 023142 68 TLIINNNRIT--RINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLDNSIT 126 (286)
Q Consensus 68 ~L~Ls~N~l~--~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 126 (286)
.++.+++.++ .+|..+. ++|+.|+|++|+|+.++. ..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 5566666666 5654321 356667777777777665 56666677777777777765
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.60 E-value=0.0001 Score=55.99 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=34.5
Q ss_pred EEeccCCCCC--CCC-CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecCcCC
Q 023142 46 TIDLSDNEIV--KLE-NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNNRLV 101 (286)
Q Consensus 46 ~L~Ls~N~l~--~i~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~i~ 101 (286)
.++.+++.++ .+| .+. ++|+.|+|++|+|+.+++..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5556666665 555 222 35666777777777777766767777777777777654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00053 Score=55.86 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=81.7
Q ss_pred ccccCCCCcCEEeccCC-CCCCC------CCCCCCCCCCeEeccCCcCcccCC----ccccCCCCccEEEeecCcCCCCC
Q 023142 36 NLGATEDQFDTIDLSDN-EIVKL------ENMPHLNRLGTLIINNNRITRINP----NIGEFLPKLHTLVLTNNRLVNLV 104 (286)
Q Consensus 36 ~~~~~l~~L~~L~Ls~N-~l~~i------~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~~l~~L~~L~Ls~N~i~~~~ 104 (286)
..+..-+.|+.|+|++| .|..- ..+...+.|+.|+|++|+|.+... ..+..-+.|++|+|++|.|..-.
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33445678999999885 77632 245677899999999999986432 22234568999999999987522
Q ss_pred C---CccCCCCCCccEEEecCCcCCCCCC----chHHHHhhCCCCcEEeCCCCChHHH
Q 023142 105 E---IDPLTSLPKLQFLSLLDNSITKKPN----YRLYVIHKLKSLRVLDFKKVKNKER 155 (286)
Q Consensus 105 ~---~~~l~~l~~L~~L~L~~N~l~~ip~----~~~~~l~~l~~L~~L~l~~n~~~~~ 155 (286)
. ...+..-+.|+.|+|++|....+.. ....++..-+.|..|+++.|.+...
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~~ 172 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEAR 172 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHHH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccHH
Confidence 1 1235556779999998764322221 1112678889999999999987644
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.00014 Score=59.33 Aligned_cols=109 Identities=11% Similarity=0.112 Sum_probs=76.9
Q ss_pred CCCCccEEEeeCC-CCcc-----ccccccCCCCcCEEeccCCCCCCC--C----CCCCCCCCCeEeccCCcCcccCC---
Q 023142 17 NAIKERELDLRGN-KIAV-----IENLGATEDQFDTIDLSDNEIVKL--E----NMPHLNRLGTLIINNNRITRINP--- 81 (286)
Q Consensus 17 ~l~~L~~L~Ls~n-~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~i--~----~~~~l~~L~~L~Ls~N~l~~l~~--- 81 (286)
+-+.|+.|+|++| +|.. +-..+..-..|+.|+|++|.|..- . .+...+.|++|+|++|+|+.-..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4568999999986 8862 444555677899999999999853 2 34567899999999999986432
Q ss_pred -ccccCCCCccEEEeecCcCCCCCC------CccCCCCCCccEEEecCCcC
Q 023142 82 -NIGEFLPKLHTLVLTNNRLVNLVE------IDPLTSLPKLQFLSLLDNSI 125 (286)
Q Consensus 82 -~~~~~l~~L~~L~Ls~N~i~~~~~------~~~l~~l~~L~~L~L~~N~l 125 (286)
..+..-+.|++|+|++|....+.. ...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 223344679999998764322221 01344567899999987654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.21 E-value=0.66 Score=32.96 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=28.6
Q ss_pred cCcccCCccccCCCCccEEEeecCcCCCCCCCccCCCCCCccEEEecC
Q 023142 75 RITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLTSLPKLQFLSLLD 122 (286)
Q Consensus 75 ~l~~l~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~l~~l~~L~~L~L~~ 122 (286)
.++.|....|.+|.+|+.+.+-.+ ++.+.. ..|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcC
Confidence 455666666666666666666543 555554 5666677777666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.34 E-value=2.8 Score=29.56 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=37.7
Q ss_pred CCCCCCCC--CCCCCCCCCeEeccCCcCcccCCccccCCCCccEEEeecC
Q 023142 51 DNEIVKLE--NMPHLNRLGTLIINNNRITRINPNIGEFLPKLHTLVLTNN 98 (286)
Q Consensus 51 ~N~l~~i~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 98 (286)
+..++.|. .|.+|.+|+.+.+..+ ++.|....|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34566674 6888999999988865 78888888889999999998765
Done!