Your job contains 1 sequence.
>023143
MAHPPYDPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKP
GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKK
RKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATD
SGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG
MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMRKL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023143
(286 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091526 - symbol:AT3G13700 species:3702 "Arabi... 624 5.5e-61 1
TAIR|locus:2060015 - symbol:AT2G42240 species:3702 "Arabi... 373 2.2e-34 1
WB|WBGene00003172 - symbol:mec-8 species:6239 "Caenorhabd... 191 6.6e-32 2
UNIPROTKB|G5ECJ4 - symbol:mec-8 "Protein MEC-8" species:6... 191 6.6e-32 2
TAIR|locus:504955737 - symbol:AT3G21215 species:3702 "Ara... 175 1.7e-26 2
FB|FBgn0263995 - symbol:cpo "couch potato" species:7227 "... 168 2.1e-15 2
UNIPROTKB|Q9YGP5 - symbol:rbpms "RNA-binding protein with... 177 1.3e-13 1
ZFIN|ZDB-GENE-040426-741 - symbol:rbpms2b "RNA binding pr... 176 1.6e-13 1
ZFIN|ZDB-GENE-040718-106 - symbol:rbpms2a "RNA binding pr... 176 1.6e-13 1
UNIPROTKB|F1NZ89 - symbol:RBPMS2 "Uncharacterized protein... 172 4.4e-13 1
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 172 4.4e-13 1
UNIPROTKB|Q9W6I1 - symbol:RBPMS "RNA-binding protein with... 172 4.4e-13 1
UNIPROTKB|F1MAV3 - symbol:RBPMS "Uncharacterized protein"... 171 5.6e-13 1
UNIPROTKB|E2R5F7 - symbol:RBPMS "Uncharacterized protein"... 171 5.6e-13 1
UNIPROTKB|B4E3T4 - symbol:RBPMS "HCG2043421, isoform CRA_... 171 5.6e-13 1
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 171 5.6e-13 1
UNIPROTKB|Q93062 - symbol:RBPMS "RNA-binding protein with... 171 5.6e-13 1
UNIPROTKB|F1RX64 - symbol:RBPMS "Uncharacterized protein"... 171 5.6e-13 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 171 5.6e-13 1
UNIPROTKB|F1N2U8 - symbol:RBPMS2 "Uncharacterized protein... 169 9.1e-13 1
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 169 9.1e-13 1
UNIPROTKB|Q6ZRY4 - symbol:RBPMS2 "RNA-binding protein wit... 169 9.1e-13 1
UNIPROTKB|F1S0B2 - symbol:RBPMS2 "Uncharacterized protein... 169 9.1e-13 1
MGI|MGI:1919223 - symbol:Rbpms2 "RNA binding protein with... 169 9.1e-13 1
RGD|1561222 - symbol:Rbpms2 "RNA binding protein with mul... 169 9.1e-13 1
UNIPROTKB|F1NAP9 - symbol:RBPMS "RNA-binding protein with... 166 1.9e-12 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 166 1.9e-12 1
UNIPROTKB|F1M7J8 - symbol:Rbpms "Protein Rbpms" species:1... 166 1.9e-12 1
UNIPROTKB|F1M9Y9 - symbol:Rbpms "Protein Rbpms" species:1... 166 1.9e-12 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 158 1.8e-11 1
POMBASE|SPCC320.07c - symbol:mde7 "RNA-binding protein Md... 139 7.2e-10 2
POMBASE|SPCC16C4.07 - symbol:scw1 "RNA-binding protein Sc... 157 8.3e-09 1
UNIPROTKB|G5EH29 - symbol:MGCH7_ch7g848 "RNA binding prot... 148 1.1e-07 1
SGD|S000002383 - symbol:WHI4 "Putative RNA binding protei... 135 3.9e-06 1
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 99 9.4e-06 2
ASPGD|ASPL0000063387 - symbol:AN7700 species:162425 "Emer... 127 3.1e-05 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 121 6.0e-05 1
CGD|CAL0002334 - symbol:WHI3 species:5476 "Candida albica... 100 7.6e-05 3
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 117 8.1e-05 1
SGD|S000005141 - symbol:WHI3 "RNA binding protein that se... 118 0.00023 2
DICTYBASE|DDB_G0288391 - symbol:snrpB2 "U2 small nuclear ... 112 0.00029 1
UNIPROTKB|Q9Y4C8 - symbol:RBM19 "Probable RNA-binding pro... 99 0.00073 2
>TAIR|locus:2091526 [details] [associations]
symbol:AT3G13700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001307 UniGene:At.39361
OMA:APSANGH IPI:IPI00523019 RefSeq:NP_187983.1
ProteinModelPortal:B3H4P0 SMR:B3H4P0 PRIDE:B3H4P0
EnsemblPlants:AT3G13700.1 GeneID:820579 KEGG:ath:AT3G13700
TAIR:At3g13700 eggNOG:NOG298185 HOGENOM:HOG000242657
PhylomeDB:B3H4P0 ProtClustDB:CLSN2684800 ArrayExpress:B3H4P0
Genevestigator:B3H4P0 Uniprot:B3H4P0
Length = 296
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 129/204 (63%), Positives = 152/204 (74%)
Query: 76 VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRT 135
VVAFATF +H+ A+AA++ELNGVKFDPQ+GS LHIELARSNSR+K +PGSG YVVID R
Sbjct: 95 VVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVIDNRN 154
Query: 136 KTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKP 195
K + Q+ S +GDSD DE N DS + D TT+SE ++ + N EK
Sbjct: 155 KEISKSQDDQSDEGDSDPDEVQEPGNSDSPKEND--TTKSEADSEPDSKAPSANGHLEKA 212
Query: 196 YEGG--VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQ 253
EGG + CSTLFIANLGPNCTEDELKQ LS YPGF++LK+RARGGMPVAFADFEE+EQ
Sbjct: 213 SEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQ 272
Query: 254 ASIAMEGLQDSTLPSSDRGGMHIE 277
A+ AM LQ + L SSDRGGMHIE
Sbjct: 273 ATDAMNHLQGNLLSSSDRGGMHIE 296
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 65/188 (34%), Positives = 94/188 (50%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVN--H 85
+ INTLFVSGLP+DV+AREIHNLFRR+ GF+ CQLKYTGRG+QV + F F
Sbjct: 32 EPGAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGDQVCKNLQFLFFFIPIF 91
Query: 86 QTAVAALHELNGVKFDPQSGSVLH-----------IELARSNSRKKRKPGSGAYVVIDKR 134
+ AV A +F + + L+ + + + S +RK G+ +
Sbjct: 92 RKAVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYV--- 148
Query: 135 TKTEANVQESSSADGDSDTDEASP--VRNIDSADKG-DFVTTQSERATDSGNAVAPINEQ 191
N + S S D SD ++ P V+ ++D + TT+SE ++ + N
Sbjct: 149 VIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSANGH 208
Query: 192 SEKPYEGG 199
EK EGG
Sbjct: 209 LEKASEGG 216
>TAIR|locus:2060015 [details] [associations]
symbol:AT2G42240 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242657 UniGene:At.73056 EMBL:AK228665
IPI:IPI00570582 RefSeq:NP_001078040.1 ProteinModelPortal:Q0WQM7
SMR:Q0WQM7 EnsemblPlants:AT2G42240.2 GeneID:818824
KEGG:ath:AT2G42240 TAIR:At2g42240 OMA:CPTLFVA PhylomeDB:Q0WQM7
ProtClustDB:CLSN2699079 Genevestigator:Q0WQM7 Uniprot:Q0WQM7
Length = 302
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 96/245 (39%), Positives = 135/245 (55%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFV+GLP+DV+ REI+NLFR PG++ L+ + G + AFA F + Q+AVA +H
Sbjct: 49 VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SSDGAKPFAFAVFSDLQSAVAVMHA 107
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTD 154
LNG+ FD + S LHI+LA+SN + KR + + K+ K+ ES +
Sbjct: 108 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL-KKLKSWNTTTESGFGSFQTPGM 166
Query: 155 EASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPN 214
+S I + QS+ + AP S KP + PC TLFIAN+GPN
Sbjct: 167 SSSAYNTIG------YSPAQSQGIANVAGR-APT---SRKPSKAA-DPCPTLFIANMGPN 215
Query: 215 CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG- 273
CTE EL Q S GF LK++ G PVAF DF++V +S A+ LQ + L SS G
Sbjct: 216 CTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEV 275
Query: 274 MHIEY 278
+ ++Y
Sbjct: 276 LRLQY 280
>WB|WBGene00003172 [details] [associations]
symbol:mec-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0048644
"muscle organ morphogenesis" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031581 "hemidesmosome assembly"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002119 GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638
HSSP:P09012 GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084
PIR:T19360 RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 191 (72.3 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 37/100 (37%), Positives = 59/100 (59%)
Query: 184 AVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPV 243
A A + S++ + CSTLF+ANL ED L+ + GF L++ + G V
Sbjct: 208 AAAASLQHSQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCV 267
Query: 244 AFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283
AF ++ ++++A+ AM LQ + ++DRGG+ IEYAR+KM
Sbjct: 268 AFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYARNKM 307
Score = 178 (67.7 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT---GRGNQVVAFATFVNHQTAVAA 91
+ TLFVSGLP D + RE++ LFR G++ LK T G+ V F TF++ Q A A
Sbjct: 30 VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDA 89
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSRKKR 121
L GV+FDP+ VL +ELA+SN++ R
Sbjct: 90 RKMLQGVRFDPECAQVLRLELAKSNTKVAR 119
>UNIPROTKB|G5ECJ4 [details] [associations]
symbol:mec-8 "Protein MEC-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002119
GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638 HSSP:P09012
GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084 PIR:T19360
RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 191 (72.3 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 37/100 (37%), Positives = 59/100 (59%)
Query: 184 AVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPV 243
A A + S++ + CSTLF+ANL ED L+ + GF L++ + G V
Sbjct: 208 AAAASLQHSQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCV 267
Query: 244 AFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283
AF ++ ++++A+ AM LQ + ++DRGG+ IEYAR+KM
Sbjct: 268 AFVEYSDLQKATQAMISLQGFQITANDRGGLRIEYARNKM 307
Score = 178 (67.7 bits), Expect = 6.6e-32, Sum P(2) = 6.6e-32
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT---GRGNQVVAFATFVNHQTAVAA 91
+ TLFVSGLP D + RE++ LFR G++ LK T G+ V F TF++ Q A A
Sbjct: 30 VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDA 89
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSRKKR 121
L GV+FDP+ VL +ELA+SN++ R
Sbjct: 90 RKMLQGVRFDPECAQVLRLELAKSNTKVAR 119
>TAIR|locus:504955737 [details] [associations]
symbol:AT3G21215 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09012 eggNOG:NOG255497
HOGENOM:HOG000242657 EMBL:AF361632 EMBL:AY143892 EMBL:AK118175
EMBL:AK226266 EMBL:AK317062 IPI:IPI00534607 RefSeq:NP_683582.2
UniGene:At.27825 ProteinModelPortal:Q9ASW4 SMR:Q9ASW4 IntAct:Q9ASW4
PaxDb:Q9ASW4 PRIDE:Q9ASW4 EnsemblPlants:AT3G21215.1 GeneID:821675
KEGG:ath:AT3G21215 TAIR:At3g21215 InParanoid:Q9ASW4 OMA:EASQVNF
PhylomeDB:Q9ASW4 ProtClustDB:CLSN2680031 Genevestigator:Q9ASW4
Uniprot:Q9ASW4
Length = 339
Score = 175 (66.7 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 261
PC+TLFI NLG N E+EL+ LS PGF +K+ + V F +FE+V A+ L
Sbjct: 231 PCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNL 290
Query: 262 QDSTLPSSDRGGMHIEYARSKMRK 285
Q + +PSS GM I+Y+++ K
Sbjct: 291 QGAVIPSSGSIGMRIQYSKNPYGK 314
Score = 173 (66.0 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ T+F++GLPDDV+ RE+ NL R PG++ Q+ + +G + + FA F Q A+AA
Sbjct: 58 LRTIFIAGLPDDVKERELLNLLRWLPGYEASQVNF--KGEKPMGFALFSTAQFAMAAKDT 115
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKRK-PG-SGAYVVIDKRTKTEANVQES 144
L + FD +S SV+H E+A+ N KR G S AY KR +T + S
Sbjct: 116 LQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQ-SKRLRTGGDCTHS 166
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 31 QDNG-INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAV 89
+DN NTLF+ L +++ E+ +L +PGF Q+K + V F F + +A
Sbjct: 227 KDNPPCNTLFIGNLGENINEEELRSLLSAQPGFK--QMKILRQERHTVCFIEFEDVNSAT 284
Query: 90 AALHELNGVKFDPQSGSV-LHIELARSNSRKKRKPGSG 126
H L G P SGS+ + I+ ++ N KRK G G
Sbjct: 285 NVHHNLQGAVI-PSSGSIGMRIQYSK-NPYGKRKEGGG 320
>FB|FBgn0263995 [details] [associations]
symbol:cpo "couch potato" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS;IDA] [GO:0007422 "peripheral nervous system
development" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007268 "synaptic
transmission" evidence=IMP] [GO:0042048 "olfactory behavior"
evidence=IMP] [GO:0022611 "dormancy process" evidence=IMP]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007275 GO:GO:0005634
GO:GO:0000166 GO:GO:0007268 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0042048 GO:GO:0035206 CTD:130749 EMBL:Z14311 EMBL:Z14312
EMBL:Z14974 EMBL:AY129455 EMBL:BT001569 PIR:A46230 PIR:S24761
RefSeq:NP_001014631.2 RefSeq:NP_001014632.2 RefSeq:NP_001163640.1
RefSeq:NP_001163641.1 RefSeq:NP_524844.5 RefSeq:NP_732282.5
RefSeq:NP_732283.4 RefSeq:NP_732284.4 UniGene:Dm.6154
ProteinModelPortal:Q01617 SMR:Q01617 IntAct:Q01617 MINT:MINT-335471
STRING:Q01617 PaxDb:Q01617 GeneID:45840 GeneID:8674070
KEGG:dme:Dmel_CG31243 KEGG:dme:Dmel_CG42457 FlyBase:FBgn0000363
eggNOG:NOG255204 InParanoid:Q01617 OrthoDB:EOG4H44N8 ChiTaRS:CPO
NextBio:838394 Bgee:Q01617 GermOnline:CG31243 GO:GO:0022611
Uniprot:Q01617
Length = 738
Score = 168 (64.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVNHQTAVAA 91
+ TLFVSGLP D + RE++ LFR G++ LK T + + V F TF A AA
Sbjct: 450 VRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAA 509
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSR-KKRKP 123
+L GV+FDP + +E A+SN++ K KP
Sbjct: 510 KQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPKP 542
Score = 90 (36.7 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM 235
PCSTLF+ANLG +E ELK+ S + N LK+
Sbjct: 702 PCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKL 735
Score = 36 (17.7 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 222 QTLSVYPGFNMLKMRARGGMPVA 244
QT +++PG M M A A
Sbjct: 620 QTTAIHPGAAMAHMAAAAAAAAA 642
>UNIPROTKB|Q9YGP5 [details] [associations]
symbol:rbpms "RNA-binding protein with multiple splicing"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=ISS]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOVERGEN:HBG069897 CTD:11030 EMBL:AF107889
EMBL:BC097507 RefSeq:NP_001081864.1 UniGene:Xl.449
ProteinModelPortal:Q9YGP5 GeneID:398092 KEGG:xla:398092
Uniprot:Q9YGP5
Length = 196
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF N A AA +
Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 77 LNGIRFDPENPQTLRLEFAKANTK 100
>ZFIN|ZDB-GENE-040426-741 [details] [associations]
symbol:rbpms2b "RNA binding protein with multiple
splicing 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-741 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
GeneTree:ENSGT00500000044861 EMBL:BX663612 EMBL:CR354581
EMBL:BC048876 EMBL:BC066414 EMBL:AB080736 IPI:IPI00498043
RefSeq:NP_956553.1 UniGene:Dr.81683 STRING:Q7ZUL7
Ensembl:ENSDART00000006619 GeneID:393229 KEGG:dre:393229 CTD:393229
OMA:TDIKPRE NextBio:20814293 Uniprot:Q7ZUL7
Length = 200
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 19 VRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNGV+FDP++ L +E A++N++
Sbjct: 77 LNGVRFDPENPQTLRLEFAKANTK 100
>ZFIN|ZDB-GENE-040718-106 [details] [associations]
symbol:rbpms2a "RNA binding protein with multiple
splicing 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040718-106 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:BX296538
EMBL:CU570688 EMBL:BC076171 EMBL:BC152178 IPI:IPI00486507
RefSeq:NP_001002409.1 UniGene:Dr.82744 STRING:Q6DH13
Ensembl:ENSDART00000067514 GeneID:436682 KEGG:dre:436682 CTD:436682
InParanoid:Q6DH13 NextBio:20831125 Uniprot:Q6DH13
Length = 199
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 19 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+S L +E A++N++
Sbjct: 77 LNGIRFDPESPQTLRLEFAKANTK 100
>UNIPROTKB|F1NZ89 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 EMBL:AADN02051088 IPI:IPI00819063
Ensembl:ENSGALT00000003715 Uniprot:F1NZ89
Length = 180
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 59 LNGIRFDPENPQTLRLEFAKANTK 82
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 19 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 77 LNGIRFDPENPQTLRLEFAKANTK 100
>UNIPROTKB|Q9W6I1 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0010862 "positive
regulation of pathway-restricted SMAD protein phosphorylation"
evidence=ISS] [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
eggNOG:NOG255204 GO:GO:0008143 EMBL:AF129933 IPI:IPI00591826
RefSeq:NP_990200.1 UniGene:Gga.2695 ProteinModelPortal:Q9W6I1
GeneID:395678 KEGG:gga:395678 CTD:348093 HOGENOM:HOG000017369
HOVERGEN:HBG069897 InParanoid:Q9W6I1 OrthoDB:EOG42RD8G
NextBio:20815750 Uniprot:Q9W6I1
Length = 200
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 21 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 78
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 79 LNGIRFDPENPQTLRLEFAKANTK 102
>UNIPROTKB|F1MAV3 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:DAAA02060452 IPI:IPI00722097
UniGene:Bt.106824 Ensembl:ENSBTAT00000047899 Uniprot:F1MAV3
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|E2R5F7 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=IEA] [GO:0010862 "positive regulation
of pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 CTD:11030 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AAEX03010423 EMBL:AAEX03010424
RefSeq:XP_532815.3 ProteinModelPortal:E2R5F7 PRIDE:E2R5F7
Ensembl:ENSCAFT00000010500 GeneID:475599 KEGG:cfa:475599
NextBio:20851407 Uniprot:E2R5F7
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|B4E3T4 [details] [associations]
symbol:RBPMS "HCG2043421, isoform CRA_c" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000017369 HOVERGEN:HBG069897 UniGene:Hs.334587
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 EMBL:AK304858 IPI:IPI00908913 SMR:B4E3T4
STRING:B4E3T4 Ensembl:ENST00000517860 UCSC:uc011lba.1
Uniprot:B4E3T4
Length = 224
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|Q93062 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IDA]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0006396 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOGENOM:HOG000017369 HOVERGEN:HBG069897 EMBL:D84110
EMBL:D84107 EMBL:D84108 EMBL:D84109 EMBL:D84111 EMBL:BC003608
IPI:IPI00004045 IPI:IPI00101800 IPI:IPI00216935 IPI:IPI00216936
IPI:IPI00414709 PIR:JC6127 RefSeq:NP_001008710.1
RefSeq:NP_001008711.1 RefSeq:NP_001008712.1 RefSeq:NP_006858.1
UniGene:Hs.334587 PDB:1BNY PDBsum:1BNY ProteinModelPortal:Q93062
SMR:Q93062 IntAct:Q93062 MINT:MINT-1434067 STRING:Q93062
DMDM:13124469 PaxDb:Q93062 PRIDE:Q93062 Ensembl:ENST00000287771
Ensembl:ENST00000320203 Ensembl:ENST00000339877
Ensembl:ENST00000397323 GeneID:11030 KEGG:hsa:11030 UCSC:uc003xib.3
UCSC:uc003xic.1 UCSC:uc003xid.1 CTD:11030 GeneCards:GC08P030242
HGNC:HGNC:19097 MIM:601558 neXtProt:NX_Q93062 PharmGKB:PA134985584
eggNOG:NOG292253 OMA:PEVWGPY OrthoDB:EOG4NGGNV ChiTaRS:RBPMS
GenomeRNAi:11030 NextBio:41912 ArrayExpress:Q93062 Bgee:Q93062
CleanEx:HS_RBPMS Genevestigator:Q93062 GermOnline:ENSG00000157110
Uniprot:Q93062
Length = 196
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|F1RX64 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:CU914373 EMBL:FP236445
Ensembl:ENSSSCT00000017254 Uniprot:F1RX64
Length = 215
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|F1N2U8 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:DAAA02028733 IPI:IPI00688079
Ensembl:ENSBTAT00000014659 Uniprot:F1N2U8
Length = 203
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 24 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 81
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 82 LNGIRFDPENPQTLRLEFAKANTK 105
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 34 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 91
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 92 LNGIRFDPENPQTLRLEFAKANTK 115
>UNIPROTKB|Q6ZRY4 [details] [associations]
symbol:RBPMS2 "RNA-binding protein with multiple splicing
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG255204 CTD:348093 HOGENOM:HOG000017369 HOVERGEN:HBG069897
OrthoDB:EOG42RD8G EMBL:AY369207 EMBL:AK127873 IPI:IPI00238688
RefSeq:NP_919248.1 UniGene:Hs.436518 HSSP:P09012
ProteinModelPortal:Q6ZRY4 SMR:Q6ZRY4 STRING:Q6ZRY4
PhosphoSite:Q6ZRY4 DMDM:74762401 PaxDb:Q6ZRY4 PRIDE:Q6ZRY4
DNASU:348093 Ensembl:ENST00000300069 GeneID:348093 KEGG:hsa:348093
UCSC:uc002anq.3 GeneCards:GC15M065032 HGNC:HGNC:19098
neXtProt:NX_Q6ZRY4 PharmGKB:PA134871904 InParanoid:Q6ZRY4
OMA:KLTSRQP PhylomeDB:Q6ZRY4 ChiTaRS:RBPMS2 GenomeRNAi:348093
NextBio:99336 ArrayExpress:Q6ZRY4 Bgee:Q6ZRY4 CleanEx:HS_RBPMS2
Genevestigator:Q6ZRY4 Uniprot:Q6ZRY4
Length = 209
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 30 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKNA 87
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 88 LNGIRFDPENPQTLRLEFAKANTK 111
>UNIPROTKB|F1S0B2 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:CU633631
Ensembl:ENSSSCT00000005024 Uniprot:F1S0B2
Length = 195
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 15 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 72
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 73 LNGIRFDPENPQTLRLEFAKANTK 96
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 24 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 81
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 82 LNGIRFDPENPQTLRLEFAKANTK 105
>RGD|1561222 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1561222 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:KLTSRQP GeneTree:ENSGT00500000044861
IPI:IPI00766399 Ensembl:ENSRNOT00000021337 UCSC:RGD:1561222
ArrayExpress:F1M9N3 Uniprot:F1M9N3
Length = 181
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 59 LNGIRFDPENPQTLRLEFAKANTK 82
>UNIPROTKB|F1NAP9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AADN02016141 IPI:IPI00588016
Ensembl:ENSGALT00000016744 Uniprot:F1NAP9
Length = 196
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 23 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 80
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 81 LNGIRFDPEIPQTLRLEFAKANTK 104
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTK 82
>UNIPROTKB|F1M7J8 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00767399
Ensembl:ENSRNOT00000046138 ArrayExpress:F1M7J8 Uniprot:F1M7J8
Length = 175
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTK 82
>UNIPROTKB|F1M9Y9 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0010862
"positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143
GeneTree:ENSGT00500000044861 IPI:IPI00364663
Ensembl:ENSRNOT00000017883 ArrayExpress:F1M9Y9 Uniprot:F1M9Y9
Length = 198
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTK 82
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 158 (60.7 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97
LFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA + LNG
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNALNG 59
Query: 98 VKFDPQSGSVLHIELARSNSR 118
++FDP+ L +E A++N++
Sbjct: 60 IRFDPEIPQTLRLEFAKANTK 80
>POMBASE|SPCC320.07c [details] [associations]
symbol:mde7 "RNA-binding protein Mde7" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IEP] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPCC320.07c GO:GO:0007126 GO:GO:0005737
GO:GO:0008380 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG12793
PIR:T41304 RefSeq:NP_587722.1 ProteinModelPortal:O59784
EnsemblFungi:SPCC320.07c.1 GeneID:2538704 KEGG:spo:SPCC320.07c
OrthoDB:EOG42592X NextBio:20799889 Uniprot:O59784
Length = 761
Score = 139 (54.0 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 261
PC+T+++ NL E +L+ S G+ L + +G P+ F +FEEV A+ AME +
Sbjct: 600 PCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEKM 659
Query: 262 QDSTLPSSDRGGMHIEYARSKM 283
Q + L +GG+ + Y+++ +
Sbjct: 660 QGAALDDKIKGGIRLSYSKNPL 681
Score = 73 (30.8 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 38/143 (26%), Positives = 63/143 (44%)
Query: 40 VSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVK 99
V GLPDD RE+ +F G+DF +++ + + + F N A+ A + LN
Sbjct: 224 VGGLPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVY--FRNAIAALKAKNMLNASS 281
Query: 100 FDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTD---EA 156
+ + +++ ++ R + K G I T T + + S + DS T
Sbjct: 282 TN--NFTIIQRDVVRQQENEYHK---G----IPPLT-TPSLYSQRLSNNYDSTTPGFPRF 331
Query: 157 SPVRNIDSADKGDFVTTQSERAT 179
SP N DS D VT++S +T
Sbjct: 332 SPA-NFDSVINKD-VTSESRMST 352
>POMBASE|SPCC16C4.07 [details] [associations]
symbol:scw1 "RNA-binding protein Scw1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0032955 "regulation of
barrier septum assembly" evidence=IGI] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPCC16C4.07 GO:GO:0005737 GO:GO:0032995 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032955 OrthoDB:EOG42592X PIR:T41097
RefSeq:NP_587917.1 ProteinModelPortal:O74452 STRING:O74452
EnsemblFungi:SPCC16C4.07.1 GeneID:2539358 KEGG:spo:SPCC16C4.07
eggNOG:NOG255497 NextBio:20800523 Uniprot:O74452
Length = 561
Score = 157 (60.3 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 261
PC+T+++ NL P+ +E+ELK S G+ L R +G P+ F +FE + A A++ L
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNL 483
Query: 262 QDSTLPSSDRGGMHIEYARSKM 283
Q L SS +GG+ + ++++ +
Sbjct: 484 QGVCLSSSIKGGIRLSFSKNPL 505
>UNIPROTKB|G5EH29 [details] [associations]
symbol:MGCH7_ch7g848 "RNA binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003720628.1
ProteinModelPortal:G5EH29 EnsemblFungi:MGG_03053T0 GeneID:2682606
KEGG:mgr:MGG_03053 Uniprot:G5EH29
Length = 622
Score = 148 (57.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 31/102 (30%), Positives = 57/102 (55%)
Query: 182 GNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM 241
G++ P+N + P PC+TL++ NL + +E+ELK T S G+ L R +
Sbjct: 402 GHSFPPVNPADQNP------PCNTLYVGNLPIDTSEEELKATFSKQRGYKRLCFRTKQNG 455
Query: 242 PVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283
P+ F +FE+V A+ A+ L L +S +GG+ + ++++ +
Sbjct: 456 PMCFVEFEDVSFATKALHELYGHMLHNSVKGGIRLSFSKNPL 497
>SGD|S000002383 [details] [associations]
symbol:WHI4 "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008361 "regulation of cell size"
evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000002383 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 GO:GO:0008361
GO:GO:0003723 OrthoDB:EOG42592X HSSP:P09012 eggNOG:NOG255497
GeneTree:ENSGT00530000067542 HOGENOM:HOG000074699 EMBL:Z74272
PIR:S67787 RefSeq:NP_010057.1 ProteinModelPortal:Q07655 SMR:Q07655
DIP:DIP-4321N IntAct:Q07655 MINT:MINT-531190 STRING:Q07655
PaxDb:Q07655 PeptideAtlas:Q07655 EnsemblFungi:YDL224C GeneID:851302
KEGG:sce:YDL224C CYGD:YDL224c NextBio:968310 Genevestigator:Q07655
GermOnline:YDL224C Uniprot:Q07655
Length = 649
Score = 135 (52.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 50/179 (27%), Positives = 86/179 (48%)
Query: 121 RKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPV-RNIDSADKGDFVTTQSERAT 179
+K G ++V ++ T T + +E SS T AS +N ++ G +Q++ +
Sbjct: 463 QKVNQG-FLVSEQDTSTISRQKECSS------TASASAFSKNNETNVAGSTTISQADLSL 515
Query: 180 DSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNML----KM 235
P N + P PC+TL++ NL P+ TE EL+Q S GF L KM
Sbjct: 516 -LAKVPPPANPADQNP------PCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKM 568
Query: 236 RARG-GM-----PVAFADFEEVEQASIAMEGLQDSTLPS-----SDRGGMHIEYARSKM 283
+ G G P+ F +FE+V A+ A+ L S LP +++GG+ + ++++ +
Sbjct: 569 NSHGHGNGHGHGPICFVEFEDVSFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPL 627
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 99 (39.9 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAMEG 260
P + LFI NL T L+ YPGF ++M A+ G +AF ++E+ QASIAM+
Sbjct: 156 PNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG--IAFVEYEDDVQASIAMQP 213
Query: 261 LQDSTLPSSDRGGMHIEYAR 280
LQ + + + M I +A+
Sbjct: 214 LQGFKI--TPQNPMVISFAK 231
Score = 63 (27.2 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 29/112 (25%), Positives = 42/112 (37%)
Query: 64 FCQLKYTGRGNQVVAFAT-------FVNHQTAVAALHELNGVKFDPQSGSVLHIELARSN 116
+C GR VVA T +V AA H + ++ P + ++ A++
Sbjct: 31 YCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAK 90
Query: 117 SRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKG 168
S K G +V DK+ K E V E D P N SA+ G
Sbjct: 91 SDCLAK-AEGTFVPKDKKRKQEEKV-ERKREDSQRPNTANGPSANGPSANNG 140
>ASPGD|ASPL0000063387 [details] [associations]
symbol:AN7700 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001304 EMBL:AACD01000130
OrthoDB:EOG42592X eggNOG:NOG255497 RefSeq:XP_680969.1
ProteinModelPortal:Q5AVI0 EnsemblFungi:CADANIAT00000831
GeneID:2869448 KEGG:ani:AN7700.2 HOGENOM:HOG000174215 OMA:NSVKGGI
Uniprot:Q5AVI0
Length = 628
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 261
PC+TL++ NL P+ E+ELK S G+ L R + P+ F +FE+V A + L
Sbjct: 411 PCNTLYVGNLPPDTQEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFEDVRTAGKTLNEL 470
Query: 262 QDSTLPSSDRGGMHIEYARSKM 283
L +S + G+ + ++++ +
Sbjct: 471 YGYKLSNSIKTGIRLSFSKNPL 492
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 121 (47.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 172 TTQSERATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFN 231
T+ S G+A+ P QS G PCSTLF++NL + TE EL GF
Sbjct: 245 TSLSSSHYHGGSALPP---QSSISTTG--MPCSTLFVSNLPKDVTERELSILFRFMRGFV 299
Query: 232 MLKM-RARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD-RGGMHIEYARS 281
+++ G +P+ F DF + + + A+E LQ + +SD + IE+ ++
Sbjct: 300 GIRLINKEGKLPMCFCDFIDTQSSMFALEFLQGFRMDASDISSSISIEFDKA 351
Score = 113 (44.8 bits), Expect = 0.00050, P = 0.00050
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95
+TLFVS LP DV RE+ LFR GF +L G + F F++ Q+++ AL L
Sbjct: 272 STLFVSNLPKDVTERELSILFRFMRGFVGIRL-INKEGKLPMCFCDFIDTQSSMFALEFL 330
Query: 96 NGVKFDPQS-GSVLHIELARSNSRKK 120
G + D S + IE ++N + +
Sbjct: 331 QGFRMDASDISSSISIEFDKANHKSR 356
>CGD|CAL0002334 [details] [associations]
symbol:WHI3 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007124 "pseudohyphal growth"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IEA] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IEA] [GO:0008361 "regulation of cell size"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002334 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:NOG255497
RefSeq:XP_720821.1 RefSeq:XP_721334.1 RefSeq:XP_888839.1
ProteinModelPortal:Q5AH44 STRING:Q5AH44 GeneID:3636991
GeneID:3637479 GeneID:3703850 KEGG:cal:CaO19.13847
KEGG:cal:CaO19.6494 KEGG:cal:CaO19_6494 Uniprot:Q5AH44
Length = 704
Score = 100 (40.3 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 41/159 (25%), Positives = 68/159 (42%)
Query: 102 PQSGSVLHIELARSNS-------RKKRKPGSGAYVV--------IDKRTKTEANVQESS- 145
PQS S LHI+ +++ +++++P + + + I N+ + S
Sbjct: 431 PQSQSQLHIQQSQAQQHHQQQQQQQQQQPNTQSQIAPQTSNTSSITNEFHAPPNISQQSI 490
Query: 146 -SADGDSDTDEASPVRN-IDSA-DKGDFVTTQSERATDSG---NAVAPINEQSEKPYEGG 199
S + T ++P + I S DKG +T S+ D P N + P
Sbjct: 491 TSNQNTTSTSTSTPTQQAITSPLDKG---STSSKDVPDLSLLARVPPPANPADQNP---- 543
Query: 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR 238
PC+TL++ NL P+ TE EL+ S GF L R +
Sbjct: 544 --PCNTLYVGNLPPDATESELRTLFSPQKGFRRLSFRTK 580
Score = 59 (25.8 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 242 PVAFADFEEVEQASIAMEGLQDSTLP----SSDRGGMHIEYARSKM 283
P+ F +FE+V A+ A+ L LP + +GG+ + ++++ +
Sbjct: 605 PMCFVEFEDVAHATRALAELYGRALPRPNGGNGKGGIRLSFSKNPL 650
Score = 45 (20.9 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 29 QQQDNGINT--LFVSGLPDDVRAREIHNLF 56
QQ D+ + T L +S LP D+ RE +F
Sbjct: 44 QQVDSNMTTGLLKISNLPPDLTRREATLIF 73
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 117 (46.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 52/204 (25%), Positives = 86/204 (42%)
Query: 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
A+ F N ++A A+ ++N F + + I+ A++ S K G +V +KR +
Sbjct: 63 AWVVFDNTESASTAIAKMNNFPFYDKE---MRIQYAKTKSDVVAK-ADGTFVPREKRKRH 118
Query: 138 EANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKPYE 197
E D D+ + N SA G + A P + P E
Sbjct: 119 EEKGGGKKKKDQHHDSTQMGMPMN--SAYPGVYGA-----APPLSQVPYPGGMKPNMP-E 170
Query: 198 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASI 256
P + LF+ NL T L+ Y GF ++M A+ G +AF +F + Q+++
Sbjct: 171 APAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--IAFVEFADEMQSTV 228
Query: 257 AMEGLQDSTLPSSDRGGMHIEYAR 280
AM+GLQ + + M I YA+
Sbjct: 229 AMQGLQGFKIQQNQ---MLITYAK 249
>SGD|S000005141 [details] [associations]
symbol:WHI3 "RNA binding protein that sequesters CLN3 mRNA in
cytoplasmic foci" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;ISS;IMP;IDA] [GO:0008361
"regulation of cell size" evidence=IGI;IMP] [GO:0007124
"pseudohyphal growth" evidence=IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IMP] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005141
GO:GO:0005737 GO:GO:0051220 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006947 GO:GO:0008361 GO:GO:0003723 GO:GO:0007049
GO:GO:0001403 GO:GO:0007124 EMBL:X78898 OrthoDB:EOG42592X
eggNOG:NOG255497 EMBL:U01095 EMBL:Z71473 PIR:S50734
RefSeq:NP_014202.1 ProteinModelPortal:P34761 SMR:P34761
IntAct:P34761 MINT:MINT-4500279 STRING:P34761 PaxDb:P34761
PeptideAtlas:P34761 EnsemblFungi:YNL197C GeneID:855524
KEGG:sce:YNL197C CYGD:YNL197c GeneTree:ENSGT00530000067542
HOGENOM:HOG000074699 OMA:QRSRFSF NextBio:979559
Genevestigator:P34761 GermOnline:YNL197C Uniprot:P34761
Length = 661
Score = 118 (46.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM-------PVAFADFEEVEQA 254
PC+TL++ NL + TE EL+Q S GF L R + P+ F +F++V A
Sbjct: 536 PCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFA 595
Query: 255 SIAMEGLQDSTLPSS---DRGGMHIEYARSKM 283
+ A+ L LP S +GG+ + ++++ +
Sbjct: 596 TRALAELYGRQLPRSTVSSKGGIRLSFSKNPL 627
Score = 42 (19.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 INTLFVSGLPDDVRAREIHN 54
+NTL + +P D+ + I N
Sbjct: 74 LNTLALGSMPQDIASSNISN 93
>DICTYBASE|DDB_G0288391 [details] [associations]
symbol:snrpB2 "U2 small nuclear ribonucleoprotein B"
species:44689 "Dictyostelium discoideum" [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0288391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GenomeReviews:CM000154_GR EMBL:AAFI02000111
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HSSP:P09012 KO:K11094 RefSeq:XP_636725.1 ProteinModelPortal:Q54J05
STRING:Q54J05 EnsemblProtists:DDB0233135 GeneID:8626602
KEGG:ddi:DDB_G0288391 OMA:IFGQFPG ProtClustDB:CLSZ2429888
Uniprot:Q54J05
Length = 241
Score = 112 (44.5 bits), Expect = 0.00029, P = 0.00029
Identities = 51/187 (27%), Positives = 80/187 (42%)
Query: 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
AF F + +A AL E+NG F + + I+ +S S K G Y+ +K+ +
Sbjct: 57 AFIVFKDITSASNALREMNGFNFLDRP---MKIQYCKSKSDAVSKL-DGTYM--EKKRER 110
Query: 138 EANVQESSSADGD-SDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKPY 196
E N ++ S+ D T + + A TT + T S V S +P
Sbjct: 111 EENDKKGSNKKQDRKSTGQQQQQQKRPGAPTS---TTSTTSPTTSNGTV------SLQPR 161
Query: 197 EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQAS 255
+ P TLF+ NL C L S + GF + M ++ G +AF +FE+ ++
Sbjct: 162 DD--PPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKG--IAFIEFEDEIKSG 217
Query: 256 IAMEGLQ 262
AM LQ
Sbjct: 218 FAMTNLQ 224
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 99 (39.9 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 37/131 (28%), Positives = 61/131 (46%)
Query: 142 QESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSG--NAVAPINEQSEKPYEGG 199
Q+ D S+ E P ++ G+ T + E T+ G N+ A + E+ E+ E
Sbjct: 668 QKKKLQDTPSEPMEKDPAEP-ETVPDGE--TPEDENPTEEGADNSSAKMEEEEEEEEEEE 724
Query: 200 VQ-PCSTLFIANLGPNCTEDELKQTLS---VYPGFNMLKMRARGG----MPVAFADFEEV 251
P TLFI NL + TE++LK+ S ++ K + + G M F ++ +
Sbjct: 725 ESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKP 784
Query: 252 EQASIAMEGLQ 262
EQA A++ LQ
Sbjct: 785 EQAQKALKQLQ 795
Score = 62 (26.9 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 32/120 (26%), Positives = 53/120 (44%)
Query: 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT----GRGNQVVAFATFVNHQTAVAALH 93
LFV LP ++ LF K G +L Y + + AF TF+ + AV A
Sbjct: 404 LFVRNLPYTSTEEDLEKLFS-KYG-PLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYS 461
Query: 94 ELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDT 153
E++G F G +LH+ S +K+ + A + K EA + +S++ + +T
Sbjct: 462 EVDGQVFQ---GRMLHV--LPSTIKKEASEDASALGSSSYKKKKEAQDKANSASSHNWNT 516
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 286 260 0.00089 114 3 11 23 0.38 34
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 42
No. of states in DFA: 569 (61 KB)
Total size of DFA: 166 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.42u 0.10s 24.52t Elapsed: 00:00:01
Total cpu time: 24.43u 0.10s 24.53t Elapsed: 00:00:02
Start: Sat May 11 12:36:58 2013 End: Sat May 11 12:37:00 2013