Query 023143
Match_columns 286
No_of_seqs 110 out of 1452
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 08:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1457 RNA binding protein (c 100.0 1.3E-33 2.9E-38 222.9 19.4 270 8-277 7-284 (284)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.7E-32 8E-37 242.9 26.6 245 34-284 2-351 (352)
3 TIGR01659 sex-lethal sex-letha 100.0 1.9E-32 4E-37 240.9 21.3 166 33-283 105-276 (346)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.4E-30 1.2E-34 236.9 25.7 202 32-283 272-481 (481)
5 KOG0117 Heterogeneous nuclear 100.0 7.3E-31 1.6E-35 226.1 17.3 230 33-283 81-332 (506)
6 TIGR01645 half-pint poly-U bin 100.0 2.3E-30 5E-35 239.1 21.0 175 33-283 105-285 (612)
7 KOG0148 Apoptosis-promoting RN 100.0 2.6E-30 5.6E-35 209.8 16.0 175 36-283 63-239 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.2E-29 4.8E-34 232.8 21.7 172 34-282 1-174 (481)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 1.2E-28 2.7E-33 227.3 20.3 233 33-283 56-308 (578)
10 TIGR01622 SF-CC1 splicing fact 100.0 2E-28 4.2E-33 226.2 21.3 175 32-282 86-266 (457)
11 TIGR01628 PABP-1234 polyadenyl 100.0 4.1E-28 8.9E-33 229.2 19.6 161 37-282 2-167 (562)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-27 5.2E-32 221.8 22.8 191 29-282 169-375 (509)
13 TIGR01628 PABP-1234 polyadenyl 100.0 2.3E-27 5E-32 224.1 19.4 185 33-283 176-365 (562)
14 KOG0144 RNA-binding protein CU 100.0 1.1E-27 2.5E-32 205.6 15.4 172 33-285 32-209 (510)
15 TIGR01622 SF-CC1 splicing fact 99.9 1.9E-25 4.2E-30 206.2 25.6 239 34-281 185-447 (457)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.3E-26 1.6E-30 211.8 22.0 190 32-280 292-500 (509)
17 KOG4206 Spliceosomal protein s 99.9 1.2E-25 2.6E-30 179.3 18.7 211 33-281 7-221 (221)
18 KOG0109 RNA-binding protein LA 99.9 6.3E-27 1.4E-31 191.9 10.9 150 37-285 4-153 (346)
19 KOG0145 RNA-binding protein EL 99.9 2.8E-25 6E-30 179.6 19.8 244 33-283 38-359 (360)
20 KOG0127 Nucleolar protein fibr 99.9 1.7E-25 3.8E-30 197.2 19.6 238 35-281 117-377 (678)
21 KOG0131 Splicing factor 3b, su 99.9 1.5E-25 3.2E-30 172.3 12.8 166 31-282 5-177 (203)
22 KOG0144 RNA-binding protein CU 99.9 3.1E-25 6.8E-30 190.7 13.8 87 33-119 122-209 (510)
23 KOG0146 RNA-binding protein ET 99.9 1.8E-24 3.9E-29 175.6 14.0 246 34-282 18-365 (371)
24 KOG0127 Nucleolar protein fibr 99.9 4E-24 8.6E-29 188.7 16.5 187 35-282 5-196 (678)
25 KOG0110 RNA-binding protein (R 99.9 1.3E-23 2.8E-28 190.8 12.6 167 37-281 517-692 (725)
26 KOG0123 Polyadenylate-binding 99.9 6E-22 1.3E-26 175.4 16.7 150 36-282 2-153 (369)
27 KOG0123 Polyadenylate-binding 99.9 1.7E-21 3.7E-26 172.5 15.1 166 38-283 79-247 (369)
28 TIGR01645 half-pint poly-U bin 99.9 5.8E-20 1.3E-24 170.4 24.3 82 33-117 202-285 (612)
29 KOG0147 Transcriptional coacti 99.9 1.1E-21 2.3E-26 174.0 11.2 233 33-280 276-526 (549)
30 KOG0124 Polypyrimidine tract-b 99.8 5.6E-21 1.2E-25 161.5 10.2 173 35-283 113-291 (544)
31 KOG1190 Polypyrimidine tract-b 99.8 7E-19 1.5E-23 150.8 18.5 194 35-282 297-491 (492)
32 KOG0105 Alternative splicing f 99.8 1.4E-18 3E-23 134.2 17.7 182 32-276 3-184 (241)
33 KOG0110 RNA-binding protein (R 99.8 2.6E-19 5.7E-24 163.0 15.2 208 33-282 383-598 (725)
34 KOG0148 Apoptosis-promoting RN 99.8 1.6E-19 3.4E-24 147.2 10.8 139 31-284 2-144 (321)
35 KOG1456 Heterogeneous nuclear 99.8 2.2E-17 4.7E-22 140.3 22.6 234 32-282 117-363 (494)
36 KOG1190 Polypyrimidine tract-b 99.8 9.1E-18 2E-22 144.0 17.3 223 34-282 149-373 (492)
37 KOG0147 Transcriptional coacti 99.8 2.8E-19 6E-24 158.8 8.3 176 32-281 176-357 (549)
38 PLN03134 glycine-rich RNA-bind 99.8 1.3E-17 2.7E-22 129.4 12.3 79 202-283 33-115 (144)
39 KOG1548 Transcription elongati 99.7 7.9E-16 1.7E-20 129.7 17.2 197 32-278 131-348 (382)
40 KOG0106 Alternative splicing f 99.7 3.4E-17 7.4E-22 132.4 8.6 166 36-278 2-167 (216)
41 PLN03134 glycine-rich RNA-bind 99.7 2.5E-16 5.5E-21 122.1 12.8 82 32-116 31-114 (144)
42 KOG4212 RNA-binding protein hn 99.7 2.8E-15 6.1E-20 129.9 18.6 215 34-278 43-290 (608)
43 PF00076 RRM_1: RNA recognitio 99.7 5.4E-16 1.2E-20 105.3 8.6 69 38-109 1-70 (70)
44 KOG0125 Ataxin 2-binding prote 99.7 4.2E-16 9.1E-21 130.5 9.4 83 32-117 93-175 (376)
45 KOG4205 RNA-binding protein mu 99.7 7.8E-16 1.7E-20 132.2 10.7 164 34-280 5-174 (311)
46 TIGR01648 hnRNP-R-Q heterogene 99.6 1.2E-15 2.6E-20 141.5 12.1 75 33-116 231-307 (578)
47 KOG1456 Heterogeneous nuclear 99.6 8.6E-14 1.9E-18 118.6 22.0 201 32-282 284-491 (494)
48 KOG0121 Nuclear cap-binding pr 99.6 5.2E-16 1.1E-20 113.0 7.1 80 32-114 33-114 (153)
49 PF00076 RRM_1: RNA recognitio 99.6 7.2E-16 1.6E-20 104.7 7.4 67 206-275 1-70 (70)
50 TIGR01659 sex-lethal sex-letha 99.6 1.9E-15 4.2E-20 133.3 10.9 79 200-281 104-186 (346)
51 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 5.4E-15 1.2E-19 132.2 13.3 81 33-116 267-349 (352)
52 KOG4212 RNA-binding protein hn 99.6 7.9E-14 1.7E-18 121.0 18.2 74 201-279 534-608 (608)
53 KOG0107 Alternative splicing f 99.6 3.6E-15 7.9E-20 114.5 8.1 78 34-117 9-86 (195)
54 KOG0124 Polypyrimidine tract-b 99.6 8.2E-14 1.8E-18 118.4 16.6 80 34-116 209-290 (544)
55 KOG0122 Translation initiation 99.6 7E-15 1.5E-19 118.7 8.6 78 202-282 188-269 (270)
56 PLN03120 nucleic acid binding 99.6 1.1E-14 2.4E-19 120.8 9.9 76 35-115 4-79 (260)
57 PLN03120 nucleic acid binding 99.6 1.7E-14 3.6E-19 119.8 10.2 75 203-281 4-79 (260)
58 KOG0114 Predicted RNA-binding 99.5 3.4E-14 7.3E-19 99.8 8.6 80 33-116 16-95 (124)
59 KOG0125 Ataxin 2-binding prote 99.5 3.1E-14 6.8E-19 119.4 9.9 77 203-282 96-174 (376)
60 KOG0114 Predicted RNA-binding 99.5 4.1E-14 9E-19 99.3 8.5 74 203-279 18-92 (124)
61 PLN03213 repressor of silencin 99.5 2.7E-14 5.8E-19 125.7 9.2 78 202-282 9-88 (759)
62 PF14259 RRM_6: RNA recognitio 99.5 9.1E-14 2E-18 94.5 8.8 69 38-109 1-70 (70)
63 KOG0107 Alternative splicing f 99.5 6E-14 1.3E-18 107.8 8.4 79 202-284 9-87 (195)
64 COG0724 RNA-binding proteins ( 99.5 3.1E-13 6.7E-18 115.8 13.8 173 35-267 115-293 (306)
65 PF14259 RRM_6: RNA recognitio 99.5 6.4E-14 1.4E-18 95.2 7.1 64 206-269 1-67 (70)
66 KOG0145 RNA-binding protein EL 99.5 1.8E-13 3.8E-18 111.5 10.3 78 201-281 39-120 (360)
67 KOG4211 Splicing factor hnRNP- 99.5 1.1E-12 2.5E-17 115.7 15.1 160 32-267 7-170 (510)
68 PLN03121 nucleic acid binding 99.5 2.6E-13 5.6E-18 111.0 10.3 76 34-114 4-79 (243)
69 KOG0122 Translation initiation 99.5 2.9E-13 6.3E-18 109.4 9.8 83 31-116 185-269 (270)
70 PLN03213 repressor of silencin 99.5 2.3E-13 5E-18 119.9 9.5 79 32-115 7-87 (759)
71 KOG0121 Nuclear cap-binding pr 99.5 1.6E-13 3.4E-18 100.1 7.0 76 201-279 34-113 (153)
72 KOG0120 Splicing factor U2AF, 99.5 4.3E-13 9.3E-18 121.0 11.4 181 35-278 289-488 (500)
73 PF13893 RRM_5: RNA recognitio 99.5 2.6E-13 5.7E-18 87.9 7.4 56 220-279 1-56 (56)
74 PLN03121 nucleic acid binding 99.5 4.2E-13 9.2E-18 109.8 9.9 75 202-280 4-79 (243)
75 smart00362 RRM_2 RNA recogniti 99.5 5.1E-13 1.1E-17 90.3 8.5 71 37-110 1-71 (72)
76 KOG4206 Spliceosomal protein s 99.4 3E-13 6.5E-18 108.6 8.2 80 202-284 8-92 (221)
77 KOG0105 Alternative splicing f 99.4 1.7E-13 3.7E-18 106.2 6.5 77 202-281 5-82 (241)
78 smart00362 RRM_2 RNA recogniti 99.4 5.7E-13 1.2E-17 90.1 8.4 70 205-277 1-72 (72)
79 KOG0113 U1 small nuclear ribon 99.4 5.1E-13 1.1E-17 110.9 9.5 81 32-115 98-180 (335)
80 KOG0117 Heterogeneous nuclear 99.4 2.9E-13 6.4E-18 117.9 7.3 77 34-119 258-334 (506)
81 KOG4207 Predicted splicing fac 99.4 2.1E-13 4.4E-18 107.6 5.7 75 203-280 13-91 (256)
82 KOG4207 Predicted splicing fac 99.4 6.4E-13 1.4E-17 104.8 6.3 83 30-115 8-92 (256)
83 cd00590 RRM RRM (RNA recogniti 99.4 4.2E-12 9.1E-17 86.2 9.0 71 205-278 1-74 (74)
84 smart00360 RRM RNA recognition 99.4 3E-12 6.5E-17 86.1 8.0 67 208-277 1-71 (71)
85 PF13893 RRM_5: RNA recognitio 99.4 3E-12 6.6E-17 82.9 7.6 56 52-113 1-56 (56)
86 cd00590 RRM RRM (RNA recogniti 99.4 6.3E-12 1.4E-16 85.4 9.1 73 37-112 1-74 (74)
87 KOG0111 Cyclophilin-type pepti 99.3 7.1E-13 1.5E-17 105.5 4.3 79 202-283 9-91 (298)
88 KOG0130 RNA-binding protein RB 99.3 2.9E-12 6.3E-17 94.4 6.7 75 203-280 72-150 (170)
89 KOG0149 Predicted RNA-binding 99.3 2.9E-12 6.3E-17 103.2 6.4 76 36-115 13-90 (247)
90 KOG0108 mRNA cleavage and poly 99.3 5.8E-12 1.3E-16 113.0 8.8 78 36-116 19-98 (435)
91 smart00360 RRM RNA recognition 99.3 1.2E-11 2.6E-16 83.1 7.9 69 40-111 1-71 (71)
92 KOG0112 Large RNA-binding prot 99.3 3.6E-12 7.8E-17 119.5 6.6 161 32-281 369-530 (975)
93 KOG0111 Cyclophilin-type pepti 99.3 2.3E-12 5.1E-17 102.5 4.6 85 29-116 4-90 (298)
94 KOG0108 mRNA cleavage and poly 99.3 8.7E-12 1.9E-16 111.9 8.4 78 204-284 19-100 (435)
95 KOG0113 U1 small nuclear ribon 99.3 2.7E-11 5.9E-16 100.7 10.5 80 201-283 99-182 (335)
96 KOG0126 Predicted RNA-binding 99.3 4.2E-13 9E-18 103.8 -0.2 73 203-278 35-111 (219)
97 KOG0149 Predicted RNA-binding 99.3 8.1E-12 1.7E-16 100.7 6.9 65 202-267 11-79 (247)
98 COG0724 RNA-binding proteins ( 99.3 2.3E-11 5E-16 104.2 9.5 75 203-280 115-193 (306)
99 KOG0132 RNA polymerase II C-te 99.2 1.7E-11 3.8E-16 113.4 7.6 75 203-282 421-495 (894)
100 KOG1457 RNA binding protein (c 99.2 4.2E-11 9.1E-16 95.7 8.7 82 203-284 34-120 (284)
101 KOG4660 Protein Mei2, essentia 99.2 3.3E-11 7E-16 108.1 8.8 177 32-280 72-248 (549)
102 KOG0120 Splicing factor U2AF, 99.2 6.2E-11 1.3E-15 107.2 10.3 185 27-280 167-367 (500)
103 KOG0130 RNA-binding protein RB 99.2 5.1E-11 1.1E-15 87.9 7.1 83 32-117 69-153 (170)
104 KOG0109 RNA-binding protein LA 99.2 2.8E-11 6E-16 100.4 5.6 77 32-117 75-151 (346)
105 smart00361 RRM_1 RNA recogniti 99.2 1.1E-10 2.3E-15 79.2 6.6 58 217-277 2-70 (70)
106 KOG0132 RNA polymerase II C-te 99.1 9.2E-11 2E-15 108.7 7.9 76 34-116 420-495 (894)
107 smart00361 RRM_1 RNA recogniti 99.1 2.2E-10 4.8E-15 77.7 7.4 59 49-110 2-69 (70)
108 KOG0146 RNA-binding protein ET 99.1 1E-10 2.2E-15 95.9 5.9 83 31-116 281-365 (371)
109 KOG0131 Splicing factor 3b, su 99.1 1.2E-10 2.6E-15 90.4 5.9 75 203-280 9-87 (203)
110 KOG0126 Predicted RNA-binding 99.1 1.1E-11 2.3E-16 96.0 -0.0 78 34-114 34-113 (219)
111 KOG0153 Predicted RNA-binding 99.1 1.9E-10 4.2E-15 97.6 7.4 75 202-281 227-302 (377)
112 KOG0129 Predicted RNA-binding 99.1 3.5E-09 7.6E-14 94.5 15.0 160 34-260 258-432 (520)
113 KOG0153 Predicted RNA-binding 99.1 4.1E-10 8.9E-15 95.6 7.5 78 31-115 224-302 (377)
114 KOG0415 Predicted peptidyl pro 99.0 3.5E-10 7.5E-15 96.2 6.3 81 198-281 234-318 (479)
115 KOG4454 RNA binding protein (R 99.0 5.1E-11 1.1E-15 95.0 0.8 80 31-113 5-84 (267)
116 KOG0415 Predicted peptidyl pro 99.0 4.8E-10 1E-14 95.4 6.3 84 32-118 236-321 (479)
117 KOG4208 Nucleolar RNA-binding 98.9 2.6E-09 5.6E-14 84.8 7.5 75 202-279 48-127 (214)
118 KOG0151 Predicted splicing reg 98.9 2.7E-09 5.9E-14 98.2 6.6 82 197-281 168-256 (877)
119 KOG4661 Hsp27-ERE-TATA-binding 98.9 5.4E-09 1.2E-13 94.1 7.9 78 35-115 405-484 (940)
120 PF04059 RRM_2: RNA recognitio 98.9 1.9E-08 4.1E-13 71.8 9.1 79 204-282 2-87 (97)
121 KOG4661 Hsp27-ERE-TATA-binding 98.9 4.4E-09 9.6E-14 94.7 6.8 78 203-283 405-486 (940)
122 KOG0128 RNA-binding protein SA 98.8 3.8E-10 8.1E-15 105.8 -1.0 135 34-269 666-805 (881)
123 KOG4211 Splicing factor hnRNP- 98.8 2.1E-07 4.6E-12 82.8 15.7 225 33-267 101-346 (510)
124 KOG0116 RasGAP SH3 binding pro 98.8 1.8E-08 4E-13 90.2 8.5 80 33-116 286-367 (419)
125 KOG1365 RNA-binding protein Fu 98.8 8.4E-09 1.8E-13 88.8 5.9 177 37-267 163-350 (508)
126 KOG0151 Predicted splicing reg 98.8 1.9E-08 4.2E-13 92.7 8.1 81 32-115 170-256 (877)
127 KOG4676 Splicing factor, argin 98.7 1.2E-08 2.7E-13 87.9 5.2 202 36-267 8-214 (479)
128 KOG4660 Protein Mei2, essentia 98.7 9.5E-09 2.1E-13 92.6 4.5 75 197-275 69-143 (549)
129 KOG0533 RRM motif-containing p 98.7 4.9E-08 1.1E-12 81.1 8.4 85 35-122 83-168 (243)
130 KOG4210 Nuclear localization s 98.7 1.7E-08 3.7E-13 86.8 5.5 173 33-282 86-264 (285)
131 KOG0533 RRM motif-containing p 98.7 7.6E-08 1.7E-12 80.0 8.5 77 202-281 82-161 (243)
132 PF04059 RRM_2: RNA recognitio 98.7 2E-07 4.4E-12 66.5 9.2 80 36-116 2-87 (97)
133 KOG4208 Nucleolar RNA-binding 98.7 1.1E-07 2.3E-12 75.7 7.8 81 32-115 46-129 (214)
134 KOG0226 RNA-binding proteins [ 98.6 8.8E-08 1.9E-12 78.4 7.3 73 203-278 190-266 (290)
135 KOG0106 Alternative splicing f 98.6 4.7E-08 1E-12 79.6 4.2 73 204-283 2-74 (216)
136 KOG4307 RNA binding protein RB 98.5 2.6E-06 5.7E-11 78.8 14.1 72 203-277 867-942 (944)
137 KOG0116 RasGAP SH3 binding pro 98.5 5.6E-07 1.2E-11 80.8 9.1 75 203-281 288-366 (419)
138 PF11608 Limkain-b1: Limkain b 98.5 7E-07 1.5E-11 60.9 7.1 70 204-282 3-77 (90)
139 PF08777 RRM_3: RNA binding mo 98.5 3.1E-07 6.6E-12 67.1 5.8 60 203-264 1-60 (105)
140 KOG4454 RNA binding protein (R 98.5 7.8E-08 1.7E-12 77.0 2.7 74 202-278 8-83 (267)
141 KOG1548 Transcription elongati 98.4 7.1E-07 1.5E-11 76.2 7.7 78 203-283 134-222 (382)
142 KOG2193 IGF-II mRNA-binding pr 98.4 3E-08 6.5E-13 86.5 -0.9 151 36-279 2-154 (584)
143 KOG4209 Splicing factor RNPS1, 98.4 4.2E-07 9.2E-12 75.7 6.0 77 202-282 100-180 (231)
144 PF11608 Limkain-b1: Limkain b 98.4 3.2E-06 6.9E-11 57.7 8.0 69 36-115 3-76 (90)
145 KOG4209 Splicing factor RNPS1, 98.2 2.7E-06 5.7E-11 71.0 6.3 83 31-117 97-181 (231)
146 KOG4205 RNA-binding protein mu 98.2 1.9E-06 4.2E-11 74.5 5.0 79 34-116 96-176 (311)
147 PF08777 RRM_3: RNA binding mo 98.1 8.1E-06 1.8E-10 59.6 6.4 71 36-113 2-77 (105)
148 KOG4307 RNA binding protein RB 98.1 2.4E-05 5.1E-10 72.7 10.7 194 34-277 310-509 (944)
149 KOG0226 RNA-binding proteins [ 98.1 4.7E-06 1E-10 68.5 4.3 74 35-111 190-265 (290)
150 KOG1365 RNA-binding protein Fu 97.9 0.00023 4.9E-09 62.0 12.5 158 32-260 57-225 (508)
151 COG5175 MOT2 Transcriptional r 97.8 3.8E-05 8.3E-10 65.6 6.2 78 35-115 114-202 (480)
152 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.6E-05 1E-09 48.3 4.9 52 36-92 2-53 (53)
153 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.1E-05 1.3E-09 47.7 5.0 52 204-258 2-53 (53)
154 KOG3152 TBP-binding protein, a 97.7 2.1E-05 4.5E-10 64.8 3.1 68 202-269 73-156 (278)
155 KOG1855 Predicted RNA-binding 97.7 3E-05 6.6E-10 68.2 3.5 67 201-267 229-312 (484)
156 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00022 4.8E-09 51.3 6.9 80 203-286 6-96 (100)
157 KOG1855 Predicted RNA-binding 97.6 3.6E-05 7.7E-10 67.8 3.2 69 33-101 229-312 (484)
158 COG5175 MOT2 Transcriptional r 97.6 0.00011 2.4E-09 62.8 5.9 78 203-283 114-204 (480)
159 KOG2416 Acinus (induces apopto 97.6 9.6E-05 2.1E-09 67.6 5.1 80 32-115 441-521 (718)
160 PF08952 DUF1866: Domain of un 97.4 0.00073 1.6E-08 51.6 7.6 74 198-279 22-104 (146)
161 KOG1995 Conserved Zn-finger pr 97.4 0.00023 4.9E-09 61.6 5.0 81 200-283 63-155 (351)
162 KOG2416 Acinus (induces apopto 97.4 0.00018 3.9E-09 65.9 4.5 80 200-281 441-521 (718)
163 KOG2314 Translation initiation 97.4 0.00027 5.8E-09 64.5 4.9 73 203-277 58-139 (698)
164 KOG3152 TBP-binding protein, a 97.3 0.00016 3.5E-09 59.7 3.1 68 34-101 73-154 (278)
165 KOG1996 mRNA splicing factor [ 97.3 0.0007 1.5E-08 57.0 6.6 74 202-278 280-363 (378)
166 KOG2202 U2 snRNP splicing fact 97.3 0.00012 2.5E-09 60.6 1.9 59 218-279 83-145 (260)
167 PF08675 RNA_bind: RNA binding 97.3 0.0013 2.8E-08 45.1 6.4 54 38-97 11-64 (87)
168 KOG4210 Nuclear localization s 97.3 0.0003 6.5E-09 60.7 4.2 83 30-116 179-264 (285)
169 KOG0112 Large RNA-binding prot 97.2 0.00063 1.4E-08 65.3 5.5 81 31-116 451-531 (975)
170 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0021 4.5E-08 46.3 6.5 72 34-113 5-89 (100)
171 KOG4849 mRNA cleavage factor I 97.0 0.00059 1.3E-08 58.8 3.3 82 202-285 79-166 (498)
172 KOG0115 RNA-binding protein p5 97.0 0.008 1.7E-07 49.9 9.6 79 36-114 32-112 (275)
173 PF15023 DUF4523: Protein of u 96.9 0.0055 1.2E-07 46.3 7.6 76 31-115 82-161 (166)
174 KOG1996 mRNA splicing factor [ 96.9 0.003 6.4E-08 53.3 6.7 64 49-115 300-366 (378)
175 KOG0128 RNA-binding protein SA 96.9 4.9E-05 1.1E-09 72.2 -4.4 157 35-266 571-734 (881)
176 KOG2314 Translation initiation 96.9 0.0037 8.1E-08 57.3 7.6 76 34-111 57-139 (698)
177 PF08952 DUF1866: Domain of un 96.9 0.0045 9.8E-08 47.4 6.8 73 32-114 24-105 (146)
178 KOG4574 RNA-binding protein (c 96.9 0.00078 1.7E-08 64.3 3.0 76 204-282 299-374 (1007)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.0025 5.3E-08 51.1 5.3 77 203-279 7-95 (176)
180 KOG0129 Predicted RNA-binding 96.8 0.0047 1E-07 56.1 7.4 81 29-113 364-451 (520)
181 PF10309 DUF2414: Protein of u 96.7 0.011 2.3E-07 38.5 6.6 53 36-95 6-62 (62)
182 PF07576 BRAP2: BRCA1-associat 96.7 0.061 1.3E-06 39.5 11.2 84 30-113 8-92 (110)
183 KOG1995 Conserved Zn-finger pr 96.6 0.0033 7.1E-08 54.6 4.9 82 32-116 63-154 (351)
184 KOG2202 U2 snRNP splicing fact 96.6 0.0013 2.7E-08 54.6 2.2 62 50-114 83-146 (260)
185 KOG0115 RNA-binding protein p5 96.6 0.0088 1.9E-07 49.7 7.0 64 204-267 32-98 (275)
186 PF15023 DUF4523: Protein of u 96.5 0.016 3.4E-07 44.0 7.5 78 200-284 83-164 (166)
187 KOG2253 U1 snRNP complex, subu 96.5 0.0041 8.9E-08 58.1 5.2 100 1-112 8-107 (668)
188 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0035 7.7E-08 50.2 3.9 83 33-115 5-97 (176)
189 PF10309 DUF2414: Protein of u 96.4 0.025 5.4E-07 36.8 6.9 55 203-261 5-62 (62)
190 KOG2193 IGF-II mRNA-binding pr 96.3 0.0042 9.1E-08 55.0 3.5 74 205-282 3-76 (584)
191 PF04847 Calcipressin: Calcipr 96.0 0.02 4.3E-07 46.1 6.2 60 216-280 8-69 (184)
192 KOG4676 Splicing factor, argin 96.0 0.0093 2E-07 52.4 4.5 63 204-267 8-77 (479)
193 PF07576 BRAP2: BRCA1-associat 95.9 0.23 4.9E-06 36.5 10.7 78 203-280 13-93 (110)
194 PF08675 RNA_bind: RNA binding 95.8 0.035 7.7E-07 38.1 5.5 56 203-263 9-64 (87)
195 KOG4574 RNA-binding protein (c 95.7 0.022 4.8E-07 54.8 5.9 70 41-115 304-373 (1007)
196 KOG2068 MOT2 transcription fac 95.4 0.0062 1.4E-07 52.6 1.1 77 204-283 78-164 (327)
197 KOG4285 Mitotic phosphoprotein 95.2 0.13 2.7E-06 44.0 8.1 61 203-267 197-257 (350)
198 PF03880 DbpA: DbpA RNA bindin 95.1 0.049 1.1E-06 36.9 4.6 66 205-279 2-74 (74)
199 KOG2068 MOT2 transcription fac 95.0 0.0077 1.7E-07 52.0 0.3 78 35-115 77-162 (327)
200 PF10567 Nab6_mRNP_bdg: RNA-re 94.7 2.2 4.8E-05 36.6 14.2 79 35-116 15-108 (309)
201 KOG2318 Uncharacterized conser 94.7 0.18 4E-06 46.8 8.3 82 32-114 171-306 (650)
202 PF04847 Calcipressin: Calcipr 94.3 0.16 3.5E-06 40.9 6.4 61 48-115 8-70 (184)
203 KOG4849 mRNA cleavage factor I 93.9 0.07 1.5E-06 46.4 3.7 75 37-114 82-161 (498)
204 KOG2591 c-Mpl binding protein, 93.8 0.12 2.5E-06 47.8 5.2 59 201-262 173-233 (684)
205 KOG0804 Cytoplasmic Zn-finger 93.7 0.63 1.4E-05 42.1 9.4 70 32-101 71-141 (493)
206 KOG2253 U1 snRNP complex, subu 93.7 0.11 2.4E-06 48.9 4.8 67 198-269 35-101 (668)
207 KOG2318 Uncharacterized conser 93.4 0.46 9.9E-06 44.3 8.3 78 202-280 173-306 (650)
208 PF11767 SET_assoc: Histone ly 93.1 0.45 9.7E-06 31.4 5.9 55 46-110 11-65 (66)
209 KOG2135 Proteins containing th 92.7 0.064 1.4E-06 48.4 1.9 73 35-115 372-445 (526)
210 PF03880 DbpA: DbpA RNA bindin 92.6 0.81 1.7E-05 30.9 6.8 58 46-113 12-74 (74)
211 KOG0804 Cytoplasmic Zn-finger 92.6 0.85 1.9E-05 41.3 8.6 78 203-280 74-154 (493)
212 PF11767 SET_assoc: Histone ly 90.4 1.1 2.5E-05 29.5 5.4 51 214-269 11-61 (66)
213 KOG2591 c-Mpl binding protein, 89.9 0.99 2.2E-05 41.9 6.4 56 35-95 175-232 (684)
214 KOG4285 Mitotic phosphoprotein 89.2 0.97 2.1E-05 38.8 5.5 67 38-114 200-266 (350)
215 KOG2135 Proteins containing th 86.0 0.5 1.1E-05 42.9 2.1 73 202-280 371-444 (526)
216 PF07292 NID: Nmi/IFP 35 domai 85.2 1.1 2.4E-05 31.4 3.1 23 202-224 51-73 (88)
217 KOG2891 Surface glycoprotein [ 84.5 0.5 1.1E-05 40.0 1.3 81 202-282 148-268 (445)
218 PF10567 Nab6_mRNP_bdg: RNA-re 84.0 2.2 4.8E-05 36.6 4.9 78 202-280 14-106 (309)
219 KOG2891 Surface glycoprotein [ 82.9 0.41 8.9E-06 40.5 0.2 69 33-101 147-248 (445)
220 KOG4019 Calcineurin-mediated s 81.9 1.6 3.5E-05 34.7 3.1 77 203-283 10-91 (193)
221 PF03468 XS: XS domain; Inter 79.5 2.8 6E-05 31.1 3.6 40 47-87 29-68 (116)
222 KOG4483 Uncharacterized conser 77.9 4.1 8.8E-05 36.5 4.6 56 35-94 391-446 (528)
223 KOG2295 C2H2 Zn-finger protein 74.0 0.56 1.2E-05 43.4 -1.6 66 202-267 230-299 (648)
224 KOG4410 5-formyltetrahydrofola 73.2 6.3 0.00014 33.7 4.4 48 36-86 331-378 (396)
225 COG5638 Uncharacterized conser 72.6 6 0.00013 35.6 4.3 79 202-281 145-297 (622)
226 KOG4410 5-formyltetrahydrofola 66.9 50 0.0011 28.4 8.4 49 203-252 330-378 (396)
227 PF03468 XS: XS domain; Inter 63.1 8.4 0.00018 28.5 2.9 47 206-252 11-67 (116)
228 PF07292 NID: Nmi/IFP 35 domai 61.5 2.5 5.3E-05 29.7 -0.2 27 31-57 48-74 (88)
229 KOG4019 Calcineurin-mediated s 61.4 7.9 0.00017 30.9 2.6 74 36-116 11-90 (193)
230 PF12355 Dscam_C: Down syndrom 59.7 12 0.00026 27.0 3.0 25 4-28 36-74 (124)
231 PF08544 GHMP_kinases_C: GHMP 57.2 45 0.00097 22.4 5.7 43 218-261 37-79 (85)
232 KOG4008 rRNA processing protei 56.2 10 0.00022 31.5 2.5 35 31-65 36-70 (261)
233 PF15513 DUF4651: Domain of un 56.1 25 0.00055 22.8 3.8 19 50-68 9-27 (62)
234 KOG1295 Nonsense-mediated deca 55.6 17 0.00037 32.5 3.9 71 35-105 7-82 (376)
235 PF14111 DUF4283: Domain of un 54.4 16 0.00035 28.0 3.3 36 204-239 105-141 (153)
236 PF11411 DNA_ligase_IV: DNA li 53.7 9.9 0.00022 21.7 1.5 16 46-61 20-35 (36)
237 cd04908 ACT_Bt0572_1 N-termina 53.5 57 0.0012 20.9 6.9 50 216-266 14-64 (66)
238 KOG4483 Uncharacterized conser 52.2 34 0.00074 30.9 5.2 55 203-260 391-446 (528)
239 PF14893 PNMA: PNMA 52.1 15 0.00032 32.7 3.0 75 32-115 15-96 (331)
240 PF00403 HMA: Heavy-metal-asso 51.3 59 0.0013 20.4 5.8 54 205-260 1-58 (62)
241 PF02714 DUF221: Domain of unk 49.8 24 0.00052 31.0 4.1 40 78-122 1-40 (325)
242 PRK11558 putative ssRNA endonu 48.3 29 0.00062 24.8 3.4 49 36-85 28-76 (97)
243 PF09707 Cas_Cas2CT1978: CRISP 46.4 38 0.00083 23.6 3.8 48 36-84 26-73 (86)
244 PF08544 GHMP_kinases_C: GHMP 43.7 90 0.0019 20.8 5.5 43 50-95 37-79 (85)
245 COG0150 PurM Phosphoribosylami 43.6 8.4 0.00018 34.0 0.2 49 216-264 274-322 (345)
246 PF00403 HMA: Heavy-metal-asso 41.9 87 0.0019 19.6 5.9 54 37-94 1-58 (62)
247 PF13820 Nucleic_acid_bd: Puta 41.4 52 0.0011 25.5 4.2 58 38-97 7-67 (149)
248 KOG4008 rRNA processing protei 41.4 23 0.00049 29.6 2.3 35 202-236 39-73 (261)
249 cd04889 ACT_PDH-BS-like C-term 41.2 83 0.0018 19.2 5.4 42 217-258 12-55 (56)
250 PRK11230 glycolate oxidase sub 40.9 95 0.002 29.4 6.8 62 202-263 188-256 (499)
251 KOG4213 RNA-binding protein La 40.6 35 0.00076 27.3 3.2 54 203-260 111-169 (205)
252 KOG4213 RNA-binding protein La 35.6 44 0.00096 26.7 3.0 57 34-94 110-169 (205)
253 cd04882 ACT_Bt0572_2 C-termina 35.0 1.1E+02 0.0025 18.9 5.6 48 217-265 13-63 (65)
254 cd01201 Neurobeachin Neurobeac 34.3 1.6E+02 0.0034 21.6 5.5 55 38-95 49-105 (108)
255 TIGR01873 cas_CT1978 CRISPR-as 34.2 75 0.0016 22.2 3.7 48 36-84 26-74 (87)
256 CHL00123 rps6 ribosomal protei 33.2 1.6E+02 0.0034 20.9 5.4 54 205-260 10-81 (97)
257 PF08734 GYD: GYD domain; Int 31.5 1.8E+02 0.004 20.3 5.6 46 217-262 22-68 (91)
258 PF08156 NOP5NT: NOP5NT (NUC12 30.4 17 0.00037 24.0 0.0 38 50-95 27-64 (67)
259 KOG2295 C2H2 Zn-finger protein 30.3 7.5 0.00016 36.4 -2.2 67 35-101 231-299 (648)
260 KOG1295 Nonsense-mediated deca 29.9 65 0.0014 28.9 3.5 66 204-269 8-80 (376)
261 PRK11901 hypothetical protein; 29.1 1.1E+02 0.0023 27.1 4.6 53 46-99 253-308 (327)
262 PF08248 Tryp_FSAP: Tryptophyl 29.0 37 0.0008 14.1 0.9 7 8-14 3-9 (12)
263 PF11823 DUF3343: Protein of u 28.5 70 0.0015 21.2 2.8 24 77-100 3-26 (73)
264 PF14026 DUF4242: Protein of u 28.3 1.9E+02 0.0042 19.5 8.5 62 38-100 3-71 (77)
265 KOG4365 Uncharacterized conser 26.1 9.7 0.00021 34.6 -2.2 74 203-280 3-80 (572)
266 KOG4092 Mitochondrial F1F0-ATP 26.0 48 0.001 23.4 1.6 31 1-47 13-43 (108)
267 PF14893 PNMA: PNMA 25.9 78 0.0017 28.1 3.3 72 202-279 17-94 (331)
268 PF15407 Spo7_2_N: Sporulation 25.5 25 0.00053 23.3 0.1 25 32-56 24-48 (67)
269 PF03875 Statherin: Statherin; 25.4 86 0.0019 18.0 2.3 10 6-15 19-28 (42)
270 PLN02805 D-lactate dehydrogena 25.1 2.5E+02 0.0053 27.1 6.8 61 202-262 264-332 (555)
271 KOG1134 Uncharacterized conser 24.8 99 0.0021 30.8 4.1 40 239-283 303-342 (728)
272 PF03439 Spt5-NGN: Early trans 24.1 1.6E+02 0.0034 20.2 4.0 37 229-266 33-69 (84)
273 PF04859 DUF641: Plant protein 23.8 27 0.00059 26.4 0.1 8 1-8 33-40 (131)
274 PF10206 WRW: Mitochondrial F1 23.3 97 0.0021 22.4 2.8 31 2-48 14-44 (104)
275 COG3254 Uncharacterized conser 22.8 3E+02 0.0066 19.9 5.4 42 50-92 27-68 (105)
276 PF11230 DUF3029: Protein of u 22.2 45 0.00097 30.8 1.1 57 2-59 43-125 (487)
277 COG0030 KsgA Dimethyladenosine 22.1 1.3E+02 0.0029 25.7 3.9 33 36-68 96-128 (259)
278 COG2608 CopZ Copper chaperone 21.6 2.5E+02 0.0054 18.4 4.8 46 203-250 3-48 (71)
279 PRK14548 50S ribosomal protein 21.2 2.9E+02 0.0063 19.1 5.3 56 206-261 23-81 (84)
280 cd04879 ACT_3PGDH-like ACT_3PG 20.7 2.2E+02 0.0048 17.5 4.7 56 206-262 2-60 (71)
281 TIGR00387 glcD glycolate oxida 20.7 2.9E+02 0.0063 25.3 6.2 62 202-263 130-199 (413)
282 PRK11230 glycolate oxidase sub 20.3 3.3E+02 0.0072 25.7 6.5 61 49-114 203-268 (499)
283 KOG2187 tRNA uracil-5-methyltr 20.2 88 0.0019 29.5 2.6 37 242-281 64-100 (534)
284 PRK08559 nusG transcription an 20.1 3.7E+02 0.0081 20.7 5.8 34 230-264 36-69 (153)
285 TIGR03636 L23_arch archaeal ri 20.0 3E+02 0.0064 18.7 5.4 56 206-261 16-74 (77)
No 1
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=222.90 Aligned_cols=270 Identities=53% Similarity=0.832 Sum_probs=188.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCee---EEEEEEcC
Q 023143 8 PYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVN 84 (286)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~---~aFV~F~~ 84 (286)
|.+.|..|..+++++++..--.....+.|||||.+||.++...+|+.+|..|-.-+.+.++++.++++. +|||.|.+
T Consensus 7 p~~s~~~~es~hsvs~~~~~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s 86 (284)
T KOG1457|consen 7 PFYSYQLHESPHSVSPQLPLLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTS 86 (284)
T ss_pred CccccccccCCCCCCcccccccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecc
Confidence 788888899998888765444444677899999999999999999999999999999999998888655 99999999
Q ss_pred HHHHHHHHHHhCCCccCCCCCCeEEEEEeecCCCCCcCCCCCC-----ceecccccccccccccCCCCCCCCCCCCCCCC
Q 023143 85 HQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGA-----YVVIDKRTKTEANVQESSSADGDSDTDEASPV 159 (286)
Q Consensus 85 ~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (286)
..+|..|+..|||..|++.++..|+|+++++|.+.++....++ ....+-.....++............+.+..+.
T Consensus 87 ~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~ 166 (284)
T KOG1457|consen 87 HQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEP 166 (284)
T ss_pred hHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCc
Confidence 9999999999999999999999999999999987766633331 11111111111110001111111111111111
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC
Q 023143 160 RNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG 239 (286)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~ 239 (286)
........+....+....+.....+...+......+.-.....+.||||.||..++||++|+.+|+.|.++..+++....
T Consensus 167 ~~a~al~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~ 246 (284)
T KOG1457|consen 167 GNADALKENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG 246 (284)
T ss_pred cccccCCCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC
Confidence 11111100100000000101111111111111122222334458999999999999999999999999999999999988
Q ss_pred CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 240 GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 240 ~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+...|||+|++.+.|..||..|+|+.|-.+|+..++|+
T Consensus 247 g~~vaf~~~~~~~~at~am~~lqg~~~s~~drgg~~ie 284 (284)
T KOG1457|consen 247 GMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 284 (284)
T ss_pred CcceEeecHHHHHHHHHHHHHhhcceeccccCCCcccC
Confidence 88899999999999999999999999998888888874
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.7e-32 Score=242.89 Aligned_cols=245 Identities=18% Similarity=0.259 Sum_probs=150.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+..+|||+|||.++++++|+++|+.||.|.+|+|..+. ...++||||+|.+.++|.+|++.|+|..|. |+.|+|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~---g~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ---NKTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC---CeeEEEE
Confidence 46789999999999999999999999999999998542 224569999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCC---------------------CCCC----ceecccccccccc---------------cccCCCCCC--
Q 023143 112 LARSNSRKKRKP---------------------GSGA----YVVIDKRTKTEAN---------------VQESSSADG-- 149 (286)
Q Consensus 112 ~~~~~~~~~~~~---------------------~~~~----~~~~~~~~~~~~~---------------~~~~~~~~~-- 149 (286)
|++......... .-+. .+..+......++ .....+...
T Consensus 79 ~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 79 YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred eecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 986443211100 0000 0000100000000 000000000
Q ss_pred --------CCCCCC----------------CCCCC-CCC--------CCCCC---CC-CCCCcccc----------CCC-
Q 023143 150 --------DSDTDE----------------ASPVR-NID--------SADKG---DF-VTTQSERA----------TDS- 181 (286)
Q Consensus 150 --------~~~~~~----------------~~~~~-~~~--------~~~~~---~~-~~p~~~~~----------~~~- 181 (286)
+..... ..... ... ..... .. ..+..... ..+
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 000000 00000 000 00000 00 00000000 000
Q ss_pred ---CCCCC-ccccC-----CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEE
Q 023143 182 ---GNAVA-PINEQ-----SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADF 248 (286)
Q Consensus 182 ---~~~~~-~~~~~-----~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f 248 (286)
....+ ..... ...........+.+|||+|||.++++++|+++|++||.|.+|+++. +.++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 00000 00000 0000001112356899999999999999999999999999999986 55789999999
Q ss_pred CCHHHHHHHHHhcCCCccCCCCCCcEEEEEeccccC
Q 023143 249 EEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMR 284 (286)
Q Consensus 249 ~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~~~ 284 (286)
.+.++|.+||+.|||..+. |+.|+|+|+.++..
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~---gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLG---NRVLQVSFKTNKAY 351 (352)
T ss_pred CCHHHHHHHHHHhCCCEEC---CeEEEEEEccCCCC
Confidence 9999999999999999999 55999999988754
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.9e-32 Score=240.90 Aligned_cols=166 Identities=23% Similarity=0.321 Sum_probs=142.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++|||+|||+++|+++|+++|+.||.|.+|+|..+.. ..++||||+|.++++|.+|++.|+|..+. +++|+|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~---gr~i~V 181 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR---NKRLKV 181 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC---Cceeee
Confidence 3568999999999999999999999999999999975422 23459999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.|++... .
T Consensus 182 ~~a~p~~----~-------------------------------------------------------------------- 189 (346)
T TIGR01659 182 SYARPGG----E-------------------------------------------------------------------- 189 (346)
T ss_pred ecccccc----c--------------------------------------------------------------------
Confidence 8864210 0
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
....++|||+|||.++|+++|+++|++||.|..|+++. +++++||||+|.+.++|++||+.|||..+
T Consensus 190 ---------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 190 ---------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ---------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 00245799999999999999999999999999999886 34568999999999999999999999999
Q ss_pred CCCCCCcEEEEEecccc
Q 023143 267 PSSDRGGMHIEYARSKM 283 (286)
Q Consensus 267 ~~~~g~~l~V~~ak~~~ 283 (286)
.+. ++.|+|.||+.+.
T Consensus 261 ~g~-~~~l~V~~a~~~~ 276 (346)
T TIGR01659 261 EGG-SQPLTVRLAEEHG 276 (346)
T ss_pred CCC-ceeEEEEECCccc
Confidence 755 5699999998653
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=5.4e-30 Score=236.89 Aligned_cols=202 Identities=20% Similarity=0.279 Sum_probs=147.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..++++|||+|||. .+|+++|+++|+.||.|..|++....++ ||||+|.+.++|.+|++.|||..|. |++|+|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g---~afV~f~~~~~A~~Ai~~lng~~l~---g~~l~v 345 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKE---TALIEMADPYQAQLALTHLNGVKLF---GKPLRV 345 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CceEEE
Confidence 45778999999998 6999999999999999999999855444 9999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.+++.......+ .+... +.... .... +. ........+
T Consensus 346 ~~s~~~~~~~~~--~~~~~--~~~~~--------~~d~--~~------------~~~~r~~~~----------------- 382 (481)
T TIGR01649 346 CPSKQQNVQPPR--EGQLD--DGLTS--------YKDY--SS------------SRNHRFKKP----------------- 382 (481)
T ss_pred EEcccccccCCC--CCcCc--CCCcc--------cccc--cC------------CccccCCCc-----------------
Confidence 987654321111 00000 00000 0000 00 000000000
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCC--ceEEEEeec--CCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPG--FNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~--v~~v~~~~~--~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
.........+++.+|||+|||.++++++|+++|+.||. |..+++... ..+++|||+|.+.++|.+||..|||..|
T Consensus 383 -~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 383 -GSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred -ccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 00011122457999999999999999999999999998 888888663 2457999999999999999999999999
Q ss_pred CCCCCC---cEEEEEecccc
Q 023143 267 PSSDRG---GMHIEYARSKM 283 (286)
Q Consensus 267 ~~~~g~---~l~V~~ak~~~ 283 (286)
.++.+. .|+|+||+++.
T Consensus 462 ~~~~~~~~~~lkv~fs~~~~ 481 (481)
T TIGR01649 462 NEPNGSAPYHLKVSFSTSRI 481 (481)
T ss_pred CCCCCCccceEEEEeccCCC
Confidence 855111 49999999763
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.3e-31 Score=226.12 Aligned_cols=230 Identities=22% Similarity=0.249 Sum_probs=159.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.-.+.|||+.||.++.|++|..+|++.|+|-+++|.++ +..+++||||.|.+.+.|++|++.||+.+|. .|+.|.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir--~GK~igv 158 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR--PGKLLGV 158 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc--CCCEeEE
Confidence 45889999999999999999999999999999999866 3334669999999999999999999999997 6899999
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCC----C---------------CCCCCCCC-CCCCCCCCCCCCCCCC
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESS----S---------------ADGDSDTD-EASPVRNIDSADKGDF 170 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---------------~~~~~~~~-~~~~~~~~~~~~~~~~ 170 (286)
+.+..|...-.. .+.+.+.+..-..+.. + ..+|.... +++.... ..+..
T Consensus 159 c~Svan~RLFiG-------~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa---~aRrK- 227 (506)
T KOG0117|consen 159 CVSVANCRLFIG-------NIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAA---MARRK- 227 (506)
T ss_pred EEeeecceeEec-------cCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHH---HHHhh-
Confidence 988766533221 0111111111100000 0 00000000 0000000 00000
Q ss_pred CCCCccccCCCCCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECC
Q 023143 171 VTTQSERATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 250 (286)
Q Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~ 250 (286)
-.+..-...........+........+ ....-+.|||+||+.++|||.|+.+|+.||.|++|+.+++ ||||.|.+
T Consensus 228 l~~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~e 302 (506)
T KOG0117|consen 228 LMPGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAE 302 (506)
T ss_pred ccCCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecc
Confidence 122222333344444444443333333 2334899999999999999999999999999999988744 79999999
Q ss_pred HHHHHHHHHhcCCCccCCCCCCcEEEEEecccc
Q 023143 251 VEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283 (286)
Q Consensus 251 ~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~~ 283 (286)
+++|.+||+.|||++|. |..|.|++||..-
T Consensus 303 R~davkAm~~~ngkeld---G~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 303 REDAVKAMKETNGKELD---GSPIEVTLAKPVD 332 (506)
T ss_pred hHHHHHHHHHhcCceec---CceEEEEecCChh
Confidence 99999999999999999 5599999999654
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.3e-30 Score=239.14 Aligned_cols=175 Identities=13% Similarity=0.225 Sum_probs=142.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++|||+|||+++++++|+++|+.||.|.+|++..+. ...++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~---GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe---cceeee
Confidence 456899999999999999999999999999999997542 223459999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.+...... ... . . .
T Consensus 182 ~rp~~~p~-a~~-----------------~----~-~------------------------------------------- 195 (612)
T TIGR01645 182 GRPSNMPQ-AQP-----------------I----I-D------------------------------------------- 195 (612)
T ss_pred cccccccc-ccc-----------------c----c-c-------------------------------------------
Confidence 84221100 000 0 0 0
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
.........++|||+||+.++++++|+++|+.||.|.+|++.+ ++++|||||+|.+.++|.+|++.|||+.+
T Consensus 196 ----~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el 271 (612)
T TIGR01645 196 ----MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL 271 (612)
T ss_pred ----cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee
Confidence 0000011357899999999999999999999999999999987 35788999999999999999999999999
Q ss_pred CCCCCCcEEEEEecccc
Q 023143 267 PSSDRGGMHIEYARSKM 283 (286)
Q Consensus 267 ~~~~g~~l~V~~ak~~~ 283 (286)
+ |+.|+|.++..+.
T Consensus 272 g---Gr~LrV~kAi~pP 285 (612)
T TIGR01645 272 G---GQYLRVGKCVTPP 285 (612)
T ss_pred C---CeEEEEEecCCCc
Confidence 9 5599999988654
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2.6e-30 Score=209.76 Aligned_cols=175 Identities=16% Similarity=0.260 Sum_probs=145.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
=-|||+.|...++-++|++.|.+||+|.+++|+.+ ....++|+||.|.+.++|++||..|+|.=|. +|.|+..|+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG---~R~IRTNWA 139 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG---RRTIRTNWA 139 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec---cceeecccc
Confidence 34999999999999999999999999999999833 2223459999999999999999999999997 899999999
Q ss_pred ecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCC
Q 023143 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSE 193 (286)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (286)
..+...... . . ...++.
T Consensus 140 TRKp~e~n~----~---------~-ltfdeV------------------------------------------------- 156 (321)
T KOG0148|consen 140 TRKPSEMNG----K---------P-LTFDEV------------------------------------------------- 156 (321)
T ss_pred ccCccccCC----C---------C-ccHHHH-------------------------------------------------
Confidence 765411000 0 0 000000
Q ss_pred CCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 194 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 194 ~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
.....+.+++|||+||+..+||++|+..|++||.|.+|++.+.+ ||+||+|++.|.|.+||..|||.+|. |+.
T Consensus 157 --~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv~mNntei~---G~~ 229 (321)
T KOG0148|consen 157 --YNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIVQMNNTEIG---GQL 229 (321)
T ss_pred --hccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHHHhcCceeC---ceE
Confidence 00112359999999999999999999999999999999999988 99999999999999999999999999 669
Q ss_pred EEEEEecccc
Q 023143 274 MHIEYARSKM 283 (286)
Q Consensus 274 l~V~~ak~~~ 283 (286)
++++|+|...
T Consensus 230 VkCsWGKe~~ 239 (321)
T KOG0148|consen 230 VRCSWGKEGD 239 (321)
T ss_pred EEEeccccCC
Confidence 9999999753
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=2.2e-29 Score=232.79 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=141.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh--CCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL--NGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l--~g~~~~~~~g~~l~v~ 111 (286)
++++|||+|||+++++++|+++|++||.|.+|.+. ..++ ||||+|.+.++|.+|++.+ ++..+. |++|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~-~~k~---~afVef~~~e~A~~Ai~~~~~~~~~l~---g~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML-PGKR---QALVEFEDEESAKACVNFATSVPIYIR---GQPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE-CCCC---EEEEEeCchHHHHHHHHHhhcCCceEc---CeEEEEE
Confidence 48999999999999999999999999999999887 3444 9999999999999999975 678887 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
|+...... +. .. ... .
T Consensus 74 ~s~~~~~~-~~-~~--------------------~~~---------~--------------------------------- 89 (481)
T TIGR01649 74 YSTSQEIK-RD-GN--------------------SDF---------D--------------------------------- 89 (481)
T ss_pred ecCCcccc-cC-CC--------------------Ccc---------c---------------------------------
Confidence 98643211 00 00 000 0
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
........+|||+||+..+|+++|+++|+.||.|.+|.+.++.++++|||+|.+.++|.+|++.|||..|.+. +
T Consensus 90 -----~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~ 163 (481)
T TIGR01649 90 -----SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-C 163 (481)
T ss_pred -----CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-c
Confidence 0000024579999999999999999999999999999998877667999999999999999999999999754 5
Q ss_pred CcEEEEEeccc
Q 023143 272 GGMHIEYARSK 282 (286)
Q Consensus 272 ~~l~V~~ak~~ 282 (286)
+.|+|+|+|..
T Consensus 164 ~~l~v~~sk~~ 174 (481)
T TIGR01649 164 CTLKIEYAKPT 174 (481)
T ss_pred eEEEEEEecCC
Confidence 69999999864
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.2e-28 Score=227.33 Aligned_cols=233 Identities=19% Similarity=0.197 Sum_probs=142.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
...++|||+|||.+++|++|+++|+.||.|.+|+|.++..+ .++||||+|.+.++|.+||+.||+..+. .|+.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~--~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR--PGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec--CCcccccc
Confidence 34689999999999999999999999999999998865222 3459999999999999999999999884 25666666
Q ss_pred EeecCCCCCcCCCCCC---ceecc---cc-----------cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023143 112 LARSNSRKKRKPGSGA---YVVID---KR-----------TKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQ 174 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~---~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (286)
++..+...-....... ....+ +. .........-.....+....+... ... .+ ...
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~--Air-----kL-~~g 205 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAM--ARR-----KL-MPG 205 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHH--HHH-----Hh-hcc
Confidence 5543221111100000 00000 00 000000000000000000000000 000 00 000
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcC--CCceEEEEeecCCccEEEEEECCHH
Q 023143 175 SERATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVY--PGFNMLKMRARGGMPVAFADFEEVE 252 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~--G~v~~v~~~~~~~~~~afV~f~~~e 252 (286)
.............+.... ..........++|||+||+.++++++|+++|+.| |.|++|++++ +||||+|.+.+
T Consensus 206 ki~l~Gr~I~VdwA~p~~-~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e 280 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEE-EVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDRE 280 (578)
T ss_pred ceEecCceEEEEeecccc-cccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHH
Confidence 000000000000000000 0001112346899999999999999999999999 9999998763 58999999999
Q ss_pred HHHHHHHhcCCCccCCCCCCcEEEEEecccc
Q 023143 253 QASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283 (286)
Q Consensus 253 ~A~~Al~~lng~~~~~~~g~~l~V~~ak~~~ 283 (286)
+|.+|++.|||..|. |+.|+|+||+.+.
T Consensus 281 ~A~kAi~~lnG~~i~---Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 281 DAVKAMDELNGKELE---GSEIEVTLAKPVD 308 (578)
T ss_pred HHHHHHHHhCCCEEC---CEEEEEEEccCCC
Confidence 999999999999999 5599999998753
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=2e-28 Score=226.17 Aligned_cols=175 Identities=21% Similarity=0.328 Sum_probs=141.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||..+++++|+++|+.||.|..|+++.+.. ..++||||+|.+.++|.+||. |+|..+. |++|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~---g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL---GRPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC---CeeeE
Confidence 44678999999999999999999999999999999985422 235599999999999999996 9999998 99999
Q ss_pred EEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccc
Q 023143 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (286)
Q Consensus 110 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (286)
|+++......... ....
T Consensus 162 v~~~~~~~~~~~~----------------------~~~~----------------------------------------- 178 (457)
T TIGR01622 162 VQSSQAEKNRAAK----------------------AATH----------------------------------------- 178 (457)
T ss_pred Eeecchhhhhhhh----------------------cccc-----------------------------------------
Confidence 9865321100000 0000
Q ss_pred cCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCc
Q 023143 190 EQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDST 265 (286)
Q Consensus 190 ~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~ 265 (286)
.....+..++|||+|||..+++++|+++|+.||.|..|.+.. +.++|||||+|.+.++|.+|++.|||..
T Consensus 179 ------~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~ 252 (457)
T TIGR01622 179 ------QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFE 252 (457)
T ss_pred ------cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcE
Confidence 000012378899999999999999999999999999999986 3567899999999999999999999999
Q ss_pred cCCCCCCcEEEEEeccc
Q 023143 266 LPSSDRGGMHIEYARSK 282 (286)
Q Consensus 266 ~~~~~g~~l~V~~ak~~ 282 (286)
|. |+.|+|+||.+.
T Consensus 253 i~---g~~i~v~~a~~~ 266 (457)
T TIGR01622 253 LA---GRPIKVGYAQDS 266 (457)
T ss_pred EC---CEEEEEEEccCC
Confidence 98 559999998743
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=4.1e-28 Score=229.22 Aligned_cols=161 Identities=19% Similarity=0.246 Sum_probs=137.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
+|||+|||.++||++|+++|+.||.|.+|+|..+.. ...+||||+|.+.++|.+|++.+++..+. |++|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~---gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG---GKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeeEEeeccc
Confidence 699999999999999999999999999999975432 23459999999999999999999999998 9999999864
Q ss_pred cCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCC
Q 023143 115 SNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEK 194 (286)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (286)
.+.... .
T Consensus 79 ~~~~~~-~------------------------------------------------------------------------ 85 (562)
T TIGR01628 79 RDPSLR-R------------------------------------------------------------------------ 85 (562)
T ss_pred cccccc-c------------------------------------------------------------------------
Confidence 321000 0
Q ss_pred CCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 195 PYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 195 ~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
....+|||+|||.++++++|+++|+.||.|..|++.. ++++|||||+|.+.++|.+|++.|||..+.++
T Consensus 86 ------~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~-- 157 (562)
T TIGR01628 86 ------SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK-- 157 (562)
T ss_pred ------cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc--
Confidence 0145699999999999999999999999999999877 45789999999999999999999999999944
Q ss_pred CcEEEEEeccc
Q 023143 272 GGMHIEYARSK 282 (286)
Q Consensus 272 ~~l~V~~ak~~ 282 (286)
.|.|...+.+
T Consensus 158 -~i~v~~~~~~ 167 (562)
T TIGR01628 158 -EVYVGRFIKK 167 (562)
T ss_pred -eEEEeccccc
Confidence 9998776544
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.4e-27 Score=221.77 Aligned_cols=191 Identities=16% Similarity=0.250 Sum_probs=135.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcC------------CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRK------------PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (286)
.......++|||+|||+.+|+++|+++|+.+ +.|..+.+. ..++ ||||+|.+.++|..|| .|+
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-~~kg---~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-KEKN---FAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-CCCC---EEEEEeCCHHHHhhhh-cCC
Confidence 3446678999999999999999999999975 233333333 3344 9999999999999999 599
Q ss_pred CCccCCCCCCeEEEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 023143 97 GVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSE 176 (286)
Q Consensus 97 g~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 176 (286)
|..|. |+.|.|............ .. . .... ..... .....
T Consensus 244 g~~~~---g~~l~v~r~~~~~~~~~~----~~-----------~---~~~~-----------~~~~~--------~~~~~ 283 (509)
T TIGR01642 244 SIIYS---NVFLKIRRPHDYIPVPQI----TP-----------E---VSQK-----------NPDDN--------AKNVE 283 (509)
T ss_pred CeEee---CceeEecCccccCCcccc----CC-----------C---CCCC-----------CCccc--------ccccc
Confidence 99998 999988643221100000 00 0 0000 00000 00000
Q ss_pred ccCCCCCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHH
Q 023143 177 RATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVE 252 (286)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e 252 (286)
. ...........++|||+|||..+++++|+++|+.||.|..+.++. +.++|||||+|.+.+
T Consensus 284 ~---------------~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~ 348 (509)
T TIGR01642 284 K---------------LVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPS 348 (509)
T ss_pred c---------------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHH
Confidence 0 000011112478899999999999999999999999999999876 557899999999999
Q ss_pred HHHHHHHhcCCCccCCCCCCcEEEEEeccc
Q 023143 253 QASIAMEGLQDSTLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 253 ~A~~Al~~lng~~~~~~~g~~l~V~~ak~~ 282 (286)
+|..|++.|||..|. |+.|.|.+|...
T Consensus 349 ~a~~A~~~l~g~~~~---~~~l~v~~a~~~ 375 (509)
T TIGR01642 349 VTDVAIAALNGKDTG---DNKLHVQRACVG 375 (509)
T ss_pred HHHHHHHHcCCCEEC---CeEEEEEECccC
Confidence 999999999999999 559999998643
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.3e-27 Score=224.12 Aligned_cols=185 Identities=20% Similarity=0.286 Sum_probs=142.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCC-CCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQ-SGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~-~g~~l~v 110 (286)
...++|||+|||.++|+++|+++|+.||.|.++.+..+..+ .++||||+|.+.++|.+|++.++|..+... .|+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34578999999999999999999999999999988754332 344999999999999999999999998311 2667777
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.++......... .+.... ...
T Consensus 256 ~~a~~k~er~~~------------~~~~~~--~~~--------------------------------------------- 276 (562)
T TIGR01628 256 GRAQKRAEREAE------------LRRKFE--ELQ--------------------------------------------- 276 (562)
T ss_pred ecccChhhhHHH------------HHhhHH--hhh---------------------------------------------
Confidence 665432211000 000000 000
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
........+++|||+||+.++++++|+++|++||.|.+|+++. +.++|||||+|.+.++|.+|++.|||..++
T Consensus 277 ----~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~ 352 (562)
T TIGR01628 277 ----QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG 352 (562)
T ss_pred ----hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC
Confidence 0000012377899999999999999999999999999999987 567899999999999999999999999999
Q ss_pred CCCCCcEEEEEecccc
Q 023143 268 SSDRGGMHIEYARSKM 283 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~~ 283 (286)
|+.|.|.||+.+.
T Consensus 353 ---gk~l~V~~a~~k~ 365 (562)
T TIGR01628 353 ---GKPLYVALAQRKE 365 (562)
T ss_pred ---CceeEEEeccCcH
Confidence 5599999998764
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=205.61 Aligned_cols=172 Identities=18% Similarity=0.276 Sum_probs=146.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.+.-.+||+-+|..++|.||+++|++||.|.+|.|+.+. +-.++||||.|.+.++|.+|+..|+.....|+-..++.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 344569999999999999999999999999999887332 233459999999999999999999988887888899999
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.|++......
T Consensus 112 k~Ad~E~er~---------------------------------------------------------------------- 121 (510)
T KOG0144|consen 112 KYADGERERI---------------------------------------------------------------------- 121 (510)
T ss_pred cccchhhhcc----------------------------------------------------------------------
Confidence 9886532111
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCcc-
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTL- 266 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~- 266 (286)
...+.|||+-|++.+||.|++++|++||.|++|.|.+ +.+||||||.|.+.|-|..||++|||..-
T Consensus 122 ----------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm 191 (510)
T KOG0144|consen 122 ----------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM 191 (510)
T ss_pred ----------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceee
Confidence 1255699999999999999999999999999999988 77899999999999999999999999754
Q ss_pred CCCCCCcEEEEEeccccCC
Q 023143 267 PSSDRGGMHIEYARSKMRK 285 (286)
Q Consensus 267 ~~~~g~~l~V~~ak~~~~~ 285 (286)
.+. ..+|.|.||..+..|
T Consensus 192 eGc-s~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 192 EGC-SQPLVVKFADTQKDK 209 (510)
T ss_pred ccC-CCceEEEecccCCCc
Confidence 533 459999999887655
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.9e-25 Score=206.22 Aligned_cols=239 Identities=17% Similarity=0.245 Sum_probs=146.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..++|||+|||..+++++|+++|+.||.|..|.+.....+ .++||||+|.+.++|.+|++.|+|..|. |++|.|.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~---g~~i~v~ 261 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA---GRPIKVG 261 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC---CEEEEEE
Confidence 3789999999999999999999999999999988854332 3459999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccc-----cc---ccc---CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTE-----AN---VQE---SSSAD-GDSDTDEASPVRNIDSADKGDFVTTQSERAT 179 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 179 (286)
|+......... .......+...... .. ... ..... ....+........+....+.+... ...+..
T Consensus 262 ~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 338 (457)
T TIGR01622 262 YAQDSTYLLDA--ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIID-PNIPSR 338 (457)
T ss_pred EccCCCccccc--hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccc-cccccc
Confidence 98632111100 00000000000000 00 000 00000 000000000000000000000000 000000
Q ss_pred CCCCCCCccccCCCCCCCCCCCCccEEEEccCCCCCC----------HHHHHHHHhcCCCceEEEEeecCCccEEEEEEC
Q 023143 180 DSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCT----------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFE 249 (286)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~t----------e~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~ 249 (286)
...........+..........++++|+|.||....+ .+||++.|++||.|..|.+......|++||+|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~ 418 (457)
T TIGR01622 339 YATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFS 418 (457)
T ss_pred ccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEEC
Confidence 0000000001111111111334689999999975544 378999999999999999987777799999999
Q ss_pred CHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 250 EVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 250 ~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
++++|.+|++.|||..|+ |+.|.++|.-.
T Consensus 419 ~~e~A~~A~~~lnGr~f~---gr~i~~~~~~~ 447 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFG---GKMITAAFVVN 447 (457)
T ss_pred CHHHHHHHHHHhcCcccC---CeEEEEEEEcH
Confidence 999999999999999999 55999999653
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=7.3e-26 Score=211.78 Aligned_cols=190 Identities=16% Similarity=0.212 Sum_probs=139.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
.++.++|||+|||..+++++|+++|+.||.|..+.+.... ...++||||+|.+.++|..|++.|+|..|. |+.|.
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~---~~~l~ 368 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG---DNKLH 368 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 3456899999999999999999999999999999887432 224569999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccc
Q 023143 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (286)
Q Consensus 110 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (286)
|+++............ .... ..... ... . ..
T Consensus 369 v~~a~~~~~~~~~~~~-------------------~~~~---~~~~~--~~~--------~---------~~-------- 399 (509)
T TIGR01642 369 VQRACVGANQATIDTS-------------------NGMA---PVTLL--AKA--------L---------SQ-------- 399 (509)
T ss_pred EEECccCCCCCCcccc-------------------cccc---ccccc--ccc--------c---------hh--------
Confidence 9998653221111000 0000 00000 000 0 00
Q ss_pred cCCCCCCCCCCCCccEEEEccCCCC--C--------CHHHHHHHHhcCCCceEEEEeec-------CCccEEEEEECCHH
Q 023143 190 EQSEKPYEGGVQPCSTLFIANLGPN--C--------TEDELKQTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVE 252 (286)
Q Consensus 190 ~~~~~~~~~~~~~~~~L~v~NL~~~--~--------te~~L~~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e 252 (286)
........++.+|+|.||... + ..++|+++|++||.|..|.|.+. .+.|+|||+|.+++
T Consensus 400 ----~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e 475 (509)
T TIGR01642 400 ----SILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVR 475 (509)
T ss_pred ----hhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHH
Confidence 000011236889999999742 1 23689999999999999999752 34689999999999
Q ss_pred HHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 253 QASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 253 ~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
+|.+|+.+|||..|. |+.|.|+|.-
T Consensus 476 ~A~~A~~~lnGr~~~---gr~v~~~~~~ 500 (509)
T TIGR01642 476 SAEKAMEGMNGRKFN---DRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHcCCCEEC---CeEEEEEEeC
Confidence 999999999999999 5599999964
No 17
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=179.33 Aligned_cols=211 Identities=23% Similarity=0.346 Sum_probs=159.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 33 NGINTLFVSGLPDDVRAREIHN----LFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
.++.||||+||...+..++|+. +|+.||.|..|... .+..-+|.|||.|.+.+.|..|++.|+|..+. |++|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~-kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy---gK~m 82 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF-KTPKMRGQAFVVFKETEAASAALRALQGFPFY---GKPM 82 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec-CCCCccCceEEEecChhHHHHHHHHhcCCccc---Cchh
Confidence 4567999999999999999987 99999999888777 33444559999999999999999999999999 9999
Q ss_pred EEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcc
Q 023143 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (286)
Q Consensus 109 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (286)
+|+|++++++...+ ..+..+..++.....+.......... .......... ..+..
T Consensus 83 riqyA~s~sdii~~-~~~~~v~~~~k~~~~~~~~~~~~~~~---------ng~~~~~~~~---------------~~p~p 137 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQ-APGTFVEKEKKINGEILARIKQPLDT---------NGHFYNMNRM---------------NLPPP 137 (221)
T ss_pred heecccCccchhhc-cCceeccccCccccccccccCCcccc---------cccccccccc---------------cCCCC
Confidence 99999999888777 34455544443332222111100000 0000000000 00000
Q ss_pred ccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 189 NEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
. .....+|+.+||+.|||..++.+.|..+|++|++.+.++++... ++.|||+|.+...|..|..+++|..|.-
T Consensus 138 -----~-~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 138 -----F-LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred -----c-cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceecc
Confidence 0 13446789999999999999999999999999999999999965 2799999999999999999999999962
Q ss_pred CCCCcEEEEEecc
Q 023143 269 SDRGGMHIEYARS 281 (286)
Q Consensus 269 ~~g~~l~V~~ak~ 281 (286)
.+.++|+||+.
T Consensus 211 --~~~m~i~~a~K 221 (221)
T KOG4206|consen 211 --KNTMQITFAKK 221 (221)
T ss_pred --CceEEecccCC
Confidence 45999999873
No 18
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=6.3e-27 Score=191.89 Aligned_cols=150 Identities=25% Similarity=0.503 Sum_probs=138.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeecC
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSN 116 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~~ 116 (286)
.|||+|||..+++.+|+.+|++||.|.+|.|+ +| ||||...+...|+.|++.|+|..|+ |..|+|+-++++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KN---YgFVHiEdktaaedairNLhgYtLh---g~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIV---KN---YGFVHIEDKTAAEDAIRNLHGYTLH---GVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeee---cc---cceEEeecccccHHHHhhcccceec---ceEEEEEecccc
Confidence 59999999999999999999999999999999 77 9999999999999999999999999 999999965543
Q ss_pred CCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCCC
Q 023143 117 SRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKPY 196 (286)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 196 (286)
+ +
T Consensus 75 s----k-------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 75 S----K-------------------------------------------------------------------------- 76 (346)
T ss_pred C----C--------------------------------------------------------------------------
Confidence 1 1
Q ss_pred CCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 197 EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 197 ~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+++|+|+||.+.++.+||+..|++||.|.++++.++. +||.|+-.++|..|++.|||.++. |++|+|
T Consensus 77 -----~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy----~fvh~d~~eda~~air~l~~~~~~---gk~m~v 144 (346)
T KOG0109|consen 77 -----ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDY----AFVHFDRAEDAVEAIRGLDNTEFQ---GKRMHV 144 (346)
T ss_pred -----CccccccCCCCccccCHHHhhhhcccCCceeeeeecce----eEEEEeeccchHHHHhcccccccc---cceeee
Confidence 37779999999999999999999999999999999875 999999999999999999999999 559999
Q ss_pred EEeccccCC
Q 023143 277 EYARSKMRK 285 (286)
Q Consensus 277 ~~ak~~~~~ 285 (286)
+.+.++++.
T Consensus 145 q~stsrlrt 153 (346)
T KOG0109|consen 145 QLSTSRLRT 153 (346)
T ss_pred eeecccccc
Confidence 999988763
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.8e-25 Score=179.64 Aligned_cols=244 Identities=17% Similarity=0.248 Sum_probs=154.3
Q ss_pred CCCCe-EEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 33 NGINT-LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 33 ~~~~~-lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
++++| |.|.-||..+|+|+|+.+|+..|+|++|+++.+.-. .-+|+||.|.+++||++|+..|||..+. .+.|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cceEE
Confidence 45544 999999999999999999999999999999844222 2239999999999999999999999999 99999
Q ss_pred EEEeecCCCCCcCCC----------------------------------------CCCceecccccccccccccCCCCCC
Q 023143 110 IELARSNSRKKRKPG----------------------------------------SGAYVVIDKRTKTEANVQESSSADG 149 (286)
Q Consensus 110 v~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (286)
|.|++..++..+... .-.++.+|+.....+.-....+...
T Consensus 115 VSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 115 VSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred EEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 999997654433210 0011112222111111000111000
Q ss_pred CCCCCCCC---------CCC------CCCCCCCCCCCCCCccccCCC-------CCCCCccccCC------CCCCCCC--
Q 023143 150 DSDTDEAS---------PVR------NIDSADKGDFVTTQSERATDS-------GNAVAPINEQS------EKPYEGG-- 199 (286)
Q Consensus 150 ~~~~~~~~---------~~~------~~~~~~~~~~~~p~~~~~~~~-------~~~~~~~~~~~------~~~~~~~-- 199 (286)
+...|+- +.. ....+...+..-|........ ......+.++. +......
T Consensus 195 -~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~ 273 (360)
T KOG0145|consen 195 -SGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPG 273 (360)
T ss_pred -CCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCC
Confidence 0000000 000 000000001111110000000 00000011111 1111111
Q ss_pred -CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcE
Q 023143 200 -VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 274 (286)
Q Consensus 200 -~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l 274 (286)
...+=+|||.||..+.+|.-|..+|++||.|..|++++ ++.||||||.+.+-++|.-||..|||..++++ .|
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r---vL 350 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR---VL 350 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce---EE
Confidence 11267899999999999999999999999999999988 66789999999999999999999999999966 99
Q ss_pred EEEEecccc
Q 023143 275 HIEYARSKM 283 (286)
Q Consensus 275 ~V~~ak~~~ 283 (286)
+|+|..++.
T Consensus 351 QVsFKtnk~ 359 (360)
T KOG0145|consen 351 QVSFKTNKA 359 (360)
T ss_pred EEEEecCCC
Confidence 999977653
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.7e-25 Score=197.22 Aligned_cols=238 Identities=20% Similarity=0.235 Sum_probs=144.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCe-eEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ-VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~-~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
--+|.|+|||+.|...+|+.+|+.||.|.+|.|.....++. |||||+|....+|..||+.+||..|. ||++.|.|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~---gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID---GRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec---CceeEEeee
Confidence 45699999999999999999999999999999883333322 39999999999999999999999999 999999999
Q ss_pred ecCCCCCcCCCCCCceecccccccccccccCCCCCCC------C-CCCCCCCCCCCCCCCCC--CCCCC---CccccCCC
Q 023143 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGD------S-DTDEASPVRNIDSADKG--DFVTT---QSERATDS 181 (286)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~--~~~~p---~~~~~~~~ 181 (286)
......... .........+... ...........+. + ...+......++.-... ....- .-+...++
T Consensus 194 V~Kd~ye~t-a~~~~~s~Kk~~~-eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S 271 (678)
T KOG0127|consen 194 VDKDTYEDT-AHEEKQSLKKAVK-EEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESS 271 (678)
T ss_pred ccccccccc-chhhhhhhhhccc-hhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccc
Confidence 865433221 0000000000000 0000000000000 0 00000000000000000 00000 00000000
Q ss_pred CCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHH
Q 023143 182 GNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIA 257 (286)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A 257 (286)
...++..... .........-+.||||+|||+++|+++|.+.|++||.|.++.++. +.++|+|||.|.+..+|+.|
T Consensus 272 ~~~~~~k~~q-~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~c 350 (678)
T KOG0127|consen 272 GKKESDKKAQ-NKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNC 350 (678)
T ss_pred ccCcccchhc-cccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHH
Confidence 0000000000 000111122369999999999999999999999999999998876 77889999999999999999
Q ss_pred HHhc-----CC-CccCCCCCCcEEEEEecc
Q 023143 258 MEGL-----QD-STLPSSDRGGMHIEYARS 281 (286)
Q Consensus 258 l~~l-----ng-~~~~~~~g~~l~V~~ak~ 281 (286)
|++. .| ..+. |+.|+|..|-.
T Consensus 351 i~~Aspa~e~g~~ll~---GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 351 IEAASPASEDGSVLLD---GRLLKVTLAVT 377 (678)
T ss_pred HHhcCccCCCceEEEe---ccEEeeeeccc
Confidence 9986 33 4555 67999988754
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=1.5e-25 Score=172.25 Aligned_cols=166 Identities=22% Similarity=0.298 Sum_probs=138.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
+.+...||||+||+..++++.|+++|-..|+|.++++.-. ....++||||+|.++++|.-|++-|++..++ |++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---grpI 81 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---GRPI 81 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---Ccee
Confidence 4567789999999999999999999999999999987621 1223559999999999999999999999999 9999
Q ss_pred EEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcc
Q 023143 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (286)
Q Consensus 109 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (286)
+|.-+.. .. ..
T Consensus 82 rv~kas~--~~-~n------------------------------------------------------------------ 92 (203)
T KOG0131|consen 82 RVNKASA--HQ-KN------------------------------------------------------------------ 92 (203)
T ss_pred EEEeccc--cc-cc------------------------------------------------------------------
Confidence 9986541 00 00
Q ss_pred ccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEE-EEee----cCCccEEEEEECCHHHHHHHHHhcCC
Q 023143 189 NEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNML-KMRA----RGGMPVAFADFEEVEQASIAMEGLQD 263 (286)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v-~~~~----~~~~~~afV~f~~~e~A~~Al~~lng 263 (286)
..-+.+|||+||++.++|.-|.++|+.||.+... ++++ +.+++||||.|++.|.+.+|+..|||
T Consensus 93 -----------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 93 -----------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred -----------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 0125679999999999999999999999987642 2222 56778999999999999999999999
Q ss_pred CccCCCCCCcEEEEEeccc
Q 023143 264 STLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 264 ~~~~~~~g~~l~V~~ak~~ 282 (286)
.-+..+ ++.|+|++.+
T Consensus 162 q~l~nr---~itv~ya~k~ 177 (203)
T KOG0131|consen 162 QYLCNR---PITVSYAFKK 177 (203)
T ss_pred chhcCC---ceEEEEEEec
Confidence 999966 9999999865
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=190.69 Aligned_cols=87 Identities=24% Similarity=0.322 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC-CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG-RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.+.+.|||+-|+..+||.+++++|++||-|++|.|.... +-.++||||+|.+.+.|..||+.|||.....+|..+|.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 356789999999999999999999999999999998432 1234499999999999999999999998888999999999
Q ss_pred EeecCCCC
Q 023143 112 LARSNSRK 119 (286)
Q Consensus 112 ~~~~~~~~ 119 (286)
|+++..+.
T Consensus 202 FADtqkdk 209 (510)
T KOG0144|consen 202 FADTQKDK 209 (510)
T ss_pred ecccCCCc
Confidence 99876533
No 23
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=175.57 Aligned_cols=246 Identities=17% Similarity=0.191 Sum_probs=155.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC-CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG-RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
+.+.|||+-|...-.|||++.+|..||.|++|.+.... ...++||||.|.+.-+|..||..|+|....++...-|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 67889999999999999999999999999999888322 22445999999999999999999999998888899999999
Q ss_pred eecCCCCCcCCC----------------C----------------------CCce-------------------------
Q 023143 113 ARSNSRKKRKPG----------------S----------------------GAYV------------------------- 129 (286)
Q Consensus 113 ~~~~~~~~~~~~----------------~----------------------~~~~------------------------- 129 (286)
+++.......+. - +.+.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 985431110000 0 0000
Q ss_pred ecccccccccc----cccC------CCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC--------------cc---
Q 023143 130 VIDKRTKTEAN----VQES------SSADGDSDTDE------ASPVRNIDSADKGDFVTTQ--------------SE--- 176 (286)
Q Consensus 130 ~~~~~~~~~~~----~~~~------~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~--------------~~--- 176 (286)
+.-+....... .... -+..+++.... .....-.+........+|. +.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00000000000 0000 00000000000 0000000000000000000 00
Q ss_pred ccCCCCCCCCccccCC-CCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCH
Q 023143 177 RATDSGNAVAPINEQS-EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEV 251 (286)
Q Consensus 177 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~ 251 (286)
++..........+.+. ........|.+++|||..||....+.||..+|-.||.|.+.++.. +.+|.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0000000111111111 112244567799999999999999999999999999999888765 67889999999999
Q ss_pred HHHHHHHHhcCCCccCCCCCCcEEEEEeccc
Q 023143 252 EQASIAMEGLQDSTLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 252 e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~ 282 (286)
.+|+.||.+|||+.|+-| +|+|++.|.|
T Consensus 338 ~SaQaAIqAMNGFQIGMK---RLKVQLKRPk 365 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMK---RLKVQLKRPK 365 (371)
T ss_pred hhHHHHHHHhcchhhhhh---hhhhhhcCcc
Confidence 999999999999999988 9999987754
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4e-24 Score=188.70 Aligned_cols=187 Identities=21% Similarity=0.292 Sum_probs=142.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
..||||++||++++.++|.++||.+|+|..+.+.-... -.++|+||+|.-.+++.+|++.+.+..+. |+.|+|.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~---Gr~l~v~~ 81 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE---GRILNVDP 81 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc---ceeccccc
Confidence 38999999999999999999999999999888772211 13449999999999999999999999999 99999999
Q ss_pred eecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCC
Q 023143 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQS 192 (286)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (286)
+......... ..+......+..++. .|.
T Consensus 82 A~~R~r~e~~-~~~e~~~veK~~~q~---------------------------------~~~------------------ 109 (678)
T KOG0127|consen 82 AKKRARSEEV-EKGENKAVEKPIEQK---------------------------------RPT------------------ 109 (678)
T ss_pred ccccccchhc-ccccchhhhcccccC---------------------------------Ccc------------------
Confidence 8754332211 001000000000000 000
Q ss_pred CCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 193 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 193 ~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
......+--.|.|+|||+.+...+|+.+|+.||.|..|.|++ ++-.|||||+|.+..+|.+||+.|||.+|+
T Consensus 110 ---k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~-- 184 (678)
T KOG0127|consen 110 ---KAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID-- 184 (678)
T ss_pred ---hhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec--
Confidence 000011355699999999999999999999999999999987 334479999999999999999999999999
Q ss_pred CCCcEEEEEeccc
Q 023143 270 DRGGMHIEYARSK 282 (286)
Q Consensus 270 ~g~~l~V~~ak~~ 282 (286)
|++|-|.||-++
T Consensus 185 -gR~VAVDWAV~K 196 (678)
T KOG0127|consen 185 -GRPVAVDWAVDK 196 (678)
T ss_pred -CceeEEeeeccc
Confidence 669999998654
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=1.3e-23 Score=190.81 Aligned_cols=167 Identities=20% Similarity=0.342 Sum_probs=140.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-----CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-----NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-----~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+|||.||++++|.++|..+|+..|.|.++.|....++ ..|||||+|.++++|..|++.|+|..|+ |..|.|+
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld---GH~l~lk 593 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD---GHKLELK 593 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec---CceEEEE
Confidence 3999999999999999999999999999988744322 1259999999999999999999999999 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++. +...... +..
T Consensus 594 ~S~-~k~~~~~---gK~--------------------------------------------------------------- 606 (725)
T KOG0110|consen 594 ISE-NKPASTV---GKK--------------------------------------------------------------- 606 (725)
T ss_pred ecc-Ccccccc---ccc---------------------------------------------------------------
Confidence 987 1111000 000
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
......++.|+|+|||+..+..+++.||+.||.|..|+++.. .++|||||+|-++.+|..|+.+|.+.-+.
T Consensus 607 -----~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly 681 (725)
T KOG0110|consen 607 -----KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY 681 (725)
T ss_pred -----cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee
Confidence 000113788999999999999999999999999999999873 35789999999999999999999999999
Q ss_pred CCCCCcEEEEEecc
Q 023143 268 SSDRGGMHIEYARS 281 (286)
Q Consensus 268 ~~~g~~l~V~~ak~ 281 (286)
|+.|-++||++
T Consensus 682 ---GRrLVLEwA~~ 692 (725)
T KOG0110|consen 682 ---GRRLVLEWAKS 692 (725)
T ss_pred ---chhhheehhcc
Confidence 56999999986
No 26
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=6e-22 Score=175.40 Aligned_cols=150 Identities=22% Similarity=0.259 Sum_probs=134.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeec
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~ 115 (286)
..|||+ +++||..|++.|+++|.|.+|++..+. +.-+||||.|.++++|.+||..+|...+. |++++|-|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~---~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLK---GKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccC---CcEEEeehhcc
Confidence 358999 899999999999999999999998666 56669999999999999999999999998 99999998754
Q ss_pred CCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCC
Q 023143 116 NSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKP 195 (286)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (286)
+.
T Consensus 75 d~------------------------------------------------------------------------------ 76 (369)
T KOG0123|consen 75 DP------------------------------------------------------------------------------ 76 (369)
T ss_pred CC------------------------------------------------------------------------------
Confidence 21
Q ss_pred CCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 196 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 196 ~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
+.|||+||+.+++..+|.++|+.||.|.+|++.. ..++|| ||+|++.++|.+|++.+||..+.++ .
T Consensus 77 --------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---k 144 (369)
T KOG0123|consen 77 --------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---K 144 (369)
T ss_pred --------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---e
Confidence 1199999999999999999999999999999988 447789 9999999999999999999999955 8
Q ss_pred EEEEEeccc
Q 023143 274 MHIEYARSK 282 (286)
Q Consensus 274 l~V~~ak~~ 282 (286)
|.|.....+
T Consensus 145 i~vg~~~~~ 153 (369)
T KOG0123|consen 145 IYVGLFERK 153 (369)
T ss_pred eEEeeccch
Confidence 888766554
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.7e-21 Score=172.52 Aligned_cols=166 Identities=20% Similarity=0.373 Sum_probs=142.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeecCC
Q 023143 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNS 117 (286)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~~~ 117 (286)
|||.||+.+++..+|+++|+.||.|.+|++..+..+.++| ||+|.+.+.|.+|++.+||..+. |+++.|.......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~---~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN---GKKIYVGLFERKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC---CCeeEEeeccchh
Confidence 9999999999999999999999999999999887777879 99999999999999999999998 9999998765432
Q ss_pred CCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCCCC
Q 023143 118 RKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKPYE 197 (286)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 197 (286)
....... .
T Consensus 155 er~~~~~------------------------------------------------------------------------~ 162 (369)
T KOG0123|consen 155 EREAPLG------------------------------------------------------------------------E 162 (369)
T ss_pred hhccccc------------------------------------------------------------------------c
Confidence 2221100 0
Q ss_pred CCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcE
Q 023143 198 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 274 (286)
Q Consensus 198 ~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l 274 (286)
....-+.++|.|++.++++++|.++|+.||.|..+.++. +.+++|+||.|.++++|..|++.|||..++++ .+
T Consensus 163 -~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~---~~ 238 (369)
T KOG0123|consen 163 -YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK---EL 238 (369)
T ss_pred -hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCcc---ce
Confidence 011356789999999999999999999999999999988 55678999999999999999999999999955 88
Q ss_pred EEEEecccc
Q 023143 275 HIEYARSKM 283 (286)
Q Consensus 275 ~V~~ak~~~ 283 (286)
.|.-+..+.
T Consensus 239 ~V~~aqkk~ 247 (369)
T KOG0123|consen 239 YVGRAQKKS 247 (369)
T ss_pred eecccccch
Confidence 888776644
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.87 E-value=5.8e-20 Score=170.35 Aligned_cols=82 Identities=21% Similarity=0.357 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++|||+|||.++++++|+++|+.||.|.+|++..+. +..++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg---Gr~LrV 278 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYLRV 278 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC---CeEEEE
Confidence 356799999999999999999999999999999998542 224559999999999999999999999998 999999
Q ss_pred EEeecCC
Q 023143 111 ELARSNS 117 (286)
Q Consensus 111 ~~~~~~~ 117 (286)
.++....
T Consensus 279 ~kAi~pP 285 (612)
T TIGR01645 279 GKCVTPP 285 (612)
T ss_pred EecCCCc
Confidence 9987543
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=1.1e-21 Score=173.99 Aligned_cols=233 Identities=15% Similarity=0.169 Sum_probs=142.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.+...|||+||.+.+++++|+.+|++||.|+.|.+.++. .-.++|+||+|.+.++|++|++.|||.+|. |+.|+|
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA---Gr~ikV 352 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA---GRLIKV 352 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec---CceEEE
Confidence 345559999999999999999999999999999988663 223459999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCCceecccc--ccc---ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKR--TKT---EANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAV 185 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (286)
.......+.... . ...-..|.. ... ..+..+..... .+.........+..+.....+.+.+.......
T Consensus 353 ~~v~~r~~~~~a-~-~~~~d~D~~d~~gl~~~~~g~~Ql~~kl-----a~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 425 (549)
T KOG0147|consen 353 SVVTERVDTKEA-A-VTQFDFDEDDRQGLSLGSGGRNQLMAKL-----AEGKGRSLPSTAISALLLLAKLASAAQFNGVV 425 (549)
T ss_pred EEeeeecccccc-c-ccccccchhhccccccccccHHHHHHHH-----hccCCccccchhhhHHHhccccchHHhhcCCc
Confidence 876543332211 0 000000000 000 00000000000 00000000000000001111111111100000
Q ss_pred -CccccCCCCCCCCCCCCccEEEEccCCCCCCH----------HHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHH
Q 023143 186 -APINEQSEKPYEGGVQPCSTLFIANLGPNCTE----------DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQA 254 (286)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te----------~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A 254 (286)
.....+... ....++++.+|.++||-...|| +|+.+-|++||+|.+|.+-++ +.||.||.|.+.+.|
T Consensus 426 ~~~~~~p~~~-~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-s~g~VYvrc~s~~~A 503 (549)
T KOG0147|consen 426 RVRSVDPADA-SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-SAGCVYVRCPSAEAA 503 (549)
T ss_pred CccccCcccc-ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-CCceEEEecCcHHHH
Confidence 000000000 1111257889999999754443 789999999999999877664 349999999999999
Q ss_pred HHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 255 SIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 255 ~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
..|+.+|||++|. |+.|...|-.
T Consensus 504 ~~a~~alhgrWF~---gr~Ita~~~~ 526 (549)
T KOG0147|consen 504 GTAVKALHGRWFA---GRMITAKYLP 526 (549)
T ss_pred HHHHHHHhhhhhc---cceeEEEEee
Confidence 9999999999999 5599988843
No 30
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=5.6e-21 Score=161.53 Aligned_cols=173 Identities=15% Similarity=0.280 Sum_probs=138.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
.++|||+.+++.+.||.|+..|.+||+|.+|.+-++. ...++||||+|.-+|.|..|++.|||..+. ||.|+|..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG---GRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc---CccccccC
Confidence 4789999999999999999999999999999888653 223449999999999999999999999998 99999883
Q ss_pred eecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCC
Q 023143 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQS 192 (286)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (286)
. +|...... ..|.....
T Consensus 190 P-sNmpQAQp-------iID~vqee------------------------------------------------------- 206 (544)
T KOG0124|consen 190 P-SNMPQAQP-------IIDMVQEE------------------------------------------------------- 206 (544)
T ss_pred C-CCCcccch-------HHHHHHHH-------------------------------------------------------
Confidence 2 22221111 00000000
Q ss_pred CCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 193 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 193 ~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
...-.+|||..+.++.+|+||++.|+.||.|.+|++-+ ...+||+|++|.+..+-..|+..||=+.++
T Consensus 207 -------Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG- 278 (544)
T KOG0124|consen 207 -------AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG- 278 (544)
T ss_pred -------HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc-
Confidence 01246699999999999999999999999999999987 456789999999999999999999999888
Q ss_pred CCCCcEEEEEecccc
Q 023143 269 SDRGGMHIEYARSKM 283 (286)
Q Consensus 269 ~~g~~l~V~~ak~~~ 283 (286)
|.-|+|.-+-...
T Consensus 279 --GQyLRVGk~vTPP 291 (544)
T KOG0124|consen 279 --GQYLRVGKCVTPP 291 (544)
T ss_pred --cceEecccccCCC
Confidence 5588887665543
No 31
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=7e-19 Score=150.83 Aligned_cols=194 Identities=21% Similarity=0.305 Sum_probs=147.0
Q ss_pred CCeEEEcCCCCC-CCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 35 INTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 35 ~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
+.+|.|.||... +|.+.|..+|+.||.|.+|+|....+. .|.|++.+...|..|++.|+|..|+ |++|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd---~ALIQmsd~~qAqLA~~hL~g~~l~---gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD---NALIQMSDGQQAQLAMEHLEGHKLY---GKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc---ceeeeecchhHHHHHHHHhhcceec---CceEEEeec
Confidence 688999999854 899999999999999999999965554 9999999999999999999999999 999999998
Q ss_pred ecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCC
Q 023143 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSE 193 (286)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (286)
+-..-.... .+..+ .+. .....+..+ ..-..+..
T Consensus 371 KH~~vqlp~--egq~d---------------~gl---T~dy~~spL--------------------------hrfkkpgs 404 (492)
T KOG1190|consen 371 KHTNVQLPR--EGQED---------------QGL---TKDYGNSPL--------------------------HRFKKPGS 404 (492)
T ss_pred cCccccCCC--CCCcc---------------ccc---cccCCCCch--------------------------hhccCccc
Confidence 754322111 11100 000 000000000 00011112
Q ss_pred CCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 194 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 194 ~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
....+..||+.+|.+.|+|.+++||+|+++|..-|...+....-.+.+.+|++.+.++|+|..|+..+++..+++ ++.
T Consensus 405 KN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lge--n~h 482 (492)
T KOG1190|consen 405 KNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGE--NHH 482 (492)
T ss_pred ccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCC--Cce
Confidence 244455678999999999999999999999999998765555555566899999999999999999999999872 459
Q ss_pred EEEEEeccc
Q 023143 274 MHIEYARSK 282 (286)
Q Consensus 274 l~V~~ak~~ 282 (286)
|+|+|+|+.
T Consensus 483 lRvSFSks~ 491 (492)
T KOG1190|consen 483 LRVSFSKST 491 (492)
T ss_pred EEEEeeccc
Confidence 999999975
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1.4e-18 Score=134.20 Aligned_cols=182 Identities=20% Similarity=0.319 Sum_probs=133.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+..+++|||+|||.++.+.+|.++|.+||.|..|.++.. ++.-+||||+|.++.+|..||.--+|..++ |..|+|+
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r-~g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLRVE 78 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR-PGPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLRVE 78 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC-CCCCCeeEEEecCccchhhhhhcccccccC---cceEEEE
Confidence 456789999999999999999999999999999999843 333459999999999999999999999999 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
+++....... ..+.+. ..... + ....+. . .++.
T Consensus 79 fprggr~s~~--~~G~y~------gggrg-----G------------------gg~gg~-----------r-gpps---- 111 (241)
T KOG0105|consen 79 FPRGGRSSSD--RRGSYS------GGGRG-----G------------------GGGGGR-----------R-GPPS---- 111 (241)
T ss_pred eccCCCcccc--cccccC------CCCCC-----C------------------CCCCcc-----------c-CCcc----
Confidence 9986531111 111000 00000 0 000000 0 0000
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
-..--.+.|++||.+-+.+||++....-|.|-...+.++ +++.|+|...|+-.=|+..|....+... |
T Consensus 112 --------rrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~se-G 179 (241)
T KOG0105|consen 112 --------RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRSE-G 179 (241)
T ss_pred --------cccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccCc-C
Confidence 012345889999999999999999999999977777665 4799999999999999999988887765 4
Q ss_pred CcEEE
Q 023143 272 GGMHI 276 (286)
Q Consensus 272 ~~l~V 276 (286)
-...|
T Consensus 180 e~~yi 184 (241)
T KOG0105|consen 180 ETAYI 184 (241)
T ss_pred cEeeE
Confidence 44333
No 33
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.82 E-value=2.6e-19 Score=163.01 Aligned_cols=208 Identities=21% Similarity=0.272 Sum_probs=140.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
...+.|+|+|||..+..++|..+|..||+|..|.+. ... ..|.|+|.++.+|.+|++.|....+. ..++.++|
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G---~~aiv~fl~p~eAr~Afrklaysr~k---~~plyle~ 455 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGG---TGAIVEFLNPLEARKAFRKLAYSRFK---SAPLYLEW 455 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecC-ccc---ceeeeeecCccchHHHHHHhchhhhc---cCcccccc
Confidence 345789999999999999999999999999988333 222 27999999999999999999999998 99999999
Q ss_pred eecCCCCCcCCCCCCceecccccccccccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQES-SSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
+......... ..... .............+. .... ..+... .......
T Consensus 456 aP~dvf~~~p-ka~~~-~~e~~~~~ee~~~Er~s~~d--------~~v~eD------------------~d~te~s---- 503 (725)
T KOG0110|consen 456 APEDVFTEDP-KADDL-SAESRSKMEENPSERVSAED--------GQVEED------------------KDPTEES---- 503 (725)
T ss_pred ChhhhccCCc-ccccc-ccccccccccCcceeccccc--------cccccc------------------CCccccc----
Confidence 8765433111 10000 000000000000000 0000 000000 0000000
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC-------CccEEEEEECCHHHHHHHHHhcCCC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-------GMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~-------~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
+...........++|||+||+++.|.++|...|+..|.|..+.|...+ +.|||||+|.+.++|+.|+..|+|.
T Consensus 504 s~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 504 SLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred cchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 000000111112339999999999999999999999999999887632 4599999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeccc
Q 023143 265 TLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 265 ~~~~~~g~~l~V~~ak~~ 282 (286)
.+. |+.|.|+++.++
T Consensus 584 vld---GH~l~lk~S~~k 598 (725)
T KOG0110|consen 584 VLD---GHKLELKISENK 598 (725)
T ss_pred eec---CceEEEEeccCc
Confidence 999 669999999833
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.6e-19 Score=147.19 Aligned_cols=139 Identities=18% Similarity=0.280 Sum_probs=114.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.+++-|||||+||+.++||+-|-.||+..|.|..+++++. .|+|
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------------e~~v 45 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------------ELKV 45 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh------------------------------------hhcc
Confidence 3567799999999999999999999999999999988843 2345
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.|+... ....+ ..
T Consensus 46 ~wa~~p-~nQsk--~t---------------------------------------------------------------- 58 (321)
T KOG0148|consen 46 NWATAP-GNQSK--PT---------------------------------------------------------------- 58 (321)
T ss_pred ccccCc-ccCCC--Cc----------------------------------------------------------------
Confidence 554432 11101 00
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
....--+||+-|...++.|+|++.|.+||+|.++++++ +++|||+||.|.+.++|+.||..|||.+|
T Consensus 59 ---------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 59 ---------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred ---------cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 00144599999999999999999999999999999988 78899999999999999999999999999
Q ss_pred CCCCCCcEEEEEeccccC
Q 023143 267 PSSDRGGMHIEYARSKMR 284 (286)
Q Consensus 267 ~~~~g~~l~V~~ak~~~~ 284 (286)
+ +|.|+-.||..|..
T Consensus 130 G---~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 130 G---RRTIRTNWATRKPS 144 (321)
T ss_pred c---cceeeccccccCcc
Confidence 9 66999999987753
No 35
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.80 E-value=2.2e-17 Score=140.26 Aligned_cols=234 Identities=13% Similarity=0.113 Sum_probs=154.9
Q ss_pred CCCCCeEEEcCCC--CCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLP--DDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp--~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
+.+++.|.+.=|. +.+|.|.|+.++.+.|.|.+|.|. +.+...|.|+|.+.+.|++|.+.|||..|+ .....|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIf---kkngVQAmVEFdsv~~AqrAk~alNGADIY-sGCCTLK 192 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIF---KKNGVQAMVEFDSVEVAQRAKAALNGADIY-SGCCTLK 192 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEE---eccceeeEEeechhHHHHHHHhhccccccc-ccceeEE
Confidence 4567777666554 679999999999999999999888 334559999999999999999999999994 5458999
Q ss_pred EEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCccccC
Q 023143 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKG----------DFVTTQSERAT 179 (286)
Q Consensus 110 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~p~~~~~~ 179 (286)
|+|++...-...+...++++-..+..+..-... .....++..+............... ..+.|......
T Consensus 193 IeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g-~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~ 271 (494)
T KOG1456|consen 193 IEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPG-RNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDG 271 (494)
T ss_pred EEecCcceeeeeecCCccccccCCCCCCCCCCC-CCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccc
Confidence 999997765555544444432222221111100 0001111111111111111110000 11111111111
Q ss_pred CCCCCCCccccCCCCCCCCCCCCccEEEEccCCC-CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHH
Q 023143 180 DSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAM 258 (286)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al 258 (286)
.... . +........++.++.|.+|+. .++.+.|.++|..||.|.+|++++.+. +.|.|++.+..+.++|+
T Consensus 272 ~~~~---~-----g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-gtamVemgd~~aver~v 342 (494)
T KOG1456|consen 272 YRDG---R-----GYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-GTAMVEMGDAYAVERAV 342 (494)
T ss_pred cccC---C-----CCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-ceeEEEcCcHHHHHHHH
Confidence 1100 0 011113445799999999996 888999999999999999999999552 79999999999999999
Q ss_pred HhcCCCccCCCCCCcEEEEEeccc
Q 023143 259 EGLQDSTLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 259 ~~lng~~~~~~~g~~l~V~~ak~~ 282 (286)
..||+..+. |.+|.|.++|..
T Consensus 343 ~hLnn~~lf---G~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 343 THLNNIPLF---GGKLNVCVSKQN 363 (494)
T ss_pred HHhccCccc---cceEEEeecccc
Confidence 999999999 558888888754
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.79 E-value=9.1e-18 Score=144.04 Aligned_cols=223 Identities=15% Similarity=0.120 Sum_probs=143.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
..-+++|.|+-+.++.|.|..+|++||.|..|...- +++.=.|.|+|.+.++|..|...|+|+.| +...+.|+|.|+
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~--Knn~FQALvQy~d~~sAq~AK~aLdGqnI-yngcCtLrId~S 225 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT--KNNGFQALVQYTDAVSAQAAKLALDGQNI-YNGCCTLRIDFS 225 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe--cccchhhhhhccchhhHHHHHHhccCCcc-cCceeEEEeehh
Confidence 335689999999999999999999999998765542 22222899999999999999999999999 666789999988
Q ss_pred ecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCC
Q 023143 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSE 193 (286)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (286)
+-..-...- ..++++.-... ....+.+.+.....+.....+ ....+. .+..-+....... .
T Consensus 226 klt~LnvKy-------nndkSRDyTnp----~LP~gd~~p~l~~~~~aa~~~---~~~~~g-~p~aip~~~~~a~----~ 286 (492)
T KOG1190|consen 226 KLTDLNVKY-------NNDKSRDYTNP----DLPVGDGQPSLDQLMAAAFGS---VPAVHG-APLAIPSGAAGAN----A 286 (492)
T ss_pred hcccceeec-------cccccccccCC----CCCCCccccccchhhhccccc---cccccC-CcccCCccchhhc----c
Confidence 743211111 00011100000 000001111111111111000 000011 0000000000000 0
Q ss_pred CCCCCCCC-CccEEEEccCCC-CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 194 KPYEGGVQ-PCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 194 ~~~~~~~~-~~~~L~v~NL~~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
.......+ .+.+|.|.||.. .+|.+-|..+|+-||+|.+|+|..++. .-|.|+|.+...|+-|++.|+|.++.|+
T Consensus 287 a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk-- 363 (492)
T KOG1190|consen 287 ADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGK-- 363 (492)
T ss_pred cccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCc--
Confidence 00111111 168889999885 899999999999999999999999663 6899999999999999999999999955
Q ss_pred CcEEEEEeccc
Q 023143 272 GGMHIEYARSK 282 (286)
Q Consensus 272 ~~l~V~~ak~~ 282 (286)
.|+|.|+|-.
T Consensus 364 -~lrvt~SKH~ 373 (492)
T KOG1190|consen 364 -KLRVTLSKHT 373 (492)
T ss_pred -eEEEeeccCc
Confidence 9999998853
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.78 E-value=2.8e-19 Score=158.81 Aligned_cols=176 Identities=18% Similarity=0.278 Sum_probs=138.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
+..-+|||+--|+-..+..+|.++|+.+|.|..|+++.+. +..++.|||+|.+.++...|+ .|.|..+. |-+|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---g~pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---GVPVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc---CceeE
Confidence 5566999999999999999999999999999999998432 224559999999999999999 69999998 99999
Q ss_pred EEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccc
Q 023143 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (286)
Q Consensus 110 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (286)
|+...... .... ..+ ...
T Consensus 252 vq~sEaek-nr~a-~~s------------------~a~------------------------------------------ 269 (549)
T KOG0147|consen 252 VQLSEAEK-NRAA-NAS------------------PAL------------------------------------------ 269 (549)
T ss_pred ecccHHHH-HHHH-hcc------------------ccc------------------------------------------
Confidence 98543210 0000 000 000
Q ss_pred cCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCc
Q 023143 190 EQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDST 265 (286)
Q Consensus 190 ~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~ 265 (286)
......-|-..|||+||..++++++|+.+|++||.|..|.+.. ++++|||||+|.+.++|.+|++.|||++
T Consensus 270 -----~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfe 344 (549)
T KOG0147|consen 270 -----QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFE 344 (549)
T ss_pred -----cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccce
Confidence 0000011233399999999999999999999999999998876 6788999999999999999999999999
Q ss_pred cCCCCCCcEEEEEecc
Q 023143 266 LPSSDRGGMHIEYARS 281 (286)
Q Consensus 266 ~~~~~g~~l~V~~ak~ 281 (286)
+- |+.|+|+..-.
T Consensus 345 lA---Gr~ikV~~v~~ 357 (549)
T KOG0147|consen 345 LA---GRLIKVSVVTE 357 (549)
T ss_pred ec---CceEEEEEeee
Confidence 99 66999987544
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=1.3e-17 Score=129.37 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=72.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.+++|||+||+.++++++|+++|++||.|.+++++. +++++||||+|.+.++|++|++.|||..|. |+.|+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~---Gr~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN---GRHIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEE
Confidence 478899999999999999999999999999999986 457899999999999999999999999999 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
|++.+.
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 998765
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.71 E-value=7.9e-16 Score=129.74 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=134.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCcc------EEEEEecC---CCCeeEEEEEEcCHHHHHHHHHHhCCCccCC
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFD------FCQLKYTG---RGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~------~v~i~~~~---~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (286)
..-+..|||+|||.++|.+++.++|+.+|.|. ..++++.. ...+|=|.|.|...++...|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r- 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR- 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc-
Confidence 34456699999999999999999999999982 22444321 113338999999999999999999999998
Q ss_pred CCCCeEEEEEeecCCCCCcCCCCCCceecccccccccccccCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 023143 103 QSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSA-DGDSDTDEASPVRNIDSADKGDFVTTQSERATDS 181 (286)
Q Consensus 103 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 181 (286)
|+.|+|+.|+........ ... .. .......++....... ..+... .
T Consensus 210 --g~~~rVerAkfq~Kge~~-~~~-k~--k~k~~~~kk~~k~q~k~~dw~pd---------------------~------ 256 (382)
T KOG1548|consen 210 --GKKLRVERAKFQMKGEYD-ASK-KE--KGKCKDKKKLKKQQQKLLDWRPD---------------------R------ 256 (382)
T ss_pred --CcEEEEehhhhhhccCcC-ccc-cc--ccccccHHHHHHHHHhhcccCCC---------------------c------
Confidence 999999998865432211 000 00 0011111111111100 000000 0
Q ss_pred CCCCCccccCCCCCCCCCCCCccEEEEccCCC----CCC-------HHHHHHHHhcCCCceEEEEeecCCccEEEEEECC
Q 023143 182 GNAVAPINEQSEKPYEGGVQPCSTLFIANLGP----NCT-------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 250 (286)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~----~~t-------e~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~ 250 (286)
.........+||.|+||-. ..+ .++|++-+++||.|.+|.+......|.+-|.|.+
T Consensus 257 -------------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n 323 (382)
T KOG1548|consen 257 -------------DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRN 323 (382)
T ss_pred -------------cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCC
Confidence 0000111378888999872 333 3677778999999999999876667899999999
Q ss_pred HHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 251 VEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 251 ~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.++|+.||+.|+|+.+. |+.|.-+.
T Consensus 324 ~eeA~~ciq~m~GR~fd---gRql~A~i 348 (382)
T KOG1548|consen 324 NEEADQCIQTMDGRWFD---GRQLTASI 348 (382)
T ss_pred hHHHHHHHHHhcCeeec---ceEEEEEE
Confidence 99999999999999999 55877654
No 40
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=3.4e-17 Score=132.35 Aligned_cols=166 Identities=25% Similarity=0.405 Sum_probs=128.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeec
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~ 115 (286)
..|||++||+.+.+.+|..+|..||.|..|.++ .+ |+||+|.+..+|..|+..+||..|. |..+.++|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~g---f~fv~fed~rda~Dav~~l~~~~l~---~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NG---FGFVEFEDPRDADDAVHDLDGKELC---GERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cc---cceeccCchhhhhcccchhcCceec---ceeeeeecccc
Confidence 469999999999999999999999999999888 44 9999999999999999999999997 77788888875
Q ss_pred CCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCC
Q 023143 116 NSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKP 195 (286)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (286)
.......+..+ ...+ +. ..
T Consensus 73 ~~~~~g~~~~g---------------------~r~~------------~~----------------------------~~ 91 (216)
T KOG0106|consen 73 KRRGRGRPRGG---------------------DRRS------------DS----------------------------RR 91 (216)
T ss_pred cccccCCCCCC---------------------Cccc------------hh----------------------------hc
Confidence 43221110000 0000 00 00
Q ss_pred CCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 196 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 196 ~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
........+.|+|.|+...+.+.+|.+.|+.+|.+..+.. ..+++||+|.+.++|.+|++.|+|..+. ++.|.
T Consensus 92 ~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~---~~~l~ 164 (216)
T KOG0106|consen 92 YRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLN---GRRIS 164 (216)
T ss_pred cCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhc---Cceee
Confidence 0000112677899999999999999999999999966655 3357999999999999999999999999 44887
Q ss_pred EEE
Q 023143 276 IEY 278 (286)
Q Consensus 276 V~~ 278 (286)
+.+
T Consensus 165 ~~~ 167 (216)
T KOG0106|consen 165 VEK 167 (216)
T ss_pred ecc
Confidence 743
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=2.5e-16 Score=122.08 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
...+++|||+|||++++|++|+++|++||.|.+|++..+.. ..++||||+|.+.++|.+|++.|++..|. |+.|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~---Gr~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN---GRHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 55678899999999999999999999999999999985532 23459999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|+++...
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998654
No 42
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.69 E-value=2.8e-15 Score=129.89 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=137.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-cCCCccEEEEEecCCCC-eeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFR-RKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..+.+||.|+|+++.|++|+++|. +.|+|+.|.++++..++ ++||.|+|+++|.+++|++.||..++. ||+|.|.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~---GR~l~vK 119 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN---GRELVVK 119 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc---CceEEEe
Confidence 346699999999999999999996 67999999999775543 339999999999999999999999998 9999997
Q ss_pred EeecCCCCCc----CCCCCC-------ceeccccccc---------------ccccccCCCCCCCCCCCCCCCCCCCCCC
Q 023143 112 LARSNSRKKR----KPGSGA-------YVVIDKRTKT---------------EANVQESSSADGDSDTDEASPVRNIDSA 165 (286)
Q Consensus 112 ~~~~~~~~~~----~~~~~~-------~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (286)
-.+....... ....+. ..-....... .+......+...++...+......+
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~l--- 196 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNL--- 196 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhc---
Confidence 4332110000 000000 0000000000 0000000000000000000000000
Q ss_pred CCCCCCCCCccccCCCCCCCCccccCCCCCC--CCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCC
Q 023143 166 DKGDFVTTQSERATDSGNAVAPINEQSEKPY--EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGG 240 (286)
Q Consensus 166 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~ 240 (286)
.........+ .-..|-...+||.||...+....|++.|.--|.|+.+.+.- +.+
T Consensus 197 ---------------------fgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s 255 (608)
T KOG4212|consen 197 ---------------------FGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNS 255 (608)
T ss_pred ---------------------ccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccccc
Confidence 0000000000 01123477899999999999999999999999999888755 667
Q ss_pred ccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 241 MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 241 ~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
++||.++|..+-+|..||..+++-.+++. +..+.+
T Consensus 256 ~G~~vi~y~hpveavqaIsml~~~g~~~~---~~~~Rl 290 (608)
T KOG4212|consen 256 RGFAVIEYDHPVEAVQAISMLDRQGLFDR---RMTVRL 290 (608)
T ss_pred CCeeEEEecchHHHHHHHHhhccCCCccc---cceeec
Confidence 88999999999999999999998777655 444443
No 43
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=5.4e-16 Score=105.30 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=62.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec-CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
|||+|||.++|+++|+++|+.||.|..+++... .+..+++|||+|.+.++|.+|++.++|..+. |+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~---~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN---GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC---ccCcC
Confidence 799999999999999999999999999998864 4445569999999999999999999999998 88775
No 44
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=4.2e-16 Score=130.52 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.+--++|+|+|+|+...+.||+.+|++||.|.+|.|++..||.+||+||+|.+++||.+|.++|||..+. ||+|.|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE---GRkIEVn 169 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE---GRKIEVN 169 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee---ceEEEEe
Confidence 4445889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EeecCC
Q 023143 112 LARSNS 117 (286)
Q Consensus 112 ~~~~~~ 117 (286)
.+....
T Consensus 170 ~ATarV 175 (376)
T KOG0125|consen 170 NATARV 175 (376)
T ss_pred ccchhh
Confidence 887543
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.65 E-value=7.8e-16 Score=132.19 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=121.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+.+.|||++|+++++++.|++.|+.||+|.+|.+..+ ....++|+||+|.+++...+++..- -..|+ |+.+.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~-~h~~d---gr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR-THKLD---GRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc-ccccC---Cccccce
Confidence 7889999999999999999999999999999988732 2233449999999999998888532 22344 6666666
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
-+.+.......
T Consensus 81 ~av~r~~~~~~--------------------------------------------------------------------- 91 (311)
T KOG4205|consen 81 RAVSREDQTKV--------------------------------------------------------------------- 91 (311)
T ss_pred eccCccccccc---------------------------------------------------------------------
Confidence 54432221111
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
........+||+.||.++++++|++.|.+||.|..+.++. .+.++|+||.|.+.++..+++.. ....|.
T Consensus 92 ------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~ 164 (311)
T KOG4205|consen 92 ------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFN 164 (311)
T ss_pred ------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeec
Confidence 0001377899999999999999999999999888887765 55678999999999998888754 444444
Q ss_pred CCCCCcEEEEEec
Q 023143 268 SSDRGGMHIEYAR 280 (286)
Q Consensus 268 ~~~g~~l~V~~ak 280 (286)
++.+.|.-|.
T Consensus 165 ---gk~vevkrA~ 174 (311)
T KOG4205|consen 165 ---GKKVEVKRAI 174 (311)
T ss_pred ---CceeeEeecc
Confidence 2255555443
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=1.2e-15 Score=141.55 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC--CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRK--PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++|||+|||.++++++|+++|+.| |.|..|++. ++ ||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rg---fAFVeF~s~e~A~kAi~~lnG~~i~---Gr~I~V 301 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RD---YAFVHFEDREDAVKAMDELNGKELE---GSEIEV 301 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cC---eEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 346889999999999999999999999 999999876 55 9999999999999999999999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
.|++..
T Consensus 302 ~~Akp~ 307 (578)
T TIGR01648 302 TLAKPV 307 (578)
T ss_pred EEccCC
Confidence 999754
No 47
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.64 E-value=8.6e-14 Score=118.57 Aligned_cols=201 Identities=16% Similarity=0.183 Sum_probs=143.6
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..++.+++|-+|.- .++.+.|.++|-.||.|+.|++..+..+ .|.|+..+....++|+..||+..+. |.+|.|
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g---tamVemgd~~aver~v~hLnn~~lf---G~kl~v 357 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG---TAMVEMGDAYAVERAVTHLNNIPLF---GGKLNV 357 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc---eeEEEcCcHHHHHHHHHHhccCccc---cceEEE
Confidence 45779999999995 4899999999999999999999855544 9999999999999999999999997 999999
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.+++.+.-.... .+.-.|-. .+...++.+. .....+|..
T Consensus 358 ~~SkQ~~v~~~~----pflLpDgS----------pSfKdys~Sk------------NnRFssp~q--------------- 396 (494)
T KOG1456|consen 358 CVSKQNFVSPVQ----PFLLPDGS----------PSFKDYSGSK------------NNRFSSPEQ--------------- 396 (494)
T ss_pred eeccccccccCC----ceecCCCC----------cchhhccccc------------ccccCChhH---------------
Confidence 998754322111 01000000 0000000000 000000000
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCC-ceEEEEeecCC--ccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPG-FNMLKMRARGG--MPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~-v~~v~~~~~~~--~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.......+|+++|..-|.|..+||+.|..||...+. ..+|++...++ ..-+.++|++.++|..||-.+|...|.
T Consensus 397 ---AsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 397 ---ASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred ---hhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhcccccc
Confidence 011223567999999999999999999999987663 34667766332 237999999999999999999999999
Q ss_pred CCCCC---cEEEEEeccc
Q 023143 268 SSDRG---GMHIEYARSK 282 (286)
Q Consensus 268 ~~~g~---~l~V~~ak~~ 282 (286)
+..|. .|++.|+.++
T Consensus 474 ~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 474 GPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CCCCCCCeeeeeeecccc
Confidence 88555 6787777655
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=5.2e-16 Score=112.98 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCee--EEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
...++||||+||++.++|++|+++|+++|.|..|.+-++.-.+.+ ||||+|.+.++|..|++.++|..++ .++|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd---dr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD---DRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc---cccee
Confidence 346899999999999999999999999999998877655333222 9999999999999999999999999 99999
Q ss_pred EEEee
Q 023143 110 IELAR 114 (286)
Q Consensus 110 v~~~~ 114 (286)
+.|..
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99864
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=7.2e-16 Score=104.70 Aligned_cols=67 Identities=28% Similarity=0.473 Sum_probs=61.3
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 206 LFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 206 L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
|||+|||.++|+++|+++|++||.|..+++.. +..+++|||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR---KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence 79999999999999999999999999999988 34567999999999999999999999999944 765
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=1.9e-15 Score=133.31 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=72.4
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
....++|||+|||.++|+++|+++|+.||.|++|+++. +++++||||+|.+.++|.+||+.|||..+.++ .|+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr---~i~ 180 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK---RLK 180 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc---eee
Confidence 34589999999999999999999999999999999976 45678999999999999999999999999955 999
Q ss_pred EEEecc
Q 023143 276 IEYARS 281 (286)
Q Consensus 276 V~~ak~ 281 (286)
|+|++.
T Consensus 181 V~~a~p 186 (346)
T TIGR01659 181 VSYARP 186 (346)
T ss_pred eecccc
Confidence 999875
No 51
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.62 E-value=5.4e-15 Score=132.18 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..+++|||+|||+++++++|+++|++||.|.+|+|..+. ...++||||+|.+.++|.+||+.|||..|. ||.|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~---gr~i~V 343 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG---NRVLQV 343 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 344589999999999999999999999999999998542 233559999999999999999999999999 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
.|....
T Consensus 344 ~~~~~~ 349 (352)
T TIGR01661 344 SFKTNK 349 (352)
T ss_pred EEccCC
Confidence 998654
No 52
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.61 E-value=7.9e-14 Score=121.02 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=66.6
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
+..++|||+|||.++|.+.|++-|..||.|.++.|+. +++ .+.|+|.++++|.+|+..|||..+. |+.|+|+|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks--kGVVrF~s~edAEra~a~Mngs~l~---Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS--KGVVRFFSPEDAERACALMNGSRLD---GRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc--cceEEecCHHHHHHHHHHhccCccc---CceeeeeeC
Confidence 4578999999999999999999999999999998855 444 4599999999999999999999999 669999984
No 53
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3.6e-15 Score=114.52 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
-++.|||+||+..+++.||...|+.||.|-.|.|-....+ ||||+|.++.+|..|+..|+|..|. |..++|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPG---fAFVEFed~RDA~DAvr~LDG~~~c---G~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPG---FAFVEFEDPRDAEDAVRYLDGKDIC---GSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCC---ceEEeccCcccHHHHHhhcCCcccc---CceEEEEee
Confidence 4788999999999999999999999999999999855555 9999999999999999999999996 999999998
Q ss_pred ecCC
Q 023143 114 RSNS 117 (286)
Q Consensus 114 ~~~~ 117 (286)
....
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 7543
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=8.2e-14 Score=118.41 Aligned_cols=80 Identities=24% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEe--cCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY--TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.-++|||..+..+++|+||+.+|+.||+|..|++-. +.++.++|+|++|.+..+-.+|+..||-..+. |.-|+|.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG---GQyLRVG 285 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYLRVG 285 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc---cceEecc
Confidence 348899999999999999999999999999999873 45666779999999999999999999999997 8888887
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
-+.+.
T Consensus 286 k~vTP 290 (544)
T KOG0124|consen 286 KCVTP 290 (544)
T ss_pred cccCC
Confidence 65543
No 55
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=7e-15 Score=118.66 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=72.6
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
...+|-|.||+.+++|++|++||.+||.|.++.+.+ +.++|||||.|.+.++|++||+.|||..+..- .|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L---ILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL---ILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE---EEEEE
Confidence 377899999999999999999999999999999987 66889999999999999999999999999855 99999
Q ss_pred Eeccc
Q 023143 278 YARSK 282 (286)
Q Consensus 278 ~ak~~ 282 (286)
|+|.+
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99864
No 56
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=120.84 Aligned_cols=76 Identities=22% Similarity=0.357 Sum_probs=68.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
.++|||+|||+.+|+++|+++|+.||.|.+|.|...+. .++||||+|.++++|..|+. |+|..|. |+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~---gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIV---DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeC---CceEEEEecc
Confidence 68999999999999999999999999999999985532 34599999999999999995 9999998 9999999875
Q ss_pred c
Q 023143 115 S 115 (286)
Q Consensus 115 ~ 115 (286)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 4
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=119.85 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=68.8
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC-CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~-~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
.++|||+||++.+|+++|+++|+.||.|.+|.|...+ .++||||+|.+.++|..|| .|||..|. |+.|.|+++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~---gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIV---DQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeC---CceEEEEeccC
Confidence 6799999999999999999999999999999998854 5689999999999999999 59999999 44999999873
No 58
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.4e-14 Score=99.75 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=71.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
..++.|||+|||+++|.++..++|.+||.|..|+|-.. ++-+|.|||.|.+..+|++|+..|+|..+. ++.+.|.|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~-k~TrGTAFVVYedi~dAk~A~dhlsg~n~~---~ryl~vly 91 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT-KETRGTAFVVYEDIFDAKKACDHLSGYNVD---NRYLVVLY 91 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc-cCcCceEEEEehHhhhHHHHHHHhcccccC---CceEEEEe
Confidence 45788999999999999999999999999999998733 333559999999999999999999999998 99999999
Q ss_pred eecC
Q 023143 113 ARSN 116 (286)
Q Consensus 113 ~~~~ 116 (286)
....
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 8654
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=3.1e-14 Score=119.40 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=70.5
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.++|+|+|||+..-+-||+.+|++||.|.+|.|+- ..+||||||+|++.+||++|-++|||..+. ||+|.|.-|.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE---GRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE---GRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee---ceEEEEeccc
Confidence 57799999999999999999999999999999887 447899999999999999999999999999 6699998875
Q ss_pred cc
Q 023143 281 SK 282 (286)
Q Consensus 281 ~~ 282 (286)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 60
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=4.1e-14 Score=99.31 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=67.7
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
++.|||+|||+.+|.|++.+||.+||.|.-+++-. ...+|.|||-|++..+|.+|++.|+|.-+.+. -|.|-|-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r---yl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR---YLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc---eEEEEec
Confidence 89999999999999999999999999999998876 55678999999999999999999999999844 8888773
No 61
>PLN03213 repressor of silencing 3; Provisional
Probab=99.54 E-value=2.7e-14 Score=125.65 Aligned_cols=78 Identities=17% Similarity=0.277 Sum_probs=72.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCH--HHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEV--EQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~--e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
.+.+||||||+.++++++|+.+|+.||.|.+|.|++..+||||||+|.+. .++.+||+.|||..+. |+.|+|.-|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK---GR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK---GGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec---CceeEEeec
Confidence 47889999999999999999999999999999999977799999999987 7899999999999999 669999999
Q ss_pred ccc
Q 023143 280 RSK 282 (286)
Q Consensus 280 k~~ 282 (286)
|..
T Consensus 86 KP~ 88 (759)
T PLN03213 86 KEH 88 (759)
T ss_pred cHH
Confidence 865
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=9.1e-14 Score=94.47 Aligned_cols=69 Identities=29% Similarity=0.475 Sum_probs=59.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
|||+|||+++++++|+++|+.||.|..+++.....+ .+++|||+|.++++|.+|++.++|..+. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~---g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID---GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC---CEEcC
Confidence 799999999999999999999999999999855322 2449999999999999999999999998 88764
No 63
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6e-14 Score=107.85 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=71.1
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
-.+.|||+||+..+++.||..+|..||.+..|-+-.. ..|||||+|+++.+|..|+..|+|..|- |..|+|++++-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~c---G~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDIC---GSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCcccc---CceEEEEeecC
Confidence 3788999999999999999999999999999988773 3479999999999999999999999999 44999999876
Q ss_pred ccC
Q 023143 282 KMR 284 (286)
Q Consensus 282 ~~~ 284 (286)
+.+
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 654
No 64
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.51 E-value=3.1e-13 Score=115.84 Aligned_cols=173 Identities=21% Similarity=0.265 Sum_probs=119.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
.++|||+|||.++++++|+++|+.||.|..+.+..+. ...++||||+|.+.++|..|++.++|..|. |+.|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~---~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE---GRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC---CceeEeec
Confidence 6999999999999999999999999999888887543 233459999999999999999999999998 99999998
Q ss_pred eecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCC
Q 023143 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQS 192 (286)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (286)
.......... ... . .. .... . ..
T Consensus 192 ~~~~~~~~~~-~~~-------~----~~----~~~~-------~-----------------~~----------------- 214 (306)
T COG0724 192 AQPASQPRSE-LSN-------N----LD----ASFA-------K-----------------KL----------------- 214 (306)
T ss_pred cccccccccc-ccc-------c----cc----hhhh-------c-----------------cc-----------------
Confidence 7540000000 000 0 00 0000 0 00
Q ss_pred CCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCC----ccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 193 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG----MPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 193 ~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~----~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.............+++.|++..++..++...|..+|.+....+..... ..+.++.+.....+...+.........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (306)
T COG0724 215 SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKIL 293 (306)
T ss_pred cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeec
Confidence 001112233588899999999999999999999999997777766322 123445555555555555554444433
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=6.4e-14 Score=95.21 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=57.3
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC---CccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 206 LFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG---GMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 206 L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~---~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
|||+|||.++++++|+++|+.||.|..+++...+ ++++|||+|.+.++|.+|++.++|..+.++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 7999999999999999999999999999998853 467999999999999999999999999844
No 66
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.8e-13 Score=111.50 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=72.5
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
...++|.|.-||.++|+|||+.+|+..|+|++|++++ +.+.||+||.|.+++||++|+..|||..+..| .|+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K---TIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK---TIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc---eEEE
Confidence 3477888999999999999999999999999999998 55777999999999999999999999999977 9999
Q ss_pred EEecc
Q 023143 277 EYARS 281 (286)
Q Consensus 277 ~~ak~ 281 (286)
+|||.
T Consensus 116 SyARP 120 (360)
T KOG0145|consen 116 SYARP 120 (360)
T ss_pred EeccC
Confidence 99985
No 67
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.48 E-value=1.1e-12 Score=115.67 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=108.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
......|-+++||+.||++||.++|+.++ |+++.+........+=|||+|.+.+++++|++ .+-..+- .|-|.|-
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg---~RYIEVf 81 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMG---HRYIEVF 81 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhC---CceEEEE
Confidence 34566789999999999999999999996 66655543212224499999999999999997 4555553 4444443
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
..+...... + +...
T Consensus 82 --~~~~~e~d~------~-----------------------------~~~~----------------------------- 95 (510)
T KOG4211|consen 82 --TAGGAEADW------V-----------------------------MRPG----------------------------- 95 (510)
T ss_pred --ccCCccccc------c-----------------------------ccCC-----------------------------
Confidence 322111100 0 0000
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceE-EEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNM-LKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~-v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.... .....+|-+++||++||++||.++|+-.-.|.. +.+.. .+..+=|||+|++.+.|++|+.. |-+.|+
T Consensus 96 ---g~~s-~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG 170 (510)
T KOG4211|consen 96 ---GPNS-SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIG 170 (510)
T ss_pred ---CCCC-CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhc
Confidence 0000 013567889999999999999999998877665 22222 44556899999999999999976 566666
No 68
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.6e-13 Score=111.00 Aligned_cols=76 Identities=17% Similarity=0.234 Sum_probs=67.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
...+|||+||++.+|+++|+++|+.||.|..|+|..+++ ..++|||+|.++++|..|+ .|+|..|. +++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAl-lLnGa~l~---d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAV-LLSGATIV---DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHH-hcCCCeeC---CceEEEEeC
Confidence 468999999999999999999999999999999995543 3459999999999999999 69999998 999998865
Q ss_pred e
Q 023143 114 R 114 (286)
Q Consensus 114 ~ 114 (286)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 4
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.9e-13 Score=109.39 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
..+++++|-|.|||.+++|++|.+||.+||.|..|.|..+... .+|||||.|.+.++|.+||..|||.-++ .-.|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd---~LIL 261 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD---NLIL 261 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc---eEEE
Confidence 4567889999999999999999999999999999988744222 2449999999999999999999999998 8899
Q ss_pred EEEEeecC
Q 023143 109 HIELARSN 116 (286)
Q Consensus 109 ~v~~~~~~ 116 (286)
+|+|++..
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99998753
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=2.3e-13 Score=119.86 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCH--HHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNH--QTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~--~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
.....+||||||++.+++++|+.+|+.||.|..|.|. +..+ ++||||+|.+. .++.+||..|||..|. |+.|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp-RETG-RGFAFVEMssdddaEeeKAISaLNGAEWK---GR~LK 81 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-RTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWK---GGRLR 81 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-cccC-CceEEEEecCCcHHHHHHHHHHhcCCeec---CceeE
Confidence 3456789999999999999999999999999999998 3333 67999999988 7899999999999999 99999
Q ss_pred EEEeec
Q 023143 110 IELARS 115 (286)
Q Consensus 110 v~~~~~ 115 (286)
|+-++.
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 998874
No 71
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.6e-13 Score=100.12 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=67.5
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC----CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
..++||||+||.+.++||.|.+||++.|.|..|-|--++ .=|||||+|-+.++|..|+..+||..+.++ +|+|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr---~ir~ 110 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR---PIRI 110 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc---ceee
Confidence 359999999999999999999999999999988764422 235999999999999999999999999977 9999
Q ss_pred EEe
Q 023143 277 EYA 279 (286)
Q Consensus 277 ~~a 279 (286)
.|-
T Consensus 111 D~D 113 (153)
T KOG0121|consen 111 DWD 113 (153)
T ss_pred ecc
Confidence 873
No 72
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=4.3e-13 Score=120.95 Aligned_cols=181 Identities=16% Similarity=0.241 Sum_probs=128.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
-..+||+|||..+++++++++.+.||.+....+..+.. ++++|||.+|.++.....|+..|||..+. ++.|.++.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg---d~~lvvq~ 365 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG---DKKLVVQR 365 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc---CceeEeeh
Confidence 35699999999999999999999999997777764333 56669999999999999999999999997 89999998
Q ss_pred eecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCC
Q 023143 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQS 192 (286)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (286)
+..+......... ... . ...++ +.
T Consensus 366 A~~g~~~~~~~~~-------------~~~---~--------------------~~~~i--~~------------------ 389 (500)
T KOG0120|consen 366 AIVGASNANVNFN-------------ISQ---S--------------------QVPGI--PL------------------ 389 (500)
T ss_pred hhccchhccccCC-------------ccc---c--------------------ccccc--hh------------------
Confidence 7654322111000 000 0 00000 00
Q ss_pred CCCCCCCCCCccEEEEccCCC--C-CCH-------HHHHHHHhcCCCceEEEEeec-------CCccEEEEEECCHHHHH
Q 023143 193 EKPYEGGVQPCSTLFIANLGP--N-CTE-------DELKQTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQAS 255 (286)
Q Consensus 193 ~~~~~~~~~~~~~L~v~NL~~--~-~te-------~~L~~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A~ 255 (286)
........+..+|-+.|+=. . ..+ |+++.-|++||.|..|.+.+. .+.|..||+|.+.++++
T Consensus 390 -~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~q 468 (500)
T KOG0120|consen 390 -LMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQ 468 (500)
T ss_pred -hhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHH
Confidence 00011122455555555431 0 011 566668899999999998763 35678999999999999
Q ss_pred HHHHhcCCCccCCCCCCcEEEEE
Q 023143 256 IAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 256 ~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+|+++|+|.+|.++ ++..+|
T Consensus 469 rA~~~L~GrKF~nR---tVvtsY 488 (500)
T KOG0120|consen 469 RAMEELTGRKFANR---TVVASY 488 (500)
T ss_pred HHHHHccCceeCCc---EEEEEe
Confidence 99999999999944 888887
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=2.6e-13 Score=87.95 Aligned_cols=56 Identities=25% Similarity=0.385 Sum_probs=51.0
Q ss_pred HHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 220 LKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 220 L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
|+++|++||.|..+.+.... +++|||+|.+.++|.+|++.|||..+. |+.|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~---g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN---GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET---TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEC
Confidence 78999999999999998865 589999999999999999999999998 559999997
No 74
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.2e-13 Score=109.76 Aligned_cols=75 Identities=17% Similarity=0.156 Sum_probs=67.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|++ +..++||||+|.++++|..|+ .|||..|.+. .|.|+-+-
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQ---RVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEeCc
Confidence 478999999999999999999999999999999998 444569999999999999999 8999999955 88887643
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=5.1e-13 Score=90.34 Aligned_cols=71 Identities=30% Similarity=0.492 Sum_probs=62.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
+|||+|||..+++++|+++|+.||.|..+.+........++|||+|.+.++|.+|++.++|..+. |+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~---~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG---GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC---CEEEee
Confidence 58999999999999999999999999998888443223449999999999999999999999997 888776
No 76
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.45 E-value=3e-13 Score=108.55 Aligned_cols=80 Identities=33% Similarity=0.386 Sum_probs=73.0
Q ss_pred CccEEEEccCCCCCCHHHHHH----HHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQ----TLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~----~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
++.||||.||+..+..++|+. +|++||.|..|...+ .+.+|-|||.|.+.+.|-.|+.+|+|+.+.|+ .++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK---~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK---PMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc---hhhe
Confidence 455999999999999999999 999999999888765 67789999999999999999999999999966 9999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+++..
T Consensus 85 qyA~s~sd 92 (221)
T KOG4206|consen 85 QYAKSDSD 92 (221)
T ss_pred ecccCccc
Confidence 99998753
No 77
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.7e-13 Score=106.18 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=70.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCC-ccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG-MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~-~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
..++|||+|||.++-+.||.+||.+||.|..|.|....+ .+||||+|+++.+|+.||..-+|..++ |+.|+|+|++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC---cceEEEEecc
Confidence 478899999999999999999999999999999988443 469999999999999999999999998 8899999987
Q ss_pred c
Q 023143 281 S 281 (286)
Q Consensus 281 ~ 281 (286)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 5
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=5.7e-13 Score=90.08 Aligned_cols=70 Identities=33% Similarity=0.524 Sum_probs=62.9
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC--CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 205 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 205 ~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~--~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+|||+|||..+++++|+++|++||.|..+.+.... ++++|||+|.+.++|.+|++.++|..+. |+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~---~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG---GRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC---CEEEeeC
Confidence 58999999999999999999999999999888743 5689999999999999999999999998 4477763
No 79
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=5.1e-13 Score=110.88 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
+++-+||||+-|+++++|++|+..|+.||+|..|+|+-+ ....++||||+|.++.+...|++..+|..|+ |+.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id---grri~ 174 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID---GRRIL 174 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec---CcEEE
Confidence 678899999999999999999999999999999999833 2223559999999999999999999999999 99999
Q ss_pred EEEeec
Q 023143 110 IELARS 115 (286)
Q Consensus 110 v~~~~~ 115 (286)
|.+...
T Consensus 175 VDvERg 180 (335)
T KOG0113|consen 175 VDVERG 180 (335)
T ss_pred EEeccc
Confidence 998764
No 80
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.9e-13 Score=117.86 Aligned_cols=77 Identities=27% Similarity=0.472 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
..+.|||+||+.++||+.|+++|+.||.|+.|+.. |. ||||+|.+.++|.+||+.+||++|. |..|.|-++
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rD---YaFVHf~eR~davkAm~~~ngkeld---G~~iEvtLA 328 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RD---YAFVHFAEREDAVKAMKETNGKELD---GSPIEVTLA 328 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cc---eeEEeecchHHHHHHHHHhcCceec---CceEEEEec
Confidence 45889999999999999999999999999999877 66 9999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 023143 114 RSNSRK 119 (286)
Q Consensus 114 ~~~~~~ 119 (286)
+...+.
T Consensus 329 KP~~k~ 334 (506)
T KOG0117|consen 329 KPVDKK 334 (506)
T ss_pred CChhhh
Confidence 865433
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.42 E-value=2.1e-13 Score=107.57 Aligned_cols=75 Identities=20% Similarity=0.344 Sum_probs=70.5
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
-.+|.|-||-.-++.++|+.+|++||.|-+|.|.. ..++|||||.|....+|+.|+++|+|..+. |+.|.|++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld---gRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD---GRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec---cceeeehh
Confidence 67899999999999999999999999999999987 667899999999999999999999999999 55999999
Q ss_pred ec
Q 023143 279 AR 280 (286)
Q Consensus 279 ak 280 (286)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 87
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.39 E-value=6.4e-13 Score=104.82 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
|+-+...+|-|-||-+.++.++|+.+|++||.|..|.|..+ .+..++||||.|....+|+.|++.|+|..|+ |+.
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld---gRe 84 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD---GRE 84 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec---cce
Confidence 44566788999999999999999999999999999988743 2334459999999999999999999999999 999
Q ss_pred EEEEEeec
Q 023143 108 LHIELARS 115 (286)
Q Consensus 108 l~v~~~~~ 115 (286)
|+|++++-
T Consensus 85 lrVq~ary 92 (256)
T KOG4207|consen 85 LRVQMARY 92 (256)
T ss_pred eeehhhhc
Confidence 99999874
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=4.2e-12 Score=86.24 Aligned_cols=71 Identities=30% Similarity=0.533 Sum_probs=64.3
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC---CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 205 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG---GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 205 ~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~---~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+|+|+|||..+++++|+++|+.||.|..+.+.... .+++|||+|.+.++|..|++.++|..+. |+.++|+|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~---~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG---GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEeC
Confidence 48999999999999999999999999999998843 3689999999999999999999999998 44888865
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.37 E-value=3e-12 Score=86.15 Aligned_cols=67 Identities=27% Similarity=0.470 Sum_probs=60.1
Q ss_pred EccCCCCCCHHHHHHHHhcCCCceEEEEeecC----CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 208 IANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 208 v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
|+|||..+++++|+++|++||.|..+.+.... ++++|||+|.+.++|..|++.|+|..+.+ +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~---~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG---RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC---cEEEeC
Confidence 68999999999999999999999999988744 36899999999999999999999999984 487763
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.37 E-value=3e-12 Score=82.92 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=49.5
Q ss_pred HHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 52 IHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 52 L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
|+++|++||.|..+.+....++ +|||+|.+.++|..|++.|||..+. |++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~---~a~V~f~~~~~A~~a~~~l~~~~~~---g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRG---FAFVEFASVEDAQKAIEQLNGRQFN---GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTT---EEEEEESSHHHHHHHHHHHTTSEET---TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEC
Confidence 7899999999999988733324 9999999999999999999999998 999999986
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=6.3e-12 Score=85.37 Aligned_cols=73 Identities=30% Similarity=0.496 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC-CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
+|+|+|||..+++++|+++|+.||.|..+.+..... ...++|||+|.+.++|..|++.+++..+. |+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~---~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG---GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEeC
Confidence 589999999999999999999999999988884432 12449999999999999999999999998 99988864
No 87
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7.1e-13 Score=105.49 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=73.0
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..+||||++|...++|.-|...|-+||.|..++++- .+.++||||+|+..|+|.+||..||+.++. |+.|+|.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---GRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---ceeEEEe
Confidence 378999999999999999999999999999999875 677899999999999999999999999999 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
|||...
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 998643
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=2.9e-12 Score=94.41 Aligned_cols=75 Identities=13% Similarity=0.305 Sum_probs=68.4
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+=.|||.++...+||++|.+.|..||.|+.+.+-- +..+|||+|+|++.++|++|+++|||..+- |..|.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQNVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CCceeEEE
Confidence 67899999999999999999999999999888743 667889999999999999999999999999 44999999
Q ss_pred ec
Q 023143 279 AR 280 (286)
Q Consensus 279 ak 280 (286)
+=
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 73
No 89
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.9e-12 Score=103.24 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=63.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
..|||+||++.++.+.|++.|++||+|+++.++-+ ....++|+||+|.+.++|.+|++.-+-. |+ ||+-.+.++
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~pi-Id---GR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPI-ID---GRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCc-cc---ccccccchh
Confidence 56999999999999999999999999999888732 2223559999999999999999865544 55 888888877
Q ss_pred ec
Q 023143 114 RS 115 (286)
Q Consensus 114 ~~ 115 (286)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 65
No 90
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=5.8e-12 Score=113.04 Aligned_cols=78 Identities=23% Similarity=0.426 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
++|||||+|+++++++|.++|+..|.|.++++..++.+ .+||||++|.+.++|..|++.|||.++. ||+|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~---gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN---GRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC---CceEEeecc
Confidence 89999999999999999999999999999999966443 3449999999999999999999999998 999999998
Q ss_pred ecC
Q 023143 114 RSN 116 (286)
Q Consensus 114 ~~~ 116 (286)
...
T Consensus 96 ~~~ 98 (435)
T KOG0108|consen 96 SNR 98 (435)
T ss_pred ccc
Confidence 654
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.30 E-value=1.2e-11 Score=83.13 Aligned_cols=69 Identities=30% Similarity=0.469 Sum_probs=60.0
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 40 VSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 40 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
|+|||..+++++|+++|+.||.|..+.+..... ..+++|||+|.+.++|.+|++.+++..+. |+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~---~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD---GRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC---CcEEEeC
Confidence 689999999999999999999999998885432 22349999999999999999999999997 8888763
No 92
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=3.6e-12 Score=119.53 Aligned_cols=161 Identities=19% Similarity=0.303 Sum_probs=133.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++|||++||+..+++.+|+..|+.+|.|.+|.|+....+ ...||||.|.+...+-.|...+.+..|- ...+++
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~---~g~~r~ 445 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG---NGTHRI 445 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc---cCcccc
Confidence 446799999999999999999999999999999999843222 2229999999999999999888888883 222222
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
.+... +
T Consensus 446 glG~~------k-------------------------------------------------------------------- 451 (975)
T KOG0112|consen 446 GLGQP------K-------------------------------------------------------------------- 451 (975)
T ss_pred ccccc------c--------------------------------------------------------------------
Confidence 22110 0
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCC
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 270 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~ 270 (286)
..+++.+++++|..-+....|...|..||.|..+.+..+. .||+|.|+++..|+.|+..|-|+.+++-
T Consensus 452 ---------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq--~yayi~yes~~~aq~a~~~~rgap~G~P- 519 (975)
T KOG0112|consen 452 ---------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ--PYAYIQYESPPAAQAATHDMRGAPLGGP- 519 (975)
T ss_pred ---------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC--cceeeecccCccchhhHHHHhcCcCCCC-
Confidence 1147889999999999999999999999999998888877 8999999999999999999999999865
Q ss_pred CCcEEEEEecc
Q 023143 271 RGGMHIEYARS 281 (286)
Q Consensus 271 g~~l~V~~ak~ 281 (286)
-+.++|.||..
T Consensus 520 ~~r~rvdla~~ 530 (975)
T KOG0112|consen 520 PRRLRVDLASP 530 (975)
T ss_pred CcccccccccC
Confidence 55799999875
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.3e-12 Score=102.55 Aligned_cols=85 Identities=26% Similarity=0.407 Sum_probs=74.8
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
+..+..-+||||++|-.+++|..|...|-+||.|..|++.++ ....++||||+|...|+|..||..||+.+|. ||
T Consensus 4 ~~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---Gr 80 (298)
T KOG0111|consen 4 QQMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---GR 80 (298)
T ss_pred ccccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---ce
Confidence 344567899999999999999999999999999999998854 2333449999999999999999999999998 99
Q ss_pred eEEEEEeecC
Q 023143 107 VLHIELARSN 116 (286)
Q Consensus 107 ~l~v~~~~~~ 116 (286)
.|+|.+++..
T Consensus 81 tirVN~AkP~ 90 (298)
T KOG0111|consen 81 TIRVNLAKPE 90 (298)
T ss_pred eEEEeecCCc
Confidence 9999999864
No 94
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=8.7e-12 Score=111.93 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=72.8
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
+++||||+|+++++++|.++|+..|.|.++++.. ++.+||||++|.+.++|.+|++.|||.++. |++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~---gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN---GRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC---CceEEeecc
Confidence 8999999999999999999999999999999987 677889999999999999999999999999 669999998
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
.....
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 76554
No 95
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=2.7e-11 Score=100.73 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=73.2
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.|=+||||+-|+..++|.+|+..|+.||.|+.++|+. ++++|||||+|++..+-..|.+..+|..|. |+.|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id---grri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID---GRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec---CcEEEE
Confidence 3689999999999999999999999999999999987 778999999999999999999999999999 559999
Q ss_pred EEecccc
Q 023143 277 EYARSKM 283 (286)
Q Consensus 277 ~~ak~~~ 283 (286)
.+=+.+-
T Consensus 176 DvERgRT 182 (335)
T KOG0113|consen 176 DVERGRT 182 (335)
T ss_pred Eeccccc
Confidence 8866543
No 96
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=4.2e-13 Score=103.81 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=68.8
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+-.|||+|||...||.||.-.|++||+|..|-+++ ++++||||+.|++..+..-|+..|||..|. |+.|+|.-
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---ceeEEeee
Confidence 78899999999999999999999999999999988 778999999999999999999999999999 55999875
No 97
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=8.1e-12 Score=100.73 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=58.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.-+.|||++|++.+..|+|++.|++||+|.++.++. +++||||||+|.+.++|.+|++..| -.|+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId 79 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID 79 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc
Confidence 367899999999999999999999999999998887 7789999999999999999998854 3455
No 98
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.26 E-value=2.3e-11 Score=104.17 Aligned_cols=75 Identities=25% Similarity=0.404 Sum_probs=69.5
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..+|||+|||..+++++|+++|..||.|..+.+.. +.++|||||+|.+.++|..|++.++|..+.+ +.|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~---~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG---RPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC---ceeEeec
Confidence 69999999999999999999999999999888866 5678899999999999999999999999994 4999999
Q ss_pred ec
Q 023143 279 AR 280 (286)
Q Consensus 279 ak 280 (286)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 64
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.24 E-value=1.7e-11 Score=113.35 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=71.6
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEeccc
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~ 282 (286)
++||||+.|+.+++|.||.++|+.||.|.+|.++..+ +||||.+....+|.+|+.+|++..+.++ .|+|.||..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccce---eeEEeeeccC
Confidence 8999999999999999999999999999999999887 9999999999999999999999999966 9999999765
No 100
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.23 E-value=4.2e-11 Score=95.72 Aligned_cols=82 Identities=27% Similarity=0.430 Sum_probs=73.8
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-cCC----ccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGG----MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-~~~----~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
-+||||.+||.++---||+.+|+.|-+.+.+.+.. +++ +.+|||.|.+.++|.+|+.+|||..|+-..+..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 79999999999999999999999999998877765 332 3699999999999999999999999988878899999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
+||++-+
T Consensus 114 lAKSNtK 120 (284)
T KOG1457|consen 114 LAKSNTK 120 (284)
T ss_pred ehhcCcc
Confidence 9998753
No 101
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=3.3e-11 Score=108.13 Aligned_cols=177 Identities=20% Similarity=0.183 Sum_probs=115.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
....++|||-|||..+++++|+.+|+.||+|..|+.-...++ .+||+|.+..+|++|++.|+++++. |+.+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~---~~~v~FyDvR~A~~Alk~l~~~~~~---~~~~k-- 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRG---IVFVEFYDVRDAERALKALNRREIA---GKRIK-- 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCc---eEEEEEeehHhHHHHHHHHHHHHhh---hhhhc--
Confidence 456789999999999999999999999999998877755555 9999999999999999999999998 77766
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
+... ..+. .......... ... ..+....+..+
T Consensus 144 --~~~~-~~~~----------------~~~~~~~~~~------------~~~---------------~~p~a~s~pgg-- 175 (549)
T KOG4660|consen 144 --RPGG-ARRA----------------MGLQSGTSFL------------NHF---------------GSPLANSPPGG-- 175 (549)
T ss_pred --CCCc-cccc----------------chhcccchhh------------hhc---------------cchhhcCCCCC--
Confidence 1100 0000 0000000000 000 00000000000
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
. +-..+|+ .|++..+..-++.+|.-+|.+.. +...-. ...-|+.|.+..++..+...+ |+.+.++
T Consensus 176 --------~-~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~-~hq~~~~~~~~~s~a~~~~~~-G~~~s~~-- 240 (549)
T KOG4660|consen 176 --------W-PRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLL-NHQRFVEFADNRSYAFSEPRG-GFLISNS-- 240 (549)
T ss_pred --------C-cCCccee-eeccchhhhhhhcchhccCcccc-ccccch-hhhhhhhhccccchhhcccCC-ceecCCC--
Confidence 0 0122333 49999888888889999998876 333311 136789999999997777755 7777755
Q ss_pred CcEEEEEec
Q 023143 272 GGMHIEYAR 280 (286)
Q Consensus 272 ~~l~V~~ak 280 (286)
..-++|+.
T Consensus 241 -~~v~t~S~ 248 (549)
T KOG4660|consen 241 -SGVITFSG 248 (549)
T ss_pred -CceEEecC
Confidence 45555543
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=6.2e-11 Score=107.18 Aligned_cols=185 Identities=18% Similarity=0.274 Sum_probs=131.8
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcC-----------CC-ccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHH
Q 023143 27 HHQQQDNGINTLFVSGLPDDVRAREIHNLFRRK-----------PG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94 (286)
Q Consensus 27 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----------G~-i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~ 94 (286)
-+......++.++|+++|..++++..-.+|..- |+ |..+.+.. -++ |||++|.+.+.|..|+.
T Consensus 167 ~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-~~n---fa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 167 MDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-EKN---FAFIEFRSISEATEAMA- 241 (500)
T ss_pred cCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-ccc---ceeEEecCCCchhhhhc-
Confidence 334446677889999999999999999888754 33 56666652 234 99999999999999985
Q ss_pred hCCCccCCCCCCeEEEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023143 95 LNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQ 174 (286)
Q Consensus 95 l~g~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (286)
+++..+. |.++++.-....... . ...... . . ..... ...
T Consensus 242 ~~~~~f~---g~~~~~~r~~d~~~~--p-~~~~~~---~---~------~~~~~------~~~----------------- 280 (500)
T KOG0120|consen 242 LDGIIFE---GRPLKIRRPHDYQPV--P-GITLSP---S---Q------LGKVG------LLP----------------- 280 (500)
T ss_pred ccchhhC---CCCceecccccccCC--c-cchhhh---c---c------ccccC------Ccc-----------------
Confidence 7888787 888887643321110 0 000000 0 0 00000 000
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECC
Q 023143 175 SERATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEE 250 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~ 250 (286)
......-....+||+|||..+++..++++.+.||.+....+.. +.+++|||.+|-+
T Consensus 281 --------------------~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~d 340 (500)
T KOG0120|consen 281 --------------------ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCD 340 (500)
T ss_pred --------------------cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeC
Confidence 0000011266799999999999999999999999998877766 5788999999999
Q ss_pred HHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 251 VEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 251 ~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
...+..|+..|||..++++ .|.|+.|=
T Consensus 341 psvtd~A~agLnGm~lgd~---~lvvq~A~ 367 (500)
T KOG0120|consen 341 PSVTDQAIAGLNGMQLGDK---KLVVQRAI 367 (500)
T ss_pred CcchhhhhcccchhhhcCc---eeEeehhh
Confidence 9999999999999999966 99998764
No 103
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=5.1e-11 Score=87.87 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
+.+.=.|||.|+....+|++|.+.|..||+|.++.+.++.|. -++||+|+|.+.++|.+|+..+||..|. |.++.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q~v~ 145 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQNVS 145 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CCcee
Confidence 556778999999999999999999999999999999876544 3459999999999999999999999999 99999
Q ss_pred EEEeecCC
Q 023143 110 IELARSNS 117 (286)
Q Consensus 110 v~~~~~~~ 117 (286)
|.|+-...
T Consensus 146 VDw~Fv~g 153 (170)
T KOG0130|consen 146 VDWCFVKG 153 (170)
T ss_pred EEEEEecC
Confidence 99986543
No 104
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=2.8e-11 Score=100.35 Aligned_cols=77 Identities=22% Similarity=0.407 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+..+.+|+|+|+.+.|+.++|++.|++||.|.+|.|. ++ |+||.|...++|..|++.||+.++. |++|+|+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kd---y~fvh~d~~eda~~air~l~~~~~~---gk~m~vq 145 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KD---YAFVHFDRAEDAVEAIRGLDNTEFQ---GKRMHVQ 145 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee---cc---eeEEEEeeccchHHHHhcccccccc---cceeeee
Confidence 4467889999999999999999999999999999999 67 9999999999999999999999999 9999999
Q ss_pred EeecCC
Q 023143 112 LARSNS 117 (286)
Q Consensus 112 ~~~~~~ 117 (286)
++.+..
T Consensus 146 ~stsrl 151 (346)
T KOG0109|consen 146 LSTSRL 151 (346)
T ss_pred eecccc
Confidence 987653
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.1e-10 Score=79.25 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=48.7
Q ss_pred HHHHHHHHh----cCCCceEEE-E-ee-----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 217 EDELKQTLS----VYPGFNMLK-M-RA-----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 217 e~~L~~~F~----~~G~v~~v~-~-~~-----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+++|+++|+ .||.|.++. + +. +.++|||||+|.+.++|.+|+..|||..+. |+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~---gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD---GRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEeC
Confidence 578888888 999999885 3 32 446889999999999999999999999999 4487753
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.15 E-value=9.2e-11 Score=108.66 Aligned_cols=76 Identities=32% Similarity=0.455 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
=++||||++|+..++|.||.++|+.||+|.+|.++ ..++ ||||...+..+|.+|+.+|....+. ++.|+|.|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~---cAfI~M~~RqdA~kalqkl~n~kv~---~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRG---CAFIKMVRRQDAEKALQKLSNVKVA---DKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCc---eeEEEEeehhHHHHHHHHHhccccc---ceeeEEeee
Confidence 45999999999999999999999999999999888 4455 9999999999999999999999998 999999999
Q ss_pred ecC
Q 023143 114 RSN 116 (286)
Q Consensus 114 ~~~ 116 (286)
...
T Consensus 493 ~g~ 495 (894)
T KOG0132|consen 493 VGK 495 (894)
T ss_pred ccC
Confidence 754
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=2.2e-10 Score=77.65 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHhh----cCCCccEEE-EEecC----CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 49 AREIHNLFR----RKPGFDFCQ-LKYTG----RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 49 e~~L~~~F~----~~G~i~~v~-i~~~~----~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
+++|+++|+ .||.|.+|. +.+.. ...++||||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~---gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD---GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEe
Confidence 678888888 999999885 55443 334669999999999999999999999998 998875
No 108
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1e-10 Score=95.88 Aligned_cols=83 Identities=23% Similarity=0.314 Sum_probs=73.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCee--EEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
.+.+.++|||=.||.+..+.||-.+|-+||.|.+.++.+++-.++. |+||.|.|+.+|..||..|||..|. =+.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG---MKRL 357 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG---MKRL 357 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh---hhhh
Confidence 4789999999999999999999999999999999999876544444 9999999999999999999999996 6888
Q ss_pred EEEEeecC
Q 023143 109 HIELARSN 116 (286)
Q Consensus 109 ~v~~~~~~ 116 (286)
+|+.-+.+
T Consensus 358 KVQLKRPk 365 (371)
T KOG0146|consen 358 KVQLKRPK 365 (371)
T ss_pred hhhhcCcc
Confidence 88865543
No 109
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=1.2e-10 Score=90.41 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=69.0
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..||||+||+..++++-|+++|-+.|.|..+++.+ +..+|||||+|.+.|+|+=|+..||+..+.+ ++|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg---rpIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG---RPIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC---ceeEEEe
Confidence 67899999999999999999999999999999987 4467899999999999999999999999994 4999987
Q ss_pred ec
Q 023143 279 AR 280 (286)
Q Consensus 279 ak 280 (286)
+-
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 65
No 110
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.1e-11 Score=96.05 Aligned_cols=78 Identities=18% Similarity=0.362 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
++.-|||+|||+++||.||.-+||.||+|..|.++.+.+ ..+||||..|.+.++-..|+..|||..|. ||.|+|.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---ceeEEee
Confidence 567899999999999999999999999999998884422 23459999999999999999999999999 9999998
Q ss_pred Eee
Q 023143 112 LAR 114 (286)
Q Consensus 112 ~~~ 114 (286)
-..
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 543
No 111
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.9e-10 Score=97.61 Aligned_cols=75 Identities=21% Similarity=0.343 Sum_probs=67.5
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhc-CCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~l-ng~~~~~~~g~~l~V~~ak 280 (286)
..++|||+||...++|.+|++.|.+||+|..+.+...+ +||||+|.+.++|..|.++. |...|. |.+|+|.|++
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~---G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVIN---GFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeec---ceEEEEEeCC
Confidence 48999999999999999999999999999999999877 79999999999999988775 544445 7799999998
Q ss_pred c
Q 023143 281 S 281 (286)
Q Consensus 281 ~ 281 (286)
.
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.5e-09 Score=94.51 Aligned_cols=160 Identities=14% Similarity=0.222 Sum_probs=109.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec----------CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT----------GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----------~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
=++.|||++||.+++|+.|...|..||.+ .+.+. .++.-+|+|..|.++.+...=+..+. ..
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~---~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~-- 329 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV---KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EG-- 329 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce---EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hc--
Confidence 45889999999999999999999999986 22211 23333499999999988766655433 23
Q ss_pred CCCeEEEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 023143 104 SGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGN 183 (286)
Q Consensus 104 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 183 (286)
...+.+.+.......+. ..+ .-|...+. ... +
T Consensus 330 -~~~~yf~vss~~~k~k~-----VQI---rPW~laDs-----~fv-------------~--------------------- 361 (520)
T KOG0129|consen 330 -EGNYYFKVSSPTIKDKE-----VQI---RPWVLADS-----DFV-------------L--------------------- 361 (520)
T ss_pred -ccceEEEEecCcccccc-----eeE---EeeEeccc-----hhh-------------h---------------------
Confidence 55555655443222110 000 00000000 000 0
Q ss_pred CCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHh-cCCCceEEEEee----cCCccEEEEEECCHHHHHHHH
Q 023143 184 AVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLS-VYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAM 258 (286)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~-~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al 258 (286)
.......+.+||||+.||--++.++|..||+ .||.|..|-|-. +.-+|-|=|.|.+.++=.+||
T Consensus 362 -----------d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 362 -----------DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred -----------ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 0111134699999999999999999999999 899999888866 456788999999999999999
Q ss_pred Hh
Q 023143 259 EG 260 (286)
Q Consensus 259 ~~ 260 (286)
++
T Consensus 431 sa 432 (520)
T KOG0129|consen 431 SA 432 (520)
T ss_pred hh
Confidence 87
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=4.1e-10 Score=95.65 Aligned_cols=78 Identities=28% Similarity=0.488 Sum_probs=67.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHH-hCCCccCCCCCCeEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE-LNGVKFDPQSGSVLH 109 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~-l~g~~~~~~~g~~l~ 109 (286)
.....++|||+||-..++|.+|++.|.+||+|.++++. ..++ ||||+|.+.++|+.|.+. ++...|. |+.|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~---CAFv~ftTR~aAE~Aae~~~n~lvI~---G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKG---CAFVTFTTREAAEKAAEKSFNKLVIN---GFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccc---cceeeehhhHHHHHHHHhhcceeeec---ceEEE
Confidence 34557999999999999999999999999999999888 4444 999999999999999975 4556666 99999
Q ss_pred EEEeec
Q 023143 110 IELARS 115 (286)
Q Consensus 110 v~~~~~ 115 (286)
|.|.+.
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999987
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.5e-10 Score=96.23 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=73.5
Q ss_pred CCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 198 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 198 ~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
...||-.+|||--|.+-+|.++|.-||+.||.|..|.+++. .+..||||+|++.+++.+|.=.|++.-|.++ .
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr---R 310 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR---R 310 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc---e
Confidence 44578999999999999999999999999999999999983 3445999999999999999999999999977 9
Q ss_pred EEEEEecc
Q 023143 274 MHIEYARS 281 (286)
Q Consensus 274 l~V~~ak~ 281 (286)
|+|.|+.+
T Consensus 311 IHVDFSQS 318 (479)
T KOG0415|consen 311 IHVDFSQS 318 (479)
T ss_pred EEeehhhh
Confidence 99999754
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=5.1e-11 Score=94.96 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=69.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.....+||||.|+...++|+-|.++|-..|+|..|.|.-...++..||||.|.++.+..-|++.+||..+. ++++.+
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~---~~e~q~ 81 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE---EDEEQR 81 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc---cchhhc
Confidence 34567999999999999999999999999999998887443444449999999999999999999999998 888887
Q ss_pred EEe
Q 023143 111 ELA 113 (286)
Q Consensus 111 ~~~ 113 (286)
.+-
T Consensus 82 ~~r 84 (267)
T KOG4454|consen 82 TLR 84 (267)
T ss_pred ccc
Confidence 753
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.8e-10 Score=95.40 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCee--EEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
.+|.++|||+-|.+-++.++|.-+||.||.|.+|.++.+.+.... ||||+|.+.+++++|+=.|+...|+ ++.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID---DrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID---DRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec---cceEE
Confidence 457799999999999999999999999999999999854433222 9999999999999999999999999 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|.++.+-..
T Consensus 313 VDFSQSVsk 321 (479)
T KOG0415|consen 313 VDFSQSVSK 321 (479)
T ss_pred eehhhhhhh
Confidence 999876443
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.95 E-value=2.6e-09 Score=84.79 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=66.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcC-CCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVY-PGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~-G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
....++|..+|..+.+.++..+|.+| |.|..+++-+ ++++|||||+|++.+.|..|-+.||++-+. ++.|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~---e~lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM---EHLLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh---hheeee
Confidence 47789999999999999999999999 6777888733 889999999999999999999999999999 449988
Q ss_pred EEe
Q 023143 277 EYA 279 (286)
Q Consensus 277 ~~a 279 (286)
.|=
T Consensus 125 ~vm 127 (214)
T KOG4208|consen 125 HVM 127 (214)
T ss_pred EEe
Confidence 873
No 118
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.89 E-value=2.7e-09 Score=98.20 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-------cCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 197 EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-------RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 197 ~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-------~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
+..+|..++|||+||++.++++.|...|+.||.|..|+++- .+.+.||||-|.+..+|++|+..|+|..+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~-- 245 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM-- 245 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee--
Confidence 44467799999999999999999999999999999999875 334569999999999999999999999999
Q ss_pred CCCcEEEEEecc
Q 023143 270 DRGGMHIEYARS 281 (286)
Q Consensus 270 ~g~~l~V~~ak~ 281 (286)
+..+++-|+|.
T Consensus 246 -~~e~K~gWgk~ 256 (877)
T KOG0151|consen 246 -EYEMKLGWGKA 256 (877)
T ss_pred -eeeeeeccccc
Confidence 45999999975
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=5.4e-09 Score=94.11 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
++.|||.+|+..+...+|+++|++||.|.-.+++-. ..+-+.|+||++.+.++|.+||+.|+..+|+ |+.|.|+-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH---GrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH---GRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc---ceeeeeee
Confidence 478999999999999999999999999988888743 3344449999999999999999999999999 99999997
Q ss_pred eec
Q 023143 113 ARS 115 (286)
Q Consensus 113 ~~~ 115 (286)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 764
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.88 E-value=1.9e-08 Score=71.78 Aligned_cols=79 Identities=20% Similarity=0.314 Sum_probs=65.3
Q ss_pred cEEEEccCCCCCCHHHHHHHHhc--CCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCC-CCCcEEE
Q 023143 204 STLFIANLGPNCTEDELKQTLSV--YPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS-DRGGMHI 276 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~--~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~-~g~~l~V 276 (286)
+||.|+|||...|.++|.+++.. .|.+..+.++- ..+.|||||.|.+++.|.+-.+.++|..+... ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 78999999999999999998865 34555555543 56789999999999999999999999999643 3668999
Q ss_pred EEeccc
Q 023143 277 EYARSK 282 (286)
Q Consensus 277 ~~ak~~ 282 (286)
+||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 999753
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.86 E-value=4.4e-09 Score=94.67 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=70.4
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC----CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+++|||.+|...+-..+|+.||++||.|.-.+++++. .+.|+||+|.+.++|.+||+.||-.++. |+.|.|+-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH---GrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH---GRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc---ceeeeeee
Confidence 7999999999999999999999999999999988832 2349999999999999999999999999 55999999
Q ss_pred ecccc
Q 023143 279 ARSKM 283 (286)
Q Consensus 279 ak~~~ 283 (286)
+|+.+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 98753
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=3.8e-10 Score=105.81 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=113.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEE--ecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK--YTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~--~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+..++||+||+..+.+.+|...|+.+|.++.+++. ...+.-+|+|||.|.++++|.+|+...+++.+ |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~----g------ 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF----G------ 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh----h------
Confidence 34679999999999999999999999998777665 11222244999999999999999987666655 4
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
+.
T Consensus 736 --------K~---------------------------------------------------------------------- 737 (881)
T KOG0128|consen 736 --------KI---------------------------------------------------------------------- 737 (881)
T ss_pred --------hh----------------------------------------------------------------------
Confidence 11
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
.|+|+|.|+..|.++|+.+|+.+|.+++++++. ++.+|-|+|.|.+..+|.+++..+.+..+..
T Consensus 738 -------------~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 738 -------------SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred -------------hhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 178999999999999999999999999888766 5667899999999999999999888888875
Q ss_pred C
Q 023143 269 S 269 (286)
Q Consensus 269 ~ 269 (286)
.
T Consensus 805 ~ 805 (881)
T KOG0128|consen 805 N 805 (881)
T ss_pred c
Confidence 5
No 123
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.82 E-value=2.1e-07 Score=82.83 Aligned_cols=225 Identities=15% Similarity=0.113 Sum_probs=111.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccE-EEEEecCCCCee-EEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDF-CQLKYTGRGNQV-VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~~~~-~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...-+|-+++||+.||++||.++|+..-.|.. +-+.+..+++.+ =|||+|.+.+.|+.|+.. |...|- .|-|.|
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG---hRYIEv 176 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIG---HRYIEV 176 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhc---cceEEe
Confidence 34578999999999999999999998876655 334444444322 899999999999999974 444452 344444
Q ss_pred EEeecCCCCCcC--------CCCCCceecccccccccccccCCCCCCCCCCC----CCCCCC--CCCCCCCCCCCCCCcc
Q 023143 111 ELARSNSRKKRK--------PGSGAYVVIDKRTKTEANVQESSSADGDSDTD----EASPVR--NIDSADKGDFVTTQSE 176 (286)
Q Consensus 111 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~p~~~ 176 (286)
--+.... ..+. ...+.+... ...+...+-........... ...... ....+....-....+.
T Consensus 177 F~Ss~~e-~~~~~~~~~~~~~rpGpy~~~---~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~ 252 (510)
T KOG4211|consen 177 FRSSRAE-VKRAAGPGDGRVGRPGPYDRP---GAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYG 252 (510)
T ss_pred ehhHHHH-HHhhccccccccCCCCccccc---cCCccccccccccCCCccccccccccCCccccccCccccccccccccc
Confidence 3222110 0000 000111100 00000000000000000000 000000 0000000000000000
Q ss_pred ccCCCCCCCCccccCC--CCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCH
Q 023143 177 RATDSGNAVAPINEQS--EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEV 251 (286)
Q Consensus 177 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~ 251 (286)
................ ........+.+..+..++||...++.++.++|+..-.+ .|.+.. ++..+=|+|+|.|.
T Consensus 253 ~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~ 331 (510)
T KOG4211|consen 253 GGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATG 331 (510)
T ss_pred cccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccc
Confidence 0000000000000000 11112222234778889999999999999999986555 566544 55556899999999
Q ss_pred HHHHHHHHhcCCCccC
Q 023143 252 EQASIAMEGLQDSTLP 267 (286)
Q Consensus 252 e~A~~Al~~lng~~~~ 267 (286)
++|..|+.. ++..+.
T Consensus 332 edav~Amsk-d~anm~ 346 (510)
T KOG4211|consen 332 EDAVGAMGK-DGANMG 346 (510)
T ss_pred hhhHhhhcc-CCcccC
Confidence 999999966 455544
No 124
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.80 E-value=1.8e-08 Score=90.17 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCe--eEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.+..+|||+|||.++++++|+++|..||.|....|....++.+ .||||+|.+.+++..|+++- -..+. ++++.|
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig---~~kl~V 361 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG---GRKLNV 361 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC---CeeEEE
Confidence 3456799999999999999999999999998888875442222 49999999999999999865 55555 899999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
+--+..
T Consensus 362 eek~~~ 367 (419)
T KOG0116|consen 362 EEKRPG 367 (419)
T ss_pred Eecccc
Confidence 855443
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.79 E-value=8.4e-09 Score=88.77 Aligned_cols=177 Identities=18% Similarity=0.160 Sum_probs=103.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcC----CCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRK----PGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.|-+++||+++++.|+.++|.+- |..+.|-++-...| ..+-|||.|..+++|..|+..-. ..| |+. .|+
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khr-q~i----GqR-YIE 236 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHR-QNI----GQR-YIE 236 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHH-HHH----hHH-HHH
Confidence 37789999999999999999632 23333333312122 12389999999999999997533 223 433 344
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
..++......+ -..+... ... . +......-+.. +
T Consensus 237 lFRSTaaEvqq-----------vlnr~~s----~pL--------------i----------~~~~sp~~p~~-------p 270 (508)
T KOG1365|consen 237 LFRSTAAEVQQ-----------VLNREVS----EPL--------------I----------PGLTSPLLPGG-------P 270 (508)
T ss_pred HHHHhHHHHHH-----------HHHhhcc----ccc--------------c----------CCCCCCCCCCC-------c
Confidence 33332211111 0000000 000 0 00000000000 0
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCce---EEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCc
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFN---MLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDST 265 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~---~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~ 265 (286)
........+..+|-+++||.+.+.|+|.++|..|-.-. -|.|.- ++-.|-|||+|.+.|+|..|....+++.
T Consensus 271 --~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~ 348 (508)
T KOG1365|consen 271 --ARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKL 348 (508)
T ss_pred --cccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhh
Confidence 00011122366788999999999999999999887322 244443 4445689999999999999999988877
Q ss_pred cC
Q 023143 266 LP 267 (286)
Q Consensus 266 ~~ 267 (286)
.+
T Consensus 349 mk 350 (508)
T KOG1365|consen 349 MK 350 (508)
T ss_pred cc
Confidence 75
No 126
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.78 E-value=1.9e-08 Score=92.73 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=70.3
Q ss_pred CCCC-CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC-----CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC
Q 023143 32 DNGI-NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG-----RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (286)
Q Consensus 32 ~~~~-~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (286)
+++. +.|||+||++.++++.|-..|+.||+|..|+|.+.+ +..+.|+||-|.+..+|.+|++.|+|..+. +
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~---~ 246 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM---E 246 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee---e
Confidence 3554 559999999999999999999999999999998531 222339999999999999999999999999 9
Q ss_pred CeEEEEEeec
Q 023143 106 SVLHIELARS 115 (286)
Q Consensus 106 ~~l~v~~~~~ 115 (286)
..+++.|++.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999863
No 127
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.74 E-value=1.2e-08 Score=87.93 Aligned_cols=202 Identities=11% Similarity=0.067 Sum_probs=120.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-----CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-----NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-----~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..|-|.||.+..|.++++.||.-.|.|.++.|.-.-.+ ....|||.|.+..++.-|-+.-|...+ ++.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv----draliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV----DRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee----eeeEEE
Confidence 48999999999999999999999999998887632111 111999999999999999876666666 677666
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
-.+-... .. ...+++.+...+... ......+..-....+...+......+.+|...+..
T Consensus 84 ~p~~~~~---~p-~r~af~~l~~~navp------rll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~----------- 142 (479)
T KOG4676|consen 84 RPYGDEV---IP-DRFAFVELADQNAVP------RLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQA----------- 142 (479)
T ss_pred EecCCCC---Cc-cHHHHHhcCcccccc------cccCCCCccCCCCccccccCCccceecCCCCChHh-----------
Confidence 6443211 11 000110000000000 00000000000000001111111111111111100
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.......-.+|++|.+|...+...++.+.|..+|+|...++..+....+|-|+|...-+...|+.. +|.++.
T Consensus 143 ----~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 143 ----AAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred ----hhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 111111125899999999999999999999999999988887766667888999988887778754 677765
No 128
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=9.5e-09 Score=92.56 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=65.0
Q ss_pred CCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 197 EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 197 ~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
...+.+.++|+|-|||.+|++++|+.+|+.||+|+.|+.-... ++.+||+|-|+.+|++|+++||+.+|.++ .|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~---~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGK---RIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhh---hhc
Confidence 3334468999999999999999999999999999997765532 47999999999999999999999999954 666
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.73 E-value=4.9e-08 Score=81.15 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
..+|+|.|||+.++++||+++|..||.+..+-+-+...+ ..++|=|.|...++|..|++.++|..++ |++|+++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld---G~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD---GRPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC---CceeeeEEe
Confidence 367999999999999999999999998888877765433 2239999999999999999999998888 999999987
Q ss_pred ecCCCCCcC
Q 023143 114 RSNSRKKRK 122 (286)
Q Consensus 114 ~~~~~~~~~ 122 (286)
.......+.
T Consensus 160 ~~~~~~~r~ 168 (243)
T KOG0533|consen 160 SSPSQSKRL 168 (243)
T ss_pred cCccccccc
Confidence 765544433
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.72 E-value=1.7e-08 Score=86.78 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=124.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEe--cCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY--TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
....+.|++++...+.+.++..++..+|.+..+.+.. ..-..++++.|.|...+.+..|+.......+. ++.+..
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~---~~~~~~ 162 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLD---GNKGEK 162 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccc---cccccC
Confidence 4578899999999999999999999999765554431 11223349999999999999999865554553 444333
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
-...... .... . +.
T Consensus 163 dl~~~~~---~~~~-n------~~-------------------------------------------------------- 176 (285)
T KOG4210|consen 163 DLNTRRG---LRPK-N------KL-------------------------------------------------------- 176 (285)
T ss_pred ccccccc---cccc-c------hh--------------------------------------------------------
Confidence 3222111 0000 0 00
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
......+..+.++++|++.++++++|+..|..+|.|..+++.. +..++||+|+|.+...+..++.. +...+
T Consensus 177 ----~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~ 251 (285)
T KOG4210|consen 177 ----SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI 251 (285)
T ss_pred ----cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc
Confidence 0000112244455999999999999999999999999999987 55677999999999999999988 88888
Q ss_pred CCCCCCcEEEEEeccc
Q 023143 267 PSSDRGGMHIEYARSK 282 (286)
Q Consensus 267 ~~~~g~~l~V~~ak~~ 282 (286)
+ ++++.|.+.+..
T Consensus 252 ~---~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 252 G---GRPLRLEEDEPR 264 (285)
T ss_pred c---CcccccccCCCC
Confidence 8 558998887654
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.70 E-value=7.6e-08 Score=80.01 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=68.0
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..+.|+|.|||..|+++||+++|..||.++.+-+.. +.+.|+|=|.|...++|.+|++.+||..+. |+.|++..
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld---G~~mk~~~ 158 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD---GRPMKIEI 158 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC---CceeeeEE
Confidence 458899999999999999999999999998887766 666789999999999999999999998888 55898877
Q ss_pred ecc
Q 023143 279 ARS 281 (286)
Q Consensus 279 ak~ 281 (286)
.-+
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 443
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.68 E-value=2e-07 Score=66.54 Aligned_cols=80 Identities=25% Similarity=0.418 Sum_probs=64.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc--CCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC--CCeEE
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRR--KPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS--GSVLH 109 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~--g~~l~ 109 (286)
+||+|+|+|...|.++|.+++.. .|..+.+-+.++ .+-+.|||||.|.+++.|.+..+.++|..+ +.. .+...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w-~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW-PNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc-ccCCCCcEEE
Confidence 58999999999999999888754 366666666544 455677999999999999999999999999 442 56777
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|.||+-+
T Consensus 81 i~yAriQ 87 (97)
T PF04059_consen 81 ISYARIQ 87 (97)
T ss_pred EehhHhh
Confidence 7777643
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=75.70 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcC-CCccEEEEE--ecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRK-PGFDFCQLK--YTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~--~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
......++|+.+|..+.+.+|...|..| |.|..+++- .+..+.++||||+|.+++.|.-|-+.||+..|. ++.|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~---e~lL 122 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM---EHLL 122 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh---hhee
Confidence 4455679999999999999999999999 556666662 234445669999999999999999999999998 9999
Q ss_pred EEEEeec
Q 023143 109 HIELARS 115 (286)
Q Consensus 109 ~v~~~~~ 115 (286)
.+.+-..
T Consensus 123 ~c~vmpp 129 (214)
T KOG4208|consen 123 ECHVMPP 129 (214)
T ss_pred eeEEeCc
Confidence 9987654
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.65 E-value=8.8e-08 Score=78.41 Aligned_cols=73 Identities=18% Similarity=0.306 Sum_probs=65.5
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
-..||.+-|...++.+-|-..|.+|..+...++++ ++++||+||.|.+..++..|+..|||+-++.+ +|++.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr---piklRk 266 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR---PIKLRK 266 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc---hhHhhh
Confidence 55699999999999999999999999988877766 77899999999999999999999999999855 777644
No 135
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=4.7e-08 Score=79.55 Aligned_cols=73 Identities=22% Similarity=0.309 Sum_probs=66.4
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecccc
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~~ 283 (286)
..+||++||..+.+.+|..+|..||.+.++.|..+. +||+|++..+|..|+..+||+.+.+. .+.|+|++.+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf----~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGF----GFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeeccc----ceeccCchhhhhcccchhcCceecce---eeeeecccccc
Confidence 358999999999999999999999999999887764 79999999999999999999999966 69999998653
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.53 E-value=2.6e-06 Score=78.85 Aligned_cols=72 Identities=15% Similarity=0.143 Sum_probs=59.6
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCce-EEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFN-MLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~-~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+++|-+.|+|++++.+||.++|..|--+- +|++.. +.-.|-|-|-|++.++|.+|...|++..|+.+ .++|.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr---~V~l~ 942 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNR---VVSLR 942 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccce---eEEEE
Confidence 45888999999999999999999996543 455544 33345799999999999999999999999966 77664
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.50 E-value=5.6e-07 Score=80.79 Aligned_cols=75 Identities=19% Similarity=0.285 Sum_probs=62.7
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..+|||+|||.++++.+|+++|..||.|+...|.. +.+..||||+|.+..+++.||++- -..++ +++|.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig---~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG---GRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC---CeeEEEEe
Confidence 56699999999999999999999999999888766 333369999999999999999884 55555 55888886
Q ss_pred ecc
Q 023143 279 ARS 281 (286)
Q Consensus 279 ak~ 281 (286)
-+.
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 554
No 138
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.49 E-value=7e-07 Score=60.85 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=46.6
Q ss_pred cEEEEccCCCCCCHHHH----HHHHhcCCC-ceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 204 STLFIANLGPNCTEDEL----KQTLSVYPG-FNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L----~~~F~~~G~-v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+.|+|.|||.+.+-..+ +.|+..+|+ |..| . .+.|+|.|.+.+.|.+|...|+|..+. |+.|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVf---G~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVF---GNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS---SS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccc---cceEEEEE
Confidence 46999999998887554 556667764 4443 1 267999999999999999999999999 66999999
Q ss_pred eccc
Q 023143 279 ARSK 282 (286)
Q Consensus 279 ak~~ 282 (286)
...+
T Consensus 74 ~~~~ 77 (90)
T PF11608_consen 74 SPKN 77 (90)
T ss_dssp S--S
T ss_pred cCCc
Confidence 8554
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.48 E-value=3.1e-07 Score=67.09 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=40.6
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
+..|.|.+++..++.++|++.|+.||.|..|.+..+. ..|+|+|.+.++|++|++.+.-.
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhc
Confidence 3579999999999999999999999999999998876 78999999999999999887443
No 140
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=7.8e-08 Score=77.03 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=66.1
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC--CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~--~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
--+||||.|+-..++||-|.++|-+-|.|.+|.|..++ ...||||.|.+..+..-|++.|||-.+.+. .++|++
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED---EEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc---hhhccc
Confidence 37899999999999999999999999999999998833 223999999999999999999999999944 888876
No 141
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.44 E-value=7.1e-07 Score=76.21 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=68.2
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCce--------EEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFN--------MLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~--------~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
++.|||+|||.++|.+++.++|+++|.|. .|+|.+ +.-+|-|.+.|.-.++..-|+..|++..+. |
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r---g 210 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR---G 210 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc---C
Confidence 77799999999999999999999999664 466665 556789999999999999999999999999 6
Q ss_pred CcEEEEEecccc
Q 023143 272 GGMHIEYARSKM 283 (286)
Q Consensus 272 ~~l~V~~ak~~~ 283 (286)
+.|+|+-|+=.|
T Consensus 211 ~~~rVerAkfq~ 222 (382)
T KOG1548|consen 211 KKLRVERAKFQM 222 (382)
T ss_pred cEEEEehhhhhh
Confidence 699999887544
No 142
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.43 E-value=3e-08 Score=86.46 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=115.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCc-cCCCCCCeEEEEEee
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVK-FDPQSGSVLHIELAR 114 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~-~~~~~g~~l~v~~~~ 114 (286)
+.+|++||.+.++.++|..+|.....-.+-.+++. .+ ||||...+...|.+|++.++|.. +. |+.+.++.+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-~g---yafvd~pdq~wa~kaie~~sgk~elq---Gkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-SG---YAFVDCPDQQWANKAIETLSGKVELQ---GKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-cc---eeeccCCchhhhhhhHHhhchhhhhc---Cceeeccchh
Confidence 46899999999999999999986522111122222 33 99999999999999999999864 44 7777777543
Q ss_pred cCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCC
Q 023143 115 SNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEK 194 (286)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (286)
.+..
T Consensus 75 ~kkq---------------------------------------------------------------------------- 78 (584)
T KOG2193|consen 75 PKKQ---------------------------------------------------------------------------- 78 (584)
T ss_pred hHHH----------------------------------------------------------------------------
Confidence 2111
Q ss_pred CCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCC-ccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 195 PYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG-MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 195 ~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~-~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
.++.+-|+|+|.....+.|-.|...||.|..|......+ ....-|+|.+.+.+..||..+||..+... .
T Consensus 79 -------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~ 148 (584)
T KOG2193|consen 79 -------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---H 148 (584)
T ss_pred -------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---h
Confidence 144477999999999999999999999999887655332 12556889999999999999999999854 7
Q ss_pred EEEEEe
Q 023143 274 MHIEYA 279 (286)
Q Consensus 274 l~V~~a 279 (286)
++|.|-
T Consensus 149 ~k~~Yi 154 (584)
T KOG2193|consen 149 LKVGYI 154 (584)
T ss_pred hhcccC
Confidence 787774
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.43 E-value=4.2e-07 Score=75.70 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=69.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..+.+||+|++..+|-+++...|+.+|.+..+.+.. +..++|+||+|.+.+.++.|+. |||..|. |..+.|+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~---~~~i~vt 175 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP---GPAIEVT 175 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc---cccceee
Confidence 478899999999999999999999999998777776 3467799999999999999998 9999999 5599999
Q ss_pred Eeccc
Q 023143 278 YARSK 282 (286)
Q Consensus 278 ~ak~~ 282 (286)
+.+.+
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 98765
No 144
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.37 E-value=3.2e-06 Score=57.69 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=47.6
Q ss_pred CeEEEcCCCCCCCHHHH----HHHhhcCCC-ccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 36 NTLFVSGLPDDVRAREI----HNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L----~~~F~~~G~-i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..|+|.|||.+.+...| +.++.-+|. |..| . .+ .|.|.|.+.+.|.+|.+.|+|..+. |.+|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~---tAilrF~~~~~A~RA~KRmegEdVf---G~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GG---TAILRFPNQEFAERAQKRMEGEDVF---GNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT----EEEEESSHHHHHHHHHHHTT--SS---SS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CC---EEEEEeCCHHHHHHHHHhhcccccc---cceEEE
Confidence 46999999999887755 677778876 4333 1 34 8999999999999999999999998 999999
Q ss_pred EEeec
Q 023143 111 ELARS 115 (286)
Q Consensus 111 ~~~~~ 115 (286)
.+...
T Consensus 72 ~~~~~ 76 (90)
T PF11608_consen 72 SFSPK 76 (90)
T ss_dssp ESS--
T ss_pred EEcCC
Confidence 98754
No 145
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.23 E-value=2.7e-06 Score=70.97 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...+.+.+||+|+.+.+|.+++...|+-||.|..+.+... ....++||||+|.+.+.+..|+. |+|..|. |+.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~---~~~i 172 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP---GPAI 172 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc---cccc
Confidence 3556788999999999999999999999999986666622 11245599999999999999999 9999998 9999
Q ss_pred EEEEeecCC
Q 023143 109 HIELARSNS 117 (286)
Q Consensus 109 ~v~~~~~~~ 117 (286)
.+.+.+.+.
T Consensus 173 ~vt~~r~~~ 181 (231)
T KOG4209|consen 173 EVTLKRTNV 181 (231)
T ss_pred eeeeeeeec
Confidence 999988773
No 146
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.20 E-value=1.9e-06 Score=74.54 Aligned_cols=79 Identities=18% Similarity=0.282 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..+.|||++||.++++++|++.|++||.|..+.+.++... .++|+||.|.+.+++.+++. ..-..|. |+.+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~---gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN---GKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec---CceeeEe
Confidence 3568999999999999999999999999988888765333 23399999999999888875 4444554 8888888
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
-|...
T Consensus 172 rA~pk 176 (311)
T KOG4205|consen 172 RAIPK 176 (311)
T ss_pred eccch
Confidence 77644
No 147
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.13 E-value=8.1e-06 Score=59.61 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=43.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCC-----ccCCCCCCeEEE
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGV-----KFDPQSGSVLHI 110 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~-----~~~~~~g~~l~v 110 (286)
..|.|.|++..++-++|+++|+.||.|..|.+. .+.. -|||.|.+.++|++|++.+... .+. +..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~---~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~---~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDT---EGYVRFKTPEAAQKALEKLKEANDGKLKIK---GKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-S---EEEEEESS---HHHHHHHHHHTTTS-B-TT---SSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCC---EEEEEECCcchHHHHHHHHHhccCCceEEc---CceEEE
Confidence 468999999999999999999999999887776 3333 9999999999999999876433 333 666666
Q ss_pred EEe
Q 023143 111 ELA 113 (286)
Q Consensus 111 ~~~ 113 (286)
+..
T Consensus 75 ~vL 77 (105)
T PF08777_consen 75 EVL 77 (105)
T ss_dssp E--
T ss_pred EEC
Confidence 543
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.13 E-value=2.4e-05 Score=72.72 Aligned_cols=194 Identities=7% Similarity=-0.070 Sum_probs=117.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEE--ecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK--YTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~--~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+...+-+++.++...+.|++++|-.. .|..+.|. .-.++..+-++|+|....++.+|++..+...+ .|.+.+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~----~R~~q~~ 384 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDV----NRPFQTG 384 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhh----hcceeec
Confidence 44567788999999999999998543 24455444 22344445999999999999999986555544 6777666
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
.+-........ ... ... ........+...+.. +.+...
T Consensus 385 P~g~~~~~~a~----~~~----------------~~~--~~~~~~~~hg~p~~~--------------------pr~~~~ 422 (944)
T KOG4307|consen 385 PPGNLGRNGAP----PFQ----------------AGV--PPPVIQNNHGRPIAP--------------------PRAMVR 422 (944)
T ss_pred CCCccccccCc----ccc----------------ccC--CCCcccccCCCCCCC--------------------cccccC
Confidence 44322111111 000 000 000000000000000 000000
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceE-EEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNM-LKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~-v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.+...-...+-+.+|||..||..+++.++.+.|+..-.|++ +.|-+ ++-++.|||.|..++++.+|..--+.+-++
T Consensus 423 ~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G 502 (944)
T KOG4307|consen 423 PGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG 502 (944)
T ss_pred CCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccC
Confidence 01111111234889999999999999999999998777776 44433 556679999999999999988766665555
Q ss_pred CCCCCcEEEE
Q 023143 268 SSDRGGMHIE 277 (286)
Q Consensus 268 ~~~g~~l~V~ 277 (286)
-+ .|+|.
T Consensus 503 ~r---~irv~ 509 (944)
T KOG4307|consen 503 HR---IIRVD 509 (944)
T ss_pred ce---EEEee
Confidence 33 67764
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.05 E-value=4.7e-06 Score=68.47 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=63.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCC--eeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.-+||.+.|.-+++.+.|-..|++|-.....++..+.|.. ++|+||.|.++.++.+||+.|+|..+. .|++++.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg---srpiklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG---SRPIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc---cchhHhh
Confidence 3679999999999999999999999998777776444433 339999999999999999999999996 7887776
No 150
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.93 E-value=0.00023 Score=62.03 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=93.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcC----CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRK----PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
.+++..|-.++||+.-+..+|-.+|.-- |.+.-| +. ..+.+.++|.|.|.++|.-.-|++. +...+. ++.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKO-G~-~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g---~ry 130 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALC-LN-AQGRRNGEALVRFVDPEGRDLALKR-HKHHMG---TRY 130 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeee-eh-hhhccccceEEEecCchhhhhhhHh-hhhhcc---CCc
Confidence 4556678899999999999999998643 222111 11 1122234999999999888888863 233332 444
Q ss_pred EEEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCc
Q 023143 108 LHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAP 187 (286)
Q Consensus 108 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 187 (286)
+.|--+.....-+.. .+... + ..+.
T Consensus 131 ievYka~ge~f~~ia--gg~s~-------------------------e----------------------------~~~f 155 (508)
T KOG1365|consen 131 IEVYKATGEEFLKIA--GGTSN-------------------------E----------------------------AAPF 155 (508)
T ss_pred eeeeccCchhheEec--CCccc-------------------------c----------------------------CCCC
Confidence 444322211111000 00000 0 0000
Q ss_pred cccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCC----CceEEEEee---cCCccEEEEEECCHHHHHHHHHh
Q 023143 188 INEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP----GFNMLKMRA---RGGMPVAFADFEEVEQASIAMEG 260 (286)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G----~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~ 260 (286)
.... .--.|-+++||+++++.++.++|.... .++.|.+++ ++-.|-|||.|...++|+.|+..
T Consensus 156 --------lsk~--~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 156 --------LSKE--NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred --------CCcc--cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 0000 123355789999999999999997332 334444444 55567899999999999999976
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.84 E-value=3.8e-05 Score=65.58 Aligned_cols=78 Identities=22% Similarity=0.394 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCCHHH----H--HHHhhcCCCccEEEEEecCCC-Cee----EEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 35 INTLFVSGLPDDVRARE----I--HNLFRRKPGFDFCQLKYTGRG-NQV----VAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~~~~~-~~~----~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
-+-+||-+||..+..++ | .++|++||.|..|.+..+... +.. -.||+|.+.++|.+||...+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D-- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD-- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--
Confidence 35689999999986665 3 589999999988877632211 111 3499999999999999999999999
Q ss_pred CCCeEEEEEeec
Q 023143 104 SGSVLHIELARS 115 (286)
Q Consensus 104 ~g~~l~v~~~~~ 115 (286)
||.|+..|...
T Consensus 192 -Gr~lkatYGTT 202 (480)
T COG5175 192 -GRVLKATYGTT 202 (480)
T ss_pred -CceEeeecCch
Confidence 99999998763
No 152
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.82 E-value=4.6e-05 Score=48.25 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=42.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHH
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAAL 92 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~ 92 (286)
+.|-|.|.+.+..+..|+ .|..||+|..+.+. ...+ +++|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~-~~~~---~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVP-ESTN---WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcC-CCCc---EEEEEECCHHHHHhhC
Confidence 568899999887765555 88899999987666 2344 9999999999999985
No 153
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=6.1e-05 Score=47.68 Aligned_cols=52 Identities=8% Similarity=0.210 Sum_probs=42.8
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHH
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAM 258 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al 258 (286)
+.|-|.+.+.+.. ++++..|..||+|.++.+.... .+.+|+|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 5678888887755 5566699999999988777433 79999999999999985
No 154
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.75 E-value=2.1e-05 Score=64.78 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=59.6
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec------------CCcc----EEEEEECCHHHHHHHHHhcCCCc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR------------GGMP----VAFADFEEVEQASIAMEGLQDST 265 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~------------~~~~----~afV~f~~~e~A~~Al~~lng~~ 265 (286)
..-+||++|||+.+.-..|++||++||.|-+|.|.+. .++. =|+|+|.+...|..+.+.|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4678999999999999999999999999999998761 1111 38999999999999999999999
Q ss_pred cCCC
Q 023143 266 LPSS 269 (286)
Q Consensus 266 ~~~~ 269 (286)
|+++
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9965
No 155
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.70 E-value=3e-05 Score=68.22 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec---------C--------CccEEEEEECCHHHHHHHHHhcCC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---------G--------GMPVAFADFEEVEQASIAMEGLQD 263 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~---------~--------~~~~afV~f~~~e~A~~Al~~lng 263 (286)
.++++|.+.|||.+-.-+.|.+||+.+|.|+.|++..- . .+-||+|+|++.+.|.+|.+.||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 37999999999998888999999999999999998752 1 134899999999999999999866
Q ss_pred CccC
Q 023143 264 STLP 267 (286)
Q Consensus 264 ~~~~ 267 (286)
..-.
T Consensus 309 e~~w 312 (484)
T KOG1855|consen 309 EQNW 312 (484)
T ss_pred hhhh
Confidence 5544
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.66 E-value=0.00022 Score=51.31 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=55.4
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEE-E----------eecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLK-M----------RARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~-~----------~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
.+.|.|-+.|.. ....+.+.|++||.|.+.. + ....+..+.-|+|+++.+|.+||.. ||..+.+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~-- 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGS-- 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTC--
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCc--
Confidence 556778888888 6778889999999987664 0 1122336999999999999999976 99999822
Q ss_pred CcEEEEEeccccCCC
Q 023143 272 GGMHIEYARSKMRKL 286 (286)
Q Consensus 272 ~~l~V~~ak~~~~~~ 286 (286)
-.+-|.|+++..++|
T Consensus 82 ~mvGV~~~~~~~~~~ 96 (100)
T PF05172_consen 82 LMVGVKPCDPADEQL 96 (100)
T ss_dssp EEEEEEE-HHHHCCC
T ss_pred EEEEEEEcHHhHHHH
Confidence 255588887665543
No 157
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.64 E-value=3.6e-05 Score=67.80 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=57.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--------CCCC-------eeEEEEEEcCHHHHHHHHHHhCC
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--------GRGN-------QVVAFATFVNHQTAVAALHELNG 97 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--------~~~~-------~~~aFV~F~~~~~A~~A~~~l~g 97 (286)
-++++|.+-|||.+-..+.|.++|+.+|.|..|+|.-. +..+ +-||+|+|.+.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47899999999999888999999999999999999722 1111 22999999999999999998865
Q ss_pred CccC
Q 023143 98 VKFD 101 (286)
Q Consensus 98 ~~~~ 101 (286)
..-|
T Consensus 309 e~~w 312 (484)
T KOG1855|consen 309 EQNW 312 (484)
T ss_pred hhhh
Confidence 4443
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.63 E-value=0.00011 Score=62.80 Aligned_cols=78 Identities=12% Similarity=0.291 Sum_probs=62.5
Q ss_pred ccEEEEccCCCCCCHHHH------HHHHhcCCCceEEEEeecCC-----cc--EEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 203 CSTLFIANLGPNCTEDEL------KQTLSVYPGFNMLKMRARGG-----MP--VAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L------~~~F~~~G~v~~v~~~~~~~-----~~--~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
..-+||-+|++.+..|++ .++|++||.|+.+.+-+..+ .+ =.||.|.+.|+|.+||.+.+|..++
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D-- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD-- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc--
Confidence 455899999988877773 34999999999887765221 11 2499999999999999999999998
Q ss_pred CCCcEEEEEecccc
Q 023143 270 DRGGMHIEYARSKM 283 (286)
Q Consensus 270 ~g~~l~V~~ak~~~ 283 (286)
|+.|+.+|+..|.
T Consensus 192 -Gr~lkatYGTTKY 204 (480)
T COG5175 192 -GRVLKATYGTTKY 204 (480)
T ss_pred -CceEeeecCchHH
Confidence 6699999987663
No 159
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.59 E-value=9.6e-05 Score=67.64 Aligned_cols=80 Identities=15% Similarity=0.265 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-CCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRR-KPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++.|+|.||=..+|.-+|+.++.+ .|.|++..|. .-+. .|||.|.+.++|.+.+++|+|..|-.+..+.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKS---hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKS---HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-Hhhc---ceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 456889999999999999999999995 5556555443 1133 8999999999999999999999995447899999
Q ss_pred EEeec
Q 023143 111 ELARS 115 (286)
Q Consensus 111 ~~~~~ 115 (286)
.|...
T Consensus 517 df~~~ 521 (718)
T KOG2416|consen 517 DFVRA 521 (718)
T ss_pred eecch
Confidence 98764
No 160
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.45 E-value=0.00073 Score=51.63 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=53.1
Q ss_pred CCCCCccEEEEccCC-----CCCCH----HHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 198 GGVQPCSTLFIANLG-----PNCTE----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 198 ~~~~~~~~L~v~NL~-----~~~te----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
...||--|+.|+=+. ..... .+|.+.|..||++.-+++..+. -+|.|.+-++|.+|+ .|+|.++.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~----mwVTF~dg~sALaal-s~dg~~v~- 95 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT----MWVTFRDGQSALAAL-SLDGIQVN- 95 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC----EEEEESSCHHHHHHH-HGCCSEET-
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe----EEEEECccHHHHHHH-ccCCcEEC-
Confidence 345677778775444 22333 3777899999999988888876 999999999999999 56999999
Q ss_pred CCCCcEEEEEe
Q 023143 269 SDRGGMHIEYA 279 (286)
Q Consensus 269 ~~g~~l~V~~a 279 (286)
|+.|+|+..
T Consensus 96 --g~~l~i~LK 104 (146)
T PF08952_consen 96 --GRTLKIRLK 104 (146)
T ss_dssp --TEEEEEEE-
T ss_pred --CEEEEEEeC
Confidence 559999863
No 161
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.41 E-value=0.00023 Score=61.61 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=67.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceE--------EEE----eecCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--------LKM----RARGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~--------v~~----~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.....++||-+|+.++++++|.+.|.+.|.|.. +.+ .+...|+-|.|.|++...|+.|++-++++.+-
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345788999999999999999999999986642 122 22556789999999999999999999999999
Q ss_pred CCCCCcEEEEEecccc
Q 023143 268 SSDRGGMHIEYARSKM 283 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~~ 283 (286)
++.|+|.+|..+.
T Consensus 143 ---gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 ---GNTIKVSLAERRT 155 (351)
T ss_pred ---CCCchhhhhhhcc
Confidence 5699999987653
No 162
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.41 E-value=0.00018 Score=65.91 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=66.8
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.+++.+|+|.||---+|.-.|+.++..-| .|...-| ++-+.-|||.|.+.++|..-..+|||..+...+.+.|.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 45689999999999999999999999555 5555422 23335699999999999999999999999888888999999
Q ss_pred ecc
Q 023143 279 ARS 281 (286)
Q Consensus 279 ak~ 281 (286)
+..
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 764
No 163
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00027 Score=64.46 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=57.5
Q ss_pred ccEEEEccCCC--CCCHH----HHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 203 CSTLFIANLGP--NCTED----ELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 203 ~~~L~v~NL~~--~~te~----~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
-++|+|-|+|. ..-.+ -|..+|+++|.+..+.+.. +..+||.|++|.+..+|+.|+..|||+.+.- .++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk--nHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK--NHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc--cce
Confidence 67899999995 22233 3445999999999888874 6678999999999999999999999999962 235
Q ss_pred EEEE
Q 023143 274 MHIE 277 (286)
Q Consensus 274 l~V~ 277 (286)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5443
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.34 E-value=0.00016 Score=59.68 Aligned_cols=68 Identities=13% Similarity=0.222 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec----------CCCCee----EEEEEEcCHHHHHHHHHHhCCCc
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT----------GRGNQV----VAFATFVNHQTAVAALHELNGVK 99 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----------~~~~~~----~aFV~F~~~~~A~~A~~~l~g~~ 99 (286)
..-.||++|+|+.++-..|+++|+.||.|..|-+... .+++.. =|.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3467999999999999999999999999998877511 111111 57899999999999999999999
Q ss_pred cC
Q 023143 100 FD 101 (286)
Q Consensus 100 ~~ 101 (286)
|.
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 95
No 165
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.31 E-value=0.0007 Score=57.00 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=58.3
Q ss_pred CccEEEEccCCC--CC---CHHHHHHHHhcCCCceEEEEeecCCcc-----EEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 202 PCSTLFIANLGP--NC---TEDELKQTLSVYPGFNMLKMRARGGMP-----VAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 202 ~~~~L~v~NL~~--~~---te~~L~~~F~~~G~v~~v~~~~~~~~~-----~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
++++|.++|+=. .+ -++++++.|++||.|..|.+....+-. ..||+|..+++|.+|+-.|||+=|+ |
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG---G 356 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG---G 356 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec---c
Confidence 466688887752 33 346788899999999988877632212 6999999999999999999999999 5
Q ss_pred CcEEEEE
Q 023143 272 GGMHIEY 278 (286)
Q Consensus 272 ~~l~V~~ 278 (286)
+.++-+|
T Consensus 357 r~v~A~F 363 (378)
T KOG1996|consen 357 RVVSACF 363 (378)
T ss_pred eeeehee
Confidence 5888776
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.30 E-value=0.00012 Score=60.58 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=48.9
Q ss_pred HHHHHHHh-cCCCceEEEEeecC---CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 218 DELKQTLS-VYPGFNMLKMRARG---GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 218 ~~L~~~F~-~~G~v~~v~~~~~~---~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
|+|...|+ +||+|+.+.+-.+. -+|-++|.|...++|++|++.|||..|. |++|+.+++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~---G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN---GRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc---CCcceeeec
Confidence 56666666 99999988776622 3467999999999999999999999999 559998875
No 167
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.28 E-value=0.0013 Score=45.06 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=40.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCC
Q 023143 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97 (286)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g 97 (286)
||--..|..+...||.++|++||.|.--.|. .. .|||...+.+.|..|+..+..
T Consensus 11 VFhltFPkeWK~~DI~qlFspfG~I~VsWi~---dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLTFPKEWKTSDIYQLFSPFGQIYVSWIN---DT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE--TT--HHHHHHHCCCCCCEEEEEEC---TT---EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEeCchHhhhhhHHHHhccCCcEEEEEEc---CC---cEEEEeecHHHHHHHHHHhcc
Confidence 5444499999999999999999998433333 44 999999999999999988764
No 168
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.28 E-value=0.0003 Score=60.72 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCCCCCeEE-EcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 30 QQDNGINTLF-VSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 30 ~~~~~~~~lf-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
-...++.++| |+||++.+++++|++.|..+|.|..+++.-.... ..++|||.|.+..++..++.. +...+. ++
T Consensus 179 ~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~---~~ 254 (285)
T KOG4210|consen 179 LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG---GR 254 (285)
T ss_pred cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc---Cc
Confidence 3455666677 9999999999999999999999998888732222 233999999999999999987 888887 99
Q ss_pred eEEEEEeecC
Q 023143 107 VLHIELARSN 116 (286)
Q Consensus 107 ~l~v~~~~~~ 116 (286)
++.+++....
T Consensus 255 ~~~~~~~~~~ 264 (285)
T KOG4210|consen 255 PLRLEEDEPR 264 (285)
T ss_pred ccccccCCCC
Confidence 9999977543
No 169
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.17 E-value=0.00063 Score=65.31 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.+.+++.+||++|..++....|...|..||.|..|.+. .+ +.||+|+|.+.+.|..|++.|-|..| ..-.+.+.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hg---q~yayi~yes~~~aq~a~~~~rgap~-G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HG---QPYAYIQYESPPAAQAATHDMRGAPL-GGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cC---CcceeeecccCccchhhHHHHhcCcC-CCCCccccc
Confidence 45678999999999999999999999999999887666 23 34999999999999999999999999 454577888
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
.++..-
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 887643
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.11 E-value=0.0021 Score=46.29 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=49.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEE------------EEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQ------------LKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~------------i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
..+.|-|=+.|.. ....+-+.|+.||.|.+.. -...+.+ +--|+|.++.+|.+||. -||..+.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~N---Wi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGN---WIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTT---EEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCC---EEEEECCCHHHHHHHHH-hCCeEEc
Confidence 3456888899988 5667778999999997764 2234455 99999999999999996 7899885
Q ss_pred CCCCCeEE-EEEe
Q 023143 102 PQSGSVLH-IELA 113 (286)
Q Consensus 102 ~~~g~~l~-v~~~ 113 (286)
|.-|. |.+.
T Consensus 80 ---g~~mvGV~~~ 89 (100)
T PF05172_consen 80 ---GSLMVGVKPC 89 (100)
T ss_dssp ---TCEEEEEEE-
T ss_pred ---CcEEEEEEEc
Confidence 54432 4444
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.00 E-value=0.00059 Score=58.78 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=66.7
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCC--CceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G--~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..-++||+||-+-+|++||.+.....| .+.++++.. +++||||+|-..+..+..+.++.|-.+.|. |.++..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH--GQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH--GQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec--CCCCee
Confidence 356799999999999999999998877 344555544 778999999999999999999999999998 335777
Q ss_pred EEEeccccCC
Q 023143 276 IEYARSKMRK 285 (286)
Q Consensus 276 V~~ak~~~~~ 285 (286)
++|-|....+
T Consensus 157 ~~~NK~~~ak 166 (498)
T KOG4849|consen 157 LSYNKTNQAK 166 (498)
T ss_pred eccchhhHHH
Confidence 7887766544
No 172
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.99 E-value=0.008 Score=49.91 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCee-EEEEEEcCHHHHHHHHHHhCCCccC-CCCCCeEEEEEe
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV-VAFATFVNHQTAVAALHELNGVKFD-PQSGSVLHIELA 113 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~-~aFV~F~~~~~A~~A~~~l~g~~~~-~~~g~~l~v~~~ 113 (286)
..|+|.||+..++-|.|..-|+.||.|+...+..+.+++.. =++|.|...-.|.+|.+.+.-.-+. .-++++..|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999988877766555433 8999999999999999887322221 335777777654
Q ss_pred e
Q 023143 114 R 114 (286)
Q Consensus 114 ~ 114 (286)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 173
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.94 E-value=0.0055 Score=46.34 Aligned_cols=76 Identities=14% Similarity=0.220 Sum_probs=59.6
Q ss_pred CCCCCCeEEEcCCCCCC-CHHHHH---HHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 31 QDNGINTLFVSGLPDDV-RAREIH---NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~-te~~L~---~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
.+.+..||.|+=|...+ ..+||+ ..++.||+|++|.+. ++. .|.|.|.+..+|-+|+.+++...- |.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c--Grq---savVvF~d~~SAC~Av~Af~s~~p----gt 152 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC--GRQ---SAVVVFKDITSACKAVSAFQSRAP----GT 152 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec--CCc---eEEEEehhhHHHHHHHHhhcCCCC----Cc
Confidence 36678999998887775 344555 457899999988766 233 899999999999999999888655 88
Q ss_pred eEEEEEeec
Q 023143 107 VLHIELARS 115 (286)
Q Consensus 107 ~l~v~~~~~ 115 (286)
.++..|.+.
T Consensus 153 m~qCsWqqr 161 (166)
T PF15023_consen 153 MFQCSWQQR 161 (166)
T ss_pred eEEeecccc
Confidence 888887653
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.92 E-value=0.003 Score=53.34 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCccEEEEEecCC---CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeec
Q 023143 49 AREIHNLFRRKPGFDFCQLKYTGR---GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (286)
Q Consensus 49 e~~L~~~F~~~G~i~~v~i~~~~~---~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~ 115 (286)
++++++.|++||.|..|.|..... ....--||+|...++|.+|+-.|||+.|. ||.++..|...
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG---Gr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG---GRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec---ceeeeheeccH
Confidence 457789999999999887763211 11227899999999999999999999998 99988887654
No 175
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.90 E-value=4.9e-05 Score=72.25 Aligned_cols=157 Identities=14% Similarity=0.146 Sum_probs=102.0
Q ss_pred CCeEEEcCCCCCCCHH-HHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 35 INTLFVSGLPDDVRAR-EIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~-~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.+...+.|+-+..... ..+..|..+|.|+.|++.-.+.. .++++++.+....+++.|.. ..|..+. ++...+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a---~~~~av~ 646 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALA---NRSAAVG 646 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccC---CccccCC
Confidence 3456677777766555 56899999999998877631111 12278888888877777764 3333343 3333333
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
.+...... . ..
T Consensus 647 ~ad~~~~~--~----------------~~--------------------------------------------------- 657 (881)
T KOG0128|consen 647 LADAEEKE--E----------------NF--------------------------------------------------- 657 (881)
T ss_pred CCCchhhh--h----------------cc---------------------------------------------------
Confidence 22211000 0 00
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEe----ecCCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMR----ARGGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~----~~~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
....+......++||+||+..+.+++|...|..+|.+..+++. +++-+|.|+|.|...++|.+|+....+.-+
T Consensus 658 --kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 658 --KVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred --CcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh
Confidence 0000001235679999999999999999999999998877665 366788999999999999999976444333
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0037 Score=57.28 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=57.3
Q ss_pred CCCeEEEcCCCCC--CCHHHH----HHHhhcCCCccEEEEEecC-CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 34 GINTLFVSGLPDD--VRAREI----HNLFRRKPGFDFCQLKYTG-RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 34 ~~~~lfV~nLp~~--~te~~L----~~~F~~~G~i~~v~i~~~~-~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
..++|+|.|.|.- ...+.| ..+|+++|+|..+.+.... .+-.||.|++|.+.++|..|++.+||..|+ ...
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--knH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--KNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--ccc
Confidence 4478999999963 333444 5789999999887776443 234559999999999999999999999995 334
Q ss_pred eEEEE
Q 023143 107 VLHIE 111 (286)
Q Consensus 107 ~l~v~ 111 (286)
.+.+.
T Consensus 135 tf~v~ 139 (698)
T KOG2314|consen 135 TFFVR 139 (698)
T ss_pred eEEee
Confidence 44443
No 177
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.88 E-value=0.0045 Score=47.36 Aligned_cols=73 Identities=25% Similarity=0.322 Sum_probs=53.3
Q ss_pred CCCCCeEEEcCCC------CCCCH---HHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCC
Q 023143 32 DNGINTLFVSGLP------DDVRA---REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (286)
Q Consensus 32 ~~~~~~lfV~nLp------~~~te---~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (286)
+++..||.|.=+. ....+ ++|-+.|+.||++.-|++. .+ .-.|+|.+-++|-+|+. ++|..+.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~---~mwVTF~dg~sALaals-~dg~~v~- 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GD---TMWVTFRDGQSALAALS-LDGIQVN- 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TT---CEEEEESSCHHHHHHHH-GCCSEET-
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CC---eEEEEECccHHHHHHHc-cCCcEEC-
Confidence 5567788777666 12332 2667889999999888777 44 79999999999999995 9999997
Q ss_pred CCCCeEEEEEee
Q 023143 103 QSGSVLHIELAR 114 (286)
Q Consensus 103 ~~g~~l~v~~~~ 114 (286)
|+.|+|..-.
T Consensus 96 --g~~l~i~LKt 105 (146)
T PF08952_consen 96 --GRTLKIRLKT 105 (146)
T ss_dssp --TEEEEEEE--
T ss_pred --CEEEEEEeCC
Confidence 9999998643
No 178
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.85 E-value=0.00078 Score=64.29 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=66.0
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEeccc
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~ 282 (286)
...++.|.+.+.+..-|..+|++||.|.+....++. ..|.|+|.+++.|..|+++++|+++..- |-+.+|.|||.-
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTL 374 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEecccc
Confidence 334556666788889999999999999999987766 6899999999999999999999999877 889999999853
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.82 E-value=0.0025 Score=51.14 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=52.4
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhc-CCCc---eEEEEee-----cC-CccEEEEEECCHHHHHHHHHhcCCCccCCCCCC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSV-YPGF---NMLKMRA-----RG-GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 272 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~-~G~v---~~v~~~~-----~~-~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~ 272 (286)
...|.|++||+++|++++.+.++. ++.- ..+.... .. ....|||.|.+.++...-...++|..+.+.-|+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 668999999999999999998887 6665 3443222 11 122799999999999999999999999766344
Q ss_pred --cEEEEEe
Q 023143 273 --GMHIEYA 279 (286)
Q Consensus 273 --~l~V~~a 279 (286)
.-.|+||
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 4556665
No 180
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0047 Score=56.12 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=61.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhh-cCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHH----hCCCccC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFR-RKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHE----LNGVKFD 101 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~----l~g~~~~ 101 (286)
...-++.+|||||+||.-++.++|-.+|+ -||.|.-+-|.-+. +-.+|-|=|.|.+..+=.+||.. ++...|
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~- 442 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI- 442 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEecccc-
Confidence 33467789999999999999999999999 89999888776331 22233889999999999999974 344444
Q ss_pred CCCCCeEEEEEe
Q 023143 102 PQSGSVLHIELA 113 (286)
Q Consensus 102 ~~~g~~l~v~~~ 113 (286)
.+.+.|...
T Consensus 443 ---~KRVEIkPY 451 (520)
T KOG0129|consen 443 ---DKRVEIKPY 451 (520)
T ss_pred ---ceeeeecce
Confidence 455555543
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.71 E-value=0.011 Score=38.48 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=42.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcC----CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRK----PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (286)
..|.|+|+. .++.++|+.+|..| +.. .|.-+- .. .|-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWId--Dt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWID--DT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEec--CC---cEEEEECCHHHHHHHHHcC
Confidence 459999995 59999999999999 543 444442 33 8999999999999999764
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.66 E-value=0.061 Score=39.50 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=60.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC-ccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
+.......+.+...|.-++.++|..+.+.+-. |..++|+.++..++=-+.++|.+.++|.+..+.+||+.+..-.....
T Consensus 8 ~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~C 87 (110)
T PF07576_consen 8 PDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETC 87 (110)
T ss_pred CCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCcee
Confidence 34445566667777777888888877776644 67778886665555589999999999999999999999852223334
Q ss_pred EEEEe
Q 023143 109 HIELA 113 (286)
Q Consensus 109 ~v~~~ 113 (286)
+|-|.
T Consensus 88 hvvfV 92 (110)
T PF07576_consen 88 HVVFV 92 (110)
T ss_pred EEEEE
Confidence 44443
No 183
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.61 E-value=0.0033 Score=54.61 Aligned_cols=82 Identities=22% Similarity=0.294 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccE------EEEEe----cCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF------CQLKY----TGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~------v~i~~----~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
...+.+|||-+||..+++++|.++|..+|.|.. .+|.+ .+...++=|.|.|.+..+|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 456688999999999999999999999998822 12221 11122338999999999999999999999997
Q ss_pred CCCCCeEEEEEeecC
Q 023143 102 PQSGSVLHIELARSN 116 (286)
Q Consensus 102 ~~~g~~l~v~~~~~~ 116 (286)
+..|+|..+...
T Consensus 143 ---gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 ---GNTIKVSLAERR 154 (351)
T ss_pred ---CCCchhhhhhhc
Confidence 888888777544
No 184
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.60 E-value=0.0013 Score=54.61 Aligned_cols=62 Identities=19% Similarity=0.277 Sum_probs=47.9
Q ss_pred HHHHHHhh-cCCCccEEEEEec-CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 50 REIHNLFR-RKPGFDFCQLKYT-GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 50 ~~L~~~F~-~~G~i~~v~i~~~-~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
+++...|+ +||+|+++++.-. ..--.+-+||.|...++|++|++.||+.-+. |++|+.++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~---G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN---GRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc---CCcceeeecC
Confidence 45556666 9999998866511 0001117999999999999999999999998 9999999865
No 185
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.58 E-value=0.0088 Score=49.67 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=52.5
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
..|+|.||..-++.+.|..-|+.||.|....+.. .+..+-++|.|...-.|.+|++.++-..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 4599999999999999999999999998554433 444457999999999999999998555444
No 186
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.55 E-value=0.016 Score=43.96 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=57.8
Q ss_pred CCCccEEEEccCCC----CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGP----NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~----~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.||-.||.|+=|.. .-+-..+..-.+.||.|.+|.+... ..|.|.|.+..+|=+|+.+++.. .. |..++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s~-~p---gtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQSR-AP---GTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcCC-CC---CceEE
Confidence 56778888865544 4344445556789999999876543 46999999999999999999874 44 55888
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
.+|-..=|.
T Consensus 156 CsWqqrFMs 164 (166)
T PF15023_consen 156 CSWQQRFMS 164 (166)
T ss_pred eeccccccc
Confidence 888665544
No 187
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.52 E-value=0.0041 Score=58.10 Aligned_cols=100 Identities=19% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEE
Q 023143 1 MAHPPYDPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFA 80 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV 80 (286)
|||.|.-|.-.--....||.+|+.|- ..+..+.-+|||+|+...+..+-++.+...+|-|-+++.. . |+|.
T Consensus 8 ~a~~P~~~~~~~~~~~~p~~~p~qp~--~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---~----fgf~ 78 (668)
T KOG2253|consen 8 AAGMPMMPQVPMVGNGVPYVVPIQPV--FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---K----FGFC 78 (668)
T ss_pred CCCCCCCCCCccccCCcccccCCccc--ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---h----hccc
Confidence 56777755432222333333333221 2234457889999999999999999999999998776544 2 9999
Q ss_pred EEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 81 TFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 81 ~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
.|..+.-+.+|+..+....+. |..+.+..
T Consensus 79 ~f~~~~~~~ra~r~~t~~~~~---~~kl~~~~ 107 (668)
T KOG2253|consen 79 EFLKHIGDLRASRLLTELNID---DQKLIENV 107 (668)
T ss_pred chhhHHHHHHHHHHhcccCCC---cchhhccc
Confidence 999999999999999888886 77766654
No 188
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.45 E-value=0.0035 Score=50.24 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=52.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhc-CCCc---cEEEEEecC----CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRR-KPGF---DFCQLKYTG----RGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~~~----~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
.+...|-|++||+.+||+++++.++. ++.. ..+.-.... ...-.-|||.|.+.+++......++|..|.-..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 35568999999999999999998887 6665 233212111 111128999999999999999999998884223
Q ss_pred C--CeEEEEEeec
Q 023143 105 G--SVLHIELARS 115 (286)
Q Consensus 105 g--~~l~v~~~~~ 115 (286)
| ....|+++-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3 3445666544
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.42 E-value=0.025 Score=36.75 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=44.7
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCC---CceEEEEeecCCccEEEEEECCHHHHHHHHHhc
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYP---GFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 261 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G---~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~l 261 (286)
...|+|++++. ++.++++.+|..|. ...+|.-+.+. .|=|-|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 45699999964 78999999999991 23467777765 4999999999999999875
No 190
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.25 E-value=0.0042 Score=55.02 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=55.7
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEeccc
Q 023143 205 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 205 ~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~ 282 (286)
.|||+||.+.++-.+|..+|...-.--.-.++-+. +|+||.+.+..-|.+|++.++|+.-. .|+++.|.++-.+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~k~--gyafvd~pdq~wa~kaie~~sgk~el--qGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS--GYAFVDCPDQQWANKAIETLSGKVEL--QGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceeeec--ceeeccCCchhhhhhhHHhhchhhhh--cCceeeccchhhH
Confidence 58999999999999999999764211111223333 68999999999999999999987542 2668888876544
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.03 E-value=0.02 Score=46.12 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=46.0
Q ss_pred CHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcC--CCccCCCCCCcEEEEEec
Q 023143 216 TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ--DSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 216 te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ln--g~~~~~~~g~~l~V~~ak 280 (286)
..+.|+++|..|+.+..+...++- +...|.|.+.++|.+|...|+ +..+.++ .++|.|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcc
Confidence 458899999999999877777755 679999999999999999999 9999944 99999984
No 192
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.02 E-value=0.0093 Score=52.39 Aligned_cols=63 Identities=14% Similarity=0.296 Sum_probs=52.1
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec-------CCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.+|-|.||.+++|.+.++.||.-.|.|..++|+.. .....|||.|.+...+..|- .|-++.+-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfv 77 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFV 77 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceee
Confidence 38999999999999999999999999999998771 12348999999999888776 45555554
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.89 E-value=0.23 Score=36.49 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=54.3
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEeecC--CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~~~--~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
+..+-+...|.-++.++|..+.+.+- .|..++++++. ++-.+.++|.+.++|..-...+||+.+..-..-..+|-|-
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 44444555556666677776666554 45678887733 3338999999999999999999999997543445565554
Q ss_pred c
Q 023143 280 R 280 (286)
Q Consensus 280 k 280 (286)
+
T Consensus 93 ~ 93 (110)
T PF07576_consen 93 K 93 (110)
T ss_pred E
Confidence 3
No 194
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.77 E-value=0.035 Score=38.13 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=42.5
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD 263 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng 263 (286)
..+.+| ..|...-..||.++|+.||.|. |.-+... -|||...+.+.|..|+..+..
T Consensus 9 dHVFhl-tFPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHL-TFPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEE-E--TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEE-eCchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 345556 5999999999999999999995 5555554 599999999999999998864
No 195
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.70 E-value=0.022 Score=54.79 Aligned_cols=70 Identities=14% Similarity=0.219 Sum_probs=58.4
Q ss_pred cCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeec
Q 023143 41 SGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (286)
Q Consensus 41 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~ 115 (286)
-|.+...+-.-|..+|+.||.|.+.+.+ +.-+ .|.|+|...+.|..|+..++|+++ -..|.+.+|-+++.
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N---~alvs~~s~~sai~a~dAl~gkev-s~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTL-RDLN---MALVSFSSVESAILALDALQGKEV-SVTGAPSRVSFAKT 373 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheec-cccc---chhhhhHHHHHHHHhhhhhcCCcc-cccCCceeEEeccc
Confidence 3444456777889999999999999887 3344 899999999999999999999988 55688999988874
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.41 E-value=0.0062 Score=52.57 Aligned_cols=77 Identities=10% Similarity=0.203 Sum_probs=60.9
Q ss_pred cEEEEccCCCCCCHHHHHH---HHhcCCCceEEEEeecC----C---ccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 204 STLFIANLGPNCTEDELKQ---TLSVYPGFNMLKMRARG----G---MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~---~F~~~G~v~~v~~~~~~----~---~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
.-+||-+|+..+..+.+.+ .|.+||.|..|.+..+. + ..-++|+|...++|+.||...+|..+. |+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d---g~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD---GRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh---hhh
Confidence 4467778887766666655 89999999988877633 1 125999999999999999999999998 558
Q ss_pred EEEEEecccc
Q 023143 274 MHIEYARSKM 283 (286)
Q Consensus 274 l~V~~ak~~~ 283 (286)
|+.+|+..+.
T Consensus 155 lka~~gttky 164 (327)
T KOG2068|consen 155 LKASLGTTKY 164 (327)
T ss_pred hHHhhCCCcc
Confidence 8888877664
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.19 E-value=0.13 Score=44.01 Aligned_cols=61 Identities=7% Similarity=-0.026 Sum_probs=48.5
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
-..|-|-+.++. .-.-|..+|++||.|.+.... ..-.+..|+|.++-+|++||.. ||..|.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~ 257 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIID 257 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeec
Confidence 566777788877 345677899999999766555 2225999999999999999987 888886
No 198
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.10 E-value=0.049 Score=36.95 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=39.9
Q ss_pred EEEEccCC--CCCCHHHHHHHHhcCCCce-----EEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 205 TLFIANLG--PNCTEDELKQTLSVYPGFN-----MLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 205 ~L~v~NL~--~~~te~~L~~~F~~~G~v~-----~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+||| |+. ..++..+|..++..-+.+. .+++.. .|+||+-. .+.|..+++.|++..+. |+.++|+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~-~~~a~~v~~~l~~~~~~---gk~v~ve 72 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVP-EEVAEKVLEALNGKKIK---GKKVRVE 72 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE--TT-HHHHHHHHTT--SS---S----EE
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEEC-HHHHHHHHHHhcCCCCC---CeeEEEE
Confidence 5777 666 4889999999998887665 344433 36999987 56899999999999999 5599988
Q ss_pred Ee
Q 023143 278 YA 279 (286)
Q Consensus 278 ~a 279 (286)
-|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.95 E-value=0.0077 Score=52.03 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCCCHHH-H--HHHhhcCCCccEEEEEecC-----CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 35 INTLFVSGLPDDVRARE-I--HNLFRRKPGFDFCQLKYTG-----RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~-L--~~~F~~~G~i~~v~i~~~~-----~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
.+-+||-+|+..+..+. | .+.|.+||.|..|.+.-+. .+...-++|+|...++|..||...+|..++ |+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d---g~ 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD---GR 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh---hh
Confidence 35689999998875554 4 3789999999888776322 112227999999999999999999999998 88
Q ss_pred eEEEEEeec
Q 023143 107 VLHIELARS 115 (286)
Q Consensus 107 ~l~v~~~~~ 115 (286)
.++..+...
T Consensus 154 ~lka~~gtt 162 (327)
T KOG2068|consen 154 ALKASLGTT 162 (327)
T ss_pred hhHHhhCCC
Confidence 877776553
No 200
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.73 E-value=2.2 Score=36.58 Aligned_cols=79 Identities=11% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC---------CCCeeEEEEEEcCHHHHHHHHHH----hC--CCc
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG---------RGNQVVAFATFVNHQTAVAALHE----LN--GVK 99 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---------~~~~~~aFV~F~~~~~A~~A~~~----l~--g~~ 99 (286)
.|.|...||..+++-..+-..|..||+|++|.+.-.. .+......+.|-+.+.+...+.. |. ...
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999998332 12223899999999988776643 22 233
Q ss_pred cCCCCCCeEEEEEeecC
Q 023143 100 FDPQSGSVLHIELARSN 116 (286)
Q Consensus 100 ~~~~~g~~l~v~~~~~~ 116 (286)
+. ...|.+.+..-+
T Consensus 95 L~---S~~L~lsFV~l~ 108 (309)
T PF10567_consen 95 LK---SESLTLSFVSLN 108 (309)
T ss_pred cC---CcceeEEEEEEe
Confidence 44 778888877643
No 201
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.18 Score=46.76 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcC----CCccEEEEEe-------------cCC---------------------
Q 023143 32 DNGINTLFVSGLPDD-VRAREIHNLFRRK----PGFDFCQLKY-------------TGR--------------------- 72 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~----G~i~~v~i~~-------------~~~--------------------- 72 (286)
+.++++|-|.|+.++ +...+|..+|+.| |.|.+|.|-. .+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 667899999999987 8999999888765 4788887641 111
Q ss_pred -------------CCee--EEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 73 -------------GNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 73 -------------~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
++.. ||.|+|.+++.|...++.++|..+ ...+-.|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef-EsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF-ESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee-ccccceeeeeecC
Confidence 1111 999999999999999999999999 5666777777654
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.28 E-value=0.16 Score=40.92 Aligned_cols=61 Identities=20% Similarity=0.184 Sum_probs=44.6
Q ss_pred CHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhC--CCccCCCCCCeEEEEEeec
Q 023143 48 RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN--GVKFDPQSGSVLHIELARS 115 (286)
Q Consensus 48 te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~--g~~~~~~~g~~l~v~~~~~ 115 (286)
..+.|+++|..|+.+.....+..-+ -..|.|.+.++|.+|...|+ +..+. |..+++.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~---g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFN---GKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEET---TEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccC---CCceEEEEccc
Confidence 4578999999999988776662222 68999999999999999999 99998 99999998843
No 203
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.86 E-value=0.07 Score=46.37 Aligned_cols=75 Identities=7% Similarity=0.010 Sum_probs=54.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCc--cEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE-E
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGF--DFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI-E 111 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i--~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v-~ 111 (286)
++||+||-+.+|.+||-+....-|-- .++++.-. ....++||+|...+..+.++-|+.|-.+.|+ |..-.| .
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH---GQ~P~V~~ 158 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH---GQSPTVLS 158 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec---CCCCeeec
Confidence 58999999999999998777666643 33344311 1223449999999999999999999999998 654444 4
Q ss_pred Eee
Q 023143 112 LAR 114 (286)
Q Consensus 112 ~~~ 114 (286)
|.+
T Consensus 159 ~NK 161 (498)
T KOG4849|consen 159 YNK 161 (498)
T ss_pred cch
Confidence 443
No 204
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.82 E-value=0.12 Score=47.76 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhc--CCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSV--YPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 262 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~--~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ln 262 (286)
...+.+.|+-||.+.-+|+++.||+. ...+++|.+-.+.+ =||+|++..||+.|...|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHH
Confidence 35788889999999999999999975 66888999887542 7999999999999987753
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.67 E-value=0.63 Score=42.06 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=59.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcC-CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRK-PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
+.++..|+|=.+|-.++-.||-.++..+ -.|..++++.++-.++-.+.|.|.+.++|...++.+||+.|.
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 3347889999999999999999988766 347888888655555558999999999999999999999885
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.65 E-value=0.11 Score=48.94 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=59.3
Q ss_pred CCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 198 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 198 ~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
...++..++||+|+-..+..+-++.+....|.|..++... |||..|..+..+..|+..++-..+++.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 3456788999999999999999999999999998876554 899999999999999999998888755
No 207
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.46 Score=44.26 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=63.1
Q ss_pred CccEEEEccCCC-CCCHHHHHHHHhcCC----CceEEEEee--------------cC-----------------------
Q 023143 202 PCSTLFIANLGP-NCTEDELKQTLSVYP----GFNMLKMRA--------------RG----------------------- 239 (286)
Q Consensus 202 ~~~~L~v~NL~~-~~te~~L~~~F~~~G----~v~~v~~~~--------------~~----------------------- 239 (286)
.+++|=|-||++ .+..++|.-+|++|- .|.+|.|.. +.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 488899999998 899999999998763 566777643 00
Q ss_pred --------------CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 240 --------------GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 240 --------------~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
..-||.|+|.+.+.|....+.++|.++..+ ++.|-+.|--
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFIP 306 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFIP 306 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeecC
Confidence 012899999999999999999999999988 7777777643
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.13 E-value=0.45 Score=31.40 Aligned_cols=55 Identities=11% Similarity=0.104 Sum_probs=42.7
Q ss_pred CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 46 DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 46 ~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.++-++++..+..|+-. .| +.... ==||.|.+..+|+++....+|..+. +..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I--~~d~t----GfYIvF~~~~Ea~rC~~~~~~~~~f---~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RI--RDDRT----GFYIVFNDSKEAERCFRAEDGTLFF---TYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-eE--EecCC----EEEEEECChHHHHHHHHhcCCCEEE---EEEEEe
Confidence 57889999999999744 33 32332 3689999999999999999999886 555543
No 209
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.73 E-value=0.064 Score=48.45 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=58.3
Q ss_pred CCeEEEcCCCCCC-CHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 35 INTLFVSGLPDDV-RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 35 ~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
++.|-+.-.|+.+ +..+|...|..||.|+.|.+.+... -|.|+|.+..+|-+|.. ..+..|. +|.|+|.|.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~----~a~vTF~t~aeag~a~~-s~~avln---nr~iKl~wh 443 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL----HAVVTFKTRAEAGEAYA-SHGAVLN---NRFIKLFWH 443 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh----hheeeeeccccccchhc-cccceec---CceeEEEEe
Confidence 3444444555554 5678999999999999999986522 79999999999988874 6888898 999999997
Q ss_pred ec
Q 023143 114 RS 115 (286)
Q Consensus 114 ~~ 115 (286)
..
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 210
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.57 E-value=0.81 Score=30.91 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=35.9
Q ss_pred CCCHHHHHHHhhcCCCc-----cEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 46 DVRAREIHNLFRRKPGF-----DFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 46 ~~te~~L~~~F~~~G~i-----~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
.++..+|..++..-+.| -.|++. .+ |+||+-... .|.++++.|++..+. |++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~---~S~vev~~~-~a~~v~~~l~~~~~~---gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF---DN---FSFVEVPEE-VAEKVLEALNGKKIK---GKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS----EEEEE-TT--HHHHHHHHTT--SS---S----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe---ee---EEEEEECHH-HHHHHHHHhcCCCCC---CeeEEEEEC
Confidence 47888888888777665 455555 44 999998775 899999999999998 999999864
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.56 E-value=0.85 Score=41.26 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=63.1
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEeecC--CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~~~--~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
++.|.|--+|..+|--||..++..+- .|.+++++++. ++-.+.+.|.+.++|..-.+.+||+.|...+--..+|-|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V 153 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYV 153 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEE
Confidence 88999999999999999999988765 46788888832 2237999999999999999999999998654445555554
Q ss_pred c
Q 023143 280 R 280 (286)
Q Consensus 280 k 280 (286)
.
T Consensus 154 ~ 154 (493)
T KOG0804|consen 154 D 154 (493)
T ss_pred E
Confidence 3
No 212
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.41 E-value=1.1 Score=29.49 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 214 NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 214 ~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
.++-++++.-+..|+-. .|..-+.. =||-|.+.++|.++....+|..+.+.
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I~~d~tG----fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RIRDDRTG----FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCcc-eEEecCCE----EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 67889999999999654 33333322 48999999999999999999999844
No 213
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.87 E-value=0.99 Score=41.93 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=47.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc--CCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRR--KPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (286)
.+.|.++-+|..+.+|+++.+|+- +-++.+|.+-... -=||+|.+..||..|++.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHH
Confidence 356889999999999999999975 6777888777433 5799999999999999765
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.18 E-value=0.97 Score=38.79 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=48.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
|=|-++|.. .-.-|..+|++||.|.....- ...| +-.|.|.+.-+|.+||. .+|+.| +..+-|.+..
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngN---wMhirYssr~~A~KALs-kng~ii----~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGN---WMHIRYSSRTHAQKALS-KNGTII----DGDVMIGVKP 266 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCc---eEEEEecchhHHHHhhh-hcCeee----ccceEEeeee
Confidence 334455553 344667899999999766544 3333 99999999999999995 789888 5566666554
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.98 E-value=0.5 Score=42.93 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=58.1
Q ss_pred CccEEEEccCCCCC-CHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNC-TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~-te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
..+.|-+.-.++.. +.++|...|.+||.|..|.+... .--|.|+|.+..+|-+|. +.+|..|.+ +.|+|-|=+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avlnn---r~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLNN---RFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceecC---ceeEEEEec
Confidence 46677777777644 56889999999999998887664 246999999999997776 568999984 499998854
No 216
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.25 E-value=1.1 Score=31.40 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHH
Q 023143 202 PCSTLFIANLGPNCTEDELKQTL 224 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F 224 (286)
..++|.|.|||....+++|++..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 48889999999999999999754
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.54 E-value=0.5 Score=39.97 Aligned_cols=81 Identities=19% Similarity=0.310 Sum_probs=51.6
Q ss_pred CccEEEEccCCC------------CCCHHHHHHHHhcCCCceEEEEee---------cCC-----ccE---------EEE
Q 023143 202 PCSTLFIANLGP------------NCTEDELKQTLSVYPGFNMLKMRA---------RGG-----MPV---------AFA 246 (286)
Q Consensus 202 ~~~~L~v~NL~~------------~~te~~L~~~F~~~G~v~~v~~~~---------~~~-----~~~---------afV 246 (286)
...||++.+||. --+++.|+..|+.||.|..|.++- ++. +|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 356677777772 246788999999999999887753 222 223 456
Q ss_pred EECCHHHHHHHHHhcCCCccCCC--CC---CcEEEEEeccc
Q 023143 247 DFEEVEQASIAMEGLQDSTLPSS--DR---GGMHIEYARSK 282 (286)
Q Consensus 247 ~f~~~e~A~~Al~~lng~~~~~~--~g---~~l~V~~ak~~ 282 (286)
+|..-..-..|+.+|.|..+--+ || -.++|.|.+++
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 66555555566666666655322 12 26788887764
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=84.00 E-value=2.2 Score=36.57 Aligned_cols=78 Identities=6% Similarity=0.097 Sum_probs=60.6
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC-----------CccEEEEEECCHHHHHH----HHHhcCCCcc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-----------GMPVAFADFEEVEQASI----AMEGLQDSTL 266 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~-----------~~~~afV~f~~~e~A~~----Al~~lng~~~ 266 (286)
.+|.|.+.|+..+++--++..-|-+||.|++|.++.+. ......+.|-+.+.+.. .+..|+.++-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999999999999998844 23479999999999875 3444544443
Q ss_pred CCCCCCcEEEEEec
Q 023143 267 PSSDRGGMHIEYAR 280 (286)
Q Consensus 267 ~~~~g~~l~V~~ak 280 (286)
.-+ ...|.|+|..
T Consensus 94 ~L~-S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLK-SESLTLSFVS 106 (309)
T ss_pred hcC-CcceeEEEEE
Confidence 333 4477777764
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.95 E-value=0.41 Score=40.49 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=47.2
Q ss_pred CCCCeEEEcCCCCCC------------CHHHHHHHhhcCCCccEEEEE--------ecCCCC----eeE---------EE
Q 023143 33 NGINTLFVSGLPDDV------------RAREIHNLFRRKPGFDFCQLK--------YTGRGN----QVV---------AF 79 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~------------te~~L~~~F~~~G~i~~v~i~--------~~~~~~----~~~---------aF 79 (286)
..-.||++.+||..+ +++.|+..|+.||.|..|.|. ++++.. ++| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 334679999999653 678999999999999877664 233331 112 45
Q ss_pred EEEcCHHHHHHHHHHhCCCccC
Q 023143 80 ATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 80 V~F~~~~~A~~A~~~l~g~~~~ 101 (286)
|+|..-.--..||..|.|..+.
T Consensus 227 vqfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchHH
Confidence 7776666666777777777663
No 220
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=81.87 E-value=1.6 Score=34.68 Aligned_cols=77 Identities=8% Similarity=0.065 Sum_probs=55.9
Q ss_pred ccEEEEccCCCCCCH-----HHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 203 CSTLFIANLGPNCTE-----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 203 ~~~L~v~NL~~~~te-----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.+++.+.+|+..+.. ....++|.+|-+....++.+.. ++.-|.|.+++.|..|...+++..+.++ +.++.-
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~--~~~k~y 85 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK--NELKLY 85 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC--ceEEEE
Confidence 455667788753332 3445588888777666666655 6788999999999999999999999833 377777
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
|+....
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 776544
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=79.51 E-value=2.8 Score=31.11 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=26.7
Q ss_pred CCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHH
Q 023143 47 VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQT 87 (286)
Q Consensus 47 ~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~ 87 (286)
++.++|++.|+.|..+ .|+.....++..+++.|+|.+--.
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChH
Confidence 4667999999999988 577777777777799999988654
No 222
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.93 E-value=4.1 Score=36.49 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=47.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHH
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~ 94 (286)
-.+|=|-|+|.....+||...|+.||+- -++|++-.+. .||..|.+...|.+|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 3678899999999999999999999875 4566655555 999999999999999974
No 223
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=74.04 E-value=0.56 Score=43.45 Aligned_cols=66 Identities=18% Similarity=0.218 Sum_probs=53.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
..++||++|++++++-.+|..+|+.+..+.++-+.. .....+++|.|.---.-..|+.+|||..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 467899999999999999999999999998887766 223347999997766677777788887775
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.20 E-value=6.3 Score=33.67 Aligned_cols=48 Identities=17% Similarity=0.370 Sum_probs=36.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHH
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQ 86 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~ 86 (286)
.-|+++|||.++.-.||+..+.+-|-+ -..|-+. +..+-||..|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk--g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK--GHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEeee--cCCcceeEecCCcc
Confidence 449999999999999999999888765 3344443 33347999998764
No 225
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=72.59 E-value=6 Score=35.57 Aligned_cols=79 Identities=14% Similarity=0.236 Sum_probs=60.8
Q ss_pred CccEEEEccCCC-CCCHHHHHHHHhcCC----CceEEEEee--------------c------------------------
Q 023143 202 PCSTLFIANLGP-NCTEDELKQTLSVYP----GFNMLKMRA--------------R------------------------ 238 (286)
Q Consensus 202 ~~~~L~v~NL~~-~~te~~L~~~F~~~G----~v~~v~~~~--------------~------------------------ 238 (286)
++.+|-|-||++ .+...+|.-+|+.|. .+..|.|.+ +
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~~ 224 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNVF 224 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccch
Confidence 578898999998 788999999998753 344444432 0
Q ss_pred --------------CC-----------------ccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 239 --------------GG-----------------MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 239 --------------~~-----------------~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
.+ .-||.|++.+.+.+......++|.++... ++.+-+.|--.
T Consensus 225 sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRfvPD 297 (622)
T COG5638 225 SDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRFVPD 297 (622)
T ss_pred hhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc-cceeeeeecCC
Confidence 00 22899999999999999999999999988 88877777543
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=66.90 E-value=50 Score=28.42 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=37.8
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHH
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVE 252 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e 252 (286)
.+-++++||+-++-..||+..+.+.|.+-- .+-=+...+-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm-~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPM-SISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCce-eEeeecCCcceeEecCCcc
Confidence 556999999999999999999999988752 2222334467999997643
No 227
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.12 E-value=8.4 Score=28.55 Aligned_cols=47 Identities=17% Similarity=0.284 Sum_probs=23.9
Q ss_pred EEEccCCC---------CCCHHHHHHHHhcCCCceEEEEeec-CCccEEEEEECCHH
Q 023143 206 LFIANLGP---------NCTEDELKQTLSVYPGFNMLKMRAR-GGMPVAFADFEEVE 252 (286)
Q Consensus 206 L~v~NL~~---------~~te~~L~~~F~~~G~v~~v~~~~~-~~~~~afV~f~~~e 252 (286)
+.|-|++. ..+.++|++.|+.|..++...+... ...++++|.|..--
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCCh
Confidence 44567753 3567999999999998864444332 23469999997643
No 228
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.55 E-value=2.5 Score=29.66 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhh
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFR 57 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~ 57 (286)
.....++|.|.|||..+++++|++..+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 455679999999999999999998764
No 229
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=61.38 E-value=7.9 Score=30.89 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=50.3
Q ss_pred CeEEEcCCCCCCCHH-----HHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC-eEE
Q 023143 36 NTLFVSGLPDDVRAR-----EIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS-VLH 109 (286)
Q Consensus 36 ~~lfV~nLp~~~te~-----~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~-~l~ 109 (286)
.++.+++++..+-.+ ...++|..|-+....+++ ...+ ..-|.|.+++.|..|...+++..|. |+ .+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfr---rvRi~f~~p~~a~~a~i~~~~~~f~---~~~~~k 83 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFR---RVRINFSNPEAAADARIKLHSTSFN---GKNELK 83 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-Hhhc---eeEEeccChhHHHHHHHHhhhcccC---CCceEE
Confidence 457888888764222 224667666655444444 2222 6778999999999999999999997 77 666
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
.-++...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 6555543
No 230
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=59.72 E-value=12 Score=27.03 Aligned_cols=25 Identities=48% Similarity=0.953 Sum_probs=15.4
Q ss_pred CCCCCCCCC-------------CCCCCCCCCCCCC-CCC
Q 023143 4 PPYDPYYLP-------------PIHPPPPPVPPPP-YHH 28 (286)
Q Consensus 4 ~~~~~~~~~-------------~~~~~~~~~~~~~-~~~ 28 (286)
.|||-||+. +.+.+|.++|||| .|+
T Consensus 36 ~PydhygSrgs~grrs~gs~~~~~~gSPePPpPPPRn~D 74 (124)
T PF12355_consen 36 APYDHYGSRGSVGRRSVGSARNPGNGSPEPPPPPPRNHD 74 (124)
T ss_pred CCccccccccccceeccccccCCCCCCCCCCCcCCCCCC
Confidence 466667654 2355777777777 444
No 231
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=57.24 E-value=45 Score=22.39 Aligned_cols=43 Identities=33% Similarity=0.349 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhc
Q 023143 218 DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 261 (286)
Q Consensus 218 ~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~l 261 (286)
.++++++..+| +.-+++.-..+-++.|+-+.+.+.|.++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 56777888898 44444554433469999999999999988876
No 232
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=56.24 E-value=10 Score=31.54 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=30.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFC 65 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v 65 (286)
...+.+++|+-|+|..+|++.|..+.+..|.+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 45578999999999999999999999999977554
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=56.06 E-value=25 Score=22.77 Aligned_cols=19 Identities=16% Similarity=0.252 Sum_probs=15.5
Q ss_pred HHHHHHhhcCCCccEEEEE
Q 023143 50 REIHNLFRRKPGFDFCQLK 68 (286)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~ 68 (286)
.+|+++|+..|.|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999999766554
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=55.61 E-value=17 Score=32.53 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec-----CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-----GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-----~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (286)
-..|-|++||..+++++|.+-..+|-.=........ .......|||.|.+.++.......++|..+....|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 356889999999999999888777644222211110 01112289999999999999999999988853344
No 235
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=54.41 E-value=16 Score=28.00 Aligned_cols=36 Identities=17% Similarity=-0.086 Sum_probs=29.2
Q ss_pred cEEEEccCCCC-CCHHHHHHHHhcCCCceEEEEeecC
Q 023143 204 STLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRARG 239 (286)
Q Consensus 204 ~~L~v~NL~~~-~te~~L~~~F~~~G~v~~v~~~~~~ 239 (286)
-.|-|.|||.. .+++-|+.+.+..|.+..+......
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 34557799974 7888999999999999999877643
No 236
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=53.70 E-value=9.9 Score=21.67 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=10.3
Q ss_pred CCCHHHHHHHhhcCCC
Q 023143 46 DVRAREIHNLFRRKPG 61 (286)
Q Consensus 46 ~~te~~L~~~F~~~G~ 61 (286)
++++++|++.|+..+.
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 6899999999988754
No 237
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=53.45 E-value=57 Score=20.86 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=30.7
Q ss_pred CHHHHHHHHhcCC-CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 216 TEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 216 te~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
.-.++.++|.+.| .|.++.......++..-+.+++.+.|.++++. +|+.+
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~~v 64 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGFAV 64 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCCEE
Confidence 3467888888877 56666655543344555556666666666655 35443
No 238
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.20 E-value=34 Score=30.89 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=44.9
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCce-EEEEeecCCccEEEEEECCHHHHHHHHHh
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFN-MLKMRARGGMPVAFADFEEVEQASIAMEG 260 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~-~v~~~~~~~~~~afV~f~~~e~A~~Al~~ 260 (286)
..+|=|.|+|...-.+||...|+.|++-- +|+-+... .||--|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 57888999999999999999999998643 34444443 599999999999999966
No 239
>PF14893 PNMA: PNMA
Probab=52.14 E-value=15 Score=32.65 Aligned_cols=75 Identities=17% Similarity=0.302 Sum_probs=47.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHh----hcCCCccEEEEE---ecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLF----RRKPGFDFCQLK---YTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F----~~~G~i~~v~i~---~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
-+.-+.|.|.++|.+|++++|.+.. .+.|.. ++. +....+..-|+|+|...-+ ..+==..| ++.
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~y---rvl~~~f~~~~~~~aalve~~e~~n-----~~~iP~~i-~g~ 85 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRY---RVLGKMFRREENAKAALVEFAEDVN-----YSLIPREI-PGK 85 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccc---eehhhHhhhhcccceeeeecccccc-----hhhCchhc-CCC
Confidence 3456889999999999999997664 445543 332 1222223389999976432 22223445 666
Q ss_pred CCeEEEEEeec
Q 023143 105 GSVLHIELARS 115 (286)
Q Consensus 105 g~~l~v~~~~~ 115 (286)
|..++|-+-..
T Consensus 86 gg~W~Vv~~p~ 96 (331)
T PF14893_consen 86 GGPWRVVFKPP 96 (331)
T ss_pred CCceEEEecCC
Confidence 88888876543
No 240
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=51.32 E-value=59 Score=20.39 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=42.2
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCH----HHHHHHHHh
Q 023143 205 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEV----EQASIAMEG 260 (286)
Q Consensus 205 ~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~----e~A~~Al~~ 260 (286)
|+.|.||.-.--...+.+.+....+|..+.+-... +.+-|.|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~--~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET--KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC--CEEEEEEecCCCCHHHHHHHHHH
Confidence 57788888888889999999999999988876655 6799999754 455556655
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=49.77 E-value=24 Score=30.98 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=30.3
Q ss_pred EEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeecCCCCCcC
Q 023143 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRK 122 (286)
Q Consensus 78 aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~~~~~~~~ 122 (286)
|||+|.+..+|..|.+.+.... .+.++++.|....|...+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----~~~~~v~~APeP~DI~W~ 40 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----PNSWRVSPAPEPDDIIWE 40 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----CCCceEeeCCCccccccc
Confidence 7999999999999999665553 345688877766666554
No 242
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=48.27 E-value=29 Score=24.81 Aligned_cols=49 Identities=10% Similarity=0.175 Sum_probs=32.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCH
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNH 85 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~ 85 (286)
.-|||++++..+.+.--..+-+.++. .++.+.....+-++|+|-.+.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCCC
Confidence 34999999887765544444444443 45566666667677998887764
No 243
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=46.35 E-value=38 Score=23.60 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=32.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcC
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVN 84 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~ 84 (286)
.-|||+|++..+.|.-...+.+..+ --++.+....++-++|+|-...+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~-~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIG-DGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCC-CccEEEEEccCCCCCEEEEEeCC
Confidence 3499999998877654444444333 34556666777777799988744
No 244
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=43.72 E-value=90 Score=20.82 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh
Q 023143 50 REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (286)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (286)
.+|.+.+..+| +.-+++ .+-+..++.|+-+.+.+.|.++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~--sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM--SGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE--ETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec--CCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 46677788898 434433 44433449999999999998888766
No 245
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=43.58 E-value=8.4 Score=34.00 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=42.6
Q ss_pred CHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCC
Q 023143 216 TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 216 te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
+...+.+...+.|+|..-.|.+.-+.|.+||-.-..+++.++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3577888888999998888888777789999999999999999999875
No 246
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=41.87 E-value=87 Score=19.58 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=41.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCH----HHHHHHHHH
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNH----QTAVAALHE 94 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~----~~A~~A~~~ 94 (286)
|+.|.|+...--...+...+...-.|.++.+.+.. + .+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-~---~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-K---TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-T---EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-C---EEEEEEecCCCCHHHHHHHHHH
Confidence 57888888888888999999999889999888543 3 788888755 455555554
No 247
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=41.42 E-value=52 Score=25.53 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=34.9
Q ss_pred EEEcCCC-CCCCHHHHHHHhhc-CCC-ccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCC
Q 023143 38 LFVSGLP-DDVRAREIHNLFRR-KPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97 (286)
Q Consensus 38 lfV~nLp-~~~te~~L~~~F~~-~G~-i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g 97 (286)
+|+++|. ...+-++|+..... |+. +..++.. .-.....+.|+|..+.+|..-++.|-.
T Consensus 7 a~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~--~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 7 AYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVR--KVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEECChhhhHHHHHHHHHHHHHHHhcccccceee--ccccCceEEEEEechHHHHHHHHHHhh
Confidence 5778887 22345566544432 322 2223332 222233999999999999999987744
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=41.37 E-value=23 Score=29.60 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=30.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEe
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMR 236 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~ 236 (286)
...+||+-|+|...|++-|..+.++.|.+..+.+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 47889999999999999999999999977666543
No 249
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=41.22 E-value=83 Score=19.17 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCC-CceEEEEeecC-CccEEEEEECCHHHHHHHH
Q 023143 217 EDELKQTLSVYP-GFNMLKMRARG-GMPVAFADFEEVEQASIAM 258 (286)
Q Consensus 217 e~~L~~~F~~~G-~v~~v~~~~~~-~~~~afV~f~~~e~A~~Al 258 (286)
-.++.+++...| +|..+...... ..+...+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345667777766 67667665543 4567788888888888776
No 250
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=40.94 E-value=95 Score=29.36 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=41.5
Q ss_pred CccEEEEccCCCCCCHHHHHHHHh----cCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCC
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLS----VYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQD 263 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~----~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng 263 (286)
.+..+-++.-..+.+.-+|..+|. .+|-|+++.+.- ...+...++.|.+.++|..|+..+..
T Consensus 188 ~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~ 256 (499)
T PRK11230 188 DGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA 256 (499)
T ss_pred CCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh
Confidence 355555543333334567778775 677888777654 22335778999999999999988643
No 251
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=40.58 E-value=35 Score=27.28 Aligned_cols=54 Identities=22% Similarity=0.060 Sum_probs=37.6
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec-----CCccEEEEEECCHHHHHHHHHh
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEG 260 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~Al~~ 260 (286)
.+++|.+ +.....++|...-+ |.+..|.+... ..+|-.||.|.+.++|.+.++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5677776 33334444444444 78999988772 3456899999999999987754
No 252
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=35.58 E-value=44 Score=26.73 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=37.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC---CCeeEEEEEEcCHHHHHHHHHH
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR---GNQVVAFATFVNHQTAVAALHE 94 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~~~~~aFV~F~~~~~A~~A~~~ 94 (286)
-.+++|.. +.+...++|..+-+ |.+..|.+.-... +..|--||+|.+.++|...++.
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 34677777 33344445555554 7888887762211 2344899999999999988764
No 253
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.02 E-value=1.1e+02 Score=18.93 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCC-CceEEEEeecC--CccEEEEEECCHHHHHHHHHhcCCCc
Q 023143 217 EDELKQTLSVYP-GFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDST 265 (286)
Q Consensus 217 e~~L~~~F~~~G-~v~~v~~~~~~--~~~~afV~f~~~e~A~~Al~~lng~~ 265 (286)
-.++.+++..+| .|.++...... +.....++.++.+.+.++++. +|+.
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~~ 63 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGVE 63 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCce
Confidence 356777887776 55555543332 334556667787777777665 3443
No 254
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=34.28 E-value=1.6e+02 Score=21.56 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=40.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCc--cEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh
Q 023143 38 LFVSGLPDDVRAREIHNLFRRKPGF--DFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (286)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~i--~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (286)
.|.-++...+.-.+|++++++==-+ .-+.|.+..+. -.|..|.+.+.+++.+..+
T Consensus 49 ~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~---~~f~~F~~~~~~k~vv~~l 105 (108)
T cd01201 49 SYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRT---SIFFAFPDQNAVKKVVYAL 105 (108)
T ss_pred eccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCc---eEEEEeCcHHHHHHHHhhc
Confidence 4556777789999999999853333 23355555544 8999999999999888754
No 255
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=34.24 E-value=75 Score=22.20 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=29.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc-CCCccEEEEEecCCCCeeEEEEEEcC
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRR-KPGFDFCQLKYTGRGNQVVAFATFVN 84 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~~~~~aFV~F~~ 84 (286)
.-|||++++..+.+.--..+-+. .+. -.+.+.....+-++|+|-.+.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 34999999887765433333333 222 3556666666767788887766
No 256
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=33.16 E-value=1.6e+02 Score=20.93 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=33.5
Q ss_pred EEEEccCCCCCCHHHHHHH-------HhcCC-CceEEEEe---------ecCCcc-EEEEEECCHHHHHHHHHh
Q 023143 205 TLFIANLGPNCTEDELKQT-------LSVYP-GFNMLKMR---------ARGGMP-VAFADFEEVEQASIAMEG 260 (286)
Q Consensus 205 ~L~v~NL~~~~te~~L~~~-------F~~~G-~v~~v~~~---------~~~~~~-~afV~f~~~e~A~~Al~~ 260 (286)
++|| |.++.+++++..+ +...| .|..+.-. .+..+| |.++.|....++.+.++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 3555 5566677666654 44455 34444321 133455 899999988888888866
No 257
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.49 E-value=1.8e+02 Score=20.26 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCC-CceEEEEeecCCccEEEEEECCHHHHHHHHHhcC
Q 023143 217 EDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 262 (286)
Q Consensus 217 e~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ln 262 (286)
.+.++.+++..| .+.++.+..+.---...+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 356777888877 5666766666533489999999999998775553
No 258
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=30.41 E-value=17 Score=23.98 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh
Q 023143 50 REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (286)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (286)
++|++.|..++....+.-. .+|..|.+.++|.+++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vkL--------~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL--------KAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh--------hhccCCCCHHHHHHHHHHh
Confidence 5777777766555433212 6999999999998888764
No 259
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.28 E-value=7.5 Score=36.39 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=50.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEE--ecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK--YTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~--~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
.++|||+|+++.++-.+|..+|+.+-.+..+-+. ..-++-..+..|+|.---....|..+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4679999999999999999999999777655443 111111117889998877777888888887774
No 260
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.93 E-value=65 Score=28.94 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=49.0
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCC-ceEEEEee------cCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPG-FNMLKMRA------RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~-v~~v~~~~------~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
..+.|.+||+..++++|.+-..++.. |....+.+ ..-.+.|+|.|...++...-...++|..+-+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 44678999999999999997777653 23333332 11135899999999998888888999998655
No 261
>PRK11901 hypothetical protein; Reviewed
Probab=29.13 E-value=1.1e+02 Score=27.14 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCCHHHHHHHhhcCCCccEEEEEecCCCCee-EEEE--EEcCHHHHHHHHHHhCCCc
Q 023143 46 DVRAREIHNLFRRKPGFDFCQLKYTGRGNQV-VAFA--TFVNHQTAVAALHELNGVK 99 (286)
Q Consensus 46 ~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~-~aFV--~F~~~~~A~~A~~~l~g~~ 99 (286)
.-+++.|..+.+..+ +..+.+....++++. |..| .|.+.++|++|+..|-...
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 456888999888876 455666655566555 4333 5899999999999875543
No 262
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=29.03 E-value=37 Score=14.08 Aligned_cols=7 Identities=57% Similarity=1.602 Sum_probs=3.7
Q ss_pred CCCCCCC
Q 023143 8 PYYLPPI 14 (286)
Q Consensus 8 ~~~~~~~ 14 (286)
|||.++|
T Consensus 3 pfw~ppi 9 (12)
T PF08248_consen 3 PFWPPPI 9 (12)
T ss_pred ccCCCCc
Confidence 5664443
No 263
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.46 E-value=70 Score=21.18 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.8
Q ss_pred EEEEEEcCHHHHHHHHHHhCCCcc
Q 023143 77 VAFATFVNHQTAVAALHELNGVKF 100 (286)
Q Consensus 77 ~aFV~F~~~~~A~~A~~~l~g~~~ 100 (286)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 789999999999999998876544
No 264
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=28.29 E-value=1.9e+02 Score=19.49 Aligned_cols=62 Identities=8% Similarity=0.214 Sum_probs=42.6
Q ss_pred EEEcCCCCCCCHHHHHHHhh-------cCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCcc
Q 023143 38 LFVSGLPDDVRAREIHNLFR-------RKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF 100 (286)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~-------~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (286)
|-.++||..+|.++|.+.-. .+.+|.-++--+....++.||+.+=.+.+..+++-+.. |...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 55788999999999865543 34444444444554555668988888988888877654 6655
No 265
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.12 E-value=9.7 Score=34.63 Aligned_cols=74 Identities=8% Similarity=-0.071 Sum_probs=50.0
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+..-|+..++...+++++.-+|..||.|..+.+.+ +.+.-.+||.-.+ .+|.-+|..+--..+++. .+++..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~---~~r~~~ 78 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES---QDRKAV 78 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhh---hhhhhc
Confidence 34467889999999999999999999999888766 2222377877663 345556655444444433 555555
Q ss_pred ec
Q 023143 279 AR 280 (286)
Q Consensus 279 ak 280 (286)
++
T Consensus 79 ~~ 80 (572)
T KOG4365|consen 79 SP 80 (572)
T ss_pred Cc
Confidence 54
No 266
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=25.98 E-value=48 Score=23.44 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCC
Q 023143 1 MAHPPYDPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDV 47 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~ 47 (286)
|.|+||+|-.-|+-.|.+ --.|-+|.||-.+
T Consensus 13 ~vhgpycpar~yGk~D~k----------------f~~VKLGelpaW~ 43 (108)
T KOG4092|consen 13 MVHGPYCPARVYGKKDKK----------------FLEVKLGELPAWI 43 (108)
T ss_pred CCCCCCCCccccccccce----------------eeeeeecccHHHH
Confidence 789999996655544443 3346677777554
No 267
>PF14893 PNMA: PNMA
Probab=25.93 E-value=78 Score=28.14 Aligned_cols=72 Identities=19% Similarity=0.419 Sum_probs=45.2
Q ss_pred CccEEEEccCCCCCCHHHHHHHHh----cCCCceEE--EEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLS----VYPGFNML--KMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~----~~G~v~~v--~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
+-+.|.|.+||.++++.+|.+.+. ..|.+.-. .+.+..+..-|+|+|...=+ . .+=-..|.++ |+.++
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n--~---~~iP~~i~g~-gg~W~ 90 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN--Y---SLIPREIPGK-GGPWR 90 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc--h---hhCchhcCCC-CCceE
Confidence 367799999999999999988654 55654322 12333334578999863221 1 1123456666 77888
Q ss_pred EEEe
Q 023143 276 IEYA 279 (286)
Q Consensus 276 V~~a 279 (286)
|-|-
T Consensus 91 Vv~~ 94 (331)
T PF14893_consen 91 VVFK 94 (331)
T ss_pred EEec
Confidence 7663
No 268
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=25.52 E-value=25 Score=23.27 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=18.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHh
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLF 56 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F 56 (286)
+.-+++||||++|..+-.++=..++
T Consensus 24 s~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HHcCceEEECCCChHHHHcCcchHH
Confidence 5568999999999987666544443
No 269
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=25.42 E-value=86 Score=17.96 Aligned_cols=10 Identities=40% Similarity=0.720 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 023143 6 YDPYYLPPIH 15 (286)
Q Consensus 6 ~~~~~~~~~~ 15 (286)
|+||-.++.+
T Consensus 19 ygpyqp~peq 28 (42)
T PF03875_consen 19 YGPYQPFPEQ 28 (42)
T ss_pred cCCcCCCCCC
Confidence 4555555554
No 270
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=25.15 E-value=2.5e+02 Score=27.06 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=40.7
Q ss_pred CccEEEEc-cCCCCCCHHHHHHHH----hcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcC
Q 023143 202 PCSTLFIA-NLGPNCTEDELKQTL----SVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQ 262 (286)
Q Consensus 202 ~~~~L~v~-NL~~~~te~~L~~~F----~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~ln 262 (286)
.++.+-++ ....+.+.-+|..+| ..+|-|+++.+.- ...+..+++.|.+.++|.+|+..+.
T Consensus 264 dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 264 NGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 34444443 222334556788887 3577888887753 3334578999999999999887754
No 271
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.81 E-value=99 Score=30.79 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=32.8
Q ss_pred CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecccc
Q 023143 239 GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283 (286)
Q Consensus 239 ~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~~ 283 (286)
+..+.|||+|.+...|+.|....++.... .+.+++|-++.
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~~-----~w~~~~APeP~ 342 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNPT-----KWLTEFAPEPR 342 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCCC-----ceEEEecCCcc
Confidence 44579999999999999999987666666 88899887653
No 272
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.10 E-value=1.6e+02 Score=20.20 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=25.2
Q ss_pred CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 229 GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 229 ~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
.|.++ +..+..+||-||+=.+..+...|++.+.+...
T Consensus 33 ~I~Si-~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 33 NIYSI-FAPDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp ---EE-EE-TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred ceEEE-EEeCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 34444 44455779999999999999999988765543
No 273
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=23.81 E-value=27 Score=26.43 Aligned_cols=8 Identities=75% Similarity=1.477 Sum_probs=5.1
Q ss_pred CCCCCCCC
Q 023143 1 MAHPPYDP 8 (286)
Q Consensus 1 ~~~~~~~~ 8 (286)
+||-||||
T Consensus 33 ~Ah~PyDp 40 (131)
T PF04859_consen 33 QAHSPYDP 40 (131)
T ss_pred HhcCCCCH
Confidence 36777766
No 274
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=23.31 E-value=97 Score=22.45 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=18.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCC
Q 023143 2 AHPPYDPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVR 48 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~t 48 (286)
-|+||||=+=|.--+.| -..|-++.||..+.
T Consensus 14 vhGpy~p~ryYGk~Dt~----------------l~dVKLgELpsW~~ 44 (104)
T PF10206_consen 14 VHGPYDPARYYGKKDTP----------------LMDVKLGELPSWLS 44 (104)
T ss_pred ccCCCCchhhcCCCCCc----------------hhheecchhHHHHh
Confidence 49999993323321221 34577888886543
No 275
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=22.75 E-value=3e+02 Score=19.91 Aligned_cols=42 Identities=10% Similarity=0.206 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHH
Q 023143 50 REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAAL 92 (286)
Q Consensus 50 ~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~ 92 (286)
.+|.++.+..| |.+=.|.++...+.-||++++.+.+....+|
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 46678888887 5566666666556669999999766665555
No 276
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=22.21 E-value=45 Score=30.79 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCCCCCC------CCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCeEEEcCCCC-------CCCHHHHHHH
Q 023143 2 AHPPYDP------YYLPPIHPPPPPVPPPP-------------YHHQQQDNGINTLFVSGLPD-------DVRAREIHNL 55 (286)
Q Consensus 2 ~~~~~~~------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~lfV~nLp~-------~~te~~L~~~ 55 (286)
-|+||-| |--|-.+.+-...-+|| +|++|+-- +--||+|+|.. .+++++++.-
T Consensus 43 GhAPyrPRYilPDY~kfl~qGs~fLeL~pp~DldeAln~L~IlY~HVPSVT-~~PVylG~LD~lL~Pfv~~l~eee~~~k 121 (487)
T PF11230_consen 43 GHAPYRPRYILPDYAKFLKQGSEFLELEPPKDLDEALNNLLILYHHVPSVT-SFPVYLGQLDRLLEPFVQGLDEEEAYKK 121 (487)
T ss_pred CCCCCCCceeCccHHHHHhccchhcccCCcccHHHHHHhhhHHhhcCCccC-CccceeccHhhhhcccccCCCHHHHHHH
Confidence 3888866 33344556666666666 77777522 23399999874 3588888765
Q ss_pred hhcC
Q 023143 56 FRRK 59 (286)
Q Consensus 56 F~~~ 59 (286)
.+.|
T Consensus 122 lk~F 125 (487)
T PF11230_consen 122 LKLF 125 (487)
T ss_pred HHHH
Confidence 5544
No 277
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.08 E-value=1.3e+02 Score=25.66 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=25.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~ 68 (286)
....|+|||+.++..-|..+++..-.+....+.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 357799999999999999999776555444333
No 278
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=21.58 E-value=2.5e+02 Score=18.42 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=36.6
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 250 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~ 250 (286)
..+|.|.++.-.-=...+.........|..+.+--.. +.++|.|++
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~--~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK--GTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc--CeEEEEEcC
Confidence 3567888888777778888888888888888776655 569999988
No 279
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=21.20 E-value=2.9e+02 Score=19.10 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=40.1
Q ss_pred EEEccCCCCCCHHHHHHHHhcCC--CceEEEEee-cCCccEEEEEECCHHHHHHHHHhc
Q 023143 206 LFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGL 261 (286)
Q Consensus 206 L~v~NL~~~~te~~L~~~F~~~G--~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~l 261 (286)
-|.--++...+-.+++..++..= .|..|.... ..+..=|||++..-++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34446888999999999998853 445555444 333347999999999998876554
No 280
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=20.69 E-value=2.2e+02 Score=17.52 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=30.4
Q ss_pred EEEccCCCCCCHHHHHHHHhcCC-CceEEEEeecC--CccEEEEEECCHHHHHHHHHhcC
Q 023143 206 LFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQ 262 (286)
Q Consensus 206 L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~~~--~~~~afV~f~~~e~A~~Al~~ln 262 (286)
|.|..-+..-.-.++.++|+.+| .|..+...... +.....+++.+. .....++.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-~~~~l~~~l~ 60 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-VPEEVLEELK 60 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-CCHHHHHHHH
Confidence 34444444445678889998886 45566555532 333455555553 3334444443
No 281
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=20.66 E-value=2.9e+02 Score=25.28 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred CccEEEEcc-CCCCCCHHHHHHHHh----cCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCC
Q 023143 202 PCSTLFIAN-LGPNCTEDELKQTLS----VYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQD 263 (286)
Q Consensus 202 ~~~~L~v~N-L~~~~te~~L~~~F~----~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng 263 (286)
.+..+-++. ...+..--+|..+|. .+|-|.++.+.- ...+...++.|.+.++|.+|+..+..
T Consensus 130 ~G~~~~~~~~~~~~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~ 199 (413)
T TIGR00387 130 DGEILRIGGKTAKDVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA 199 (413)
T ss_pred CCCEEEeCCcccCCCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh
Confidence 355555542 223444456777774 477788777654 23334778899999999999876643
No 282
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.27 E-value=3.3e+02 Score=25.75 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHHHHHHhh----cCCCccEEEEEecCCCC-eeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 49 AREIHNLFR----RKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 49 e~~L~~~F~----~~G~i~~v~i~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
--+|..+|. -+|-|.++.+++..... ....++.|.+.++|.+|+..+....+ .+..+++..
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~-----~p~~~el~d 268 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGI-----IPGGLEMMD 268 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcCC-----CcEEEEeeC
Confidence 346766664 57778888887554332 23778999999999999987654333 244555543
No 283
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.21 E-value=88 Score=29.50 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=31.4
Q ss_pred cEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 242 PVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 242 ~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
.++++.|++.+.+.+|+..++|..+. +..+++..+++
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k---~~~~~~~~~~~ 100 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYK---GFILRVQLGAT 100 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhh---cchhhhhhccc
Confidence 59999999999999999999999988 44777666544
No 284
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.11 E-value=3.7e+02 Score=20.72 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=25.1
Q ss_pred ceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCC
Q 023143 230 FNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 230 v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
|.++. ......||.||+....+++-.++..+.|.
T Consensus 36 i~~i~-vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAIL-APPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEE-ccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 44443 44446799999999889888899887653
No 285
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.02 E-value=3e+02 Score=18.70 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred EEEccCCCCCCHHHHHHHHhcCC--CceEEEEee-cCCccEEEEEECCHHHHHHHHHhc
Q 023143 206 LFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGL 261 (286)
Q Consensus 206 L~v~NL~~~~te~~L~~~F~~~G--~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~l 261 (286)
-|+-.++...+..+++..++..= .|..|.... ..+..-|||++..-++|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 45557899999999999888743 444555444 222347999999988888765544
Done!