Query 023143
Match_columns 286
No_of_seqs 110 out of 1452
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 17:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 2.7E-35 9.1E-40 254.0 26.4 244 30-281 4-282 (282)
2 4f02_A Polyadenylate-binding p 100.0 4.3E-36 1.5E-40 248.7 17.7 167 32-283 12-182 (213)
3 3tyt_A Heterogeneous nuclear r 100.0 5.2E-35 1.8E-39 240.4 18.8 197 33-279 2-204 (205)
4 2adc_A Polypyrimidine tract-bi 100.0 1.5E-34 5.1E-39 242.1 20.5 197 32-283 31-229 (229)
5 3nmr_A Cugbp ELAV-like family 100.0 3.9E-34 1.3E-38 229.1 21.5 167 34-280 2-175 (175)
6 3md3_A Nuclear and cytoplasmic 100.0 1.4E-34 4.7E-39 229.6 18.6 161 36-281 1-166 (166)
7 1qm9_A Polypyrimidine tract-bi 100.0 5.3E-34 1.8E-38 233.3 19.8 195 34-283 2-198 (198)
8 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-33 4.8E-38 224.5 20.7 161 34-279 2-168 (168)
9 1fxl_A Paraneoplastic encephal 100.0 2.9E-33 1E-37 222.2 21.1 160 35-279 2-167 (167)
10 2yh0_A Splicing factor U2AF 65 100.0 5.8E-33 2E-37 226.8 19.3 181 33-285 2-197 (198)
11 2qfj_A FBP-interacting repress 100.0 9.6E-34 3.3E-38 234.6 14.4 175 34-284 27-207 (216)
12 1l3k_A Heterogeneous nuclear r 100.0 1E-32 3.5E-37 225.0 19.2 171 31-284 9-185 (196)
13 1fje_B Nucleolin RBD12, protei 100.0 1E-33 3.5E-38 227.0 11.6 166 30-282 8-174 (175)
14 2g4b_A Splicing factor U2AF 65 100.0 1.9E-32 6.5E-37 218.8 16.6 154 34-279 3-171 (172)
15 2cjk_A Nuclear polyadenylated 100.0 1.3E-32 4.4E-37 218.8 12.5 159 34-282 2-166 (167)
16 3smz_A Protein raver-1, ribonu 100.0 7.9E-31 2.7E-35 226.2 20.4 166 34-283 94-265 (284)
17 3sde_A Paraspeckle component 1 100.0 1.8E-30 6.2E-35 221.4 20.3 157 32-282 19-179 (261)
18 2ghp_A U4/U6 snRNA-associated 100.0 7.4E-31 2.5E-35 227.3 17.1 169 34-283 116-292 (292)
19 2ghp_A U4/U6 snRNA-associated 100.0 1.5E-30 5.1E-35 225.4 17.3 157 32-283 38-198 (292)
20 3smz_A Protein raver-1, ribonu 100.0 7.2E-30 2.5E-34 220.2 19.9 152 34-283 21-176 (284)
21 2i2y_A Fusion protein consists 99.9 1E-23 3.5E-28 164.7 12.8 146 66-284 4-150 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 7.2E-23 2.4E-27 161.2 15.0 79 202-283 69-151 (158)
23 4f25_A Polyadenylate-binding p 99.9 3.1E-23 1.1E-27 154.6 9.9 78 35-115 5-82 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 2.3E-21 7.8E-26 140.4 9.8 78 201-281 17-98 (99)
25 3r27_A HnRNP L, heterogeneous 99.8 3.1E-21 1.1E-25 138.6 9.3 79 200-283 18-98 (100)
26 1wex_A Hypothetical protein (r 99.8 5.4E-20 1.9E-24 134.1 11.1 80 200-284 12-93 (104)
27 3r27_A HnRNP L, heterogeneous 99.8 3.7E-20 1.3E-24 132.9 9.9 81 29-116 15-97 (100)
28 2err_A Ataxin-2-binding protei 99.8 2.5E-20 8.6E-25 137.4 9.2 82 32-116 26-107 (109)
29 1x4f_A Matrin 3; structural ge 99.8 3.6E-20 1.2E-24 136.1 9.9 80 200-284 22-104 (112)
30 3s8s_A Histone-lysine N-methyl 99.8 3.5E-20 1.2E-24 136.7 9.9 79 201-282 4-86 (110)
31 4fxv_A ELAV-like protein 1; RN 99.8 6.1E-20 2.1E-24 132.8 10.9 79 34-115 18-98 (99)
32 4f25_A Polyadenylate-binding p 99.8 2.9E-20 9.8E-25 138.4 9.1 78 203-283 5-84 (115)
33 1sjq_A Polypyrimidine tract-bi 99.8 2E-20 6.8E-25 135.7 7.7 79 201-284 14-94 (105)
34 2lxi_A RNA-binding protein 10; 99.8 1.2E-20 3.9E-25 134.6 5.8 79 203-284 1-85 (91)
35 1x4d_A Matrin 3; structural ge 99.8 3.1E-20 1.1E-24 134.5 8.1 78 201-283 13-93 (102)
36 2cq1_A PTB-like protein L; RRM 99.8 1.2E-19 4E-24 131.5 11.1 80 200-284 12-93 (101)
37 2lkz_A RNA-binding protein 5; 99.8 3.6E-20 1.2E-24 132.7 8.2 77 202-281 8-94 (95)
38 2ad9_A Polypyrimidine tract-bi 99.8 9.5E-20 3.3E-24 135.3 10.3 80 200-284 28-109 (119)
39 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-19 8.4E-24 131.1 12.1 86 200-285 12-100 (105)
40 2dnz_A Probable RNA-binding pr 99.8 2.1E-19 7.2E-24 129.0 11.3 81 201-284 3-87 (95)
41 2e5h_A Zinc finger CCHC-type a 99.8 1.8E-19 6.2E-24 129.1 10.9 78 200-280 13-94 (94)
42 2a3j_A U1 small nuclear ribonu 99.8 1.3E-19 4.4E-24 136.8 10.5 81 200-283 26-111 (127)
43 1x4a_A Splicing factor, argini 99.8 2.7E-19 9.4E-24 131.8 12.0 81 201-284 20-101 (109)
44 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.5E-19 1.2E-23 129.8 12.4 86 30-118 10-95 (103)
45 1sjq_A Polypyrimidine tract-bi 99.8 7.4E-20 2.5E-24 132.7 8.6 77 34-117 15-93 (105)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.8E-24 127.6 9.2 77 201-280 5-85 (85)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-19 3.9E-24 128.2 9.3 79 201-282 4-86 (87)
48 2cq3_A RNA-binding protein 9; 99.8 6.6E-19 2.2E-23 128.4 13.3 86 30-118 10-95 (103)
49 2cpz_A CUG triplet repeat RNA- 99.8 2.2E-19 7.6E-24 133.6 10.9 82 200-284 22-107 (115)
50 2cqi_A Nucleolysin TIAR; RNA r 99.8 3.2E-19 1.1E-23 130.0 11.5 82 200-284 12-95 (103)
51 2do4_A Squamous cell carcinoma 99.8 3.6E-19 1.2E-23 129.1 11.7 82 200-284 14-98 (100)
52 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-18 5E-23 133.5 15.8 89 26-117 33-123 (139)
53 1x5u_A Splicing factor 3B subu 99.8 3.9E-19 1.3E-23 130.0 12.0 82 201-285 13-98 (105)
54 2x1f_A MRNA 3'-END-processing 99.8 1.6E-19 5.4E-24 130.0 9.6 79 202-283 1-83 (96)
55 2e5j_A Methenyltetrahydrofolat 99.8 3.7E-19 1.3E-23 128.3 11.4 80 201-284 17-96 (97)
56 2wbr_A GW182, gawky, LD47780P; 99.8 1.2E-19 4.2E-24 125.8 8.4 74 202-280 6-79 (89)
57 2cq3_A RNA-binding protein 9; 99.8 5.7E-19 1.9E-23 128.7 12.5 82 200-284 12-95 (103)
58 2xnq_A Nuclear polyadenylated 99.8 2.1E-19 7.1E-24 129.6 10.0 79 29-116 16-95 (97)
59 2d9p_A Polyadenylate-binding p 99.8 3.4E-19 1.2E-23 129.9 11.1 81 201-284 13-95 (103)
60 2jvo_A Nucleolar protein 3; nu 99.8 1.8E-19 6.1E-24 132.5 9.6 82 26-116 22-103 (108)
61 2khc_A Testis-specific RNP-typ 99.8 5.5E-19 1.9E-23 132.0 12.4 78 200-280 37-118 (118)
62 1whw_A Hypothetical protein ri 99.8 4.3E-19 1.5E-23 128.4 11.4 81 201-284 6-90 (99)
63 2d9p_A Polyadenylate-binding p 99.8 9.2E-19 3.1E-23 127.6 13.2 87 30-119 10-96 (103)
64 3md1_A Nuclear and cytoplasmic 99.8 2.4E-19 8E-24 125.4 9.6 78 203-283 1-82 (83)
65 2err_A Ataxin-2-binding protei 99.8 1.7E-19 5.9E-24 132.9 9.3 81 200-283 26-108 (109)
66 2cqc_A Arginine/serine-rich sp 99.8 2.3E-19 7.9E-24 128.7 9.7 79 200-281 12-94 (95)
67 1why_A Hypothetical protein ri 99.8 5.6E-19 1.9E-23 127.3 11.7 82 200-284 14-95 (97)
68 1x4d_A Matrin 3; structural ge 99.8 1.5E-19 5E-24 131.0 8.6 80 32-118 12-94 (102)
69 2ad9_A Polypyrimidine tract-bi 99.8 4.6E-19 1.6E-23 131.6 11.4 82 29-117 25-108 (119)
70 1x5s_A Cold-inducible RNA-bind 99.8 4.7E-19 1.6E-23 128.9 11.0 82 200-284 9-94 (102)
71 2cq0_A Eukaryotic translation 99.8 3.4E-19 1.2E-23 129.9 10.1 82 200-284 12-97 (103)
72 2a3j_A U1 small nuclear ribonu 99.8 2.7E-19 9.2E-24 135.1 9.8 86 29-118 23-112 (127)
73 1wex_A Hypothetical protein (r 99.8 8.4E-19 2.9E-23 127.7 12.0 81 30-117 10-92 (104)
74 2cpj_A Non-POU domain-containi 99.8 5.2E-19 1.8E-23 127.9 10.9 80 200-284 12-91 (99)
75 2cq1_A PTB-like protein L; RRM 99.8 8.8E-19 3E-23 126.9 12.0 82 29-117 9-92 (101)
76 2dgo_A Cytotoxic granule-assoc 99.8 6E-19 2E-23 131.2 11.5 82 200-284 12-97 (115)
77 4a8x_A RNA-binding protein wit 99.8 3.9E-19 1.3E-23 125.6 10.0 79 202-283 3-86 (88)
78 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.8E-19 9.5E-24 130.1 9.3 81 201-284 10-94 (102)
79 2dgs_A DAZ-associated protein 99.8 8.4E-19 2.9E-23 126.9 11.8 80 201-284 8-91 (99)
80 2jrs_A RNA-binding protein 39; 99.8 1.7E-18 6E-23 127.2 13.4 85 29-116 20-106 (108)
81 2xnq_A Nuclear polyadenylated 99.8 5E-19 1.7E-23 127.5 10.3 78 200-284 19-97 (97)
82 2dnm_A SRP46 splicing factor; 99.8 4.1E-19 1.4E-23 129.5 10.0 81 201-284 11-95 (103)
83 2la6_A RNA-binding protein FUS 99.8 6.9E-19 2.4E-23 127.3 11.1 78 200-280 10-99 (99)
84 2ytc_A PRE-mRNA-splicing facto 99.8 4.7E-19 1.6E-23 124.5 9.8 75 201-280 10-85 (85)
85 2dnq_A RNA-binding protein 4B; 99.8 7.1E-19 2.4E-23 125.0 10.8 77 201-284 6-82 (90)
86 2dgv_A HnRNP M, heterogeneous 99.8 7.4E-19 2.5E-23 125.3 10.9 83 32-117 5-87 (92)
87 2cpf_A RNA binding motif prote 99.8 5.5E-19 1.9E-23 127.6 10.3 83 33-118 3-90 (98)
88 2cph_A RNA binding motif prote 99.8 1E-18 3.6E-23 128.1 11.9 81 200-283 12-98 (107)
89 2fy1_A RNA-binding motif prote 99.8 8.6E-19 2.9E-23 130.6 11.5 80 202-284 6-88 (116)
90 1x4a_A Splicing factor, argini 99.8 1E-18 3.6E-23 128.6 11.9 85 30-118 17-101 (109)
91 1x5t_A Splicing factor 3B subu 99.8 3.3E-19 1.1E-23 128.2 8.9 80 202-284 4-88 (96)
92 2cpf_A RNA binding motif prote 99.8 2.6E-19 9E-24 129.3 8.5 81 201-284 3-90 (98)
93 2cpx_A Hypothetical protein FL 99.8 8.8E-19 3E-23 130.3 11.5 81 201-284 23-107 (115)
94 2jvr_A Nucleolar protein 3; RN 99.8 2.2E-19 7.6E-24 132.2 8.2 79 202-283 27-106 (111)
95 2cph_A RNA binding motif prote 99.8 1.3E-18 4.5E-23 127.6 12.3 86 30-118 10-99 (107)
96 2dnq_A RNA-binding protein 4B; 99.8 1.3E-18 4.4E-23 123.6 11.9 79 31-118 4-82 (90)
97 2dgp_A Bruno-like 4, RNA bindi 99.8 7.1E-19 2.4E-23 128.8 10.8 85 200-284 10-98 (106)
98 2jrs_A RNA-binding protein 39; 99.8 4.7E-19 1.6E-23 130.3 9.8 80 201-283 24-107 (108)
99 2la6_A RNA-binding protein FUS 99.8 1.7E-18 5.7E-23 125.3 12.6 78 34-114 12-99 (99)
100 2jvo_A Nucleolar protein 3; nu 99.8 3.3E-19 1.1E-23 131.1 9.0 79 200-285 28-106 (108)
101 1p27_B RNA-binding protein 8A; 99.8 7.2E-19 2.5E-23 128.8 10.6 81 201-284 21-105 (106)
102 3s8s_A Histone-lysine N-methyl 99.8 9.8E-19 3.4E-23 128.9 11.3 79 34-115 5-85 (110)
103 2dgv_A HnRNP M, heterogeneous 99.8 6E-19 2.1E-23 125.8 9.9 81 201-284 6-88 (92)
104 2ywk_A Putative RNA-binding pr 99.8 3.9E-19 1.3E-23 127.6 8.6 78 201-281 14-94 (95)
105 2lea_A Serine/arginine-rich sp 99.8 2.5E-19 8.4E-24 137.1 7.8 79 202-283 46-128 (135)
106 2dgx_A KIAA0430 protein; RRM d 99.8 7.2E-19 2.5E-23 126.5 9.7 80 202-284 8-92 (96)
107 1sjr_A Polypyrimidine tract-bi 99.8 9.1E-19 3.1E-23 136.6 11.0 80 203-283 46-125 (164)
108 2kxn_B Transformer-2 protein h 99.8 5.5E-19 1.9E-23 134.1 9.5 81 200-283 43-127 (129)
109 1u6f_A Tcubp1, RNA-binding pro 99.8 4.7E-18 1.6E-22 130.7 14.8 82 200-284 39-124 (139)
110 2cpz_A CUG triplet repeat RNA- 99.8 2.5E-18 8.7E-23 127.8 12.9 86 30-118 20-107 (115)
111 2la4_A Nuclear and cytoplasmic 99.8 4.2E-19 1.4E-23 128.9 8.4 78 31-115 23-100 (101)
112 2la4_A Nuclear and cytoplasmic 99.8 3.6E-19 1.2E-23 129.3 8.0 76 202-282 26-101 (101)
113 1x4f_A Matrin 3; structural ge 99.8 7.6E-19 2.6E-23 129.0 9.7 81 32-119 22-105 (112)
114 1oo0_B CG8781-PA, drosophila Y 99.8 7E-19 2.4E-23 129.8 9.6 81 201-284 24-108 (110)
115 2kvi_A Nuclear polyadenylated 99.8 1E-18 3.5E-23 125.7 10.1 78 200-284 7-85 (96)
116 1whx_A Hypothetical protein ri 99.8 7.6E-19 2.6E-23 129.8 9.6 78 202-284 9-86 (111)
117 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 4.2E-23 122.2 10.2 80 32-114 4-85 (85)
118 2dgt_A RNA-binding protein 30; 99.8 2.3E-18 8E-23 122.8 11.8 79 31-118 6-84 (92)
119 1nu4_A U1A RNA binding domain; 99.8 3.4E-19 1.2E-23 128.4 7.4 81 200-283 5-90 (97)
120 1x4h_A RNA-binding protein 28; 99.8 1.8E-18 6.2E-23 127.7 11.3 81 201-284 13-103 (111)
121 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.3E-18 4.5E-23 122.7 10.0 81 33-116 4-86 (87)
122 3ns6_A Eukaryotic translation 99.8 2.7E-19 9.3E-24 129.7 6.4 78 202-282 5-93 (100)
123 2hvz_A Splicing factor, argini 99.8 6.8E-19 2.3E-23 127.8 8.5 76 36-117 1-76 (101)
124 1whw_A Hypothetical protein ri 99.8 3E-18 1E-22 123.9 11.8 86 30-118 3-90 (99)
125 2do0_A HnRNP M, heterogeneous 99.8 2.2E-18 7.6E-23 127.9 11.3 81 200-283 12-95 (114)
126 2cpd_A Apobec-1 stimulating pr 99.8 2.3E-18 7.8E-23 124.6 11.1 78 200-284 12-91 (99)
127 2dnz_A Probable RNA-binding pr 99.8 3.9E-18 1.3E-22 122.3 12.2 83 33-118 3-87 (95)
128 3ulh_A THO complex subunit 4; 99.8 1.5E-18 5E-23 127.4 10.1 78 201-281 27-107 (107)
129 2div_A TRNA selenocysteine ass 99.8 1.2E-18 4.2E-23 125.9 9.6 80 201-283 7-95 (99)
130 1x5s_A Cold-inducible RNA-bind 99.8 2.6E-18 9.1E-23 124.9 11.4 86 31-119 8-95 (102)
131 3ucg_A Polyadenylate-binding p 99.8 1.2E-18 4E-23 123.4 9.3 79 203-285 6-88 (89)
132 3lqv_A PRE-mRNA branch site pr 99.8 1.5E-18 5.1E-23 129.0 10.1 78 202-282 7-85 (115)
133 1s79_A Lupus LA protein; RRM, 99.8 1.2E-18 4E-23 126.9 9.3 76 202-281 10-88 (103)
134 2dgo_A Cytotoxic granule-assoc 99.8 5.9E-18 2E-22 125.8 13.3 87 29-118 9-97 (115)
135 2dgu_A Heterogeneous nuclear r 99.8 1.6E-18 5.4E-23 126.4 10.0 77 201-284 9-85 (103)
136 2dnh_A Bruno-like 5, RNA bindi 99.8 8.2E-18 2.8E-22 122.9 13.8 84 32-118 12-99 (105)
137 2do4_A Squamous cell carcinoma 99.8 7.9E-18 2.7E-22 121.9 13.6 84 30-116 12-96 (100)
138 2dgx_A KIAA0430 protein; RRM d 99.8 1E-18 3.4E-23 125.7 8.7 80 33-116 7-90 (96)
139 2dgt_A RNA-binding protein 30; 99.8 2.1E-18 7.2E-23 123.0 10.3 77 201-284 8-84 (92)
140 2m2b_A RNA-binding protein 10; 99.8 9.2E-19 3.1E-23 133.3 8.8 81 201-285 21-111 (131)
141 2lkz_A RNA-binding protein 5; 99.8 1E-18 3.5E-23 125.2 8.4 82 31-115 5-94 (95)
142 2cqd_A RNA-binding region cont 99.8 3E-18 1E-22 127.6 11.4 79 200-282 14-96 (116)
143 2dnm_A SRP46 splicing factor; 99.8 2.2E-18 7.5E-23 125.5 10.4 85 31-118 9-95 (103)
144 2diu_A KIAA0430 protein; struc 99.8 1.6E-18 5.6E-23 121.2 9.2 76 200-284 5-86 (96)
145 2fc9_A NCL protein; structure 99.8 1.1E-18 3.9E-23 126.6 8.8 82 200-284 12-93 (101)
146 2cqc_A Arginine/serine-rich sp 99.8 3.4E-18 1.1E-22 122.6 11.1 83 30-115 10-94 (95)
147 2cqp_A RNA-binding protein 12; 99.8 1.1E-18 3.6E-23 126.0 8.5 81 200-283 12-96 (98)
148 2hvz_A Splicing factor, argini 99.8 7.9E-19 2.7E-23 127.5 7.8 77 204-284 1-77 (101)
149 1x5u_A Splicing factor 3B subu 99.8 4.6E-18 1.6E-22 124.2 12.0 85 30-117 10-96 (105)
150 3p5t_L Cleavage and polyadenyl 99.8 3.4E-19 1.2E-23 126.6 5.6 78 204-284 2-85 (90)
151 2cpi_A CCR4-NOT transcription 99.8 9.7E-19 3.3E-23 129.3 8.2 79 202-283 14-102 (111)
152 2khc_A Testis-specific RNP-typ 99.8 2.8E-18 9.6E-23 128.1 10.8 82 30-114 35-118 (118)
153 2dgs_A DAZ-associated protein 99.8 6.6E-18 2.3E-22 122.1 12.4 85 30-118 5-91 (99)
154 2dng_A Eukaryotic translation 99.8 3.2E-18 1.1E-22 124.7 10.7 79 201-284 13-95 (103)
155 1x4g_A Nucleolysin TIAR; struc 99.8 1.5E-18 5.3E-23 127.7 9.1 79 201-284 23-101 (109)
156 2cpe_A RNA-binding protein EWS 99.8 2.4E-18 8.3E-23 127.5 10.2 81 201-284 13-105 (113)
157 2kvi_A Nuclear polyadenylated 99.8 2.7E-18 9.2E-23 123.5 10.1 79 31-118 6-85 (96)
158 2cq4_A RNA binding motif prote 99.8 1.2E-18 4E-23 129.4 8.3 77 202-282 24-104 (114)
159 2cpj_A Non-POU domain-containi 99.8 6.4E-18 2.2E-22 122.2 12.0 79 32-117 12-90 (99)
160 3ex7_B RNA-binding protein 8A; 99.8 2.8E-18 9.4E-23 129.7 10.5 80 201-283 20-103 (126)
161 2wbr_A GW182, gawky, LD47780P; 99.8 1.8E-18 6.2E-23 119.9 8.6 74 34-114 6-79 (89)
162 2lxi_A RNA-binding protein 10; 99.8 3.8E-19 1.3E-23 126.6 5.4 79 35-116 1-83 (91)
163 1x4c_A Splicing factor, argini 99.8 4.7E-18 1.6E-22 124.9 11.4 80 202-284 14-95 (108)
164 2e5i_A Heterogeneous nuclear r 99.8 9.3E-18 3.2E-22 125.6 13.1 80 201-283 21-103 (124)
165 1wi8_A EIF-4B, eukaryotic tran 99.8 3.4E-18 1.2E-22 124.8 10.4 79 201-284 13-96 (104)
166 2cpd_A Apobec-1 stimulating pr 99.8 7.9E-18 2.7E-22 121.7 12.2 79 31-118 11-91 (99)
167 2dhg_A TRNA selenocysteine ass 99.8 1.8E-18 6.1E-23 126.3 8.8 81 201-284 7-92 (104)
168 2dnp_A RNA-binding protein 14; 99.8 2.6E-18 8.8E-23 122.0 9.3 77 201-284 7-83 (90)
169 2cq2_A Hypothetical protein LO 99.8 1.3E-18 4.3E-23 128.0 7.9 80 201-283 23-107 (114)
170 2ytc_A PRE-mRNA-splicing facto 99.8 2.8E-18 9.7E-23 120.4 9.4 76 32-114 9-85 (85)
171 2nlw_A Eukaryotic translation 99.8 2.1E-18 7.1E-23 126.2 9.0 78 202-282 14-100 (105)
172 4a8x_A RNA-binding protein wit 99.8 2.9E-18 9.9E-23 121.1 9.4 81 33-116 2-85 (88)
173 1x5t_A Splicing factor 3B subu 99.8 3.3E-18 1.1E-22 122.9 9.8 83 33-118 3-88 (96)
174 2e5h_A Zinc finger CCHC-type a 99.8 4E-18 1.4E-22 122.0 10.2 80 32-114 13-94 (94)
175 3ulh_A THO complex subunit 4; 99.8 6E-18 2E-22 124.1 11.3 82 30-114 24-106 (107)
176 1p1t_A Cleavage stimulation fa 99.8 1.6E-18 5.4E-23 126.5 8.1 79 202-283 7-89 (104)
177 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.6E-18 8.7E-23 136.1 9.8 79 202-283 71-153 (165)
178 1x5o_A RNA binding motif, sing 99.8 9.3E-18 3.2E-22 124.5 12.2 82 201-282 23-112 (114)
179 1x4h_A RNA-binding protein 28; 99.8 8.1E-18 2.8E-22 124.2 11.9 86 31-119 11-104 (111)
180 3n9u_C Cleavage and polyadenyl 99.8 2.9E-18 1E-22 134.2 9.9 79 34-115 54-136 (156)
181 3md1_A Nuclear and cytoplasmic 99.8 6.6E-18 2.3E-22 117.9 10.7 79 35-116 1-81 (83)
182 3zzy_A Polypyrimidine tract-bi 99.8 3.1E-18 1.1E-22 128.7 9.6 79 203-283 28-107 (130)
183 2x1f_A MRNA 3'-END-processing 99.8 3.9E-18 1.3E-22 122.6 9.7 81 34-117 1-83 (96)
184 2diu_A KIAA0430 protein; struc 99.8 4.3E-18 1.5E-22 119.1 9.5 80 31-121 4-89 (96)
185 2cq0_A Eukaryotic translation 99.8 7.9E-18 2.7E-22 122.6 11.5 84 31-117 11-96 (103)
186 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.6E-18 1.6E-22 123.6 10.1 84 32-118 9-94 (102)
187 2dgp_A Bruno-like 4, RNA bindi 99.8 7.1E-18 2.4E-22 123.5 11.1 87 32-118 10-98 (106)
188 2ywk_A Putative RNA-binding pr 99.8 4.6E-18 1.6E-22 121.9 9.8 82 31-115 12-94 (95)
189 1x4c_A Splicing factor, argini 99.8 8.1E-18 2.8E-22 123.7 11.3 78 32-117 12-94 (108)
190 2kt5_A RNA and export factor-b 99.8 7.6E-18 2.6E-22 126.9 11.4 80 201-283 33-115 (124)
191 1p27_B RNA-binding protein 8A; 99.8 1E-17 3.5E-22 122.6 11.6 82 32-116 20-103 (106)
192 2dgu_A Heterogeneous nuclear r 99.8 5E-18 1.7E-22 123.7 9.8 78 32-118 8-85 (103)
193 2krb_A Eukaryotic translation 99.7 1.6E-18 5.3E-23 120.7 6.8 71 203-276 1-80 (81)
194 1x4g_A Nucleolysin TIAR; struc 99.7 7E-18 2.4E-22 124.2 10.6 81 32-119 22-102 (109)
195 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.5E-18 5.3E-23 125.7 6.9 78 201-283 17-99 (100)
196 2dnp_A RNA-binding protein 14; 99.7 4.8E-18 1.6E-22 120.6 9.3 76 32-116 6-81 (90)
197 1h2v_Z 20 kDa nuclear CAP bind 99.7 6.4E-18 2.2E-22 132.5 11.0 81 200-283 36-120 (156)
198 1wf1_A RNA-binding protein RAL 99.7 8.3E-18 2.9E-22 124.0 10.9 75 202-283 26-101 (110)
199 1whx_A Hypothetical protein ri 99.7 2.5E-18 8.7E-23 127.0 8.2 80 32-118 7-86 (111)
200 2cqh_A IGF-II mRNA-binding pro 99.7 2.3E-18 7.9E-23 123.1 7.5 78 201-284 6-85 (93)
201 1x4e_A RNA binding motif, sing 99.7 5.2E-19 1.8E-23 124.2 4.0 78 201-281 3-84 (85)
202 2cqh_A IGF-II mRNA-binding pro 99.7 7.2E-18 2.5E-22 120.4 10.0 79 31-117 4-84 (93)
203 2e44_A Insulin-like growth fac 99.7 7.4E-18 2.5E-22 121.1 10.1 79 202-283 14-93 (96)
204 2div_A TRNA selenocysteine ass 99.7 9.1E-18 3.1E-22 121.3 10.6 83 31-116 5-94 (99)
205 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1E-18 3.6E-23 126.6 5.7 80 32-116 16-98 (100)
206 2kxn_B Transformer-2 protein h 99.7 5.4E-18 1.8E-22 128.6 9.8 85 29-116 40-126 (129)
207 3n9u_C Cleavage and polyadenyl 99.7 3.4E-18 1.2E-22 133.8 9.0 78 202-282 54-137 (156)
208 1why_A Hypothetical protein ri 99.7 1.6E-17 5.6E-22 119.6 11.8 82 30-116 12-93 (97)
209 3zzy_A Polypyrimidine tract-bi 99.7 9.6E-18 3.3E-22 126.1 10.9 81 34-120 27-110 (130)
210 2rs2_A Musashi-1, RNA-binding 99.7 4.1E-18 1.4E-22 125.4 8.8 87 27-117 17-105 (109)
211 1fjc_A Nucleolin RBD2, protein 99.7 2.1E-18 7.3E-23 124.0 7.0 81 200-284 13-93 (96)
212 2ek1_A RNA-binding protein 12; 99.7 1.4E-18 4.7E-23 124.7 5.9 78 201-281 13-94 (95)
213 3lqv_A PRE-mRNA branch site pr 99.7 7.9E-18 2.7E-22 125.1 10.2 80 33-116 6-85 (115)
214 2fy1_A RNA-binding motif prote 99.7 2E-17 6.9E-22 123.1 12.1 83 32-117 4-87 (116)
215 3d2w_A TAR DNA-binding protein 99.7 5.2E-18 1.8E-22 120.2 8.5 81 200-286 8-88 (89)
216 2dis_A Unnamed protein product 99.7 8.4E-18 2.9E-22 123.7 9.8 80 201-283 6-93 (109)
217 2dh8_A DAZ-associated protein 99.7 4E-18 1.4E-22 124.6 8.0 81 200-284 13-97 (105)
218 2cpi_A CCR4-NOT transcription 99.7 5.1E-18 1.7E-22 125.4 8.6 83 32-117 12-102 (111)
219 2dgw_A Probable RNA-binding pr 99.7 1.3E-17 4.5E-22 118.6 10.4 78 202-284 9-89 (91)
220 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.2E-17 4.2E-22 128.3 11.1 77 200-279 60-140 (140)
221 2rs2_A Musashi-1, RNA-binding 99.7 7.4E-18 2.5E-22 124.1 9.4 80 201-284 23-106 (109)
222 1x5p_A Negative elongation fac 99.7 1.8E-17 6E-22 119.4 11.2 77 201-284 13-89 (97)
223 3p5t_L Cleavage and polyadenyl 99.7 2.9E-18 1E-22 121.8 6.9 78 36-116 2-83 (90)
224 2cpe_A RNA-binding protein EWS 99.7 1.5E-17 5.1E-22 123.2 11.0 85 31-118 11-105 (113)
225 3ex7_B RNA-binding protein 8A; 99.7 9.7E-18 3.3E-22 126.7 10.2 85 31-118 18-104 (126)
226 3s7r_A Heterogeneous nuclear r 99.7 9.2E-18 3.2E-22 118.3 9.4 75 201-279 9-87 (87)
227 2dhg_A TRNA selenocysteine ass 99.7 1.6E-17 5.5E-22 121.1 10.9 85 31-118 5-92 (104)
228 2do0_A HnRNP M, heterogeneous 99.7 2.7E-17 9.2E-22 122.0 12.3 83 31-116 11-94 (114)
229 1p1t_A Cleavage stimulation fa 99.7 6.1E-18 2.1E-22 123.4 8.6 82 32-116 5-88 (104)
230 1oo0_B CG8781-PA, drosophila Y 99.7 1.1E-17 3.6E-22 123.4 9.9 84 31-117 22-107 (110)
231 2jwn_A Embryonic polyadenylate 99.7 7.7E-18 2.6E-22 126.9 9.2 79 202-284 35-117 (124)
232 3egn_A RNA-binding protein 40; 99.7 7.7E-18 2.6E-22 130.1 9.3 81 200-283 42-131 (143)
233 2fc8_A NCL protein; structure 99.7 6.1E-18 2.1E-22 123.0 8.1 82 200-284 12-94 (102)
234 1wg1_A KIAA1579 protein, homol 99.7 5.2E-18 1.8E-22 120.0 7.5 76 202-283 4-79 (88)
235 2mss_A Protein (musashi1); RNA 99.7 5.2E-18 1.8E-22 116.1 7.3 71 205-279 1-75 (75)
236 2cq4_A RNA binding motif prote 99.7 6.3E-18 2.1E-22 125.5 8.1 81 32-116 22-104 (114)
237 1x4b_A Heterogeneous nuclear r 99.7 8.9E-18 3.1E-22 125.0 9.0 79 202-284 26-108 (116)
238 3ns6_A Eukaryotic translation 99.7 7.3E-18 2.5E-22 122.1 8.2 80 33-115 4-92 (100)
239 2cqp_A RNA-binding protein 12; 99.7 1.5E-17 5.2E-22 119.9 9.9 81 32-115 12-94 (98)
240 2dng_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 119.3 11.7 82 32-118 12-95 (103)
241 3ucg_A Polyadenylate-binding p 99.7 1.4E-17 4.7E-22 117.9 9.4 79 34-116 5-85 (89)
242 2ki2_A SS-DNA binding protein 99.7 2.3E-18 7.7E-23 122.3 5.2 77 204-284 2-82 (90)
243 1wf1_A RNA-binding protein RAL 99.7 3.7E-17 1.3E-21 120.5 11.8 76 32-116 24-100 (110)
244 2cpx_A Hypothetical protein FL 99.7 3.3E-17 1.1E-21 121.7 11.7 83 31-118 21-107 (115)
245 1wi8_A EIF-4B, eukaryotic tran 99.7 1.6E-17 5.3E-22 121.2 9.6 81 33-118 13-96 (104)
246 1sjr_A Polypyrimidine tract-bi 99.7 2.5E-17 8.7E-22 128.4 11.4 81 34-117 45-125 (164)
247 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.8E-18 2.7E-22 115.8 7.4 72 204-279 1-76 (77)
248 2nlw_A Eukaryotic translation 99.7 2E-17 6.7E-22 121.0 9.8 81 32-115 12-99 (105)
249 2kt5_A RNA and export factor-b 99.7 1.9E-16 6.5E-21 119.2 15.5 83 31-116 31-114 (124)
250 2cpy_A RNA-binding protein 12; 99.7 1.3E-17 4.6E-22 123.7 9.0 78 201-282 13-94 (114)
251 1wel_A RNA-binding protein 12; 99.7 1E-17 3.5E-22 126.2 8.4 77 202-282 24-104 (124)
252 2jvr_A Nucleolar protein 3; RN 99.7 8E-18 2.7E-22 123.8 7.6 79 33-116 26-105 (111)
253 2cq2_A Hypothetical protein LO 99.7 6.3E-18 2.2E-22 124.2 7.0 81 31-115 21-105 (114)
254 2krb_A Eukaryotic translation 99.7 5.2E-18 1.8E-22 118.0 6.1 73 35-110 1-80 (81)
255 3s7r_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 115.3 10.4 80 30-113 6-87 (87)
256 1nu4_A U1A RNA binding domain; 99.7 9.8E-18 3.4E-22 120.7 7.7 83 31-117 4-90 (97)
257 2cqg_A TDP-43, TAR DNA-binding 99.7 3E-17 1E-21 119.5 10.4 78 201-283 13-94 (103)
258 2cqd_A RNA-binding region cont 99.7 3.6E-17 1.2E-21 121.7 11.0 86 27-116 9-96 (116)
259 3pgw_S U1-70K; protein-RNA com 99.7 2.6E-18 8.8E-23 155.9 5.5 79 202-283 101-183 (437)
260 3tyt_A Heterogeneous nuclear r 99.7 1.5E-17 5.1E-22 136.2 9.5 78 201-282 2-80 (205)
261 2ek1_A RNA-binding protein 12; 99.7 1.2E-17 4E-22 119.8 7.8 81 32-115 12-94 (95)
262 2e44_A Insulin-like growth fac 99.7 3.5E-17 1.2E-21 117.5 10.2 83 29-116 9-92 (96)
263 2e5i_A Heterogeneous nuclear r 99.7 1.4E-16 4.6E-21 119.3 13.8 78 34-118 22-104 (124)
264 1s79_A Lupus LA protein; RRM, 99.7 1.8E-17 6.2E-22 120.6 8.7 81 32-116 8-89 (103)
265 2e5j_A Methenyltetrahydrofolat 99.7 6.2E-17 2.1E-21 116.5 11.4 79 32-116 16-94 (97)
266 2i2y_A Fusion protein consists 99.7 2.9E-17 9.8E-22 127.9 10.3 80 31-116 69-148 (150)
267 1fj7_A Nucleolin RBD1, protein 99.7 7.5E-18 2.6E-22 122.2 6.4 79 202-284 16-97 (101)
268 1wg1_A KIAA1579 protein, homol 99.7 3.4E-17 1.2E-21 115.7 9.5 78 33-118 3-80 (88)
269 2dis_A Unnamed protein product 99.7 2.6E-17 8.8E-22 121.1 9.0 84 31-117 4-93 (109)
270 2cqg_A TDP-43, TAR DNA-binding 99.7 1.3E-16 4.6E-21 116.0 12.7 85 29-118 9-95 (103)
271 1x5p_A Negative elongation fac 99.7 1.4E-16 4.7E-21 114.7 12.4 77 32-117 12-88 (97)
272 1fjc_A Nucleolin RBD2, protein 99.7 2.7E-17 9.1E-22 118.2 8.6 82 29-116 10-91 (96)
273 2fc9_A NCL protein; structure 99.7 2.8E-17 9.5E-22 119.2 8.8 81 31-117 11-92 (101)
274 2dh8_A DAZ-associated protein 99.7 4E-17 1.4E-21 119.2 9.7 85 30-118 11-97 (105)
275 1wg5_A Heterogeneous nuclear r 99.7 7.5E-17 2.6E-21 117.6 11.0 77 202-282 14-94 (104)
276 2m2b_A RNA-binding protein 10; 99.7 3E-17 1E-21 124.8 9.2 83 30-116 18-108 (131)
277 2db1_A Heterogeneous nuclear r 99.7 2.3E-17 7.9E-22 123.2 8.3 77 202-282 16-98 (118)
278 2e5g_A U6 snRNA-specific termi 99.7 4.1E-17 1.4E-21 116.8 9.3 79 31-116 4-82 (94)
279 2dgw_A Probable RNA-binding pr 99.7 1.3E-16 4.5E-21 113.3 11.8 81 31-116 6-87 (91)
280 2jwn_A Embryonic polyadenylate 99.7 9.5E-18 3.2E-22 126.4 6.2 81 33-117 34-116 (124)
281 1x4e_A RNA binding motif, sing 99.7 5.5E-18 1.9E-22 119.0 4.4 79 33-114 3-83 (85)
282 2fc8_A NCL protein; structure 99.7 8.9E-17 3E-21 116.7 10.7 81 32-118 12-94 (102)
283 1x5o_A RNA binding motif, sing 99.7 1.8E-16 6.1E-21 117.5 12.5 86 30-115 20-111 (114)
284 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.1E-16 3.9E-21 125.3 11.9 83 32-117 36-120 (156)
285 2f3j_A RNA and export factor b 99.7 8E-17 2.7E-21 128.7 11.1 81 200-283 85-168 (177)
286 2bz2_A Negative elongation fac 99.7 7E-17 2.4E-21 121.0 10.1 76 201-283 37-112 (121)
287 2db1_A Heterogeneous nuclear r 99.7 8.7E-17 3E-21 120.0 10.5 82 30-115 12-97 (118)
288 2mss_A Protein (musashi1); RNA 99.7 2.4E-17 8.3E-22 112.8 6.9 73 37-113 1-75 (75)
289 2e5g_A U6 snRNA-specific termi 99.7 5E-17 1.7E-21 116.3 8.7 78 202-284 7-84 (94)
290 2hgl_A HNRPF protein, heteroge 99.7 3.2E-17 1.1E-21 125.0 8.0 77 202-282 43-125 (136)
291 2kn4_A Immunoglobulin G-bindin 99.7 1.1E-16 3.7E-21 125.7 11.2 83 32-117 67-151 (158)
292 2lmi_A GRSF-1, G-rich sequence 99.7 3E-17 1E-21 120.4 7.3 77 202-282 10-92 (107)
293 3q2s_C Cleavage and polyadenyl 99.7 3.4E-17 1.2E-21 136.3 8.5 78 202-282 67-150 (229)
294 1wg5_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 115.7 11.2 83 30-116 10-94 (104)
295 3egn_A RNA-binding protein 40; 99.7 5.2E-17 1.8E-21 125.4 8.7 82 31-116 41-130 (143)
296 2dnn_A RNA-binding protein 12; 99.7 5.8E-17 2E-21 119.0 8.4 75 202-281 15-92 (109)
297 1x4b_A Heterogeneous nuclear r 99.7 7E-17 2.4E-21 120.1 9.0 83 32-118 24-108 (116)
298 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-16 4.1E-21 116.1 9.7 76 202-282 14-92 (102)
299 1fj7_A Nucleolin RBD1, protein 99.7 2.1E-17 7E-22 119.9 5.6 81 31-116 13-95 (101)
300 2hgl_A HNRPF protein, heteroge 99.7 9.7E-17 3.3E-21 122.4 9.5 82 30-115 39-124 (136)
301 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.2E-16 4.2E-21 122.7 10.2 80 31-113 59-140 (140)
302 2lea_A Serine/arginine-rich sp 99.7 2.9E-17 1E-21 125.5 6.6 83 32-117 44-128 (135)
303 2lcw_A RNA-binding protein FUS 99.5 2E-18 6.8E-23 128.6 0.0 81 201-284 5-97 (116)
304 2ki2_A SS-DNA binding protein 99.7 1.7E-17 6E-22 117.7 4.9 78 36-117 2-81 (90)
305 4f02_A Polyadenylate-binding p 99.7 8.1E-17 2.8E-21 132.7 9.4 79 201-282 13-95 (213)
306 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.2E-17 1.8E-21 111.6 6.9 74 36-113 1-76 (77)
307 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.2E-16 7.7E-21 124.8 11.1 84 32-118 69-154 (165)
308 1iqt_A AUF1, heterogeneous nuc 99.7 3.4E-17 1.2E-21 112.0 5.6 71 205-279 1-75 (75)
309 3beg_B Splicing factor, argini 99.7 7E-17 2.4E-21 120.0 7.3 75 32-114 13-92 (115)
310 3beg_B Splicing factor, argini 99.7 1E-16 3.5E-21 119.0 8.2 74 202-281 15-93 (115)
311 1wez_A HnRNP H', FTP-3, hetero 99.7 2.6E-16 8.7E-21 114.3 10.0 80 32-116 12-92 (102)
312 2pe8_A Splicing factor 45; RRM 99.7 2.4E-16 8.2E-21 114.9 9.7 78 201-281 6-93 (105)
313 1wel_A RNA-binding protein 12; 99.7 1.8E-16 6.2E-21 119.3 9.3 81 32-116 22-104 (124)
314 2cpy_A RNA-binding protein 12; 99.7 2E-16 7E-21 117.3 8.7 81 32-116 12-94 (114)
315 2bz2_A Negative elongation fac 99.7 4.5E-16 1.6E-20 116.5 10.6 78 31-117 35-112 (121)
316 3u1l_A PRE-mRNA-splicing facto 99.7 1.4E-16 4.6E-21 132.4 8.4 82 200-283 131-230 (240)
317 2xs2_A Deleted in azoospermia- 99.7 7.9E-17 2.7E-21 117.0 6.1 77 202-283 8-87 (102)
318 1fxl_A Paraneoplastic encephal 99.7 3E-16 1E-20 123.6 9.6 79 202-283 1-83 (167)
319 2dit_A HIV TAT specific factor 99.7 7.1E-16 2.4E-20 113.9 11.0 79 201-282 13-102 (112)
320 1b7f_A Protein (SXL-lethal pro 99.7 2.6E-16 8.9E-21 124.3 9.2 79 202-283 2-84 (168)
321 2hzc_A Splicing factor U2AF 65 99.7 2.7E-16 9.2E-21 110.7 8.0 70 202-277 5-85 (87)
322 1wf0_A TDP-43, TAR DNA-binding 99.7 1.3E-16 4.4E-21 112.7 6.0 78 33-118 3-80 (88)
323 3q2s_C Cleavage and polyadenyl 99.6 3E-16 1E-20 130.6 9.0 80 34-116 67-150 (229)
324 2hzc_A Splicing factor U2AF 65 99.6 2.6E-16 9E-21 110.7 7.3 72 33-112 4-86 (87)
325 2f3j_A RNA and export factor b 99.6 9.7E-16 3.3E-20 122.4 11.5 82 32-116 85-167 (177)
326 3d2w_A TAR DNA-binding protein 99.6 3.6E-16 1.2E-20 110.6 8.0 75 34-116 10-84 (89)
327 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-15 4.7E-20 130.5 13.2 79 31-114 203-281 (282)
328 1wf0_A TDP-43, TAR DNA-binding 99.6 2.4E-16 8.1E-21 111.3 6.9 77 202-284 4-80 (88)
329 2dnn_A RNA-binding protein 12; 99.6 3.4E-16 1.2E-20 114.8 7.6 79 32-115 13-92 (109)
330 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.2E-21 122.2 5.3 76 202-282 45-123 (139)
331 2dha_A FLJ20171 protein; RRM d 99.6 2.2E-16 7.5E-21 118.3 6.4 76 202-281 22-104 (123)
332 2lmi_A GRSF-1, G-rich sequence 99.6 2.3E-16 7.7E-21 115.7 6.3 81 31-115 7-91 (107)
333 3nmr_A Cugbp ELAV-like family 99.6 1.3E-15 4.6E-20 120.9 11.3 83 32-114 92-175 (175)
334 2adc_A Polypyrimidine tract-bi 99.6 5.1E-16 1.7E-20 129.3 9.0 79 200-282 31-110 (229)
335 2hgm_A HNRPF protein, heteroge 99.6 6E-16 2.1E-20 116.2 8.1 75 202-281 41-120 (126)
336 3u1l_A PRE-mRNA-splicing facto 99.6 6.2E-16 2.1E-20 128.4 8.9 79 32-117 131-230 (240)
337 1iqt_A AUF1, heterogeneous nuc 99.6 1.7E-16 6E-21 108.4 4.5 73 37-113 1-75 (75)
338 2lcw_A RNA-binding protein FUS 99.4 2.8E-17 9.5E-22 122.3 0.0 83 32-117 4-96 (116)
339 2dha_A FLJ20171 protein; RRM d 99.6 1.1E-15 3.8E-20 114.5 8.2 78 33-114 21-103 (123)
340 2xs2_A Deleted in azoospermia- 99.6 7E-16 2.4E-20 112.0 6.8 81 32-117 6-87 (102)
341 2g4b_A Splicing factor U2AF 65 99.6 3.1E-15 1.1E-19 118.6 10.6 78 33-113 92-171 (172)
342 3md3_A Nuclear and cytoplasmic 99.6 4.6E-15 1.6E-19 116.7 11.5 81 31-114 83-165 (166)
343 2yh0_A Splicing factor U2AF 65 99.6 8.5E-15 2.9E-19 118.7 13.3 82 32-116 111-194 (198)
344 2dnl_A Cytoplasmic polyadenyla 99.6 2.3E-15 7.7E-20 111.6 8.8 76 30-111 3-83 (114)
345 1qm9_A Polypyrimidine tract-bi 99.6 1.7E-15 5.7E-20 123.2 8.3 76 203-282 3-79 (198)
346 3pgw_S U1-70K; protein-RNA com 99.6 3.6E-15 1.2E-19 135.2 11.0 82 32-116 99-182 (437)
347 3v4m_A Splicing factor U2AF 65 99.6 2.9E-15 9.8E-20 109.2 8.4 78 201-281 3-96 (105)
348 1l3k_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 120.9 9.4 77 202-282 12-92 (196)
349 2hgn_A Heterogeneous nuclear r 99.6 5.7E-16 1.9E-20 118.5 4.4 80 32-116 43-123 (139)
350 2pe8_A Splicing factor 45; RRM 99.6 7.3E-15 2.5E-19 107.0 10.0 81 33-116 6-94 (105)
351 2hgm_A HNRPF protein, heteroge 99.6 2.1E-15 7.3E-20 113.2 7.3 79 32-115 39-120 (126)
352 2dnl_A Cytoplasmic polyadenyla 99.6 3.1E-15 1E-19 110.9 7.9 63 202-265 7-79 (114)
353 2j8a_A Histone-lysine N-methyl 99.6 2.6E-15 8.8E-20 111.1 7.1 76 204-282 3-96 (136)
354 2qfj_A FBP-interacting repress 99.6 1.3E-14 4.5E-19 119.2 12.3 82 33-117 123-206 (216)
355 2voo_A Lupus LA protein; RNA-b 99.6 4.6E-15 1.6E-19 120.2 8.8 78 202-283 108-188 (193)
356 3tht_A Alkylated DNA repair pr 99.6 6.2E-15 2.1E-19 128.7 10.1 79 200-280 15-97 (345)
357 2dit_A HIV TAT specific factor 99.6 1.7E-14 5.8E-19 106.5 10.9 81 33-118 13-104 (112)
358 3sde_A Paraspeckle component 1 99.6 1.3E-14 4.6E-19 123.1 10.2 76 201-281 20-95 (261)
359 2cjk_A Nuclear polyadenylated 99.6 7.8E-15 2.7E-19 115.7 7.9 79 34-116 86-166 (167)
360 1fje_B Nucleolin RBD12, protei 99.5 8.2E-15 2.8E-19 116.6 7.9 79 32-116 96-174 (175)
361 2j8a_A Histone-lysine N-methyl 99.5 1.6E-14 5.6E-19 106.8 7.9 78 36-116 3-96 (136)
362 3s6e_A RNA-binding protein 39; 99.5 2.6E-14 8.9E-19 105.4 8.9 77 202-281 6-92 (114)
363 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.1E-13 3.6E-18 99.7 11.3 76 203-284 10-92 (100)
364 3tht_A Alkylated DNA repair pr 99.5 2.5E-14 8.5E-19 124.9 9.2 80 31-114 14-97 (345)
365 3ue2_A Poly(U)-binding-splicin 99.5 2.6E-14 8.9E-19 106.1 7.8 77 202-281 19-108 (118)
366 2voo_A Lupus LA protein; RNA-b 99.5 6.7E-14 2.3E-18 113.3 9.9 79 34-116 108-187 (193)
367 3v4m_A Splicing factor U2AF 65 99.5 4.6E-14 1.6E-18 102.7 7.5 82 32-116 2-97 (105)
368 3ue2_A Poly(U)-binding-splicin 99.5 1.3E-13 4.6E-18 102.2 8.7 79 34-115 19-108 (118)
369 1jmt_A Splicing factor U2AF 35 99.5 2.1E-14 7.2E-19 104.4 3.2 68 209-279 21-103 (104)
370 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.1E-12 1.1E-16 92.0 12.0 76 34-117 9-91 (100)
371 1jmt_A Splicing factor U2AF 35 99.4 1.9E-13 6.3E-18 99.4 3.5 71 40-113 20-103 (104)
372 2dnr_A Synaptojanin-1; RRM dom 99.4 3.1E-12 1.1E-16 88.6 8.4 76 199-282 3-86 (91)
373 1owx_A Lupus LA protein, SS-B, 99.4 4.5E-12 1.5E-16 93.6 9.7 75 200-279 15-93 (121)
374 3s6e_A RNA-binding protein 39; 99.3 7.8E-12 2.7E-16 92.0 9.3 78 34-116 6-93 (114)
375 1owx_A Lupus LA protein, SS-B, 99.3 1.5E-11 5.3E-16 90.7 10.4 76 32-114 15-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.2 8.2E-11 2.8E-15 81.5 7.1 74 32-115 4-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 3.4E-11 1.2E-15 83.8 4.8 74 198-279 10-92 (95)
378 3dxb_A Thioredoxin N-terminall 99.0 1.9E-09 6.5E-14 88.9 9.7 75 203-280 124-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 99.0 1.9E-09 6.5E-14 75.0 7.1 73 31-113 11-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.7 2.8E-08 9.4E-13 81.9 8.3 79 35-116 124-213 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 2.3E-07 8E-12 65.8 7.5 71 203-278 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.4 1.6E-06 5.5E-11 61.5 7.6 72 34-112 20-96 (117)
383 1wey_A Calcipressin 1; structu 98.3 1E-06 3.5E-11 62.3 6.2 73 203-280 5-82 (104)
384 1uw4_A UPF3X; nonsense mediate 98.3 6.8E-06 2.3E-10 57.1 9.4 77 204-280 2-86 (91)
385 1whv_A Poly(A)-specific ribonu 98.0 3.2E-05 1.1E-09 53.7 8.2 54 36-96 17-70 (100)
386 1wey_A Calcipressin 1; structu 98.0 2.4E-05 8.3E-10 55.3 7.6 73 35-114 5-82 (104)
387 1uw4_A UPF3X; nonsense mediate 97.9 0.00011 3.7E-09 51.0 9.5 78 36-113 2-85 (91)
388 3ctr_A Poly(A)-specific ribonu 97.8 3E-05 1E-09 54.0 5.5 53 37-96 8-60 (101)
389 2l08_A Regulator of nonsense t 97.7 5.4E-05 1.8E-09 52.9 5.7 78 203-280 9-94 (97)
390 2dhx_A Poly (ADP-ribose) polym 97.7 0.00029 1E-08 49.5 8.4 54 203-260 8-66 (104)
391 2dhx_A Poly (ADP-ribose) polym 97.6 0.00048 1.6E-08 48.4 9.0 72 32-113 5-81 (104)
392 1whv_A Poly(A)-specific ribonu 97.5 0.0005 1.7E-08 47.7 7.7 55 203-262 16-70 (100)
393 1wwh_A Nucleoporin 35, nucleop 97.4 0.00073 2.5E-08 49.0 7.5 71 34-114 23-93 (119)
394 1wwh_A Nucleoporin 35, nucleop 97.2 0.0016 5.4E-08 47.3 7.6 62 202-267 23-84 (119)
395 2l08_A Regulator of nonsense t 97.0 0.00057 1.9E-08 47.7 3.7 78 35-113 9-93 (97)
396 3ctr_A Poly(A)-specific ribonu 97.0 0.0015 5.1E-08 45.5 5.6 55 203-262 6-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 96.9 0.0005 1.7E-08 62.0 3.1 56 203-260 53-108 (464)
398 3pq1_A Poly(A) RNA polymerase; 96.7 0.00089 3.1E-08 60.4 3.7 54 36-93 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 95.8 0.013 4.4E-07 43.1 5.0 73 203-280 7-97 (132)
400 3d45_A Poly(A)-specific ribonu 94.8 0.068 2.3E-06 49.0 7.6 56 35-97 440-495 (507)
401 3p3d_A Nucleoporin 53; structu 93.4 0.091 3.1E-06 38.6 4.3 72 34-113 6-96 (132)
402 3d45_A Poly(A)-specific ribonu 91.7 0.48 1.7E-05 43.3 7.8 57 203-264 440-496 (507)
403 2g0c_A ATP-dependent RNA helic 78.7 2.1 7.3E-05 27.8 3.6 67 205-280 2-75 (76)
404 2f9f_A First mannosyl transfer 75.6 7 0.00024 29.5 6.4 49 14-62 3-51 (177)
405 4eyt_A Telomerase associated p 72.9 19 0.00064 24.2 8.8 56 202-261 11-66 (129)
406 4e8u_A Putative uncharacterize 68.7 12 0.00041 28.7 6.0 49 38-87 15-74 (172)
407 2bn5_B U1 small nuclear ribonu 60.5 7.9 0.00027 18.7 2.3 16 11-26 2-17 (26)
408 2g0c_A ATP-dependent RNA helic 60.4 30 0.001 22.1 6.1 68 37-114 2-75 (76)
409 4e8u_A Putative uncharacterize 47.0 35 0.0012 26.0 5.2 46 206-251 15-72 (172)
410 3fry_A Probable copper-exporti 39.8 58 0.002 20.0 4.9 55 35-94 6-60 (73)
411 4bby_A Alkyldihydroxyacetoneph 33.2 29 0.001 32.6 3.5 53 209-261 349-408 (658)
412 4a4j_A Pacszia, cation-transpo 27.7 61 0.0021 19.4 3.4 55 204-260 4-61 (69)
413 2e7g_A Putative ribosome-bindi 27.6 76 0.0026 22.8 4.2 35 227-261 43-78 (129)
414 4eyt_A Telomerase associated p 25.7 1.5E+02 0.0052 19.8 8.1 57 33-95 10-66 (129)
415 3fut_A Dimethyladenosine trans 24.2 59 0.002 26.7 3.5 32 36-68 111-142 (271)
416 2lfv_A Protein DAMX; cell divi 25.8 21 0.00073 24.9 0.0 52 47-99 34-88 (106)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=2.7e-35 Score=254.02 Aligned_cols=244 Identities=17% Similarity=0.264 Sum_probs=154.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (286)
++..++++|||+|||.++++++|+ ++|+.||.|.+|++...+ ..++||||+|.+.++|.+|++.|||..|. |
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALRSMQGFPFY---D 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC-CcceEEEEEECCHHHHHHHHHHhcCCeeC---C
Confidence 456679999999999999999976 999999999999887432 34569999999999999999999999998 9
Q ss_pred CeEEEEEeecCCCCCcCCCCCCceecccccccccccccC-----------CCCCCCCCCC-CCCCCCCCCCCCC------
Q 023143 106 SVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQES-----------SSADGDSDTD-EASPVRNIDSADK------ 167 (286)
Q Consensus 106 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~------ 167 (286)
+.|+|+|++........ ..+.................. ......+... ............+
T Consensus 80 ~~l~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAK-MKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred cEEEEEEeccCcchhhh-hcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 99999999765543222 111111111110000000000 0000000000 0000000000000
Q ss_pred --CCC-CCCCccccC--CCCCCCC--------ccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEE
Q 023143 168 --GDF-VTTQSERAT--DSGNAVA--------PINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLK 234 (286)
Q Consensus 168 --~~~-~~p~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~ 234 (286)
... ..|...+.. .+....+ ..............+++++|||+|||..+++++|+++|++||.|.+|+
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 000 000000000 0000000 000000111223455789999999999999999999999999999999
Q ss_pred EeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 235 MRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 235 ~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
+..++ +|||||+|.+.++|.+|++.|||..+. +|+.|+|+|||.
T Consensus 239 ~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v~~akk 282 (282)
T 3pgw_A 239 LVPGR-HDIAFVEFDNEVQAGAARDALQGFKIT--QNNAMKISFAKK 282 (282)
T ss_pred EecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeC--CCCEEEEEEecC
Confidence 99755 589999999999999999999999998 144999999984
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.3e-36 Score=248.75 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=142.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..++++|||+|||+++|+++|+++|+.||.|.+|+|..+.. ..++||||+|.+.++|.+|++.+++..+. |+.++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~---g~~i~ 88 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK---GKPVR 88 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC---Ccccc
Confidence 34678999999999999999999999999999999985432 23559999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccc
Q 023143 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (286)
Q Consensus 110 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (286)
+.++.......
T Consensus 89 ~~~~~~~~~~~--------------------------------------------------------------------- 99 (213)
T 4f02_A 89 IMWSQRDPSLR--------------------------------------------------------------------- 99 (213)
T ss_dssp EEECCCCTHHH---------------------------------------------------------------------
T ss_pred ccccccccccc---------------------------------------------------------------------
Confidence 88764321100
Q ss_pred cCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 190 EQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 190 ~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.....+|||+|||.++|+++|+++|++||.|..|+++. +.++|||||+|.+.++|.+|++.|||..|.
T Consensus 100 ----------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 100 ----------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp ----------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred ----------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 00256799999999999999999999999999999987 335789999999999999999999999999
Q ss_pred CCCCCcEEEEEecccc
Q 023143 268 SSDRGGMHIEYARSKM 283 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~~ 283 (286)
|+.|+|+||+.+.
T Consensus 170 ---g~~i~V~~a~~~~ 182 (213)
T 4f02_A 170 ---DRKVFVGRFKSRK 182 (213)
T ss_dssp ---TEECEEEECCCHH
T ss_pred ---CEEEEEEEcCCCc
Confidence 5599999998653
No 3
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=5.2e-35 Score=240.44 Aligned_cols=197 Identities=13% Similarity=0.144 Sum_probs=144.5
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 33 NGINTLFVSGLP-DDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 33 ~~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.++++|||+||| ..+++++|+++|+.||.|.+|++..+.++ ||||+|.+.++|.+|++.|||..+. |++|+|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g---~afV~f~~~~~A~~Ai~~lng~~~~---g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG---AAMVEMADGYAVDRAITHLNNNFMF---GQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTT---CEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CceEEEE
Confidence 468999999999 89999999999999999999999844444 9999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
+++......+. . . ...... ...... .. ........+.
T Consensus 76 ~s~~~~~~p~~---~-~-------~~~~~~-~~~~~~--~~------------~~~~r~~~~~----------------- 112 (205)
T 3tyt_A 76 VSKQPAIMPGQ---S-Y-------GLEDGS-CSYKDF--SE------------SRNNRFSTPE----------------- 112 (205)
T ss_dssp ECSCSCCCCCS---C-C-------BCTTSC-BSEEEC--TT------------CTTCSCSSHH-----------------
T ss_pred EccCCccCCCc---c-c-------ccccCC-cccccc--CC------------CccccccCcc-----------------
Confidence 98654321110 0 0 000000 000000 00 0000000000
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCc--eEEEEeec--CCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGF--NMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v--~~v~~~~~--~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
........+|+++|||+|||.++|+++|+++|++||.| ..+++... ..+|+|||+|.+.++|.+||..|||..|.
T Consensus 113 -~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~ 191 (205)
T 3tyt_A 113 -QAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMK 191 (205)
T ss_dssp -HHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEEC
T ss_pred -cccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCcc
Confidence 00001123568999999999999999999999999999 89998874 34589999999999999999999999999
Q ss_pred CCCCC-cEEEEEe
Q 023143 268 SSDRG-GMHIEYA 279 (286)
Q Consensus 268 ~~~g~-~l~V~~a 279 (286)
++++. ++.|.||
T Consensus 192 g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 192 NPNGPYPYTLKLC 204 (205)
T ss_dssp CSSSSSCEECEEE
T ss_pred CCCCCcceEEEec
Confidence 87433 7777775
No 4
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=1.5e-34 Score=242.10 Aligned_cols=197 Identities=20% Similarity=0.315 Sum_probs=148.9
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..++++|||+|||. ++++++|+++|+.||.|..|++....++ ||||+|.+.++|.+|++.|+|..+. |+.|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g---~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE---NALVQMADGNQAQLAMSHLNGHKLH---GKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSC---CEEEEESCHHHHHHHHHHHTTCBCS---SSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCC---EEEEEECCHHHHHHHHHHhCCCeEC---CeEEEE
Confidence 45789999999999 9999999999999999999999855444 9999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcccc
Q 023143 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINE 190 (286)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 190 (286)
++++.......+.. ... . ..... .... . ......+.
T Consensus 105 ~~a~~~~~~~~~~~-~~~----~--~~~~~----~~~~-------~----------~~~~~~~~---------------- 140 (229)
T 2adc_A 105 TLSKHQNVQLPREG-QED----Q--GLTKD----YGNS-------P----------LHRFKKPG---------------- 140 (229)
T ss_dssp ECCSCCCCCCCCSS-SST----T--TTEEE----CTTC-------S----------SCCCCSTT----------------
T ss_pred EEecCccccCcccc-ccc----c--ccccc----cccC-------c----------ccccCCcc----------------
Confidence 99875433221100 000 0 00000 0000 0 00000000
Q ss_pred CCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 191 QSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 191 ~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
........+++++|||+|||..+++++|+++|++|| .|..|++... +++||||+|.+.++|.+|++.|||..+.
T Consensus 141 --~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~-- 215 (229)
T 2adc_A 141 --SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLG-- 215 (229)
T ss_dssp --SGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSS--
T ss_pred --ccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccC--
Confidence 001112245689999999999999999999999999 9999999653 3589999999999999999999999997
Q ss_pred CCCcEEEEEecccc
Q 023143 270 DRGGMHIEYARSKM 283 (286)
Q Consensus 270 ~g~~l~V~~ak~~~ 283 (286)
+|+.|+|+||+.++
T Consensus 216 ~g~~l~v~~a~~~i 229 (229)
T 2adc_A 216 ENHHLRVSFSKSTI 229 (229)
T ss_dssp SSCBCEEEECSSCC
T ss_pred CCCeEEEEEecCCC
Confidence 14499999999864
No 5
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.9e-34 Score=229.06 Aligned_cols=167 Identities=17% Similarity=0.277 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC----CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG----NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~----~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
++++|||+|||.++|+++|+++|+.||.|.+|++.....+ .++||||+|.+.++|.+|++.|+|..+....++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999855433 355999999999999999999999888544567777
Q ss_pred EEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccc
Q 023143 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (286)
Q Consensus 110 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (286)
+.++......
T Consensus 82 ~~~~~~~~~~---------------------------------------------------------------------- 91 (175)
T 3nmr_A 82 MKPADSEKNN---------------------------------------------------------------------- 91 (175)
T ss_dssp EEECGGGCCS----------------------------------------------------------------------
T ss_pred Eccccccccc----------------------------------------------------------------------
Confidence 7765432100
Q ss_pred cCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec---CCccEEEEEECCHHHHHHHHHhcCCCcc
Q 023143 190 EQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTL 266 (286)
Q Consensus 190 ~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~Al~~lng~~~ 266 (286)
..+.++|||+|||.++|+++|+++|++||.|..+++... .++|||||+|.+.++|.+|++.|||..+
T Consensus 92 ----------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 92 ----------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp ----------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred ----------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 013778999999999999999999999999999999873 4567999999999999999999999988
Q ss_pred CCCCCCcEEEEEec
Q 023143 267 PSSDRGGMHIEYAR 280 (286)
Q Consensus 267 ~~~~g~~l~V~~ak 280 (286)
.+..++.|+|+||.
T Consensus 162 ~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 162 MEGCSSPMVVKFAD 175 (175)
T ss_dssp CTTCSSCCEEEECC
T ss_pred cCCCCCCeEEEecC
Confidence 74335799999983
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=229.62 Aligned_cols=161 Identities=19% Similarity=0.319 Sum_probs=140.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
|+|||+|||.++|+++|+++|+.||.|.+|++.....+ .++||||+|.+.++|.+|++.++|..+. |+.+.|.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE---NNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC---CCeeEEEEcC
Confidence 68999999999999999999999999999999744322 3459999999999999999999999998 9999999874
Q ss_pred cCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCC
Q 023143 115 SNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEK 194 (286)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 194 (286)
.....
T Consensus 78 ~~~~~--------------------------------------------------------------------------- 82 (166)
T 3md3_A 78 QSQQS--------------------------------------------------------------------------- 82 (166)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 32100
Q ss_pred CCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCC
Q 023143 195 PYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 270 (286)
Q Consensus 195 ~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~ 270 (286)
...++++|||+|||.++++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|++.|||..+.
T Consensus 83 ----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 155 (166)
T 3md3_A 83 ----SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN--- 155 (166)
T ss_dssp ----CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---
T ss_pred ----CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---
Confidence 012478899999999999999999999999999999986 345779999999999999999999999998
Q ss_pred CCcEEEEEecc
Q 023143 271 RGGMHIEYARS 281 (286)
Q Consensus 271 g~~l~V~~ak~ 281 (286)
|+.|+|+||+.
T Consensus 156 g~~i~v~~a~~ 166 (166)
T 3md3_A 156 GRPLRINWAAK 166 (166)
T ss_dssp TEECEEEESCC
T ss_pred CcEEEEEecCC
Confidence 56999999973
No 7
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=5.3e-34 Score=233.34 Aligned_cols=195 Identities=20% Similarity=0.320 Sum_probs=147.7
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 34 GINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 34 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
.+++|||+|||. ++++++|+++|+.||.|..|++....++ ||||+|.+.++|.+|++.|+|..+. |+.|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g---~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE---NALVQMADGNQAQLAMSHLNGHKLH---GKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSS---CCEEECTTTHHHHHHHHHHTTCCCS---SCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhCCCeec---CeEEEEEE
Confidence 478999999999 9999999999999999999998854444 9999999999999999999999998 99999999
Q ss_pred eecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCC
Q 023143 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQS 192 (286)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (286)
+........... ... ...... ... . . ......+ .
T Consensus 76 a~~~~~~~~~~~-~~~------~~~~~~----~~~-----~--~----------~~r~~~~------------------~ 109 (198)
T 1qm9_A 76 SKHQNVQLPREG-QED------QGLTKD----YGN-----S--P----------LHRFKKP------------------G 109 (198)
T ss_dssp CCCCSCCCSSSS-SSS------SSCEEE----SSC-----C--C----------TTSSSSC------------------C
T ss_pred ecCCCcCCCCcC-Ccc------cccccc----ccC-----C--c----------hhhccCc------------------c
Confidence 876543221100 000 000000 000 0 0 0000000 0
Q ss_pred CCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 193 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 193 ~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
........+++++|||+|||..+++++|+++|++|| .|..+++... ++|+|||+|.+.++|.+|++.|||..+. +|
T Consensus 110 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g 186 (198)
T 1qm9_A 110 SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLG--EN 186 (198)
T ss_dssp CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCS--SC
T ss_pred ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccC--CC
Confidence 001122245799999999999999999999999999 9999999663 2589999999999999999999999997 24
Q ss_pred CcEEEEEecccc
Q 023143 272 GGMHIEYARSKM 283 (286)
Q Consensus 272 ~~l~V~~ak~~~ 283 (286)
+.|+|+|++.++
T Consensus 187 ~~l~v~~a~~~i 198 (198)
T 1qm9_A 187 HHLRVSFSKSTI 198 (198)
T ss_dssp CSCCEEEECCCC
T ss_pred CeEEEEeecccC
Confidence 499999999864
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.4e-33 Score=224.48 Aligned_cols=161 Identities=22% Similarity=0.337 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
++++|||+|||.++++++|+++|+.||.|..|++...... .++||||+|.+.++|.+|++.++|..+. |+.|.|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR---NKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC---CcEEEEE
Confidence 4789999999999999999999999999999988754322 2349999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++.....
T Consensus 79 ~~~~~~~------------------------------------------------------------------------- 85 (168)
T 1b7f_A 79 YARPGGE------------------------------------------------------------------------- 85 (168)
T ss_dssp ECCCCSS-------------------------------------------------------------------------
T ss_pred ecCCCcc-------------------------------------------------------------------------
Confidence 8753210
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
..+.++|||+|||..+++++|+++|++||.|..+++... .++|||||+|.+.++|.+|++.|||..+.
T Consensus 86 --------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 157 (168)
T 1b7f_A 86 --------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPE 157 (168)
T ss_dssp --------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCT
T ss_pred --------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEec
Confidence 013678999999999999999999999999999999873 34679999999999999999999999998
Q ss_pred CCCCCcEEEEEe
Q 023143 268 SSDRGGMHIEYA 279 (286)
Q Consensus 268 ~~~g~~l~V~~a 279 (286)
+. ++.|+|+||
T Consensus 158 g~-~~~l~V~~A 168 (168)
T 1b7f_A 158 GG-SQPLSVRLA 168 (168)
T ss_dssp TC-SSCCEEEEC
T ss_pred CC-CeEEEEEeC
Confidence 53 479999997
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.9e-33 Score=222.17 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=139.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
+++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..+. |+.|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ---TKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC---CceEEEEe
Confidence 6899999999999999999999999999999998543 223459999999999999999999999998 99999998
Q ss_pred eecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCC
Q 023143 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQS 192 (286)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 192 (286)
+.....
T Consensus 79 ~~~~~~-------------------------------------------------------------------------- 84 (167)
T 1fxl_A 79 ARPSSA-------------------------------------------------------------------------- 84 (167)
T ss_dssp CCCCCG--------------------------------------------------------------------------
T ss_pred cCCCcc--------------------------------------------------------------------------
Confidence 753210
Q ss_pred CCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 193 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 193 ~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
..+.++|||+|||..+++++|+++|++||.|..+++... .++|||||+|.+.++|.+|++.|||..+.+
T Consensus 85 -------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 157 (167)
T 1fxl_A 85 -------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG 157 (167)
T ss_dssp -------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred -------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC
Confidence 013677999999999999999999999999999999873 356899999999999999999999999985
Q ss_pred CCCCcEEEEEe
Q 023143 269 SDRGGMHIEYA 279 (286)
Q Consensus 269 ~~g~~l~V~~a 279 (286)
+ ...|+|+||
T Consensus 158 ~-~~~i~v~~A 167 (167)
T 1fxl_A 158 A-TEPITVKFA 167 (167)
T ss_dssp C-SSCCEEEEC
T ss_pred C-ccceEEEeC
Confidence 4 346999997
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=5.8e-33 Score=226.83 Aligned_cols=181 Identities=17% Similarity=0.267 Sum_probs=141.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRK----P-------GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
..+++|||+|||.++|+++|+++|+.| | .|..+.+. ..++ ||||+|.+.++|.+|+ .|+|..|.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g---~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN---FAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTT---EEEEEESCSHHHHHHG-GGTTEEET
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCC---EEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 458999999999999999999999999 4 55555554 3444 9999999999999999 89999998
Q ss_pred CCCCCeEEEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q 023143 102 PQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDS 181 (286)
Q Consensus 102 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 181 (286)
|+.|+|.++......... . .. ... ..+.
T Consensus 77 ---g~~i~v~~~~~~~~~~~~---~------------~~----~~~-----------------------~~~~------- 104 (198)
T 2yh0_A 77 ---GQSLKIRRPHDYQPLPGM---S------------EN----PSV-----------------------YVPG------- 104 (198)
T ss_dssp ---TEEEEEECCCCCCCCCCS---S------------SC----SSC-----------------------CCTT-------
T ss_pred ---CceEEEeCCCCCCCCCCC---c------------CC----CcC-----------------------CCCC-------
Confidence 999999987643211100 0 00 000 0000
Q ss_pred CCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHH
Q 023143 182 GNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIA 257 (286)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A 257 (286)
........+.++|||+|||..+++++|+++|++||.|..+++... .++|||||+|.+.++|.+|
T Consensus 105 ------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A 172 (198)
T 2yh0_A 105 ------------VVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 172 (198)
T ss_dssp ------------SSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHH
T ss_pred ------------CccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHH
Confidence 000111235899999999999999999999999999999999874 3468999999999999999
Q ss_pred HHhcCCCccCCCCCCcEEEEEeccccCC
Q 023143 258 MEGLQDSTLPSSDRGGMHIEYARSKMRK 285 (286)
Q Consensus 258 l~~lng~~~~~~~g~~l~V~~ak~~~~~ 285 (286)
++.|||..+. |+.|+|+||+.+.++
T Consensus 173 ~~~l~g~~~~---g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 173 IAGLNGMQLG---DKKLLVQRASVGAKN 197 (198)
T ss_dssp HHHHTTCEET---TEECEEEESCCCCCC
T ss_pred HHHcCCCEEC---CEEEEEEECCCCCCC
Confidence 9999999998 569999999987653
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=9.6e-34 Score=234.57 Aligned_cols=175 Identities=11% Similarity=0.196 Sum_probs=142.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
++++|||+|||.++|+++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..|. |+.|.|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG---GRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC---CeeEEEe
Confidence 56899999999999999999999999999999987432 123449999999999999999999999998 9999997
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++........ . .... .
T Consensus 104 ~~~~~~~~~~------------~---~~~~---~---------------------------------------------- 119 (216)
T 2qfj_A 104 RPSNIGQAQP------------I---IDQL---A---------------------------------------------- 119 (216)
T ss_dssp CCSCCGGGHH------------H---HHHH---H----------------------------------------------
T ss_pred cCCCccccch------------h---hhhh---h----------------------------------------------
Confidence 6543211000 0 0000 0
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
....+.++|||+|||.++++++|+++|++||.|..|++... .++|||||+|.+.++|.+|++.|||..|+
T Consensus 120 ------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~ 193 (216)
T 2qfj_A 120 ------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG 193 (216)
T ss_dssp ------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred ------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC
Confidence 00124789999999999999999999999999999999874 45789999999999999999999999998
Q ss_pred CCCCCcEEEEEeccccC
Q 023143 268 SSDRGGMHIEYARSKMR 284 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~~~ 284 (286)
|+.|+|+||+.+..
T Consensus 194 ---g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 194 ---GQYLRVGKAVTPPM 207 (216)
T ss_dssp ---SSBCEEEECSSCSS
T ss_pred ---CcEEEEEEecCCCC
Confidence 55999999998754
No 12
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1e-32 Score=224.99 Aligned_cols=171 Identities=17% Similarity=0.280 Sum_probs=139.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...++++|||+|||.++|+++|+++|+.||.|.+|++..... ..++||||+|.+.++|.+|++. ++..+. |+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~---g~~l 84 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD---GRVV 84 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC---CEEe
Confidence 355789999999999999999999999999999999985432 2355999999999999999976 889898 9999
Q ss_pred EEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcc
Q 023143 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (286)
Q Consensus 109 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (286)
.|.++.........
T Consensus 85 ~v~~~~~~~~~~~~------------------------------------------------------------------ 98 (196)
T 1l3k_A 85 EPKRAVSREDSQRP------------------------------------------------------------------ 98 (196)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred eeecccCccccccc------------------------------------------------------------------
Confidence 99987542110000
Q ss_pred ccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCC
Q 023143 189 NEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
....+.++|||+|||.++|+++|+++|+.||.|..|++... .++|||||+|.+.++|.+|++. +|.
T Consensus 99 ---------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~ 168 (196)
T 1l3k_A 99 ---------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH 168 (196)
T ss_dssp -------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC
T ss_pred ---------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCc
Confidence 00124689999999999999999999999999999999873 4578999999999999999987 799
Q ss_pred ccCCCCCCcEEEEEeccccC
Q 023143 265 TLPSSDRGGMHIEYARSKMR 284 (286)
Q Consensus 265 ~~~~~~g~~l~V~~ak~~~~ 284 (286)
.+. |+.|.|+||..+.+
T Consensus 169 ~~~---G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 169 TVN---GHNCEVRKALSKQE 185 (196)
T ss_dssp EET---TEECEEEECC----
T ss_pred EEC---CEEEEEEecCChhH
Confidence 998 55999999987643
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1e-33 Score=227.02 Aligned_cols=166 Identities=20% Similarity=0.260 Sum_probs=137.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEe-cCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY-TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
+...+.++|||+|||.++|+++|+++|+.||.+..+.+.. .....++||||+|.+.++|.+|++ |+|..+. |+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l 83 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEI 83 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEET---TEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeC---CeEE
Confidence 3456789999999999999999999999999875522221 111123399999999999999995 9999998 9999
Q ss_pred EEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCcc
Q 023143 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (286)
Q Consensus 109 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 188 (286)
.|.++......
T Consensus 84 ~v~~~~~~~~~--------------------------------------------------------------------- 94 (175)
T 1fje_B 84 KLEKPKGRDSK--------------------------------------------------------------------- 94 (175)
T ss_dssp EEECCCCSSCS---------------------------------------------------------------------
T ss_pred EEecCCCcccc---------------------------------------------------------------------
Confidence 99987542100
Q ss_pred ccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 189 NEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 189 ~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
...++++|||+|||.++++++|+++|++||.|..+ ...+.++|||||+|.+.++|.+|++.|||..+.
T Consensus 95 ----------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~- 162 (175)
T 1fje_B 95 ----------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID- 162 (175)
T ss_dssp ----------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEET-
T ss_pred ----------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC-
Confidence 01147899999999999999999999999999877 444778899999999999999999999999999
Q ss_pred CCCCcEEEEEeccc
Q 023143 269 SDRGGMHIEYARSK 282 (286)
Q Consensus 269 ~~g~~l~V~~ak~~ 282 (286)
|+.|+|+||+.+
T Consensus 163 --g~~i~v~~a~~k 174 (175)
T 1fje_B 163 --GRSVSLYYTGEK 174 (175)
T ss_dssp --TEEEEEEECSSC
T ss_pred --CeEEEEEecCCC
Confidence 569999999876
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.9e-32 Score=218.83 Aligned_cols=154 Identities=18% Similarity=0.349 Sum_probs=133.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCC
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRK----P-------GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (286)
++++|||+|||.++|+++|+++|+.| | .|..+++. ..++ ||||+|.+.++|.+|+ .++|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g---~afV~f~~~~~A~~A~-~~~~~~~~- 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN---FAFLEFRSVDETTQAM-AFDGIIFQ- 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTT---EEEEEESSHHHHHHHG-GGTTCEET-
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCC---EEEEEeCCHHHHHHHH-HhCCcEec-
Confidence 57999999999999999999999999 6 66666665 3444 9999999999999999 89999998
Q ss_pred CCCCeEEEEEeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 023143 103 QSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSG 182 (286)
Q Consensus 103 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 182 (286)
|+.|.|.++.....
T Consensus 77 --g~~i~v~~~~~~~~---------------------------------------------------------------- 90 (172)
T 2g4b_A 77 --GQSLKIRRPHDYQP---------------------------------------------------------------- 90 (172)
T ss_dssp --TEECEEECCSSCCC----------------------------------------------------------------
T ss_pred --CceeeecCCcccCC----------------------------------------------------------------
Confidence 99999986432100
Q ss_pred CCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHH
Q 023143 183 NAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAM 258 (286)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al 258 (286)
....++|||+|||..+++++|+++|++||.|..+++... .++|||||+|.+.++|.+|+
T Consensus 91 -----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 91 -----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp -----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred -----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 012677999999999999999999999999999999874 34689999999999999999
Q ss_pred HhcCCCccCCCCCCcEEEEEe
Q 023143 259 EGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 259 ~~lng~~~~~~~g~~l~V~~a 279 (286)
+.|||..+. |+.|+|+||
T Consensus 154 ~~l~g~~~~---g~~l~V~~A 171 (172)
T 2g4b_A 154 AGLNGMQLG---DKKLLVQRA 171 (172)
T ss_dssp HHHTTCEET---TEECEEEEC
T ss_pred HHcCCCEEC---CeEEEEEeC
Confidence 999999999 559999997
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.3e-32 Score=218.78 Aligned_cols=159 Identities=12% Similarity=0.206 Sum_probs=135.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
++++|||+|||.++|+++|+++|+.||.|.+|++.... ...++||||+|.+.++|.+|++. +..+. |+.+.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD---GKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET---TEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC---CeEcccc
Confidence 57999999999999999999999999999999987442 22345999999999999999984 56776 8888777
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++.....
T Consensus 77 ~~~~~~~------------------------------------------------------------------------- 83 (167)
T 2cjk_A 77 RAIPRDE------------------------------------------------------------------------- 83 (167)
T ss_dssp ECCCHHH-------------------------------------------------------------------------
T ss_pred cccchhh-------------------------------------------------------------------------
Confidence 6532100
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
..+.++|||+|||.++++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|++ +||..+.
T Consensus 84 --------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 154 (167)
T 2cjk_A 84 --------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK 154 (167)
T ss_dssp --------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS
T ss_pred --------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC
Confidence 00266899999999999999999999999999999876 4567899999999999999998 8999999
Q ss_pred CCCCCcEEEEEeccc
Q 023143 268 SSDRGGMHIEYARSK 282 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~ 282 (286)
|+.|+|+||+.+
T Consensus 155 ---g~~i~V~~a~pk 166 (167)
T 2cjk_A 155 ---DRKIEIKRAEPR 166 (167)
T ss_dssp ---SSCEEEEECCCC
T ss_pred ---CeEEEEeecCCC
Confidence 559999999875
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.9e-31 Score=226.22 Aligned_cols=166 Identities=18% Similarity=0.249 Sum_probs=143.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+.++|||+|||.++++++|+++|+.||.|..+++..... ..++||||+|.+.++|.+|++.|+|..+. |+.|.|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG---PRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 468999999999999999999999999999999875432 23559999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++...... .
T Consensus 171 ~a~~~~~~--~--------------------------------------------------------------------- 179 (284)
T 3smz_A 171 WTDAGQLT--P--------------------------------------------------------------------- 179 (284)
T ss_dssp ECCGGGCC--T---------------------------------------------------------------------
T ss_pred ECCCCCCC--c---------------------------------------------------------------------
Confidence 97542100 0
Q ss_pred CCCCCCCCCCCccEEEEccCCCCC-CHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNC-TEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~-te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
...++++|||+|||.++ ++++|+++|+.||.|..+++.. +.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 180 -------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 180 -------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp -------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred -------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 01247889999999995 9999999999999999999887 445789999999999999999999999998
Q ss_pred CCCCCcEEEEEecccc
Q 023143 268 SSDRGGMHIEYARSKM 283 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~~ 283 (286)
|+.|+|+|++.+.
T Consensus 253 ---g~~l~v~~a~~~~ 265 (284)
T 3smz_A 253 ---GSHLRVSFCAPGP 265 (284)
T ss_dssp ---TEECEEEECCSSS
T ss_pred ---CeEEEEEEecCCC
Confidence 5699999998764
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.8e-30 Score=221.42 Aligned_cols=157 Identities=22% Similarity=0.269 Sum_probs=138.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..++++|||+|||.++|+++|+++|+.||.|..|.+. ..++ ||||+|.+.++|.+|++.++|..+. |+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg---~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRG---FGFIRLESRTLAEIAKAELDGTILK---SRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTT---EEEEECSSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCc---EEEEEECCHHHHHHHHHHcCCcEEC---CceeEee
Confidence 4567899999999999999999999999999999987 4455 9999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++.
T Consensus 92 ~a~----------------------------------------------------------------------------- 94 (261)
T 3sde_A 92 FAT----------------------------------------------------------------------------- 94 (261)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 863
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcC-CCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQ-DSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~ln-g~~~~ 267 (286)
++++|||+|||..+|+++|+++|+.||.|..|++.. +.++|||||+|.+.++|.+|++.|| |..+.
T Consensus 95 ----------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 95 ----------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp ----------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred ----------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 145799999999999999999999999999999887 3457899999999999999999995 44444
Q ss_pred CCCCCcEEEEEeccc
Q 023143 268 SSDRGGMHIEYARSK 282 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~ 282 (286)
...+++|.|.+++..
T Consensus 165 ~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 165 TTTPRPVIVEPMEQF 179 (261)
T ss_dssp SSSCCBCEEEECCCE
T ss_pred cCCCceEEEeecccc
Confidence 334679999998754
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.4e-31 Score=227.31 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=140.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC-CccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKP-GFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+.++|||+|||..+++++|+++|+.|| .|..|++.....+ .++||||+|.+.++|.+|++.|+|..+. |+.|.|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE---GYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 478999999999999999999999999 9999988743211 3449999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++.......+.
T Consensus 193 ~a~~~~~~~~~--------------------------------------------------------------------- 203 (292)
T 2ghp_A 193 VSNPLEKSKRT--------------------------------------------------------------------- 203 (292)
T ss_dssp ECCCC---------------------------------------------------------------------------
T ss_pred ECCCCcccccc---------------------------------------------------------------------
Confidence 88643211000
Q ss_pred CCCCCCCCCCCccEEEEccCCCC-CCHHHHHHHHhcCCCceEEEEee-----cCCccEEEEEECCHHHHHHHHHhcCCCc
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRA-----RGGMPVAFADFEEVEQASIAMEGLQDST 265 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~-~te~~L~~~F~~~G~v~~v~~~~-----~~~~~~afV~f~~~e~A~~Al~~lng~~ 265 (286)
.....++++|||+|||.+ +++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|+ .|||..
T Consensus 204 -----~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~ 277 (292)
T 2ghp_A 204 -----DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSL 277 (292)
T ss_dssp --------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEE
T ss_pred -----cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCE
Confidence 000225889999999999 99999999999999999999986 445789999999999999999 999999
Q ss_pred cCCCCCCcEEEEEecccc
Q 023143 266 LPSSDRGGMHIEYARSKM 283 (286)
Q Consensus 266 ~~~~~g~~l~V~~ak~~~ 283 (286)
|. |+.|+|+||+.+.
T Consensus 278 ~~---g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 278 LG---NREISVSLADKKP 292 (292)
T ss_dssp ET---TEEEEEEECCCCC
T ss_pred EC---CcEEEEEEecCCC
Confidence 99 5699999999863
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.5e-30 Score=225.37 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=137.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..++++|||+|||.++|+++|+++|+.||.|..|++..+..++++||||+|.+.++|.+|++ ++|..+. |+.|.|.
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~---g~~i~v~ 113 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVG---QNEIIVS 113 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEET---TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeC---CcEEEEE
Confidence 55789999999999999999999999999999999987655567799999999999999995 9999998 9999998
Q ss_pred EeecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccC
Q 023143 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQ 191 (286)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 191 (286)
++
T Consensus 114 ~~------------------------------------------------------------------------------ 115 (292)
T 2ghp_A 114 HL------------------------------------------------------------------------------ 115 (292)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred EC------------------------------------------------------------------------------
Confidence 62
Q ss_pred CCCCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 192 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 192 ~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
+.++|||+|||..+++++|+++|+.|| .|..|++.. +.++|||||+|.+.++|.+|++.|||..+.
T Consensus 116 ----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 116 ----------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE 185 (292)
T ss_dssp ----------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred ----------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 167899999999999999999999999 999999977 447889999999999999999999999998
Q ss_pred CCCCCcEEEEEecccc
Q 023143 268 SSDRGGMHIEYARSKM 283 (286)
Q Consensus 268 ~~~g~~l~V~~ak~~~ 283 (286)
|+.|.|.|+..+.
T Consensus 186 ---g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 186 ---GYTLVTKVSNPLE 198 (292)
T ss_dssp ---TEECEEEECCCC-
T ss_pred ---CcEEEEEECCCCc
Confidence 5699999987553
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.2e-30 Score=220.20 Aligned_cols=152 Identities=20% Similarity=0.376 Sum_probs=137.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
++++|||+|||.++|+++|+++|+.|| |..|.+. ..++ ||||+|.+.++|.+|++.|+|..+. |+.|.|+++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~-~~~g---~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~v~~~ 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-KYKG---TAFVTLLNGEQAEAAINAFHQSRLR---ERELSVQLQ 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHTTCEET---TEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe-cCCC---EEEEEeCCHHHHHHHHHHcCCCeeC---CeEEEEEec
Confidence 578999999999999999999999999 9888884 4445 9999999999999999999999998 999999862
Q ss_pred ecCCCCCcCCCCCCceecccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCC
Q 023143 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSE 193 (286)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (286)
.
T Consensus 93 ~------------------------------------------------------------------------------- 93 (284)
T 3smz_A 93 P------------------------------------------------------------------------------- 93 (284)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 194 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 194 ~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
+.++|||+|||.++++++|+++|+.||.|..+++.. +.++|||||+|.+.++|.+|++.|||..+.
T Consensus 94 --------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~-- 163 (284)
T 3smz_A 94 --------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG-- 163 (284)
T ss_dssp --------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred --------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC--
Confidence 146799999999999999999999999999999876 445789999999999999999999999998
Q ss_pred CCCcEEEEEecccc
Q 023143 270 DRGGMHIEYARSKM 283 (286)
Q Consensus 270 ~g~~l~V~~ak~~~ 283 (286)
|+.|.|.|++.+.
T Consensus 164 -g~~i~v~~a~~~~ 176 (284)
T 3smz_A 164 -PRTLYVHWTDAGQ 176 (284)
T ss_dssp -TEECEEEECCGGG
T ss_pred -CcEEEEEECCCCC
Confidence 5599999998754
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=1e-23 Score=164.68 Aligned_cols=146 Identities=18% Similarity=0.221 Sum_probs=114.1
Q ss_pred EEEecCCCCeeEEEEEEcCHHHHHHHHHHh-CCCccCCCCCCeEEEEEeecCCCCCcCCCCCCceecccccccccccccC
Q 023143 66 QLKYTGRGNQVVAFATFVNHQTAVAALHEL-NGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQES 144 (286)
Q Consensus 66 ~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (286)
.+.+++..-+++++|+|.+.++|++|++.+ ||..+. | .+.+.++..........
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~---G-~~~~~~a~~~~~~~~~~--------------------- 58 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVD---G-EWTYDDATKTFTVTEGS--------------------- 58 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCC---C-EEEEETTTTEEEEECSS---------------------
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCC---C-ceecccccCcccccccc---------------------
Confidence 445566666779999999999999999999 999998 8 88888654321110000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCccccCCCCCCCCCCCCccEEEEccCCCCCCHHHHHHHH
Q 023143 145 SSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINEQSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTL 224 (286)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~NL~~~~te~~L~~~F 224 (286)
.... .........+.++|||+|||.++|+++|+++|
T Consensus 59 ~~~~--------------------------------------------~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F 94 (150)
T 2i2y_A 59 HHHH--------------------------------------------HHMHRDSCPLDCKVYVGNLGNNGNKTELERAF 94 (150)
T ss_dssp SSCC--------------------------------------------CCSCSSSSTTSCEEEEESCCSCCSCHHHHHHH
T ss_pred cccc--------------------------------------------ccccccCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 0000 00001112358999999999999999999999
Q ss_pred hcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEeccccC
Q 023143 225 SVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMR 284 (286)
Q Consensus 225 ~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~~~ 284 (286)
++||.|..|++..+ ++|||||+|.+.++|.+|++.|||..+. |+.|+|+||+.+.+
T Consensus 95 ~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~~~~r 150 (150)
T 2i2y_A 95 GYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC---GCRVRVELSNGEKR 150 (150)
T ss_dssp HHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS---SSCCEEEECCCCCC
T ss_pred HhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEcCCCCC
Confidence 99999999999886 5699999999999999999999999998 56999999988753
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=7.2e-23 Score=161.23 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=73.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+.++|||+|||.++++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 145 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GRELRVQ 145 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS---SSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 488999999999999999999999999999999976 457889999999999999999999999998 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=3.1e-23 Score=154.59 Aligned_cols=78 Identities=15% Similarity=0.338 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEee
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~ 114 (286)
+.+|||+|||+++|+++|+++|+.||.|.+|+|..+....++||||+|.+.++|.+|++.|+|..|. |+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~---g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEECC
Confidence 5689999999999999999999999999999998665555679999999999999999999999998 9999999876
Q ss_pred c
Q 023143 115 S 115 (286)
Q Consensus 115 ~ 115 (286)
.
T Consensus 82 ~ 82 (115)
T 4f25_A 82 S 82 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=2.3e-21 Score=140.41 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=72.1
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
..+++|||+|||.++|+++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ---SKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 3588999999999999999999999999999999986 456789999999999999999999999999 559999
Q ss_pred EEecc
Q 023143 277 EYARS 281 (286)
Q Consensus 277 ~~ak~ 281 (286)
+|||.
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99974
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=138.56 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=72.5
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCc--cCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST--LPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~--~~~~~g~~l~V~ 277 (286)
.+|+++|||+|||.++|+++|+++|++||.|.+|++++. ||||||+|++.++|.+|++.|||.. +. |++|+|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~---Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIA---GHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEET---TEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeC---CcEEEEE
Confidence 467999999999999999999999999999999999865 4999999999999999999999987 66 6699999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 93 ~S~~k~ 98 (100)
T 3r27_A 93 YSTSQK 98 (100)
T ss_dssp ECSCSC
T ss_pred eccccc
Confidence 998864
No 26
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=134.06 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=72.0
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCc--cCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST--LPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~--~~~~~g~~l~V~ 277 (286)
.+|+++|||+|||.++++++|+++|++||.|..|.++++ ++||||+|++.++|.+|++.|||.. +. |+.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~---Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIA---GQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSS---SSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEEE
Confidence 457899999999999999999999999999999998875 4999999999999999999997765 66 6699999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
||+.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987653
No 27
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=132.92 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=71.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCc--cCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVK--FDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~--~~~~~g~ 106 (286)
.....++++|||+|||+++|+++|+++|++||.|.+|++. ..++ ||||+|.+.++|.+|++.|+|.. +. |+
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg---~AFVef~~~~~A~~Av~~ln~~~~~i~---Gr 87 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKR---QALVEFEDVLGACNAVNYAADNQIYIA---GH 87 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHHHSCEEET---TE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCC---EEEEEECCHHHHHHHHHHhcCCCceeC---Cc
Confidence 4445679999999999999999999999999999999887 4555 99999999999999999999886 66 99
Q ss_pred eEEEEEeecC
Q 023143 107 VLHIELARSN 116 (286)
Q Consensus 107 ~l~v~~~~~~ 116 (286)
+|+|+|++.+
T Consensus 88 ~i~V~~S~~k 97 (100)
T 3r27_A 88 PAFVNYSTSQ 97 (100)
T ss_dssp EEEEEECSCS
T ss_pred EEEEEecccc
Confidence 9999998754
No 28
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-20 Score=137.38 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++..+..+.++||||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEE
Confidence 6678999999999999999999999999999999998554444559999999999999999999999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
+++..
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98653
No 29
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.6e-20 Score=136.13 Aligned_cols=80 Identities=10% Similarity=0.129 Sum_probs=71.2
Q ss_pred CCCccEEEEccCCCC-CCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCC--ccCCCCCCcEEE
Q 023143 200 VQPCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS--TLPSSDRGGMHI 276 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~--~~~~~~g~~l~V 276 (286)
.+++++|||+|||.+ +++++|+++|++||.|.+|++++. ++||||+|++.++|.+|++.||+. .+. |+.|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQ---GRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEE
Confidence 457999999999998 999999999999999999999865 599999999999999999998654 477 669999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987543
No 30
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=136.67 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=73.2
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
++.++|||+||+.++++++|+++|++||.|.+|+++. ++++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM---GNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 4689999999999999999999999999999999986 456789999999999999999999999999 559999
Q ss_pred EEeccc
Q 023143 277 EYARSK 282 (286)
Q Consensus 277 ~~ak~~ 282 (286)
++|+..
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 999764
No 31
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=132.84 Aligned_cols=79 Identities=22% Similarity=0.353 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
++++|||+|||.++|+++|+++|+.||.|.+|++..+.. ..++||||+|.+.++|.+|++.|||..|. |++|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---gr~l~V~ 94 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ---SKTIKVS 94 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC---CEEEEEE
Confidence 568899999999999999999999999999999985432 23459999999999999999999999998 9999999
Q ss_pred Eeec
Q 023143 112 LARS 115 (286)
Q Consensus 112 ~~~~ 115 (286)
|+++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9864
No 32
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.9e-20 Score=138.43 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=71.8
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec--CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
+++|||+|||.++|+++|+++|++||.|.+|+++.+ .++|||||+|.+.++|.+||+.|||..+. |+.|+|+|++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~---g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEECC
Confidence 678999999999999999999999999999999873 35789999999999999999999999999 5599999998
Q ss_pred ccc
Q 023143 281 SKM 283 (286)
Q Consensus 281 ~~~ 283 (286)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 33
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2e-20 Score=135.67 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=71.7
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCC--CccCCCCCCcEEEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD--STLPSSDRGGMHIEY 278 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng--~~~~~~~g~~l~V~~ 278 (286)
+++++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.|++ ..+. |++|+|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET---TEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CEEEEEEE
Confidence 46899999999999999999999999999999999986 49999999999999999998864 6788 66999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
|+.+..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 987653
No 34
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=134.56 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=70.6
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEee----cCCccEEEEEECCHHHHHHHHHhc-CCCccCCCCCCcEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGGMHI 276 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~l-ng~~~~~~~g~~l~V 276 (286)
+++|||+|||.++|+++|+++|++|| .|.+|++++ +.++|||||+|.+.++|.+|++.+ |+..+. |+.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CEEEEE
Confidence 57899999999999999999999999 799999876 567899999999999999999988 466788 569999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+.+
T Consensus 78 ~~a~~~~~ 85 (91)
T 2lxi_A 78 HYSDPKPK 85 (91)
T ss_dssp ECCCSCCC
T ss_pred EEcCCCCC
Confidence 99987654
No 35
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=134.50 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=71.1
Q ss_pred CCccEEEEccCCC-CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCc--cCCCCCCcEEEE
Q 023143 201 QPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST--LPSSDRGGMHIE 277 (286)
Q Consensus 201 ~~~~~L~v~NL~~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~--~~~~~g~~l~V~ 277 (286)
.++++|||+|||. ++|+++|+++|++||.|.+|++++.+ +||||+|++.++|.+|++.|||.. +. |+.|+|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVF---GKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEET---TEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceEC---CcEEEEE
Confidence 3699999999999 99999999999999999999998765 899999999999999999998765 77 6699999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 999654
No 36
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=131.51 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=72.0
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcC--CCccCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ--DSTLPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ln--g~~~~~~~g~~l~V~ 277 (286)
.+++++|||+|||..+++++|+++|++||.|..|.++++ +|||||+|++.++|.+|++.|+ +..+. |+.|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR---NQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET---TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CcEEEEE
Confidence 457999999999999999999999999999999998876 5999999999999999999874 66788 6699999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
||+.+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9997654
No 37
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=132.74 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=69.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCC--ceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCc----cCCCCC
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPG--FNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDST----LPSSDR 271 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~--v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~----~~~~~g 271 (286)
.-.||||+|||+++|+++|+++|++||. +.+|++++ ++++|||||+|.+.++|.+|++.|||.. +. |
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~---G 84 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID---G 84 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET---T
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC---C
Confidence 4688999999999999999999999995 66888876 5678999999999999999999999974 66 6
Q ss_pred CcEEEEEecc
Q 023143 272 GGMHIEYARS 281 (286)
Q Consensus 272 ~~l~V~~ak~ 281 (286)
+.|.|+|||+
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 6999999997
No 38
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-20 Score=135.34 Aligned_cols=80 Identities=19% Similarity=0.163 Sum_probs=72.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCC--CccCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD--STLPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng--~~~~~~~g~~l~V~ 277 (286)
.+++++|||+|||.++|+++|+++|++||.|.+|+++++ +|||||+|++.++|.+|++.|++ ..+. |+.|+|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~---Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBT---TBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceEC---CeEEEEE
Confidence 456899999999999999999999999999999999987 49999999999999999999985 5787 6699999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
||+.+..
T Consensus 103 ~a~~k~~ 109 (119)
T 2ad9_A 103 FSNHKEL 109 (119)
T ss_dssp ECSSSSC
T ss_pred EccCCCC
Confidence 9987654
No 39
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=2.5e-19 Score=131.10 Aligned_cols=86 Identities=14% Similarity=0.216 Sum_probs=75.5
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec---CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+++++|||+|||.++++++|+++|++||.|..|++..+ .+++||||+|.+.++|.+|++.|||..+.+..++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999999874 34689999999999999999999999998411269999
Q ss_pred EEeccccCC
Q 023143 277 EYARSKMRK 285 (286)
Q Consensus 277 ~~ak~~~~~ 285 (286)
+||+.+.++
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887653
No 40
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=128.98 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=74.6
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
+++++|||+|||..+++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA---GRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS---SSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Confidence 3589999999999999999999999999999999987 446789999999999999999999999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+|++.+..
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99998764
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=129.07 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=72.1
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.+++++|||+|||..+++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF---GRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET---TEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 34689999999999999999999999999999999987 456789999999999999999999999999 55999
Q ss_pred EEEec
Q 023143 276 IEYAR 280 (286)
Q Consensus 276 V~~ak 280 (286)
|+|||
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99996
No 42
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=136.82 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=73.3
Q ss_pred CCCccEEEEccCCCCCCHHHHH----HHHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcE
Q 023143 200 VQPCSTLFIANLGPNCTEDELK----QTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 274 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~----~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l 274 (286)
.+++++|||+|||..+++++|+ ++|++||.|.+|.+.. ++++|||||+|.+.++|.+|++.|||..+. |+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~---gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ---GNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT---TSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC---CCEE
Confidence 3468999999999999999876 6999999999998866 577899999999999999999999999999 5599
Q ss_pred EEEEecccc
Q 023143 275 HIEYARSKM 283 (286)
Q Consensus 275 ~V~~ak~~~ 283 (286)
+|+||+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998764
No 43
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=131.79 Aligned_cols=81 Identities=22% Similarity=0.438 Sum_probs=74.2
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
.+.++|||+|||.++|+++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..|. |+.|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD---GYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET---TEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEc
Confidence 3589999999999999999999999999999999977 445789999999999999999999999998 559999999
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
+.+.+
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 88754
No 44
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=129.82 Aligned_cols=86 Identities=29% Similarity=0.410 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
+...+.++|||+|||.++++++|+++|+.||.|..|++.......++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL---GKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC---CCeEE
Confidence 345678999999999999999999999999999999998654445569999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+|++....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999987543
No 45
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=132.67 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhC--CCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN--GVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~--g~~~~~~~g~~l~v~ 111 (286)
++++|||+|||+++|+++|+++|++||.|.+|+|. ..++ ||||+|.+.++|.+|++.++ +..|. |++|+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG---faFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr~l~V~ 87 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKN---QAFIEMNTEEAANTMVNYYTSVTPVLR---GQPIYIQ 87 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHTTSCCEET---TEECCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCC---EEEEEECCHHHHHHHHHHhccCCceEC---CEEEEEE
Confidence 47899999999999999999999999999999988 3455 99999999999999999886 47887 9999999
Q ss_pred EeecCC
Q 023143 112 LARSNS 117 (286)
Q Consensus 112 ~~~~~~ 117 (286)
|++.+.
T Consensus 88 ~A~~~~ 93 (105)
T 1sjq_A 88 FSNHKE 93 (105)
T ss_dssp CCSSSS
T ss_pred EcCCCC
Confidence 987643
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.1e-19 Score=127.62 Aligned_cols=77 Identities=17% Similarity=0.323 Sum_probs=71.2
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
+++++|||+|||.++++++|+++|++||.|..+++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEE
Confidence 4689999999999999999999999999999999866 345789999999999999999999999998 569999
Q ss_pred EEec
Q 023143 277 EYAR 280 (286)
Q Consensus 277 ~~ak 280 (286)
+|||
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9996
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=128.17 Aligned_cols=79 Identities=14% Similarity=0.203 Sum_probs=70.5
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
+++++|||+|||.++++++|+++|++||.|..+++... .++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 35889999999999999999999999999999999873 35689999999999999999999999999 559999
Q ss_pred EEeccc
Q 023143 277 EYARSK 282 (286)
Q Consensus 277 ~~ak~~ 282 (286)
+||+.+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999876
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.6e-19 Score=128.36 Aligned_cols=86 Identities=21% Similarity=0.322 Sum_probs=76.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
....+.++|||+|||.++++++|+++|+.||.|..|++.....+.++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 345578999999999999999999999999999999998655445669999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+++.....
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999976543
No 49
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=2.2e-19 Score=133.58 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=74.3
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.++.++|||+|||.++++++|+++|++||.|..|+++. +.+++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 34689999999999999999999999999999999987 345679999999999999999999999999 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+|++.+..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999987654
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=130.03 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=74.5
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..+.++|||+|||..+++++|+++|++||.|..|++.. ..+++||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~ 88 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL---GKEVKVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET---TEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC---CCeEEEE
Confidence 34689999999999999999999999999999999987 335689999999999999999999999999 5599999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
|++.+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987653
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=129.05 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=74.8
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
..+.++|||+|||.++++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 90 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK---ENIIKV 90 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS---SCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 34688999999999999999999999999999999988 445689999999999999999999999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+.+
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99998764
No 52
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-18 Score=133.51 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=77.6
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 26 YHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 26 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
....+...+.++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|+|..|.
T Consensus 33 ~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 110 (139)
T 1u6f_A 33 TQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL-- 110 (139)
T ss_dssp SCSSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS--
T ss_pred cccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 334455677899999999999999999999999999999999855332 3559999999999999999999999998
Q ss_pred CCCeEEEEEeecCC
Q 023143 104 SGSVLHIELARSNS 117 (286)
Q Consensus 104 ~g~~l~v~~~~~~~ 117 (286)
|+.|+|++++...
T Consensus 111 -g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 111 -NKRLKVALAASGH 123 (139)
T ss_dssp -SCEEEEEESSCCC
T ss_pred -CeEEEEEECCCCC
Confidence 9999999997654
No 53
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.9e-19 Score=130.02 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=74.7
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||..+++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY---GKPIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS---SCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEE
Confidence 4689999999999999999999999999999999977 346789999999999999999999999999 559999
Q ss_pred EEeccccCC
Q 023143 277 EYARSKMRK 285 (286)
Q Consensus 277 ~~ak~~~~~ 285 (286)
+||+.+.+.
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999887553
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.6e-19 Score=129.97 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=73.0
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
|+++|||+|||..+++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG---SRFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 478999999999999999999999999999999986 345789999999999999999999999999 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 998764
No 55
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=128.30 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
+.+++|||+|||..+++++|+++|++||.|. ++++.+.+++||||+|.+.++|.+|++.|||..+. |+.|+|+||+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG---TDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS---SSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEcC
Confidence 3588999999999999999999999999997 77778888899999999999999999999999999 5599999998
Q ss_pred cccC
Q 023143 281 SKMR 284 (286)
Q Consensus 281 ~~~~ 284 (286)
.+..
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 56
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.2e-19 Score=125.78 Aligned_cols=74 Identities=16% Similarity=0.138 Sum_probs=69.5
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.+..|||+||+..+||++|+++|.+||.|.++++.. ++|||||+|.+.++|.+|++.|||..+. |++|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~---gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLA---NTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEET---TEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEEC---CcEEEEEECC
Confidence 488999999999999999999999999999999876 5699999999999999999999999999 5599999985
No 57
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.7e-19 Score=128.70 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=74.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec--CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..+.++|||+|||.++++++|+++|++||.|..|+++.+ .+++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 88 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIEVN 88 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEEE
Confidence 345899999999999999999999999999999999873 35789999999999999999999999999 5599999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
|++.+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cq3_A 89 NATARVM 95 (103)
T ss_dssp ECCSSCC
T ss_pred EcccCCC
Confidence 9988754
No 58
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=2.1e-19 Score=129.58 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=70.7
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 29 QQQDNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
.....++++|||+|||. ++++++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g---~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 86 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NA---FGFIQFDNPQSVRDAIEXESQEMNF---GKK 86 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SS---EEEEEESSHHHHHHHHHHHTTSEET---TEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CC---EEEEEECCHHHHHHHHHHcCCCEEC---CEE
Confidence 34455789999999998 99999999999999999999885 55 9999999999999999999999998 999
Q ss_pred EEEEEeecC
Q 023143 108 LHIELARSN 116 (286)
Q Consensus 108 l~v~~~~~~ 116 (286)
|+|++++.+
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998754
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=129.89 Aligned_cols=81 Identities=16% Similarity=0.268 Sum_probs=74.5
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec--CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.++++|||+|||.++|+++|+++|++||.|..|++... .+++||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA---TKPLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEEE
Confidence 36899999999999999999999999999999999874 56789999999999999999999999998 55999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
|+.+..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987754
No 60
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.8e-19 Score=132.53 Aligned_cols=82 Identities=24% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC
Q 023143 26 YHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (286)
Q Consensus 26 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (286)
........++++|||+|||.++++++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg---~afV~f~~~~~A~~Ai~~l~g~~~~---g 92 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NG---FAFVEFEEAESAAKAIEEVHGKSFA---N 92 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TT---EEEEECSSHHHHHHHHHHHTTCEET---T
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CC---EEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 4445557788999999999999999999999999999999988 55 9999999999999999999999998 9
Q ss_pred CeEEEEEeecC
Q 023143 106 SVLHIELARSN 116 (286)
Q Consensus 106 ~~l~v~~~~~~ 116 (286)
+.|+|+|++..
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99999998764
No 61
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=5.5e-19 Score=132.03 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=71.4
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.+++++|||+|||.++++++|+++|++||.|..|+++. +.++|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 113 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG---TKRLK 113 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET---TEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 44689999999999999999999999999999999976 456789999999999999999999999999 55999
Q ss_pred EEEec
Q 023143 276 IEYAR 280 (286)
Q Consensus 276 V~~ak 280 (286)
|+|+|
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99986
No 62
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=128.37 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=74.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||.++++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ---GRMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS---SCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEE
Confidence 3589999999999999999999999999999999976 446789999999999999999999999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+|++.+..
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99988754
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=9.2e-19 Score=127.58 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
....+.++|||+|||.++|+++|+++|+.||.|..|++.......++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA---TKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---CcEEE
Confidence 345578999999999999999999999999999999998653334559999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023143 110 IELARSNSRK 119 (286)
Q Consensus 110 v~~~~~~~~~ 119 (286)
|+|++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999865443
No 64
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2.4e-19 Score=125.38 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=71.5
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+.+|||+|||.++++++|+++|++||.|..++++. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEEEEEe
Confidence 36899999999999999999999999999999986 344789999999999999999999999998 56999999
Q ss_pred ecccc
Q 023143 279 ARSKM 283 (286)
Q Consensus 279 ak~~~ 283 (286)
|+.+.
T Consensus 78 a~~~~ 82 (83)
T 3md1_A 78 AAKLE 82 (83)
T ss_dssp CCCCC
T ss_pred cCcCC
Confidence 99764
No 65
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=132.89 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=73.9
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..++++|||+|||.++++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEE
Confidence 44689999999999999999999999999999999987 345789999999999999999999999999 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 66
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=128.73 Aligned_cols=79 Identities=24% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.+++++|||+|||..+++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---GRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 34689999999999999999999999999999999986 345679999999999999999999999999 55999
Q ss_pred EEEecc
Q 023143 276 IEYARS 281 (286)
Q Consensus 276 V~~ak~ 281 (286)
|+||++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999985
No 67
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=127.29 Aligned_cols=82 Identities=17% Similarity=0.369 Sum_probs=74.1
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
.+++++|||+|||.++++++|+++|++||.|..|++..+ ++||||+|.+.++|.+|++.|||..+.+. |+.|+|+||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~-g~~l~V~~a 90 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGP-DRRLRVDFA 90 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSS-SCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCC-CcEEEEEEC
Confidence 346899999999999999999999999999999999876 48999999999999999999999999832 449999999
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
+.+..
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98754
No 68
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=130.96 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCC--ccCCCCCCeE
Q 023143 32 DNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGV--KFDPQSGSVL 108 (286)
Q Consensus 32 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~--~~~~~~g~~l 108 (286)
.+++++|||+|||+ ++|+++|+++|++||.|.+|.|. ..++ ||||+|.+.++|.+|++.|++. .|. |++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKIN---EAFIEMATTEDAQAAVDYYTTTPALVF---GKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSS---CEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCC---EEEEEECCHHHHHHHHHHHcCCCceEC---CcEE
Confidence 45789999999999 99999999999999999999887 4444 9999999999999999998865 477 9999
Q ss_pred EEEEeecCCC
Q 023143 109 HIELARSNSR 118 (286)
Q Consensus 109 ~v~~~~~~~~ 118 (286)
+|+|++....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999986543
No 69
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=131.64 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCC--CccCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG--VKFDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g--~~~~~~~g~ 106 (286)
.....++++|||+|||+++|+++|+++|++||.|.+|+|. ..++ ||||+|.+.++|.+|++.+++ ..|. |+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG---~AFVeF~~~e~A~~Ai~~l~~~~~~l~---Gr 97 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKN---QAFIEMNTEEAANTMVNYYTSVTPVLR---GQ 97 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGT---EEEEECSCHHHHHHHHHHHHHHCCCBT---TB
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhccCCceEC---Ce
Confidence 4446678999999999999999999999999999999988 3345 999999999999999998874 6787 99
Q ss_pred eEEEEEeecCC
Q 023143 107 VLHIELARSNS 117 (286)
Q Consensus 107 ~l~v~~~~~~~ 117 (286)
+|+|+|++...
T Consensus 98 ~l~V~~a~~k~ 108 (119)
T 2ad9_A 98 PIYIQFSNHKE 108 (119)
T ss_dssp CCEEEECSSSS
T ss_pred EEEEEEccCCC
Confidence 99999997643
No 70
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=128.90 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=74.4
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.++.++|||+|||.++++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD---GRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT---SCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 34689999999999999999999999999999999987 346789999999999999999999999998 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+||+.+..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999987653
No 71
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=129.87 Aligned_cols=82 Identities=17% Similarity=0.290 Sum_probs=74.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..++++|||+|||..+++++|+++|++||.|..|++... .+++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD---HLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 346899999999999999999999999999999999873 45679999999999999999999999999 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+|++.+..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987754
No 72
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=135.06 Aligned_cols=86 Identities=14% Similarity=0.257 Sum_probs=74.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
.+...++++|||+|||+.+++++|+ ++|+.||.|.+|.+..+ ...++||||+|.+.++|.+|++.|||..|.
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--- 98 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQ--- 98 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCT---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeC---
Confidence 3456678999999999999999876 79999999998887632 233559999999999999999999999998
Q ss_pred CCeEEEEEeecCCC
Q 023143 105 GSVLHIELARSNSR 118 (286)
Q Consensus 105 g~~l~v~~~~~~~~ 118 (286)
|++|+|+|++....
T Consensus 99 gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 99 GNPLVITFSETPQS 112 (127)
T ss_dssp TSCCEEEECCCCCH
T ss_pred CCEEEEEEccCcch
Confidence 99999999986543
No 73
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=8.4e-19 Score=127.75 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=70.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCc--cCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVK--FDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~--~~~~~g~~ 107 (286)
....++++|||+|||+++++++|+++|++||.|..|.+. ..++ ||||+|.+.++|.+|++.|++.. +. |++
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~i~---Gr~ 82 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKR---QALVEFENIDSAKECVTFAADVPVYIA---GQQ 82 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHHHSCCBSS---SSB
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCC---EEEEEECCHHHHHHHHHHhccCCceEC---CEE
Confidence 345578999999999999999999999999999999887 4455 99999999999999999887654 76 999
Q ss_pred EEEEEeecCC
Q 023143 108 LHIELARSNS 117 (286)
Q Consensus 108 l~v~~~~~~~ 117 (286)
|+|+|++.+.
T Consensus 83 l~V~~a~~~~ 92 (104)
T 1wex_A 83 AFFNYSTSKR 92 (104)
T ss_dssp CEEEECSSSS
T ss_pred EEEEEccCcc
Confidence 9999997643
No 74
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=127.95 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=73.7
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
.+++++|||+|||..+++++|+++|++||.|..|++.+. ++||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLR---GKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBT---TBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeC---CceEEEEEc
Confidence 456899999999999999999999999999999999866 499999999999999999999999999 569999999
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
+.+..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88653
No 75
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-19 Score=126.88 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=71.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh--CCCccCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL--NGVKFDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l--~g~~~~~~~g~ 106 (286)
.....++++|||+|||+++++++|+++|++||.|..|.+. ..++ ||||+|.+.++|.+|++.| ++..+. |+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr 81 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKN---QAFLELATEEAAITMVNYYSAVTPHLR---NQ 81 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHHHSCCEET---TE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCC---EEEEEECCHHHHHHHHHHhccCCceEC---Cc
Confidence 3445678999999999999999999999999999999877 4455 9999999999999999977 467787 99
Q ss_pred eEEEEEeecCC
Q 023143 107 VLHIELARSNS 117 (286)
Q Consensus 107 ~l~v~~~~~~~ 117 (286)
+|+|+|++...
T Consensus 82 ~l~V~~a~~~~ 92 (101)
T 2cq1_A 82 PIYIQYSNHKE 92 (101)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCccc
Confidence 99999997643
No 76
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=6e-19 Score=131.22 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=74.3
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..+.++|||+|||..+++++|+++|++||.|..|+++.. .+++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 88 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQIR 88 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 346899999999999999999999999999999999873 34679999999999999999999999999 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+||+.+..
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 77
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=125.62 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=72.7
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC-----CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~-----~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+++|||+|||.++++++|+++|++||.|..+++.... ++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID---GQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC---CeEEEE
Confidence 47899999999999999999999999999999997743 6789999999999999999999999999 559999
Q ss_pred EEecccc
Q 023143 277 EYARSKM 283 (286)
Q Consensus 277 ~~ak~~~ 283 (286)
++++.+.
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9998764
No 78
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=130.10 Aligned_cols=81 Identities=16% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||..+++++|+++|++||.|..|+++. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 86 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIRV 86 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET---TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEE
Confidence 4689999999999999999999999999999999976 456789999999999999999999999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+|++.+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2cqb_A 87 NLAKPMRI 94 (102)
T ss_dssp EECCCCCC
T ss_pred EeCCCCCC
Confidence 99988754
No 79
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.4e-19 Score=126.85 Aligned_cols=80 Identities=15% Similarity=0.270 Sum_probs=73.1
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+.++|||+|||..+++++|+++|++||.|..|+++. +.+++||||+|.+.++|.+|++ |||..+. |+.|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM---GKKVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS---SCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC---CeEEEE
Confidence 4689999999999999999999999999999999986 4467899999999999999998 9999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+|++.+..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987654
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=127.22 Aligned_cols=85 Identities=21% Similarity=0.326 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
.+...+.++|||+|||..+++++|+++|+.||.|..|++...... .++||||+|.+.++|.+|++.|+|..+. |+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~---g~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA---GR 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS---SS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CE
Confidence 444667899999999999999999999999999999999855332 3459999999999999999999999998 99
Q ss_pred eEEEEEeecC
Q 023143 107 VLHIELARSN 116 (286)
Q Consensus 107 ~l~v~~~~~~ 116 (286)
.|+|++++..
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999998754
No 81
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.79 E-value=5e-19 Score=127.55 Aligned_cols=78 Identities=22% Similarity=0.282 Sum_probs=71.6
Q ss_pred CCCccEEEEccCCC-CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 200 VQPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 200 ~~~~~~L~v~NL~~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.+++++|||+|||. ++++++|+++|++||.|..+++. +|||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF---GKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET---TEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEe
Confidence 45699999999998 99999999999999999999984 589999999999999999999999999 55999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
++.+.|
T Consensus 92 a~~~~r 97 (97)
T 2xnq_A 92 SSSNAR 97 (97)
T ss_dssp CCCCC-
T ss_pred cCCCCC
Confidence 998753
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=129.47 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=74.1
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||.++++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD---GRELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT---TBCCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEE
Confidence 3589999999999999999999999999999999986 446789999999999999999999999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987643
No 83
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=127.31 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=71.3
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceE--------EEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--------LKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~--------v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
.++.++|||+|||.++++++|+++|++||.|.. +++..+ +++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346899999999999999999999999999999 888763 45789999999999999999999999999
Q ss_pred CCCCCcEEEEEec
Q 023143 268 SSDRGGMHIEYAR 280 (286)
Q Consensus 268 ~~~g~~l~V~~ak 280 (286)
|+.|+|+||+
T Consensus 90 ---g~~l~V~~A~ 99 (99)
T 2la6_A 90 ---GNPIKVSFAT 99 (99)
T ss_dssp ---SSBCEEEECC
T ss_pred ---CcEEEEEecC
Confidence 5599999985
No 84
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=124.46 Aligned_cols=75 Identities=20% Similarity=0.394 Sum_probs=70.3
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhc-CCCccCCCCCCcEEEEEe
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~l-ng~~~~~~~g~~l~V~~a 279 (286)
+++++|||+|||.++++++|+++|++||.|..+++...+ +||||+|.+.++|.+|++.| ||..+. |+.|+|+||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k--g~afV~f~~~~~A~~a~~~l~~~~~~~---g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ--QCAFIQFATRQAAEVAAEKSFNKLIVN---GRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHTTTTTCEET---TEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC--CEEEEEECCHHHHHHHHHHhcCCeeEC---CCEEEEEec
Confidence 458999999999999999999999999999999999864 89999999999999999999 999999 559999998
Q ss_pred c
Q 023143 280 R 280 (286)
Q Consensus 280 k 280 (286)
|
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 85
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=7.1e-19 Score=124.97 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=71.7
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.+.++|||+|||.++++++|+++|++||.|..|++. ++||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH---GVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS---SCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC---CcEEEEEECC
Confidence 468999999999999999999999999999999998 489999999999999999999999999 5599999998
Q ss_pred cccC
Q 023143 281 SKMR 284 (286)
Q Consensus 281 ~~~~ 284 (286)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 86
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=7.4e-19 Score=125.32 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++.......++||||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS---GREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT---TBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEE
Confidence 4568999999999999999999999999999999998643334569999999999999999999999998 9999999
Q ss_pred EeecCC
Q 023143 112 LARSNS 117 (286)
Q Consensus 112 ~~~~~~ 117 (286)
+++...
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 987654
No 87
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=127.56 Aligned_cols=83 Identities=18% Similarity=0.365 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC-----CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-----GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-----~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
.++++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|+|..|. |+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD---GHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC---CeE
Confidence 4689999999999999999999999999999999885432 23459999999999999999999999998 999
Q ss_pred EEEEEeecCCC
Q 023143 108 LHIELARSNSR 118 (286)
Q Consensus 108 l~v~~~~~~~~ 118 (286)
|+|++++....
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999876543
No 88
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=128.13 Aligned_cols=81 Identities=19% Similarity=0.347 Sum_probs=73.8
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec-----CCccEEEEEECCHHHHHHHHHhc-CCCccCCCCCCc
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGG 273 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~Al~~l-ng~~~~~~~g~~ 273 (286)
.+++++|||+|||..+++++|+++|++||.|..|++... .+++||||+|.+.++|.+|++.| ||..+. |+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---GRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS---SCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC---CCE
Confidence 346899999999999999999999999999999999764 35789999999999999999999 999999 559
Q ss_pred EEEEEecccc
Q 023143 274 MHIEYARSKM 283 (286)
Q Consensus 274 l~V~~ak~~~ 283 (286)
|+|+||+.+.
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998764
No 89
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=130.56 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=73.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+.++|||+|||.++++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~V~~ 82 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH---GKAIKVEQ 82 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS---SSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEEEE
Confidence 578999999999999999999999999999999987 456789999999999999999999999999 55999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
|+.+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987653
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=128.64 Aligned_cols=85 Identities=27% Similarity=0.452 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
+...+.++|||+|||.++++++|+++|+.||.|..|++.... ..++||||+|.+.++|.+|++.||+..|. |+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYD---GYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 345678999999999999999999999999999999987433 34569999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+|++....
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999876543
No 91
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=128.23 Aligned_cols=80 Identities=25% Similarity=0.329 Sum_probs=73.2
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEE-EEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNML-KMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v-~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
++++|||+|||.++++++|+++|++||.|..+ ++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET---TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEE
Confidence 58999999999999999999999999999999 8876 446789999999999999999999999998 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+..
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99987654
No 92
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=129.26 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec-------CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
+++++|||+|||.++++++|+++|++||.|..|++... .+++||||+|.+.++|.+|++.|||..+. |+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD---GHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC---CeE
Confidence 35899999999999999999999999999999999862 45689999999999999999999999999 559
Q ss_pred EEEEEeccccC
Q 023143 274 MHIEYARSKMR 284 (286)
Q Consensus 274 l~V~~ak~~~~ 284 (286)
|+|+|++.+..
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 93
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=8.8e-19 Score=130.29 Aligned_cols=81 Identities=23% Similarity=0.294 Sum_probs=74.2
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCc----eEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGF----NMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v----~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
+++++|||+|||.++|+++|+++|++||.| ..+++..+.++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY---GKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS---SCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEE
Confidence 468999999999999999999999999998 6777777888899999999999999999999999998 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 99988754
No 94
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=2.2e-19 Score=132.20 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=72.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCC-CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.+.+|||+|||.++++++|+++|++|| .|..+.+....++|||||+|.+.++|.+||+.|||..+. |+.|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~---Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR---GSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET---TEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEECC
Confidence 478999999999999999999999999 999999976678899999999999999999999999999 5599999998
Q ss_pred ccc
Q 023143 281 SKM 283 (286)
Q Consensus 281 ~~~ 283 (286)
.+.
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 95
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.3e-18 Score=127.57 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec---CCCCeeEEEEEEcCHHHHHHHHHHh-CCCccCCCCC
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT---GRGNQVVAFATFVNHQTAVAALHEL-NGVKFDPQSG 105 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~~~~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g 105 (286)
+...+.++|||+|||..+++++|+++|+.||.|..|++... ....++||||+|.+.++|.+|++.| +|..|. |
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---g 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---G 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS---S
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC---C
Confidence 34567899999999999999999999999999999998744 2223449999999999999999999 999998 9
Q ss_pred CeEEEEEeecCCC
Q 023143 106 SVLHIELARSNSR 118 (286)
Q Consensus 106 ~~l~v~~~~~~~~ 118 (286)
+.|+|+|++....
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999987544
No 96
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=123.59 Aligned_cols=79 Identities=23% Similarity=0.467 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...+.++|||+|||.++++++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 74 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KN---YGFVHIEDKTAAEDAIRNLHHYKLH---GVNINV 74 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TT---EEEEEESSHHHHHHHHHHHTTCBCS---SCBCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CC---EEEEEECCHHHHHHHHHHhcCCccC---CcEEEE
Confidence 34568999999999999999999999999999999988 55 9999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023143 111 ELARSNSR 118 (286)
Q Consensus 111 ~~~~~~~~ 118 (286)
++++....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 97
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=7.1e-19 Score=128.85 Aligned_cols=85 Identities=21% Similarity=0.206 Sum_probs=74.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.++.++|||+|||.++++++|+++|++||.|..|+++. +.+++||||+|.+.++|.+|++.|||..+...+|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34689999999999999999999999999999999987 45678999999999999999999999987211267999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+||+.+.+
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987654
No 98
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=130.31 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=73.3
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
+++++|||+|||..+++++|+++|++||.|..|++... .++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l~V 100 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA---GRPMKV 100 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS---SSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEE
Confidence 45899999999999999999999999999999999863 45689999999999999999999999999 559999
Q ss_pred EEecccc
Q 023143 277 EYARSKM 283 (286)
Q Consensus 277 ~~ak~~~ 283 (286)
+|++.+-
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998763
No 99
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=125.27 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccE--------EEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDF--------CQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
+.++|||+|||.++++++|+++|+.||.|.. |++..+.. ..++||||+|.+.++|.+|++.|+|..+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~-- 89 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS-- 89 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC--
Confidence 4789999999999999999999999999998 88875432 23559999999999999999999999998
Q ss_pred CCCeEEEEEee
Q 023143 104 SGSVLHIELAR 114 (286)
Q Consensus 104 ~g~~l~v~~~~ 114 (286)
|+.|+|++++
T Consensus 90 -g~~l~V~~A~ 99 (99)
T 2la6_A 90 -GNPIKVSFAT 99 (99)
T ss_dssp -SSBCEEEECC
T ss_pred -CcEEEEEecC
Confidence 9999999874
No 100
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=3.3e-19 Score=131.06 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=72.1
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
..++++|||+|||.++++++|+++|++||.|..|++. +|||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA---NQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEe
Confidence 4468999999999999999999999999999999998 589999999999999999999999998 569999999
Q ss_pred ccccCC
Q 023143 280 RSKMRK 285 (286)
Q Consensus 280 k~~~~~ 285 (286)
+.+..+
T Consensus 101 ~~~~~r 106 (108)
T 2jvo_A 101 KLPAKR 106 (108)
T ss_dssp SCCC--
T ss_pred cCCCCC
Confidence 887643
No 101
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=128.82 Aligned_cols=81 Identities=16% Similarity=0.276 Sum_probs=73.8
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||..+++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS---SSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC---CcEEEE
Confidence 3589999999999999999999999999999999987 344789999999999999999999999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+..
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99987653
No 102
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=9.8e-19 Score=128.89 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+.++|||+|||+++++++|+++|++||.|.+|+|..+.. ..++||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---gr~i~V~ 81 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM---GNIIHAQ 81 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 478999999999999999999999999999999986543 23569999999999999999999999998 9999999
Q ss_pred Eeec
Q 023143 112 LARS 115 (286)
Q Consensus 112 ~~~~ 115 (286)
++..
T Consensus 82 ~a~~ 85 (110)
T 3s8s_A 82 LDIK 85 (110)
T ss_dssp ECST
T ss_pred ECCC
Confidence 9864
No 103
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=6e-19 Score=125.80 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=73.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+++++|||+|||.++++++|+++|++||.|..+++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS---GREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT---TBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEE
Confidence 3589999999999999999999999999999999987 445789999999999999999999999999 55999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
++.+..
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987643
No 104
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=127.55 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec---CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
++.++|||+|||..+++++|+++|++||.|..|++... .+++||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~ 90 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY---GRPINVS 90 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CCEEEEE
Confidence 35899999999999999999999999999999999873 45679999999999999999999999999 5599999
Q ss_pred Eecc
Q 023143 278 YARS 281 (286)
Q Consensus 278 ~ak~ 281 (286)
||++
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9975
No 105
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.5e-19 Score=137.12 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=72.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
++++|||+|||.++|+++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l~V~ 122 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GRELRVQ 122 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS---SSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEE
Confidence 478899999999999999999999999999999975 456789999999999999999999999999 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
|++.+.
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998754
No 106
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=126.50 Aligned_cols=80 Identities=11% Similarity=0.131 Sum_probs=72.8
Q ss_pred CccEEEEccCCCCCCHHHHH----HHHhcCCCceEEEEeecC-CccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 202 PCSTLFIANLGPNCTEDELK----QTLSVYPGFNMLKMRARG-GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~----~~F~~~G~v~~v~~~~~~-~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+++|||+|||..+++++|+ ++|++||.|.+|++..+. +++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~---gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG---SKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET---TEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 47899999999999999999 999999999999998632 2789999999999999999999999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+..
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987654
No 107
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=9.1e-19 Score=136.56 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=73.0
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEeccc
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 282 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~ 282 (286)
..+|||+||+..+|+++|+++|++||.|.+|++..+.+++||||+|.+.++|.+|++.|||..|.+. ++.|+|+|||.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-CcEEEEEEecCC
Confidence 4668899999999999999999999999999998776678999999999999999999999999743 579999999976
Q ss_pred c
Q 023143 283 M 283 (286)
Q Consensus 283 ~ 283 (286)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 108
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=5.5e-19 Score=134.06 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=74.3
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.+++++|||+|||.++++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~---g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---GRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS---SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 34689999999999999999999999999999999986 467889999999999999999999999999 55999
Q ss_pred EEEecccc
Q 023143 276 IEYARSKM 283 (286)
Q Consensus 276 V~~ak~~~ 283 (286)
|+|++.+.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 109
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-18 Score=130.66 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..+.++|||+|||.++++++|+++|+.||.|..|+++.+ .++|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL---NKRLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS---SCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 345899999999999999999999999999999999874 34789999999999999999999999999 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+||+.+.+
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999998754
No 110
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.78 E-value=2.5e-18 Score=127.82 Aligned_cols=86 Identities=19% Similarity=0.308 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
....+.++|||+|||.++++++|+++|+.||.|..|+|..... ..++||||+|.+.++|.+|++.|||..|. |+.
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 96 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKR 96 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC---CEE
Confidence 3455779999999999999999999999999999999985532 23459999999999999999999999998 999
Q ss_pred EEEEEeecCCC
Q 023143 108 LHIELARSNSR 118 (286)
Q Consensus 108 l~v~~~~~~~~ 118 (286)
|+|+|++....
T Consensus 97 l~V~~a~~~~~ 107 (115)
T 2cpz_A 97 LKVQLKRSKND 107 (115)
T ss_dssp CEEECCCCSCC
T ss_pred EEEEEcCCCCc
Confidence 99999976544
No 111
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.2e-19 Score=128.95 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
....+++|||+|||.++++++|+++|+.||.|..|++. ..++ ||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V 95 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKG---CCFIKYDTHEQAAVCIVALANFPFQ---GRNLRT 95 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTT---EEEEECSSHHHHHHHHHHHTTCEET---TEECCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCC---EEEEEECCHHHHHHHHHHhCCCeEC---CeEEEE
Confidence 34457899999999999999999999999999999988 4455 9999999999999999999999998 999999
Q ss_pred EEeec
Q 023143 111 ELARS 115 (286)
Q Consensus 111 ~~~~~ 115 (286)
.|++.
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 98864
No 112
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.6e-19 Score=129.30 Aligned_cols=76 Identities=16% Similarity=0.250 Sum_probs=71.0
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
.+++|||+|||.++++++|+++|++||.|.++++.. +++||||+|.+.++|.+|++.|||..+. |+.|+|+||+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQ---GRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEET---TEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEeccC
Confidence 478999999999999999999999999999999984 4599999999999999999999999999 55999999987
Q ss_pred c
Q 023143 282 K 282 (286)
Q Consensus 282 ~ 282 (286)
+
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 113
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=129.04 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCC--CccCCCCCCeE
Q 023143 32 DNGINTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG--VKFDPQSGSVL 108 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g--~~~~~~~g~~l 108 (286)
..++++|||+|||++ +++++|+++|++||.|.+|+|. ..++ ||||+|.+.++|.+|++.|++ ..|. |++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~l~---Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKS---QAFIEMETREDAMAMVDHCLKKALWFQ---GRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTT---EEEEECSSHHHHHHHHHHHHHSCCCSS---SSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCC---EEEEEECCHHHHHHHHHHhccCCceEC---CEEE
Confidence 557899999999998 9999999999999999999987 4455 999999999999999998864 5577 9999
Q ss_pred EEEEeecCCCC
Q 023143 109 HIELARSNSRK 119 (286)
Q Consensus 109 ~v~~~~~~~~~ 119 (286)
+|+|++.....
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999765444
No 114
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=7e-19 Score=129.78 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=74.1
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||..+++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V 100 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQTIQV 100 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEE
Confidence 3589999999999999999999999999999999976 445789999999999999999999999998 569999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+||+.+..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987754
No 115
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=1e-18 Score=125.72 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=70.7
Q ss_pred CCCccEEEEccCCC-CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 200 VQPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 200 ~~~~~~L~v~NL~~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.+++++|||+|||. .+++++|+++|++||.|..|++. ++||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF---GKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB---TTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC---CcEEEEEE
Confidence 45799999999998 99999999999999999999985 589999999999999999999999999 55999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
++.+.+
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987643
No 116
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.6e-19 Score=129.80 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=71.7
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
.+++|||+|||..+++++|+++|++||.|..|.+... ++||||+|.+.++|.+|++.|||..+. |+.|+|+||+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG--GITAIVEFLEPLEARKAFRHLAYSKFH---HVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS--SSCEEEEESCHHHHHHHHHHHTTCBSS---SSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCEEC---CeEEEEEECCC
Confidence 4789999999999999999999999999999998864 489999999999999999999999999 55999999987
Q ss_pred ccC
Q 023143 282 KMR 284 (286)
Q Consensus 282 ~~~ 284 (286)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 643
No 117
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1.2e-18 Score=122.24 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++..+... .++||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC---CcEEE
Confidence 346899999999999999999999999999999988754222 2339999999999999999999999998 99999
Q ss_pred EEEee
Q 023143 110 IELAR 114 (286)
Q Consensus 110 v~~~~ 114 (286)
|+|++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99974
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-18 Score=122.78 Aligned_cols=79 Identities=22% Similarity=0.388 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...+.++|||+|||.++++++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KD---YAFVHMERAEDAVEAIRGLDNTEFQ---GKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SS---EEEEEESCHHHHHHHHHHHTTEEET---TEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CC---EEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Confidence 35578999999999999999999999999999999888 55 9999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023143 111 ELARSNSR 118 (286)
Q Consensus 111 ~~~~~~~~ 118 (286)
++++....
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99976543
No 119
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=3.4e-19 Score=128.37 Aligned_cols=81 Identities=27% Similarity=0.353 Sum_probs=73.5
Q ss_pred CCCccEEEEccCCCCCCHHHHH----HHHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcE
Q 023143 200 VQPCSTLFIANLGPNCTEDELK----QTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 274 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~----~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l 274 (286)
.+++++|||+|||.++++++|+ ++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY---DKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---CcEE
Confidence 3469999999999999999999 9999999999999875 455689999999999999999999999998 5699
Q ss_pred EEEEecccc
Q 023143 275 HIEYARSKM 283 (286)
Q Consensus 275 ~V~~ak~~~ 283 (286)
+|+||+.+.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998764
No 120
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=127.71 Aligned_cols=81 Identities=20% Similarity=0.291 Sum_probs=73.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcC------CCccCCCC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQ------DSTLPSSD 270 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~ln------g~~~~~~~ 270 (286)
.++++|||+|||.++++++|+++|++||.|..|+++. +.+++||||+|.+.++|.+|++.|| |..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~--- 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD--- 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS---
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc---
Confidence 4689999999999999999999999999999999986 3567899999999999999999999 99998
Q ss_pred CCcEEEEEeccccC
Q 023143 271 RGGMHIEYARSKMR 284 (286)
Q Consensus 271 g~~l~V~~ak~~~~ 284 (286)
|+.|+|+|++.+..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 55999999987643
No 121
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=122.68 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.+.++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 357899999999999999999999999999999998542 223559999999999999999999999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
+|++.+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 998753
No 122
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=2.7e-19 Score=129.72 Aligned_cols=78 Identities=6% Similarity=0.039 Sum_probs=71.8
Q ss_pred CccEEEEccCCC------CCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 202 PCSTLFIANLGP------NCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 202 ~~~~L~v~NL~~------~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
.+++|||+|||. ++++++|+++|++||.|.+|+++. ++++|||||+|.+.++|.+|++.|||..+. |
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD---L 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS---S
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC---C
Confidence 378999999999 999999999999999999999986 446789999999999999999999999999 5
Q ss_pred -CcEEEEEeccc
Q 023143 272 -GGMHIEYARSK 282 (286)
Q Consensus 272 -~~l~V~~ak~~ 282 (286)
+.|+|++|+.+
T Consensus 82 ~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 KHRLFLYTMKDV 93 (100)
T ss_dssp SCBCEEEESHHH
T ss_pred CeEEEEEECchh
Confidence 59999999764
No 123
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=127.82 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEeec
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~~~ 115 (286)
++|||+|||.++|+++|+++|+.||.|..|++....+ +||||+|.+.++|.+|++.|+|..+. |+.|+|++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~---g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP---GFAFVEFEDPRDAEDAVRGLDGKVIC---GSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSS---SEEEEECSSHHHHHHHHHHHHHSCSS---SCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC---CEEEEEECCHHHHHHHHHHHCCCeEC---CcEEEEEEccC
Confidence 4799999999999999999999999999999884433 49999999999999999999999998 99999999876
Q ss_pred CC
Q 023143 116 NS 117 (286)
Q Consensus 116 ~~ 117 (286)
..
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 124
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=123.88 Aligned_cols=86 Identities=23% Similarity=0.347 Sum_probs=75.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
....++++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..|. |+.
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 79 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ---GRM 79 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS---SCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC---CcE
Confidence 345678999999999999999999999999999999887442 122349999999999999999999999998 999
Q ss_pred EEEEEeecCCC
Q 023143 108 LHIELARSNSR 118 (286)
Q Consensus 108 l~v~~~~~~~~ 118 (286)
|+|++++....
T Consensus 80 l~V~~a~~~~~ 90 (99)
T 1whw_A 80 LHVLPSTIKKE 90 (99)
T ss_dssp EEEEECCCCST
T ss_pred EEEEEcCCCcc
Confidence 99999987543
No 125
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=127.87 Aligned_cols=81 Identities=20% Similarity=0.177 Sum_probs=73.1
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec---CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+++++|||+|||..+++++|+++|++||.|..|++... .+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 88 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF---DRPMHV 88 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC---CCEEEE
Confidence 346899999999999999999999999999999999873 34679999999999999999999999998 559999
Q ss_pred EEecccc
Q 023143 277 EYARSKM 283 (286)
Q Consensus 277 ~~ak~~~ 283 (286)
+|++...
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9997543
No 126
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=124.56 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=71.0
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcC--CCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVY--PGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~--G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.+++++|||+|||..+++++|+++|++| |.|..|++. ++||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLD---GSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEET---TEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 4468999999999999999999999999 899988765 479999999999999999999999998 5599999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
||+.+.+
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9988754
No 127
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-18 Score=122.31 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.++++|||+|||.++++++|+++|+.||.|..|++..+.. ..++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA---GRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS---SSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Confidence 3578999999999999999999999999999999985422 22449999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023143 111 ELARSNSR 118 (286)
Q Consensus 111 ~~~~~~~~ 118 (286)
+++.....
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99976543
No 128
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.77 E-value=1.5e-18 Score=127.39 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=71.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.++++|||+|||..+++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD---GRPMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 4689999999999999999999999999999999987 355679999999999999999999999998 5599999
Q ss_pred Eecc
Q 023143 278 YARS 281 (286)
Q Consensus 278 ~ak~ 281 (286)
||.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9864
No 129
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=125.95 Aligned_cols=80 Identities=15% Similarity=0.287 Sum_probs=72.5
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCce-EEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc--
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFN-MLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG-- 273 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~-~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~-- 273 (286)
.++++|||+|||.++++++|+++|++||.|. .|+++.. .+++||||+|.+.++|.+|++.|||..+.+ +.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~~~ 83 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG---ATPA 83 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS---CSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC---CCcc
Confidence 3589999999999999999999999999999 9999873 456899999999999999999999999994 47
Q ss_pred --EEEEEecccc
Q 023143 274 --MHIEYARSKM 283 (286)
Q Consensus 274 --l~V~~ak~~~ 283 (286)
|+|+||+...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999998653
No 130
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=124.87 Aligned_cols=86 Identities=22% Similarity=0.326 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...+.++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 84 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD---GRQI 84 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT---SCCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 355789999999999999999999999999999999984321 13449999999999999999999999998 9999
Q ss_pred EEEEeecCCCC
Q 023143 109 HIELARSNSRK 119 (286)
Q Consensus 109 ~v~~~~~~~~~ 119 (286)
+|++++.....
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 131
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.2e-18 Score=123.45 Aligned_cols=79 Identities=14% Similarity=0.255 Sum_probs=72.6
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.++|||+|||.++++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|+ .|||..+. |+.|+|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~---g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR---GRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET---TEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC---CcEEEEEE
Confidence 68999999999999999999999999999999986 345789999999999999999 99999999 55999999
Q ss_pred eccccCC
Q 023143 279 ARSKMRK 285 (286)
Q Consensus 279 ak~~~~~ 285 (286)
++.++..
T Consensus 82 a~~~~pg 88 (89)
T 3ucg_A 82 KRTNRPG 88 (89)
T ss_dssp TTTTSCC
T ss_pred ccCCCCC
Confidence 9987643
No 132
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.5e-18 Score=129.04 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=72.5
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
++++|||+|||..+++++|+++|++||.|..|.+.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS---NRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS---SCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEEec
Confidence 589999999999999999999999999999999977 556789999999999999999999999998 5599999998
Q ss_pred cc
Q 023143 281 SK 282 (286)
Q Consensus 281 ~~ 282 (286)
.+
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 133
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=126.90 Aligned_cols=76 Identities=17% Similarity=0.224 Sum_probs=70.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+.++|||+|||.++|+++|+++|++||.|.+|+++. +.++|||||+|.+.++|.+|++ +||..+. |+.|.|.|
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~---gr~l~V~~ 85 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK---ETDLLILF 85 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT---TTTCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC---CEEEEEEE
Confidence 589999999999999999999999999999999987 5578999999999999999999 8999999 55999999
Q ss_pred ecc
Q 023143 279 ARS 281 (286)
Q Consensus 279 ak~ 281 (286)
+++
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 876
No 134
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.9e-18 Score=125.79 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=75.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
.....+.++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..|. |+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~ 85 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GR 85 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET---TE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 3345678999999999999999999999999999999998542 223459999999999999999999999998 99
Q ss_pred eEEEEEeecCCC
Q 023143 107 VLHIELARSNSR 118 (286)
Q Consensus 107 ~l~v~~~~~~~~ 118 (286)
.|+|+|++....
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999976543
No 135
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=1.6e-18 Score=126.37 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=70.8
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.++++|||+|||.++|+++|+++|++||.|..|++.+ +||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLE---GENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEET---TEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccC---CCEEEEEEcC
Confidence 3589999999999999999999999999999999873 58999999999999999999999999 5599999998
Q ss_pred cccC
Q 023143 281 SKMR 284 (286)
Q Consensus 281 ~~~~ 284 (286)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7654
No 136
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=8.2e-18 Score=122.91 Aligned_cols=84 Identities=26% Similarity=0.360 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC---Ce
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSG---SV 107 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g---~~ 107 (286)
..++++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|+|..+. | +.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---gg~~~~ 88 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM---PGASSS 88 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC---TTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC---CCCCcc
Confidence 456899999999999999999999999999999999854322 2459999999999999999999999997 6 99
Q ss_pred EEEEEeecCCC
Q 023143 108 LHIELARSNSR 118 (286)
Q Consensus 108 l~v~~~~~~~~ 118 (286)
|+|+|++....
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999986543
No 137
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=7.9e-18 Score=121.90 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
....+.++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|+|..+. |+.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 88 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK---ENII 88 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS---SCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC---CEEE
Confidence 34567899999999999999999999999999999999855422 2459999999999999999999999998 9999
Q ss_pred EEEEeecC
Q 023143 109 HIELARSN 116 (286)
Q Consensus 109 ~v~~~~~~ 116 (286)
+|++++..
T Consensus 89 ~v~~a~~~ 96 (100)
T 2do4_A 89 KVAISNSG 96 (100)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99998764
No 138
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=125.73 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 33 NGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
.++++|||+|||+++++++|+ ++|+.||.|.+|++..+..+ ++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~---gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIG---SKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEET---TEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 357899999999999999999 99999999999999855433 559999999999999999999999998 9999
Q ss_pred EEEEeecC
Q 023143 109 HIELARSN 116 (286)
Q Consensus 109 ~v~~~~~~ 116 (286)
+|++++..
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99998654
No 139
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=123.02 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=71.3
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.++++|||+|||.++++++|+++|++||.|..|++.+ +||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQ---GKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEET---TEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEEEEcc
Confidence 3589999999999999999999999999999999884 48999999999999999999999999 5599999998
Q ss_pred cccC
Q 023143 281 SKMR 284 (286)
Q Consensus 281 ~~~~ 284 (286)
.+.+
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8754
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=9.2e-19 Score=133.30 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=72.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceE--EEEee----cCCccEEEEEECCHHHHHHHHHhcCCC----ccCCCC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--LKMRA----RGGMPVAFADFEEVEQASIAMEGLQDS----TLPSSD 270 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~--v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~----~~~~~~ 270 (286)
.++++|||+|||.++|+++|+++|++||.|.. |+++. ++++|||||+|.+. +|.+|++.|||. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC---
Confidence 45889999999999999999999999999976 88876 45789999999999 999999999999 998
Q ss_pred CCcEEEEEeccccCC
Q 023143 271 RGGMHIEYARSKMRK 285 (286)
Q Consensus 271 g~~l~V~~ak~~~~~ 285 (286)
|+.|+|+||+.+.++
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 559999999887543
No 141
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=125.16 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC--ccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCc----cCC
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPG--FDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVK----FDP 102 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~----~~~ 102 (286)
.....+||||+|||+++|+++|+++|++||. |.+|++..+. ...++||||+|.+.++|.+|++.|||.. |.
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~- 83 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID- 83 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET-
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC-
Confidence 3556899999999999999999999999996 5677776432 2234599999999999999999999974 76
Q ss_pred CCCCeEEEEEeec
Q 023143 103 QSGSVLHIELARS 115 (286)
Q Consensus 103 ~~g~~l~v~~~~~ 115 (286)
||+|.|+|+++
T Consensus 84 --Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 --GKTIGVDFAKS 94 (95)
T ss_dssp --TEEEEEEECCC
T ss_pred --CEEEEEEEccC
Confidence 99999999874
No 142
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=127.61 Aligned_cols=79 Identities=10% Similarity=0.117 Sum_probs=72.0
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..+.++|||+|||.++++++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.||+ .+. |+.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~---g~~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID---GRKAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---CEEEE
Confidence 34689999999999999999999999999999999987 44678999999999999999999999 888 56999
Q ss_pred EEEeccc
Q 023143 276 IEYARSK 282 (286)
Q Consensus 276 V~~ak~~ 282 (286)
|+||+.+
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999764
No 143
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=125.55 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...+.++|||+|||.++++++|+++|+.||.|..|.+..... ..++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 85 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD---GREL 85 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT---TBCC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC---CcEE
Confidence 455789999999999999999999999999999998874422 22349999999999999999999999998 9999
Q ss_pred EEEEeecCCC
Q 023143 109 HIELARSNSR 118 (286)
Q Consensus 109 ~v~~~~~~~~ 118 (286)
+|++++....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dnm_A 86 RVQVARYGRR 95 (103)
T ss_dssp EEEECSSCCS
T ss_pred EEEECCcCCC
Confidence 9999976543
No 144
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=121.24 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCCccE-EEEccCCCCCCHHH----HHHHHhcCC-CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 200 VQPCST-LFIANLGPNCTEDE----LKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 200 ~~~~~~-L~v~NL~~~~te~~----L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
.+|+.| |||+|||..+++++ |+++|++|| .|.+| ..|+|||+|.+.++|.+|++.|||+.+. |+.
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~---gr~ 75 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVF---GNR 75 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSS---SSC
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccC---Cce
Confidence 346777 99999999999988 558999995 99888 1289999999999999999999999999 559
Q ss_pred EEEEEeccccC
Q 023143 274 MHIEYARSKMR 284 (286)
Q Consensus 274 l~V~~ak~~~~ 284 (286)
|+|+||+.+..
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999998764
No 145
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=126.63 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=71.1
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
..++++|||+|||.++++++|+++|++||.|..+....+++++||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE---GRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET---TEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC---CeEEEEEEc
Confidence 34689999999999999999999999999884333333567889999999999999999999999999 559999999
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
+.+.+
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87654
No 146
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.4e-18 Score=122.60 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
....++++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 86 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---GRR 86 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 3455789999999999999999999999999999999985533 23459999999999999999999999998 999
Q ss_pred EEEEEeec
Q 023143 108 LHIELARS 115 (286)
Q Consensus 108 l~v~~~~~ 115 (286)
|+|+|+++
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999864
No 147
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=126.03 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=71.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.+..++|||+|||..+++++|+++|++||.|..++++. +++++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC---CeEEE
Confidence 34578999999999999999999999999998666654 345789999999999999999999999999 55999
Q ss_pred EEEecccc
Q 023143 276 IEYARSKM 283 (286)
Q Consensus 276 V~~ak~~~ 283 (286)
|+|++.+.
T Consensus 89 V~~a~~~~ 96 (98)
T 2cqp_A 89 LVLGSGPS 96 (98)
T ss_dssp EEESSCSS
T ss_pred EEEcCCCC
Confidence 99998753
No 148
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=7.9e-19 Score=127.46 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=71.9
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecccc
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 283 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~~~ 283 (286)
++|||+|||.++|+++|+++|++||.|..|++..+ +++||||+|.+.++|.+|++.|||..+. |+.|+|+|++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC---GSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS---SCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC---CcEEEEEEccCCC
Confidence 57999999999999999999999999999999887 6799999999999999999999999998 5599999998765
Q ss_pred C
Q 023143 284 R 284 (286)
Q Consensus 284 ~ 284 (286)
+
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=124.24 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=74.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
+...+.++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..|. |+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 86 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY---GKP 86 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS---SCB
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 345678999999999999999999999999999999887542 223449999999999999999999999998 999
Q ss_pred EEEEEeecCC
Q 023143 108 LHIELARSNS 117 (286)
Q Consensus 108 l~v~~~~~~~ 117 (286)
|+|+++....
T Consensus 87 l~v~~a~~~~ 96 (105)
T 1x5u_A 87 IRVNKASAHN 96 (105)
T ss_dssp CEEEETTTTS
T ss_pred EEEEECCCCC
Confidence 9999987654
No 150
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.4e-19 Score=126.64 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=65.8
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCC--CceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G--~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.+|||+|||.++|+++|+++|++|| .|.+++++. ++++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS---SCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC---CEEEEEE
Confidence 4799999999999999999999999 999999887 356789999999999999999999999999 5599999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
+++.+..
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 9987643
No 151
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.7e-19 Score=129.26 Aligned_cols=79 Identities=11% Similarity=0.224 Sum_probs=72.8
Q ss_pred CccEEEEccCCCCCCHHHHH---HHHhcCCCceEEEEeec-------CCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 202 PCSTLFIANLGPNCTEDELK---QTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~---~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
+.++|||+|||.++++++|+ ++|++||.|..|++... .++|||||+|.+.++|.+|++.|||..+. |
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~---g 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD---G 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET---T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC---C
Confidence 57899999999999999999 99999999999999863 34579999999999999999999999998 5
Q ss_pred CcEEEEEecccc
Q 023143 272 GGMHIEYARSKM 283 (286)
Q Consensus 272 ~~l~V~~ak~~~ 283 (286)
+.|+|+||+.+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 599999999876
No 152
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.8e-18 Score=128.14 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
....+.++|||+|||.++++++|+++|+.||.|..|++..+.. ..++||||+|.+.++|.+|++.|||..|. |+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 111 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG---TKR 111 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET---TEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC---CEE
Confidence 3456779999999999999999999999999999999874421 23459999999999999999999999998 999
Q ss_pred EEEEEee
Q 023143 108 LHIELAR 114 (286)
Q Consensus 108 l~v~~~~ 114 (286)
|+|+|++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999874
No 153
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.6e-18 Score=122.09 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
+...+.++|||+|||.++++++|+++|+.||.|..|++..+.. ..++||||+|.+.++|.+|++ |++..|. |+.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~ 80 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM---GKK 80 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS---SCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC---CeE
Confidence 3455789999999999999999999999999999999974421 134499999999999999998 9999998 999
Q ss_pred EEEEEeecCCC
Q 023143 108 LHIELARSNSR 118 (286)
Q Consensus 108 l~v~~~~~~~~ 118 (286)
|+|+++.....
T Consensus 81 l~V~~a~~~~~ 91 (99)
T 2dgs_A 81 VEVKRAEPRDS 91 (99)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999976543
No 154
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=3.2e-18 Score=124.72 Aligned_cols=79 Identities=14% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+.++|||+|||.++++++|+++|++|| |..|+++.. .++|||||+|.+.++|.+|+ .|||..|. |+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG---DRSLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET---TEECEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC---CeEEEE
Confidence 3589999999999999999999999996 999999873 45789999999999999999 99999999 559999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
+|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987654
No 155
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=127.73 Aligned_cols=79 Identities=14% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
++.++|||+|||..+++++|+++|++||.|..|++... ++||||+|.+.++|.+|++.|||..+. |+.|+|+||+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE---GHVVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET---TEECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEEEecC
Confidence 35899999999999999999999999999999999887 499999999999999999999999999 5599999998
Q ss_pred cccC
Q 023143 281 SKMR 284 (286)
Q Consensus 281 ~~~~ 284 (286)
.+..
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8653
No 156
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=127.48 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=73.3
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCce--------EEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFN--------MLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~--------~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
.++++|||+|||.++++++|+++|++||.|. .|++.. +.+++||||+|.+.++|.+|++.|||..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ- 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET-
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC-
Confidence 4689999999999999999999999999998 688876 345789999999999999999999999999
Q ss_pred CCCCcEEEEEeccccC
Q 023143 269 SDRGGMHIEYARSKMR 284 (286)
Q Consensus 269 ~~g~~l~V~~ak~~~~ 284 (286)
|+.|+|+|++.+..
T Consensus 92 --g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 --GSKLKVSLARKKPP 105 (113)
T ss_dssp --TEECEEECSSCCCC
T ss_pred --CCEEEEEECCCCCC
Confidence 55999999987653
No 157
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.7e-18 Score=123.48 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCC-CCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 31 QDNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+++++|||+|||. .+++++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 76 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NA---FGFIQFDNPQSVRDAIECESQEMNF---GKKLI 76 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TT---EEEEEESCHHHHHHHHHHHTCSSCB---TTTBC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CC---EEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 456789999999998 99999999999999999999886 55 9999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|++++....
T Consensus 77 V~~a~~~~~ 85 (96)
T 2kvi_A 77 LEVSSSNAR 85 (96)
T ss_dssp EEEEECCCC
T ss_pred EEEcCcCCC
Confidence 999986543
No 158
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=129.41 Aligned_cols=77 Identities=17% Similarity=0.316 Sum_probs=71.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..++|||+|||..+++++|+++|++||.|..|+++. +.++|||||+|.+.++|.+|+ .|||..|. |+.|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL---GVPIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET---TEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC---CeEEEEE
Confidence 478999999999999999999999999999999986 456789999999999999999 99999998 5599999
Q ss_pred Eeccc
Q 023143 278 YARSK 282 (286)
Q Consensus 278 ~ak~~ 282 (286)
|++.+
T Consensus 100 ~a~~~ 104 (114)
T 2cq4_A 100 ASQAE 104 (114)
T ss_dssp EHHHH
T ss_pred ecCCC
Confidence 99865
No 159
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-18 Score=122.19 Aligned_cols=79 Identities=23% Similarity=0.352 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++. ..++ ||||+|.+.++|.+|++.|+|..|. |+.|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg---~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKG---FGFIRLETRTLAEIAKVELDNMPLR---GKQLRVR 84 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTT---EEEEECSSSHHHHHHHHHHTTCCBT---TBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCC---EEEEEECCHHHHHHHHHHhCCCEeC---CceEEEE
Confidence 4467899999999999999999999999999999988 4445 9999999999999999999999998 9999999
Q ss_pred EeecCC
Q 023143 112 LARSNS 117 (286)
Q Consensus 112 ~~~~~~ 117 (286)
|++...
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 997654
No 160
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.8e-18 Score=129.71 Aligned_cols=80 Identities=16% Similarity=0.283 Sum_probs=73.1
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||..+|+++|+++|++||.|..|.++. +.+++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 96 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPISV 96 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS---SSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---CeEEEE
Confidence 3588999999999999999999999999999999975 445789999999999999999999999998 559999
Q ss_pred EEecccc
Q 023143 277 EYARSKM 283 (286)
Q Consensus 277 ~~ak~~~ 283 (286)
+||+.+.
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9998764
No 161
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.8e-18 Score=119.90 Aligned_cols=74 Identities=15% Similarity=0.233 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
.+.-|||+||++.+||++|+++|++||+|.++++.. .+| ||||+|.++++|.+|++.||+..+. |++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kG---faFVey~~~~eA~~Ai~~Ln~~~l~---gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQG---IALCKYTTREEANKAQMALNNCVLA---NTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTT---EEEEEESSHHHHHHHHHHHTTEEET---TEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCc---EEEEEECCHHHHHHHHHHhcCCEEC---CcEEEEEEC
Confidence 366799999999999999999999999999999874 455 9999999999999999999999999 999999988
Q ss_pred e
Q 023143 114 R 114 (286)
Q Consensus 114 ~ 114 (286)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 162
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-19 Score=126.64 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCC-CccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHh-CCCccCCCCCCeEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKP-GFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHEL-NGVKFDPQSGSVLHI 110 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g~~l~v 110 (286)
+++|||+|||+++|+++|+++|+.|| .|.+|+|..+. ...++||||+|.+.++|.+|++.+ ++..+. |++|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CEEEEE
Confidence 57999999999999999999999999 79999887432 223459999999999999999987 566788 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
+|+...
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 998754
No 163
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.7e-18 Score=124.93 Aligned_cols=80 Identities=11% Similarity=0.192 Sum_probs=72.1
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCC--CCCcEEEEEe
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS--DRGGMHIEYA 279 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~--~g~~l~V~~a 279 (286)
..++|||+|||.++++++|+++|++||.|..|++..+ +||||+|.+.++|.+||+.|||..|.+. +++.|+|++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 4889999999999999999999999999999999887 8999999999999999999999999841 0159999999
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
+.+.+
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87653
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=9.3e-18 Score=125.60 Aligned_cols=80 Identities=24% Similarity=0.165 Sum_probs=70.3
Q ss_pred CCccE--EEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccE-EEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 201 QPCST--LFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPV-AFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 201 ~~~~~--L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~-afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+++++ |||+||+..+|+++|+++|++||.|.+|++... .|| |||+|.+.++|.+|+++|||..|.+. ++.|+|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~ 97 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIE 97 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEE
Confidence 34555 568999999999999999999999999999775 386 99999999999999999999999853 4699999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
|||.+-
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998763
No 165
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=124.78 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec-----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.+.++|||+|||.++++++|+++|+.|| |..|+++.. .+++||||+|.+.++|.+|| .|||..+. |+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET---TEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC---CcEEE
Confidence 3589999999999999999999999999 999999863 44789999999999999999 99999998 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+||+.+..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999988754
No 166
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.9e-18 Score=121.68 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcC--CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRK--PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...++++|||+|||.++++++|+++|+.| |.|..|++. ++ ||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 81 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RD---YAFVHFSNREDAVEAMKALNGKVLD---GSPI 81 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SS---EEEEEESSHHHHHHHHHHHSSEEET---TEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CC---eEEEEeCCHHHHHHHHHHhCCCEeC---CcEE
Confidence 34568999999999999999999999999 889888765 55 9999999999999999999999998 9999
Q ss_pred EEEEeecCCC
Q 023143 109 HIELARSNSR 118 (286)
Q Consensus 109 ~v~~~~~~~~ 118 (286)
+|++++....
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 167
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=126.26 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=73.3
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhc-CCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCc-cCCCCCCcEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSV-YPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDST-LPSSDRGGMH 275 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~-~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~-~~~~~g~~l~ 275 (286)
.++++|||+|||.++|+++|+++|++ ||.|..|+++. +.+++||||+|.+.++|.+|++.|||.. +. |+.|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~---g~~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG---SKPVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS---SSCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC---CEeEE
Confidence 35899999999999999999999999 99999999987 3456899999999999999999999999 98 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+|++.+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 168
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=122.04 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
+++++|||+|||.++++++|+++|++||.|..+++.+ +||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVK---GKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEECC
Confidence 4689999999999999999999999999999999984 48999999999999999999999999 5599999998
Q ss_pred cccC
Q 023143 281 SKMR 284 (286)
Q Consensus 281 ~~~~ 284 (286)
.+..
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 169
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=127.98 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=70.8
Q ss_pred CCccEEEE--ccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCcc-C--CCCCCcEE
Q 023143 201 QPCSTLFI--ANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTL-P--SSDRGGMH 275 (286)
Q Consensus 201 ~~~~~L~v--~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~-~--~~~g~~l~ 275 (286)
.|+++||| +||+.++++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|++.|||..+ . +. |++|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ-KITLY 99 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC-EEECE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCC-CcEEE
Confidence 46889999 669999999999999999999999988765 59999999999999999999999988 2 22 66999
Q ss_pred EEEecccc
Q 023143 276 IEYARSKM 283 (286)
Q Consensus 276 V~~ak~~~ 283 (286)
|.|++...
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99998654
No 170
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=120.40 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh-CCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL-NGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g~~l~v 110 (286)
..++++|||+|||.++++++|+++|+.||.|..|++. ..++ ||||+|.+.++|.+|++.| +|..+. |+.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg---~afV~f~~~~~A~~a~~~l~~~~~~~---g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQ---CAFIQFATRQAAEVAAEKSFNKLIVN---GRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGT---EEEEEESSHHHHHHHHHTTTTTCEET---TEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCC---EEEEEECCHHHHHHHHHHhcCCeeEC---CCEEEE
Confidence 4567899999999999999999999999999999988 3344 9999999999999999998 999998 999999
Q ss_pred EEee
Q 023143 111 ELAR 114 (286)
Q Consensus 111 ~~~~ 114 (286)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 171
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=126.18 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=71.5
Q ss_pred CccEEEEccCCCCC------CHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCC-
Q 023143 202 PCSTLFIANLGPNC------TEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG- 272 (286)
Q Consensus 202 ~~~~L~v~NL~~~~------te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~- 272 (286)
.+++|||+|||..+ |+++|+++|++||.|..|++.+ +.++|||||+|.+.++|.+|++.|||..+. |+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD---KQH 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS---TTC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC---CCc
Confidence 47899999999999 7899999999999999999885 456789999999999999999999999998 76
Q ss_pred cEEEEEeccc
Q 023143 273 GMHIEYARSK 282 (286)
Q Consensus 273 ~l~V~~ak~~ 282 (286)
.|+|+||...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 172
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=121.11 Aligned_cols=81 Identities=16% Similarity=0.233 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC---CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG---NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
.+.++|||+|||.++++++|+++|+.||.|..|++...... .++||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 78 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID---GQEIT 78 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC---CeEEE
Confidence 35789999999999999999999999999999988744321 2349999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|+++...
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998653
No 173
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.3e-18 Score=122.93 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEE-EEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFC-QLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
.++++|||+|||.++++++|+++|+.||.|..| ++..+. ...++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET---TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 358999999999999999999999999999998 887431 122449999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+++.....
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999976543
No 174
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=121.98 Aligned_cols=80 Identities=19% Similarity=0.286 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF---GRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET---TEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 44678999999999999999999999999999999874422 12349999999999999999999999998 99999
Q ss_pred EEEee
Q 023143 110 IELAR 114 (286)
Q Consensus 110 v~~~~ 114 (286)
|+|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99974
No 175
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=6e-18 Score=124.08 Aligned_cols=82 Identities=26% Similarity=0.337 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
+...++++|||+|||..+++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|+|..|. |+.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 100 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD---GRPM 100 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEE
Confidence 34567899999999999999999999999999999999865433 2459999999999999999999999998 9999
Q ss_pred EEEEee
Q 023143 109 HIELAR 114 (286)
Q Consensus 109 ~v~~~~ 114 (286)
+|+++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999975
No 176
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.6e-18 Score=126.51 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=72.5
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+.++|||+|||..+++++|+++|++||.|..+++... .++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS---GRALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS---SSCBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEEE
Confidence 4789999999999999999999999999999999863 34689999999999999999999999998 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 998764
No 177
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.6e-18 Score=136.08 Aligned_cols=79 Identities=18% Similarity=0.275 Sum_probs=72.1
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
++++|||+|||..+++++|+.+|++||.|..|.++.. .++|||||+|.+.++|.+||+.|||..|. |+.|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQTIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEEE
Confidence 5889999999999999999999999999999999873 35789999999999999999999999998 5699999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 998654
No 178
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.3e-18 Score=124.51 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=72.8
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec---CCccEEEEEECCHHHHHHHHHhcCCCccCCC-----CCC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSS-----DRG 272 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~Al~~lng~~~~~~-----~g~ 272 (286)
.+.++|||+|||.++++++|+++|++||.|..++++.+ .+++||||+|.+.++|.+|++.|||..+.++ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45889999999999999999999999999999999873 4568999999999999999999999999543 156
Q ss_pred cEEEEEeccc
Q 023143 273 GMHIEYARSK 282 (286)
Q Consensus 273 ~l~V~~ak~~ 282 (286)
+|.|.||+.+
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999854
No 179
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.1e-18 Score=124.17 Aligned_cols=86 Identities=20% Similarity=0.352 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhC------CCccCC
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELN------GVKFDP 102 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~------g~~~~~ 102 (286)
...+.++|||+|||.++++++|+++|+.||.|..|++..+.. ..++||||+|.+.++|.+|++.|+ |..|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 355789999999999999999999999999999999885422 234499999999999999999999 99998
Q ss_pred CCCCeEEEEEeecCCCC
Q 023143 103 QSGSVLHIELARSNSRK 119 (286)
Q Consensus 103 ~~g~~l~v~~~~~~~~~ 119 (286)
|+.|+|+++......
T Consensus 90 --g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 --GRQLKVDLAVTRDEA 104 (111)
T ss_dssp --SCEEEEECCCCCCCC
T ss_pred --CEEEEEEECCCCccC
Confidence 999999999765443
No 180
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=2.9e-18 Score=134.24 Aligned_cols=79 Identities=10% Similarity=0.073 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKP--GFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
+.++|||+|||+++|+++|+++|+.|| .|..|++..+. ...++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~---Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN---GEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET---TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEeE
Confidence 568999999999999999999999999 89999988553 223569999999999999999999999998 99999
Q ss_pred EEEeec
Q 023143 110 IELARS 115 (286)
Q Consensus 110 v~~~~~ 115 (286)
|.++..
T Consensus 131 V~~a~~ 136 (156)
T 3n9u_C 131 VRPATR 136 (156)
T ss_dssp EEECCH
T ss_pred EEEcCC
Confidence 999864
No 181
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=6.6e-18 Score=117.93 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
+.+|||+|||.++++++|+++|+.||.|..+++..... ..++||||+|.+.++|.+|++.|+|..+. |+.|+|++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEEEEEe
Confidence 35899999999999999999999999999999885522 23559999999999999999999999998 99999999
Q ss_pred eecC
Q 023143 113 ARSN 116 (286)
Q Consensus 113 ~~~~ 116 (286)
++..
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8754
No 182
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=3.1e-18 Score=128.74 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=69.8
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccE-EEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPV-AFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~-afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
--.|||+||+..+|+++|+++|++||.|.+|++.... ++| |||+|.+.++|.+|++.|||..|.+. .+.|+|+|||.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~LrI~~ak~ 105 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDFSKL 105 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEEEEECSC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEEEEecCC
Confidence 3456699999999999999999999999999887753 577 99999999999999999999999852 36999999987
Q ss_pred cc
Q 023143 282 KM 283 (286)
Q Consensus 282 ~~ 283 (286)
+.
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 183
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=3.9e-18 Score=122.61 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
++++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG---SRFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 478999999999999999999999999999999874421 22449999999999999999999999998 9999999
Q ss_pred EeecCC
Q 023143 112 LARSNS 117 (286)
Q Consensus 112 ~~~~~~ 117 (286)
+++.+.
T Consensus 78 ~a~~~~ 83 (96)
T 2x1f_A 78 YSSNSD 83 (96)
T ss_dssp ECSCSS
T ss_pred EcCCCC
Confidence 997654
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=119.10 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=69.3
Q ss_pred CCCCCCe-EEEcCCCCCCCHHH----HHHHhhcC-CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 31 QDNGINT-LFVSGLPDDVRARE----IHNLFRRK-PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 31 ~~~~~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
..+++.| |||+|||+++++++ |+++|+.| |.|..| . .+ +|||.|.+.++|.+|++.|+|..+.
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t-gG---~AfV~F~~~esA~~A~~~l~G~~l~--- 72 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T-GC---SAILRFINQDSAERAQKRMENEDVF--- 72 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C-TT---CEEEEESSHHHHHHHHHHHTTCCSS---
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e-cC---EEEEEECCHHHHHHHHHHhcCCccC---
Confidence 3445777 99999999999998 55899999 499877 2 24 9999999999999999999999998
Q ss_pred CCeEEEEEeecCCCCCc
Q 023143 105 GSVLHIELARSNSRKKR 121 (286)
Q Consensus 105 g~~l~v~~~~~~~~~~~ 121 (286)
||+|+|.|++.+.+...
T Consensus 73 gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 73 GNRIIVSFTPKNRELCE 89 (96)
T ss_dssp SSCCEEESSCCSCCCCC
T ss_pred CceEEEEecCCCcceeE
Confidence 99999999998776543
No 185
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=122.57 Aligned_cols=84 Identities=23% Similarity=0.379 Sum_probs=74.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...++++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..|. |+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 87 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD---HLIL 87 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC---CcEE
Confidence 35678999999999999999999999999999999998542 223459999999999999999999999998 9999
Q ss_pred EEEEeecCC
Q 023143 109 HIELARSNS 117 (286)
Q Consensus 109 ~v~~~~~~~ 117 (286)
+|+|++...
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 186
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=123.60 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++..+.. ..++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEE
Confidence 45689999999999999999999999999999998874321 23449999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|++++....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999876543
No 187
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=7.1e-18 Score=123.47 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++..+.. ..++||||+|.+.++|.+|++.|+|..+....|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45689999999999999999999999999999999874322 2344999999999999999999999987222399999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999976543
No 188
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=4.6e-18 Score=121.93 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
...+.++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY---GRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CCEEE
Confidence 3456899999999999999999999999999999999855433 2459999999999999999999999998 99999
Q ss_pred EEEeec
Q 023143 110 IELARS 115 (286)
Q Consensus 110 v~~~~~ 115 (286)
|+++++
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 189
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.1e-18 Score=123.67 Aligned_cols=78 Identities=19% Similarity=0.365 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC-----C
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG-----S 106 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g-----~ 106 (286)
....++|||+|||+++++++|+++|+.||.|..|+|..+ + ||||+|.+.++|.+|++.|||..|. | +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g---~afV~f~~~~~a~~Ai~~l~g~~~~---g~~~~~~ 83 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--G---TGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETA 83 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--T---EEEEEESSHHHHHHHHHHSSSEEEE---CTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--C---EEEEEECCHHHHHHHHHHHCcCCcc---CCcCcce
Confidence 456789999999999999999999999999999998843 4 9999999999999999999999998 8 9
Q ss_pred eEEEEEeecCC
Q 023143 107 VLHIELARSNS 117 (286)
Q Consensus 107 ~l~v~~~~~~~ 117 (286)
.|+|+++....
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999987643
No 190
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=7.6e-18 Score=126.94 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=73.5
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.++++|||+|||..+++++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS---SCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC---CcEEEEE
Confidence 3589999999999999999999999999999999987 446789999999999999999999999998 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 998754
No 191
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=122.60 Aligned_cols=82 Identities=20% Similarity=0.267 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..++++|||+|||.++++++|+++|+.||.|..|.+..... ..++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS---SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC---CcEEE
Confidence 45679999999999999999999999999999999985432 23459999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|+++...
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9998764
No 192
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=5e-18 Score=123.69 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..++++|||+|||.++|+++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|+|..|. |+.|+|+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KD---YAFIHFDERDGAVKAMEEMNGKDLE---GENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SS---CEEEEESSHHHHHHHHHHHTTEEET---TEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CC---EEEEEeCCHHHHHHHHHHHCCCccC---CCEEEEE
Confidence 4467999999999999999999999999999999887 55 9999999999999999999999998 9999999
Q ss_pred EeecCCC
Q 023143 112 LARSNSR 118 (286)
Q Consensus 112 ~~~~~~~ 118 (286)
+++....
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9976543
No 193
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=120.68 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=64.7
Q ss_pred ccEEEEccCCCCC------CHHHHHHHHhcCCCceEEEEee--cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCC-c
Q 023143 203 CSTLFIANLGPNC------TEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG-G 273 (286)
Q Consensus 203 ~~~L~v~NL~~~~------te~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~-~ 273 (286)
+++|||+|||..+ ++++|+++|++||.|..+++.+ ++++|||||+|.+.++|.+|++.|||..+. |+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD---KQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS---SSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC---Ccee
Confidence 4789999999999 7799999999999999999875 456789999999999999999999999998 66 7
Q ss_pred EEE
Q 023143 274 MHI 276 (286)
Q Consensus 274 l~V 276 (286)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 776
No 194
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7e-18 Score=124.20 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
....++|||+|||.++++++|+++|+.||.|..|++... ++ ||||+|.+.++|.+|++.|+|..|. |+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KG---YSFVRFSTHESAAHAIVSVNGTTIE---GHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TT---EEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CC---EEEEEECCHHHHHHHHHHcCCCEEC---CcEEEEE
Confidence 446789999999999999999999999999999998833 44 9999999999999999999999998 9999999
Q ss_pred EeecCCCC
Q 023143 112 LARSNSRK 119 (286)
Q Consensus 112 ~~~~~~~~ 119 (286)
|++.....
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99875443
No 195
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=125.72 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=69.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec-----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
...++|||+|||.++++++|+++|+.|| |..|++... +++|||||+|.+.++|.+|+ .|||..+. |+.|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~---g~~l~ 91 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NRRIR 91 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT---TBCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC---CeEEE
Confidence 4589999999999999999999999999 999999763 35789999999999999999 99999999 55999
Q ss_pred EEEecccc
Q 023143 276 IEYARSKM 283 (286)
Q Consensus 276 V~~ak~~~ 283 (286)
|+||+.+-
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 196
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.8e-18 Score=120.65 Aligned_cols=76 Identities=24% Similarity=0.441 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..+.++|||+|||.++|+++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |+.|+|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KD---YAFVHMEKEADAKAAIAQLNGKEVK---GKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SS---CEEEEESCHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CC---EEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEE
Confidence 4568899999999999999999999999999999888 55 9999999999999999999999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
+++..
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98765
No 197
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=6.4e-18 Score=132.53 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=73.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..++++|||+|||..+|+++|+++|++||.|..|+++.. .+++||||+|.+.++|.+||+.|||..|. |+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD---DRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 346899999999999999999999999999999999873 35679999999999999999999999998 55999
Q ss_pred EEEecccc
Q 023143 276 IEYARSKM 283 (286)
Q Consensus 276 V~~ak~~~ 283 (286)
|+||+.+.
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998754
No 198
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=8.3e-18 Score=123.99 Aligned_cols=75 Identities=20% Similarity=0.253 Sum_probs=69.5
Q ss_pred CccEEEEccCCCC-CCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
++++|||+|||.. +++++|+++|++||.|..|++ +++||||+|.+.++|.+|++.|||..+. |+.|+|+|++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLA---GQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEET---TEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEECC
Confidence 4789999999999 999999999999999999998 4589999999999999999999999999 5599999998
Q ss_pred ccc
Q 023143 281 SKM 283 (286)
Q Consensus 281 ~~~ 283 (286)
.+.
T Consensus 99 ~~~ 101 (110)
T 1wf1_A 99 EPK 101 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 199
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=126.97 Aligned_cols=80 Identities=24% Similarity=0.239 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
...+++|||+|||+++++++|+++|+.||.|..|.+. ..++ ||||+|.+.++|.+|++.|||..+. |++|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 79 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGI---TAIVEFLEPLEARKAFRHLAYSKFH---HVPLYLE 79 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSS---CEEEEESCHHHHHHHHHHHTTCBSS---SSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCC---EEEEEeCCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 3457899999999999999999999999999988876 3444 9999999999999999999999998 9999999
Q ss_pred EeecCCC
Q 023143 112 LARSNSR 118 (286)
Q Consensus 112 ~~~~~~~ 118 (286)
|+.....
T Consensus 80 ~a~~~~~ 86 (111)
T 1whx_A 80 WAPIGVF 86 (111)
T ss_dssp EEETTTT
T ss_pred ECCCCcc
Confidence 9986543
No 200
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-18 Score=123.05 Aligned_cols=78 Identities=27% Similarity=0.306 Sum_probs=69.1
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCC-ceEEEEeecCCccEEEEEECCHHHHHHHHHhcCC-CccCCCCCCcEEEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPG-FNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD-STLPSSDRGGMHIEY 278 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~-v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng-~~~~~~~g~~l~V~~ 278 (286)
.+.++|||+|||.++|+++|+++|++||. |..+.+. +++||||+|.+.++|.+|++.||| ..+. |+.|+|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELH---GKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEET---TEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeEC---CEEEEEEE
Confidence 35889999999999999999999999999 6666553 348999999999999999999999 9998 56999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
|+.+..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987654
No 201
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-19 Score=124.23 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=70.7
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
+++++|||+|||.++++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ---AQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC---EESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe---eEEEee
Confidence 3689999999999999999999999999999999876 455789999999999999999999999999 559988
Q ss_pred EEecc
Q 023143 277 EYARS 281 (286)
Q Consensus 277 ~~ak~ 281 (286)
+|+++
T Consensus 80 ~~~~s 84 (85)
T 1x4e_A 80 SGPSS 84 (85)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87764
No 202
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.2e-18 Score=120.44 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=69.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC-ccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCC-CccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG-VKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g-~~~~~~~g~~l 108 (286)
...+.++|||+|||.++|+++|+++|+.||. |..+.+. .++ ||||+|.+.++|.+|++.||| ..+. |+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g---~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l 75 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSG---YAFVDYPDQNWAIRAIETLSGKVELH---GKIM 75 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETT---EEEECCSCHHHHHHHHHHHTTTCEET---TEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCC---EEEEEECCHHHHHHHHHHccCCeeEC---CEEE
Confidence 3456789999999999999999999999999 6666654 244 999999999999999999999 9998 9999
Q ss_pred EEEEeecCC
Q 023143 109 HIELARSNS 117 (286)
Q Consensus 109 ~v~~~~~~~ 117 (286)
+|++++...
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997653
No 203
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=121.09 Aligned_cols=79 Identities=19% Similarity=0.234 Sum_probs=71.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEE-EeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLK-MRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~-~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.+++|||+|||.++++++|+++|++||.|..++ ++.....+.|||+|.+.++|.+|++.|||..+. |+.|+|+||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE---NFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS---SCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEcC
Confidence 478999999999999999999999999999995 777655567999999999999999999999999 5599999998
Q ss_pred ccc
Q 023143 281 SKM 283 (286)
Q Consensus 281 ~~~ 283 (286)
.+.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
No 204
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.1e-18 Score=121.32 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=73.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCcc-EEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFD-FCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
...++++|||+|||.++++++|+++|+.||.|. .|++.... ...++||||+|.+.++|.+|++.|||..+. |+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 81 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP---GAT 81 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES---SCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC---CCC
Confidence 355789999999999999999999999999999 99988543 223459999999999999999999999998 998
Q ss_pred ----EEEEEeecC
Q 023143 108 ----LHIELARSN 116 (286)
Q Consensus 108 ----l~v~~~~~~ 116 (286)
|+|+|++..
T Consensus 82 ~~~~l~v~~a~~~ 94 (99)
T 2div_A 82 PAKRFKLNYATYS 94 (99)
T ss_dssp SCEECCEEETTCC
T ss_pred cceeEEEeecCCC
Confidence 999998754
No 205
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=126.62 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC---CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG---RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~---~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
....++|||+|||.++++++|+++|+.|| |..|++.... ...++||||+|.+.++|.+|+ .|+|..|. |+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~---g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT---TBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC---CeEE
Confidence 45689999999999999999999999999 9999887443 223459999999999999999 89999998 9999
Q ss_pred EEEEeecC
Q 023143 109 HIELARSN 116 (286)
Q Consensus 109 ~v~~~~~~ 116 (286)
+|++++..
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998754
No 206
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=5.4e-18 Score=128.57 Aligned_cols=85 Identities=20% Similarity=0.293 Sum_probs=74.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
.....++++|||+|||.++++++|+++|+.||.|..|++..+.. ..++||||+|.+.++|.+|++.|+|..|. |+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~---g~ 116 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---GR 116 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS---SS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CE
Confidence 34466789999999999999999999999999999999984422 23449999999999999999999999998 99
Q ss_pred eEEEEEeecC
Q 023143 107 VLHIELARSN 116 (286)
Q Consensus 107 ~l~v~~~~~~ 116 (286)
.|+|+|+..+
T Consensus 117 ~l~V~~a~~~ 126 (129)
T 2kxn_B 117 RIRVDFSITK 126 (129)
T ss_dssp CCEESCCSSS
T ss_pred EEEEEEecCC
Confidence 9999998754
No 207
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=3.4e-18 Score=133.83 Aligned_cols=78 Identities=13% Similarity=0.077 Sum_probs=70.5
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCC--CceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G--~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..++|||+|||.++|+++|+++|++|| .|..|+++. ++++|||||+|.+.++|.+||+.|||..|. |+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~---Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN---GEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET---TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEeE
Confidence 478999999999999999999999999 999999976 456789999999999999999999999999 56999
Q ss_pred EEEeccc
Q 023143 276 IEYARSK 282 (286)
Q Consensus 276 V~~ak~~ 282 (286)
|+||+.+
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999653
No 208
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=119.57 Aligned_cols=82 Identities=20% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
....++++|||+|||.++++++|+++|+.||.|..|.+. ..++ ||||+|.+.++|.+|++.|||..+. ..|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g---~afV~f~~~~~A~~A~~~l~g~~~~-~~g~~l~ 86 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDS---FAYIQYESLDAAQAACAKMRGFPLG-GPDRRLR 86 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSC---CEEEEESSHHHHHHHHHHHTTCBCS-SSSCBCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCC---EEEEEECCHHHHHHHHHHHCCCEeC-CCCcEEE
Confidence 345568999999999999999999999999999999887 3344 9999999999999999999999883 2279999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|+|++..
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998764
No 209
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.74 E-value=9.6e-18 Score=126.08 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeE-EEEEEcCHHHHHHHHHHhCCCccCCCCC--CeEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVV-AFATFVNHQTAVAALHELNGVKFDPQSG--SVLHI 110 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~-aFV~F~~~~~A~~A~~~l~g~~~~~~~g--~~l~v 110 (286)
....|||+||++.+|+++|+++|++||.|.+|++..+. ++| |||+|.+.++|.+|++.|||..|. | +.|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~---g~~~~LrI 100 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIY---NACCTLRI 100 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEE---TTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeec---CCCcEEEE
Confidence 34557799999999999999999999999999887433 236 999999999999999999999997 6 89999
Q ss_pred EEeecCCCCC
Q 023143 111 ELARSNSRKK 120 (286)
Q Consensus 111 ~~~~~~~~~~ 120 (286)
+|++...-..
T Consensus 101 ~~ak~~~l~v 110 (130)
T 3zzy_A 101 DFSKLTSLNV 110 (130)
T ss_dssp EECSCSSCCC
T ss_pred EecCCCceeE
Confidence 9998765433
No 210
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=4.1e-18 Score=125.43 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=68.2
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 27 HHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 27 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
.......+.++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.+ +..+.
T Consensus 17 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~--- 92 (109)
T 2rs2_A 17 RGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD--- 92 (109)
T ss_dssp ---------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET---
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC---
Confidence 334456678999999999999999999999999999999988542 223449999999999999999986 58887
Q ss_pred CCeEEEEEeecCC
Q 023143 105 GSVLHIELARSNS 117 (286)
Q Consensus 105 g~~l~v~~~~~~~ 117 (286)
|+.|+|+++....
T Consensus 93 g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 93 SKTIDPKVAFPRR 105 (109)
T ss_dssp TEEEEEEECCCCC
T ss_pred CEEEEEEEccCCC
Confidence 9999999987643
No 211
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=123.95 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=72.3
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
..++++|||+|||..+++++|+++|+.||.|..+ ...+.++|||||+|.+.++|.+|++.|||..+. |+.|+|+|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET---TEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEEEc
Confidence 3468999999999999999999999999999877 444667789999999999999999999999998 559999999
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
+.+-+
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87654
No 212
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=1.4e-18 Score=124.70 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=68.7
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
++.++|||+|||..+++++|+++|++||.|..+.++. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~l~v 89 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVKL 89 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC---CcEEEE
Confidence 3579999999999999999999999999998777765 345689999999999999999999999999 559999
Q ss_pred EEecc
Q 023143 277 EYARS 281 (286)
Q Consensus 277 ~~ak~ 281 (286)
+++.+
T Consensus 90 ~~a~s 94 (95)
T 2ek1_A 90 SGPSS 94 (95)
T ss_dssp ECCC-
T ss_pred EeccC
Confidence 99864
No 213
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=7.9e-18 Score=125.10 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
.++++|||+|||.++++++|+++|+.||.|..|.+..+++ .++||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVS---NRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSS---SCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEE
Confidence 3578999999999999999999999999999999984433 3559999999999999999999999998 99999999
Q ss_pred eecC
Q 023143 113 ARSN 116 (286)
Q Consensus 113 ~~~~ 116 (286)
+...
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 8753
No 214
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=123.10 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC-CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG-RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.++.++|||+|||.++++++|+++|+.||.|..|.+.... ...++||||+|.+.++|.+|++.|+|..|. |+.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH---GKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS---SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 4567899999999999999999999999999999998543 122349999999999999999999999998 999999
Q ss_pred EEeecCC
Q 023143 111 ELARSNS 117 (286)
Q Consensus 111 ~~~~~~~ 117 (286)
++++...
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9997654
No 215
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=5.2e-18 Score=120.16 Aligned_cols=81 Identities=23% Similarity=0.231 Sum_probs=64.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
.++..+|||+|||.++|+++|+++|++||.|.+|+++.. ++|||||+|.+.++|. .|+|..+... |+.|.|.+|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIK-GISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEET-TEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccC-CEEEEEEEc
Confidence 346899999999999999999999999999999999875 7799999999999998 3567766544 779999999
Q ss_pred ccccCCC
Q 023143 280 RSKMRKL 286 (286)
Q Consensus 280 k~~~~~~ 286 (286)
+.+-.+|
T Consensus 82 ~~k~~~~ 88 (89)
T 3d2w_A 82 EPKHNKL 88 (89)
T ss_dssp C------
T ss_pred CCCCcCC
Confidence 8876553
No 216
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.4e-18 Score=123.72 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=71.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCC-ceEEEEe-e----cCCccEEEEEECCHHHHHHHHHhcC--CCccCCCCCC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPG-FNMLKMR-A----RGGMPVAFADFEEVEQASIAMEGLQ--DSTLPSSDRG 272 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~-v~~v~~~-~----~~~~~~afV~f~~~e~A~~Al~~ln--g~~~~~~~g~ 272 (286)
.++++|||+|||..+++++|+++|++||. |..|.++ . +.++|||||+|.+.++|.+|++.|| +..+. |+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~---g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW---GH 82 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---TB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec---CC
Confidence 35899999999999999999999999998 9999987 3 3567899999999999999999996 58898 56
Q ss_pred cEEEEEecccc
Q 023143 273 GMHIEYARSKM 283 (286)
Q Consensus 273 ~l~V~~ak~~~ 283 (286)
.|+|+||+.+.
T Consensus 83 ~l~V~~a~~~~ 93 (109)
T 2dis_A 83 QIAVDWAEPEI 93 (109)
T ss_dssp CCEEEESCSSC
T ss_pred eEEEEEcCCCC
Confidence 99999998764
No 217
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=4e-18 Score=124.63 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=73.2
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.++.++|||+|||..+++++|+++|++||.|..|+++.. .+++||||+|.+.++|.+||+. ||..|. |+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD---GRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET---TEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC---CEEEE
Confidence 346899999999999999999999999999999999873 4567999999999999999999 999999 55999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+|++.+..
T Consensus 89 V~~a~~~~~ 97 (105)
T 2dh8_A 89 PKPCTPRGM 97 (105)
T ss_dssp CCCSCCSSC
T ss_pred EEEccCCCC
Confidence 999987653
No 218
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=125.39 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH---HHhhcCCCccEEEEEecCC-----CCeeEEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 32 DNGINTLFVSGLPDDVRAREIH---NLFRRKPGFDFCQLKYTGR-----GNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~~~~-----~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
..+.++|||+|||+++++++|+ ++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 3457899999999999999999 9999999999999874322 23469999999999999999999999998
Q ss_pred CCCeEEEEEeecCC
Q 023143 104 SGSVLHIELARSNS 117 (286)
Q Consensus 104 ~g~~l~v~~~~~~~ 117 (286)
|+.|+|+++....
T Consensus 90 -gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 -GRTLKASLGTTKY 102 (111)
T ss_dssp -TEEEEEESCCCCS
T ss_pred -CEEEEEEeccccc
Confidence 9999999987654
No 219
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=118.59 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=71.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..++|||+|||.++++++|+++|+.| .|..|+++. ++++|||||+|.+.++|.+|++ |||..+. |+.|+|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEEEEEE
Confidence 58899999999999999999999999 999999987 3457899999999999999999 9999999 55999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
|+.+..
T Consensus 84 a~~~~~ 89 (91)
T 2dgw_A 84 EKSGPS 89 (91)
T ss_dssp ESSCCC
T ss_pred CCcCCC
Confidence 988753
No 220
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=128.34 Aligned_cols=77 Identities=17% Similarity=0.311 Sum_probs=70.3
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
.++.++|||+|||..+++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET---TEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 34689999999999999999999999999999999976 456789999999999999999999999999 55999
Q ss_pred EEEe
Q 023143 276 IEYA 279 (286)
Q Consensus 276 V~~a 279 (286)
|+||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 221
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=7.4e-18 Score=124.06 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=70.2
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.++++|||+|||.++++++|+++|+.||.|..|++.. +.++|||||+|.+.++|.+|++.+ |..+. |+.|+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~---g~~l~V 98 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD---SKTIDP 98 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET---TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC---CEEEEE
Confidence 4589999999999999999999999999999999987 456789999999999999999987 58888 569999
Q ss_pred EEeccccC
Q 023143 277 EYARSKMR 284 (286)
Q Consensus 277 ~~ak~~~~ 284 (286)
++|+.+..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 222
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=119.40 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.++++|||+|| ++++++|+++|++||.|..|++. .+++||||+|.+.++|.+|++.|||..+. |+.|+|+||+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET---TEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEECC
Confidence 35899999996 89999999999999999999985 45599999999999999999999999998 5699999998
Q ss_pred cccC
Q 023143 281 SKMR 284 (286)
Q Consensus 281 ~~~~ 284 (286)
.+..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 223
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.9e-18 Score=121.77 Aligned_cols=78 Identities=6% Similarity=-0.012 Sum_probs=66.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCC--CccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKP--GFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
.+|||+|||+++|+++|+++|+.|| .|.+|++..+. ...++||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS---SCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC---CEEEEEE
Confidence 4799999999999999999999999 99999988643 234569999999999999999999999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
++...
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 88754
No 224
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=123.20 Aligned_cols=85 Identities=24% Similarity=0.386 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCcc--------EEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCcc
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFD--------FCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKF 100 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (286)
...++++|||+|||.++++++|+++|+.||.|. .|++..... ..++||||+|.+.++|.+|++.|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 588875422 2244999999999999999999999999
Q ss_pred CCCCCCeEEEEEeecCCC
Q 023143 101 DPQSGSVLHIELARSNSR 118 (286)
Q Consensus 101 ~~~~g~~l~v~~~~~~~~ 118 (286)
. |+.|+|++++....
T Consensus 91 ~---g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 Q---GSKLKVSLARKKPP 105 (113)
T ss_dssp T---TEECEEECSSCCCC
T ss_pred C---CCEEEEEECCCCCC
Confidence 8 99999999876543
No 225
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=9.7e-18 Score=126.68 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...++++|||+|||.++|+++|+++|+.||.|..|.+.... ...++||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 94 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPI 94 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS---SSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---CeEE
Confidence 34568999999999999999999999999999999887542 222449999999999999999999999998 9999
Q ss_pred EEEEeecCCC
Q 023143 109 HIELARSNSR 118 (286)
Q Consensus 109 ~v~~~~~~~~ 118 (286)
.|+|+.....
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999986543
No 226
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=9.2e-18 Score=118.33 Aligned_cols=75 Identities=11% Similarity=0.211 Sum_probs=67.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+.++|||+|||..+++++|+++|++||.|..++++. +.++|||||+|.+.++|.+|++. +|..+. |+.|.|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~---g~~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD---GRVIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET---TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC---CEEEEE
Confidence 4689999999999999999999999999999999986 44578999999999999999965 788888 569999
Q ss_pred EEe
Q 023143 277 EYA 279 (286)
Q Consensus 277 ~~a 279 (286)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 227
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=121.14 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhc-CCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCc-cCCCCCCe
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRR-KPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVK-FDPQSGSV 107 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~-~~~~~g~~ 107 (286)
...++++|||+|||.++|+++|+++|+. ||.|..|++.....+ .++||||+|.+.++|.+|++.|+|.. +. |+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~---g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG---SKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS---SSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC---CEe
Confidence 3456899999999999999999999999 999999999855322 35599999999999999999999999 98 999
Q ss_pred EEEEEeecCCC
Q 023143 108 LHIELARSNSR 118 (286)
Q Consensus 108 l~v~~~~~~~~ 118 (286)
|+|+++.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999876543
No 228
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=121.98 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
...++++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF---DRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC---CCEEE
Confidence 3556899999999999999999999999999999998855333 2459999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|++++..
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9998653
No 229
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=123.37 Aligned_cols=82 Identities=23% Similarity=0.475 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++...... .++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 81 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS---GRALR 81 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS---SSCBE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---CcEEE
Confidence 345789999999999999999999999999999999855322 2459999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|+++...
T Consensus 82 v~~a~~~ 88 (104)
T 1p1t_A 82 VDNAASE 88 (104)
T ss_dssp EEETTCT
T ss_pred EEeCCCc
Confidence 9998754
No 230
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=1.1e-17 Score=123.38 Aligned_cols=84 Identities=20% Similarity=0.289 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...++++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|+|..|. |+.|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l 98 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQTI 98 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CcEE
Confidence 355689999999999999999999999999999998874421 22449999999999999999999999998 9999
Q ss_pred EEEEeecCC
Q 023143 109 HIELARSNS 117 (286)
Q Consensus 109 ~v~~~~~~~ 117 (286)
+|+|+....
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999997653
No 231
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=7.7e-18 Score=126.86 Aligned_cols=79 Identities=14% Similarity=0.263 Sum_probs=72.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+.++|||+|||.++|+++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|+ .|||..|. |+.|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR---GRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET---TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEEE
Confidence 378999999999999999999999999999999976 456789999999999999999 89999998 5599999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
|++.+..
T Consensus 111 ~a~~~~~ 117 (124)
T 2jwn_A 111 PKRTNMP 117 (124)
T ss_dssp ESSCCCS
T ss_pred ECCCCCC
Confidence 9998764
No 232
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=130.12 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=71.8
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceE--------EEEe-ecCCccEEEEEECCHHHHHHHHHhcCCCccCCCC
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--------LKMR-ARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 270 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~--------v~~~-~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~ 270 (286)
..++++|||+|||.++|+++|+++|++||.|.. +++. .+.++|||||+|.+.++|.+|++.|||..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--- 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF--- 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC---
Confidence 346899999999999999999999999999876 4443 3778899999999999999999999999998
Q ss_pred CCcEEEEEecccc
Q 023143 271 RGGMHIEYARSKM 283 (286)
Q Consensus 271 g~~l~V~~ak~~~ 283 (286)
|+.|+|+||+...
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 5699999998754
No 233
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=6.1e-18 Score=122.95 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=68.6
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEe-ecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMR-ARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~-~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.+++++|||+|||.++++++|+++|+.|+.|..+... .+.+++||||+|.+.++|.+||+.|||..|. |+.|+|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID---GNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEE
Confidence 3468999999999999999999999988644333221 2455789999999999999999999999999 55999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
|+.+.+
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 988754
No 234
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.73 E-value=5.2e-18 Score=119.95 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=70.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
.+++|||+|||.++++++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.|||..+. |+.|+|+||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR---GKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET---TEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC---CcEEEEEEcCC
Confidence 47899999999999999999999999 99999886 56699999999999999999999999999 55999999987
Q ss_pred cc
Q 023143 282 KM 283 (286)
Q Consensus 282 ~~ 283 (286)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 235
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.2e-18 Score=116.14 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=65.3
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 205 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 205 ~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
+|||+|||.++++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|++ |||..+. |+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~---g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN---NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS---SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC---CEEEEEEeC
Confidence 489999999999999999999999999999876 4567899999999999999998 9999999 559999986
No 236
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.3e-18 Score=125.47 Aligned_cols=81 Identities=16% Similarity=0.322 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|+ .|+|..|. |+.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 97 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL---GVPII 97 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET---TEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC---CeEEE
Confidence 45678999999999999999999999999999999984432 23449999999999999999 99999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|++++..
T Consensus 98 V~~a~~~ 104 (114)
T 2cq4_A 98 VQASQAE 104 (114)
T ss_dssp EEEHHHH
T ss_pred EEecCCC
Confidence 9998754
No 237
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.9e-18 Score=125.03 Aligned_cols=79 Identities=15% Similarity=0.215 Sum_probs=72.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+.++|||+|||..+++++|+++|+.||.|..|+++. +.++|||||+|.+.++|.+||+. ||..|. |+.|+|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID---GRVVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET---TEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC---CEEEEEE
Confidence 479999999999999999999999999999999987 44678999999999999999998 999998 5599999
Q ss_pred EeccccC
Q 023143 278 YARSKMR 284 (286)
Q Consensus 278 ~ak~~~~ 284 (286)
||+.+..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987653
No 238
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=7.3e-18 Score=122.13 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 33 NGINTLFVSGLPD------DVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 33 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
..+++|||+|||+ ++++++|+++|+.||.|.+|+|..... ..++||||+|.+.++|.+|++.|||..|.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--- 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD--- 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS---
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC---
Confidence 3478999999999 999999999999999999999885543 13349999999999999999999999998
Q ss_pred C-CeEEEEEeec
Q 023143 105 G-SVLHIELARS 115 (286)
Q Consensus 105 g-~~l~v~~~~~ 115 (286)
| +.|+|.++..
T Consensus 81 g~r~l~V~~a~~ 92 (100)
T 3ns6_A 81 LKHRLFLYTMKD 92 (100)
T ss_dssp SSCBCEEEESHH
T ss_pred CCeEEEEEECch
Confidence 9 9999999864
No 239
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=119.91 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
....++|||+|||.++++++|+++|+.||.|..+.+...... .++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC---CeEEE
Confidence 445688999999999999999999999999987766644222 3459999999999999999999999998 99999
Q ss_pred EEEeec
Q 023143 110 IELARS 115 (286)
Q Consensus 110 v~~~~~ 115 (286)
|+++..
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 999864
No 240
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.2e-17 Score=119.33 Aligned_cols=82 Identities=16% Similarity=0.255 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.|| |..|++..... ..++||||+|.+.++|.+|+ .|+|..|. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG---DRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET---TEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC---CeEEE
Confidence 44678999999999999999999999997 99999985532 23459999999999999999 89999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dng_A 87 VDIAEGRKQ 95 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEecCCCC
Confidence 999976543
No 241
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.4e-17 Score=117.90 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+.++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|+ .++|..+. |+.|+|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~---g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR---GRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET---TEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC---CcEEEEE
Confidence 46899999999999999999999999999999998543 223559999999999999999 99999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
+++.+
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 98764
No 242
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=2.3e-18 Score=122.30 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=67.5
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
++|||+|||.++++++|+++|++||.|..+++.. +.++|||||+|.+.+ |.+|++.|||..+. |+.|+|+||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~---g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM---GRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS---SSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC---CeEEEEEEc
Confidence 5899999999999999999999999999999986 456789999999999 99999999999999 559999999
Q ss_pred ccccC
Q 023143 280 RSKMR 284 (286)
Q Consensus 280 k~~~~ 284 (286)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87643
No 243
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=3.7e-17 Score=120.52 Aligned_cols=76 Identities=24% Similarity=0.420 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...+++|||+|||.+ +++++|+++|+.||.|..|.+. ++ ||||+|.+.++|.+|++.|+|..|. |+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH---KG---YAFVQYSNERHARAAVLGENGRVLA---GQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE---TT---EEEEECSSSHHHHHHHHHHTTCEET---TEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe---CC---EEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 445689999999999 9999999999999999999883 55 9999999999999999999999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
++++..
T Consensus 95 ~~a~~~ 100 (110)
T 1wf1_A 95 NMAGEP 100 (110)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 998754
No 244
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=121.68 Aligned_cols=83 Identities=28% Similarity=0.385 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCcc----EEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFD----FCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~----~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
...++++|||+|||.++|+++|+++|+.||.|. .+++. ....++||||+|.+.++|.+|++.|+|..|. |+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~ 95 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLY---GK 95 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCS---SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeC---Cc
Confidence 355789999999999999999999999999994 44444 2223459999999999999999999999998 99
Q ss_pred eEEEEEeecCCC
Q 023143 107 VLHIELARSNSR 118 (286)
Q Consensus 107 ~l~v~~~~~~~~ 118 (286)
.|+|+|++....
T Consensus 96 ~l~v~~a~~~~~ 107 (115)
T 2cpx_A 96 ILVIEFGKNKKQ 107 (115)
T ss_dssp BCEEEECCCCSC
T ss_pred EEEEEEccCCCC
Confidence 999999986543
No 245
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=121.25 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC---CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR---GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~---~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
.+.++|||+|||.++++++|+++|+.|| |..|++..... ..++||||+|.+.++|.+|+ .|+|..|. |+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET---TEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC---CcEEE
Confidence 4568999999999999999999999999 99999875432 22459999999999999999 99999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+++.....
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999976543
No 246
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.73 E-value=2.5e-17 Score=128.38 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
...+|||+||++.+|+++|+++|++||.|.+|++..+ ..++||||+|.+.++|.+|++.|||..|. +.++.|+|+|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIY-NACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSS-SSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEec-CCCcEEEEEEe
Confidence 3466899999999999999999999999999998632 23559999999999999999999999995 12499999999
Q ss_pred ecCC
Q 023143 114 RSNS 117 (286)
Q Consensus 114 ~~~~ 117 (286)
+...
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8754
No 247
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=115.83 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=66.4
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
++|||+|||.++++++|+++|++||.|..+++.. +.++|||||+|.+.++|.+|++.++ ..+. |+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~---g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD---SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS---SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC---CEEEEEEec
Confidence 4799999999999999999999999999999976 4457899999999999999999999 8888 559999987
No 248
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=120.96 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCC------CHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC
Q 023143 32 DNGINTLFVSGLPDDV------RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (286)
...+++|||+|||+.+ ++++|+++|+.||.|..|.+.......++||||+|.+.++|.+|++.|||..|. |
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~---g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD---K 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS---T
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC---C
Confidence 3447899999999999 789999999999999999887322233459999999999999999999999998 9
Q ss_pred C-eEEEEEeec
Q 023143 106 S-VLHIELARS 115 (286)
Q Consensus 106 ~-~l~v~~~~~ 115 (286)
+ .|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999864
No 249
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=1.9e-16 Score=119.20 Aligned_cols=83 Identities=25% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
...++++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS---SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC---CcEEE
Confidence 4567789999999999999999999999999999999854322 2449999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|+++...
T Consensus 108 V~~a~~~ 114 (124)
T 2kt5_A 108 IQLVASQ 114 (124)
T ss_dssp EEEECCT
T ss_pred EEEeCCC
Confidence 9998754
No 250
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=123.68 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=70.9
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCc-eEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGF-NMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v-~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+.++|||+|||.++|+++|+++|+.||.| ..|+++. ++++|||||+|.+.++|.+||+. ||..|. |+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN---GREAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET---TEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC---CeEEEE
Confidence 358899999999999999999999999999 8888876 55788999999999999999988 999999 559999
Q ss_pred EEeccc
Q 023143 277 EYARSK 282 (286)
Q Consensus 277 ~~ak~~ 282 (286)
.+|+.+
T Consensus 89 ~~a~~~ 94 (114)
T 2cpy_A 89 HVVTLE 94 (114)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998764
No 251
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=126.22 Aligned_cols=77 Identities=8% Similarity=0.021 Sum_probs=67.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..++|||+|||.++|+++|+++|+.||.|..+.++. ++++|||||+|.+.++|.+||+ |||..|. |+.|.|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG---NRFIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST---TSCBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEEEE
Confidence 478999999999999999999999999987633332 5567899999999999999999 9999999 5599999
Q ss_pred Eeccc
Q 023143 278 YARSK 282 (286)
Q Consensus 278 ~ak~~ 282 (286)
+|+.+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 252
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=8e-18 Score=123.85 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=69.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCC-CccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKP-GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
....+|||+|||+++++++|+++|+.|| .|..+.+.. +..++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~---Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFR---GSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEET---TEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEE
Confidence 3467899999999999999999999999 899888752 123449999999999999999999999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 253
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.3e-18 Score=124.24 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=69.3
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCcc-C-CCCCC
Q 023143 31 QDNGINTLFV--SGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF-D-PQSGS 106 (286)
Q Consensus 31 ~~~~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~-~-~~~g~ 106 (286)
...++++||| +||++++++++|+++|++||.|..|.+. .+++ ||||+|.+.++|.+|++.|||..+ . .+.|+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rg---faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKP---YSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCS---CEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 3456899999 7799999999999999999999988776 4444 999999999999999999999987 1 11288
Q ss_pred eEEEEEeec
Q 023143 107 VLHIELARS 115 (286)
Q Consensus 107 ~l~v~~~~~ 115 (286)
+|.|.|++.
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999864
No 254
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=5.2e-18 Score=118.02 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=63.7
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC-e
Q 023143 35 INTLFVSGLPDDV------RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS-V 107 (286)
Q Consensus 35 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~-~ 107 (286)
+++|||+|||..+ ++++|+++|+.||.|.+|++.......++||||+|.+.++|.+|++.|||..+. |+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD---KQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS---SSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC---Ccee
Confidence 4789999999999 789999999999999999887322233459999999999999999999999998 88 7
Q ss_pred EEE
Q 023143 108 LHI 110 (286)
Q Consensus 108 l~v 110 (286)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 765
No 255
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3.5e-17 Score=115.34 Aligned_cols=80 Identities=19% Similarity=0.366 Sum_probs=68.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
+...+.++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++. ++..+. |+.
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~---g~~ 81 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD---GRV 81 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET---TEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC---CEE
Confidence 3455789999999999999999999999999999999985532 2355999999999999999964 778898 999
Q ss_pred EEEEEe
Q 023143 108 LHIELA 113 (286)
Q Consensus 108 l~v~~~ 113 (286)
|.|+++
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999875
No 256
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=9.8e-18 Score=120.65 Aligned_cols=83 Identities=19% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----HHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 31 QDNGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
+..++++|||+|||.++++++|+ ++|+.||.|..|.+...+ ..++||||+|.+.++|.+|++.|+|..+. |+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~ 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALRSMQGFPFY---DK 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHH-HHTTCEEEEESSHHHHHHHHHHHTTCEET---TE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCC-CcCcEEEEEeCCHHHHHHHHHHhCCCEEC---Cc
Confidence 44568999999999999999999 999999999998876221 11239999999999999999999999998 99
Q ss_pred eEEEEEeecCC
Q 023143 107 VLHIELARSNS 117 (286)
Q Consensus 107 ~l~v~~~~~~~ 117 (286)
.|+|+|++...
T Consensus 80 ~l~v~~a~~~~ 90 (97)
T 1nu4_A 80 PMRIQYAKTDS 90 (97)
T ss_dssp ECEEEECSSCC
T ss_pred EEEEEEccCCC
Confidence 99999997654
No 257
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=119.50 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=69.6
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.+.++|||+|||..+++++|+++|++||.|..|+++. +.++|||||+|.+.++|.+|++. +..+. |+.|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMID---GRWCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEET---TEEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeC---CeEEEE
Confidence 4588999999999999999999999999999999987 34578999999999999999994 67887 569999
Q ss_pred EEecccc
Q 023143 277 EYARSKM 283 (286)
Q Consensus 277 ~~ak~~~ 283 (286)
.|++.+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998764
No 258
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=121.73 Aligned_cols=86 Identities=21% Similarity=0.291 Sum_probs=73.7
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 27 HHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 27 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
+......+.++|||+|||.++++++|+++|+.||.|..|+|.... ...++||||+|.+.++|.+|++.+++ .|.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~--- 84 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID--- 84 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---
Confidence 334456678999999999999999999999999999999988432 12344999999999999999999999 787
Q ss_pred CCeEEEEEeecC
Q 023143 105 GSVLHIELARSN 116 (286)
Q Consensus 105 g~~l~v~~~~~~ 116 (286)
|+.|+|+++...
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999998754
No 259
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=2.6e-18 Score=155.90 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=72.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+.++|||+|||..+|+++|+.+|++||.|..|.|+. +.++|||||+|.+.++|.+||..|||..|. |+.|.|.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~---gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID---GRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC---CEEEEEE
Confidence 578999999999999999999999999999999975 456789999999999999999999999998 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
||+.+.
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998653
No 260
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.72 E-value=1.5e-17 Score=136.25 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=71.8
Q ss_pred CCccEEEEccCC-CCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 201 QPCSTLFIANLG-PNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 201 ~~~~~L~v~NL~-~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
+++++|||+||| ..+++++|+++|++||.|.+|+++.. .+|||||+|.+.++|.+||+.|||..+. |+.|+|.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMF---GQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEET---TEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEEC---CceEEEEEc
Confidence 368999999999 89999999999999999999999875 3699999999999999999999999999 559999999
Q ss_pred ccc
Q 023143 280 RSK 282 (286)
Q Consensus 280 k~~ 282 (286)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 753
No 261
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=1.2e-17 Score=119.77 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..+.+...... .++||||+|.+.++|.+|++.|||..|. |+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC---CcEEE
Confidence 335689999999999999999999999999987777754332 3459999999999999999999999998 99999
Q ss_pred EEEeec
Q 023143 110 IELARS 115 (286)
Q Consensus 110 v~~~~~ 115 (286)
|+++.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 998753
No 262
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=117.52 Aligned_cols=83 Identities=17% Similarity=0.308 Sum_probs=71.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEE-EEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQ-LKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
.+....+++|||+|||+++++++|+++|+.||.|..|+ +...... +.|||+|.+.++|.+|++.|||..|. |+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~---g~~ 83 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLE---NFT 83 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCS---SCB
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEEC---CcE
Confidence 34445678999999999999999999999999999995 5533222 24999999999999999999999998 999
Q ss_pred EEEEEeecC
Q 023143 108 LHIELARSN 116 (286)
Q Consensus 108 l~v~~~~~~ 116 (286)
|+|+++...
T Consensus 84 l~V~~a~~~ 92 (96)
T 2e44_A 84 LKVAYIPDE 92 (96)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCcc
Confidence 999998765
No 263
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=1.4e-16 Score=119.26 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeE-EEEEEcCHHHHHHHHHHhCCCccCCCCC--CeE
Q 023143 34 GINT--LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVV-AFATFVNHQTAVAALHELNGVKFDPQSG--SVL 108 (286)
Q Consensus 34 ~~~~--lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~-aFV~F~~~~~A~~A~~~l~g~~~~~~~g--~~l 108 (286)
++++ |||+||++.+++++|+++|+.||.|.+|+|.. .. +| |||+|.+.++|.+|++.|||..|. | +.|
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~~---Gf~aFVef~~~~~A~~A~~~LnG~~i~---g~~~~l 94 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-RN---GIQAMVEFESVLCAQKAKAALNGADIY---AGCCTL 94 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-SS---SEEEEEEESSHHHHHHHHHHHTTCCCB---TTBSEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CC---CCEEEEEECCHHHHHHHHHHhCCCEec---CCCeEE
Confidence 4544 67999999999999999999999999999863 22 46 999999999999999999999997 6 699
Q ss_pred EEEEeecCCC
Q 023143 109 HIELARSNSR 118 (286)
Q Consensus 109 ~v~~~~~~~~ 118 (286)
+|++++...-
T Consensus 95 ~V~~Ak~~~l 104 (124)
T 2e5i_A 95 KIEYARPTRL 104 (124)
T ss_dssp EEECCSCSCC
T ss_pred EEEEecCCcc
Confidence 9999987653
No 264
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=120.55 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC-CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..+.++|||+|||+++|+++|+++|+.||.|.+|++..+.. ..++||||+|.+.++|.+|+. ++|..+. |+.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~---gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK---ETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT---TTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC---CEEEEE
Confidence 44679999999999999999999999999999999984422 234599999999999999999 8999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
.++...
T Consensus 84 ~~~~~~ 89 (103)
T 1s79_A 84 LFKDDY 89 (103)
T ss_dssp EEHHHH
T ss_pred EEchHH
Confidence 987653
No 265
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.2e-17 Score=116.51 Aligned_cols=79 Identities=23% Similarity=0.411 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
...+++|||+|||.++++++|+++|+.||.|. +.+... ..++||||+|.+.++|.+|++.|||..|. |+.|+|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLG---TDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSS---SSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEE
Confidence 34578999999999999999999999999996 555532 12339999999999999999999999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
+++..
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98754
No 266
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=2.9e-17 Score=127.93 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=72.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...+.++|||+|||+++++++|+++|+.||.|.+|++....++ ||||+|.+.++|.+|++.|||..|. |++|+|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 142 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPG---FAFVEFEDPRDAADAVRELDGRTLC---GCRVRV 142 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCS---EEEEEESSHHHHHHHHHHHSSSCSS---SSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCc---EEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 3557899999999999999999999999999999999854344 9999999999999999999999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
+|++..
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998754
No 267
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=7.5e-18 Score=122.25 Aligned_cols=79 Identities=27% Similarity=0.310 Sum_probs=69.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEe---ecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMR---ARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~---~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
+.++|||+|||.++|+++|+++|++||.|..+.+. .+.++|||||+|.+.++|.+|++ |||..+. |+.|+|+|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT---TBCCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC---CcEEEEEE
Confidence 58899999999999999999999999988762222 26778999999999999999998 9999999 56999999
Q ss_pred eccccC
Q 023143 279 ARSKMR 284 (286)
Q Consensus 279 ak~~~~ 284 (286)
|+.+..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987643
No 268
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3.4e-17 Score=115.71 Aligned_cols=78 Identities=24% Similarity=0.532 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
..+++|||+|||.++++++|+++|+.| .|..|++. ..++ ||||+|.+.++|.+|++.|||..+. |+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~ 74 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKR---TAFVTLLNGEQAQNAIQMFHQYSFR---GKDLIVQL 74 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGT---EEEECCSCHHHHHHHHHHHTTEEET---TEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCc---EEEEEECCHHHHHHHHHHhCCCeEC---CcEEEEEE
Confidence 457899999999999999999999999 99999885 4444 9999999999999999999999998 99999999
Q ss_pred eecCCC
Q 023143 113 ARSNSR 118 (286)
Q Consensus 113 ~~~~~~ 118 (286)
+.....
T Consensus 75 a~~~~~ 80 (88)
T 1wg1_A 75 QPTDAL 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCce
Confidence 876543
No 269
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=121.09 Aligned_cols=84 Identities=19% Similarity=0.270 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC-ccEEEEE-ecCC--CCeeEEEEEEcCHHHHHHHHHHhC--CCccCCCC
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLK-YTGR--GNQVVAFATFVNHQTAVAALHELN--GVKFDPQS 104 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~~~~--~~~~~aFV~F~~~~~A~~A~~~l~--g~~~~~~~ 104 (286)
.+.++++|||+|||.++++++|+++|+.||. |..|.+. .... ..++||||+|.+.++|.+|++.|+ +..+.
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~--- 80 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW--- 80 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---
T ss_pred cccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec---
Confidence 3456899999999999999999999999998 9999876 2211 234599999999999999999996 58898
Q ss_pred CCeEEEEEeecCC
Q 023143 105 GSVLHIELARSNS 117 (286)
Q Consensus 105 g~~l~v~~~~~~~ 117 (286)
|+.|+|+|++...
T Consensus 81 g~~l~V~~a~~~~ 93 (109)
T 2dis_A 81 GHQIAVDWAEPEI 93 (109)
T ss_dssp TBCCEEEESCSSC
T ss_pred CCeEEEEEcCCCC
Confidence 9999999997643
No 270
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=116.00 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
.....+.++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++ ++..|. |+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~---g~ 83 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID---GR 83 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET---TE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC---Ce
Confidence 34456789999999999999999999999999999999985532 234599999999999999998 467887 99
Q ss_pred eEEEEEeecCCC
Q 023143 107 VLHIELARSNSR 118 (286)
Q Consensus 107 ~l~v~~~~~~~~ 118 (286)
.|.|+++.....
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cqg_A 84 WCDCKLPNSKQS 95 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEEecCCCCc
Confidence 999999876544
No 271
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-16 Score=114.69 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..++++|||+|| ++++++|+++|+.||.|..|.+. ..++ ||||+|.+.++|.+|++.|+|..|. |+.|+|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRN---CAFVTYEKMESADQAVAELNGTQVE---SVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHTTTEEET---TEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCC---EEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 456799999996 89999999999999999999886 4455 9999999999999999999999998 9999999
Q ss_pred EeecCC
Q 023143 112 LARSNS 117 (286)
Q Consensus 112 ~~~~~~ 117 (286)
|++...
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 987654
No 272
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=118.16 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=70.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
.+...+.++|||+|||..+++++|+++|+.||.|..+ . .....++||||+|.+.++|.+|++.|+|..|. |+.|
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 83 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSV 83 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEET---TEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 3445678999999999999999999999999998776 3 22334569999999999999999999999998 9999
Q ss_pred EEEEeecC
Q 023143 109 HIELARSN 116 (286)
Q Consensus 109 ~v~~~~~~ 116 (286)
+|+++...
T Consensus 84 ~v~~a~~~ 91 (96)
T 1fjc_A 84 SLYYTGEK 91 (96)
T ss_dssp EEEECSSS
T ss_pred EEEEcCCC
Confidence 99998654
No 273
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=119.23 Aligned_cols=81 Identities=19% Similarity=0.292 Sum_probs=68.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec-CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
...+.++|||+|||.++++++|+++|+.||.| ++... ....++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE---GRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET---TEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC---CeEEE
Confidence 35578999999999999999999999999987 33322 2223449999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023143 110 IELARSNS 117 (286)
Q Consensus 110 v~~~~~~~ 117 (286)
|++++...
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99987653
No 274
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=119.24 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
....+.++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++. ++..|. |+.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~ 86 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD---GRN 86 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET---TEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC---CEE
Confidence 3456789999999999999999999999999999999985422 2345999999999999999998 999998 999
Q ss_pred EEEEEeecCCC
Q 023143 108 LHIELARSNSR 118 (286)
Q Consensus 108 l~v~~~~~~~~ 118 (286)
|+|+++.....
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999876543
No 275
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.5e-17 Score=117.61 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=69.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceE-EEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNM-LKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~-v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
..++|||+|||.++|+++|+++|++||.|.. |++.. ++++|||||+|.+.++|.+||+. ||..++ |+.|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---gr~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG---HRYIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS---SSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC---CcEEEEE
Confidence 5789999999999999999999999999987 77764 56688999999999999999998 999998 5599999
Q ss_pred Eeccc
Q 023143 278 YARSK 282 (286)
Q Consensus 278 ~ak~~ 282 (286)
++..+
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98654
No 276
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=124.83 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccE--EEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCC----ccC
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF--CQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGV----KFD 101 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~----~~~ 101 (286)
....++++|||+|||+++|+++|+++|+.||.|.. |+|..+. ...++||||+|.+. +|.+|++.|||. .+.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34567899999999999999999999999999966 8887543 22345999999999 999999999999 898
Q ss_pred CCCCCeEEEEEeecC
Q 023143 102 PQSGSVLHIELARSN 116 (286)
Q Consensus 102 ~~~g~~l~v~~~~~~ 116 (286)
|+.|+|++++..
T Consensus 97 ---gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 ---GKTINVEFAKGS 108 (131)
T ss_dssp ---GCCCCCEECCCS
T ss_pred ---CEEEEEEECCCC
Confidence 999999999764
No 277
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=2.3e-17 Score=123.16 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=69.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCC---ceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPG---FNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~---v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..++|||+|||.++|+++|+++|+.||. |..|+++. ++++|||||+|.+.++|.+||+ |||..|. |+.|+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---HRYIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---TEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---CeEEE
Confidence 4789999999999999999999999999 88999876 4567899999999999999999 9999998 55999
Q ss_pred EEEeccc
Q 023143 276 IEYARSK 282 (286)
Q Consensus 276 V~~ak~~ 282 (286)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=116.75 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.....++|||+|||.++++++|+++|+.||.|..| +. .....+ ||||+|.+.++|.+|++ |+|..|. |+.|+|
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~-~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~---g~~l~V 76 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM-DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG---GHRLRV 76 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE-CSSSCC-EEEEEESSHHHHHHHHT-CSCCEET---TEECCC
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE-cCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC---CEEEEE
Confidence 34567899999999999999999999999999987 33 322223 99999999999999999 9999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
+++...
T Consensus 77 ~~a~~~ 82 (94)
T 2e5g_A 77 RPREQK 82 (94)
T ss_dssp BCSCCS
T ss_pred EECCcC
Confidence 977543
No 279
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=113.34 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
...+.++|||+|||+++++++|+++|+.| .|..|++.....+ .++||||+|.+.++|.+|++ |+|..|. |+.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEEE
Confidence 34567999999999999999999999999 8999999865322 35599999999999999999 9999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|.++...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9998754
No 280
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=9.5e-18 Score=126.37 Aligned_cols=81 Identities=14% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.+.++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|+ .|+|..|. |+.|+|
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~V 109 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR---GRTIKV 109 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET---TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEE
Confidence 356899999999999999999999999999999988542 233569999999999999999 79999998 999999
Q ss_pred EEeecCC
Q 023143 111 ELARSNS 117 (286)
Q Consensus 111 ~~~~~~~ 117 (286)
++++...
T Consensus 110 ~~a~~~~ 116 (124)
T 2jwn_A 110 LPKRTNM 116 (124)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9987643
No 281
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.5e-18 Score=118.95 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
.++++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|||..+. |+.+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ---AQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC---EESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe---eEEEee
Confidence 4689999999999999999999999999999999885421 22449999999999999999999999998 888877
Q ss_pred EEee
Q 023143 111 ELAR 114 (286)
Q Consensus 111 ~~~~ 114 (286)
.+++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6653
No 282
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.9e-17 Score=116.73 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..++++|||+|||.++++++|+++|+.|+ .|++.... ...++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID---GNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC---CeEEE
Confidence 45789999999999999999999999885 44555332 223459999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+|++....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987544
No 283
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=117.52 Aligned_cols=86 Identities=19% Similarity=0.284 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCC-----C
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDP-----Q 103 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~-----~ 103 (286)
....+.++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.|||..|.. .
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567799999999999999999999999999999999855322 34599999999999999999999999831 1
Q ss_pred CCCeEEEEEeec
Q 023143 104 SGSVLHIELARS 115 (286)
Q Consensus 104 ~g~~l~v~~~~~ 115 (286)
.+++|.|.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 278899999874
No 284
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=1.1e-16 Score=125.35 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..++++|||+|||.++|+++|+++|+.||.|..|.|..... ..++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD---DRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 45779999999999999999999999999999999985533 23459999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023143 110 IELARSNS 117 (286)
Q Consensus 110 v~~~~~~~ 117 (286)
|+|++...
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99997643
No 285
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=8e-17 Score=128.74 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=74.1
Q ss_pred CCCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 200 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
..++++|||+|||..+++++|+++|++||.|..|.+.. +.+++||||+|.+.++|.+|++.|||..+. |+.|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~---Gr~l~V 161 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMDI 161 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS---SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 34589999999999999999999999999999999987 556789999999999999999999999998 559999
Q ss_pred EEecccc
Q 023143 277 EYARSKM 283 (286)
Q Consensus 277 ~~ak~~~ 283 (286)
+||....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9998654
No 286
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.70 E-value=7e-17 Score=120.97 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=69.3
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.++++|||+|| ++++++|+++|++||.|..|++. .++|||||+|.+.++|.+|++.|||..+. |+.|+|+||+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE---SVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCS---SCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEEEeC
Confidence 35899999996 69999999999999999999987 45699999999999999999999999998 5599999998
Q ss_pred ccc
Q 023143 281 SKM 283 (286)
Q Consensus 281 ~~~ 283 (286)
.+.
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 287
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=8.7e-17 Score=120.00 Aligned_cols=82 Identities=13% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC---ccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPG---FDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (286)
+...+.++|||+|||+++|+++|+++|+.||. |..|+|.....+ .++||||+|.+.++|.+|++ ++|..|. |
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---g 87 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---H 87 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---T
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---C
Confidence 34556899999999999999999999999999 889998865443 25599999999999999999 9999998 9
Q ss_pred CeEEEEEeec
Q 023143 106 SVLHIELARS 115 (286)
Q Consensus 106 ~~l~v~~~~~ 115 (286)
+.|+|.++..
T Consensus 88 r~i~V~~a~~ 97 (118)
T 2db1_A 88 RYIEVFKSHR 97 (118)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEECCH
Confidence 9999998864
No 288
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=2.4e-17 Score=112.77 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=65.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
+|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++ ++|..+. |+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~---g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN---NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS---SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC---CEEEEEEeC
Confidence 59999999999999999999999999999887442 2234599999999999999998 9999998 999999875
No 289
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5e-17 Score=116.29 Aligned_cols=78 Identities=10% Similarity=0.188 Sum_probs=67.8
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
..++|||+|||.++++++|+++|++||.|..|.+....++ ||||+|.+.++|.+|++ |||..+. |+.|+|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~---g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG---GHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEET---TEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC---CEEEEEEECCc
Confidence 4789999999999999999999999999999833333333 99999999999999999 9999999 55999999876
Q ss_pred ccC
Q 023143 282 KMR 284 (286)
Q Consensus 282 ~~~ 284 (286)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 290
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=3.2e-17 Score=125.03 Aligned_cols=77 Identities=9% Similarity=0.085 Sum_probs=69.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCC---ceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPG---FNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~---v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..++|||+|||.++|+++|+++|++||. |..|+++. ++++|||||+|.+.++|.+||+ |||..|. |+.|+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---gr~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG---HRYIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---SSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---CEEEE
Confidence 4789999999999999999999999999 88898876 4567899999999999999999 9999999 55999
Q ss_pred EEEeccc
Q 023143 276 IEYARSK 282 (286)
Q Consensus 276 V~~ak~~ 282 (286)
|.+|..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998643
No 291
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=1.1e-16 Score=125.68 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
....++|||+|||+++++++|+++|+.||.|..|++..+ ....++||||+|.+.++|.+|++.|||..|. |++|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS---SSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 455789999999999999999999999999999988754 2224559999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023143 110 IELARSNS 117 (286)
Q Consensus 110 v~~~~~~~ 117 (286)
|++++...
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99997653
No 292
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=3e-17 Score=120.41 Aligned_cols=77 Identities=12% Similarity=0.029 Sum_probs=69.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCC---ceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPG---FNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~---v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..++|||+|||.++|+++|+++|+.||. |..|+++. ++++|||||+|.+.++|.+||+ +||..++ |+.|+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i~ 85 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG---QRYVE 85 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS---SSCCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC---CeEEE
Confidence 5889999999999999999999999888 89999876 5568899999999999999999 9999998 55999
Q ss_pred EEEeccc
Q 023143 276 IEYARSK 282 (286)
Q Consensus 276 V~~ak~~ 282 (286)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 293
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=3.4e-17 Score=136.25 Aligned_cols=78 Identities=14% Similarity=0.109 Sum_probs=70.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCC--CceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G--~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..++|||+||+.++|+++|+++|++|| .|..|+|+. ++++|||||+|.+.++|.+||+.|||..|. |+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~---Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT---TBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC---CEEeE
Confidence 478999999999999999999999999 999999987 446789999999999999999999999999 55999
Q ss_pred EEEeccc
Q 023143 276 IEYARSK 282 (286)
Q Consensus 276 V~~ak~~ 282 (286)
|.||+.+
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998753
No 294
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=115.75 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=70.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccE-EEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF-CQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
+...+.++|||+|||+++|+++|+++|+.||.|.. |+|.....+ .++||||+|.+.++|.+|++. ++..|. |+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---gr~ 85 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG---HRY 85 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS---SSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC---CcE
Confidence 34556799999999999999999999999999987 777644222 245999999999999999997 999998 999
Q ss_pred EEEEEeecC
Q 023143 108 LHIELARSN 116 (286)
Q Consensus 108 l~v~~~~~~ 116 (286)
|.|.++...
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 999987543
No 295
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=125.44 Aligned_cols=82 Identities=24% Similarity=0.341 Sum_probs=71.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccE--------EEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCC
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF--------CQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (286)
...++++|||+|||+++|+++|+++|+.||.|.. +++... ...++||||+|.+.++|.+|++.|||..|.
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~-g~~~g~afV~f~~~~~A~~Ai~~lng~~~~- 118 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE-GRMKGQAFIGLPNEKAAAKALKEANGYVLF- 118 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE-TTTEEEEEEECSSHHHHHHHHHHHTTBEET-
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC-CCcccEEEEEeCCHHHHHHHHHHhCCCEeC-
Confidence 3567899999999999999999999999999976 333333 334669999999999999999999999998
Q ss_pred CCCCeEEEEEeecC
Q 023143 103 QSGSVLHIELARSN 116 (286)
Q Consensus 103 ~~g~~l~v~~~~~~ 116 (286)
|+.|+|++++..
T Consensus 119 --g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 --GKPMVVQFARSA 130 (143)
T ss_dssp --TEECEEEECCCS
T ss_pred --CcEEEEEECCCC
Confidence 999999999764
No 296
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=118.95 Aligned_cols=75 Identities=5% Similarity=0.012 Sum_probs=67.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
...+|||+|||.++|+++|+++|+.| .|..|+|+. ++++|||||+|.+.++|.+|| .|||..|+ |+.|.|..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V~~ 89 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVEVSP 89 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEEEE
Confidence 36899999999999999999999999 899999876 567889999999999999999 79999999 55999988
Q ss_pred ecc
Q 023143 279 ARS 281 (286)
Q Consensus 279 ak~ 281 (286)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 754
No 297
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=7e-17 Score=120.14 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++. ++..|. |+.|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~ 99 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID---GRVVE 99 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET---TEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC---CEEEE
Confidence 34569999999999999999999999999999999985422 2244999999999999999998 999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|+++.....
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999876543
No 298
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=116.08 Aligned_cols=76 Identities=13% Similarity=0.112 Sum_probs=67.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..++|||+|||.++|+++|+++|++||.+ .|+++. ++++|||||+|.+.++|.+|| .+|+..|. |+.|+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V~~ 88 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQ---HRYVELFL 88 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSS---SSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeEC---CcEEEEEE
Confidence 47899999999999999999999999955 888876 456789999999999999999 57999998 55999998
Q ss_pred eccc
Q 023143 279 ARSK 282 (286)
Q Consensus 279 ak~~ 282 (286)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8754
No 299
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-17 Score=119.91 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec--CCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...+.++|||+|||.++++++|+++|+.||.|.. .+... ....++||||+|.+.++|.+|++ |+|..|. |+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l 87 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEI 87 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT---TBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC---CcEE
Confidence 3456789999999999999999999999999876 22211 11123399999999999999999 9999998 9999
Q ss_pred EEEEeecC
Q 023143 109 HIELARSN 116 (286)
Q Consensus 109 ~v~~~~~~ 116 (286)
+|++++..
T Consensus 88 ~V~~a~~~ 95 (101)
T 1fj7_A 88 KLEKPKGR 95 (101)
T ss_dssp EEECCSCC
T ss_pred EEEEcCCC
Confidence 99998754
No 300
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=9.7e-17 Score=122.39 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC---ccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCC
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPG---FDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (286)
+...+.++|||+|||+++|+++|+++|+.||. |..|+|..+..+ .++||||+|.+.++|.+|++ ++|..|. |
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---g 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG---H 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---C
Confidence 34567889999999999999999999999999 889998865443 34599999999999999999 9999998 9
Q ss_pred CeEEEEEeec
Q 023143 106 SVLHIELARS 115 (286)
Q Consensus 106 ~~l~v~~~~~ 115 (286)
|.|.|.++..
T Consensus 115 r~i~V~~a~~ 124 (136)
T 2hgl_A 115 RYIEVFKSHR 124 (136)
T ss_dssp SEEEEEECCH
T ss_pred EEEEEEECCh
Confidence 9999998754
No 301
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=122.70 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...+.++|||+|||..+++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..|. |+.|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 135 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTI 135 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET---TEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC---CEEE
Confidence 35578999999999999999999999999999999887442 223449999999999999999999999998 9999
Q ss_pred EEEEe
Q 023143 109 HIELA 113 (286)
Q Consensus 109 ~v~~~ 113 (286)
+|+++
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99875
No 302
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=2.9e-17 Score=125.53 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..++++|||+|||.++|+++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..|. |+.|+
T Consensus 44 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l~ 120 (135)
T 2lea_A 44 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GRELR 120 (135)
T ss_dssp GGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS---SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 4567899999999999999999999999999999887432 223449999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023143 110 IELARSNS 117 (286)
Q Consensus 110 v~~~~~~~ 117 (286)
|+|++...
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99997643
No 303
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2e-18 Score=128.59 Aligned_cols=81 Identities=14% Similarity=0.227 Sum_probs=73.0
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceE--------EEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--------LKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~--------v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
+++++|||+|||.++++++|+++|++||.|.. |+++. +.+++||||+|.+.++|.+|++.|||..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 83 (116)
Confidence 46899999999999999999999999999998 77765 456789999999999999999999999999
Q ss_pred CCCCcEEEEEeccccC
Q 023143 269 SDRGGMHIEYARSKMR 284 (286)
Q Consensus 269 ~~g~~l~V~~ak~~~~ 284 (286)
|+.|+|+||+.+..
T Consensus 84 --g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 --GNPIKVSFATRRAD 97 (116)
Confidence 55999999987643
No 304
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.7e-17 Score=117.65 Aligned_cols=78 Identities=15% Similarity=0.290 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
++|||+|||.++++++|+++|+.||.|..|++..+. ...++||||+|.+.+ |.+|++.|||..+. |+.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~---g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM---GRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS---SSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC---CeEEEEEEc
Confidence 689999999999999999999999999999988442 223569999999999 99999999999998 999999998
Q ss_pred ecCC
Q 023143 114 RSNS 117 (286)
Q Consensus 114 ~~~~ 117 (286)
....
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 7643
No 305
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=8.1e-17 Score=132.70 Aligned_cols=79 Identities=18% Similarity=0.339 Sum_probs=71.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
.|.++|||+|||.++|+++|+++|++||.|.+|++++ ++++|||||+|.+.++|.+|++.+||..+. |+.|++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~---g~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK---GKPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC---Cccccc
Confidence 3688999999999999999999999999999999987 456789999999999999999999999999 559999
Q ss_pred EEeccc
Q 023143 277 EYARSK 282 (286)
Q Consensus 277 ~~ak~~ 282 (286)
.++...
T Consensus 90 ~~~~~~ 95 (213)
T 4f02_A 90 MWSQRD 95 (213)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 998754
No 306
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.2e-17 Score=111.62 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=65.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.++ ..+. |+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~---g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD---SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS---SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC---CEEEEEEec
Confidence 4799999999999999999999999999999884422 224599999999999999999999 8888 999999986
No 307
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=2.2e-16 Score=124.84 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..++++|||+|||..+++++|+++|+.||.|..|.|...... .++||||+|.+.++|.+|++.|||..|. |+.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 456889999999999999999999999999999999854222 3459999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023143 110 IELARSNSR 118 (286)
Q Consensus 110 v~~~~~~~~ 118 (286)
|.|+.....
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999986543
No 308
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=3.4e-17 Score=112.03 Aligned_cols=71 Identities=17% Similarity=0.323 Sum_probs=64.8
Q ss_pred EEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEe
Q 023143 205 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 279 (286)
Q Consensus 205 ~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~a 279 (286)
+|||+|||.++++++|+++|++||.|..+.+.. +.++|||||+|.+.++|.+|++. +|..+. |+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG---LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT---TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC---CEEEEEEEC
Confidence 599999999999999999999999999999876 45678999999999999999986 899998 559999886
No 309
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=7e-17 Score=119.99 Aligned_cols=75 Identities=19% Similarity=0.357 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe----
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV---- 107 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~---- 107 (286)
.....+|||+|||+++++++|+++|+.||.|..|.|..+ + ||||+|.+.++|.+||+.|||..|. |+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g---~afV~f~~~~~a~~Ai~~l~g~~~~---gr~~~~~ 84 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--G---TGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETA 84 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--S---EEEEEESSHHHHHHHHHHHTTCBCC---CTTSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--C---EEEEEECCHHHHHHHHHHhCCCEEC---CcEeeeE
Confidence 345789999999999999999999999999999988743 3 9999999999999999999999998 988
Q ss_pred -EEEEEee
Q 023143 108 -LHIELAR 114 (286)
Q Consensus 108 -l~v~~~~ 114 (286)
++|....
T Consensus 85 ~i~v~~~~ 92 (115)
T 3beg_B 85 YIRVKVDG 92 (115)
T ss_dssp BCEEEECC
T ss_pred EEEeccCC
Confidence 5555443
No 310
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=1e-16 Score=119.05 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=65.2
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc-----EEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG-----MHI 276 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~-----l~V 276 (286)
...+|||+|||.++++++|+++|++||.|..|.++.. +||||+|.+.++|.+||+.|||..|.+ +. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g---r~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRS---HEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCC---TTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECC---cEeeeEEEEe
Confidence 3788999999999999999999999999999999876 899999999999999999999999994 47 666
Q ss_pred EEecc
Q 023143 277 EYARS 281 (286)
Q Consensus 277 ~~ak~ 281 (286)
..++.
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 66544
No 311
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=114.31 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..+.++|||+|||+++|+++|+++|+.||.+ .|+|..+..+ .++||||+|.+.++|.+|++ +++..|. |+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ---HRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEEE
Confidence 3457899999999999999999999999955 8888865432 34599999999999999995 7999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
.++...
T Consensus 87 ~~~~~~ 92 (102)
T 1wez_A 87 FLNSTA 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 987643
No 312
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=2.4e-16 Score=114.88 Aligned_cols=78 Identities=18% Similarity=0.132 Sum_probs=68.9
Q ss_pred CCccEEEEccCCC-----CCCHHHHHHHHhcCCCceEEEEeec-----CCccEEEEEECCHHHHHHHHHhcCCCccCCCC
Q 023143 201 QPCSTLFIANLGP-----NCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 270 (286)
Q Consensus 201 ~~~~~L~v~NL~~-----~~te~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~ 270 (286)
.++++|+|+||.. .-++++|+++|++||.|.+|.+... .++|||||+|.+.++|.+|++.|||..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 3699999999973 3478999999999999999999863 56899999999999999999999999998
Q ss_pred CCcEEEEEecc
Q 023143 271 RGGMHIEYARS 281 (286)
Q Consensus 271 g~~l~V~~ak~ 281 (286)
|+.|+|+|+..
T Consensus 83 Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 GRVVKACFYNL 93 (105)
T ss_dssp TEECEEEECCH
T ss_pred CcEEEEEEcCH
Confidence 66999999864
No 313
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=119.34 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec-CCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-GRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||+++|+++|+++|+.||.|..+.++.. ..+ .++||||+|.+.++|.+|++ |||..|. |+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG---NRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST---TSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEE
Confidence 456789999999999999999999999999977444432 222 35599999999999999999 9999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|.++...
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998653
No 314
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=117.27 Aligned_cols=81 Identities=11% Similarity=0.169 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCc-cEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGF-DFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||+++|+++|+++|+.||.| ..|+|..+..+ .++||||+|.+.++|.+|++. ++..|. |+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN---GREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET---TEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC---CeEEE
Confidence 4567899999999999999999999999999 88988754322 344999999999999999987 999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|.++...
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998753
No 315
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=4.5e-16 Score=116.53 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=70.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++++|||+|| ++++++|+++|+.||.|..|.+. ..++ ||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg---~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRN---CAFVTYEKMESADQAVAELNGTQVE---SVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTT---EEEEECSSHHHHHHHHHHHTTCBCS---SCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 3457899999996 79999999999999999999886 4555 9999999999999999999999998 999999
Q ss_pred EEeecCC
Q 023143 111 ELARSNS 117 (286)
Q Consensus 111 ~~~~~~~ 117 (286)
.|++...
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9987653
No 316
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=1.4e-16 Score=132.35 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=70.6
Q ss_pred CCCccEEEEccCCCCC---------CHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCC--
Q 023143 200 VQPCSTLFIANLGPNC---------TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS-- 268 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~~---------te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~-- 268 (286)
...+++|||+||+..+ ++++|+++|++||.|.+|+++..+ |||||+|.+.++|..|+++|||..|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k--G~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK--NCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC--CEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4468999999999998 799999999999999999998754 999999999999999999999999910
Q ss_pred -------CCCCcEEEEEecccc
Q 023143 269 -------SDRGGMHIEYARSKM 283 (286)
Q Consensus 269 -------~~g~~l~V~~ak~~~ 283 (286)
.+|+.|.|.||+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 026699999998753
No 317
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=7.9e-17 Score=117.01 Aligned_cols=77 Identities=14% Similarity=0.175 Sum_probs=69.7
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
++++|||+|||.++++++|+++|++||.|..|+++. +.++|||||+|.+.++|.+|++ +|..+. |+.|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~---g~~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH---GKKLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET---TEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC---CEEEEEEE
Confidence 478999999999999999999999999999999988 3456899999999999999999 999998 55999999
Q ss_pred ecccc
Q 023143 279 ARSKM 283 (286)
Q Consensus 279 ak~~~ 283 (286)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87654
No 318
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3e-16 Score=123.63 Aligned_cols=79 Identities=18% Similarity=0.296 Sum_probs=71.7
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
++++|||+|||.++++++|+++|+.||.|..+++... .++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 77 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ---TKTIKVS 77 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC---CceEEEE
Confidence 3689999999999999999999999999999999873 35689999999999999999999999999 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
|++...
T Consensus 78 ~~~~~~ 83 (167)
T 1fxl_A 78 YARPSS 83 (167)
T ss_dssp ECCCCC
T ss_pred ecCCCc
Confidence 998653
No 319
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.1e-16 Score=113.95 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCccEEEEccCCCCCC-----------HHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 201 QPCSTLFIANLGPNCT-----------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~t-----------e~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
.++++|+|+||..... +++|+++|++||.|..|.+....++|||||+|.+.++|.+|++.|||..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-- 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 4699999999954432 689999999999999998766667899999999999999999999999998
Q ss_pred CCCcEEEEEeccc
Q 023143 270 DRGGMHIEYARSK 282 (286)
Q Consensus 270 ~g~~l~V~~ak~~ 282 (286)
|+.|+|+|++.+
T Consensus 91 -gr~l~v~~a~~~ 102 (112)
T 2dit_A 91 -GRQITAQAWDGT 102 (112)
T ss_dssp -TEECEEEECCSC
T ss_pred -CcEEEEEEeCCC
Confidence 569999998764
No 320
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=2.6e-16 Score=124.26 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=72.2
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeec----CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
++++|||+|||.++++++|+++|++||.|.+++++.. .++|||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR---NKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC---CcEEEEE
Confidence 5789999999999999999999999999999998873 35689999999999999999999999998 5599999
Q ss_pred Eecccc
Q 023143 278 YARSKM 283 (286)
Q Consensus 278 ~ak~~~ 283 (286)
|++.+.
T Consensus 79 ~~~~~~ 84 (168)
T 1b7f_A 79 YARPGG 84 (168)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 998654
No 321
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.7e-16 Score=110.67 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=64.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcC----C-------CceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCC
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVY----P-------GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 270 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~----G-------~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~ 270 (286)
+.++|||+|||.++++++|+++|++| | .|.++++... ++||||+|.+.++|.+|+ .|||..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~--- 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ--- 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC---
Confidence 58999999999999999999999999 8 8999988866 499999999999999999 99999999
Q ss_pred CCcEEEE
Q 023143 271 RGGMHIE 277 (286)
Q Consensus 271 g~~l~V~ 277 (286)
|+.|+|+
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 5599886
No 322
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-16 Score=112.66 Aligned_cols=78 Identities=23% Similarity=0.296 Sum_probs=63.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
.++++|||+|||.++++++|+++|+.||.|..|++..+.++ ||||+|.+.++|.+| ++..+ ...|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g---~afV~f~~~~~a~~~----~~~~~-~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRA---FAFVTFADDQIAQSL----CGEDL-IIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCS---CCEEECSCHHHHHHT----TTCEE-EETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCC---EEEEEECCHHHHHHH----hcCCc-eeCCEEEEEEe
Confidence 46899999999999999999999999999999998744444 999999999999754 44444 12288888888
Q ss_pred eecCCC
Q 023143 113 ARSNSR 118 (286)
Q Consensus 113 ~~~~~~ 118 (286)
+.....
T Consensus 75 a~~~~~ 80 (88)
T 1wf0_A 75 AEPKHN 80 (88)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 765433
No 323
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=3e-16 Score=130.57 Aligned_cols=80 Identities=6% Similarity=-0.015 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCC--CccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKP--GFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..++|||+|||+++|+++|+++|+.|| .|..|+|..+. ...++||||+|.+.++|.+||+.|||..|. |+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~---Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT---TBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC---CEEeE
Confidence 567899999999999999999999999 99999998653 223569999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|.+++..
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998643
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.6e-16 Score=110.72 Aligned_cols=72 Identities=19% Similarity=0.405 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcC----C-------CccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRK----P-------GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
.+.++|||+|||.++++++|+++|+.| | .|.++++. ..++ ||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg---~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN---FAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSS---EEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCc---EEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 468999999999999999999999999 8 88888877 3344 9999999999999999 99999998
Q ss_pred CCCCCeEEEEE
Q 023143 102 PQSGSVLHIEL 112 (286)
Q Consensus 102 ~~~g~~l~v~~ 112 (286)
|+.|+|+.
T Consensus 79 ---g~~l~V~r 86 (87)
T 2hzc_A 79 ---GQSLKIRR 86 (87)
T ss_dssp ---TEECEEEC
T ss_pred ---CeEEEEeC
Confidence 99999873
No 325
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=9.7e-16 Score=122.42 Aligned_cols=82 Identities=24% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC-CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..++++|||+|||..+++++|+++|+.||.|..|.|..... ..++||||+|.+.++|.+|++.|+|..|. |+.|+|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~---Gr~l~V 161 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMDI 161 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS---SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 45678999999999999999999999999999999985431 12449999999999999999999999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
+|+...
T Consensus 162 ~~a~~~ 167 (177)
T 2f3j_A 162 QLVASQ 167 (177)
T ss_dssp EEESSG
T ss_pred EEecCC
Confidence 998754
No 326
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=3.6e-16 Score=110.59 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=61.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
+..+|||+|||+++|+++|+++|+.||.|.+|++..+.+| ||||+|.+.++|.+ ++|..+ ...|+.+.|.++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srG---faFV~F~~~~~A~~----~~~~~~-~~~g~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRA---FAFVTFADDKVAQS----LCGEDL-IIKGISVHISNA 81 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCS---EEEEEESCHHHHHH----HTTCEE-EETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCC---EEEEEECCHHHHHH----HcCCCc-ccCCEEEEEEEc
Confidence 4788999999999999999999999999999998855455 99999999999983 566655 234788888887
Q ss_pred ecC
Q 023143 114 RSN 116 (286)
Q Consensus 114 ~~~ 116 (286)
...
T Consensus 82 ~~k 84 (89)
T 3d2w_A 82 EPK 84 (89)
T ss_dssp C--
T ss_pred CCC
Confidence 643
No 327
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=1.4e-15 Score=130.49 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++++|||+|||.++++++|+++|+.||.|..|++.... ++||||+|.+.++|.+|++.|||..|. .|+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKIT--QNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeC--CCCEEEE
Confidence 34567999999999999999999999999999999998333 349999999999999999999999884 3899999
Q ss_pred EEee
Q 023143 111 ELAR 114 (286)
Q Consensus 111 ~~~~ 114 (286)
+|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9985
No 328
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=111.30 Aligned_cols=77 Identities=25% Similarity=0.242 Sum_probs=65.4
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
++++|||+|||.++++++|+++|++||.|..|++... ++|||||+|.+.++|++ +++..+... |+.|+|.|++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~-g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIK-GISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEET-TEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeC-CEEEEEEecCC
Confidence 5899999999999999999999999999999999865 67999999999999975 455555333 66999999887
Q ss_pred ccC
Q 023143 282 KMR 284 (286)
Q Consensus 282 ~~~ 284 (286)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 329
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=114.80 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..+..+|||+|||+++|+++|+++|+.| .|..|+|..+..+ .++||||+|.+.++|.+|+ .+|+..|. ||.|.|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V 87 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVEV 87 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEE
Confidence 3456899999999999999999999999 8999998854332 2459999999999999999 69999998 999999
Q ss_pred EEeec
Q 023143 111 ELARS 115 (286)
Q Consensus 111 ~~~~~ 115 (286)
..+..
T Consensus 88 ~~a~~ 92 (109)
T 2dnn_A 88 SPATE 92 (109)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 87653
No 330
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.2e-16 Score=122.18 Aligned_cols=76 Identities=13% Similarity=0.094 Sum_probs=68.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..++|||+|||.++|+++|+++|++|| +..|+++. ++++|||||+|.+.++|.+|| .+|+..|. |+.|+|.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~---gR~i~V~~ 119 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ---HRYIELFL 119 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS---SCCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC---CEEEEEEE
Confidence 478999999999999999999999999 66898876 556889999999999999999 88999999 55999998
Q ss_pred eccc
Q 023143 279 ARSK 282 (286)
Q Consensus 279 ak~~ 282 (286)
+..+
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 331
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-16 Score=118.29 Aligned_cols=76 Identities=13% Similarity=0.018 Sum_probs=67.0
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCc----eEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGF----NMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 274 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v----~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l 274 (286)
...+|||+|||+++|+++|+++|++||.| ..|+|+. ++++|||||+|.+.++|.+||+. ||..|+ |+.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~---gR~i 97 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG---KRYI 97 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS---SCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC---CeEE
Confidence 47899999999999999999999999975 6788876 55678999999999999999987 999998 5599
Q ss_pred EEEEecc
Q 023143 275 HIEYARS 281 (286)
Q Consensus 275 ~V~~ak~ 281 (286)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 332
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=115.67 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=70.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCC---ccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPG---FDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
...+.++|||+|||+++|+++|+++|+.||. |..|+|..+..+ .++||||+|.+.++|.+|++ ++|..+. |+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG---QR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS---SS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC---Ce
Confidence 3457889999999999999999999999988 889988744322 34599999999999999999 9999998 99
Q ss_pred eEEEEEeec
Q 023143 107 VLHIELARS 115 (286)
Q Consensus 107 ~l~v~~~~~ 115 (286)
.|.|.++..
T Consensus 83 ~i~V~~a~~ 91 (107)
T 2lmi_A 83 YVEVYEINN 91 (107)
T ss_dssp CCCCEECCH
T ss_pred EEEEEECCH
Confidence 999998764
No 333
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1.3e-15 Score=120.88 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCC-eeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..+.++|||+|||..+|+++|+++|+.||.|..|++.....+. ++||||+|.+.++|.+|++.|||..+..+++++|+|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 3467899999999999999999999999999999998554332 559999999999999999999999886455799999
Q ss_pred EEee
Q 023143 111 ELAR 114 (286)
Q Consensus 111 ~~~~ 114 (286)
.|+.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 334
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.63 E-value=5.1e-16 Score=129.32 Aligned_cols=79 Identities=23% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCCccEEEEccCCC-CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 200 VQPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 200 ~~~~~~L~v~NL~~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
.+++++|||+|||. ++++++|+++|+.||.|..|++.... +|||||+|.+.++|.+|++.|||..+. |+.|+|+|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLH---GKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCS---SSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEEE
Confidence 34689999999999 99999999999999999999999865 689999999999999999999999998 55999999
Q ss_pred eccc
Q 023143 279 ARSK 282 (286)
Q Consensus 279 ak~~ 282 (286)
++.+
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9865
No 335
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=6e-16 Score=116.21 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=66.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCce--EEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFN--MLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 276 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~--~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V 276 (286)
..++|||+|||+++|+++|+++|+.| .|. .|+++. ++++|||||+|.+.++|.+||+. ++..|+ |+.|.|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~---gR~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG---HRYIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT---TBCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC---CEEEEE
Confidence 47889999999999999999999999 676 888876 56789999999999999999985 778888 559999
Q ss_pred EEecc
Q 023143 277 EYARS 281 (286)
Q Consensus 277 ~~ak~ 281 (286)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 336
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=6.2e-16 Score=128.36 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCcc--
Q 023143 32 DNGINTLFVSGLPDDV---------RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF-- 100 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~-- 100 (286)
..++++|||+||+..+ ++++|+++|+.||.|.+|+|. ..++ ||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG---~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKN---CGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGT---EEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCC---EEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 4578999999999998 799999999999999999988 4455 999999999999999999999999
Q ss_pred ----------CCCCCCeEEEEEeecCC
Q 023143 101 ----------DPQSGSVLHIELARSNS 117 (286)
Q Consensus 101 ----------~~~~g~~l~v~~~~~~~ 117 (286)
. |+.|.|.|++...
T Consensus 207 ~~~~e~~~~~~---gr~L~V~wA~~~p 230 (240)
T 3u1l_A 207 PSDKEWDDRRE---GTGLLVKWANEDP 230 (240)
T ss_dssp TTSTTGGGGGG---SCCCEEEECC---
T ss_pred cccccccccCC---CCEEEEEEccCCC
Confidence 6 9999999997643
No 337
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.7e-16 Score=108.43 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=63.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
+|||+|||.++++++|+++|+.||.|..|.+..+.. ..++||||+|.+.++|.+|++. ++..+. |+.|.|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG---LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT---TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC---CEEEEEEEC
Confidence 599999999999999999999999999998874322 2345999999999999999985 888898 999999875
No 338
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-17 Score=122.35 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccE--------EEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF--------CQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
..++++|||+|||.++++++|+++|+.||.|.. |++..... ..++||||+|.+.++|.+|++.|||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346889999999999999999999999999988 77764321 23459999999999999999999999998
Q ss_pred CCCCCeEEEEEeecCC
Q 023143 102 PQSGSVLHIELARSNS 117 (286)
Q Consensus 102 ~~~g~~l~v~~~~~~~ 117 (286)
|+.|+|++++...
T Consensus 84 ---g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 ---GNPIKVSFATRRA 96 (116)
Confidence 9999999987654
No 339
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=114.46 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCc----cEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGF----DFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (286)
.+..+|||+|||+++|+++|+++|+.||.| ..|+|..+..+ .++||||+|.+.++|.+|++. ++..|. ||.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~---gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG---KRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC---CeE
Confidence 467899999999999999999999999985 68888755333 355999999999999999986 999998 999
Q ss_pred EEEEEee
Q 023143 108 LHIELAR 114 (286)
Q Consensus 108 l~v~~~~ 114 (286)
|.|..+.
T Consensus 97 i~V~~a~ 103 (123)
T 2dha_A 97 IELFRST 103 (123)
T ss_dssp ECCEEEC
T ss_pred EEEEECC
Confidence 8888764
No 340
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=7e-16 Score=111.95 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
..++++|||+|||.++++++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++ +|..+. |+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~---g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH---GKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET---TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC---CEEEEE
Confidence 345789999999999999999999999999999999855322 34599999999999999998 999998 999999
Q ss_pred EEeecCC
Q 023143 111 ELARSNS 117 (286)
Q Consensus 111 ~~~~~~~ 117 (286)
.++....
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9987543
No 341
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=3.1e-15 Score=118.56 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 168 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLLV 168 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 347899999999999999999999999999999998553 223559999999999999999999999998 999999
Q ss_pred EEe
Q 023143 111 ELA 113 (286)
Q Consensus 111 ~~~ 113 (286)
+|+
T Consensus 169 ~~A 171 (172)
T 2g4b_A 169 QRA 171 (172)
T ss_dssp EEC
T ss_pred EeC
Confidence 987
No 342
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.6e-15 Score=116.65 Aligned_cols=81 Identities=21% Similarity=0.383 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
...+.++|||+|||..+++++|+++|+.||.|..+.+..... ..++||||+|.+.++|.+|++.|||..+. |+.|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i 159 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPL 159 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEE
Confidence 345678999999999999999999999999999999985522 23459999999999999999999999998 9999
Q ss_pred EEEEee
Q 023143 109 HIELAR 114 (286)
Q Consensus 109 ~v~~~~ 114 (286)
+|.|++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 343
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=8.5e-15 Score=118.71 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||..+++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 187 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLL 187 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 4677999999999999999999999999999999998553 223559999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|.++...
T Consensus 188 v~~a~~~ 194 (198)
T 2yh0_A 188 VQRASVG 194 (198)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 9998764
No 344
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=111.58 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=60.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC-----CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-----GNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~-----~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
+....+++|||+|||+++++++|+++|+.||.|. +.+..... ..++||||+|.+.++|.+|++.|++ +.
T Consensus 3 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~--- 76 (114)
T 2dnl_A 3 SGSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED--- 76 (114)
T ss_dssp CSSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET---
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC---
Confidence 3455689999999999999999999999999998 66653321 2245999999999999999999842 44
Q ss_pred CCeEEEE
Q 023143 105 GSVLHIE 111 (286)
Q Consensus 105 g~~l~v~ 111 (286)
|+.+.+.
T Consensus 77 G~~~~~~ 83 (114)
T 2dnl_A 77 GKLYLCV 83 (114)
T ss_dssp TEEEEEE
T ss_pred CcEEEec
Confidence 5555554
No 345
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=123.16 Aligned_cols=76 Identities=24% Similarity=0.324 Sum_probs=71.2
Q ss_pred ccEEEEccCCC-CCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEecc
Q 023143 203 CSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 281 (286)
Q Consensus 203 ~~~L~v~NL~~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak~ 281 (286)
+++|||+|||. ++++++|+++|++||.|..|++.... +|||||+|.+.++|.+|++.|||..+. |+.|+|+|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLH---GKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCS---SCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeec---CeEEEEEEecC
Confidence 78999999999 99999999999999999999998865 689999999999999999999999998 55999999986
Q ss_pred c
Q 023143 282 K 282 (286)
Q Consensus 282 ~ 282 (286)
+
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 346
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=3.6e-15 Score=135.23 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|.... ...++||||+|.+.++|.+||+.|||..|. |+.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~---gr~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID---GRRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC---CEEEE
Confidence 4566899999999999999999999999999999987542 223459999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023143 110 IELARSN 116 (286)
Q Consensus 110 v~~~~~~ 116 (286)
|+|+...
T Consensus 176 V~~a~~~ 182 (437)
T 3pgw_S 176 VDVERGR 182 (437)
T ss_pred EEEeCCC
Confidence 9999754
No 347
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.59 E-value=2.9e-15 Score=109.18 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=67.6
Q ss_pred CCccEEEEccCC--CCCC--------HHHHHHHHhcCCCceEEEEeec------CCccEEEEEECCHHHHHHHHHhcCCC
Q 023143 201 QPCSTLFIANLG--PNCT--------EDELKQTLSVYPGFNMLKMRAR------GGMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 201 ~~~~~L~v~NL~--~~~t--------e~~L~~~F~~~G~v~~v~~~~~------~~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
.|+++|.|+|+- ..+. +++|+++|++||.|.+|++.+. .++|+|||+|.+.++|.+|+++|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 479999999994 3333 3799999999999999999863 46799999999999999999999999
Q ss_pred ccCCCCCCcEEEEEecc
Q 023143 265 TLPSSDRGGMHIEYARS 281 (286)
Q Consensus 265 ~~~~~~g~~l~V~~ak~ 281 (286)
.+. |+.|+|+|+..
T Consensus 83 ~f~---GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFA---NRVVVTKYCDP 96 (105)
T ss_dssp EET---TEECEEEEECH
T ss_pred EeC---CCEEEEEEeCH
Confidence 999 66999999753
No 348
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.59 E-value=3.3e-15 Score=120.94 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=69.6
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
++++|||+|||.++|+++|+++|+.||.|.+|+++. +.++|||||+|.+.++|.+|++. +|..+. |+.|.|.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~---g~~l~v~ 87 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD---GRVVEPK 87 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET---TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC---CEEeeee
Confidence 589999999999999999999999999999999987 34578999999999999999987 899998 5599999
Q ss_pred Eeccc
Q 023143 278 YARSK 282 (286)
Q Consensus 278 ~ak~~ 282 (286)
++..+
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98764
No 349
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.59 E-value=5.7e-16 Score=118.50 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
....++|||+|||+++|+++|+++|+.|| |..|+|..+..+ .++||||+|.+.++|.+|+ .+++..|. |+.|.|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~---gR~i~V 117 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ---HRYIEL 117 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS---SCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC---CEEEEE
Confidence 34568999999999999999999999999 668888754332 2449999999999999999 78999998 999999
Q ss_pred EEeecC
Q 023143 111 ELARSN 116 (286)
Q Consensus 111 ~~~~~~ 116 (286)
.++...
T Consensus 118 ~~a~~~ 123 (139)
T 2hgn_A 118 FLNSTT 123 (139)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 887643
No 350
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=7.3e-15 Score=106.98 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=69.5
Q ss_pred CCCCeEEEcCCCC-----CCCHHHHHHHhhcCCCccEEEEEecC---CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCC
Q 023143 33 NGINTLFVSGLPD-----DVRAREIHNLFRRKPGFDFCQLKYTG---RGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (286)
Q Consensus 33 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~---~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (286)
.++++|+|+||.. +-++++|+++|++||.|.+|.|.... ...++||||+|.+.++|.+|++.|||..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 4689999999973 23789999999999999999998542 234669999999999999999999999998
Q ss_pred CCeEEEEEeecC
Q 023143 105 GSVLHIELARSN 116 (286)
Q Consensus 105 g~~l~v~~~~~~ 116 (286)
||.|++.++...
T Consensus 83 Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 83 GRVVKACFYNLD 94 (105)
T ss_dssp TEECEEEECCHH
T ss_pred CcEEEEEEcCHH
Confidence 999999998753
No 351
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=2.1e-15 Score=113.19 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCcc--EEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFD--FCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
..+.++|||+|||+++|+++|+++|+.| .|. .|+|..+..+ .++||||+|.+.++|.+|++. ++..|. ||.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~---gR~I 113 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG---HRYI 113 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT---TBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC---CEEE
Confidence 4567899999999999999999999999 576 7887744332 245999999999999999985 778887 9999
Q ss_pred EEEEeec
Q 023143 109 HIELARS 115 (286)
Q Consensus 109 ~v~~~~~ 115 (286)
.|..+..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987753
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=110.87 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=56.2
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee-------cCCccEEEEEECCHHHHHHHHHhc---CCCc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-------RGGMPVAFADFEEVEQASIAMEGL---QDST 265 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~-------~~~~~~afV~f~~~e~A~~Al~~l---ng~~ 265 (286)
.+++|||+|||.++++++|+++|++||.|. +.++. ++++|||||+|.+.++|.+||+.| +|..
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~ 79 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKL 79 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcE
Confidence 478999999999999999999999999999 76655 366899999999999999999998 5553
No 353
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=2.6e-15 Score=111.06 Aligned_cols=76 Identities=8% Similarity=0.073 Sum_probs=66.4
Q ss_pred cEEEEccC----CCCCCHHHHHHHHhcCCCceEEEEee----cCCccEEEEEECC----HHH----HHHHHH--hcCCCc
Q 023143 204 STLFIANL----GPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEE----VEQ----ASIAME--GLQDST 265 (286)
Q Consensus 204 ~~L~v~NL----~~~~te~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~----~e~----A~~Al~--~lng~~ 265 (286)
+.|||+|| |+++++++|+++|++||.|.+|.++. +.++|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 99999999999999999999999988 5678899999996 433 888988 899999
Q ss_pred cCCCCCCcEEEEEeccc
Q 023143 266 LPSSDRGGMHIEYARSK 282 (286)
Q Consensus 266 ~~~~~g~~l~V~~ak~~ 282 (286)
|. |+.|+|.+-+..
T Consensus 83 I~---Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IM---GFKFEVILNKHS 96 (136)
T ss_dssp ET---TEEEEEEECCTT
T ss_pred ec---CcEEEEEECccc
Confidence 99 669999987653
No 354
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.58 E-value=1.3e-14 Score=119.18 Aligned_cols=82 Identities=16% Similarity=0.274 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCC--CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
...++|||+|||.++++++|+++|+.||.|..|++..... ..++||||+|.+.++|.+|++.|||..|. |+.|+|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG---GQYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS---SSBCEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC---CcEEEE
Confidence 4568999999999999999999999999999999985532 23559999999999999999999999998 999999
Q ss_pred EEeecCC
Q 023143 111 ELARSNS 117 (286)
Q Consensus 111 ~~~~~~~ 117 (286)
.|+....
T Consensus 200 ~~a~~~~ 206 (216)
T 2qfj_A 200 GKAVTPP 206 (216)
T ss_dssp EECSSCS
T ss_pred EEecCCC
Confidence 9987653
No 355
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=4.6e-15 Score=120.20 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=69.3
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEE
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 278 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ 278 (286)
..++|||+|||.++|+++|+++|++||.|..|++.. +.++|||||+|.+.++|.+|++.++ ..+. |+.|.|.|
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~---Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK---ETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET---TEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC---CEEEEEEE
Confidence 378999999999999999999999999999999987 5567899999999999999998775 4888 66999999
Q ss_pred ecccc
Q 023143 279 ARSKM 283 (286)
Q Consensus 279 ak~~~ 283 (286)
+++-.
T Consensus 184 ~~~y~ 188 (193)
T 2voo_A 184 KDDYF 188 (193)
T ss_dssp TTTC-
T ss_pred hHHHH
Confidence 87643
No 356
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.57 E-value=6.2e-15 Score=128.72 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=68.7
Q ss_pred CCCccEEEEcc--CCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCC--cEE
Q 023143 200 VQPCSTLFIAN--LGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG--GMH 275 (286)
Q Consensus 200 ~~~~~~L~v~N--L~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~--~l~ 275 (286)
.+|+++|||+| |+..+||++|+++|++||.|..|.+.. +||||||+|.+.++|.+|+++|||..+.+..|+ .|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 45799999999 578999999999999999999998876 569999999999999999999999999432244 688
Q ss_pred EEEec
Q 023143 276 IEYAR 280 (286)
Q Consensus 276 V~~ak 280 (286)
|.|++
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 89985
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.7e-14 Score=106.49 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 33 NGINTLFVSGLPDDVR-----------AREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
.++++|+|+||..... +++|+++|++||.|..|.|. +. ..++||||+|.+.++|.+|++.|||..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~-~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR-HPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT-CTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC-CCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4689999999954332 68999999999999999663 32 24559999999999999999999999998
Q ss_pred CCCCCeEEEEEeecCCC
Q 023143 102 PQSGSVLHIELARSNSR 118 (286)
Q Consensus 102 ~~~g~~l~v~~~~~~~~ 118 (286)
|++|+|.++.....
T Consensus 91 ---gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 ---GRQITAQAWDGTTD 104 (112)
T ss_dssp ---TEECEEEECCSCCC
T ss_pred ---CcEEEEEEeCCCCC
Confidence 99999999876443
No 358
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.56 E-value=1.3e-14 Score=123.10 Aligned_cols=76 Identities=22% Similarity=0.313 Sum_probs=70.4
Q ss_pred CCccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEEEec
Q 023143 201 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 280 (286)
Q Consensus 201 ~~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~~ak 280 (286)
.++++|||+|||.++|+++|+++|+.||.|..|++.+. +|||||+|.+.++|.+|+..|||..+. |+.|+|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTILK---SRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEET---TEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcEEC---CceeEeeecc
Confidence 45889999999999999999999999999999999765 499999999999999999999999998 5599999987
Q ss_pred c
Q 023143 281 S 281 (286)
Q Consensus 281 ~ 281 (286)
.
T Consensus 95 ~ 95 (261)
T 3sde_A 95 H 95 (261)
T ss_dssp C
T ss_pred c
Confidence 5
No 359
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=7.8e-15 Score=115.66 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecC--CCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
+.++|||+|||.++++++|+++|+.||.|..|++.... ...++||||+|.+.++|.+|++ ++|..+. |+.|.|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK---DRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS---SSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC---CeEEEEe
Confidence 46789999999999999999999999999999987442 2345699999999999999998 8999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
|+..+
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98653
No 360
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=8.2e-15 Score=116.55 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEE
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (286)
..+.++|||+|||..+++++|+++|+.||.|..+ . .....++||||+|.+.++|.+|++.|+|..|. |+.|+|.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 169 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLY 169 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--C-SSSSCCSEEEEECSSHHHHHHHHHHHTEEEET---TEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--c-CCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 3467899999999999999999999999988766 2 22233459999999999999999999999998 9999999
Q ss_pred EeecC
Q 023143 112 LARSN 116 (286)
Q Consensus 112 ~~~~~ 116 (286)
|+..+
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 98653
No 361
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.6e-14 Score=106.76 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=66.6
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhcCCCccEEEEEecCCC--CeeEEEEEEcC----HHH----HHHHHH--HhCCCc
Q 023143 36 NTLFVSGL----PDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVN----HQT----AVAALH--ELNGVK 99 (286)
Q Consensus 36 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~v~i~~~~~~--~~~~aFV~F~~----~~~----A~~A~~--~l~g~~ 99 (286)
+.|||+|| |+.+++++|+++|+.||+|.+|++..+... .+|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 999999999999999999999999976544 34599999996 433 889988 789999
Q ss_pred cCCCCCCeEEEEEeecC
Q 023143 100 FDPQSGSVLHIELARSN 116 (286)
Q Consensus 100 ~~~~~g~~l~v~~~~~~ 116 (286)
|. |++|+|.+.+.+
T Consensus 83 I~---Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IM---GFKFEVILNKHS 96 (136)
T ss_dssp ET---TEEEEEEECCTT
T ss_pred ec---CcEEEEEECccc
Confidence 99 999999987644
No 362
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.53 E-value=2.6e-14 Score=105.39 Aligned_cols=77 Identities=10% Similarity=0.107 Sum_probs=67.9
Q ss_pred CccEEEEccCCCCCC----------HHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCC
Q 023143 202 PCSTLFIANLGPNCT----------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 271 (286)
Q Consensus 202 ~~~~L~v~NL~~~~t----------e~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g 271 (286)
++++|.|+||-..-. ++||++.|++||.|.+|.+.+..++|+|||+|.+.++|.+|++.|||..+. |
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~---G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA---G 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET---T
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 588999999974322 368899999999999999988777899999999999999999999999999 6
Q ss_pred CcEEEEEecc
Q 023143 272 GGMHIEYARS 281 (286)
Q Consensus 272 ~~l~V~~ak~ 281 (286)
+.|+|+|+..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 6999999853
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=99.67 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=63.9
Q ss_pred ccEEEEccCC-------CCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEE
Q 023143 203 CSTLFIANLG-------PNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 275 (286)
Q Consensus 203 ~~~L~v~NL~-------~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~ 275 (286)
..+|.|.-.. ..+++++|+++|++||.|..|.++ ++++|||||+|.+.++|.+|++.++| +. |++|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~---g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LV---DNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CS---SSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CC---CCeEE
Confidence 4567776443 468999999999999999999988 46789999999999999999999766 44 56999
Q ss_pred EEEeccccC
Q 023143 276 IEYARSKMR 284 (286)
Q Consensus 276 V~~ak~~~~ 284 (286)
|+|++.+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999988754
No 364
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=2.5e-14 Score=124.90 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=68.0
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC--
Q 023143 31 QDNGINTLFVSG--LPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS-- 106 (286)
Q Consensus 31 ~~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~-- 106 (286)
.+.++++|||+| |++.+|+++|+++|++||.|.+|.+. .+|+ ||||+|.+.++|++|++.|||..+....|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kg---faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKP---YSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCS---EEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 366799999999 58999999999999999999988775 3444 999999999999999999999999544566
Q ss_pred eEEEEEee
Q 023143 107 VLHIELAR 114 (286)
Q Consensus 107 ~l~v~~~~ 114 (286)
.+.+.|+.
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 56777763
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=2.6e-14 Score=106.12 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=66.9
Q ss_pred CccEEEEccCCC-----CCCHHHHHHHHhcCCCceEEEEeec--------CCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 202 PCSTLFIANLGP-----NCTEDELKQTLSVYPGFNMLKMRAR--------GGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 202 ~~~~L~v~NL~~-----~~te~~L~~~F~~~G~v~~v~~~~~--------~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
++++|+|+||-. +-.++||++.|++||.|.+|++... .++|+|||+|.+.++|.+|++.|||+.+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 699999999952 2247999999999999999999873 23589999999999999999999999999
Q ss_pred CCCCcEEEEEecc
Q 023143 269 SDRGGMHIEYARS 281 (286)
Q Consensus 269 ~~g~~l~V~~ak~ 281 (286)
|+.|+|+|+..
T Consensus 98 --GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 --GRKVVAEVYDQ 108 (118)
T ss_dssp --TEECEEEEECH
T ss_pred --CcEEEEEEcCh
Confidence 66999999753
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.50 E-value=6.7e-14 Score=113.31 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCC-CeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (286)
+.++|||+|||+++|+++|+++|+.||.|..|++.....+ .++||||+|.+.++|.+|++.++. .+. |+.|.|.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~---Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYK---ETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EET---TEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eEC---CEEEEEEE
Confidence 4689999999999999999999999999999998854322 356999999999999999986654 787 99999998
Q ss_pred eecC
Q 023143 113 ARSN 116 (286)
Q Consensus 113 ~~~~ 116 (286)
....
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 7653
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=4.6e-14 Score=102.73 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCC--CCCCC--------HHHHHHHhhcCCCccEEEEEecCC----CCeeEEEEEEcCHHHHHHHHHHhCC
Q 023143 32 DNGINTLFVSGL--PDDVR--------AREIHNLFRRKPGFDFCQLKYTGR----GNQVVAFATFVNHQTAVAALHELNG 97 (286)
Q Consensus 32 ~~~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~~~~----~~~~~aFV~F~~~~~A~~A~~~l~g 97 (286)
+.++++|.+.|+ |.++. +++|++.|++||.|.+|+|..... ..+++|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 346899999998 44443 369999999999999998874321 1245999999999999999999999
Q ss_pred CccCCCCCCeEEEEEeecC
Q 023143 98 VKFDPQSGSVLHIELARSN 116 (286)
Q Consensus 98 ~~~~~~~g~~l~v~~~~~~ 116 (286)
+.+. ||.|++.|+...
T Consensus 82 ~~f~---GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFA---NRVVVTKYCDPD 97 (105)
T ss_dssp CEET---TEECEEEEECHH
T ss_pred CEeC---CCEEEEEEeCHH
Confidence 9998 999999998643
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.47 E-value=1.3e-13 Score=102.24 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=67.3
Q ss_pred CCCeEEEcCCCC--CC---CHHHHHHHhhcCCCccEEEEEecCCC------CeeEEEEEEcCHHHHHHHHHHhCCCccCC
Q 023143 34 GINTLFVSGLPD--DV---RAREIHNLFRRKPGFDFCQLKYTGRG------NQVVAFATFVNHQTAVAALHELNGVKFDP 102 (286)
Q Consensus 34 ~~~~lfV~nLp~--~~---te~~L~~~F~~~G~i~~v~i~~~~~~------~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (286)
++++|+++|+-. ++ -+++|++.|++||.|.+|+|.....+ .+++|||+|.+.++|.+|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 689999999943 22 36899999999999999998854321 2369999999999999999999999998
Q ss_pred CCCCeEEEEEeec
Q 023143 103 QSGSVLHIELARS 115 (286)
Q Consensus 103 ~~g~~l~v~~~~~ 115 (286)
||.|++.|+..
T Consensus 98 --GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 --GRKVVAEVYDQ 108 (118)
T ss_dssp --TEECEEEEECH
T ss_pred --CcEEEEEEcCh
Confidence 99999999864
No 369
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.1e-14 Score=104.39 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=57.4
Q ss_pred ccCCCCCCHHHHHHHH------------hcCCCceEEEEeec---CCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCc
Q 023143 209 ANLGPNCTEDELKQTL------------SVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 273 (286)
Q Consensus 209 ~NL~~~~te~~L~~~F------------~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~ 273 (286)
.||+..+++++|++.| ++||.|.+|++... +++|||||+|.+.++|.+|++.|||..+. |+.
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~---Gr~ 97 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN---GQP 97 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET---TEE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC---CEE
Confidence 4455556666666555 99999999999873 46899999999999999999999999999 569
Q ss_pred EEEEEe
Q 023143 274 MHIEYA 279 (286)
Q Consensus 274 l~V~~a 279 (286)
|+|+|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999997
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.1e-12 Score=91.95 Aligned_cols=76 Identities=14% Similarity=0.064 Sum_probs=62.4
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 34 GINTLFVSGLP-------DDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 34 ~~~~lfV~nLp-------~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
..++|-|.-.. ..+++++|+++|++||.|..|.|.... ++||||+|.+.++|.+|++.+++ +. |+
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~---rGfaFVeF~~~~~A~~Ai~~~~~--~~---g~ 80 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKK---PGTAVVEFATVKAAELAVQNEVG--LV---DN 80 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSS---SSEEEEEESCHHHHHHHHHTCCB--CS---SS
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCC---CCEEEEEECCHHHHHHHHHhcCC--CC---CC
Confidence 35677777655 458999999999999999999987333 44999999999999999998555 45 99
Q ss_pred eEEEEEeecCC
Q 023143 107 VLHIELARSNS 117 (286)
Q Consensus 107 ~l~v~~~~~~~ 117 (286)
+|+|.|++...
T Consensus 81 ~l~V~~a~~~~ 91 (100)
T 2d9o_A 81 PLKISWLEGQP 91 (100)
T ss_dssp BCEEECSSCCC
T ss_pred eEEEEEccCCC
Confidence 99999987653
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.38 E-value=1.9e-13 Score=99.37 Aligned_cols=71 Identities=20% Similarity=0.242 Sum_probs=59.9
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCccEEEEEecCC-CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 40 VSGLPDDVRAREIHNLF------------RRKPGFDFCQLKYTGR-GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 40 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~~~~-~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
+.|||..+++++|++.| ++||.|.+|.|..... ..+|||||+|.+.++|.+|++.|||..+. ||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~---Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN---GQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET---TE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC---CE
Confidence 56788888888777666 9999999999984322 23669999999999999999999999998 99
Q ss_pred eEEEEEe
Q 023143 107 VLHIELA 113 (286)
Q Consensus 107 ~l~v~~~ 113 (286)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 372
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.1e-12 Score=88.62 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=65.8
Q ss_pred CCCCccEEEEccCC----CCCCH----HHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCC
Q 023143 199 GVQPCSTLFIANLG----PNCTE----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 270 (286)
Q Consensus 199 ~~~~~~~L~v~NL~----~~~te----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~ 270 (286)
..||.-||+|...+ .+... .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |||..+.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~--- 74 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL--- 74 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET---
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC---
Confidence 35788899998766 24444 7788999999999999999987 9999999999999998 9999999
Q ss_pred CCcEEEEEeccc
Q 023143 271 RGGMHIEYARSK 282 (286)
Q Consensus 271 g~~l~V~~ak~~ 282 (286)
|+.|+|++++..
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 569999998864
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.5e-12 Score=93.60 Aligned_cols=75 Identities=11% Similarity=0.017 Sum_probs=66.2
Q ss_pred CCCccEEEEccCCCC-CCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECC-HHHHHHHHHhcC--CCccCCCCCCcEE
Q 023143 200 VQPCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE-VEQASIAMEGLQ--DSTLPSSDRGGMH 275 (286)
Q Consensus 200 ~~~~~~L~v~NL~~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~-~e~A~~Al~~ln--g~~~~~~~g~~l~ 275 (286)
.+++..|||+||+.. +++++|+++|++||.|..|.+..+. ..|||+|.+ .++|..|++.|| |..|. +..+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~---g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQLR---NKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCTT---SSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEEe---CcEEE
Confidence 457999999999999 9999999999999999999998877 689999999 899999999995 66676 44777
Q ss_pred EEEe
Q 023143 276 IEYA 279 (286)
Q Consensus 276 V~~a 279 (286)
++..
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7654
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.32 E-value=7.8e-12 Score=92.04 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCCCCC----------HHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 34 GINTLFVSGLPDDVR----------AREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 34 ~~~~lfV~nLp~~~t----------e~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
++++|.+.|+=..-. +++|++.|++||.|.+|.|.... .+|+|||+|.+.++|.+|++.|||..+.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~-- 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFA-- 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEET--
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 488999999854322 34789999999999999886321 2459999999999999999999999998
Q ss_pred CCCeEEEEEeecC
Q 023143 104 SGSVLHIELARSN 116 (286)
Q Consensus 104 ~g~~l~v~~~~~~ 116 (286)
||.|++.|+...
T Consensus 82 -GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 -GKMITAAYVPLP 93 (114)
T ss_dssp -TEECEEEEECHH
T ss_pred -CEEEEEEEEcHH
Confidence 999999998643
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.5e-11 Score=90.71 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcC-HHHHHHHHHHhC--CCccCCCCCCe
Q 023143 32 DNGINTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVN-HQTAVAALHELN--GVKFDPQSGSV 107 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~-~~~A~~A~~~l~--g~~~~~~~g~~ 107 (286)
-..+..|||+||+.. +++++|+++|+.||.|..|.+. .++. .|||.|.+ .++|..|++.++ |..|. |..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~---g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAK---EGIILFKEKAKEALGKAKDANNGNLQLR---NKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTT---SSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCC---EEEEEECCChHHHHHHHHHhhcCCcEEe---CcE
Confidence 346899999999999 9999999999999999999887 3333 89999999 899999999995 67776 888
Q ss_pred EEEEEee
Q 023143 108 LHIELAR 114 (286)
Q Consensus 108 l~v~~~~ 114 (286)
+++++..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8888765
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=8.2e-11 Score=81.49 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCC----CCCH----HHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 32 DNGINTLFVSGLPD----DVRA----REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 32 ~~~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
+++..||+|.-++. .+-. .+|.+.|+.||.|..+++. .+ .+||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~---~d---~~fVtF~d~~sAlaAi~-mnG~~v~-- 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFV---ED---KMWVTFLEGSSALNVLS-LNGKELL-- 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEEC---SS---SEEEEESSHHHHHHGGG-GTTCEET--
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEe---cC---CEEEEECChHHHHHHHh-cCCeEeC--
Confidence 45678899998872 2323 5788999999999999988 34 49999999999999998 9999998
Q ss_pred CCCeEEEEEeec
Q 023143 104 SGSVLHIELARS 115 (286)
Q Consensus 104 ~g~~l~v~~~~~ 115 (286)
||.|+|+++..
T Consensus 75 -Gr~LkV~lkt~ 85 (91)
T 2dnr_A 75 -NRTITIALKSP 85 (91)
T ss_dssp -TEEEEEEECCC
T ss_pred -CeEEEEEeCCC
Confidence 99999998764
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3.4e-11 Score=83.80 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=63.5
Q ss_pred CCCCCccEEEEccCCCC-----CCH----HHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCC
Q 023143 198 GGVQPCSTLFIANLGPN-----CTE----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS 268 (286)
Q Consensus 198 ~~~~~~~~L~v~NL~~~-----~te----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~ 268 (286)
...||.-||+|..++.+ +.. .+|.+.|+.||.|..+++..++ +||+|.+.++|.+||+ |||..+.
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~- 83 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK- 83 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET-
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC-
Confidence 44678999999887633 333 6788999999999999999987 9999999999999998 9999999
Q ss_pred CCCCcEEEEEe
Q 023143 269 SDRGGMHIEYA 279 (286)
Q Consensus 269 ~~g~~l~V~~a 279 (286)
|+.|+|++-
T Consensus 84 --Gr~L~V~~k 92 (95)
T 1ufw_A 84 --GRAVKISGP 92 (95)
T ss_dssp --TEEEEEECC
T ss_pred --CeEEEEecc
Confidence 559999863
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.98 E-value=1.9e-09 Score=88.93 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=62.8
Q ss_pred ccEEEEccCC-----CCCCHHHHHHHHhcCCCceEEEEee--------cCCccEEEEEECCHHHHHHHHHhcCCCccCCC
Q 023143 203 CSTLFIANLG-----PNCTEDELKQTLSVYPGFNMLKMRA--------RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 269 (286)
Q Consensus 203 ~~~L~v~NL~-----~~~te~~L~~~F~~~G~v~~v~~~~--------~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~ 269 (286)
++.+.+.|+- ..-.+++|++.|++||.|.++.+.+ +.++|++||+|.+.++|.+|++.|||+.+.
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-- 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-- 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS--
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC--
Confidence 4455555554 3446789999999999999999975 156789999999999999999999999999
Q ss_pred CCCcEEEEEec
Q 023143 270 DRGGMHIEYAR 280 (286)
Q Consensus 270 ~g~~l~V~~ak 280 (286)
|+.|.++|+.
T Consensus 202 -gr~i~~~~~~ 211 (222)
T 3dxb_A 202 -GRKVVAEVYD 211 (222)
T ss_dssp -SSBCEEEECC
T ss_pred -CeEEEEEEcC
Confidence 6699999974
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.9e-09 Score=75.01 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=62.0
Q ss_pred CCCCCCeEEEcCCCCC------CCH---HHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccC
Q 023143 31 QDNGINTLFVSGLPDD------VRA---REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (286)
Q Consensus 31 ~~~~~~~lfV~nLp~~------~te---~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (286)
.+++..||+|.-++.. ..+ .+|.+.|+.||.|..+++. .. -+||+|.+.++|.+|++ |||..+.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v---~d---~~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN---QG---QMLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEE---TT---EEEEECSCSHHHHHHHH-GGGSEET
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEe---cC---cEEEEEcChHHHHHHHh-cCCeeeC
Confidence 4667889999998743 232 4688999999999999998 44 49999999999999998 9999998
Q ss_pred CCCCCeEEEEEe
Q 023143 102 PQSGSVLHIELA 113 (286)
Q Consensus 102 ~~~g~~l~v~~~ 113 (286)
||.|+|++-
T Consensus 84 ---Gr~L~V~~k 92 (95)
T 1ufw_A 84 ---GRAVKISGP 92 (95)
T ss_dssp ---TEEEEEECC
T ss_pred ---CeEEEEecc
Confidence 999999863
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=2.8e-08 Score=81.88 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=62.5
Q ss_pred CCeEEEcCCCC-----CCCHHHHHHHhhcCCCccEEEEEecCC------CCeeEEEEEEcCHHHHHHHHHHhCCCccCCC
Q 023143 35 INTLFVSGLPD-----DVRAREIHNLFRRKPGFDFCQLKYTGR------GNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (286)
Q Consensus 35 ~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~~~~------~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (286)
.+.+.+.|+-. +-.+++|++.|++||.|.++.+..... ..+|++||+|.+.++|.+|++.|||+.+.
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~-- 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA-- 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS--
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC--
Confidence 44455555432 235679999999999999998863322 23459999999999999999999999998
Q ss_pred CCCeEEEEEeecC
Q 023143 104 SGSVLHIELARSN 116 (286)
Q Consensus 104 ~g~~l~v~~~~~~ 116 (286)
||.|++.|+...
T Consensus 202 -gr~i~~~~~~~~ 213 (222)
T 3dxb_A 202 -GRKVVAEVYDQE 213 (222)
T ss_dssp -SSBCEEEECCHH
T ss_pred -CeEEEEEEcCHH
Confidence 999999998643
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=2.3e-07 Score=65.77 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=65.4
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcC-----CCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVY-----PGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~-----G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.++|=|-|||.+++...|+.+.+.+ |.+..+.+..+. +=|+|+|.+...|.+|.-+|+|.+|. |+.|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~---gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQ---GKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEET---TEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeec---CeEEEec
Confidence 6788899999999999999999999 999999999866 66999999999999999999999999 5599886
Q ss_pred E
Q 023143 278 Y 278 (286)
Q Consensus 278 ~ 278 (286)
=
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.35 E-value=1.6e-06 Score=61.53 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=64.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcC-----CCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeE
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRK-----PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (286)
..++|=+=|||..++...|+.+.+++ |.|..+.+.-+- + -|+|+|.+...|.+|.=.|+|.+|. |++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~---GAivef~d~~~AgKasLaL~G~ef~---gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-N---GAIIIFRDSKFAAKMLMILNGSQFQ---GKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-T---EEEEECSCHHHHHHHHHHHSSEEET---TEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-C---ceEEEEccchhhHHHHhhcCCeeec---CeEE
Confidence 36889999999999999999999999 999988887333 3 6999999999999999999999998 9999
Q ss_pred EEEE
Q 023143 109 HIEL 112 (286)
Q Consensus 109 ~v~~ 112 (286)
++.-
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9873
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=1e-06 Score=62.30 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=62.3
Q ss_pred ccEEEEccCCCCC-CH----HHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 203 CSTLFIANLGPNC-TE----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 203 ~~~L~v~NL~~~~-te----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
.++|+|.||+..+ .. +.++++|..|+........+.- .-..|.|.+.++|.+|...|||..+. |+.|+|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~---g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFL---GKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEET---TEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceec---CceeEEE
Confidence 5679999999644 22 5778999999999888777754 46899999999999999999999999 5599999
Q ss_pred Eec
Q 023143 278 YAR 280 (286)
Q Consensus 278 ~ak 280 (286)
||.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 986
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.28 E-value=6.8e-06 Score=57.11 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=63.9
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCC------ccEEEEEECCHHHHHHHHHhcCCCccCCCCCC--cEE
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG------MPVAFADFEEVEQASIAMEGLQDSTLPSSDRG--GMH 275 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~------~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~--~l~ 275 (286)
+.|.|++||+++||+++.+.++..+.+....+..++. ...|+|.|.+.+++..-.+.++|..+.+.-|+ .-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4588999999999999999999999988888877431 12899999999999999999999999776344 335
Q ss_pred EEEec
Q 023143 276 IEYAR 280 (286)
Q Consensus 276 V~~ak 280 (286)
|+||-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77764
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.01 E-value=3.2e-05 Score=53.72 Aligned_cols=54 Identities=15% Similarity=0.290 Sum_probs=44.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhC
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (286)
..++| ++|..+...||..+|+.||.|.--.|. .. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999987433333 44 99999999999999999764
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.00 E-value=2.4e-05 Score=55.25 Aligned_cols=73 Identities=22% Similarity=0.186 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCC-CH----HHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEE
Q 023143 35 INTLFVSGLPDDV-RA----REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (286)
Q Consensus 35 ~~~lfV~nLp~~~-te----~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (286)
-++|+|.||+.++ .. +.++++|..|+++.......+-| =.-|.|.++++|.+|...||+..+. |+.++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~---g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFL---GKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEET---TEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceec---CceeE
Confidence 3679999999876 32 46789999999998887773333 4799999999999999999999998 99999
Q ss_pred EEEee
Q 023143 110 IELAR 114 (286)
Q Consensus 110 v~~~~ 114 (286)
|-++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99987
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.91 E-value=0.00011 Score=51.04 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=58.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEec---CC-CCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCe--EE
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT---GR-GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV--LH 109 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~---~~-~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~--l~ 109 (286)
..|-|++||+.+||+++++.++..+.++-...... .+ ..-.-|||.|.+.+++....+.++|..+.-..|.. -.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 46889999999999999999999988765555411 11 11128999999999999999999999995223432 23
Q ss_pred EEEe
Q 023143 110 IELA 113 (286)
Q Consensus 110 v~~~ 113 (286)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5554
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.82 E-value=3e-05 Score=54.01 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=43.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhC
Q 023143 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (286)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (286)
.++| ++|..+...||..+|+.||.| .|.+-... .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv---~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI---QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE---EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE---EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999965 34433344 99999999999999999875
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.74 E-value=5.4e-05 Score=52.87 Aligned_cols=78 Identities=17% Similarity=0.286 Sum_probs=61.2
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecC-C-----ccEEEEEECCHHHHHHHHHhcCCCccCCCCCC--cE
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-G-----MPVAFADFEEVEQASIAMEGLQDSTLPSSDRG--GM 274 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~-~-----~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~--~l 274 (286)
+-.|.|+.||+++||+++.+.++..-.+....+..++ + -..|+|.|.+.++...-.+.++|..+.+.-|. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 5568999999999999999999887766555554422 1 12799999999999999999999999876344 55
Q ss_pred EEEEec
Q 023143 275 HIEYAR 280 (286)
Q Consensus 275 ~V~~ak 280 (286)
.|+||-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 577764
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=0.00029 Score=49.50 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=47.0
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhc---C--CCceEEEEeecCCccEEEEEECCHHHHHHHHHh
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSV---Y--PGFNMLKMRARGGMPVAFADFEEVEQASIAMEG 260 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~---~--G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ 260 (286)
.++|.|.|||..+.++.|.-+|+. - |.|..++... +-|+|+|.+.+.|++.|+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 788999999999999999999987 2 4677777766 4599999999999999987
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.00048 Score=48.43 Aligned_cols=72 Identities=21% Similarity=0.157 Sum_probs=55.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-----CCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCC
Q 023143 32 DNGINTLFVSGLPDDVRAREIHNLFRR-----KPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (286)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (286)
+.-.++|.|.|||..++++.|.-.|+. =|+|+.|+.. .+ -|+|+|.+.+.|.+.++. ..-.|. +.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~---~~---~AvItF~d~~va~rVL~k-~~H~L~---~~ 74 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL---GC---GGVLTFREPADAERVLAQ-ADHELH---GA 74 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE---TT---EEEEEESSHHHHHHHHTC-SCCBSS---SS
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc---CC---cEEEEEcChHHHHHHhcC-Ccceec---Ce
Confidence 345689999999999999999999986 2567877776 34 899999999999999864 123344 66
Q ss_pred eEEEEEe
Q 023143 107 VLHIELA 113 (286)
Q Consensus 107 ~l~v~~~ 113 (286)
+|.|...
T Consensus 75 ~LsV~P~ 81 (104)
T 2dhx_A 75 QLSLRPA 81 (104)
T ss_dssp BCEEEEC
T ss_pred EEEEEcC
Confidence 7777643
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.50 E-value=0.0005 Score=47.73 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=47.3
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 262 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ln 262 (286)
..+++| +.|+++-..||.++|+.||.|. |+-+.+. -|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 667778 9999999999999999999774 5556654 59999999999999999874
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.36 E-value=0.00073 Score=49.04 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=55.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEEEEe
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~~ 113 (286)
..+.|-|-+.|... ...+...|+.||.|.+.... ...| +-.|.|.++.+|++||. .||..| +..+-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~N---WihI~Y~s~~~A~rAL~-kNG~ii----~g~~mIGV~ 92 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGN---WMHIRYQSKLQARKALS-KDGRIF----GESIMIGVK 92 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSS---EEEEEESSHHHHHHHHT-TTTCEE----TTTEECEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCC---eEEEEeCCHHHHHHHHH-hCCeEe----cCCEEEEEE
Confidence 46779999999985 66777889999999877652 3344 99999999999999996 699988 445555544
Q ss_pred e
Q 023143 114 R 114 (286)
Q Consensus 114 ~ 114 (286)
.
T Consensus 93 p 93 (119)
T 1wwh_A 93 P 93 (119)
T ss_dssp E
T ss_pred E
Confidence 3
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.18 E-value=0.0016 Score=47.28 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=53.0
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccC
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP 267 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~ 267 (286)
..+.|-|-+.|.. ....+...|++||.|.+.... .+..+..|+|.+..+|++||.. ||..+.
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~--~~~NWihI~Y~s~~~A~rAL~k-NG~ii~ 84 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS--NTGNWMHIRYQSKLQARKALSK-DGRIFG 84 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC--SSSSEEEEEESSHHHHHHHHTT-TTCEET
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC--CCCCeEEEEeCCHHHHHHHHHh-CCeEec
Confidence 3778889999988 478888999999999987763 3337999999999999999977 999986
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.00 E-value=0.00057 Score=47.69 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=54.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCe-----eEEEEEEcCHHHHHHHHHHhCCCccCCCCCC--e
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ-----VVAFATFVNHQTAVAALHELNGVKFDPQSGS--V 107 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~-----~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~--~ 107 (286)
+-.|-|+.||+.+||+++.+.++..-+++..... .++... .-|||.|.+.++.....+..+|..+.-.+|. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-AADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-CCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-CCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 5669999999999999999888876554322211 111111 1799999999999999999999998522333 3
Q ss_pred EEEEEe
Q 023143 108 LHIELA 113 (286)
Q Consensus 108 l~v~~~ 113 (286)
-.|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 345554
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.98 E-value=0.0015 Score=45.53 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.1
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 262 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ln 262 (286)
..+++| +.|+++-..||.++|+.||.| .|+-+.+. -|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 567778 999999999999999999965 45566654 59999999999999999875
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.86 E-value=0.0005 Score=62.03 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=43.8
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHh
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEG 260 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~ 260 (286)
.++|||. .+..+++.+|.+.|++||.|.++.+-..++ .||.|+|.+.++++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHhc
Confidence 6899996 799999999999999999999998887552 4999999999999988765
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.73 E-value=0.00089 Score=60.38 Aligned_cols=54 Identities=7% Similarity=0.143 Sum_probs=41.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHH
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALH 93 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~ 93 (286)
|.|||. .|..+++.+|.+.|+.||.|.++.+- +.++.||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~---~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFY---ESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE---CSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE---ccCCeEEEEEeCCHHHHHHHHh
Confidence 889998 79999999999999999999988777 3334599999999999886654
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.81 E-value=0.013 Score=43.11 Aligned_cols=73 Identities=4% Similarity=-0.020 Sum_probs=51.9
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceE-EEEee----------------c-CCccEEEEEECCHHHHHHHHHhcCCC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNM-LKMRA----------------R-GGMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~-v~~~~----------------~-~~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
...|.|-+.|.+ ....+.+.|++||.|.+ +...+ . .+..+.-|+|++..+|++||.. ||.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 345666677766 56778889999999865 21111 0 1346999999999999999966 999
Q ss_pred ccCCCCCCcEEEEEec
Q 023143 265 TLPSSDRGGMHIEYAR 280 (286)
Q Consensus 265 ~~~~~~g~~l~V~~ak 280 (286)
.|. |..|-|....
T Consensus 85 ii~---G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFN---GVLLGVIPYT 97 (132)
T ss_dssp EET---TEECEEEECC
T ss_pred EeC---cEEEEEEECC
Confidence 987 4466666543
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.84 E-value=0.068 Score=49.02 Aligned_cols=56 Identities=16% Similarity=0.288 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCC
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g 97 (286)
...++|+ +|..+...+|.++|+.||.| .|.+-.+. .|||.|.+.++|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v---~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI---QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC---EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE---EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 4567776 99999999999999999966 33333344 999999999999999998853
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.43 E-value=0.091 Score=38.58 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=50.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcCCCccE-EEEE------------------ecCCCCeeEEEEEEcCHHHHHHHHHH
Q 023143 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDF-CQLK------------------YTGRGNQVVAFATFVNHQTAVAALHE 94 (286)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~------------------~~~~~~~~~aFV~F~~~~~A~~A~~~ 94 (286)
....|.|-+.|.+.+. .+-+.|++||.|.+ +... +.+.+ +.-|+|.++.+|.+|+.
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~N---WikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNS---WTKITYDNPASAVDALL- 80 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETT---EEEEEBSSHHHHHHHHT-
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCc---EEEEEcCCHHHHHHHHH-
Confidence 3456888888776554 45578999999965 2110 01223 99999999999999996
Q ss_pred hCCCccCCCCCCeEEEEEe
Q 023143 95 LNGVKFDPQSGSVLHIELA 113 (286)
Q Consensus 95 l~g~~~~~~~g~~l~v~~~ 113 (286)
.||..|. |..|=|.+.
T Consensus 81 ~NG~ii~---G~mIGV~Py 96 (132)
T 3p3d_A 81 ENGAVFN---GVLLGVIPY 96 (132)
T ss_dssp TTTCEET---TEECEEEEC
T ss_pred hCCeEeC---cEEEEEEEC
Confidence 7899996 765555554
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.66 E-value=0.48 Score=43.33 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=46.7
Q ss_pred ccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhcCCC
Q 023143 203 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 264 (286)
Q Consensus 203 ~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~ 264 (286)
..+++|+ .+..+...+|.++|+.||.|. |+-+.. ..|||.|.+.+.|..++.+++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~widd---t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECSS---SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEcC---CeEEEEECCHHHHHHHHHHHHhC
Confidence 5678886 888999999999999999763 444443 46999999999999999998543
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=78.68 E-value=2.1 Score=27.82 Aligned_cols=67 Identities=10% Similarity=0.260 Sum_probs=43.0
Q ss_pred EEEEccCC--CCCCHHHHHHHHhcCCCce-----EEEEeecCCccEEEEEECCHHHHHHHHHhcCCCccCCCCCCcEEEE
Q 023143 205 TLFIANLG--PNCTEDELKQTLSVYPGFN-----MLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 277 (286)
Q Consensus 205 ~L~v~NL~--~~~te~~L~~~F~~~G~v~-----~v~~~~~~~~~~afV~f~~~e~A~~Al~~lng~~~~~~~g~~l~V~ 277 (286)
+||| |+. ..+..-+|..++..-+.+. .+++.. .|.||+-. .+.|..+++.|++..+. |+.++|+
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~-~~~~~~~~~~l~~~~i~---g~~~~v~ 72 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEIL-NGKGPHVLKVMKNTTVK---GKQLKVN 72 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEEC-TTCHHHHHHHHTTCCC------CCCEE
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEEC-HHHHHHHHHHhccccCc---CceEEEE
Confidence 5666 444 3667777777777666543 444433 36999987 56688899999999998 5599888
Q ss_pred Eec
Q 023143 278 YAR 280 (286)
Q Consensus 278 ~ak 280 (286)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 775
No 404
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=75.58 E-value=7 Score=29.50 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhhcCCCc
Q 023143 14 IHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGF 62 (286)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i 62 (286)
+|.+|+..|.++.+..-..+....+|++++...=..+.|.+.|.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~ 51 (177)
T 2f9f_A 3 HHHHHHSHPVETSKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKLQDE 51 (177)
T ss_dssp ---------CCCTTCCCCCCCSCEEEECCSSGGGTHHHHHHHHHHCTTS
T ss_pred ccccccCCCccccccccCCCCCEEEEEeccccccCHHHHHHHHHhCCCc
Confidence 4555555555554444455566789999999877888888888877444
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=72.92 E-value=19 Score=24.24 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=48.9
Q ss_pred CccEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECCHHHHHHHHHhc
Q 023143 202 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 261 (286)
Q Consensus 202 ~~~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~Al~~l 261 (286)
.++-+-|-|+|..+-..++.-...-.|---.|..+.+. |.++|.+-++-..|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyidgq----amirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQ----AMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSC----EEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCe----eEEEecCChHHHHHHHHH
Confidence 36778888999999999998888888877788888877 999999999999999876
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=68.73 E-value=12 Score=28.69 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=37.6
Q ss_pred EEEcCCCC---------CCCHHHHHHHh--hcCCCccEEEEEecCCCCeeEEEEEEcCHHH
Q 023143 38 LFVSGLPD---------DVRAREIHNLF--RRKPGFDFCQLKYTGRGNQVVAFATFVNHQT 87 (286)
Q Consensus 38 lfV~nLp~---------~~te~~L~~~F--~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~ 87 (286)
+.|-|+|. .....+|++.| +.|.++ .|+.....++..++|.|.|.+--.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCCCceeEEEEecCChH
Confidence 55667765 24567999977 999997 577777778877899999998654
No 407
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=60.47 E-value=7.9 Score=18.71 Aligned_cols=16 Identities=50% Similarity=0.903 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCCCC
Q 023143 11 LPPIHPPPPPVPPPPY 26 (286)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (286)
.+++|+-+.++||||-
T Consensus 2 pppahhnmfsvppppi 17 (26)
T 2bn5_B 2 PPPAHHNMFSVPPPPI 17 (26)
T ss_dssp CCCCCCCCCSCCCCSC
T ss_pred cCCccCceecCCCCCc
Confidence 4678888888888773
No 408
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=60.45 E-value=30 Score=22.06 Aligned_cols=68 Identities=15% Similarity=0.304 Sum_probs=41.0
Q ss_pred eEEEcCCC-CCCCHHHHHHHhhcCCCc-----cEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHhCCCccCCCCCCeEEE
Q 023143 37 TLFVSGLP-DDVRAREIHNLFRRKPGF-----DFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (286)
Q Consensus 37 ~lfV~nLp-~~~te~~L~~~F~~~G~i-----~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (286)
++||..=- ..++..+|..++..-+.| -.+.+. .+ |.||+-... .|.++++.|++..+. |+.+++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~---~s~v~v~~~-~~~~~~~~l~~~~i~---g~~~~v 71 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM---DN---ASYVEILNG-KGPHVLKVMKNTTVK---GKQLKV 71 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC---SS---CEEEEECTT-CHHHHHHHHTTCCC------CCCE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe---CC---cEEEEECHH-HHHHHHHHhccccCc---CceEEE
Confidence 45553222 235666776666555544 334444 44 899998875 588899999999997 999998
Q ss_pred EEee
Q 023143 111 ELAR 114 (286)
Q Consensus 111 ~~~~ 114 (286)
+.++
T Consensus 72 ~~~~ 75 (76)
T 2g0c_A 72 NKAN 75 (76)
T ss_dssp EECC
T ss_pred EECC
Confidence 8653
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=46.99 E-value=35 Score=26.04 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=32.4
Q ss_pred EEEccCCC---------CCCHHHHHHHH--hcCCCceEEEEee-cCCccEEEEEECCH
Q 023143 206 LFIANLGP---------NCTEDELKQTL--SVYPGFNMLKMRA-RGGMPVAFADFEEV 251 (286)
Q Consensus 206 L~v~NL~~---------~~te~~L~~~F--~~~G~v~~v~~~~-~~~~~~afV~f~~~ 251 (286)
..|-|++. ..+..+|++.| +.|..+....+.. ....|+|.|.|.+-
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 34568886 24568999977 9999987555554 33356999999764
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=39.77 E-value=58 Score=19.99 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=42.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHH
Q 023143 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94 (286)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~ 94 (286)
..++.|.|+...--...+...++. ..|..+.+.+..+ -+.|.|.+.++..++++.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~----~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEA----VVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEE----EEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCC----EEEEEECCHHHHHHHHHH
Confidence 356889999888888899999999 8898888774322 678888866666777764
No 411
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=33.18 E-value=29 Score=32.60 Aligned_cols=53 Identities=8% Similarity=0.045 Sum_probs=38.8
Q ss_pred ccCCCCCCHHHHHHHH----hcCCCceEEEEee---cCCccEEEEEECCHHHHHHHHHhc
Q 023143 209 ANLGPNCTEDELKQTL----SVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGL 261 (286)
Q Consensus 209 ~NL~~~~te~~L~~~F----~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~Al~~l 261 (286)
+..+.+.+--||..+| ..+|-|+++.|.- ...+.++++.|.+.++|.+++..+
T Consensus 349 ~~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3445555666888888 3678888777653 333357899999999999998775
No 412
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=27.70 E-value=61 Score=19.35 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=39.7
Q ss_pred cEEEEccCCCCCCHHHHHHHHhcCCCceEEEEeecCCccEEEEEECC---HHHHHHHHHh
Q 023143 204 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE---VEQASIAMEG 260 (286)
Q Consensus 204 ~~L~v~NL~~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~---~e~A~~Al~~ 260 (286)
.++.|.++.-.--...+...+.....|..+.+--.. +-+.|.|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL--EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC--CEEEEEECCCCCHHHHHHHHHH
Confidence 467788888776778889999999899887765544 568888843 4445555554
No 413
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=27.60 E-value=76 Score=22.78 Aligned_cols=35 Identities=11% Similarity=-0.054 Sum_probs=22.7
Q ss_pred CCCceEEEEeecCCccEEEEE-ECCHHHHHHHHHhc
Q 023143 227 YPGFNMLKMRARGGMPVAFAD-FEEVEQASIAMEGL 261 (286)
Q Consensus 227 ~G~v~~v~~~~~~~~~~afV~-f~~~e~A~~Al~~l 261 (286)
+-.|..|++-.+.+...+||. |-+.++...++++|
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHH
Confidence 457889998888765677777 65554444444433
No 414
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=25.71 E-value=1.5e+02 Score=19.77 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=44.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEEecCCCCeeEEEEEEcCHHHHHHHHHHh
Q 023143 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (286)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (286)
..++-|-|-|+|..+-..++.-.-...|---.|... .| .|.|.|.+.++-+.|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi---dg---qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DG---QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SS---CEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cC---eeEEEecCChHHHHHHHHH
Confidence 357889999999988777766555666665555555 44 8999999999999999875
No 415
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=24.19 E-value=59 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcCCCccEEEEE
Q 023143 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (286)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~ 68 (286)
..+.|+|||+.++..-|..+++. +.+..+.+.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 35789999999999999999987 656444333
No 416
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=25.76 E-value=21 Score=24.86 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=32.9
Q ss_pred CCHHHHHHHhhcCCCccEEEEEecCCCCee---EEEEEEcCHHHHHHHHHHhCCCc
Q 023143 47 VRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVNHQTAVAALHELNGVK 99 (286)
Q Consensus 47 ~te~~L~~~F~~~G~i~~v~i~~~~~~~~~---~aFV~F~~~~~A~~A~~~l~g~~ 99 (286)
-++++|..+....+ +..+.+....++++. .-+=.|.+.++|.+|+..|-...
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 35667777777776 444555433344344 22337999999999998876543
Done!