Query 023144
Match_columns 286
No_of_seqs 150 out of 1145
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 08:45:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3071 Fatty acyl-CoA elongas 100.0 1.7E-63 3.8E-68 456.1 16.1 252 27-285 3-270 (274)
2 PTZ00251 fatty acid elongase; 100.0 1.4E-62 3.1E-67 452.9 15.6 238 39-280 15-269 (272)
3 PF01151 ELO: GNS1/SUR4 family 100.0 7.4E-62 1.6E-66 443.8 17.2 229 46-280 2-249 (250)
4 KOG3072 Long chain fatty acid 100.0 1.2E-54 2.7E-59 395.3 5.9 233 37-276 25-268 (282)
5 PF06210 DUF1003: Protein of u 33.8 1.4E+02 0.0031 23.9 5.9 55 47-103 1-55 (108)
6 PF07851 TMPIT: TMPIT-like pro 18.8 3.5E+02 0.0076 26.1 6.5 24 187-210 216-244 (330)
7 KOG3071 Fatty acyl-CoA elongas 16.3 1.3E+02 0.0028 28.3 2.8 61 216-284 199-265 (274)
8 COG4420 Predicted membrane pro 14.4 4.3E+02 0.0094 23.5 5.4 54 46-104 54-110 (191)
9 PF11119 DUF2633: Protein of u 12.8 1.9E+02 0.0041 20.9 2.3 15 256-270 13-27 (59)
10 PF10160 Tmemb_40: Predicted m 12.5 6.1E+02 0.013 23.7 6.1 24 77-100 188-216 (261)
No 1
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=100.00 E-value=1.7e-63 Score=456.15 Aligned_cols=252 Identities=32% Similarity=0.541 Sum_probs=215.7
Q ss_pred hhhccCCCccccccccCC----CCCCChhHHHHHHHHHHHHHhhccccccccccccCch----hHHHHHHHHHHHHHHHH
Q 023144 27 YWLVNHPKILNFAWTQGE----TLGSSPQFLTLTVLSYLSLTFLLYQVPISLEYHLRQR----IAVVHNLFLITASSIMA 98 (286)
Q Consensus 27 ~~~~~~p~~~~f~~~~~~----~~~~s~~~~~~i~~~Yl~~V~~l~~~m~~m~~~rkp~----~l~~~N~~l~~~S~~~~ 98 (286)
|+..++|.+.+++|..|. +++++|+++..++.+|+ +|..+ +|+.|+ ||||+ ++.+||++|++.|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~~~~l~s~~~~~~il~~yl-~v~~~--G~~~m~-nrkp~~l~~~~~vyN~~~vl~s~~i~ 78 (274)
T KOG3071|consen 3 YPLAEHPLIDNFRWSPDDRVRSPLLSSPWPLLSILLAYL-FVLKL--GPKLMR-NRKPLKLRGLSQVYNLGQVLLSAAIF 78 (274)
T ss_pred chhhhchHHHHhcCCCCccccchhccCcHHHHHHHHHHH-HHHHh--cHhhhc-cCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999998876 56799999999999999 55443 688889 99999 88999999999999977
Q ss_pred Hhhhhhhhcc-CCCeeeeeecCCCCCCCCchhHHHHHHHHhhhhhhcchhhhhhcCCCccceeEEEeechhhhhhhhhhc
Q 023144 99 LGSSLSILSR-SPTIQYIICFPRNTKPNGPLFFWGYMFYLSKIYEYGDTLLILVSNPIKRLSFLHVYHHTIVVIMCYLGV 177 (286)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~C~~~~~~~~~~~~~~~~~f~lSK~~El~DTvf~VLRKK~~qlsFLHvYHH~~~~~~~w~~~ 177 (286)
.+.....+.. ..++.+..|+|.|.++++++.+|+|+||+||+.||+||+|+|||||+||+||||+|||++|++.||.++
T Consensus 79 ~~~~~~~~~~~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l 158 (274)
T KOG3071|consen 79 LEGELWRWLKTAYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWL 158 (274)
T ss_pred HHHHHHhhhccccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhhee
Confidence 7666554443 234567778888778888999999999999999999999999999999999999999999999999999
Q ss_pred cccc-cchhHHHHHHHHHHHHHHHHHHHHHhCCCc----ccccccccccchhhHHHHHHHHhhhhhcccCCCCCchHH-H
Q 023144 178 HYAQ-SSLPLVVLTNCLVHVLMYFYYLLCALGFKP----KWKRLVTDCQILQFLSSFVIFSLIFGYHFTTSGCAGIMS-C 251 (286)
Q Consensus 178 ~~~~-~~~~~~~~~Ns~VHviMY~YY~lsa~g~~~----~wKk~IT~lQivQFvi~~~~~~~~~~~~~~~~~C~~~~~-~ 251 (286)
++.+ +.++..+.+|++||++||+||++||+|++. |||+++|.+|++||++..++..... ...++|+.+.+ +
T Consensus 159 ~~~~~g~~~~~~~lNs~VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~---~~~~~c~~~~~~~ 235 (274)
T KOG3071|consen 159 KFYGGGHGFFAILLNSFVHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVH---LFKPGCCFGIGAW 235 (274)
T ss_pred EEeCCceeeeeeehhhhHHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhhee---eecCCCCCchHHH
Confidence 9877 656678899999999999999999999984 6999999999999999988777651 22458888866 5
Q ss_pred HHH-HHHHHHHHHHHHHHhHhhcCCCCCCcccccc
Q 023144 252 CFS-ATFIITLLYLFFDFHSKNYSAKAGTKDQIKK 285 (286)
Q Consensus 252 ~~~-~~~~~s~l~LF~~Fy~ksY~k~~~~~~~~~~ 285 (286)
.+. .+..++|++||.|||.|+|.|+++++.|+|+
T Consensus 236 ~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~~~~~~ 270 (274)
T KOG3071|consen 236 AFNGSVINVSFLLLFSNFYIKTYKKPKKKKAKKKA 270 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 554 5678999999999999999988776665554
No 2
>PTZ00251 fatty acid elongase; Provisional
Probab=100.00 E-value=1.4e-62 Score=452.91 Aligned_cols=238 Identities=22% Similarity=0.317 Sum_probs=195.1
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHhhccccccc-cccccCch-----hHHHHHHHHHHHHHHHHHhhhhhhhcc--CC
Q 023144 39 AWTQGETLGSSPQFLTLTVLSYLSLTFLLYQVPIS-LEYHLRQR-----IAVVHNLFLITASSIMALGSSLSILSR--SP 110 (286)
Q Consensus 39 ~~~~~~~~~~s~~~~~~i~~~Yl~~V~~l~~~m~~-m~~~rkp~-----~l~~~N~~l~~~S~~~~~~~~~~~~~~--~~ 110 (286)
+..++| +++||++++.++++|+++|+.+++.||. || +|||+ ++++||++|+++|++++++.....+.. .+
T Consensus 15 ~~~~~w-l~~~~~~~~~i~~~Yl~~V~~Gp~~M~~~~~-~Rkp~~~Lr~~l~~yNl~l~v~s~~~~~~~~~~~~~~~~~~ 92 (272)
T PTZ00251 15 HAVQKW-LASNVDICVYIAAAYLTFVFKGPQLVDAIFH-GNPPVPLIKKCWALWNIGLSVFSMYGVYRVVPPLLNNLRKY 92 (272)
T ss_pred HHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556 7799999999999999999977666653 45 79998 789999999999999999987554422 23
Q ss_pred CeeeeeecCCCCC-CCCchhHHHHHHHHhhhhhhcchhhhhhcCCCccceeEEEeechhhhhhhhhhccccccchhHHHH
Q 023144 111 TIQYIICFPRNTK-PNGPLFFWGYMFYLSKIYEYGDTLLILVSNPIKRLSFLHVYHHTIVVIMCYLGVHYAQSSLPLVVL 189 (286)
Q Consensus 111 ~~~~~~C~~~~~~-~~~~~~~~~~~f~lSK~~El~DTvf~VLRKK~~qlsFLHvYHH~~~~~~~w~~~~~~~~~~~~~~~ 189 (286)
++++..|++.+++ .++++++|+|+|++||++||+||+|+|||| ||+||||||||++|++.+|..+..+.+...++++
T Consensus 93 g~~~~~C~~~~~~~~~~~~~~~~~~f~lsK~~El~DTvF~VLRK--KqvsFLHvYHH~~~~~~~w~~~~~g~~~~~~~~~ 170 (272)
T PTZ00251 93 GLHDTLCTFREDEFYTGKVGVAMGLFSISKVPEFGDTFFLIMGG--KKLPFLSWFHHVTIFLYAWMSYQQGSSIWICAAA 170 (272)
T ss_pred CcceeeecCCCCcchhHHHHHHHHHHHHHHHHHHHhHhhhhhcC--CCchHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5577899754333 246889999999999999999999999999 5999999999999999999987655555556789
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc---ccccccccccchhhHHHHHHHHhhhhhc--c-cCCCCCchH-HHH-HHHHHHHHH
Q 023144 190 TNCLVHVLMYFYYLLCALGFKP---KWKRLVTDCQILQFLSSFVIFSLIFGYH--F-TTSGCAGIM-SCC-FSATFIITL 261 (286)
Q Consensus 190 ~Ns~VHviMY~YY~lsa~g~~~---~wKk~IT~lQivQFvi~~~~~~~~~~~~--~-~~~~C~~~~-~~~-~~~~~~~s~ 261 (286)
+|++||++||+||+++|+|+++ +|||+||++||+||+++++++...++.. . .+.+|+.+. ... ...++++||
T Consensus 171 lNs~VH~iMY~YY~lsa~g~~~~~~~~kk~IT~lQi~Qfv~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~s~ 250 (272)
T PTZ00251 171 MNYFVHSIMYFYFALSEAGFKKLVKPFAMYITLLQITQMVGGLFVSGYVIVQKLTKGDPKGCSGTTMATARGQLMIYIFN 250 (272)
T ss_pred HHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999972 4899999999999999999988776532 1 134698765 333 345688999
Q ss_pred HHHHHHHhHhhcCCCCCCc
Q 023144 262 LYLFFDFHSKNYSAKAGTK 280 (286)
Q Consensus 262 l~LF~~Fy~ksY~k~~~~~ 280 (286)
++||.|||+|+|.++|+++
T Consensus 251 l~LF~~Fy~~~Y~~~~~~~ 269 (272)
T PTZ00251 251 FYLFSEMFVKGYVLPRKAK 269 (272)
T ss_pred HHHHHHHHHHHhCCCCCCC
Confidence 9999999999998775554
No 3
>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established. The proteins have from 290 to 435 amino acid residues. Structurally, they seem to be formed of three sections: a N-terminal region with two transmembrane domains, a central hydrophilic loop and a C-terminal region that contains from one to three transmembrane domains. Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis []. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 (P40319 from SWISSPROT) affects plasma membrane H+-ATPase activity, and may act on a glucose-signalling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1 []. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=7.4e-62 Score=443.78 Aligned_cols=229 Identities=34% Similarity=0.611 Sum_probs=193.9
Q ss_pred CCCChhHHHHHHHHHHHHHhhccccccccccccCch----hHHHHHHHHHHHHHHHHHhhhhhhhcc--CCCeeeeeecC
Q 023144 46 LGSSPQFLTLTVLSYLSLTFLLYQVPISLEYHLRQR----IAVVHNLFLITASSIMALGSSLSILSR--SPTIQYIICFP 119 (286)
Q Consensus 46 ~~~s~~~~~~i~~~Yl~~V~~l~~~m~~m~~~rkp~----~l~~~N~~l~~~S~~~~~~~~~~~~~~--~~~~~~~~C~~ 119 (286)
+++||++++.++++|+++|+.+ ++.|| ||||+ ++.+||++|+++|+++++++++..... ++|+++..|++
T Consensus 2 l~~~~~~~~~~~~~Yl~~V~~g---~~~m~-~Rkp~~Lk~~~~~~N~~l~~~S~~~~~~~~~~~~~~~~~~g~~~~~C~~ 77 (250)
T PF01151_consen 2 LMSNPWFPILIVVLYLLFVFLG---PRFMK-NRKPFNLKTLIIVYNLFLVVFSAYMFYGILPALFSSLFKGGLYSSFCQP 77 (250)
T ss_pred cccCCHHHHHHHHHHHHHHHHH---HHHHh-hCCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 3578999999999999999876 45558 99999 899999999999999999999654433 23667889953
Q ss_pred C----CCCCCCchhHHHHHHHHhhhhhhcchhhhhhcCCCccceeEEEeechhhhhhhhhhccccc-cchhHHHHHHHHH
Q 023144 120 R----NTKPNGPLFFWGYMFYLSKIYEYGDTLLILVSNPIKRLSFLHVYHHTIVVIMCYLGVHYAQ-SSLPLVVLTNCLV 194 (286)
Q Consensus 120 ~----~~~~~~~~~~~~~~f~lSK~~El~DTvf~VLRKK~~qlsFLHvYHH~~~~~~~w~~~~~~~-~~~~~~~~~Ns~V 194 (286)
. ++...+++++|.|+|++||++|++||+|+|||| ||+||||||||++|++++|.++..+. +..++++++|++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~fylSK~~EllDTvflvLrk--K~lsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~N~~V 155 (250)
T PF01151_consen 78 VDFDPDSYSSGRVGFWYWLFYLSKYYELLDTVFLVLRK--KQLSFLHVYHHASTLLYCWISYKYGPGGQIWFIAALNSFV 155 (250)
T ss_pred cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHhhhhhhhhhhhheeeeccccchhHHHHHHHHH
Confidence 3 334456889999999999999999999999999 59999999999999999999999884 4455677999999
Q ss_pred HHHHHHHHHHHHhCCC---cccccccccccchhhHHHHHHHHhhhhhccc-CCCC---CchHH-HHHHHHHHHHHHHHHH
Q 023144 195 HVLMYFYYLLCALGFK---PKWKRLVTDCQILQFLSSFVIFSLIFGYHFT-TSGC---AGIMS-CCFSATFIITLLYLFF 266 (286)
Q Consensus 195 HviMY~YY~lsa~g~~---~~wKk~IT~lQivQFvi~~~~~~~~~~~~~~-~~~C---~~~~~-~~~~~~~~~s~l~LF~ 266 (286)
|++||+||+++|+|.| .||||+||.+||+||+++++++..+++.+.. +.+| +.+.. ..++.++++|+++||.
T Consensus 156 H~iMY~YY~l~a~g~~~~~~~~k~~IT~~Qi~QF~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~s~l~LF~ 235 (250)
T PF01151_consen 156 HVIMYSYYFLSALGIRKVPRWWKKYITSLQIVQFVIGIVHTVYALYYYFFPGGDCDTSGYPKFNAILGLVYYVSYLYLFI 235 (250)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHhHHhhhhhHHHHHHHHHHhheeccCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 5899999999999999999998887765433 3579 45443 4556778999999999
Q ss_pred HHhHhhcCCCCCCc
Q 023144 267 DFHSKNYSAKAGTK 280 (286)
Q Consensus 267 ~Fy~ksY~k~~~~~ 280 (286)
|||+|+|.+|++||
T Consensus 236 ~Fy~~~Y~~~~~~k 249 (250)
T PF01151_consen 236 NFYIKSYIKKKKKK 249 (250)
T ss_pred HHHHHHhCcCCCCC
Confidence 99999998776553
No 4
>KOG3072 consensus Long chain fatty acid elongase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-54 Score=395.31 Aligned_cols=233 Identities=25% Similarity=0.313 Sum_probs=199.2
Q ss_pred ccccccCCCCC-CChhHHHHHHHHHHHHHhhccccccccccccCch----hHHHHHHHHHHHHHHHHHhhhhhhhcc--C
Q 023144 37 NFAWTQGETLG-SSPQFLTLTVLSYLSLTFLLYQVPISLEYHLRQR----IAVVHNLFLITASSIMALGSSLSILSR--S 109 (286)
Q Consensus 37 ~f~~~~~~~~~-~s~~~~~~i~~~Yl~~V~~l~~~m~~m~~~rkp~----~l~~~N~~l~~~S~~~~~~~~~~~~~~--~ 109 (286)
+|.-++.+.++ +++...+.++++|+++|+++|..| + ||||+ ++.+||.+++++|+.+++.+.++.+.. .
T Consensus 25 ~F~~~~~~~~~~~~~~~si~is~~Y~v~if~~q~fM---~-~RkpF~L~~pL~lWn~~La~FSi~g~lr~~~~~~~~~~~ 100 (282)
T KOG3072|consen 25 GFDSESVVKFFQEHWPLSIHISIAYLVLIFGGQNFM---K-NRKPFQLTKPLNLWNFCLAAFSILGALRTIPEFLAVFRA 100 (282)
T ss_pred CCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH---h-cCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444555 567788999999999999998777 7 99999 999999999999999999887776654 3
Q ss_pred CCeeeeeecCCCCCCCCchhHHHHHHHHhhhhhhcchhhhhhcCCCccceeEEEeechhhhhhhhhhccccccchhHHHH
Q 023144 110 PTIQYIICFPRNTKPNGPLFFWGYMFYLSKIYEYGDTLLILVSNPIKRLSFLHVYHHTIVVIMCYLGVHYAQSSLPLVVL 189 (286)
Q Consensus 110 ~~~~~~~C~~~~~~~~~~~~~~~~~f~lSK~~El~DTvf~VLRKK~~qlsFLHvYHH~~~~~~~w~~~~~~~~~~~~~~~ 189 (286)
+|+..+.|++.+.. .+..++|+|+|.+||+.|++||+|+|||| ||++|||||||+++++++|..+....+.++|++.
T Consensus 101 ~Gf~~s~C~~~~~~-~~~~~fW~~~fvlSK~~ElgDT~FiVLRK--rPliFlHWYHHi~~~iy~~~~y~~~~a~~rw~i~ 177 (282)
T KOG3072|consen 101 AGFKGSYCDANNLG-LSVSGFWSWLFVLSKAPELGDTIFIVLRK--RPLIFLHWYHHILVLIYAWHSYIEKVAWGRWFIW 177 (282)
T ss_pred hhhheeeeecccCC-cchHHHHHHHHHHHhhhhhhceeEEEecc--CccEEEechhhheeeeeeeeecccCCcCceEEEE
Confidence 47888899876422 25779999999999999999999999999 9999999999999999999999888888888899
Q ss_pred HHHHHHHHHHHHHHHHHhCCCc-c-cccccccccchhhHHHHHHHHhhhhhcccCC-CCCch-HHHHHHHHHHHHHHHHH
Q 023144 190 TNCLVHVLMYFYYLLCALGFKP-K-WKRLVTDCQILQFLSSFVIFSLIFGYHFTTS-GCAGI-MSCCFSATFIITLLYLF 265 (286)
Q Consensus 190 ~Ns~VHviMY~YY~lsa~g~~~-~-wKk~IT~lQivQFvi~~~~~~~~~~~~~~~~-~C~~~-~~~~~~~~~~~s~l~LF 265 (286)
+|.+||++||+||+++|+|+|+ + ..+.||.+||+||++++..+..+.+....++ +|... ....++++++++|++||
T Consensus 178 mNy~vHa~MY~YY~lrsl~ir~Pk~vam~iTtlQi~Qm~i~~~i~~~v~~~~~~~~~~c~~s~~~~~l~~~my~syfvLf 257 (282)
T KOG3072|consen 178 MNYLVHAFMYSYYALRSLGIRLPKSVAMAITTLQIVQMVIGCYIGTHVYYVKHTHQLLCQQSYKNLSLCFLMYISYFVLF 257 (282)
T ss_pred EehhHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHheeeEEEEEEecCCeeeeeeccchhhHHHHHHHHHHHH
Confidence 9999999999999999999994 3 4589999999999999988876655443322 38864 55667788999999999
Q ss_pred HHHhHhhcCCC
Q 023144 266 FDFHSKNYSAK 276 (286)
Q Consensus 266 ~~Fy~ksY~k~ 276 (286)
+|||+++|+++
T Consensus 258 ~~Ff~~aYi~~ 268 (282)
T KOG3072|consen 258 ANFFYQAYIKK 268 (282)
T ss_pred HHHHHHHHhhh
Confidence 99999999987
No 5
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.84 E-value=1.4e+02 Score=23.94 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=33.9
Q ss_pred CCChhHHHHHHHHHHHHHhhccccccccccccCchhHHHHHHHHHHHHHHHHHhhhh
Q 023144 47 GSSPQFLTLTVLSYLSLTFLLYQVPISLEYHLRQRIAVVHNLFLITASSIMALGSSL 103 (286)
Q Consensus 47 ~~s~~~~~~i~~~Yl~~V~~l~~~m~~m~~~rkp~~l~~~N~~l~~~S~~~~~~~~~ 103 (286)
++||++.+..++..++.+..--..+...+ =.|++.++-|+++++..++.+--++.
T Consensus 1 ~GS~~Fi~~~~~~~~~Wi~~N~~~~~~~~--fDpyPFilLnl~lS~~Aa~~ap~Ilm 55 (108)
T PF06210_consen 1 GGSWTFIIIFTVFLAVWILLNILAPPRPA--FDPYPFILLNLVLSLEAAYQAPLILM 55 (108)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhccccCC--CCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 46888887777766666543211220001 12335788999999999987765553
No 6
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=18.85 E-value=3.5e+02 Score=26.13 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHhCCC
Q 023144 187 VVLTNCLVHVLMYFY-----YLLCALGFK 210 (286)
Q Consensus 187 ~~~~Ns~VHviMY~Y-----Y~lsa~g~~ 210 (286)
+.+.=++|+.+=|-| |-+.|+|-+
T Consensus 216 f~~~~~~vq~lQ~~YQ~~~Ly~l~AlG~~ 244 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQRGCLYRLRALGKR 244 (330)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhccC
Confidence 456677777777777 789999987
No 7
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=16.30 E-value=1.3e+02 Score=28.34 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=37.1
Q ss_pred ccccccchhhHHHHHHHHhhhhhcccCCCCC-ch-HHHH--HH-HHHH-HHHHHHHHHHhHhhcCCCCCCccccc
Q 023144 216 LVTDCQILQFLSSFVIFSLIFGYHFTTSGCA-GI-MSCC--FS-ATFI-ITLLYLFFDFHSKNYSAKAGTKDQIK 284 (286)
Q Consensus 216 ~IT~lQivQFvi~~~~~~~~~~~~~~~~~C~-~~-~~~~--~~-~~~~-~s~l~LF~~Fy~ksY~k~~~~~~~~~ 284 (286)
+.|-+|++||+..++...+. -|. .- ++-+ .. .... .+....|.--|.+=|.+.-+|++++|
T Consensus 199 Wkky~t~vQlvqf~~~~~~~--------~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~LF~nFY~~tY~k~~~~~ 265 (274)
T KOG3071|consen 199 WKKYITIVQLVQFLILFVHT--------LYVHLFKPGCCFGIGAWAFNGSVINVSFLLLFSNFYIKTYKKPKKKK 265 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------hheeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 45888888888887764432 243 11 1222 22 3333 56678888888899988765544444
No 8
>COG4420 Predicted membrane protein [Function unknown]
Probab=14.42 E-value=4.3e+02 Score=23.54 Aligned_cols=54 Identities=24% Similarity=0.091 Sum_probs=36.1
Q ss_pred CCCChhHHHHHHHHHHHHHhhccccccccccccCch---hHHHHHHHHHHHHHHHHHhhhhh
Q 023144 46 LGSSPQFLTLTVLSYLSLTFLLYQVPISLEYHLRQR---IAVVHNLFLITASSIMALGSSLS 104 (286)
Q Consensus 46 ~~~s~~~~~~i~~~Yl~~V~~l~~~m~~m~~~rkp~---~l~~~N~~l~~~S~~~~~~~~~~ 104 (286)
+.+||++++.-+++.++.+.. ...- . -+.|+ +.++-|+++++.+++-+--++.+
T Consensus 54 f~Gsw~fil~~~~~ll~Wi~l-Nl~~---~-~~~~wDpyPFi~LnLllS~~AaiqAp~IlmS 110 (191)
T COG4420 54 FGGSWAFILTFTLLLLLWIVL-NLFL---V-PGLAWDPYPFILLNLLLSTLAAIQAPLILMS 110 (191)
T ss_pred HcCChHHHHHHHHHHHHHHHH-HHhh---h-cCCcCCCccHHHHHHHHHHHHHHHHhHHHHH
Confidence 358999998888887777753 1111 1 12333 56888999999999877655543
No 9
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=12.81 E-value=1.9e+02 Score=20.92 Aligned_cols=15 Identities=20% Similarity=0.396 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhH
Q 023144 256 TFIITLLYLFFDFHS 270 (286)
Q Consensus 256 ~~~~s~l~LF~~Fy~ 270 (286)
+..+||++||++|=+
T Consensus 13 VLLISfiIlfgRl~Y 27 (59)
T PF11119_consen 13 VLLISFIILFGRLIY 27 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 457799999997654
No 10
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=12.55 E-value=6.1e+02 Score=23.74 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=17.8
Q ss_pred ccCch-----hHHHHHHHHHHHHHHHHHh
Q 023144 77 HLRQR-----IAVVHNLFLITASSIMALG 100 (286)
Q Consensus 77 ~rkp~-----~l~~~N~~l~~~S~~~~~~ 100 (286)
.||.| ++.+=|..|++.|+....+
T Consensus 188 ar~SFY~Y~~~L~~LN~~q~~Gs~Ll~~~ 216 (261)
T PF10160_consen 188 ARPSFYRYVGILFLLNLLQSIGSGLLGYG 216 (261)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666 7788899988888776554
Done!