Query 023144
Match_columns 286
No_of_seqs 150 out of 1145
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:04:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_C SEC61BETA, protein tran 12.1 1.3E+02 0.0046 22.7 2.6 26 48-73 68-93 (96)
2 2hcn_A RNA-directed RNA polyme 7.9 1E+02 0.0034 30.5 0.6 30 16-51 500-529 (595)
3 2j7u_A RNA dependent RNA polym 7.7 1.1E+02 0.0036 30.6 0.6 30 16-51 540-569 (635)
4 1rh5_C Secbeta; protein transl 7.0 3.9E+02 0.013 17.8 3.1 33 25-68 16-48 (53)
5 1d4b_A CIDE B, human cell deat 6.0 68 0.0023 25.4 -1.4 23 144-166 95-121 (122)
6 3arc_L Photosystem II reaction 6.0 5.6E+02 0.019 15.8 3.3 21 250-270 16-36 (37)
7 4b9f_A Cellulosomal-scaffoldin 5.6 1.1E+02 0.0038 24.7 -0.4 20 13-32 27-46 (152)
8 2wb6_A AFV1-102; archaeal viru 4.8 1.9E+02 0.0065 21.9 0.5 14 140-153 40-53 (130)
9 1rkl_A Dolichyl-diphosphooligo 4.1 6.1E+02 0.021 15.6 2.3 17 217-233 2-18 (36)
10 2ww9_C Protein transport prote 4.0 5.8E+02 0.02 18.8 2.6 24 48-71 59-82 (87)
No 1
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=12.12 E-value=1.3e+02 Score=22.71 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.2
Q ss_pred CChhHHHHHHHHHHHHHhhccccccc
Q 023144 48 SSPQFLTLTVLSYLSLTFLLYQVPIS 73 (286)
Q Consensus 48 ~s~~~~~~i~~~Yl~~V~~l~~~m~~ 73 (286)
-+|..++.+.+++.++|+.|..+-|+
T Consensus 68 V~P~~VLv~sl~Fi~~Vi~Lhi~~K~ 93 (96)
T 2wwb_C 68 VGPVPVLVMSLLFIASVFMLHIWGKY 93 (96)
T ss_dssp CSSCSHHHHHHHHHHHHHHHSCSSSC
T ss_pred ECCEEehhhHHHHHHHHHHHHHhhhh
Confidence 36888999999999999998766543
No 2
>2hcn_A RNA-directed RNA polymerase (NS5); WEST-NIle virus RNA polymerase, structural genomics, marseil structural genomics program @ AFMB, MSGP, vizier; 2.35A {Kunjin virus} PDB: 2hcs_A 2hfz_A
Probab=7.94 E-value=1e+02 Score=30.51 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=22.8
Q ss_pred hhhhhhccccchhhccCCCccccccccCCCCCCChh
Q 023144 16 TTAALLNIKPLYWLVNHPKILNFAWTQGETLGSSPQ 51 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~s~~ 51 (286)
|+.|.++.+++.|+.+||. -+|.+++.+|.
T Consensus 500 tteDML~VwNrVWI~dNp~------M~dKt~v~~W~ 529 (595)
T 2hcn_A 500 TTEDMLEVWNRVWIEENEW------MEDKTPVEKWS 529 (595)
T ss_dssp SSSCHHHHHHHHHTTTCTT------CCCCCCCCCGG
T ss_pred chHHHHHhhheeeeccCCc------ccCCccccccc
Confidence 5679999999999999994 45556655543
No 3
>2j7u_A RNA dependent RNA polymerase; nucleoside binding site, flavivirus, high-throughput assay, protein; HET: PGE; 1.85A {Dengue virus} PDB: 2j7w_A*
Probab=7.68 E-value=1.1e+02 Score=30.61 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=23.0
Q ss_pred hhhhhhccccchhhccCCCccccccccCCCCCCChh
Q 023144 16 TTAALLNIKPLYWLVNHPKILNFAWTQGETLGSSPQ 51 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~s~~ 51 (286)
|+.|.++.+++.|+.+||. -+|.+++.+|.
T Consensus 540 ttedML~VwNrVWi~~Np~------M~dKt~v~~W~ 569 (635)
T 2j7u_A 540 TTEDMLTVWNRVWIEENPW------MEDKTPVTTWE 569 (635)
T ss_dssp SSSCHHHHHHHHHTTSCTT------CCCCCCCCCGG
T ss_pred chHHHHHhhheeeeccCCc------ccCCccccccc
Confidence 5789999999999999994 45556655544
No 4
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=7.00 E-value=3.9e+02 Score=17.77 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=20.9
Q ss_pred cchhhccCCCccccccccCCCCCCChhHHHHHHHHHHHHHhhcc
Q 023144 25 PLYWLVNHPKILNFAWTQGETLGSSPQFLTLTVLSYLSLTFLLY 68 (286)
Q Consensus 25 ~~~~~~~~p~~~~f~~~~~~~~~~s~~~~~~i~~~Yl~~V~~l~ 68 (286)
.||+..|.|.+ =-+|..++.+.+++.++|..+.
T Consensus 16 vryy~ee~~gi-----------Ki~P~~Vl~~si~~i~~V~~L~ 48 (53)
T 1rh5_C 16 IRYMDETFSKI-----------RVKPEHVIGVTVAFVIIEAILT 48 (53)
T ss_dssp -----CCCCSC-----------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccCCcc-----------ccCCeehhhhHHHHHHHHHHHH
Confidence 56666666522 1379999999999999998764
No 5
>1d4b_A CIDE B, human cell death-inducing effector B; alpha/beta roll, apoptosis; NMR {Homo sapiens} SCOP: d.15.2.1
Probab=6.01 E-value=68 Score=25.39 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=16.0
Q ss_pred cchhhhhhcCCCc----cceeEEEeec
Q 023144 144 GDTLLILVSNPIK----RLSFLHVYHH 166 (286)
Q Consensus 144 ~DTvf~VLRKK~~----qlsFLHvYHH 166 (286)
-||.|++|++.++ +...||--||
T Consensus 95 ~nT~lmvL~~gq~W~p~~~~~~~~~~~ 121 (122)
T 1d4b_A 95 DDTCLMVLQSGQSWSPTRSGVLHHHHH 121 (122)
T ss_dssp SCCCCCEECSSCCCCCCCCSCCTTCCC
T ss_pred CCCEEEEecCCCcccCCCcceeeeccC
Confidence 6899999999652 3455665554
No 6
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=5.96 E-value=5.6e+02 Score=15.77 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 023144 250 SCCFSATFIITLLYLFFDFHS 270 (286)
Q Consensus 250 ~~~~~~~~~~s~l~LF~~Fy~ 270 (286)
...+++......-+||.++|.
T Consensus 16 SLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 16 SLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhcc
Confidence 344555666777889999875
No 7
>4b9f_A Cellulosomal-scaffolding protein A; sugar binding protein, cellulosome; 1.19A {Clostridium thermocellum atcc 27405} PDB: 1nbc_A
Probab=5.61 E-value=1.1e+02 Score=24.68 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=16.1
Q ss_pred ccchhhhhhccccchhhccC
Q 023144 13 NTTTTAALLNIKPLYWLVNH 32 (286)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ 32 (286)
+.+.|.+|++++.|||....
T Consensus 27 ~g~~~i~LsdlkiRYyfT~d 46 (152)
T 4b9f_A 27 TGSSAIDLSKLTLRYYYTVD 46 (152)
T ss_dssp CSSSCEEGGGEEEEEEECCS
T ss_pred CCCCccccccEEEEEEEecC
Confidence 34678999999999997543
No 8
>2wb6_A AFV1-102; archaeal virus, viral protein; 1.95A {Acidianus filamentous virus 1}
Probab=4.84 E-value=1.9e+02 Score=21.89 Aligned_cols=14 Identities=14% Similarity=0.586 Sum_probs=12.6
Q ss_pred hhhhcchhhhhhcC
Q 023144 140 IYEYGDTLLILVSN 153 (286)
Q Consensus 140 ~~El~DTvf~VLRK 153 (286)
..||+|..|+|..|
T Consensus 40 msefldsmflviek 53 (130)
T 2wb6_A 40 MSEFLDSMFLVIEK 53 (130)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 46999999999988
No 9
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=4.05 E-value=6.1e+02 Score=15.58 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=12.1
Q ss_pred cccccchhhHHHHHHHH
Q 023144 217 VTDCQILQFLSSFVIFS 233 (286)
Q Consensus 217 IT~lQivQFvi~~~~~~ 233 (286)
||--|+-+|...++.+.
T Consensus 2 IsD~qL~~lan~lG~~~ 18 (36)
T 1rkl_A 2 ISDEQLNSLAITFGIVM 18 (36)
T ss_dssp CSSCGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 67778888877766554
No 10
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=4.01 E-value=5.8e+02 Score=18.78 Aligned_cols=24 Identities=4% Similarity=0.081 Sum_probs=18.3
Q ss_pred CChhHHHHHHHHHHHHHhhccccc
Q 023144 48 SSPQFLTLTVLSYLSLTFLLYQVP 71 (286)
Q Consensus 48 ~s~~~~~~i~~~Yl~~V~~l~~~m 71 (286)
-+|..++.+.++|..+|+.+..+-
T Consensus 59 V~P~~VLv~sl~FIa~VilLHI~g 82 (87)
T 2ww9_C 59 VDSLVVLFLSVGFIFSVIALHLLT 82 (87)
T ss_dssp CCHHHHHHHHHHHHHHHHHC----
T ss_pred EcCeeehhhHHHHHHHHHHHHHhh
Confidence 479999999999999999886543
Done!