Query 023144
Match_columns 286
No_of_seqs 150 out of 1145
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 17:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023144.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023144hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 11.9 32 0.0023 20.1 0.7 13 143-155 17-29 (37)
2 d1d4ba_ d.15.2.1 (A:) Cell dea 8.6 20 0.0014 26.6 -1.4 12 145-156 96-107 (122)
3 d1q90a3 f.23.23.1 (A:248-292) 7.1 30 0.0022 21.0 -0.8 12 143-154 16-27 (45)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 7.0 2.3E+02 0.016 16.0 3.3 20 251-270 17-36 (37)
5 d1nbca_ b.2.2.2 (A:) Cellusoma 4.5 70 0.0051 24.1 -0.4 20 13-32 27-46 (155)
6 d1g43a_ b.2.2.2 (A:) Cellusoma 3.2 1E+02 0.0075 23.2 -0.5 23 13-35 31-53 (160)
7 d1khva_ e.8.1.4 (A:) Viral RNA 2.9 4.5E+02 0.033 22.6 3.6 22 181-202 303-324 (497)
8 d2axtf1 f.23.38.1 (F:11-45) Cy 2.8 97 0.0071 17.4 -0.7 9 216-224 26-34 (35)
9 d1ibxa_ d.15.2.1 (A:) Caspase- 2.7 1.2E+02 0.009 20.3 -0.4 11 145-155 66-76 (81)
10 d1c9fa_ d.15.2.1 (A:) Caspase- 2.7 1.2E+02 0.0086 20.8 -0.6 11 145-155 69-79 (87)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.95 E-value=32 Score=20.08 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=9.6
Q ss_pred hcchhhhhhcCCC
Q 023144 143 YGDTLLILVSNPI 155 (286)
Q Consensus 143 l~DTvf~VLRKK~ 155 (286)
.+--+++||+||+
T Consensus 17 ~laQi~lVlKKKQ 29 (37)
T d1vf5c3 17 MLAQLMLILKKKQ 29 (37)
T ss_dssp HHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHH
Confidence 4556799999943
No 2
>d1d4ba_ d.15.2.1 (A:) Cell death-inducing effector B (CIDE-B), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=20 Score=26.59 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=10.2
Q ss_pred chhhhhhcCCCc
Q 023144 145 DTLLILVSNPIK 156 (286)
Q Consensus 145 DTvf~VLRKK~~ 156 (286)
||+|++|++.++
T Consensus 96 nT~lmvL~~gqk 107 (122)
T d1d4ba_ 96 DTCLMVLQSGQS 107 (122)
T ss_dssp CCCCCEECSSCC
T ss_pred CCEEEEECCCCc
Confidence 799999999664
No 3
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.15 E-value=30 Score=20.98 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=9.3
Q ss_pred hcchhhhhhcCC
Q 023144 143 YGDTLLILVSNP 154 (286)
Q Consensus 143 l~DTvf~VLRKK 154 (286)
.+--+|+||+||
T Consensus 16 ~laQi~LVLKKK 27 (45)
T d1q90a3 16 LLTQVLLVLKKK 27 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456789999994
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.99 E-value=2.3e+02 Score=15.99 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 023144 251 CCFSATFIITLLYLFFDFHS 270 (286)
Q Consensus 251 ~~~~~~~~~s~l~LF~~Fy~ 270 (286)
..+++......-+||.++|.
T Consensus 17 Ly~GlLlifvl~vLFssYfF 36 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455556667789998875
No 5
>d1nbca_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin {Clostridium thermocellum [TaxId: 1515]}
Probab=4.48 E-value=70 Score=24.13 Aligned_cols=20 Identities=10% Similarity=0.220 Sum_probs=16.8
Q ss_pred ccchhhhhhccccchhhccC
Q 023144 13 NTTTTAALLNIKPLYWLVNH 32 (286)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ 32 (286)
+.+.|.+|.+.+.|||....
T Consensus 27 ~g~~~i~Lsdlk~RYyft~d 46 (155)
T d1nbca_ 27 TGSSAIDLSKLTLRYYYTVD 46 (155)
T ss_dssp CSSSCEEGGGEEEEEEECCS
T ss_pred CCCCccccCcEEEEEEEecC
Confidence 45789999999999997654
No 6
>d1g43a_ b.2.2.2 (A:) Cellusomal scaffolding protein A, scaffoldin {Clostridium cellulolyticum [TaxId: 1521]}
Probab=3.17 E-value=1e+02 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=18.2
Q ss_pred ccchhhhhhccccchhhccCCCc
Q 023144 13 NTTTTAALLNIKPLYWLVNHPKI 35 (286)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~p~~ 35 (286)
+++.|.+|.+.+.|||.......
T Consensus 31 ~g~~p~~lsdl~~RYyft~d~~~ 53 (160)
T d1g43a_ 31 TSGSPINLADLKLRYYYTQDADK 53 (160)
T ss_dssp CSSSCEEGGGEEEEEEECCSSCC
T ss_pred CCCCCcccCceEEEEEEcccccc
Confidence 45789999999999997765433
No 7
>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
Probab=2.85 E-value=4.5e+02 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=16.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 023144 181 QSSLPLVVLTNCLVHVLMYFYY 202 (286)
Q Consensus 181 ~~~~~~~~~~Ns~VHviMY~YY 202 (286)
.|++...+++||++|.||..|=
T Consensus 303 PSG~p~Tsi~NSi~N~i~i~~a 324 (497)
T d1khva_ 303 PSGMPFTSVINSICHWLLWSAA 324 (497)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHH
T ss_pred CCCCceeehhhhHHHHHHHHHH
Confidence 4556677899999999876553
No 8
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.81 E-value=97 Score=17.44 Aligned_cols=9 Identities=22% Similarity=0.390 Sum_probs=4.3
Q ss_pred ccccccchh
Q 023144 216 LVTDCQILQ 224 (286)
Q Consensus 216 ~IT~lQivQ 224 (286)
.||.||.+|
T Consensus 26 ai~aMqfiq 34 (35)
T d2axtf1 26 AIAAMQFIQ 34 (35)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHhh
Confidence 344555444
No 9
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.73 E-value=1.2e+02 Score=20.35 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=8.3
Q ss_pred chhhhhhcCCC
Q 023144 145 DTLLILVSNPI 155 (286)
Q Consensus 145 DTvf~VLRKK~ 155 (286)
||+|++|++.+
T Consensus 66 nT~lm~L~~ge 76 (81)
T d1ibxa_ 66 NAELVLLTLGQ 76 (81)
T ss_dssp CCCEEEECSSS
T ss_pred CcEEEEECCCC
Confidence 67888888844
No 10
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.71 E-value=1.2e+02 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=8.6
Q ss_pred chhhhhhcCCC
Q 023144 145 DTLLILVSNPI 155 (286)
Q Consensus 145 DTvf~VLRKK~ 155 (286)
||+|++|++.+
T Consensus 69 nT~lm~L~~gq 79 (87)
T d1c9fa_ 69 DAELLLLTAGE 79 (87)
T ss_dssp TEEEEEECTTC
T ss_pred CCEEEEECCCC
Confidence 68888998844
Done!