Query 023147
Match_columns 286
No_of_seqs 135 out of 243
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:46:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3094 Predicted membrane pro 100.0 1.5E-83 3.2E-88 587.3 21.7 258 15-279 10-284 (284)
2 PF03878 YIF1: YIF1; InterPro 100.0 4.7E-79 1E-83 558.0 20.4 218 56-278 11-240 (240)
3 COG5197 Predicted membrane pro 100.0 4.6E-61 1E-65 432.1 19.4 215 58-277 57-283 (284)
4 KOG3114 Uncharacterized conser 98.7 7.3E-07 1.6E-11 84.4 15.1 149 81-249 79-246 (290)
5 KOG3103 Rab GTPase interacting 96.0 0.024 5.3E-07 52.8 7.3 126 87-241 89-221 (249)
6 COG5080 YIP1 Rab GTPase intera 95.1 0.17 3.8E-06 46.5 9.6 120 93-241 72-198 (227)
7 PF04893 Yip1: Yip1 domain; I 95.0 0.18 4E-06 41.7 8.6 90 129-219 18-120 (172)
8 KOG2946 Uncharacterized conser 89.7 12 0.00027 34.9 13.5 103 89-215 70-172 (234)
9 KOG3472 Predicted small membra 57.5 5.6 0.00012 33.2 1.2 53 49-111 13-66 (112)
10 KOG2568 Predicted membrane pro 57.3 2E+02 0.0044 30.0 12.6 137 138-279 201-360 (518)
11 PF06679 DUF1180: Protein of u 42.2 35 0.00076 30.3 3.9 24 222-245 96-119 (163)
12 PF12129 Phtf-FEM1B_bdg: Male 39.3 11 0.00023 33.5 0.2 44 167-219 97-142 (159)
13 PF05512 AWPM-19: AWPM-19-like 30.7 1.2E+02 0.0026 26.5 5.2 53 138-190 49-109 (142)
14 CHL00105 psaJ photosystem I su 20.3 79 0.0017 22.2 1.8 26 138-164 12-37 (42)
15 PRK02733 photosystem I reactio 20.2 82 0.0018 22.2 1.9 27 138-165 12-38 (42)
No 1
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.5e-83 Score=587.29 Aligned_cols=258 Identities=50% Similarity=0.890 Sum_probs=242.0
Q ss_pred hhhhhcCCCCCCCCCCCCCCCCCCCCCCccccccchhhhhhHh---------hhHHHHHhhhhHHHHhhhhhhcc--CCc
Q 023147 15 EMYSNMGTQPGPGMPRPAADAQPNPFGNAFYGAGSGLIRGGLG---------AYGEKILGSSSEYVQSNISRYFS--DPQ 83 (286)
Q Consensus 15 ~~y~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~yG~~~~~~g~~yvq~n~~~y~s--~lk 83 (286)
.++++.+|+ +++++|+-.|.++|+||+.+|.|++..+.+++ +|||+++++|+||||+|++||++ ++|
T Consensus 10 ~~~~~~~p~--a~~p~p~~dp~~Gp~g~~~~G~g~~~~~~~l~g~~~a~~~~~~Gk~~~~~~~E~v~~~~~k~~~~~~l~ 87 (284)
T KOG3094|consen 10 PDPNHAGPA--APMPVPQFDPTPGPFGNPVTGAGAGFPVQGLGGSPMADMAMAYGKKIAGQGKEYVEKNLGKYVSVPKLK 87 (284)
T ss_pred CCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccce
Confidence 456777777 66777776788889999999999988888887 99999999999999999999997 789
Q ss_pred ceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhh
Q 023147 84 YYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEA 163 (286)
Q Consensus 84 yYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~ 163 (286)
|||+|||+||.|||++|+|||+||+ |+|+.| +++++|||+|+||||||||+|||+||||++|+.+|++|+|+||.
T Consensus 88 yYF~Vdn~YV~~KL~lilfPf~hk~-W~~~~~----~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~ 162 (284)
T KOG3094|consen 88 YYFAVDNAYVGKKLKLILFPFLHKD-WTRIYE----RESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEA 162 (284)
T ss_pred EEEEechHHHhhhheEEEeeecCcc-hhhhhc----ccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHH
Confidence 9999999999999999999999995 999988 34699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCcceeeeecccchhhHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHH
Q 023147 164 LNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-SYSYYFLILWMCMCMGVFLVK 241 (286)
Q Consensus 164 Lg~~~S~~l~~~~lEv~ilk~~~Y~l~-~~~~~~lDllAysGYKyV~ii~~ll~~l~~-~~~yy~~~ly~~~a~~~Fl~R 241 (286)
||+.+|+++++|++|++++|+++|+++ +++.+++|++||+|||||++|++.+.++++ .+.||+++.|+++|.++||+|
T Consensus 163 Lg~~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~~~yyi~~~yt~~a~gvFLlR 242 (284)
T KOG3094|consen 163 LGILASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGPYGYYIALAYTYLAFGVFLLR 242 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999986 599999999999999999999
Q ss_pred HHHHHhhhhccccC----CccceeehhHHHHHHHHHHHHHhh
Q 023147 242 TMKRVLFAEMRTHD----SSRHHYLLIFIAFAQLPLFLWLGN 279 (286)
Q Consensus 242 tLk~~~l~e~~~~~----~~r~~yfl~~ia~~Q~~l~~wL~~ 279 (286)
|||+.+++|.+..+ ++||+||||++|++|+++++||++
T Consensus 243 SlK~~ll~~~~~~~~v~q~~r~~YfLf~ia~~Q~~~l~wLs~ 284 (284)
T KOG3094|consen 243 SLKRALLAESSMADPVPQSSRRLYFLFFIAAVQFLILYWLSN 284 (284)
T ss_pred HHHHHHcCCccccCccchhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 99999999988766 899999999999999999999974
No 2
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=100.00 E-value=4.7e-79 Score=558.03 Aligned_cols=218 Identities=45% Similarity=0.894 Sum_probs=205.6
Q ss_pred HhhhHHHHHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCC
Q 023147 56 LGAYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAP 133 (286)
Q Consensus 56 ~~~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAP 133 (286)
.++|||+++++|+||||||++||++ ++||||||||+||+|||++|+|||+|| +|+|+.| +++++|||+|+|||
T Consensus 11 ~~q~G~~~~~~g~~~v~~~~~~~~~~~~lk~YF~V~n~YV~~KL~lllfPf~~k-~W~r~~~----~~~~~~Pr~DvNAP 85 (240)
T PF03878_consen 11 AMQYGQSALNQGQEYVQKNLGRYVSVSSLKYYFAVDNSYVLKKLKLLLFPFLHK-DWSRKYE----QESYLPPREDVNAP 85 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcccceeeEECCHHHHHHHHHHeecccccC-Ccccccc----ccCCCCchhhccCc
Confidence 3599999999999999999999997 799999999999999999999999999 6999987 34689999999999
Q ss_pred CcccchhHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCcceeeeecccchhhHHH
Q 023147 134 DLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCL 212 (286)
Q Consensus 134 DLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~S~~l~~~~lEv~ilk~~~Y~l~-~~~~~~lDllAysGYKyV~ii~ 212 (286)
|||||+||++||||++|+.+|++|+||||.||.++|+++++|++|++++|+++|+++ +++.+++|++||+|||||++|+
T Consensus 86 DLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~ 165 (240)
T PF03878_consen 86 DLYIPLMAFVTYILLSGLILGLQGRFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIIL 165 (240)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 5899999999999999999999
Q ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc-------CCccceeehhHHHHHHHHHHHHHh
Q 023147 213 AVLGRIVF-SYSYYFLILWMCMCMGVFLVKTMKRVLFAEMR-TH-------DSSRHHYLLIFIAFAQLPLFLWLG 278 (286)
Q Consensus 213 ~ll~~l~~-~~~yy~~~ly~~~a~~~Fl~RtLk~~~l~e~~-~~-------~~~r~~yfl~~ia~~Q~~l~~wL~ 278 (286)
+++++++. +++||++++|+++|+++|++||||+.++++.+ ++ +++||+|||+++|++|+|++||||
T Consensus 166 ~~l~~~l~~~~~yy~~~ly~~~a~~~Fl~RsLk~~i~~~~~~~~~~~~~~~~~~~r~yfL~~~a~~Q~~l~~wLt 240 (240)
T PF03878_consen 166 TLLASLLFGSWVYYIALLYTSFANAFFLLRSLKRVILPSPSSSYGSVSSSSQRKRRNYFLFFIAIVQPPLMFWLT 240 (240)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeehhHHHHHHHHHHHHHHhhC
Confidence 99999885 69999999999999999999999999996332 22 378999999999999999999996
No 3
>COG5197 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.6e-61 Score=432.13 Aligned_cols=215 Identities=34% Similarity=0.605 Sum_probs=197.5
Q ss_pred hhHHHHHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCc
Q 023147 58 AYGEKILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDL 135 (286)
Q Consensus 58 ~yG~~~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDL 135 (286)
.-||.++++++|||+|++++..+ .+++||+|||+||.+||++|+|||++| +|+|..+. ++|+|||||+|+|||
T Consensus 57 ~iGk~a~n~~qEyv~k~~g~~~s~~~~~tYF~V~n~yVi~KL~LIlfPf~nk-~W~r~gd~----eg~~pp~~d~nsPdm 131 (284)
T COG5197 57 FIGKDAFNQFQEYVNKATGNAASSQQISTYFQVSNRYVINKLKLILFPFLNK-NWQRIGDS----EGFLPPRDDVNSPDM 131 (284)
T ss_pred HHhHHHHHHHHHHHHHhhcccccccceeEEEEechHhHHhhhheEEeecccc-hhhhccCC----CCCCCchhhcCCccc
Confidence 47999999999999999999997 799999999999999999999999999 79995443 459999999999999
Q ss_pred ccchhHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCcceeeeecccchhhHHHHH
Q 023147 136 YIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG-SGEAPLLDVVAYAGYTFTGLCLAV 214 (286)
Q Consensus 136 YIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~S~~l~~~~lEv~ilk~~~Y~l~-~~~~~~lDllAysGYKyV~ii~~l 214 (286)
|+|+|+|+|||||++..+|++|.|+||.||..+|+++++..+|+++.|+++|+++ +...+++|++||+|||||+++++-
T Consensus 132 Y~P~M~fvtyILl~~~~~GL~g~F~PE~lg~~~s~~~a~v~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~q 211 (284)
T COG5197 132 YMPIMGFVTYILLWNTQQGLKGSFNPEDLGYKLSSTLAFVCVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQ 211 (284)
T ss_pred cchHHHHHHHHHHHHHHhhcccCCCHHHhhHHHHHHHHHHHHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 556779999999999999999998
Q ss_pred HHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--------ccCCccceeehhHHHHHHHHHHHHH
Q 023147 215 LGRIVF-SYSYYFLILWMCMCMGVFLVKTMKRVLFAEMR--------THDSSRHHYLLIFIAFAQLPLFLWL 277 (286)
Q Consensus 215 l~~l~~-~~~yy~~~ly~~~a~~~Fl~RtLk~~~l~e~~--------~~~~~r~~yfl~~ia~~Q~~l~~wL 277 (286)
+.+.+. .|.--+...|..+|.++||+||+|+.++++.. +++++||+||||++++.|..+||-|
T Consensus 212 L~k~~~Mp~v~~i~~~Ylyiaf~vFLlRSlK~~vl~~s~~~i~asis~~~r~rr~YfLF~i~i~Q~~~m~ll 283 (284)
T COG5197 212 LLKNVTMPFVLNILIFYLYIAFGVFLLRSLKFNVLSRSGAEIHASISKSTRKRRNYFLFVIFIWQNVLMWLL 283 (284)
T ss_pred HhhhccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccceeeeeechhhhhheeeeeehHHHHHHHHHHhh
Confidence 888874 67777778999999999999999999999753 2358999999999999998777655
No 4
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=7.3e-07 Score=84.38 Aligned_cols=149 Identities=23% Similarity=0.210 Sum_probs=93.6
Q ss_pred CCcceeeeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHh-------
Q 023147 81 DPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTL------- 153 (286)
Q Consensus 81 ~lkyYF~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~------- 153 (286)
-.|.|||||++-|++||+-.++| ++ -. .++. -+.||||-|+|...|-|-+.+...
T Consensus 79 yyq~fFdVDt~qV~~Rl~~SliP--~~--~~--~~~~------------~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~ 140 (290)
T KOG3114|consen 79 YYQPFFDVDTAQVRKRLKESLIP--RN--YV--RDQI------------QDNPDLYGPFWITATLVFALAISGNLATFIR 140 (290)
T ss_pred hhccccCCCHHHHHHHHHHhcCC--cc--cc--cccc------------CCCccccccHHHHHHHHHHHHHcccHHHHHH
Confidence 67999999999999999999999 22 11 1222 278999999999999887766543
Q ss_pred --hhcC-----CCChhhHHHHHHHHHHH-HHHHHHHHHHHHHhc---cCCCCCcceeeeecccchhhHHHHHHHHHhh-h
Q 023147 154 --GLQG-----KFTPEALNWLFIKGLFG-WFMQFMLLKVTLLSL---GSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF-S 221 (286)
Q Consensus 154 --G~~g-----~FsPE~Lg~~~S~~l~~-~~lEv~ilk~~~Y~l---~~~~~~~lDllAysGYKyV~ii~~ll~~l~~-~ 221 (286)
+.+| .|+ .+...++...+. |++++++.-+..+.= +..-..++|+++.-||.-...+-+++..++. +
T Consensus 141 ~~t~~g~~~g~~f~--~v~saa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~iv~~~ 218 (290)
T KOG3114|consen 141 NGTLKGTAYGYDFG--LVTSAATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWIVPSS 218 (290)
T ss_pred hccccceeeecccc--hHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHhccHH
Confidence 2233 355 121111111111 123433333222221 1223467899999999877766666666664 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023147 222 YSYYFLILWMCMCMGVFLVKTMKRVLFA 249 (286)
Q Consensus 222 ~~yy~~~ly~~~a~~~Fl~RtLk~~~l~ 249 (286)
++=|+...-.....+.||.+++.-.+..
T Consensus 219 ~~~wvl~~~~~~~S~~~L~~~l~p~~~~ 246 (290)
T KOG3114|consen 219 MVQWVLVGTALGLSGTFLAGTLWPAVRL 246 (290)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5556555555566678888888866543
No 5
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.024 Score=52.78 Aligned_cols=126 Identities=20% Similarity=0.252 Sum_probs=86.7
Q ss_pred eeChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhhHHH
Q 023147 87 QVNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNW 166 (286)
Q Consensus 87 ~VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~ 166 (286)
.+|-.-+++|-+.+|-|+++.+ . +=++.+||=-|+. ++|+.|..+=++||-|=-
T Consensus 89 gInf~hI~~KT~~VLnP~r~~~--q----------------~i~~d~DlaGPlv----f~L~f~~flLl~gKi~Fg---- 142 (249)
T KOG3103|consen 89 GINFDHIKQKTRAVLNPFRSAD--Q----------------SIMKDTDLAGPLV----FCLLFGLFLLLAGKIHFG---- 142 (249)
T ss_pred CCCHHHHHHHHhheecccccCc--e----------------EEecCcccccchH----HHHHHHHHHHhcCceEEE----
Confidence 5677889999999999998874 1 1146789988965 456666666677764422
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCcceeeeecccchhhHHHHHHHHHhh---hhHHH----HHHHHHHHHHHHHH
Q 023147 167 LFIKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF---SYSYY----FLILWMCMCMGVFL 239 (286)
Q Consensus 167 ~~S~~l~~~~lEv~ilk~~~Y~l~~~~~~~lDllAysGYKyV~ii~~ll~~l~~---~~~yy----~~~ly~~~a~~~Fl 239 (286)
....+|++-.+.+-..+-+|+.+++++....+..||.+.++++.-..+++. +.+-| +..+|++.|.+-++
T Consensus 143 ---yIygi~~~gsl~iy~L~nlm~~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lf 219 (249)
T KOG3103|consen 143 ---YIYGISLLGSLSIYFLLNLMSNKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLF 219 (249)
T ss_pred ---EEeeeHHHHHHHHHHHHHHHhhcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 222344455555555555566789999999999999999999887777663 22222 45577777766665
Q ss_pred HH
Q 023147 240 VK 241 (286)
Q Consensus 240 ~R 241 (286)
++
T Consensus 220 v~ 221 (249)
T KOG3103|consen 220 VS 221 (249)
T ss_pred HH
Confidence 55
No 6
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=95.13 E-value=0.17 Score=46.54 Aligned_cols=120 Identities=21% Similarity=0.379 Sum_probs=78.5
Q ss_pred HHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhhHHHHHHHHH
Q 023147 93 VRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLFIKGL 172 (286)
Q Consensus 93 V~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~S~~l 172 (286)
.++|...++-|+.||. - +-.+.-||--|+. |++|-++.+-+++| -..|...
T Consensus 72 i~~ks~~vl~p~~~~~------~------------~i~~d~DL~gPli----F~lL~sLfLsla~~---shFgyiy---- 122 (227)
T COG5080 72 IKSKSDDVLGPFDNKA------F------------DILADCDLWGPLI----FILLYSLFLSLAGK---SHFGYIY---- 122 (227)
T ss_pred cccccceeeecccccc------h------------hhhhcccccccHH----HHHHHHHHHHhccc---ceeehhh----
Confidence 5679999999998773 0 1135578888864 66777777777777 2222222
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcceeeeecccchhhHHHHHHHHHhh------hhHHHH-HHHHHHHHHHHHHHH
Q 023147 173 FGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVLGRIVF------SYSYYF-LILWMCMCMGVFLVK 241 (286)
Q Consensus 173 ~~~~lEv~ilk~~~Y~l~~~~~~~lDllAysGYKyV~ii~~ll~~l~~------~~~yy~-~~ly~~~a~~~Fl~R 241 (286)
++..+-.+.+.+.+-+++..+.++..-++..||.+.++++.-+.+++. .++.+. ...|+..|.+-++-+
T Consensus 123 ~islfg~lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~ 198 (227)
T COG5080 123 GISLFGTLSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKS 198 (227)
T ss_pred HHHHHHHHHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333344455556677778999999999999999998887766542 123333 356777776665543
No 7
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=94.95 E-value=0.18 Score=41.73 Aligned_cols=90 Identities=20% Similarity=0.202 Sum_probs=59.2
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHhhhcCCCChh---------hHHHH-HHHH---HHHHHHHHHHHHHHHHhccCCCCC
Q 023147 129 DINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPE---------ALNWL-FIKG---LFGWFMQFMLLKVTLLSLGSGEAP 195 (286)
Q Consensus 129 DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE---------~Lg~~-~S~~---l~~~~lEv~ilk~~~Y~l~~~~~~ 195 (286)
+.+.+|+|.++++.++.+...-......+.+.++ ..... .... ++.+++=..+++..+.+++ ++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~g-g~~~ 96 (172)
T PF04893_consen 18 ISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFIIILIGWFILALILHLIAKLFG-GKGS 96 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence 4578999999999999998877775444444433 11111 1111 1333344444455555555 7888
Q ss_pred cceeeeecccchhhHHHHHHHHHh
Q 023147 196 LLDVVAYAGYTFTGLCLAVLGRIV 219 (286)
Q Consensus 196 ~lDllAysGYKyV~ii~~ll~~l~ 219 (286)
+-|..+..||..++.++..+...+
T Consensus 97 ~~~~~~~~~ya~~P~~~~~~~~~~ 120 (172)
T PF04893_consen 97 FKETFSVVGYALIPLLLGSLISII 120 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988777654
No 8
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.72 E-value=12 Score=34.88 Aligned_cols=103 Identities=21% Similarity=0.310 Sum_probs=65.0
Q ss_pred ChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccchhHHHHHHHHHHHHhhhcCCCChhhHHHHH
Q 023147 89 NDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFTLGLQGKFTPEALNWLF 168 (286)
Q Consensus 89 dnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPlMafiTYILL~g~~~G~~g~FsPE~Lg~~~ 168 (286)
|-.-|..||+.+++|--.++ +.+. - +..=||.-|+--.+- .|+++-..+.+.-. ..+
T Consensus 70 D~~~I~~kl~~Vl~P~py~~-------dk~~-----~----lRDwDlWGPl~~~~~----la~iL~~s~~~~~~---~vF 126 (234)
T KOG2946|consen 70 DLRAIGSKLKHVLYPHPYFE-------DKGQ-----L----LRDWDLWGPLFFCVF----LALILSLSGSVKSA---SVF 126 (234)
T ss_pred HHHHHHhceEEEEccCCCcc-------cccc-----e----eecccccchhHHHHH----HHHHHHhhcCcccc---hhH
Confidence 45567889999999974331 1110 1 122388888653332 23333333333322 356
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCcceeeeecccchhhHHHHHH
Q 023147 169 IKGLFGWFMQFMLLKVTLLSLGSGEAPLLDVVAYAGYTFTGLCLAVL 215 (286)
Q Consensus 169 S~~l~~~~lEv~ilk~~~Y~l~~~~~~~lDllAysGYKyV~ii~~ll 215 (286)
++.+++|.+-.+++.+-.-+++ ++.++..-++..||--.+..++.+
T Consensus 127 s~vf~i~wfG~~vvtln~kLLG-gnIs~fQsl~IlGYCLfPl~v~al 172 (234)
T KOG2946|consen 127 AVVFAILWFGAVVVTLNIKLLG-GNISFFQSLCILGYCLFPLVVAAL 172 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CceeEEeehhhhhhcccHHHHHHH
Confidence 6666676666666666666777 689999999999999999887753
No 9
>KOG3472 consensus Predicted small membrane protein [Function unknown]
Probab=57.50 E-value=5.6 Score=33.15 Aligned_cols=53 Identities=26% Similarity=0.520 Sum_probs=40.4
Q ss_pred chhhhhhHhhhHHHHHhhhhHHHHhhhhhhccCCcceeeeChHH-HHHhhceeeccccccCCce
Q 023147 49 SGLIRGGLGAYGEKILGSSSEYVQSNISRYFSDPQYYFQVNDQY-VRNKLKVVLFPFLHRGHWT 111 (286)
Q Consensus 49 ~~~~~~g~~~yG~~~~~~g~~yvq~n~~~y~s~lkyYF~VdnsY-V~~KL~llLFPf~hk~~W~ 111 (286)
||++.-|+|+||+..+.+-+++=|++ .||+-|.| ..+-+.++-.|-.++..|+
T Consensus 13 sGa~AlglgaYgahvlk~~pd~~~~~----------~~dtA~~yh~~HSlAlma~P~~~~p~~t 66 (112)
T KOG3472|consen 13 SGAAALGLGAYGAHVLKDVPDPKELK----------SWDTANRYHFLHSLALMAVPVARKPLWT 66 (112)
T ss_pred hhHHHHhhhhhhhhhhhcCCCHHHHH----------HHHHHHHHHHHHHHHHHcCccccCcchh
Confidence 57788899999999887666654433 36777776 4678888889999997787
No 10
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=57.26 E-value=2e+02 Score=30.04 Aligned_cols=137 Identities=11% Similarity=0.030 Sum_probs=75.1
Q ss_pred chhHHH-----HHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHH--HHHHHHHHHHHhccCCCCCcceee-----eeccc
Q 023147 138 PFMAFG-----TYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWF--MQFMLLKVTLLSLGSGEAPLLDVV-----AYAGY 205 (286)
Q Consensus 138 PlMafi-----TYILL~g~~~G~~g~FsPE~Lg~~~S~~l~~~~--lEv~ilk~~~Y~l~~~~~~~lDll-----AysGY 205 (286)
|+|-|- .|+|+..+..=..=+|--|+|-.+-.-..++.+ +|.++...=....|....+..++. .-++=
T Consensus 201 Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K 280 (518)
T KOG2568|consen 201 PLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITAVIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIK 280 (518)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHH
Confidence 556554 455555555555668899999877654444444 788888777777774333222111 01111
Q ss_pred chhhHHHHHHHHH----h-h--h-hHH---HHHHHHHHHHHHHHHHHHHHHHhhhhccccCCccceeehhHHHHHHHHHH
Q 023147 206 TFTGLCLAVLGRI----V-F--S-YSY---YFLILWMCMCMGVFLVKTMKRVLFAEMRTHDSSRHHYLLIFIAFAQLPLF 274 (286)
Q Consensus 206 KyV~ii~~ll~~l----~-~--~-~~y---y~~~ly~~~a~~~Fl~RtLk~~~l~e~~~~~~~r~~yfl~~ia~~Q~~l~ 274 (286)
|=..-.+.+++++ + . + ... -+-.+|+.++-..+++|..... ....++-+.++.+-.|+....++
T Consensus 281 ~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~~~~g~~-----se~~~~~~lf~~ip~ai~d~~f~ 355 (518)
T KOG2568|consen 281 KTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLARVIGNI-----SELSSLLILFAALPLAILDAAFI 355 (518)
T ss_pred HHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHHHHhcCc-----ccccchhhHHHHHHHHHHHHHHH
Confidence 1111111111111 1 0 0 111 1456777888888888866421 12224446777778889999888
Q ss_pred HHHhh
Q 023147 275 LWLGN 279 (286)
Q Consensus 275 ~wL~~ 279 (286)
+|..+
T Consensus 356 ~wIF~ 360 (518)
T KOG2568|consen 356 YWIFI 360 (518)
T ss_pred HHHHH
Confidence 88654
No 11
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=42.21 E-value=35 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023147 222 YSYYFLILWMCMCMGVFLVKTMKR 245 (286)
Q Consensus 222 ~~yy~~~ly~~~a~~~Fl~RtLk~ 245 (286)
...|++...+++.+.+|++|++|.
T Consensus 96 R~~~Vl~g~s~l~i~yfvir~~R~ 119 (163)
T PF06679_consen 96 RALYVLVGLSALAILYFVIRTFRL 119 (163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455778888888999999999984
No 12
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=39.28 E-value=11 Score=33.46 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccC--CCCCcceeeeecccchhhHHHHHHHHHh
Q 023147 167 LFIKGLFGWFMQFMLLKVTLLSLGS--GEAPLLDVVAYAGYTFTGLCLAVLGRIV 219 (286)
Q Consensus 167 ~~S~~l~~~~lEv~ilk~~~Y~l~~--~~~~~lDllAysGYKyV~ii~~ll~~l~ 219 (286)
.+...++++++|++. +++|+... ...+..|+ ++++++.++++++
T Consensus 97 if~~ll~LY~lQv~~--v~lY~~~~~~~~v~~sEv-------~~Pi~LmLlLg~V 142 (159)
T PF12129_consen 97 IFMFLLLLYLLQVIA--VVLYFIDPEPHVVSASEV-------FGPICLMLLLGTV 142 (159)
T ss_pred HHHHHHHHHHHHHHH--HhheeecCccccCCHHHH-------HHHHHHHHHHHHh
Confidence 344566777788665 56677642 24444444 2566666555544
No 13
>PF05512 AWPM-19: AWPM-19-like family; InterPro: IPR008390 Members of this family are 19 kDa membrane proteins. The levels of the plant protein AWPM-19 increase dramatically when there is an increase level of abscisic acid. The increase presence of this protein leads to greater tolerance of freezing [].
Probab=30.72 E-value=1.2e+02 Score=26.53 Aligned_cols=53 Identities=19% Similarity=0.351 Sum_probs=42.8
Q ss_pred chhHHHHHHHHHHHH------hhhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023147 138 PFMAFGTYVVLAGFT------LGLQG--KFTPEALNWLFIKGLFGWFMQFMLLKVTLLSLG 190 (286)
Q Consensus 138 PlMafiTYILL~g~~------~G~~g--~FsPE~Lg~~~S~~l~~~~lEv~ilk~~~Y~l~ 190 (286)
..--|++|.|++|+. .|++. ..++|-|...++.+++.|.+-.+..-++|-=..
T Consensus 49 AT~ffv~faLlAgVVG~aS~l~G~~h~r~W~~~sLaaAaa~a~iAW~lTlLAmGlACKeI~ 109 (142)
T PF05512_consen 49 ATGFFVIFALLAGVVGAASVLAGLHHVRSWRSESLAAAAASALIAWALTLLAMGLACKEIH 109 (142)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHhHheee
Confidence 356688888888764 45554 488999999999999999999999988887554
No 14
>CHL00105 psaJ photosystem I subunit IX
Probab=20.34 E-value=79 Score=22.24 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHHHHhhhcCCCChhhH
Q 023147 138 PFMAFGTYVVLAGFTLGLQGKFTPEAL 164 (286)
Q Consensus 138 PlMafiTYILL~g~~~G~~g~FsPE~L 164 (286)
|+++.+-..+++|+...+ +||-||.|
T Consensus 12 PVla~~w~~~tag~lIEi-NRffPD~L 37 (42)
T CHL00105 12 PVLSTLWFGFLAGLLIEI-NRFFPDAL 37 (42)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhCChhh
Confidence 788888888888888776 47778876
No 15
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=20.21 E-value=82 Score=22.15 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=21.4
Q ss_pred chhHHHHHHHHHHHHhhhcCCCChhhHH
Q 023147 138 PFMAFGTYVVLAGFTLGLQGKFTPEALN 165 (286)
Q Consensus 138 PlMafiTYILL~g~~~G~~g~FsPE~Lg 165 (286)
|+++.+-..+++|+...+ +||-||.|.
T Consensus 12 PVla~~w~~~tag~lIEi-NRffPD~L~ 38 (42)
T PRK02733 12 PVVAAIWLTLTAGILIEF-NRFFPDLLF 38 (42)
T ss_pred hHHHHHHHHHHHHHHHHH-HHhCchHhc
Confidence 788999888888888776 477788763
Done!