Query 023147
Match_columns 286
No_of_seqs 135 out of 243
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa7_B TIP, hypothetical 28.7 18.3 1.1E+02 0.0038 18.4 2.8 17 25-41 2-18 (26)
2 1jb0_J Photosystem 1 reaction 9.4 76 0.0026 21.2 0.3 26 138-164 12-37 (41)
3 3o71_B Peptide of deleted in c 8.2 1.1E+02 0.0036 18.7 0.6 11 127-137 6-16 (27)
4 2xzm_Z RPS21E; ribosome, trans 6.9 1.2E+02 0.0041 23.8 0.5 6 133-138 24-29 (97)
5 2veb_A Protoglobin; hemoprotei 6.6 8.7E+02 0.03 20.9 5.9 61 88-165 105-168 (195)
6 3iz6_T 40S ribosomal protein S 5.9 1E+02 0.0035 23.5 -0.4 7 134-140 10-16 (82)
7 1xhj_A Nitrogen fixation prote 5.6 1.5E+02 0.0052 22.4 0.4 7 4-10 46-52 (88)
8 1qbf_A Peptide YY, PYY; PP-fol 5.1 84 0.0029 20.6 -1.2 16 73-88 15-30 (37)
9 3p8b_A DNA-directed RNA polyme 5.0 1.5E+02 0.0053 22.4 0.1 16 1-16 21-36 (81)
10 1veh_A NIFU-like protein hirip 4.9 1.9E+02 0.0065 22.0 0.5 8 2-9 51-58 (92)
No 1
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=18.30 E-value=1.1e+02 Score=18.42 Aligned_cols=17 Identities=41% Similarity=0.956 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 023147 25 GPGMPRPAADAQPNPFG 41 (286)
Q Consensus 25 ~~g~~~~~~~~~~~~~~ 41 (286)
+||++.|+-++-|..-|
T Consensus 2 ~PG~P~P~LPpRPaNLG 18 (26)
T 1wa7_B 2 DPGMPTPPLPPRPANLG 18 (26)
T ss_dssp CCCCCCCCCCCCTTSTT
T ss_pred CCCCCCCCCCCCccccc
Confidence 47888776666664444
No 2
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=9.44 E-value=76 Score=21.25 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHhhhcCCCChhhH
Q 023147 138 PFMAFGTYVVLAGFTLGLQGKFTPEAL 164 (286)
Q Consensus 138 PlMafiTYILL~g~~~G~~g~FsPE~L 164 (286)
|+++.+-..+++|+...++. |-|+.|
T Consensus 12 PVla~~w~~~tAg~lIEiNR-ffPD~L 37 (41)
T 1jb0_J 12 PVLAAIWMTITAGILIEFNR-FYPDLL 37 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HSCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHH-hCcccc
Confidence 77888888888888777654 666655
No 3
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=8.20 E-value=1.1e+02 Score=18.68 Aligned_cols=11 Identities=45% Similarity=0.863 Sum_probs=8.4
Q ss_pred ccCCCCCCccc
Q 023147 127 IYDINAPDLYI 137 (286)
Q Consensus 127 r~DinAPDLYI 137 (286)
.-|+.-|||.|
T Consensus 6 ~kDlkppdlwi 16 (27)
T 3o71_B 6 QKDLRPPDLWI 16 (27)
T ss_pred cCCCCCcceee
Confidence 35778899987
No 4
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=6.95 E-value=1.2e+02 Score=23.80 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=4.9
Q ss_pred CCcccc
Q 023147 133 PDLYIP 138 (286)
Q Consensus 133 PDLYIP 138 (286)
=|||||
T Consensus 24 VDLYiP 29 (97)
T 2xzm_Z 24 IDAYLP 29 (97)
T ss_dssp CSSSCC
T ss_pred EeEecc
Confidence 588888
No 5
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=6.64 E-value=8.7e+02 Score=20.86 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=32.7
Q ss_pred eChHHHHHhhceeeccccccCCceeeeccCCCccCCCCCccCCCCCCcccch---hHHHHHHHHHHHHhhhcCCCChhhH
Q 023147 88 VNDQYVRNKLKVVLFPFLHRGHWTRITEPVGGRLSYKPPIYDINAPDLYIPF---MAFGTYVVLAGFTLGLQGKFTPEAL 164 (286)
Q Consensus 88 VdnsYV~~KL~llLFPf~hk~~W~R~~e~~~g~~~~~pPr~DinAPDLYIPl---MafiTYILL~g~~~G~~g~FsPE~L 164 (286)
-|+.|+.+++++-+-=.+-|+ .+.+| --|-+|||. .+++.-|.....-...++.-+||..
T Consensus 105 YD~~Yl~~r~rIGlvHvRI~k------~~~dG-----------V~~~~~i~~ry~ia~i~~i~~~i~~~l~~~~~~~~~~ 167 (195)
T 2veb_A 105 YDQAWLDYQYEIGLRHHRTKK------NQTDN-----------VESVPNIGYRYLVAFIYPITATMKPFLARKGHTPEEV 167 (195)
T ss_dssp CSHHHHHHHHHHHHHHSTTTT------TTTTT-----------CCCCSCCCHHHHHHTHHHHHHTTHHHHTSSSCCHHHH
T ss_pred chHHHHHHHHHHHHHHHHhcc------cccCC-----------CCcccCCchHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 588888888777664332221 11222 246678777 4444444333333344456778875
Q ss_pred H
Q 023147 165 N 165 (286)
Q Consensus 165 g 165 (286)
.
T Consensus 168 ~ 168 (195)
T 2veb_A 168 E 168 (195)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=5.91 E-value=1e+02 Score=23.49 Aligned_cols=7 Identities=57% Similarity=1.075 Sum_probs=3.8
Q ss_pred Ccccchh
Q 023147 134 DLYIPFM 140 (286)
Q Consensus 134 DLYIPlM 140 (286)
|||||=-
T Consensus 10 DLYiPRK 16 (82)
T 3iz6_T 10 DLYVPRK 16 (82)
T ss_dssp SCHHHHH
T ss_pred EEecccc
Confidence 5666643
No 7
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=5.64 E-value=1.5e+02 Score=22.43 Aligned_cols=7 Identities=43% Similarity=1.027 Sum_probs=3.9
Q ss_pred ccccccc
Q 023147 4 KACSDCY 10 (286)
Q Consensus 4 ~~~~~~~ 10 (286)
-||++|-
T Consensus 46 GaC~gCp 52 (88)
T 1xhj_A 46 GACGTCP 52 (88)
T ss_dssp SSCCSSC
T ss_pred ecCCCCc
Confidence 4566663
No 8
>1qbf_A Peptide YY, PYY; PP-fold, pancreatic hormone, , inhibitor/hormone complex; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ru5_A 1ruu_A 2rlk_A 2oop_A 2dez_A 2df0_A
Probab=5.06 E-value=84 Score=20.58 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=0.0
Q ss_pred hhhhhhccCCcceeee
Q 023147 73 SNISRYFSDPQYYFQV 88 (286)
Q Consensus 73 ~n~~~y~s~lkyYF~V 88 (286)
+.+.+|.++||+|.++
T Consensus 15 Eela~Y~~~Lr~Yinl 30 (37)
T 1qbf_A 15 EELSRYYASLRHYLNL 30 (37)
T ss_dssp STTTTTTTGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHH
No 9
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=4.98 E-value=1.5e+02 Score=22.40 Aligned_cols=16 Identities=38% Similarity=0.737 Sum_probs=0.0
Q ss_pred Ccccccccccccchhh
Q 023147 1 MLLKACSDCYFLITEM 16 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (286)
|-+|||..|....+++
T Consensus 21 m~~rAC~~C~~v~~~d 36 (81)
T 3p8b_A 21 MSEKACRHCHYITSED 36 (81)
T ss_dssp -CCEEETTTCBEESSS
T ss_pred hhHHHHhhCCCccCCC
No 10
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=4.92 E-value=1.9e+02 Score=22.04 Aligned_cols=8 Identities=38% Similarity=1.140 Sum_probs=0.0
Q ss_pred cccccccc
Q 023147 2 LLKACSDC 9 (286)
Q Consensus 2 ~~~~~~~~ 9 (286)
|.-||++|
T Consensus 51 l~GaC~gC 58 (92)
T 1veh_A 51 LQGSCTSC 58 (92)
T ss_dssp CCCCCCCC
T ss_pred EeecCCCC
Done!