Query 023147
Match_columns 286
No_of_seqs 135 out of 243
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 17:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023147.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023147hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d5ya1 a.4.1.8 (A:3-56) Rob t 13.2 32 0.0023 21.3 1.1 36 63-98 4-41 (54)
2 d1bl0a1 a.4.1.8 (A:9-62) MarA 8.6 57 0.0041 19.9 1.1 36 63-98 4-41 (54)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 8.1 1.1E+02 0.0077 17.4 2.0 15 140-154 1-15 (30)
4 d2i9wa2 g.74.1.1 (A:1-39) Hypo 7.6 85 0.0062 18.9 1.5 15 123-137 12-26 (39)
5 d2c0ga1 a.71.1.1 (A:1146-1251) 5.5 1.3E+02 0.0092 21.7 1.8 19 60-78 53-71 (106)
6 d1g7da_ a.71.1.1 (A:) Endoplas 5.4 1.3E+02 0.0092 21.6 1.7 19 60-78 52-70 (106)
7 d1rutx1 g.39.1.3 (X:19-48) LIM 4.1 95 0.0069 17.9 0.1 14 4-17 3-16 (30)
8 g2bi6.2 g.3.12.1 (L:,H:1-7,H:3 4.1 83 0.006 17.6 -0.1 20 4-23 1-20 (28)
9 d1outa_ a.1.1.2 (A:) Hemoglobi 4.1 5.7E+02 0.041 17.7 4.9 36 143-180 102-137 (142)
10 d2e74e1 f.23.24.1 (E:1-32) Pet 4.0 3.3E+02 0.024 15.3 2.5 9 236-244 22-30 (32)
No 1
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.18 E-value=32 Score=21.28 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=28.0
Q ss_pred HHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhc
Q 023147 63 ILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLK 98 (286)
Q Consensus 63 ~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~ 98 (286)
+++...+|+++|+++=++ ++-..+.++.+|..+..+
T Consensus 4 ii~~i~~yi~~~~~~~itl~~lA~~~~~S~~~l~r~Fk 41 (54)
T d1d5ya1 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFK 41 (54)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 467788999999887665 677788888888877654
No 2
>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}
Probab=8.61 E-value=57 Score=19.90 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=26.5
Q ss_pred HHhhhhHHHHhhhhhhcc--CCcceeeeChHHHHHhhc
Q 023147 63 ILGSSSEYVQSNISRYFS--DPQYYFQVNDQYVRNKLK 98 (286)
Q Consensus 63 ~~~~g~~yvq~n~~~y~s--~lkyYF~VdnsYV~~KL~ 98 (286)
.+++-.+|+++|+.+=++ .+-..+.++.+++.++.+
T Consensus 4 ~i~~v~~yI~~~~~~~~tl~~lA~~~~~s~~~l~r~Fk 41 (54)
T d1bl0a1 4 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFK 41 (54)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 466777899999876554 677778888888877654
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.12 E-value=1.1e+02 Score=17.39 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHhh
Q 023147 140 MAFGTYVVLAGFTLG 154 (286)
Q Consensus 140 MafiTYILL~g~~~G 154 (286)
|--+|||++.+.+.|
T Consensus 1 me~i~yv~ifac~i~ 15 (30)
T d2axtt1 1 METITYVFIFACIIA 15 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHH
Confidence 344666665554433
No 4
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=7.60 E-value=85 Score=18.89 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=12.2
Q ss_pred CCCCccCCCCCCccc
Q 023147 123 YKPPIYDINAPDLYI 137 (286)
Q Consensus 123 ~~pPr~DinAPDLYI 137 (286)
-.|..+||.+|=||-
T Consensus 12 ~np~~~~is~pllyq 26 (39)
T d2i9wa2 12 INPALNAVSTPLLYQ 26 (39)
T ss_dssp CCTTCCCSSCCCBGG
T ss_pred cCcccccccchhHHH
Confidence 357789999999983
No 5
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.46 E-value=1.3e+02 Score=21.73 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=15.3
Q ss_pred HHHHHhhhhHHHHhhhhhh
Q 023147 60 GEKILGSSSEYVQSNISRY 78 (286)
Q Consensus 60 G~~~~~~g~~yvq~n~~~y 78 (286)
=+++++.|.+|+++.+.|-
T Consensus 53 m~KIl~~g~~fv~~E~~RL 71 (106)
T d2c0ga1 53 MRKIHEVGYDFLEEETKRL 71 (106)
T ss_dssp HHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHH
Confidence 3567889999999988774
No 6
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.41 E-value=1.3e+02 Score=21.59 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.3
Q ss_pred HHHHHhhhhHHHHhhhhhh
Q 023147 60 GEKILGSSSEYVQSNISRY 78 (286)
Q Consensus 60 G~~~~~~g~~yvq~n~~~y 78 (286)
=+++++.|.+|+++.+.|-
T Consensus 52 m~Kilekg~~~~~~E~~RL 70 (106)
T d1g7da_ 52 MGKILDQGEDFPASELARI 70 (106)
T ss_dssp HHHHHHSCTHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHH
Confidence 4567889999999988764
No 7
>d1rutx1 g.39.1.3 (X:19-48) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.15 E-value=95 Score=17.92 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=11.2
Q ss_pred cccccccccchhhh
Q 023147 4 KACSDCYFLITEMY 17 (286)
Q Consensus 4 ~~~~~~~~~~~~~y 17 (286)
+.|.||--...|.|
T Consensus 3 ~~CaGC~~~I~DRf 16 (30)
T d1rutx1 3 KRCAGCGGKIADRF 16 (30)
T ss_dssp CBBTTTCCBCCCSE
T ss_pred cccCCCCCccchhh
Confidence 67999988877765
No 8
>g2bi6.2 g.3.12.1 (L:,H:1-7,H:32-41) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=4.14 E-value=83 Score=17.55 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=14.4
Q ss_pred cccccccccchhhhhhcCCC
Q 023147 4 KACSDCYFLITEMYSNMGTQ 23 (286)
Q Consensus 4 ~~~~~~~~~~~~~y~~~~~~ 23 (286)
.|||.|.-.-.+.|.-+..-
T Consensus 1 tacsecvcplreeykcycdl 20 (28)
T g2bi6.2 1 TACSECVCPLREEYKCYCDL 20 (28)
T ss_dssp CCCSCEECCCCCCSSCEECC
T ss_pred Cccccccccchhhheeeeee
Confidence 38999988777777666543
No 9
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus mykiss) [TaxId: 8022]}
Probab=4.13 E-value=5.7e+02 Score=17.70 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhhcCCCChhhHHHHHHHHHHHHHHHHH
Q 023147 143 GTYVVLAGFTLGLQGKFTPEALNWLFIKGLFGWFMQFM 180 (286)
Q Consensus 143 iTYILL~g~~~G~~g~FsPE~Lg~~~S~~l~~~~lEv~ 180 (286)
+.=+|+..+...+.+.||||.- .|+.-+...+.+++
T Consensus 102 ~~~~ll~~l~~~lg~~~t~e~~--~AW~k~~~~v~~~l 137 (142)
T d1outa_ 102 LSHNILVTLAIHFPSDFTPEVH--IAVDKFLAAVSAAL 137 (142)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccCCHHHH--HHHHHHHHHHHHHH
Confidence 3445566666667788999976 34443333334433
No 10
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.97 E-value=3.3e+02 Score=15.32 Aligned_cols=9 Identities=33% Similarity=0.663 Sum_probs=5.5
Q ss_pred HHHHHHHHH
Q 023147 236 GVFLVKTMK 244 (286)
Q Consensus 236 ~~Fl~RtLk 244 (286)
.+|-+||+|
T Consensus 22 iifaiksik 30 (32)
T d2e74e1 22 IIFAIKSIK 30 (32)
T ss_dssp HHHHHHTTT
T ss_pred heeeEEEEe
Confidence 456666665
Done!