Query 023148
Match_columns 286
No_of_seqs 312 out of 1328
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 17:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 6.2E-26 2.1E-30 168.4 6.0 60 74-133 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 89.1 0.21 7.2E-06 38.3 2.5 28 70-99 3-31 (77)
3 1u3e_M HNH homing endonuclease 75.2 0.48 1.7E-05 39.8 -0.5 39 75-116 109-147 (174)
4 3jtz_A Integrase; four strande 67.8 9.3 0.00032 29.0 5.3 44 78-121 28-75 (88)
5 1z1b_A Integrase; protein-DNA 67.6 5.7 0.0002 34.9 4.7 39 77-119 15-53 (356)
6 3ju0_A Phage integrase; four s 50.8 22 0.00076 28.0 4.9 47 78-124 28-79 (108)
7 1x60_A Sporulation-specific N- 35.1 18 0.00062 25.8 1.9 25 95-119 44-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 33.9 34 0.0011 24.7 3.3 25 95-119 44-68 (81)
9 2ftc_I Mitochondrial ribosomal 25.0 91 0.0031 25.0 4.6 37 85-123 79-115 (118)
10 1kcq_A Gelsolin, brevin, ADF, 15.1 1.7E+02 0.006 21.9 4.1 36 84-119 27-62 (104)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=6.2e-26 Score=168.45 Aligned_cols=60 Identities=57% Similarity=0.959 Sum_probs=57.4
Q ss_pred ceeEEEECCCCcEEEEEecCCC-CeEeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 023148 74 TYRGVRMRQWGKWVSEIREPRK-KSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL 133 (286)
Q Consensus 74 ~YRGVr~r~~GKW~AeIr~p~~-~kriwLGtF~T~EeAArAYD~AAl~l~G~~A~lNFP~~ 133 (286)
+||||++|+||||+|+|++|.+ +++||||+|+|+||||+|||.|+++++|..+.||||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 5999999999999999999974 79999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=89.07 E-value=0.21 Score=38.27 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCCCceeEEEEC-CCCcEEEEEecCCCCeEe
Q 023148 70 LKHPTYRGVRMR-QWGKWVSEIREPRKKSRI 99 (286)
Q Consensus 70 ~~sS~YRGVr~r-~~GKW~AeIr~p~~~kri 99 (286)
..+|+|+||.+. +.+.|+|+-.+ +++|.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 367899999887 67999999998 56543
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=75.19 E-value=0.48 Score=39.82 Aligned_cols=39 Identities=5% Similarity=-0.034 Sum_probs=29.2
Q ss_pred eeEEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHH
Q 023148 75 YRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDV 116 (286)
Q Consensus 75 YRGVr~r~~GKW~AeIr~p~~~kriwLGtF~T~EeAArAYD~ 116 (286)
++||.+...++|.+.|.. . +.++||.|+|.+|||++|..
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 456644333668888887 4 56789999999999999653
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=67.85 E-value=9.3 Score=29.04 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=30.7
Q ss_pred EEECCCC--cEEEEEecCCCCeEeecCCCCC--HHHHHHHHHHHHHHh
Q 023148 78 VRMRQWG--KWVSEIREPRKKSRIWLGTFAT--PEMAARAHDVAALAI 121 (286)
Q Consensus 78 Vr~r~~G--KW~AeIr~p~~~kriwLGtF~T--~EeAArAYD~AAl~l 121 (286)
|+.++.| .|+-+.+..++.+++-||.|+. .++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 5999988866667889999984 777776666655444
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=67.63 E-value=5.7 Score=34.86 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=28.3
Q ss_pred EEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHH
Q 023148 77 GVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAAL 119 (286)
Q Consensus 77 GVr~r~~GKW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl 119 (286)
||++++.|.|..+.+. +|+++.+|. |..||..+...+..
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~ 53 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANI 53 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHH
Confidence 5777777999877654 778899996 88887666555433
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=50.78 E-value=22 Score=27.96 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred EEECCCC--cEEEEEecCCCCeEeecCCCCC--HHHHHHHHHHHHHHh-cCC
Q 023148 78 VRMRQWG--KWVSEIREPRKKSRIWLGTFAT--PEMAARAHDVAALAI-KGH 124 (286)
Q Consensus 78 Vr~r~~G--KW~AeIr~p~~~kriwLGtF~T--~EeAArAYD~AAl~l-~G~ 124 (286)
|+-.+.| .|+-+.+..++.+++-||.|+. ..+|....+.+...+ .|.
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~Gi 79 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGI 79 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTC
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 3445544 5999888855667888999985 677766665544444 443
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=35.10 E-value=18 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=19.4
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHH
Q 023148 95 KKSRIWLGTFATPEMAARAHDVAAL 119 (286)
Q Consensus 95 ~~kriwLGtF~T~EeAArAYD~AAl 119 (286)
.--|+++|.|.+.++|.++-+....
T Consensus 44 ~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 44 GLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 3468899999999999888665443
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=33.95 E-value=34 Score=24.71 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=19.6
Q ss_pred CCeEeecCCCCCHHHHHHHHHHHHH
Q 023148 95 KKSRIWLGTFATPEMAARAHDVAAL 119 (286)
Q Consensus 95 ~~kriwLGtF~T~EeAArAYD~AAl 119 (286)
.--||.+|-|.+.++|.++-+....
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 4468899999999999888665443
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=24.98 E-value=91 Score=24.99 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=30.2
Q ss_pred cEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhcC
Q 023148 85 KWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKG 123 (286)
Q Consensus 85 KW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl~l~G 123 (286)
.|+|.|.. +..-+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 49999987 66666677778899999999999988743
No 10
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=15.14 E-value=1.7e+02 Score=21.94 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=28.7
Q ss_pred CcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHH
Q 023148 84 GKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAAL 119 (286)
Q Consensus 84 GKW~AeIr~p~~~kriwLGtF~T~EeAArAYD~AAl 119 (286)
..--+.|-+..+.-.+|.|...+.+|.++|-+.|..
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~ 62 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 444566777666788999999999999999888854
Done!