BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023151
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZVH3|ORC6_ARATH Origin recognition complex subunit 6 OS=Arabidopsis thaliana
GN=ORC6 PE=1 SV=2
Length = 284
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/284 (65%), Positives = 230/284 (80%), Gaps = 3/284 (1%)
Query: 1 MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVI 60
MD+SDI +KL L ++K LIRKAAEIRRLCD QFDSSIIGVGE+CKAVICLE+AA+R +I
Sbjct: 1 MDISDIGRKLSLDNNKLLIRKAAEIRRLCDAQFDSSIIGVGEICKAVICLEIAATRLQII 60
Query: 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFK 120
FDR+ A+KLSGMSEKAY+RSFNSLQN IG K +L++REL ++FGC+R+I VQ LS +K
Sbjct: 61 FDRQAAVKLSGMSEKAYSRSFNSLQNVIGIKIKLNVRELAVQFGCVRVIKSVQNVLSSYK 120
Query: 121 DRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTT 180
+RF A+LPASR+ +ADF+RPVFTA AFYLCAKK KLKVDKL+LIEVCGTSE+EF+ VST+
Sbjct: 121 ERFLASLPASRRANADFTRPVFTAAAFYLCAKKQKLKVDKLRLIEVCGTSESEFSCVSTS 180
Query: 181 MKDLCHDVFGIAKEKKDPRELKSNRELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTE 240
M DLC D GI+KEKKD +++K NR+LLDVLP KR+ ED Y S DE+ S YKRHKK E
Sbjct: 181 MTDLCFDCVGISKEKKDAKDVKGNRDLLDVLPGKRRLEDGGYSSGDES--SCYKRHKKME 238
Query: 241 KVAYEEWKTSVLASNRNKAKAPCKRTTQAGLNFQKKAPETPKLE 284
+ YE+WK++V+ S + + KR QA LNF KK+ ET +L+
Sbjct: 239 EAKYEDWKSTVVNSIKKNPEKGTKRVIQASLNFPKKS-ETKELQ 281
>sp|Q9Y5N6|ORC6_HUMAN Origin recognition complex subunit 6 OS=Homo sapiens GN=ORC6 PE=1
SV=1
Length = 252
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 126/262 (48%), Gaps = 27/262 (10%)
Query: 6 IAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKT 65
+A +LGL++ ++RKA E RL V+ E AV+CL+LAAS DR
Sbjct: 9 LAPRLGLAEP-DMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMKCPLDRAY 67
Query: 66 AIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTA 125
IKLSG++++ Y S + +G + + IR+L ++F CI + + K L + +
Sbjct: 68 LIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILK----SYES 123
Query: 126 ALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLC 185
+LP +++ D SRP+FT+ A K KLKVDK K++ G + F LC
Sbjct: 124 SLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIF-------DRLC 176
Query: 186 HDVFGIAKEKKDPRELKSNRELLDVL--PEKRKFEDVEYLSADEAEVSSYKRHK--KTEK 241
+ I ++ +RE DV P KRK VE A E E HK K E
Sbjct: 177 KQLEKIGQQ--------VDREPGDVATPPRKRKKIVVEA-PAKEMEKVEEMPHKPQKDED 227
Query: 242 VA--YEEWKTSVLASNRNKAKA 261
+ YEEWK +L + + KA
Sbjct: 228 LTQDYEEWKRKILENAASAQKA 249
>sp|Q2HJF3|ORC6_BOVIN Origin recognition complex subunit 6 OS=Bos taurus GN=ORC6 PE=2
SV=1
Length = 252
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 128/261 (49%), Gaps = 25/261 (9%)
Query: 6 IAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKT 65
+A +LG+++ ++++RKA E RL V+ E AV+CL+LAAS DR
Sbjct: 9 LAPRLGIAE-QEVLRKAEEYLRLSRVKCVGLSARTTETSNAVMCLDLAASCMKCPLDRAY 67
Query: 66 AIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTA 125
IKLSG+++K Y S + +G + + IR+L ++F C + L K L + +
Sbjct: 68 LIKLSGLNKKMYQSCLKSFECLLGLNSNIGIRDLAVQFSCTEAVNLASKIL----QSYES 123
Query: 126 ALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLC 185
+LP +++ D SRP+FT A K KLKVD+ K+ G + F LC
Sbjct: 124 SLPQTQQVDLDLSRPLFTTAALLSACKILKLKVDRNKMAATSGVKKAIF-------DRLC 176
Query: 186 HDVFGIAKEKKDPRELKSNRELLD-VLPEKRKFEDVEYLSADEAE--VSSYKRHKKTEKV 242
+ I ++ +RE D V P ++K + V SA E E V + + +K E +
Sbjct: 177 KQLEKIGQQ--------IDREAGDSVTPPQKKKKTVIEPSAKEIENVVETLPKPQKDEDL 228
Query: 243 A--YEEWKTSVLASNRNKAKA 261
YEEWK ++L + KA
Sbjct: 229 TQDYEEWKRNILENAARAQKA 249
>sp|Q9WUJ8|ORC6_MOUSE Origin recognition complex subunit 6 OS=Mus musculus GN=Orc6 PE=1
SV=1
Length = 262
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 22/263 (8%)
Query: 6 IAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKT 65
+A +LGL++ ++RKA E RL V+ S E AVICL+LAAS DR
Sbjct: 9 LAPRLGLAEP-SVLRKAEEFLRLSKVKCVSLSARSSETSNAVICLDLAASCRKCPLDRAY 67
Query: 66 AIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTA 125
I+LSG+++ Y S + +G + + IR+L ++F C + L + L +K +
Sbjct: 68 LIRLSGLNKMMYQSCLKSFECLLGLNSNVGIRDLAVQFSCTEAVNLAAEILQSYK----S 123
Query: 126 ALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLC 185
LP +++ D SRP+FT A K K+KVDK K+I G + + LC
Sbjct: 124 GLPETQRADLDLSRPLFTTAALLSACKILKIKVDKTKMITTSGVKK-------AILDRLC 176
Query: 186 HDVFGIAKE-KKDPRELKS---NRELLDVLPEKRKFEDVEYLSADEAEV-SSYKRHKKTE 240
+ I ++ +D +L R+ + P +K E A E EV + + K E
Sbjct: 177 KQLEKIGQQINRDSADLARPALKRKKPEFSPTLKKKEPGLEPPAKEIEVIETLHKLPKDE 236
Query: 241 KVA--YEEWKTSVLASNRNKAKA 261
+ YEEWK +L N AKA
Sbjct: 237 DLTQDYEEWKRKIL---ENAAKA 256
>sp|Q54P62|ORC6_DICDI Origin recognition complex subunit 6 OS=Dictyostelium discoideum
GN=orcF PE=3 SV=1
Length = 469
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 95/208 (45%), Gaps = 8/208 (3%)
Query: 1 MDLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVG--EVCKAVICLELAASRFD 58
MD+ D+ KL L + K+++ +++E RL V+ +G+G E+CK C+ +A
Sbjct: 1 MDIEDVMNKLSLKN-KKVLNRSSEYSRLIKVKRP---MGLGPLEMCKPGACIFVACKELS 56
Query: 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE-LDIRELGIRFGCIRLI-PLVQKGL 116
+ ++ +++ G ++K + +S +L +G K I E+ F I + L
Sbjct: 57 IELNKSQLVRVLGTNDKLFEQSILALYTILGKKRPPYSIVEISNTFKLNSTICESSENLL 116
Query: 117 SLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFAS 176
L++ + + + + +F+A + Y+ ++H + +D L+ + S+ F
Sbjct: 117 KLYRTKILGGIEEVQSQFTNIDDGIFSAASVYIMTQQHSINIDHTLLLSLVDCSQETFQR 176
Query: 177 VSTTMKDLCHDVFGIAKEKKDPRELKSN 204
+ C+ I K KK P + K N
Sbjct: 177 AMNAITQCCYQGESIVKLKKTPPKNKQN 204
>sp|Q9Y1B2|ORC6_DROME Origin recognition complex subunit 6 OS=Drosophila melanogaster
GN=Orc6 PE=2 SV=2
Length = 257
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
Query: 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFD 62
+ + K+GL + ++ K E+ RL +++ + + + E K V+C +LA+ + FD
Sbjct: 5 IEQLITKMGLREEPNVLEKTTELVRLLELRSTNVPLQINEYGKIVLCADLASCMIGIAFD 64
Query: 63 RKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELG------IRFGCIRLIPLVQKGL 116
++ A+KLSG+ + Y L N F+ LD+ +L ++ G + ++ +
Sbjct: 65 KEQALKLSGLRKSQY------LNNKRMFEKLLDLNKLASVNDICVQLGLNEVARKAEELM 118
Query: 117 SLFKDRFTAALPASRKTSADFSRPVFTAVAFY 148
+LFK + A+ D S P + +A +
Sbjct: 119 TLFK-----GVAATEDMGTDTSHPQYATMAVF 145
>sp|Q1RH00|EFTS_RICBR Elongation factor Ts OS=Rickettsia bellii (strain RML369-C) GN=tsf
PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRELKSNR----------- 205
KVD L + V SET+F + + ++L ++ +A KD ELK+ +
Sbjct: 67 KVDGLTGVVVEINSETDFVARNEQFQNLVTNIANLAINVKDIEELKAAKMPNGKSVEEDV 126
Query: 206 -ELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTEKVAYEEWKTSVLASNRNKAKAPCK 264
E + + E +E L E + SY + +VA K SVL ++ AK K
Sbjct: 127 VENIATIGENLTLRRMEVLKVSEGAIGSYVHN----EVASNLGKISVLVGLQSSAKDTAK 182
>sp|A8GUK0|EFTS_RICB8 Elongation factor Ts OS=Rickettsia bellii (strain OSU 85-389)
GN=tsf PE=3 SV=1
Length = 309
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 16/120 (13%)
Query: 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRELKSNR----------- 205
KVD L + V SET+F + + ++L ++ +A KD ELK+ +
Sbjct: 67 KVDGLTGVVVEINSETDFVARNEQFQNLVTNIANLAINVKDIEELKAAKMPNGKSVEEDV 126
Query: 206 -ELLDVLPEKRKFEDVEYLSADEAEVSSYKRHKKTEKVAYEEWKTSVLASNRNKAKAPCK 264
E + + E +E L E + SY + +VA K SVL ++ AK K
Sbjct: 127 VENIATIGENLTLRRMEVLKVSEGAIGSYVHN----EVASNLGKISVLVGLQSSAKDTAK 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,352,567
Number of Sequences: 539616
Number of extensions: 3746639
Number of successful extensions: 10422
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 10402
Number of HSP's gapped (non-prelim): 46
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)